LOCUS       KCOD01000001             494 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 71pyr ultra-conserved element locus
            uce-4516, sequence.
ACCESSION   KCOD01000001
VERSION     KCOD01000001.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 494)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 494)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..494
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="71pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>494
                     /note="ultra-conserved element locus uce-4516"
BASE COUNT          148 a           99 c           85 g          162 t
ORIGIN      
        1 gcatttgaaa tatgtgcttg gtgacatgga gctgattgcc caaaggaatc aggatacata
       61 tatttgtatt attgtacacg tgagtagctt gaatcatgta ctgctcgctc tctttgtttg
      121 gattatgcag cttggctggg cagccatcca aaagattcac attaaattct agctatattc
      181 agcacaaaag tcatctagca tcagaggatc aaagttacat caaccaacaa gcactaagga
      241 attgataagc cactaaaatt aggtcatctc ctagcagctg cttttgatgg atgaagtaga
      301 atttagcctc aggttttcta tttaaagatc tgttacacca tcttttcctg cagctacaat
      361 gagaacacaa caaagtataa tgcttctgat taaatgttta atcattactc tttactcttc
      421 tgattgtttc tgccatggca cagatttact gcacatacta tttgcagctt tcctaaccct
      481 ttttaaactg acat
//
LOCUS       KCOD01000002             538 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 176pyr ultra-conserved element locus
            uce-5301, sequence.
ACCESSION   KCOD01000002
VERSION     KCOD01000002.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 538)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 538)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..538
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="176pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>538
                     /note="ultra-conserved element locus uce-5301"
BASE COUNT          164 a          119 c          109 g          146 t
ORIGIN      
        1 caactgcact atcctccaac tggccaatgt ggaggttgga gaccacacgg ggatcaaagc
       61 gatatgagga caacaggggt ttcattaaaa tgttctcctc gctgcctgag gaaagagcag
      121 tgaggacaga gcgagagggg gaggaaggga aatcatctgg cccaaacaag tttaactaaa
      181 aaaaaaatcc aagcaaacca cctgtggtct ccttggaaac tggcttgcaa cccctccagc
      241 caccttttaa tgaaacccca gagccccttt attaatttat taaagaatct attttctgaa
      301 gattcataaa ccgcgcataa ctcatattcc aacacatctc tgctatgcta atagcgtgtg
      361 ctgccatgaa taattaattc tttaattagt aataattaga ggttgttgta taggtcaaac
      421 cattgggctg acagcatgct actgtcaaaa tgtcatttga attaacagga ctgtggccct
      481 ttctacacag aatgattcgt tgtttgggtc ccctcccctc caaattttat tgttttaa
//
LOCUS       KCOD01000003             448 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 269pyr ultra-conserved element locus
            uce-3360, sequence.
ACCESSION   KCOD01000003
VERSION     KCOD01000003.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 448)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 448)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..448
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="269pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>448
                     /note="ultra-conserved element locus uce-3360"
BASE COUNT          173 a           73 c           48 g          154 t
ORIGIN      
        1 tttttttaac aaaaattaaa ctatacacca atctaagtta cagaaacaaa aataaccttt
       61 ataagatcac atgtataaaa caagaaatga aatgtgtttt tatttaaggc aatactgggc
      121 tacttcacaa atcaccacct caaatatata cactgctcca cactactaat tttctatcac
      181 attcacaacg gattctttaa taccaaatat tgttttaaat cttcgatgta gcaaactatt
      241 tttattcaca tttccaatta tggaatcata aatgctttgt atccaattaa aagcaatgaa
      301 aaatgtagct ataagaaaac tattatattt atgtgttaac tacatatgaa tatcatccat
      361 agatactgga tgttaaaatt tacaaaaatg agagtgtgtc agtatgttta acctatgaaa
      421 tgtgatctta tccagctttc ttctgtaa
//
LOCUS       KCOD01000004             778 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 377pyr ultra-conserved element locus
            uce-601, sequence.
ACCESSION   KCOD01000004
VERSION     KCOD01000004.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 778)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 778)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..778
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="377pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>778
                     /note="ultra-conserved element locus uce-601"
BASE COUNT          247 a          164 c          142 g          225 t
ORIGIN      
        1 aatgccagtt ataatgcaat ttattggatc ttccgaaatt tcagatcaca gcattctata
       61 atcaattcat tgcattcttc agccactgag aacataacca gaaaaaacaa gagtctcaag
      121 tgcacctaga tatgtttagc ataaaagcac ttatatacaa gtaacaagac agaaccacta
      181 tttattgttt cagctttaag tctcggatgc ctcaagagga caagatggca tgctggccct
      241 ttaaaactga aatgcttgtt tcctttctgt gagaaaagta aatcatgcta tagtgagtgg
      301 agctttgaaa aagcatccat ccattaaagt tcatggatcc tcgtttccag attgtccctc
      361 ccctggctgt gtctcaagtt acagccttgt acaatccaag tctaaataat attcactatg
      421 ataaatgaca ccataactcc gatatccaca atcaatcttt gctttaaaga tacatccatc
      481 ttcaataatg ttgatgggga ttctgtaaaa tgggaaacgt gactgttttc ccgacctcct
      541 aacagtgggg gaaggaagct ctgagtgatg gctgtcagcc cacatctggc tgcaaaaata
      601 aattagcctt atgtagacaa atgaaaggac cagccctgac tagaaaacag ccactcctga
      661 gcaatggcta atttatagga ctcctttctg gaaagttcct agctgaggct acagtctcct
      721 tagctatctc tttaaatgat atctgatgct gtaaataact tcagtgtggt aggaacta
//
LOCUS       KCOD01000005             788 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 487pyr ultra-conserved element locus
            uce-85, sequence.
ACCESSION   KCOD01000005
VERSION     KCOD01000005.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 788)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 788)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..788
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="487pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>788
                     /note="ultra-conserved element locus uce-85"
BASE COUNT          222 a          182 c          146 g          238 t
ORIGIN      
        1 ctttggctgt aagaatattt tgctctggaa tgtaggtgat tatgattcag cataaaaggc
       61 agctgcaagc cattcaactg tctttcattg gaagaaatga tcatccagcc gtctaaattg
      121 cacaccttct ttctaacttt gtcaagattc atttctgctt tctctttcag tctttgttaa
      181 aaaaagaaat ttaatgatac tattctcatt atacagctat cagttacata aaatatcttt
      241 gtttagaggc ctaataaaat tggtcatata aagaggaaat gagattttga atgtaaaacg
      301 aagctgacag tgctcttcta ttactatggt cttattagga aaaattctct gacatctgtt
      361 tatcccctgc agccaacctt gtattcagaa cacagtaatt gattcacagc atccactggg
      421 gatctaactg gctcactttt ccacaccgca ctacacaggt atctctgcag ctaattctga
      481 atgtacatct acatcgttat ctcctggtga actgtgaccc gaaacacttt ggaggcccag
      541 atgaaagtgc ttcctcaccc ctccagtgct gagggtgcag gcgtttctgc agcgcggcaa
      601 ttcacccagg acacccaatc acaaccagcc cctttgaagc cctgctcagc tgggagacca
      661 tgaatgattc atggcttctc tacacacact aaagggggaa gagcaaagct agtgtgtatt
      721 attcaggact gcatcctcaa taagcctctg tgttcagcaa attgctacaa cgttttctgc
      781 ttagtcct
//
LOCUS       KCOD01000006             577 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 597pyr ultra-conserved element locus
            uce-7852, sequence.
ACCESSION   KCOD01000006
VERSION     KCOD01000006.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 577)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 577)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..577
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="597pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>577
                     /note="ultra-conserved element locus uce-7852"
BASE COUNT          192 a          107 c           91 g          187 t
ORIGIN      
        1 ataatcattt gaatgaaata tttgctactt taagtttttt ttccttcttc tttcagatga
       61 tcctcttgtt ttgcatgtga aaaaaatcgt ctgagattta cagccctccc aaatggagat
      121 aaagccttgg caatgagttg gaaacctgtt gtaatctgtg atccaggaaa caaagagcct
      181 cattaatgca gagactttgg tgagcctttg atgttagcta gcatagcatt cactctcagt
      241 tccatttgca tttaaacatt cataaaaaca tcatctctgc ttcctttgcc ttaagcaatt
      301 taggagtaaa gtatagcttc tatttaaaga aacccactgt ggtgaggctt agaatacaaa
      361 tatcacataa tcttcaagca gagcaaatat tttatcctac atttctggtg ggcacattta
      421 ataatattat gtgtaagacc caaaataaaa gatccatctt actttcatta accttacacc
      481 acatattcaa gtcaaaagag aaaatgggcc ctgttatata ctacatacca atttgtggaa
      541 ggaagagaat ccacaagatt ttacattatt gacaaga
//
LOCUS       KCOD01000007             772 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 708pyr ultra-conserved element locus
            uce-7885, sequence.
ACCESSION   KCOD01000007
VERSION     KCOD01000007.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 772)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 772)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..772
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="708pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>772
                     /note="ultra-conserved element locus uce-7885"
BASE COUNT          210 a          172 c          187 g          203 t
ORIGIN      
        1 aaaatgacat cagacaatgt aaccaaggac taaaaacaac taatgaattt ttaacttcag
       61 agacaatttc ttgaaatatc cagaaaaccc caacaacatc cccaaataaa taaacacaga
      121 aagcaggcca ctgaaaaaga ggaaggtata agaggcaata ttttggacta accctattag
      181 aatcttccgt acagtcttct cgtgatgagc caacagacct tgtgagtgac ttatgctgca
      241 cctgtggaga taacagttgc aggctgtttg ctctggctgc catcccttgc cctatgctta
      301 agccaccctc tgagcccttt gacctcactc tgtcccggct cacatacata gagtgtctat
      361 gagggcgctg ctgtgaagaa aaaggactgg tataacctag accataggaa aaagattcat
      421 gtggagcaga cagagagtgg gaatggcttc catccatgtg atctggcagt tttaactcct
      481 ccattgtttt ggagtgtctt gttgatggtc ttcgggtgtc cagggtaccc tcgctgcggt
      541 tattccttgc cgatggactg agcatagttc tgttatcact gtgccgggga gcacttggac
      601 tggtaggaga attcaagtcc atacagctgg atggaaaata cctactggtg tttggctctg
      661 cagcttgggc cctggcctca gaaaggttgc ccacagattt tgagtctgtc agaactccat
      721 ggctcttgga ctttgtccga taggagggac tcttagaaga ctgtgggatg gt
//
LOCUS       KCOD01000008             587 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 816pyr ultra-conserved element locus
            uce-5110, sequence.
ACCESSION   KCOD01000008
VERSION     KCOD01000008.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 587)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 587)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..587
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="816pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>587
                     /note="ultra-conserved element locus uce-5110"
BASE COUNT          176 a          122 c           98 g          191 t
ORIGIN      
        1 tttttgagac atctagctga gttcataaca agtttcacac tgaccgttca tttgtattcc
       61 cctgaatgca gtttttattc ttcagaagac tagacaaagc accatcacaa aactttgcta
      121 aactaataaa tgcagtcatt ttgaagttct tagttcttaa aaacacagaa aatgcagtgc
      181 tttaacttct gttgctttaa ctcacaggct ggtcttcctc cctaacccct ttgttaacaa
      241 gtggtggtcc tgtccccctg ggtggcaggc ccacccttct tcaccaagct gctgcccagg
      301 gaaatgtcac tttattatca atgctgctta atgaagaagg actggacatt aattactctt
      361 gtgaagatgg ctattctgcc ttgtattctg ctgctacgaa cggacataca ggtaaataag
      421 gtctattatg gcatccgtgt aaaatatttt taaatcaatt aggtcaaatg catttttctt
      481 aaaaatatga aattaccaaa gtcatgataa gcaatgcttc ttgaggattt ggaactattt
      541 gaaaaaaagg aacatctgtt ctatttctcc actccttcat ataaaaa
//
LOCUS       KCOD01000009             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 928pyr ultra-conserved element locus
            uce-5144, sequence.
ACCESSION   KCOD01000009
VERSION     KCOD01000009.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="928pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-5144"
BASE COUNT          150 a          144 c          120 g          188 t
ORIGIN      
        1 tgcagcagtg ccccttgcag tgcctaccaa gaatttaata aagatctact gcctgagtta
       61 cctttagctt ttagaaacta aaaaatgcaa acagcttgta agcagcattc attaccttgc
      121 acgccttcag ctgcttattg gatacacatc cccctccctc cagcatctct ctcttttttt
      181 aatatgtttt tttttaattt gttttgatga atgagtgaca accctgacac ccgattcgct
      241 gagattaata gaaacgacac aatatttacg tcgcgccgac gagcaattat cctgccatct
      301 atctttgaga ttatctttct gattgaaaac tactcatccg tgtaatcgga attatttgga
      361 attagaaggg aatttatggc ccctctcact ctccctccta tttgcctctg tctccatcct
      421 tcttccccct tctttaagag ggtccttcct tcttccagcc ttgtagatgg aaacgtgctt
      481 tgcaaggatg gttgtttctg gagatgactg ggccctactg tggccaagca gaggacagtg
      541 agaatgctct tggagagcag ctgaaggatg aaaggctctt cagaactggc atgggaagtg
      601 ga
//
LOCUS       KCOD01000010             601 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 1033pyr ultra-conserved element locus
            uce-2689, sequence.
ACCESSION   KCOD01000010
VERSION     KCOD01000010.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 601)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1033pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>601
                     /note="ultra-conserved element locus uce-2689"
BASE COUNT          187 a          100 c          105 g          209 t
ORIGIN      
        1 aatccccaca cagcatttgt gtcatacaca tctcaaaaat tcttcagtga cccagactga
       61 gtggattgaa ttaatggcaa ctttaaaact acaagtttta gtgtaattgt tttattgttt
      121 tggaaccaag atgcaatcca gttcctgtgc aaacatgttt aacgtgtgtt aatgtgtttc
      181 aaaaccagac cctctccgca aaatcctgct tttcattaat tgacatcagt agcatggtac
      241 agtatttcaa agcactggcc aaatataaac tgtgtttcta atttccttac tttcctgtgt
      301 ttggaatgcc aatgttaatt tgttcccatg gaagagtgag ggctgccaac cacagtttta
      361 tataaatggc tttgggctgc caacattaaa tgatacttag gaattttcat gacattttat
      421 atttaaaact gagagaaatt gagggagatg tatgggatgt ttcaaggcaa atgattgaag
      481 aaatttatcc tttgagttct tctcatttaa gatagtctgt cagatattac aataaaagtt
      541 attttgcatg gaactttgtt gctaacgatc caaacacata attttagtta tttattaata
      601 g
//
LOCUS       KCOD01000011             595 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 1143pyr ultra-conserved element locus
            uce-5783, sequence.
ACCESSION   KCOD01000011
VERSION     KCOD01000011.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 595)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 595)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..595
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1143pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>595
                     /note="ultra-conserved element locus uce-5783"
BASE COUNT          167 a          101 c          126 g          201 t
ORIGIN      
        1 aatgcacctc aatatggact tgcatcatcc cggctattct ggacctgagc ctttgagtgg
       61 aaattggcgg caccacgctg tgtggtgtct tggtgatgtg gcataatgtc cattgtgagc
      121 tagttagaca ccaaactcat gtcacacgtt ctctgaatag acttgaattt tagtggccaa
      181 aagtggaaaa gctagagcac taatctatgt gccttagctt cctataattg agcttataaa
      241 tttctttttt aaatatttat tctcttacta ttgtgtattt tgttttcctt atagccatta
      301 aagaaagccc taaggatgat gggagctcca aatctgatat cagataattt agattgtgga
      361 cttagttaca gtgttatctc ttaccttaaa aaactcagcc aacaggtagt attgataaaa
      421 cctttgcaat tagaagtgcg ttgattattt agtttgtggt aatctcatta taaagcagtt
      481 agttcatatg ggtgtgcagc atatatgaag attggtgagc atttccactg ctgaatccag
      541 tgtaattcta tagccagtga ttgtgccttc tgtaagtggt ggagaggaat gcaaa
//
LOCUS       KCOD01000012             765 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 1255pyr ultra-conserved element locus
            uce-2619, sequence.
ACCESSION   KCOD01000012
VERSION     KCOD01000012.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 765)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 765)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..765
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1255pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>765
                     /note="ultra-conserved element locus uce-2619"
BASE COUNT          213 a          187 c          126 g          239 t
ORIGIN      
        1 gacagcttta tggtaattct atgtaccgcc ccctcccagt ccattgagtt aaaagcaaaa
       61 gcacagacat gaggcaaaca tggaaaatgc cattactgta ttttgagaaa agcagcaacc
      121 cagtgtctat gaaaatttaa taaccattga catttcttac tgcaaatcca ggacaaactt
      181 ttatttgaca accatatgtc ctttaaaaga gatccataag tcttcaaata aaccagactg
      241 ttcttccctc tctcttcccc tctctctctc tctctcaatc cctctctgtc tcccctttta
      301 atgcccacat ctccactatc aggaacaaat atgatttctg attgaacatc actttatttg
      361 ccagttctgt ggtcttttct tatcttgttc cacacttctc aggctttgtg gttaaattat
      421 gtattaaggt caatgtcaaa acacggaaga tctgtaatct acagggagct cccttttatt
      481 cgttattaca gtgaaggctg agcgcaactg tcagggagct tgggatgtgc tcagcatgga
      541 ggcttgctac acagcagggc tctacaaagc ctctctcctt gttctcccag gacgaaccct
      601 tgatagattt acccagataa cccatctcac tttaaagctc tcttgtctct gcttcaatct
      661 gaaagctgtc aagtgcacct atatagtaat gtcataaatc aaacgtaaaa tgtgtacact
      721 ggagacactg caagtgtcat gtattcactt gtactttgag atctt
//
LOCUS       KCOD01000013             729 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 1366pyr ultra-conserved element locus
            uce-3329, sequence.
ACCESSION   KCOD01000013
VERSION     KCOD01000013.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 729)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 729)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..729
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1366pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>729
                     /note="ultra-conserved element locus uce-3329"
BASE COUNT          200 a          171 c          205 g          153 t
ORIGIN      
        1 agaagaaaac tgctgtaaat tttagcagaa tgtagtgttg caactagtga tgtaaaacag
       61 cttttgcagt gcttgaactt ggatcctttc agatctcagc cacagtggat tgggagacca
      121 ttatgagaat tcccactggg gacagcagcc cgctttcagg agtgaaggca actgcagctg
      181 ggataaagtg ataatagaca ggactgacaa ggaagcgtgg ccttccatta ccggagctga
      241 gactgagtct gcctcagaat gtactacaga cactgactct gcctccaact gtggctcaga
      301 gaacagtagc atggctacag ggagtgccca aggcaacttc actggacata caaagaaaac
      361 taatggcaat aatggcgcca acggagcact cgtccaaagc acttctaacc agagtgccct
      421 tggagctggt ggagcaaacg gcaacggcag ctcggccagg gtgtgggggg tggctgcggg
      481 ctccagctct ggcctagctc actgctctgc cagtggtggg gatggaaaga tggacaacat
      541 gatgggagac ggtagaagtc agaactgctg gggtgcttcc aactcgaatg ctggcattaa
      601 tcttaacctt aaccctaatg ccaatccagc tgcctggcct gtacttggac atgaaggaac
      661 tgtgggagca ggcaaccctt ccagtatttg cagtccagtc agtgccatag gtcagaacat
      721 gggcaacca
//
LOCUS       KCOD01000014             810 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 1478pyr ultra-conserved element locus
            uce-7738, sequence.
ACCESSION   KCOD01000014
VERSION     KCOD01000014.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 810)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 810)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..810
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1478pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>810
                     /note="ultra-conserved element locus uce-7738"
BASE COUNT          233 a          144 c          164 g          269 t
ORIGIN      
        1 aaaaactaat aaagtagtaa tctacagtat tttattattt agagccctag ccttagggat
       61 atgatttgca aggatatatc tcaattcagg gtgtacatgg gtgaatatat ctgtcagtct
      121 tttctataag ttttttcttt ctaccaaatg ctgtctgcat tcattccata gaaacactac
      181 cacctcttta agtggtaatg ctccctgcag agtttttagc ctgtaggaga tatgattagg
      241 gggtgatagt gttaagcact cctcctgtat ctgctggccc actatgataa ccttagggtt
      301 acaatgcatg tctgacaaat acaattccat tgtgactagc gccttatggc aatttaggag
      361 gcttattcat cattttacaa cagacttctg tcggggattt tgcttatttg cccttcgctg
      421 gtgtacagta gttgtaggtt tatctctagg agtccagccc taataaccaa taacaaagtg
      481 cttaagctct aagcttgtga gaaatggact tacattatac tccaactgca ccttagctct
      541 cgactgataa gacaatgtgt ctttgagaga aggaaggatt tgtatgaact gatcctttac
      601 agtatggttg gtagaagata tggggaagta cattgtgttc taaccatcca gatcccagca
      661 taaaatgcat ccttgctatc attagaaatg tttcctttaa aatatgaaag taaagagata
      721 tcttgccttg gaaattgcac tacaaagttg tttgtaatga tggtgtggga tttggaagaa
      781 ctgagttact tttgatgaaa tccccatgat
//
LOCUS       KCOD01000015             718 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 1592pyr ultra-conserved element locus
            uce-6409, sequence.
ACCESSION   KCOD01000015
VERSION     KCOD01000015.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 718)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1592pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>718
                     /note="ultra-conserved element locus uce-6409"
BASE COUNT          235 a          120 c          139 g          224 t
ORIGIN      
        1 gaactgaata aatgggataa tctaattggc tacattgcct tgcccaaagt aagtatggtt
       61 aaaaagtaca ctcttgtaat aagtaaatct attagaaact gaactttaat ttcagaataa
      121 aaattatagc aaatggggag gatgatggta gatatttact aaaaaacaca gacaatatga
      181 aaggattaaa atgctttaat cagacaaaaa agggctttgg ctacttgatt agggctgatt
      241 tccaccatct gcttatactt actgaggatc tagccctgac tgaacactaa tttgtgcact
      301 tcctagaaat tgaaatctct cagcaagcaa attaacaaga gcagggattc agcaataatg
      361 gagctcctcg gcttttgttt ccctctgaca gatggacagg gtgcgctcaa attgaattca
      421 gctttaattg cattgtgcca tttaaaattt tatctgctcc acagattttg tttacaggtt
      481 tcaggattcc aaacctttgg aaattttttc agccctgggt gaaataaaga gcactataat
      541 tctgtgtgac tagtaggtgt tcattaccac tctttgccct aaagggtggc gtgctgggca
      601 aagaattcta ttttcaagcc ctaaattgat gggtggagga gtacattttt tctcactgta
      661 aatgctctct tattgactat taataaatag aaatattgtt aaaagctagg ctagaaaa
//
LOCUS       KCOD01000016             643 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 1697pyr ultra-conserved element locus
            uce-2774, sequence.
ACCESSION   KCOD01000016
VERSION     KCOD01000016.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 643)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 643)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1697pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>643
                     /note="ultra-conserved element locus uce-2774"
BASE COUNT          215 a          118 c          104 g          206 t
ORIGIN      
        1 aaaaataaaa tggcttttca tgcttattga tcttgatttt tggccatttt tacacttcat
       61 tgcctataag ctcagtaagg atgtgctttg taaaaggaac tgaagtttct tttctcagtg
      121 gattagacat ttcacatttt agtgactccc actaaccccg cctcccagaa gcagcccttt
      181 ccattgactt aaaggattga tctttaagta atacatatga tattagtttt tccgttttaa
      241 aataatcaca ttattgcaga cattttaata gctgtagagg ttgctatgta ttaacatgat
      301 tcatggtcct tgacagcagt gtctctgaaa atcccacagg aatgcaaaat acaaaactcc
      361 acacacgttc aaattttact gcctgcagct aaaagagggg cttaaaactg ttgaaaccct
      421 tcaactttaa aagcattaat agatggtccc aggggattaa atctaaatct taatgtgtaa
      481 aaatcaagtt aataaccaca gagattaata tggttgcatt tgattattgt gataatgcaa
      541 acaattagta ctgctaaagt gagatatatt agcctcctac ttgccccaca cacatctgca
      601 aagcattgga aataaatgga aataaaacat tttgctctga aag
//
LOCUS       KCOD01000017             444 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 1804pyr ultra-conserved element locus
            uce-3106, sequence.
ACCESSION   KCOD01000017
VERSION     KCOD01000017.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 444)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 444)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1804pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>444
                     /note="ultra-conserved element locus uce-3106"
BASE COUNT          152 a           52 c           75 g          165 t
ORIGIN      
        1 tttgagttac atttcagtaa atgaatgcta aagacatcat actaggaaca tatgcaatgt
       61 ttttattaca tagttctaca gaaagttaca gaattctttg ggttctttgt aatttactga
      121 attggtcaaa cacaaatgac cagaagttgt tataacatag ataatttttg ttctattcca
      181 gatacggaat gaaaatttgc atttaaaatc tttgtgaatg ttttcagaaa tgaatagata
      241 acagtactaa accgaagtct ctaaagttat gtattcataa tattgcatag tagtatgctt
      301 aggctttact atgtactagc cttttgttgg atttgtgtac gtattttacc tatgggtttt
      361 aatgataaag tgtatgactg ctttgcatat aagtccttat gactttaaga tgttaaaaaa
      421 taaagaaatg gaatggtctt aaaa
//
LOCUS       KCOD01000018             496 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 1908pyr ultra-conserved element locus
            uce-5837, sequence.
ACCESSION   KCOD01000018
VERSION     KCOD01000018.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 496)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 496)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..496
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1908pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>496
                     /note="ultra-conserved element locus uce-5837"
BASE COUNT          137 a           99 c          120 g          140 t
ORIGIN      
        1 gagatggcag gaaagcttgt tgtatttcat tttggataga acactcaagc ccccagtcct
       61 taatggatca gtactttgcc cgtatgcgct ccttgatgtc aagtaaggaa ttgccagcaa
      121 ggattcgttt cctgctgcag gtatgatcat aatcttgcaa aattgtcttg aagactttca
      181 aggatactgt ggagttgaga gaacacaact gggttcctcg caaagctttt cttgacaatg
      241 gaccaaagac tatcaatcaa atccgtcaag atgcagtaaa agtaagtgtt tgctgtgcac
      301 ttgggagtag ttaaccagat ggacttcagt agttctgacc aaaattaaaa ggatctggga
      361 gtttttattc ctgctcctat gtctcaaggg atgagaagcg acttctttct ggagggaccc
      421 tttatgccac ccaggatgaa acttgacagg gacccactcg gagggcttgc tgatatgttt
      481 ggacaaatgc caggta
//
LOCUS       KCOD01000019             395 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 2016pyr ultra-conserved element locus
            uce-6596, sequence.
ACCESSION   KCOD01000019
VERSION     KCOD01000019.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 395)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 395)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..395
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2016pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>395
                     /note="ultra-conserved element locus uce-6596"
BASE COUNT          128 a           51 c          101 g          115 t
ORIGIN      
        1 gcaagaaggg gaaatattac agcataagta ttgattgctg catgcagagg tcactgtgtg
       61 gggattgcac ttttatcaca aggttcttgc gaaaggtgaa gttttggcaa gatcctaata
      121 ataactgtgg agtgctagtt ggggcagggg gaggaaaatt attttttatt cttagtacct
      181 caaggctata catggcaatt actattgcag aggcaataaa gaagttgtta attacacgtt
      241 ttataccctt gtagcacaaa gtaagaatga aaggactaaa ggttacaaga agaaagaaat
      301 tgctggagac tttttagcga agcaagttat agtgggctag aggggcaatt tcagtttgat
      361 caggataaaa acttgaaatc ttgcttgctt gattg
//
LOCUS       KCOD01000020             636 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 2127pyr ultra-conserved element locus
            uce-4751, sequence.
ACCESSION   KCOD01000020
VERSION     KCOD01000020.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 636)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 636)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..636
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2127pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>636
                     /note="ultra-conserved element locus uce-4751"
BASE COUNT          209 a          121 c          119 g          187 t
ORIGIN      
        1 ttattaagtg gaccatggcc ctgattttgc ttgttttgct gctactcctt cgggacgaca
       61 gaggtggcct tgttcacacc actgactttc aacatggtga acaagattta aagaaatata
      121 ggccccttta gagaggaagg gttacatggc agagctgaat aatgggcttt aataggcaaa
      181 ccaaacagtt aaataaaaga tgcacacggc atgctaaaac ttaaagaatg catattcaat
      241 gcaatgcatt attaaataca acggtgaaca tatgggtgcc tacaattaat gtatataaat
      301 agctgataaa attgctcagt attagaaagc tagcggcaaa aatgacctca tatgtcaagc
      361 agacaagcag gcagttacca ttttctttgt acaccttaca gatgataaat tagttttatg
      421 gtctgcatgg ggcccttatc acattacagc accaagtgtt tgataaagaa aaaaaatgcc
      481 tcagctaaaa atcgaactga aatttggagt ccccgtggac ctcaaacgta aagaatttta
      541 accaacttcc ttttggaaag atttattgct ctaaagagaa atgtgtatct ctatcctatg
      601 tggttttatt acaacttctt ctcttccctt cttctc
//
LOCUS       KCOD01000021             763 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 2342pyr ultra-conserved element locus
            uce-6014, sequence.
ACCESSION   KCOD01000021
VERSION     KCOD01000021.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 763)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 763)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..763
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2342pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>763
                     /note="ultra-conserved element locus uce-6014"
BASE COUNT          224 a          168 c          158 g          213 t
ORIGIN      
        1 aagaagttcc tcattcctcc ctactgccct tcctgttttc atgtctgttt attcagagga
       61 ttgtctttcc acaagcaaac aactagagac aagctcactc caaatgtatg ttctctcatg
      121 tttcaagcac ttgctctctt cttgctgaat gtttagttac agcaaatgga tatgtggaat
      181 gaagacattt cccctttgac tagcacattt gccgaaggta tgtcaaggat ctgaggcaag
      241 gggtatgggc aagctttcaa gaaagttttc ccccttctcc tttgcttgct tattggaaga
      301 gcaataaata tcaagcagac agacccttct cacagttaca aagcctacct gtaactgagc
      361 tggataatta gcagccttga agatgatata tgactttcat taccctttgg gactggagac
      421 taaatgagga cagagctaat tgccgtgcaa agcagtttgg catgaatgag aaaaatgcag
      481 gcgctgtctc ctgccaaaaa agggccctat tgctgctctg atctcatggc tggtttttgc
      541 cgcaggagtt cacttggtgt ccataaatca tggtctgctt acagctgaaa ctgcactgag
      601 tcatcaacat gcaataagct gagtgacaga ttccagcctg actacattag aacttcagac
      661 ttaaacagaa aattaaaccc agactacaca gacatgaagg ctgtgagaaa cacaaggctt
      721 gtttacttga caatagaaga cggatgtttc caggaaataa cat
//
LOCUS       KCOD01000022             823 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 2453pyr ultra-conserved element locus
            uce-4036, sequence.
ACCESSION   KCOD01000022
VERSION     KCOD01000022.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 823)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 823)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..823
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2453pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>823
                     /note="ultra-conserved element locus uce-4036"
BASE COUNT          258 a          151 c          166 g          248 t
ORIGIN      
        1 gaaagattat cctaatttta ttagtggtga gtgtctatgt tgttcttagc atgtcacctc
       61 acttgttcaa cagaaaacta agctatacaa catattgatc atctggcaaa ccaaagtagt
      121 agtgatctgt aatccaccaa gcatttattg actttatccc agttcagatc cacaatgcaa
      181 atcaatgctg tataatacta ttttaaagat tagtaattat gtagtaggtc tgatcaactt
      241 tctgcctaaa tgtatccaaa aataaaacac tctaaacatc ttacaaagga gaaaaaggag
      301 aagctgattt aatggtctaa tgaggccatc ttccagagac ttgttttgtg tagggcttgc
      361 tttgaccttt cgctttgctc aggagcccaa cgcttcattt ttcacattct tgcaattacg
      421 ttaacgcttc aagcatttct gactccaagt cagctagcaa caccaggcat aactcaacac
      481 tgtgagtttt tctcctctct gtagattcat taacaggtca ccggggtccc aactgaaatt
      541 taaaactgac tggttctgtt gggttagctg agttatagca agggagatgg caggaaaggg
      601 ggtgagagaa ggggagggga aagagaagac cctggggttt ttgccaaaga atatatgtgt
      661 aaaaactcta agtggaagat taaaaggtgt gtgtagcttt atcatccacc cttttctttg
      721 gagaggaaaa aacacatctg aaagtcttct ggggtatgtt ttctttatta aacaaagtga
      781 aaacagccac tgcctttaca taaaaggcta aatgacttct aga
//
LOCUS       KCOD01000023             583 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 2564pyr ultra-conserved element locus
            uce-3046, sequence.
ACCESSION   KCOD01000023
VERSION     KCOD01000023.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 583)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 583)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..583
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2564pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>583
                     /note="ultra-conserved element locus uce-3046"
BASE COUNT          177 a          105 c          100 g          201 t
ORIGIN      
        1 aaaaattaac tgaattatta aaattatttg tcacgtgtta atattctcca aattagaaag
       61 ctgttattat gctgtaaaaa cctgtgatag tataagttgc tctcttacat aaataaataa
      121 atgaccgata ttactgaagg ctttaagctt caagaaaaaa atggaagaag tcttttatcc
      181 tggtttttag agggcattgg cagcttgctt ttatgaaaaa gtaacagcta aatgcactgc
      241 aaataatttg cagtaatcca gttcagtgat tcatgtgtct gctttaatgg gtcataattc
      301 aggataaagt aactgagtgc agtcagagtg cagacactgc ttatgccagg gacagtatct
      361 cttcataaaa cacacctcag cagaagcagt ttgccagccc cctaataccc tctgatgttt
      421 tgatgtcctg catatttttc cgattaagtt ttgagtgcca tgtttttagt tgtatttcca
      481 cattcattat cctcacgtag acccttcagc gggtttgcca tatatgatta tttttttaat
      541 gatgcctttc tttccacttc agcagtttaa taatctagca cat
//
LOCUS       KCOD01000024             425 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 2671pyr ultra-conserved element locus
            uce-2833, sequence.
ACCESSION   KCOD01000024
VERSION     KCOD01000024.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 425)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 425)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..425
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2671pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>425
                     /note="ultra-conserved element locus uce-2833"
BASE COUNT          132 a           78 c           67 g          148 t
ORIGIN      
        1 attagcctga cccgtattta ctcttctttt ctggaagaat tagcttgttt ctcaaagctt
       61 atgggaaaca ctaacagtaa tgaagcagaa aaatcatgaa tgttaaaact ttagggtgat
      121 ctgtagatgg ctgtaaacct ctttgttgcc catgtacttt tgatgagctt gcaaaatttt
      181 aaacctccta aattttagac agaacagttt tatttctttc aagctacagt ggaaataatt
      241 tccttatcta tcatttagaa tggtttaata ctttcattaa tccacacatc ataaagccgc
      301 aagtgatttt tatacatatt ccaatcactc attgtgcctc ccagcaaatt tttgctgatt
      361 ctgaagttaa acttaaggcc agtatctcca caatccaggc tatttgggaa ggtaatgatt
      421 taaag
//
LOCUS       KCOD01000025             520 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 2780pyr ultra-conserved element locus
            uce-6082, sequence.
ACCESSION   KCOD01000025
VERSION     KCOD01000025.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 520)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 520)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..520
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2780pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>520
                     /note="ultra-conserved element locus uce-6082"
BASE COUNT          175 a           95 c          102 g          148 t
ORIGIN      
        1 agtagataaa tggaaaagga aatcttaata aggtcctttt ttggagactg ctgtattaaa
       61 ttaaagtcat acataggttt caaagaaaat cgtatgtcgg tggaatggtg agcccacctg
      121 acaacgcatg ctaacagaat tgtaaatgta aagggtaatg cttgtcactt cctgacagct
      181 ctaaatggcc ttttagttca gtacgcagag ctgtcataaa aaaacataaa aatgcatatg
      241 cagacagctg aaactgcaat gcacatcatt atctgcaaat ggtataagta tcctgaacaa
      301 agggccttcc agtttaagga caagcataag acatttttct gcctctagcc ttaaaacaaa
      361 gtgctgtcaa gaaaacaaga ttctcagtgc cagaactgag gattttctgt caatcagcaa
      421 ggtgctacat ttgtacatat ttttctgacc ccaaatatga gaagagcatc cttaacagat
      481 gtgtatttaa cttctggcag atacatctgt ttcttctggg
//
LOCUS       KCOD01000026             582 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 2890pyr ultra-conserved element locus
            uce-3942, sequence.
ACCESSION   KCOD01000026
VERSION     KCOD01000026.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 582)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2890pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>582
                     /note="ultra-conserved element locus uce-3942"
BASE COUNT          171 a          134 c          120 g          157 t
ORIGIN      
        1 cttggtaagc aatgaatcct tcatgacaga tcaaacgtca gcctcattaa ctttctgctt
       61 cccacagcca cccttctaca gcaggaacac agcagaaatg tacgacaata tcttgaacaa
      121 acccttgcag ctgaagccaa atattaccaa ctcggctaga catctcctgg aaggcctctt
      181 gcagaaggac aggacaaaga gacttggtgc caaggaggac tttgtaagtg caaactggcc
      241 aggatgactg ggactgttta catttctctt aacagatgga gattaagaat cacatcttct
      301 tctccccaat taactgggat gatctcatta ataagaagat tacacctcct tttaacccaa
      361 atgtggtacg tatcacttct aattattggg ctgcccagga gcccggggga cggctgtgtt
      421 tggggagtgc aacttaaaca aagttgtggt aattgacttt ttgctgataa tccatctaaa
      481 tttagtgttg tctcacatgc ttcagttgca tggcaatttt aaaataatcc ccagcccatt
      541 ttaccgagtt aaggtacaga gagcaagtag cttccctaag gc
//
LOCUS       KCOD01000027             637 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 2999pyr ultra-conserved element locus
            uce-7865, sequence.
ACCESSION   KCOD01000027
VERSION     KCOD01000027.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 637)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 637)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..637
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2999pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>637
                     /note="ultra-conserved element locus uce-7865"
BASE COUNT          156 a          148 c          140 g          193 t
ORIGIN      
        1 tggtgaggta caagccagtc caggtgatgt gctcttcttc gttcagctgc ctgagtgcag
       61 cattgcgtcc ctatagatac atctaaaggt tgctgaagag taatctttcc ttctgcctta
      121 ccagactctc gggggatgtc agtccatagg ttgttagagc ttcctgttgt tttgtgcttc
      181 ctatagcaga aacagtatgc accttacttg tccagattac ctctaccttc cttgttcctc
      241 ccagaaatca cctgctaaga agctaactaa tgcacttagc aagtccttaa gctgtgcttc
      301 cagccgtgaa cctttgcacc caatgttccc tgaccagcct gaaaaacctc taaacctggc
      361 tcatattgtg taagtatctg tgtgctgtag acaaaataag ctctgttgct ctgaacacag
      421 caggaggcag gtttgtccag ctcaatgcat cacaagtgca aatttgaggg ttatttagtg
      481 aatagtgctc ttctggtgtg acttaaaaat cgatgggata ctgggacaca acattggaat
      541 gtccattctc ctcacgagat gtccatgcaa tttcatggag tttcagcgct ttgggatgta
      601 ttgatgctga gaacatcagt tctgtcatct agagact
//
LOCUS       KCOD01000028             698 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 3105pyr ultra-conserved element locus
            uce-5699, sequence.
ACCESSION   KCOD01000028
VERSION     KCOD01000028.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 698)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 698)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..698
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3105pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>698
                     /note="ultra-conserved element locus uce-5699"
BASE COUNT          188 a          138 c          132 g          240 t
ORIGIN      
        1 gttcctttgc tgctgtccct gcactgggat gacgggtgcc tttcttttcc caacagccag
       61 ctgcgccatc acaaacaggg ttttcaccaa ttccaggaaa tggtgacagt ctctctgcaa
      121 actttttgga agcttatctc cagctgtaca gtagggacag ggcttttgtt taatggaaat
      181 gaagcgtatc tttttcttac agatgcacca ctcactatgt tttatgtgtg ttttaggttt
      241 ccctttttat tttttaactt attaactctg acaagtaacc tcttggttgt gaacgattta
      301 attcacgatt catttttctg attcaaagtg aacacgagtg ccctaatccc ctaatgggaa
      361 ttaattgcat gtttcaatgc ttaactctga tcctttctca atccccactg ggacaagttt
      421 cttcctgaag gatctgtgtt tgttattcaa aacacaatct gaaaggtaat gaactcgggc
      481 cgactgaata ttaatgctct ttttattgtg agggaatgag ttgtttatgt cataaattac
      541 tctgaagtat atctgataaa atacaaaaaa tcattgtgtt cttcccataa gtgaaagcag
      601 tttgccagta aataaaggca cacacttttt gcttggaaag ctgtattttg atacagagaa
      661 aaactttact tcaccaaagg ggaagttgct tggctact
//
LOCUS       KCOD01000029             481 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 3214pyr ultra-conserved element locus
            uce-2758, sequence.
ACCESSION   KCOD01000029
VERSION     KCOD01000029.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 481)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 481)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..481
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3214pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>481
                     /note="ultra-conserved element locus uce-2758"
BASE COUNT          137 a           64 c          119 g          161 t
ORIGIN      
        1 attatttgaa ttagaaaact cctttttgat aaatgtcaag ttcagcggct catctgagtt
       61 ttcagatgat gaagaaacac tattgtgttc taaatttaca ctattagatt ttgttttgtt
      121 ctttgtggct ataatacttt tgggctcctt catttgtttt ggtaaagaca agtccaatgg
      181 ctcagcctga agctcctcag aagagaaact gtttggagtg taagaactac tgtgggagtt
      241 tttagaagat gtggaagaaa gatttaaagg agaaggagta ttgctcctag agtggtccaa
      301 tttatcaact ggcttaatat tggtaaaatg aggaggtttt gttagcctga gaggagtatc
      361 acaattagta acactgttat ggagttcagc tatagatggt gaagttatag agtccacagg
      421 ctttattgga gatctggctg acaaagagtc tttagtggga gtgttgttgg tggcagccag
      481 c
//
LOCUS       KCOD01000030             567 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 3324pyr ultra-conserved element locus
            uce-3823, sequence.
ACCESSION   KCOD01000030
VERSION     KCOD01000030.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 567)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 567)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..567
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3324pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>567
                     /note="ultra-conserved element locus uce-3823"
BASE COUNT          200 a           88 c           95 g          184 t
ORIGIN      
        1 aaaattaaaa atgcagaccg ttattggaca ttcaagaaac aattcaaaaa tgcatgttta
       61 tatttagcat tttaaaaatc tatataaatt tatattgttt gttctttgct tttctctgat
      121 agttagaaaa cagctgttct attgctttgg actttgactg gctagattgc aaggctcaat
      181 aatctgtctc agctcagggt taagtgatgg aattcattta aatgccccag aagtaatcat
      241 ccacaaagag tacattattt cttttttatg aattttcaaa cctaatactg atgggtggca
      301 tgcaattaaa cctgatcaat atgtaattta ggtgggctga catgttttca aattctcaga
      361 atatagattc tttcaatatt gcaagagctt agtgaaatac tcagccctta tgaaacagcc
      421 aaagcagttt agtacagcgc ctgttccaaa gacaaatggg gaagaaatta aagttacaga
      481 cactaacaaa gaaataagta aggaggcctt tcttaacagg ttcaaaacaa ccattttgac
      541 agaaattaac atttatatgt aaaggtt
//
LOCUS       KCOD01000031             584 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 3430pyr ultra-conserved element locus
            uce-4344, sequence.
ACCESSION   KCOD01000031
VERSION     KCOD01000031.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 584)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3430pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>584
                     /note="ultra-conserved element locus uce-4344"
BASE COUNT          165 a          129 c           86 g          204 t
ORIGIN      
        1 atgcttttta ctgacctatt atttttcttc gtggttccta aatgcacaca gacatgaatc
       61 aaaacactta taaacaagaa gtttttctct acctgtacac aatgaactcc ctttacatct
      121 cattttgttc tccctcagca ttgattgatt gattgctcac agcttgcatg actccctgct
      181 gccctagatc cgtctccgct cttcacactc catacagttc ctgcatcatt gactttctgc
      241 cagccatttt gctgccagtg catgagctga catttaatga tctttagacg cagtaatgtc
      301 acatttatca ctctttatca gttgtgacag acctaaattc aaatgcaaac atgaaatgca
      361 gactgaatcc agtccaaaca gtgatatgtt tttgagtgac atccatcaag gcacgttgag
      421 aaagaagtga aaaattacct gtttccaatt attttataac tagcaggggg ttagtttttc
      481 cttgcagttt tcagggaaac cccatttgat ttccaaaata tcatctcata tttgaatgtt
      541 aattttcagt attcctagat tttacatttt caatataatt gaat
//
LOCUS       KCOD01000032             775 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 3540pyr ultra-conserved element locus
            uce-3725, sequence.
ACCESSION   KCOD01000032
VERSION     KCOD01000032.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 775)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 775)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..775
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3540pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>775
                     /note="ultra-conserved element locus uce-3725"
BASE COUNT          251 a          141 c          200 g          183 t
ORIGIN      
        1 tttaaaacgt ttagcagctc tcctaggcag ttttgatata cctgaggtaa gtttgttgct
       61 tcagactttg agcaccatta ccttgcaaaa agcaatgcac agtcatccac gtgcgaagat
      121 cttacctaat acaccactag gttcaatagg gtactcaagg attgatgtag ctggtgccag
      181 cgtgtagggg tattcatatg gtgtgtaaat taagccggcc tcgggtccgg gtggaactat
      241 tgcagcggtg ggatgaggag ttccgtttgg catgacagcg gtttgtattt gtctgatcaa
      301 aggcattatg gtagggccag ctggcgtagg agtacgcagg gcagctggtg ggagaacagg
      361 cgcaggccca gtgataatcc ttggagcctg ggctgttgct gcaagagaaa aggcaagggc
      421 tgctacagta agcaaagaaa ttcagaggaa agtatggaga tagcagtaca aaacgtggaa
      481 agaatgggaa aaagtaggaa agaagaaaaa taaaaggaaa tcattagtac atgcgctgat
      541 cacacagtgc caaagcacac cattcaaatg caaacagctt tccattttcc agtgtgatta
      601 agtatgaaca tgcaaaataa aaaaggcatt gtaaaacagt gaggtagatt tctcaaacag
      661 gttacacagc acgaaagctc catttagacc acatttcttc atttatgcta tcaagactgc
      721 atgagactga gatgcatgca ggaaatacaa ggaaaatact gtctacagag tacaa
//
LOCUS       KCOD01000033             372 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 3642pyr ultra-conserved element locus
            uce-4995, sequence.
ACCESSION   KCOD01000033
VERSION     KCOD01000033.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 372)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 372)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..372
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3642pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>372
                     /note="ultra-conserved element locus uce-4995"
BASE COUNT          108 a           58 c           58 g          148 t
ORIGIN      
        1 taatgtcaat atttttaacc tgaaataaac cttgtaacaa attcatgtat tctgggcagt
       61 ggaaattatt tccgttaact ctcttttctg catatcatca atttgctttt tactcatgtt
      121 tctcctactg tcgctgtaag cttacttgtt gttttttctt tccttttctt catgctgtcg
      181 tttagagccc tacagagaga caagtatggg agtaaagcta aacattgcat atcaaatgta
      241 atttttttta gttcactttt attgcatcac atatagatga tgtagttaat aaaggaaatt
      301 aatctcacag ttttgaaatc gaaagactat gaatatacag atgtatatat atgtgtatgc
      361 gtgtgtacgt at
//
LOCUS       KCOD01000034             356 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 3743pyr ultra-conserved element locus
            uce-848, sequence.
ACCESSION   KCOD01000034
VERSION     KCOD01000034.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 356)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 356)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..356
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3743pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>356
                     /note="ultra-conserved element locus uce-848"
BASE COUNT          114 a           55 c           54 g          133 t
ORIGIN      
        1 tcgtatgcca gtggtactta gtacctcttg tatataggtt attgcaaata ttgttctgaa
       61 atgcttaact tcagtttttt aaagtaaata attgttttaa atctattttg taaagatata
      121 aaaatacaat agaatttctg gagtacagat taaactattt gcactaacac acgtgatgtg
      181 catgatttaa taaaataact ttactctccc tatgcatgtt tgagttgaat gtcatttgaa
      241 aacaagagat tcatgctaag tttcttttgc actagatttt gccacagtta ctaggcacaa
      301 tgtctgcagc atgtccagta agagcaaaag accttttttt accttttatt tcacat
//
LOCUS       KCOD01000035             626 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 3849pyr ultra-conserved element locus
            uce-2746, sequence.
ACCESSION   KCOD01000035
VERSION     KCOD01000035.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 626)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 626)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..626
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3849pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>626
                     /note="ultra-conserved element locus uce-2746"
BASE COUNT          195 a          113 c          109 g          209 t
ORIGIN      
        1 tattttagta tctaattttt cttaacatct gtttagtcat tttataggtc tgcttgcctc
       61 ttattgatta aggtagttgt gaatccataa cagaggacag acttatgccc taaaggagtg
      121 ggattatatt atgcaaataa ttcaaaaata tttttaagca agcattactt cagcatttag
      181 atattggcta aagcagcttt aatatgcaag acaggatgtt aggtgcttag ctgatccaaa
      241 tgccagtcta tagatttgaa agactaaaga tcacatcact gggaggttga cagaagtgac
      301 actttgcaaa gtgccaatga tttatgccaa tgtcttgctt gatgatactg ttatagacag
      361 cactgtcatt acaaagtccc taacgacttc agtctacatt tatggtgcac aaattatagg
      421 tgagcccaaa gatcgaaacc ttcctgactt ttagatttca atgaccaagt aattctcact
      481 aggttcgctt cttgtatgtt gcctgatact tttttgcttc tgcatcgtaa ttagattgca
      541 gtaacaaggg caaaatatag gttcattcta tgttttttag ccgtatctca caaacaccaa
      601 aatacactaa acttgatact ccaaca
//
LOCUS       KCOD01000036             594 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 3957pyr ultra-conserved element locus
            uce-2030, sequence.
ACCESSION   KCOD01000036
VERSION     KCOD01000036.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 594)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 594)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..594
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3957pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>594
                     /note="ultra-conserved element locus uce-2030"
BASE COUNT          198 a          117 c          105 g          174 t
ORIGIN      
        1 gaatactaat gaaactcctt agttagcttt ctttgtgata agaataaaaa attggagcta
       61 tgttcctcta gaatctcaag caatttttgt cctttattct gatagaaaga ttactgacag
      121 tagagaagga gagcaaagta atttcataaa atatctgcat ttttaagaat gcttttgttg
      181 caaaaatgtt ggcgtgcaat ttcttcaatc tacttttaag gctgtaaaga aaaagtacct
      241 atttgttctg cactgcaaca atgccagctg cattcaatca actaaaaagc tgcaagccat
      301 aaaccttcct ccacagctat agaagaaaaa aaggcagggc cataaaaatt catcaggata
      361 atgtagagat gaggcgtgtt tgaatcacca tccctgcaat caaccaatca ctcatcctgt
      421 ggcatttaca gcacatctca ttcccctgtt ccttaaggac aattgatttt cctgattcca
      481 ttagcataac ggcaaggaaa atgactgcag tgcaatattt ctggaaactt ccaacaagta
      541 tgctgtgtgc tggagtgtga ccataataat aagctaccta gctagcaact gcgt
//
LOCUS       KCOD01000037             675 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 4064pyr ultra-conserved element locus
            uce-5645, sequence.
ACCESSION   KCOD01000037
VERSION     KCOD01000037.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 675)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 675)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..675
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4064pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>675
                     /note="ultra-conserved element locus uce-5645"
BASE COUNT          207 a          136 c          125 g          207 t
ORIGIN      
        1 tttgcacaac tagatttgcc cacacatgtg tccacagaat aaataccttc tctgtttgga
       61 acccatttgt ttaaaggtta atgcataaac cccaaaaaaa gatggcaaat tcagcataaa
      121 aagcaaaatg taatcacctt caggaacttt gaccatttag gagtctgcgt gggtattgat
      181 ttgaggcgaa tattctaaag tttgcattac cctttgaaaa gtgctaatgt agttcttgtc
      241 actttaaatt aactttagat gagagggact gacagaaaca tgaagatgtg tgaactatat
      301 ttgactgata ttctgtcaaa tattgcatgg ggttatgatc cacaactttt cccatctgct
      361 gctcaaacct gaatccttga atgcacaatg gattaattac catattttgt tctgatttca
      421 cttaagagac tgtgaatgtt aaatgtaccc ttacctgcct tctttctaag ggtaaggtat
      481 agaggagggg acagggtgtt ctttagcaat ttacacccgc atagactgac acttcttctc
      541 aaataattag attcccagaa gttaaccgga gtaacacagc actcagaatt tcattcactc
      601 cttttccccc tcagtaataa aagcaggagt gctgatgtag cacattccat ccgctgcgct
      661 ttgcaagcag cagta
//
LOCUS       KCOD01000038             660 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 4173pyr ultra-conserved element locus
            uce-539, sequence.
ACCESSION   KCOD01000038
VERSION     KCOD01000038.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 660)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 660)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4173pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>660
                     /note="ultra-conserved element locus uce-539"
BASE COUNT          214 a          127 c          109 g          210 t
ORIGIN      
        1 cccacagcaa tagtaatttt actttgatct catagcagcc aaactattaa atgtaagcat
       61 gctcataagc aaggtacaag gcaggcacag cctatgattt ctagtagaag gtcataaccc
      121 agattttttt tttaaataac tattacaatg aggaacagag tatagccaca aaaggaatag
      181 ttataattta tgcctgactt acttcagcag aatatagttt atttataaac tgcttatggc
      241 aaactctgta tgcccctgtt ctatgcatgt gctgaactgt cttctggtaa attatttaaa
      301 ttacacctag cagtaattcc tgaggacttt catacttcat tttctctatt aatgtaacag
      361 ggaaaagctg ctttgcaagg attgctctaa attcccagag tgtgagttcc aaactctgta
      421 tgtgttgcat tatgcctgtc aaaaaacttg tcttctcctg aaatttatta ctgaagtctc
      481 tccactagaa ctactcattg aagccttacg gaaagctcat acatgattta agaagctaac
      541 agcactgaaa gaaataggtc aggtccctga atttaagcta ccttcactta ttacttatgc
      601 aagattatgc ataatttagc acactgctga atatgcaagg gcagaataat tgtttaccaa
//
LOCUS       KCOD01000039             841 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 4286pyr ultra-conserved element locus
            uce-987, sequence.
ACCESSION   KCOD01000039
VERSION     KCOD01000039.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 841)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 841)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..841
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4286pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>841
                     /note="ultra-conserved element locus uce-987"
BASE COUNT          297 a          147 c          130 g          267 t
ORIGIN      
        1 ctgtaaccct tctatacctc caccaaaaat ttacttgcaa aattaaatgt attcctttac
       61 tgcattgcat atttagtgct atccaaaagc acaataaaaa tatactcaat gataagacct
      121 acacacaaga tgttaaaaag tacactaact tttactaaat gttacaatca atgatgtaac
      181 ttatgtaagt agggttgctt tgtcatatat tgatagttac ctcactttca catccacatt
      241 aacttgattt taaatgcaat taatacatat agtcaaggaa gactaatgga ctacattctg
      301 cacttaacct ggtggacatt ttcaaatggc acaagtgacc agtgcaaacc tattttgcat
      361 tgtaaacgac taaataaatc ttaatggatt aagaatgatc agctatcaac acacaaggga
      421 aattaagtgc tgaaatgcct acattgatta ttttaaatta ttagccttac tctgttcttg
      481 aatttgtatg cttttagtga gctttaacac atttacaaga cttattgact ataattacaa
      541 gagaattcaa gtaatggaca catcaattat aagcaacatg tcttgaccag acagttgcat
      601 aaagaattct aaagagagct ccattagcat cctccccctt agttttattc agttttatct
      661 gccgtaagag ggcatattaa gggcttatac agctgttctg accatgtgaa catgagcatc
      721 aaagacttaa cactgcattc gaagttggat attagctgaa gcaatacaga taactacgtt
      781 attgacagga cagaagtaat gctgaaagta ttaagtatgt gagttattgg tatacatgaa
      841 t
//
LOCUS       KCOD01000040             764 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 4396pyr ultra-conserved element locus
            uce-1232, sequence.
ACCESSION   KCOD01000040
VERSION     KCOD01000040.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 764)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 764)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..764
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4396pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>764
                     /note="ultra-conserved element locus uce-1232"
BASE COUNT          220 a          158 c          155 g          231 t
ORIGIN      
        1 tgctaaattt gcttcgagca tggaatttaa agtttcagat gcacaggcag taaatgtggc
       61 tattaagaaa ccatgtattc acgttaactc cttggctgtg gcagttttag tgcattcact
      121 gctggctatg gacatcaagc caggaaaatc caactcctga tgcaaaagga ttaaatccag
      181 gcactgccaa aaattttttt tgtactctgc agtttgtttt acttagggaa acggcctggt
      241 cataccctgc agcatgcatt cattacagtg atctttgact ggcagatgca gagtaataag
      301 atgcatattt tagtgcttat tataataccc tgtccaaaaa caacttgaca aatttgtgat
      361 ttcgacagta tctcattttg ctggctgcag tgctctgtga ttgcctggtc cacgtggctt
      421 ccagattatg cataccacca atactgctca ttaaaatggc cacagttcac cagtttcggt
      481 agcttggaac gaacttggaa tgaattatta tacaacaaag aggctgctgt catgcagaac
      541 aaaagacaag caaaagagag cttcggctta atgaggctaa gtgagtgtct cccctgcatc
      601 accagctact tgacggcctt tgagcatgga tttttttctc cacaggccaa aacctttggt
      661 ctattatttt gtgtttatgc accttgaggc taatatacat tttaatatgc tgcacatgga
      721 gaaaaaaatc agccattaga ttagaacatg tgcactccct gtta
//
LOCUS       KCOD01000041             623 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 4602pyr ultra-conserved element locus
            uce-5630, sequence.
ACCESSION   KCOD01000041
VERSION     KCOD01000041.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 623)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 623)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4602pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>623
                     /note="ultra-conserved element locus uce-5630"
BASE COUNT          204 a          140 c          103 g          176 t
ORIGIN      
        1 cttaatctaa aataaattct tcacagataa agcctccaat ggcagcctta gctctaggat
       61 aagtgaaaca ttcttccctt caagtaacag tgtacctgac tgaagtgcaa gcagctttgc
      121 tcatctcctg tttgtttccc aaatgtggac aacaacaatt cagctgtagt gcaatttgct
      181 attggttaag ttcctcagca atgtcctgca tgctttcagc aaatactaca actgaccatt
      241 tgcggctgca atcagttctt gaaaagtatt ttcaaagcag cgttttaaat cgctgtaagt
      301 taccacaagt acactcttct catctctgga aatgaggctt attttttctg gcacaccagc
      361 atctaactgt aacaagaatg caaaagataa aataaaagaa gtgtgaaaga aatggcaaaa
      421 catttcccca acaacaaaag caatcaattt cttggcaagt acattgttat ggtgcagttc
      481 aaatctgcta acaggacaca aaggaaggat ctgaattgca ccacaacaac gtccttgcca
      541 aaaaatcgag acattttggt cttaacctga gggacattcc caactgtttt cttccctttc
      601 cacaaagcta ataatcctgc aat
//
LOCUS       KCOD01000042             732 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 4712pyr ultra-conserved element locus
            uce-4107, sequence.
ACCESSION   KCOD01000042
VERSION     KCOD01000042.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 732)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 732)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..732
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4712pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>732
                     /note="ultra-conserved element locus uce-4107"
BASE COUNT          175 a          221 c          154 g          182 t
ORIGIN      
        1 caacctgact catgaccttt gaacacttca ggttggcaat gctgctccct caattggcat
       61 cagtggagtt agaccaggga tgagtttggc ccagcgcttc taaaagatag atgtatagca
      121 ctgttccttg caatgtattg cttgatatga tctgctgttc tcttgggggc caaaagaagt
      181 gggttatctt agaaaattct atcatcacgt gatacaaaaa atggtattta cagaattgtt
      241 ttcccccgtc ttttgttata attttttagg tgcttcagag ctgggcccat tttcagatcc
      301 caggcagttc acaagcattt catccctcac tgagagccgc ttctccaacc cacgaatgca
      361 ctatccagcc acctttacct atacaccgcc agtcacctca ggcatgtcac tgggtatgtc
      421 cgcaaccact cactaccaca cctacctacc accaccctac cccggctctt cccaaaacca
      481 aagtggacct ttccagacca gcagcactcc atatctctac tatggcactt cgtcaggatc
      541 ataccagttc cccatggtgc cgggagggga ccgctcccct tccaggatgc tcccgccgtg
      601 caccaccacg tccaacggca gcacgctgct aaaccctaac ttgcccaccc agagtgacgg
      661 ggtggaggcg gatggcagcc acagcagctc cccaaccgtc ttgaattcta gtggcaggat
      721 ggatgagtct gt
//
LOCUS       KCOD01000043             736 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 4822pyr ultra-conserved element locus
            uce-4205, sequence.
ACCESSION   KCOD01000043
VERSION     KCOD01000043.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 736)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 736)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4822pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>736
                     /note="ultra-conserved element locus uce-4205"
BASE COUNT          222 a          120 c          134 g          260 t
ORIGIN      
        1 ttctcttcag atcattgatt ccagtttgat tctgctcata catcaatttt ctctaattct
       61 aagtaaatat aagtcacatt ttttacatta tacccctcag aggacttttt tcatttcagt
      121 aagcattatt tgaataatca ttacagtatt cataacgcgc tgcttgtgtg acagtttttg
      181 aactttaata ttcttttttg tagtgtgagg gcttagcaga ttataaaaga gacatattgt
      241 ttataatgtt tctgcaccac aacaaatgat gcacttctag catctatgaa atggcagtag
      301 ttttctaaat ttgtgattct tctgtgttca gcagtcaaga acagttgtac atctgctcag
      361 cacagacttt aggagaccat gaactttaat tgaggaaaaa taatgagggt tcagggacca
      421 ctgatacaga gtcggttggt aaggcaggtg ccctgctgcc agatcaatgg attatttact
      481 cctttgtcat aaacaagaaa cagttgggtc tttgtagaga ttacattcat attccaaagc
      541 caggctgcct ttttctgttt gtaaacatgc agtatattga atacttttga aaataatagc
      601 tttgctcctt cattaaataa tgtaatgtta accttaatag aatttaaagg aacaatagtg
      661 ggcatattaa ttaataatct gtacttcatg tgcacagaaa ggattctggg ggtgttggag
      721 catgtttaca catgta
//
LOCUS       KCOD01000044             325 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 4926pyr ultra-conserved element locus
            uce-6207, sequence.
ACCESSION   KCOD01000044
VERSION     KCOD01000044.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 325)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 325)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..325
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4926pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>325
                     /note="ultra-conserved element locus uce-6207"
BASE COUNT          108 a           66 c           81 g           70 t
ORIGIN      
        1 ctggactcct cgatgaacgt aacattgcac acacacacac ttgaggagag agagagaggc
       61 gctcgcagtg ggcagacaga cacacgcacg cgccaggtca aagaactctg atacagtgca
      121 agaattttcc caaaatgatt ggatcatcat taccaaaaac ttgccataac aacaccaaga
      181 aacaaagaaa tgtttaagcc acactgtttg actgggattt ttcctgcttt ttttttttta
      241 aatgtttgcc acacagagag aaaaagggtt taagtggtaa tgggagaggg acagacaggc
      301 tcacagatgt gagcaggaag ggggg
//
LOCUS       KCOD01000045             660 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 5031pyr ultra-conserved element locus
            uce-1323, sequence.
ACCESSION   KCOD01000045
VERSION     KCOD01000045.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 660)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 660)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5031pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>660
                     /note="ultra-conserved element locus uce-1323"
BASE COUNT          199 a          134 c          118 g          209 t
ORIGIN      
        1 caattactaa tatttaacag gtgtgctctt tcaggtatac ggacatttgt ctcttttaca
       61 tctatatcta caaatacttt gccttacctc tgctgtttgt aattcaaatg ctacagactc
      121 aagaatgaca ataaaaatat gtacccatca aagcaatgac tttttcaaac tttttgttca
      181 gatcggctaa gacagatgcc actttgactt tcacttacaa tagcacgtca aaccagagaa
      241 acgatcagcg tttggatctt cagcatgggg aggaaaaaac agctgagttg ttttttcctg
      301 ttttagcttt attgcacggt taaaagcaag gattactgag gtcattaagc aacattgtct
      361 ctgtgacatg attagtcagg tagcaaagtc catttgtcac ctgcaccagc aaattgagtt
      421 aatactgcac tacaggctat ggggactgta taatatcaac ttgattacat caaactggct
      481 gcaaacttga cacctcactg aatttgtcgg cattaatcgt taagcctgtc acaaatccat
      541 caggtttaca gataattagg ggcctgttaa tgaagctggc taaacaacct tacctttttt
      601 gataattaag aagccgcttc attacgaagg gaccatttcc tctgagcagt atgtcttttt
//
LOCUS       KCOD01000046             411 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 5135pyr ultra-conserved element locus
            uce-3988, sequence.
ACCESSION   KCOD01000046
VERSION     KCOD01000046.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 411)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 411)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..411
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5135pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>411
                     /note="ultra-conserved element locus uce-3988"
BASE COUNT          118 a           86 c           70 g          137 t
ORIGIN      
        1 cctgcgttgc acagtcatta aggggtctgc tgcaaaagcc tgcttgactt tcttcccact
       61 aattacatca tcagatcatc acactgctaa aatcaggcac agagtacttg cacacaacta
      121 aatccctgct tttaattact attttagtct ctttttcctc gtgacatgtt ggtgatagat
      181 cattattttt tcagcaattt gttcgcattt atatgcaata taattggatc tgattaatta
      241 ttatgattaa tgactgcaga atttccttgc aaagctatta atactgggag tatcaaatga
      301 aagacatgga caaattaaag ccaatggagt cctgttgctt gtacttacaa tgcctgggct
      361 caagtaaccc tttgctgctc cagccctgca ataaatacaa gggtttatct g
//
LOCUS       KCOD01000047             756 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 5346pyr ultra-conserved element locus
            uce-805, sequence.
ACCESSION   KCOD01000047
VERSION     KCOD01000047.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 756)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 756)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..756
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5346pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>756
                     /note="ultra-conserved element locus uce-805"
BASE COUNT          223 a          172 c          132 g          229 t
ORIGIN      
        1 tattggtttt gtccatgaga aataaagtac tttacttaac cataaaacgg atccaggcca
       61 aaaaacatgt taacaccgct agcttgtaat cgatgcaatc acagtattac tatctaaatt
      121 tttgtttact tttcaacaga ttggtgtctg cagatcatgc tgtctcacac tgccgttcct
      181 ctgtaacctt aaccattatt cctactgtgt aaagtgaagc acaaatttaa ggtgacaaag
      241 caccagttgg ctgatgtgaa gtatgctacg aaagcagaaa cctctgaaag cttcacagcc
      301 attatgaaat aactgaccta tatgaaactg ctaccatggt tcacaaattt attgtcaggt
      361 tccagcctct agctgttctc tgattgttct aaatacttga caaactgaag ccttttcact
      421 ttccgttgaa attgcctcat ctccctgtca gagcgccatg ggggactcca ttacttttct
      481 gacttctttc ccctactgac aagtcattta gctggcttct tgttgtgaag gctgtccatg
      541 tcaaattagc cagggcccct attgtcctta ttaccactcg aaaagccatc atgagtaatg
      601 ctacggggtc cctcagttgt catcatttgt cagaaagaaa gggagtgtgg ttacatatag
      661 ctgacaggta atttcagtgt ctacaattac cccaattagt cttgtcataa acaattcgat
      721 aaatgcacac caatacaaac agataaacac accaag
//
LOCUS       KCOD01000048             601 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 5454pyr ultra-conserved element locus
            uce-3484, sequence.
ACCESSION   KCOD01000048
VERSION     KCOD01000048.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 601)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5454pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>601
                     /note="ultra-conserved element locus uce-3484"
BASE COUNT          182 a          123 c          123 g          173 t
ORIGIN      
        1 tttgcatttg tcaagatgag aatcctggat ttcttctgat gtgttctttc tgtcagaaat
       61 cttgtgtgcc tgactaatct ctgccttgct gatgctattg aatgagcttt gtatgtgaaa
      121 gctccactaa tccttgtact tactgtttga atgtttgcta caggaagcga gcagctgcaa
      181 agcatctaat agagcgctac taccaccagt taaccgaggg ctgtggaaat gaagcctgca
      241 cgaatgaatt ttgtgcttcc tgtccaactt ttctccgtat ggataacaat gcagcagcca
      301 ttaaggccct cgagctttat aagattaatg caaaactctg tgatcctcat ccctccaaga
      361 aaggaacgag ctcagcttac ctagaaaaca attccaaagg tgcccataac aattcctgca
      421 ctgacagaaa aatgaacaag aaggaaatgc aaggcccaag agatgacttc aaaggtaaga
      481 tgtttttgta aaataaaaca gcagaattca ctctggtggt gttctgctga ctttagtaaa
      541 atacagtatt actatggttt tggaaaaatg ggaatgctga acacttccag acctagatct
      601 t
//
LOCUS       KCOD01000049             727 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 5564pyr ultra-conserved element locus
            uce-3010, sequence.
ACCESSION   KCOD01000049
VERSION     KCOD01000049.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 727)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 727)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..727
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5564pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>727
                     /note="ultra-conserved element locus uce-3010"
BASE COUNT          232 a          123 c          126 g          246 t
ORIGIN      
        1 actactgaat tcaatgttcc ctcttctatg ctttatttct gttgatgatt tcttgtaaaa
       61 gtacaatgat ctcagttata tgattgctct accctttagt ctcgatgcat tgtgtaaaat
      121 ataatgcagt acagatgtca acctaagaac taaatagctt atatttctaa agaaccatga
      181 aaaaatatta acactataga aacaatggtt cagtaattac tttttgctgt gaagtgaggt
      241 taggcattta tccttataga ttcctaatac acttaaagtc agcactgccc ctgtggtcct
      301 tttacctttg ttgataaatg tattgtacag gataccttgt acgaccacta cagtatttga
      361 ggtcatgcta ggctgttagc acaaatggtg tgaacaatag tttatatgcc acttaactcc
      421 ttgggagaaa cagttaacct tgccagagag gacagatcag tcatgtatag ttattaaagt
      481 ctagaaggtt ttgttatgct ctgaaatact tttatggaac tacaatactc tggtatgagc
      541 tttaccaagt agggaagcaa caaagtcaag aattgtcttt gccacctttg aaaaggataa
      601 tatttaccag acctactttt gaaacacaaa ttttgatata tttaatcact agaattcctg
      661 aacaccaggt agctattaag tcactagtaa gtttacatta attgtgaatt tgatggcctt
      721 gaaatgg
//
LOCUS       KCOD01000050             595 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 5674pyr ultra-conserved element locus
            uce-2566, sequence.
ACCESSION   KCOD01000050
VERSION     KCOD01000050.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 595)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 595)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..595
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5674pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>595
                     /note="ultra-conserved element locus uce-2566"
BASE COUNT          153 a          129 c          129 g          184 t
ORIGIN      
        1 ttggctaaag ccatgctaag gccttcagtg agccaggtct ggccatgcaa ggttaacttt
       61 attgtgcctc gtagggattc tgtaattgat gtgtttttag tctgtgcgtg agtgtcaacg
      121 caaagttaag gcactcctca ttaacctgct ctctgcacct cagggattcc ttgggtatct
      181 tggtggacac ctttgcgctt ctgaccctag tatttcccaa cgaggagaag agctgctaat
      241 ttgtttcttg acaaatgtcc cattttcaca ggcagttgaa ctgaactacg cttgtgctcc
      301 attcaaacat gtcaataaac attattgcaa agatgtacaa gcaataaaaa actcaccttt
      361 atttcttctt gccatgaatt tacatgatgc tctaaatttt actcttccag agggaagtct
      421 tgggattttc tctttaatgt caccccagtt taaaccaagg acctttgctg ccttctccat
      481 gagtgctggg gatgggaaca ctgcatcaga ggtacagata cacgtctgaa gttgcagtca
      541 gactcagtta aaagatgaag aggtgaagtt gccattctct gggataagct gctat
//
LOCUS       KCOD01000051             371 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 5783pyr ultra-conserved element locus
            uce-743, sequence.
ACCESSION   KCOD01000051
VERSION     KCOD01000051.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 371)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 371)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..371
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5783pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>371
                     /note="ultra-conserved element locus uce-743"
BASE COUNT          106 a           72 c           73 g          120 t
ORIGIN      
        1 tcttcgttcg gtctgtgtgg aggtttatac tgcccaatgt tgaggatgta ttatttatac
       61 tgactgtagc cacgccacag aacacacgag gagagtttgt ttagcaacaa aaaatatttg
      121 ctacaggggc agtctggcaa tattgcttgt taagacatgc tatttgtaag caaatttata
      181 tgaaaagtat gcaatgtcta atactaaact actccagccc cagactgaag ggtgatttta
      241 caaacgtcct gcagcactca atcattcctt cattttaatg tctttatttt atgattttgt
      301 tgatgaaata ctacttaccc agtgctcaaa attcctttta ggctgcaggc actggctagt
      361 tgacacggca a
//
LOCUS       KCOD01000052             524 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 5893pyr ultra-conserved element locus
            uce-1616, sequence.
ACCESSION   KCOD01000052
VERSION     KCOD01000052.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 524)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 524)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..524
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5893pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>524
                     /note="ultra-conserved element locus uce-1616"
BASE COUNT          168 a          112 c           96 g          148 t
ORIGIN      
        1 tgactttgaa ctaaacatca attaatgcac aagttaactc caataagcaa atttattggg
       61 gcttcccgca atcacttcat cttccagtgg tcacttctta attctcacga taaacaagac
      121 atcacataat gtatgctcca aagctgggac ccttcagctg cgatccatgg ccaatataag
      181 ctcatttgaa taatcaatat gacaacctta tttttctaat gcaaacagga ttgctacagt
      241 aaggtgtctc actgccacat cacagtcatg gcctctttta acccctaatt agatttaggc
      301 gattatccct gctcttcctt acaagtgtac agcctggata agggatgaca aaaactcagc
      361 ctttgcagac tgcaggttat ccagggagat acagaagatc agcaaacaat tgttattcat
      421 gagatagtca cagtttgcca gaaaatagcc cagaggggtt acacagatgg aaattcaagg
      481 tgatgttggg gaattatgtt taattcaaat tggttatcac aaag
//
LOCUS       KCOD01000053             722 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 6000pyr ultra-conserved element locus
            uce-965, sequence.
ACCESSION   KCOD01000053
VERSION     KCOD01000053.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 722)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 722)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..722
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6000pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>722
                     /note="ultra-conserved element locus uce-965"
BASE COUNT          255 a          114 c          120 g          233 t
ORIGIN      
        1 atagtgtata ttttatgaaa tgattaatac acactcatgc ttttgaatta acatatttaa
       61 gcgtacataa taaattggga attcttacaa atagataaga aggttttaac tgcattatag
      121 acaaataaga atacaataag cttgaaacaa tgcatttaag aagaagaaaa acaaagatgt
      181 aaggtcagac aatatctcaa ataacatttg gaaaatgctg ccaattgttt ggataactgt
      241 acaatgccaa agcctcttat aacattgtta agtctttatt cagtaataca ttatcatgca
      301 tatttcatag cagggattac taagacagaa ttgtgtgtca tttttgttgt atgtctttat
      361 aattacacct tgaagccaca actagatttt ttttttacta catattcatg aaaagcggac
      421 ttgtaatttg ataaagggta gcttgtgttc tcaactccat tcaaacagca tcatgaagca
      481 gaattaaagt aggcatctgt gttctcccgg cattaatctc ttcaagcaca ttccagctgc
      541 tatgatgtgc aagagggaga taagtcctaa acggactaaa gctaagcaag ccagacaact
      601 ctattattgg cttcataatt gcttaattaa acttttgtca ctaatcatta tgagggcaat
      661 agagctgtta tactggcttc tgttaagcaa aaatcaataa actgttggag ttaatttcgc
      721 cg
//
LOCUS       KCOD01000054             563 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 6109pyr ultra-conserved element locus
            uce-7854, sequence.
ACCESSION   KCOD01000054
VERSION     KCOD01000054.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 563)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 563)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..563
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6109pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>563
                     /note="ultra-conserved element locus uce-7854"
BASE COUNT          119 a          119 c          178 g          147 t
ORIGIN      
        1 cttttaattt aagctctcct gaggctggat gccagcacgg agctctgctt ggctagtggt
       61 acttggggca agtgtgctgc aacactagct ggggtaaatt ctctgtggaa gctccactat
      121 ttatgggtgg agagggcagg gggatgcttg ctctcccacc ttcccccatg ttgtctcaaa
      181 agtccttggt gcatctttga ttaggtgtag gtcaaaagaa tttccacatc gtgaccttaa
      241 taactggggt tgattggcag gcagtctgcg gagagggagc agcctgttcc tttcatctcc
      301 cttggtgccg tgctgggaca atgggccagc atattttcct tgttgttcct catttgaaaa
      361 gggtctggta tctctactag gtacctgtga catgggggtc ttgattgggg tctcataaag
      421 ggccctgtca ctgtgtccaa aggccaggaa tacaaaggcg gtcagtgggt gggggtctca
      481 gctgaccact gaagaaggga ggggagggtc ctggaagcag tggagggaga agcaacccct
      541 gatgggagac cttaaagggg gga
//
LOCUS       KCOD01000055             505 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 6217pyr ultra-conserved element locus
            uce-7641, sequence.
ACCESSION   KCOD01000055
VERSION     KCOD01000055.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 505)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 505)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6217pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>505
                     /note="ultra-conserved element locus uce-7641"
BASE COUNT          143 a           90 c          100 g          172 t
ORIGIN      
        1 agcttatgtt tcattaaaag attttcctta accggacctt tcagtgttct ctggaacaca
       61 actaatgaaa cttaaatgaa agtggtgttc atttaatttt gatgatattc tctattttgt
      121 ctaaaataca tttttaattg ccctttttct ggggagctaa tgaggggaaa aacttgtttc
      181 tgagaaattg aatcccagct gtagtcgcag ataaggctga cattcccttc ttagaaagaa
      241 gcaatcaatg ctgaatgtat caggtgagtt catttctctt gctctgcttt aatagcttat
      301 aaagaagatt gattaagttc ttgtctgata gatcaataaa ggaatgaaag tgagctttcc
      361 ctccttcaag catgggtttg gcatctgctg gggaatgtag gaactgaaga gaagcaatac
      421 taacttggag ggattccacc acgctcattc ctatcatttt gcttacagcc atgggattca
      481 ccattcagct tggttccttt gttca
//
LOCUS       KCOD01000056             626 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 6329pyr ultra-conserved element locus
            uce-7783, sequence.
ACCESSION   KCOD01000056
VERSION     KCOD01000056.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 626)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 626)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..626
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6329pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>626
                     /note="ultra-conserved element locus uce-7783"
BASE COUNT          187 a          100 c          136 g          203 t
ORIGIN      
        1 ctgaagcatc acaaattgat ttcctttaaa aataaagaaa aatgcgtgcc atttgtttcc
       61 ttaaccatga tgggcttgtg cctctcttgt agccccacag aactgttgcc tttttgatgt
      121 actctcttgg ttaagctgaa tgtattactt tcactgagaa tacatgattg cgttggtgga
      181 aggcaggagt caataattgt ccatatgtgt gtttctttta gtggaggcga tagtggagtt
      241 tgactacaaa gctcaacatg atgatgagct gacgatcact gtaggtgaca taatcaccaa
      301 tatcaagaaa gatgatggag gctggtggga aggacagctc aaaggcagaa gaggtttgtt
      361 ccctgacaac tttgtaagag tgagtacaaa gtggaactgt tcttgtgttg tgtgctttat
      421 gtactgtgtt gttcaggcta atatctctta tatccaaaac cataatatat tgcatgtaca
      481 catgtatata cacatatact gcatatatag aatgcagtgt tttatcagtg ttacaaagtt
      541 tgcaaagaca agttgaaaat aaaaatttct ctgctgttca gtgataatat ttgacttcgt
      601 ggtctgagaa cgttattcta gaacaa
//
LOCUS       KCOD01000057             596 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 6437pyr ultra-conserved element locus
            uce-7583, sequence.
ACCESSION   KCOD01000057
VERSION     KCOD01000057.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 596)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 596)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..596
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6437pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>596
                     /note="ultra-conserved element locus uce-7583"
BASE COUNT          165 a          135 c          100 g          196 t
ORIGIN      
        1 ggcaaaccta ccacagaatt tgagctctcc ccaccacctg cagcagggtg aacttctgtg
       61 ttcccatcaa tttccaatat ctatttccca ggagcctagc tacaataatc aggtcccact
      121 gggatcacat ttatgttggt atgcatttac tcagcctctt actatcacac atacaattaa
      181 gttcagcttc ttaaatgtaa ttggagccag ctgcaacctt tctgacacat actaattgcc
      241 agtaatgatt taagtgcagt caattcgcat gctgcaattg ttttaaataa aggaatctct
      301 cgtacctttt ccctgagaaa aatctgttaa tctttgctgc tgacttatca aatcctccag
      361 tcacctgttt gccatcattt tcatgagctg ataacgtgtt tattagagcc ataatacgca
      421 ggtggaagca taaaggtctc atttggtgga gtatgaattc tgtctcatac agctgtatgg
      481 aaaagcttgg tttcaccctt ctgctgtgcc tcagaagttc caaaatagta tcttttattc
      541 ttttcaaatg gaatattagt tcttttaagc tcgcatctca aaataccatt tagatg
//
LOCUS       KCOD01000058             587 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 6541pyr ultra-conserved element locus
            uce-7878, sequence.
ACCESSION   KCOD01000058
VERSION     KCOD01000058.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 587)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 587)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..587
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6541pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>587
                     /note="ultra-conserved element locus uce-7878"
BASE COUNT          180 a           80 c          113 g          214 t
ORIGIN      
        1 gctccatgat tattccttgc ccattatgat gacccacatg ttgatttaag agtggataat
       61 tatattcatc tttggaaata aagtgctctg tgacagcatg agtaatagtt ttcagtcgga
      121 agaggacgtt gaaggatcat tgtgatggaa aataatatgg tatatatagt aaaggtgatg
      181 gagtgtttgt cagagttatc agtcaaaaga ttgtcttaaa gtaagacttg ttttaccatt
      241 gttgatgctg aaaggagaac tagacttaaa agtttgtaga tactcataag acatgagttc
      301 cttaacaaga ttttccagac catttgacat atttatacta ctgtctattt ttgccaattg
      361 tgtggcctta gctgtttaca tcccattccc agaagatgat tctaattcaa ctaatcataa
      421 tttggtaagt actctatttg tttgctatga tttgtgactt cactaaatat aggtaatttc
      481 agacatgtgg aattgccagt agtaagtgtt atcagtaaaa ctttggagag aaatgtgtgt
      541 taatattatg ctttctattg cttatattga ttacatctat ttactag
//
LOCUS       KCOD01000059             476 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 6647pyr ultra-conserved element locus
            uce-849, sequence.
ACCESSION   KCOD01000059
VERSION     KCOD01000059.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 476)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 476)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..476
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6647pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>476
                     /note="ultra-conserved element locus uce-849"
BASE COUNT          147 a           89 c          100 g          140 t
ORIGIN      
        1 aaaaattaga aaattcaaat gtctctcacg aacaccacca ccatgttctg tccagaagaa
       61 aaatccctca gccgcaatgg ttgtttttat taaattctcc tcaataaaaa gctcaggcag
      121 gatttattag gtactcaggg cggacgttta gtatttcgcc agttattaag tgaaaatcaa
      181 tagaaagcaa agaaaatgga agtcactgca ctgttagcac gctgttgtcg cccagatatt
      241 atgtcggctg tcttgtagat tcatgacaga cgaaagcggc cgggagagaa ctctttctgc
      301 ttacattgca ggagccaaag tggggttatt cattagatca ggcagctggc cagatggatt
      361 tccagttcag ttttaccatt tatcttaaaa acgcctgtat cgagtgagaa agaacactga
      421 tattatgtga tatcgatggc agctttatgt atctaaatca ggatttattg ttattt
//
LOCUS       KCOD01000060             505 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 6761pyr ultra-conserved element locus
            uce-3929, sequence.
ACCESSION   KCOD01000060
VERSION     KCOD01000060.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 505)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 505)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6761pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>505
                     /note="ultra-conserved element locus uce-3929"
BASE COUNT          147 a           98 c          103 g          157 t
ORIGIN      
        1 cttctgacat ggacccagct tttattgctt gggtttatta gcgccaaatc ccaggctcca
       61 cccagtttgt aggcgctgtg ctcattcttt ggaatcaaga gaggttatca cctaccttaa
      121 tccatgcagc agggtggatt aaggacacca atgtgcctca ggattctcaa agaggatcct
      181 ggaaacttct tgtttcttct tttttgctgt ctttactaaa ctctattggg cctcagtaag
      241 gatttgcatc tgaaatgggc aacctggagc ttttctcaat gaagacatca gatcaaagtt
      301 cagttagtca aggcctttct aaaacattaa gggggcttgg aagtacacaa taaaaagatg
      361 agctctggca gagattgcag taaaaacatt ctgatctgta atccggataa agaatagatt
      421 ataggccaaa gaacagcccc tgtttaaatt gctttcaaaa tccttgtttt gaataaagtt
      481 acattttaaa ttttgataga atgtt
//
LOCUS       KCOD01000061             750 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 6873pyr ultra-conserved element locus
            uce-6242, sequence.
ACCESSION   KCOD01000061
VERSION     KCOD01000061.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 750)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 750)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..750
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6873pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>750
                     /note="ultra-conserved element locus uce-6242"
BASE COUNT          184 a          186 c          233 g          147 t
ORIGIN      
        1 tctttctgtc tatgtgaaac tgagagaggc gtagtttgat cagcctcggt gatatgctgc
       61 tgtctgacac cctcatctcc atgcagggac aagttagctt caggttcaca gaaggggaga
      121 gtaattatag accgttggga ccagccacag tccacagatg ctgcggcagg cagctgcctt
      181 gcctgggctg ccctcgcgtg tgggccagag caagtggctc gccgtgactg ctgtgtgaag
      241 cgagggtttc tgcttttcct taattctggc ctctctttat ctttgctgtt ttcagttcaa
      301 gatggctttc ccatgcccag gcgcttttct aaacccgaat accaacaatt ctttttaggg
      361 atgcacaaaa agtctctgga ggcagcggct gaggcgggga ggaagacaga ggtggagcgc
      421 caggccctgc ccaagcttga caaaggtgac aaggaagaaa ggggtccgga tcccaaaacc
      481 accatttccc aggaggaact gagagaaaac agcattgctg ccctcagggc caaagctcag
      541 gagcacagca ccaaagtcct ggggaccatt gccggggaca ccccagcccc aggcaggaag
      601 ctggagacag aggaggaggc ggcagtggca gaggatgaga gacagacgga gaagctgaac
      661 tcgtcgcaga aggaggagaa gctgatctag ggggaagaga ggtggcagaa gccagccctg
      721 acagacactg tgtcctctgg gggccacgtt
//
LOCUS       KCOD01000062             716 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 6981pyr ultra-conserved element locus
            uce-6363, sequence.
ACCESSION   KCOD01000062
VERSION     KCOD01000062.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 716)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6981pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>716
                     /note="ultra-conserved element locus uce-6363"
BASE COUNT          187 a          156 c          145 g          228 t
ORIGIN      
        1 ggaaagtgtg cagggaattt ggtactcccc catgccgaga ggttaatgtg ctgaaataaa
       61 cagagtatga aaatacaact ttctacacca gctgtcaaat tcagctatct tgaattgttt
      121 tgggctggtc tttgcatttt gatgctaatt aagattaaat atctctcact actgaatttt
      181 gtagatcaag ttgaagtact tccctaatgt catgtaattt tctggcatta atacacttta
      241 tcattgtcat aagtataaat ggctcattaa aaccaggagg gaatacaata cttttatgga
      301 tttctgctct catgttaatg ctgttttctt tcctcatgag taatctcttg atggcttctg
      361 tctccacaga acagagacaa ctacatccgt tcctgcagat tgctccctga cggccgcacc
      421 ctgattgttg gtggggaagc cagcacgtta tccatttggg acctggcagc tccaactcct
      481 cgcatcaaag cagagctgac atcttctgct ccagcttgct atgccctagc tatcagccct
      541 gattccaagg tctgcttctc ttgctgtagc gatggcaaca ttgcagtgtg ggatctgcat
      601 aaccagactt tagtaaggta ggtcgaccac actggatcat caggttgtga agaattatag
      661 tctattttct ctagatgctt ccagtatttt atagccatgg taataccttg acagaa
//
LOCUS       KCOD01000063             682 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 7094pyr ultra-conserved element locus
            uce-978, sequence.
ACCESSION   KCOD01000063
VERSION     KCOD01000063.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 682)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 682)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..682
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7094pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>682
                     /note="ultra-conserved element locus uce-978"
BASE COUNT          185 a          116 c          159 g          222 t
ORIGIN      
        1 tgccaagcct gtgttaaggc ttgtcagtct ttaataaatc ttgaagattt aagatgctgc
       61 tccttgctgg tgcccatcac tccccagtgc aaggcagggc agagccaggg ctgcagggac
      121 gtgtgagaaa agagctcctg gaaaggtcat tggtattttt ggagcaataa atcatgggaa
      181 agatttgcat tttggctgta taaaatccag ggctggattt ttgcagtaat atttctctcc
      241 tgacttgttt tattagcttc ctttaaacat gttacattat tgcttataga atttcattta
      301 cttggattgg cagcttgata aatatgtcta ttggcgatga tttggattgc tctgggcatt
      361 aatattatta aaacctgtca caaggaaatg tctgaaagat gacttactgt aaagattaca
      421 gcatgaaata aatcatacaa tggtatttgt taccgtttat ggcctcttgg agccgagtca
      481 atcccttttt atgttgcatt atttttcaag tttttatagc cttacattat atatcgctgt
      541 cagaaatgaa cagatggggt gtcaaacacg agccttctga ataattccca ccctcgggtt
      601 atttgtatga aggacaagtg taaagctgtg ttctcgagaa aaggagcggg atggaggtgc
      661 aggaagtgtt gttccagcgg gc
//
LOCUS       KCOD01000064             838 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 7203pyr ultra-conserved element locus
            uce-4679, sequence.
ACCESSION   KCOD01000064
VERSION     KCOD01000064.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 838)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 838)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..838
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7203pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>838
                     /note="ultra-conserved element locus uce-4679"
BASE COUNT          253 a          174 c          145 g          266 t
ORIGIN      
        1 catttaaaag gagccacaaa tatttatgag gcaattttaa cacttaccaa ttgcttttgt
       61 ggggcttgat actttaatag ctgtagttgt atcagccttg gctgatattt cctaattatt
      121 catatcctga cgtgttatca gccatcatag agcgttacca gcatcatttt aagctctctt
      181 caccttcttc agtctgggtt ttatttgaaa agcagacatg cagtccccag tgagaattaa
      241 agtagaagca ttagcttgca aaatatatgc caatgaccta atgattctga catttccaca
      301 atacaagctt tacaagaagg catgcagaca gcaaagtctg tttttctatc tcatattttt
      361 ttaatggcta aatgtttgga ggaaacaaaa tggatttatt ctgctcaatc cagggtataa
      421 tatcaggact tatccggttc cgggccccag ggcttcagac aactaacaaa acacatctta
      481 cttctgctct gctagttctc tgttatgctt ttcacatgca ggaagaatga gtaaaagcat
      541 aacccaattg aataaagcag catggcctgc tattctttgc ttatgaagca tcacatgata
      601 gacaccaaat taagaagaac cccccacctg tggttaagta tgtgtgcaac tgtcaagccg
      661 ttttatttaa tagggaattt taccattccc tgcactgcca gagtacaaga atatgttaaa
      721 atgttaatgc caagcatgct tcaatagtcc agtgatttta catcatttaa atccctgatc
      781 tatttcgaaa tgcttccacc tttcaaatcc tttgctctgt ggaaagacga ctaatctg
//
LOCUS       KCOD01000065             596 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 7314pyr ultra-conserved element locus
            uce-6842, sequence.
ACCESSION   KCOD01000065
VERSION     KCOD01000065.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 596)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 596)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..596
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7314pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>596
                     /note="ultra-conserved element locus uce-6842"
BASE COUNT          175 a          105 c          104 g          212 t
ORIGIN      
        1 tcagaaagac ttttatttca ggcaacaaat gtaatctatt tcccaccatg tatttatata
       61 catttagatc tatctatcct gctagctata tctaaccaca ataaaacagt tgagcactct
      121 caagtgttat gcctttaagt taaagtttat tgaaataaaa taaggaaaga acaatacatt
      181 ttgcattctt cagaagccag tattcaataa atactaagtt ttgatcgatt gatacagtgt
      241 catatttgac taaagaggtg ggaaagttgc tactgttgct ttgtgctggc tagaagaaga
      301 atgcactatt gattttatat gttggatggg ctgtcagcgt acagtgcatt gttgattttg
      361 acttttatag ccaacatgtt tcctttaatt ggatcatttg taaaagagag gagggtacct
      421 gttcgcttct gacagtgact gattacaatc atttcatgtt tgtcaatatt tgataaaccc
      481 acggttaccc aacaacatgg ctgaaagcag catctttatg catttgcttg tttcccttct
      541 ttcctgtttc tgatttcagt ctcagtgaag ttgtaccagc aactccttct tcatat
//
LOCUS       KCOD01000066             648 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 7425pyr ultra-conserved element locus
            uce-4963, sequence.
ACCESSION   KCOD01000066
VERSION     KCOD01000066.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 648)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7425pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>648
                     /note="ultra-conserved element locus uce-4963"
BASE COUNT          217 a          112 c          121 g          198 t
ORIGIN      
        1 cagtatgtga tgctgtgaac acacgttatg tactgcctct tctttaagga ggatacttag
       61 gtgaagagga agtttttcag atctaacctt tgttatttta cctgctctca ccaggtaatt
      121 tccagttatt cacaagtttc cctttagcct taataaggaa atctttgagt caggttagtg
      181 cagaagatta agactgtatt aagtctgaaa tgttctgcta ccaattagcc ctctagtatt
      241 tctgtaagcc ttgaattttt gatgcgatca atgacaccaa gtggagccat cttctgtgga
      301 gtggttatta aagatataaa aatcaataca aagatgatac ttggaaatct atatcacaag
      361 ataatgaatc accatgagag ccagctaaga aggaatgtca gcaaaccaaa cagaaggttt
      421 gtgcataaca aattatttga tgccagtaga gtttaagcta aattttgcat gagacagaag
      481 tcttcaggca acacttacaa tacatttgca tggcaaggtt ttaatgagat gaagacacaa
      541 gaccaaccat gcacagggct ttttgtgcat taagggatta agacaataat gctataattt
      601 gactttaatg acaaaacagc atcaaaaact ttctctaatc cttattca
//
LOCUS       KCOD01000067             538 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 7534pyr ultra-conserved element locus
            uce-2651, sequence.
ACCESSION   KCOD01000067
VERSION     KCOD01000067.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 538)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 538)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..538
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7534pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>538
                     /note="ultra-conserved element locus uce-2651"
BASE COUNT          150 a          126 c          134 g          128 t
ORIGIN      
        1 gtcatgaaac attgatctag gtggaaaatg aaccaaccca caaaagtcac taaaaataaa
       61 cgtctatcaa aactgtctga gagatggtta gtttgctttt ttgccatggt aacatattat
      121 gtttcaagta ccagttcaaa gatgtcatgt ttggtcagat aaagttgtta catcattcac
      181 cacatacgac aacaaaaatg cttgccccta gcacatttca cagcttcaac tgctacagac
      241 tgtcactgaa aaaaatgcgg tcagtctgaa ccatgtcaag taaactacag aagtagcata
      301 caaactgtgc tagctctaac cccaaaacca ggtacaaccc ccactcggcc ctgtggcagg
      361 ggatgggtcg tggcggtcgg acaggtggga ggtgtggttg tacagtacat tctaagccgg
      421 gctcctggca cgcaggccgg tcctgcagca ttagcgagag cgcagctcag taccggtggg
      481 tctggtgcga gtactgcggc ggctgctggg aggtagctga gtatcccatg ctgctctg
//
LOCUS       KCOD01000068             555 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 7647pyr ultra-conserved element locus
            uce-185, sequence.
ACCESSION   KCOD01000068
VERSION     KCOD01000068.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 555)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 555)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..555
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7647pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>555
                     /note="ultra-conserved element locus uce-185"
BASE COUNT          177 a           79 c          138 g          161 t
ORIGIN      
        1 agcagaggca atttccccat tgccttaact ctttggcact acatttttga agctctctct
       61 gactgtggat gtcttgctgg gcaaatacag ttcctgaaat gaaaggatta agtatataaa
      121 gggagaggaa aggaaggggt gtagaagggg tagagatgag aaaagagagg cttaaataga
      181 actgtataca ctaggtagta tagccagcaa aattgaagtc atttactgga acgcttttaa
      241 tttggtttaa acaaaatact cttttgtata ttcaaaagta gctcagctgt tgtgaagcca
      301 gaaaattaat ggtattttta gtgaaagagc aaatgcatgt caacaacata gctctggatg
      361 ataatgttgg cattttattc atgaggaatt acagtgcagg ttactggaca acatagtgtg
      421 actggaatga ttgagcacag gggggaagcg gctgtccttc tgtaagatga tttcgtttta
      481 catttagtcc ttcaggaaga gagaaaggag acagaaagaa atacatgtct atgcctatcc
      541 ttgtggtttc tgggt
//
LOCUS       KCOD01000069             530 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 7754pyr ultra-conserved element locus
            uce-3349, sequence.
ACCESSION   KCOD01000069
VERSION     KCOD01000069.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 530)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 530)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7754pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>530
                     /note="ultra-conserved element locus uce-3349"
BASE COUNT          180 a           74 c          140 g          136 t
ORIGIN      
        1 gccttgggaa acaaaaggtt ttaatggctg gtgcttggta tccttgacaa caatccccaa
       61 agaatattac attagggcac cagagaactt ttaaaaataa gtaatggaat tccgtctctg
      121 ttatgctttt agtagtcatt tcggccatgg tgcagcgagg tcataagctg agctcagtga
      181 agggagccag aacacgaaat gatgctggtc tgggagatga gaggtacaga attacaagcg
      241 aaagtgcagg cctgctgagg caattacagc ttaatggggt catttggaag gcaattgcca
      301 ggggttaatg tagtatggag agatgaggtg agattgaagt gaaatttggg gctggaaatg
      361 tgttaagatg aaagatcaga gtgcagcaga ttctgcagtg cagaaggttt atatcatgca
      421 aaaaatttga gaaaaatgta aaagtagtag ccagatgttt caaaataaat aaataaatta
      481 agtaaatgct ttaaaaagtg aaattgctgc atcaaaacac cctgtgctgg
//
LOCUS       KCOD01000070             693 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 7861pyr ultra-conserved element locus
            uce-6448, sequence.
ACCESSION   KCOD01000070
VERSION     KCOD01000070.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 693)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 693)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..693
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7861pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>693
                     /note="ultra-conserved element locus uce-6448"
BASE COUNT          203 a          105 c          154 g          231 t
ORIGIN      
        1 tattattcca cattaggaat gtggaaataa tagaattctt gtagcgctta tactgtgtgg
       61 caatgctcac ttacgaacag caatttgtag ggaaagtacc tggacatgtt gggctggaat
      121 ttgtgggaga aggggtgttg gagtgtggat aatcagtgat ctggtgtatt tggtgacagt
      181 ttaatgatga tttggtgctg cttgtgcata atccctcccc cacccatgac aaaccttttc
      241 ccagttgggg ctggaggaaa tgagtaatgc ttaacccatt tgtgtgatca attcacttaa
      301 gcagctactg tgaaatgtta atcacaactt taatttgtac tgcattagca ttttgattaa
      361 cttgtaggct tgctagcaca cttgaagcac ttttactcat agttacagct cggaaatgac
      421 tttttgatta attaagtttg ttagacagca gctgagcttc ctgaatgcta accttaaggg
      481 gctaaaagtt caaaagttac tgggaataac tgttgctgtt gaaaaggatt cttgtgaaca
      541 aaatatgact ttcctctttg aaactgactc taaactgtaa agaggacaga tttattatga
      601 caaagatttt tggtagattt gtttaacatt tgaaacaaat gctggcttta agaaattgtt
      661 tctgttagga aattgggatt tattgcaaag aca
//
LOCUS       KCOD01000071             547 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 7970pyr ultra-conserved element locus
            uce-4786, sequence.
ACCESSION   KCOD01000071
VERSION     KCOD01000071.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 547)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 547)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..547
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7970pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>547
                     /note="ultra-conserved element locus uce-4786"
BASE COUNT          131 a          121 c          129 g          166 t
ORIGIN      
        1 atttaatgga gaggaatgca gccacggttt aagattctgt tttccacagg ctttttccac
       61 gctgtatttg ctgtgtgatg tgaccactag agagcaggct taacctagta acaagagcta
      121 attagttttt catttgcagc ccccaacccc cttccacctt tctgtctagg cagaggcgac
      181 ttccatggtt cttagctttg cctcctgtgc aatcttaggg ctaattaaaa cgccacagac
      241 ggcctgaacc ccacattaaa gtttgatgag gaattgatca gccaagcaaa caggaaattt
      301 agctgtgtga gtgaaggtaa tgtttgctca aatgtgtaat gaggtccatg gggaatattt
      361 atggggacct tagtgatggt ttcagcagtt ccttctcctt gaagttctct gacctacctg
      421 ccctctcctt cataggagtg taggcgcaag gaaacccctc gctgcatcag tgagcatgtt
      481 ttgcaaagtt tggctaaggt ggtctcatgt aaatctttgg ctgtgggact gcatttgcag
      541 ttttacc
//
LOCUS       KCOD01000072             457 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 8075pyr ultra-conserved element locus
            uce-7531, sequence.
ACCESSION   KCOD01000072
VERSION     KCOD01000072.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 457)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 457)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8075pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>457
                     /note="ultra-conserved element locus uce-7531"
BASE COUNT          129 a           94 c           87 g          147 t
ORIGIN      
        1 aaatgtgctt tgaaaaaaca agaaaatgtg cccatgaaaa acaccggcat tcaaagctga
       61 atattgagca tacagttgta aactcacacg gcacatggct gggtaggttt ttttggcaga
      121 gccagagtct caacctgcag tgatgctaaa gatattagca aattagcact gcaaagcttg
      181 ccagcgtatt cgctagagtc ctgctcatgc tctcactgct gtaattaaaa ctaattattt
      241 tctaaaacat agtaatacat gaatatgtgc aataatcatt ttgtagtggg caatctgtga
      301 agtattttta aagcttcttt tccccctcct atctttggct cgctgtgcag tgtgcctgct
      361 gcctggtgca agccagcact gtcattttgc gagagccaca ctactcagat aactttgctg
      421 attcttacat ttgcaatata tttttttatt gtctttt
//
LOCUS       KCOD01000073             592 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 8183pyr ultra-conserved element locus
            uce-6791, sequence.
ACCESSION   KCOD01000073
VERSION     KCOD01000073.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 592)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 592)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..592
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8183pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>592
                     /note="ultra-conserved element locus uce-6791"
BASE COUNT          174 a          132 c          128 g          158 t
ORIGIN      
        1 tatatacaca aacacacata tgtatgccac atacgttggt atttttcctt tttttggtgg
       61 aagccagcgg aatgatgaca atctggatca ccgtgtttcg cttccaaacc aaagctctca
      121 gttaacacac cggcctggta cgccagcaga tgccgtctaa gcctttaaat cgcacactaa
      181 ttgcactaat tgagctaaca gtctctgttt cgtctcccta ccctgagtca accagcatct
      241 tctggtactg ctgtagagat ccaagctgtt gactgtagtg ttattttgtc agccattaaa
      301 cgattcatca gagtcattaa ttgatttatt accgctgccc gcgagtatag ctttgcaaat
      361 aaagaaggat ggaggtcagg aggcaataga aatcggacaa aacagcacag ccaggagctg
      421 ggcacttgaa ttatcgatag gagcccgctt gcgcagccgg catcaggtta taaaaaagga
      481 aaagatatgc tgcaaagctg gttaatctat gcaggatgta aaaccagctt gttttcttaa
      541 cctaatcctt caggagaaac caggttagta ttaactgtgc tgaagagcag ca
//
LOCUS       KCOD01000074             626 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 8294pyr ultra-conserved element locus
            uce-3630, sequence.
ACCESSION   KCOD01000074
VERSION     KCOD01000074.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 626)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 626)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..626
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8294pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>626
                     /note="ultra-conserved element locus uce-3630"
BASE COUNT          187 a          121 c          144 g          174 t
ORIGIN      
        1 tcagtgttgc tggagctaaa tagaaggaat attctgggag actgttttgc tagactcgtc
       61 tcctcagctc ctcacctcag ctccaggcag aggctgcaca tctggtttta gcagagaagg
      121 gacatgctgc actagcttgc tgctgaagga aggtctgtgt ctgcactgcc atgtctgtac
      181 tgtgtgcttg ctgttgaact ggatatcatg gaaagacttt tcttcccatg ttctttaact
      241 gtagtcacat gtggccaagc taaacccccg cagtgcaact gttttttcct atttacacgt
      301 gttactaaga aacatcagct aaggatatgt tattacaagt ttgtgaatga ccccattctt
      361 ggcacagggc caagccaaac attttagttc atttggaaaa gcaaaatgtg atagagtcat
      421 tatgattgac aagcagaggt ggagtgctac tatgaaacag agagacggga aattccaata
      481 atcgaaatta ataagcatag tcattaattc catcagtggg attaaaaaac agaaatgtca
      541 ttctgtctta agagcagttt agccaggaaa gagcacagga gacaaactgt aaggcacctt
      601 ggtatgataa gatgttaaca ctgaga
//
LOCUS       KCOD01000075             758 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 8399pyr ultra-conserved element locus
            uce-6007, sequence.
ACCESSION   KCOD01000075
VERSION     KCOD01000075.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 758)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 758)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..758
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8399pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>758
                     /note="ultra-conserved element locus uce-6007"
BASE COUNT          235 a          133 c          145 g          245 t
ORIGIN      
        1 atgatcagag aagcagacat tgatggggat gggcaagtca actatgaagg ttttacttaa
       61 caccgttatt cagaaaagcc tgttgcatag ggcattaatt ttcttgagac actagtttat
      121 ttgcttgtct acttcaagcc gactgtgtac tctggagaca gtaaatcaca gtgacttttt
      181 atcttttcag aattcgtaca gatgatgact gcaaagtgaa gagacctcct ttacaccttt
      241 tttcctctag aagaatcaaa ttgaatcttt tacttacctc ttgcaatgtt catttattca
      301 ttctgtttct gtatagcaaa actgaatgtc aaattacctt ctgtccacaa actgcatgta
      361 atggttggtg gtcctgtccc caaaagataa acatcagttt tacaatataa ataattgtac
      421 taccttgaaa ataaaaaaaa ggaagcactt agtgaactcg aaagttccat ttgctaatga
      481 ctattacact gtttgggctg gccagttttt catgcatgca gcttgacaat tgagcacagt
      541 cagacatgtg tattaaaagg aacctaaagg atccactctt ttgttcaaca gtggattcta
      601 gttcaatttg tagtataaat tgtcatagct ggtttacttt aaaattggtt tatacctcag
      661 gatggtatgc agcaaaatgg ttgaaggatg taaaacaaaa tgccctaaag gttgagtggt
      721 tctcctgtac gtagcagtgt gctccaaaaa taggatga
//
LOCUS       KCOD01000076             437 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 8498pyr ultra-conserved element locus
            uce-2491, sequence.
ACCESSION   KCOD01000076
VERSION     KCOD01000076.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 437)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 437)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..437
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8498pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>437
                     /note="ultra-conserved element locus uce-2491"
BASE COUNT          111 a          111 c          117 g           98 t
ORIGIN      
        1 attgccagca gagctgctgg tggtgctgta cccccttagc accatttaaa tgtccaattg
       61 cactcattca gcccctgctg ctcctccagc ccgtgacagc tttgacagcc agactcctta
      121 attccttttt cttattccct taatctgtca tctttatcag gctggggaag tgccaggcag
      181 caagcaggag ccccggcccc gatcaatctc cacattacag ctgacagaat ggtgctaata
      241 acttattgat ctcatgtttg ccaagcccca gtggggctga aaggctccca ttgattggct
      301 tgagggaagg agcctctcag ctgagagccg agcggaaaac cttcaaattg tcttcttccc
      361 caggagctgg gagagggagg gagaagggag ggcagggacc aggacaatgg aaaggaagaa
      421 ggagaatgga aaaggaa
//
LOCUS       KCOD01000077             711 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 8604pyr ultra-conserved element locus
            uce-760, sequence.
ACCESSION   KCOD01000077
VERSION     KCOD01000077.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 711)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 711)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..711
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8604pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>711
                     /note="ultra-conserved element locus uce-760"
BASE COUNT          235 a          107 c          106 g          263 t
ORIGIN      
        1 aaatcaaaac cttaatatgt ataattaaat taatcatcat aaattacatt ttagcacaga
       61 gagttagatt tataatatca ttttcaaatc tctatgtgag gtttaaatat tttatagcat
      121 atgtgagtta gagggaaatg tgtctaatgg cttaaatatc actgtacagc agtagacttt
      181 gacaaaaact gtagcacaac tgtttctaag gtagtttgta aaaattattt atttccatac
      241 cagttaatta tgatgggagt ctttgttgaa tgcacaagca ttaaaaaagt gctgatattt
      301 tatgcatctt taactgtaac gtgcttccct gcagcgcatt ggtaactcct tgacatttaa
      361 cattcactca cagcaactat aataaggggt ttgattgctt cttttgcaga tgcagtaatt
      421 taataactgt gatcagttgc ataaatttac tatacaacca tcttaagtta gccacattaa
      481 aattaagcaa aattgtaatc tgttgacaga ttattgctcc tgaacaattc tactaaaagc
      541 atttcagatt agcttgtgcc acaagcattt ttgttttata agcttgtaaa aaatactgct
      601 gcttttttgc ttccaatctt actattagac aattacatga aattttatgt tttctgttaa
      661 atcacctgaa ctgggatgat ttagttattt ataccgcatt atgttttgaa t
//
LOCUS       KCOD01000078             518 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 8713pyr ultra-conserved element locus
            uce-6947, sequence.
ACCESSION   KCOD01000078
VERSION     KCOD01000078.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 518)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 518)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..518
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8713pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>518
                     /note="ultra-conserved element locus uce-6947"
BASE COUNT          197 a           74 c          102 g          145 t
ORIGIN      
        1 ctgtataaac aagtataaat gtttaaaaag taaagaatac taatcaagag atggaagaca
       61 cgcgctgctt aataaatctt gccttcaatt tatttgtcta gtattacaaa ggcagaggag
      121 atatcaatta atataggcaa agaggaccca taatttataa ttaactggca agtggtttgt
      181 aacaaacagc agcactgaat ctaatagcca gtagaaaaat aactggtgtt gatttgtccc
      241 tcggcaaatt aatagagtgc ttatcaatga cagggttaca taaaactgct aaataaataa
      301 tcatcagtga gttagagtga agcagatctt taacaagctt aatctgaacc tcttgacatc
      361 tgcagactat gaagagatta aatgctaaga aagagaaggt gcagtatgca catcataagc
      421 atgctcagga gctgggcgag atcgtgttct tgggtaatgg gaaacaagga aacattttta
      481 ttgcaaaatt acagtgaaaa attattttca ttataatt
//
LOCUS       KCOD01000079             733 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 8819pyr ultra-conserved element locus
            uce-3530, sequence.
ACCESSION   KCOD01000079
VERSION     KCOD01000079.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 733)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 733)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..733
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8819pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>733
                     /note="ultra-conserved element locus uce-3530"
BASE COUNT          205 a          151 c          165 g          212 t
ORIGIN      
        1 aataccacaa ctttaaatct atttttcttt cgttttttct tgatactgtt ggcatatttt
       61 aaacctatct tagtagctaa aaatgaggat aatgttcttt gagaaggtct cttgtatccg
      121 acagttgttc acgttgtgag gaatagtgga agttaaaccc ttaaaattgt attacagccc
      181 tgagcatttt tcttgcagag taacagctat ccaccaatgt cagacccata tatgcctagc
      241 tattatgctc catccattgg atttccatac tctttaggtg aagcagcatg gtcaactgca
      301 ggtgaccctc caatgccata tttgacaact tatggacaga tgagcaatgg tgaacaccat
      361 tacatacctg atggtgtatt tagtcaacct ggggcattag gaaacacccc tccgtttctc
      421 gggcagcatg gatttaattt ttttcctggg aatgcagact tctctacatg ggggacaagt
      481 ggatctcagg gacaatcaac gcaaagctct gcttacagca gcagctatgg ctatccacct
      541 agttctcttg ggagagccat agcagatgga caggctggat ttggcagtga tactctgagc
      601 aaggtgcctg ggattagcag cattgagcaa ggcatgactg gactgaaaat tggtggagat
      661 atgacggctg ctgtaacaaa aactgtaggt tcagctctga gcagtacagg tatgacaagc
      721 atagcagcta aca
//
LOCUS       KCOD01000080             443 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 8928pyr ultra-conserved element locus
            uce-6641, sequence.
ACCESSION   KCOD01000080
VERSION     KCOD01000080.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 443)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 443)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..443
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8928pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>443
                     /note="ultra-conserved element locus uce-6641"
BASE COUNT          110 a          111 c           93 g          129 t
ORIGIN      
        1 tgcttatttc attgtctcct tattatgatc tgaaactcgt tttcgctccc tgcccgtgcc
       61 cctgccacgc agcaacattc cctgcataca aaggaggatt ccagggaagg gggaaccacc
      121 cagcccggga agctgcgata cagccacaga cctgtgtaaa gctccattta cccaagattc
      181 ccaaagcttt tagtttagga gaatatttaa tactcttatt aatcattttt aatccgtttg
      241 cttttaatta agaaacagca tgatgcttcc ctatcaacat atgccaggga gcagattaat
      301 tgtggcttaa gataactctc cttgattggt gtaatgtatt agctaacgag ctgcctgctt
      361 ttggagagct caggctctac cttggaaagg ctgctgccct cccccccctt ccctggggtg
      421 ctggggactt taaaaatgga atg
//
LOCUS       KCOD01000081             721 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 9035pyr ultra-conserved element locus
            uce-6532, sequence.
ACCESSION   KCOD01000081
VERSION     KCOD01000081.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 721)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 721)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..721
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9035pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>721
                     /note="ultra-conserved element locus uce-6532"
BASE COUNT          227 a          105 c          138 g          251 t
ORIGIN      
        1 aattctataa atttcattat ggaacattta taagatgatt tccatgacga ccatataata
       61 agattcatgt ttactttaat tctgagttct caatgtcttt ttaatgactc ccatgtaatt
      121 agaacagaat gcataatttg aggtaacgta atatgaatca gttttgtttg cgtgatgttg
      181 aatactgtta atacatgtac aatgaactgt ttaagaccta tacatggcta tgtccatttg
      241 ttgcagaact gtgagaaact ggaaaataat tttgatgaca tcaagcacac tactcttagt
      301 gagcgaggag cacttcgaga agcaatgagg taagtctggg tcaccatagc aacagtcaca
      361 gatgtggtaa agaaagagtc attcttcatt attgggggaa caaatgagtt cattgccacc
      421 attcagctct attctctaag gtattaattt gtcagtggag aggcttccct tgaggctgta
      481 ctttggtttt gaagctgcat aaatgttaag cctgactgca cagtaaaaaa tgtaaatgtt
      541 taatttgtta tttaaaatgc ttagggggtg ccttgcttta tatttatact aaactgtgag
      601 tgaatgaaaa tattgttcat ctaaattctg taagtgttaa agcaattgta caatggtgtt
      661 tgaacaaacc tgtatttgct ttaaattgaa tttgacttta tgtagttcca tcaccagatt
      721 t
//
LOCUS       KCOD01000082             650 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 9145pyr ultra-conserved element locus
            uce-7117, sequence.
ACCESSION   KCOD01000082
VERSION     KCOD01000082.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 650)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 650)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9145pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>650
                     /note="ultra-conserved element locus uce-7117"
BASE COUNT          185 a          143 c          117 g          205 t
ORIGIN      
        1 catttaatcc tcgtttaggt ttaattaaga attcctcagt tacaactctc tagttgtcaa
       61 ggtctgagag actcttggaa aagttgtgtt tcagtcttgc tggcccaagc ataataaaaa
      121 aaaataccca gcctgaatcg aatttttatg ctcagttcac ggtagatttc actccattct
      181 catgtaaaca gcttctacga atcaacatat gtgtctgggt ggtatctctc actttgtttt
      241 gtaacaaaaa gccatattgc atcatttaat ttgctcaagt catgcaaata ggaaaaaatc
      301 aataggacaa aaaggggtcg acttatcctc ctccccacta aactgctgcc cacacacaga
      361 gtcctgttgc ttatggcaaa agaataacaa caacaccatt gtgtttgtta gttggttcac
      421 taatgggtga aactggagaa catcattctc cttcagtccc cagctctgtc caaatgttca
      481 tgccttttga gggagcattt gtcctacccc ctctattccc agatgagtga gaactgtctt
      541 actgcaggtt ttcagctgca gatctctctt tattcatacc atatgcagca gcagtttgag
      601 attcaaggca gatatatttc ttcatgttgt ctagagacag tgtcattaag
//
LOCUS       KCOD01000083             524 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 9252pyr ultra-conserved element locus
            uce-2788, sequence.
ACCESSION   KCOD01000083
VERSION     KCOD01000083.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 524)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 524)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..524
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9252pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>524
                     /note="ultra-conserved element locus uce-2788"
BASE COUNT          184 a           81 c          106 g          153 t
ORIGIN      
        1 ttaattggat tgcttgcata aattgcaata caaggtggac atgtgatagc tttctttttc
       61 accaatcagt catgtcaaga gaatcttatg tattttatat agaaagtaga aaaaatgata
      121 atttgaaaag atgagaagat ggtgctgggt aaaagctgat attctttctt tataacagat
      181 agccccaagt tgtagaggcc attatttctt gcattttcag agcaaatgaa cttgacagat
      241 ggctgtgtca cctaaacccc tacctaccaa cttgattatg cagaaaacaa tacaatagaa
      301 aagaaatcat tactgaagga acctggttag tccacagagg gctgagcggt gcagaagaac
      361 aaaattacag ttgtggaatt gaacagcaag aatacattta acataaagtg ggttacagca
      421 aggcaatcag tcatggctaa agctattgtc taggcttgct tgcatggtat atgaagtaat
      481 ctgtcatcta ccactgaatt tatgcttagt ttatagtaga aaaa
//
LOCUS       KCOD01000084             689 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 9361pyr ultra-conserved element locus
            uce-6101, sequence.
ACCESSION   KCOD01000084
VERSION     KCOD01000084.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 689)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 689)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..689
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9361pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>689
                     /note="ultra-conserved element locus uce-6101"
BASE COUNT          225 a          142 c          125 g          197 t
ORIGIN      
        1 aaaggaagat agtgtcagtt tgtatccctg cttcttcaaa attcattgct cttaaacacc
       61 atgcagcttc tcttcaggag acctgaacct actcctttac agcaagtgta tcattaataa
      121 gagcaagtta gaagtgcttt gcatttcatc tttctgaaga ttcatccact ggtgcatata
      181 taactgacag ttagaattag acatatatta aaatcagtta ctgaagaagt cctctgtctt
      241 ccactgtgcc caaagcttgt aatggtctga aaccagccag aatatacagt aattgtcatt
      301 cagcaagagt ctatcctaga aagtcatgct tcagtggaga agactgagtt tccatttgaa
      361 atcaacaaat taatccaaga caggtatctg aaagggcaag tttaatagga agcagctact
      421 gggctctcaa ccatgataaa atgttattgc tgtttttggc tgggaacata cgatactctc
      481 tgcataagag ctccattgct gttcaggaga tatactgctc aagctatcaa aatgatgaca
      541 gtctgccagt ccccataaca acttgccatt ggacgtggca agagcttgtg catgcgcgtg
      601 tgaatttaca attaccaaaa ctcccttata agcagaaaag aagtccatgt attaactgta
      661 cttataataa aacaaaaacc ctcaaatca
//
LOCUS       KCOD01000085             555 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 9473pyr ultra-conserved element locus
            uce-2023, sequence.
ACCESSION   KCOD01000085
VERSION     KCOD01000085.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 555)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 555)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..555
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9473pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>555
                     /note="ultra-conserved element locus uce-2023"
BASE COUNT          177 a          107 c           81 g          190 t
ORIGIN      
        1 tttgttagaa taatggctta tttattcttt tatactgtgt agcacttggg gaccacatcc
       61 atttaccaaa ataataccaa attagtactg caaatattga aatcagacct ttcagactaa
      121 ccagtggcct aattttctct tcaatctgct cttaatctca attcatcaat aacactgcct
      181 tattatagga ctttgacagt gagctagagc ttttgataaa ttatacatct caagccagat
      241 ttaaaatttg aagctcaagt gctaattatc tgtacaggcc tagttaataa cgagatttct
      301 tgttaagtat ctgatcacag catgggcatc atttgtcaag aacctcaagt ctaccttgga
      361 gactagctct tcgaattctc ccttgcctac catatgtaaa attgggatct ttgtttctat
      421 aataaccttt tattaggaag ctgacataat gattaagttc actgtagaca catacaatga
      481 gttagacaat tacccttgct gctttaaact actcaggctc ctagcaagac aaaataatta
      541 atattgaatt ttaat
//
LOCUS       KCOD01000086             795 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 9582pyr ultra-conserved element locus
            uce-7362, sequence.
ACCESSION   KCOD01000086
VERSION     KCOD01000086.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 795)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 795)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..795
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9582pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>795
                     /note="ultra-conserved element locus uce-7362"
BASE COUNT          248 a          159 c          169 g          219 t
ORIGIN      
        1 aggctttctg gagagggatt tgagcagctg ctgcttagca gagaatgaaa ttcagggggg
       61 aggagaaagg gggcaacaaa caacatttgt ttaaaatctg gcaggagcat cctaattaga
      121 tgaattattg aatggatcat caggattgct ccccaaaatg ccatagggca ggagagccct
      181 tagaggacat gttgatttaa gactgcaaaa atgatcccaa agagcaaatg tggaacacta
      241 aaggctcatt tgtctcaaaa atcacacttc ccactcagcg ccgttgctca cttgccatgg
      301 gttgtaacag ttaatcattt agacagggat aaatatttat tcagggacta ccttaacgtt
      361 gaatgttatt tcctccatga cgtaaactcg ttcaggaaat gctttagcca cctcctccac
      421 actgttaaaa tactgcactg gctccttaat atctcggtct tgttccagca gcttaaactg
      481 ccctgaaaac agatgataaa cagaagaatt gtaagatatt tatactggac aactgtcact
      541 gtggcaactg ctggctcaac ttcttcacca ttttgctcgg tcaattttcc cagttattag
      601 caaccaaaca agaagacgaa agattgtaga gtctcctgaa cctgccatga aagacctttc
      661 actggctcgg aatgaaaaga acgtgtggca gtcaaagtga aattaaaaat tggtttatca
      721 catgctctct agaaatggta aataattacg gaggcatttg catttgggta cttaattcag
      781 tgtcattgta tctgt
//
LOCUS       KCOD01000087             420 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 9687pyr ultra-conserved element locus
            uce-2435, sequence.
ACCESSION   KCOD01000087
VERSION     KCOD01000087.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 420)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 420)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..420
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9687pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>420
                     /note="ultra-conserved element locus uce-2435"
BASE COUNT          122 a           66 c           94 g          138 t
ORIGIN      
        1 aataattgct ggctaacaaa tagcccagaa agcaaactag catgaactct tcccagattc
       61 aacaagactg acatttatag ctttattgta gcagagacat ggcatttgga ttcagattgt
      121 ttggactgca gagtgtcagt ataaatagct atgattgact tttgtatgga gcacatctgg
      181 aagcaattta tggcattcca gctagattaa agcatgtttt aaaggcattt caccagtctt
      241 tttttctggc tatggtgaat aaagtttcaa agacagttta gctgctgttt ctgttaatgt
      301 ggaccatagt gaagtcaaat taagggcaac tggggaaaat ggtgcatttg tttttgtttg
      361 ttttgctttg tttcccagaa taggaaaacc ctgaagtgag tgcaactggg gctatgttct
//
LOCUS       KCOD01000088             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 9796pyr ultra-conserved element locus
            uce-4952, sequence.
ACCESSION   KCOD01000088
VERSION     KCOD01000088.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9796pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-4952"
BASE COUNT          188 a          124 c           95 g          195 t
ORIGIN      
        1 aaggagttat ttgaggcatg aatgtctccc ctaaagctgc agcaatcatg tggcattaga
       61 cacttccgga atcctatagc caacttgaaa aatcccagac cccttttttc cctaattttt
      121 gctctgatct gtaattttat ccacatttgc actagtttga gcattctggc tctcccatct
      181 gaaagcctgc aattactata taattcttcg caatttcaca tgtcctaata tggactgtaa
      241 tttttgcgca agacaatttc ctgctatttc aagcatcaac attgtcaaag ttgtatgtac
      301 ataataaatg ggaatatcaa tgcatagttt ttagcataac atcttgactc ctcgataatt
      361 atatccgttc ggagcctacg cagaattagc ctgaattgca tggtaactgc tgctgcttta
      421 aaatttttaa aaattactca taattttccc aaagattacc aagatctcga gtgcacaatg
      481 tcatcagcgt aatgaagagt aaacatttat gctaataatc tgcaattttt ttcatcagct
      541 ataaagacag aggctatata gcagaaaatt tcagtcatat tctgcaagag cagagctgca
      601 aa
//
LOCUS       KCOD01000089             356 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 9904pyr ultra-conserved element locus
            uce-1457, sequence.
ACCESSION   KCOD01000089
VERSION     KCOD01000089.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 356)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 356)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..356
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9904pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>356
                     /note="ultra-conserved element locus uce-1457"
BASE COUNT           96 a           73 c           65 g          122 t
ORIGIN      
        1 aaaatctgct gaacactaat tatttaacct tacctcctac ctactttctc tctttattct
       61 gaggtttctt aagggctata atgagctgtc cccacacaaa caggccaaat tagtggataa
      121 ttatgctggg tctgtgaatg ttctcactcc tcctttctta cagtttcaca acattaccag
      181 aatggtctgt cacctcccta ccaattaggc acaattacta ctttataaca ttagtggtgg
      241 caggcttatt accttggaga atatgtaggg gagggttggg gagagtgggc agtgaatcag
      301 gccataactt gtataatcct tttattttta ttttgcaaga tatttataca ctgtta
//
LOCUS       KCOD01000090             846 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 10014pyr ultra-conserved element locus
            uce-1610, sequence.
ACCESSION   KCOD01000090
VERSION     KCOD01000090.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 846)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 846)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..846
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10014pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>846
                     /note="ultra-conserved element locus uce-1610"
BASE COUNT          200 a          192 c          174 g          280 t
ORIGIN      
        1 cccttctttc cgtttcgttt caaaagggca aaagtctggg tagcgagcgc ttgcccgcgg
       61 cccgtgccac gggcggtgct tgcctcagct gctccatcaa aagccgctgt actaacggat
      121 cctgactgca cttagctttg tttccctgat atggtcatat cacatcagcc ggggcacatg
      181 tgacattaca tccgtaactt taagcatttt gttgctatct tcagttggag caatgttgcg
      241 attcccgagt atattttttg gcagtccata gcacatttat gtcagataat ggcctattat
      301 tgttctctga tatggccggt tttccacgaa agaatgaggc cttttttccc gcatttgaat
      361 ttccagataa taggctttga cttctggctg cacgtttatg ggtcttttca tgttatcaac
      421 tcggctcata gcgtggaact aaagaacaca gactgcaagt gacaggccag ccagtcagca
      481 aggcaggcct gtcagtatct ctcatccact aatgatttcc ctttagtcta ttttctgtct
      541 cattggccgt ttccttcaaa aacaaaattg ctcatttaaa ttcttatgcc tggggcattt
      601 tggtcttcaa atattgttgg aaagtgaaag gattaggcaa aatatgcttt tttaaaatgt
      661 taatatattt tctggttcac tttctcctct gaggccaatt aggaaatttc tgctggctgc
      721 attaatgtca aactgacaac cctcgctata attacactgt gcttgaaacc taactttcac
      781 ttgtgggtag atgactgcgt ctggcagtga cattgaattc gctctgccag cttttgatca
      841 tttaat
//
LOCUS       KCOD01000091             606 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 10124pyr ultra-conserved element locus
            uce-4264, sequence.
ACCESSION   KCOD01000091
VERSION     KCOD01000091.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 606)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 606)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..606
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10124pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>606
                     /note="ultra-conserved element locus uce-4264"
BASE COUNT          207 a          128 c           90 g          181 t
ORIGIN      
        1 ccacacagag atcttaatcc tggattaatt attttccatt ttaattaaag cagtattgct
       61 ttttcttaag ttctttatct actttcttta agtaaagcta tttgatactg gggattgtgg
      121 aaaacatttg ttcgtgatta tgcagacata cagtcaaaca agactgaaac aagagcagca
      181 tgcaaaaatg tatttaagga ctatcatccc aaaatgctgc taaaagctat taaccagtac
      241 gtgttaattg ccacagcatt catattaatt ttcacttcgg gcccgacatt gtggaatatt
      301 tcccctgata cattttaaac aaagtttaat ttaaggaact gcttctatca acacttatga
      361 aaattaacag ccaagcaatt agcactcatg aattatccct tcccccatgc ttgctacagc
      421 atcattttta tgagaaattg ttgcagccac aagaaacctt gtggcactac aaagaacgca
      481 ccaaaggaag catttgtcca gccaaaaatt acactgacca attttttatc tccagtagtc
      541 aaacaaacgc cagagaactc cgtaaaatca ggaaagcctt ctaactccat tcatgacagc
      601 agaaat
//
LOCUS       KCOD01000092             631 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 10233pyr ultra-conserved element locus
            uce-5927, sequence.
ACCESSION   KCOD01000092
VERSION     KCOD01000092.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 631)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 631)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..631
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10233pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>631
                     /note="ultra-conserved element locus uce-5927"
BASE COUNT          220 a          123 c          113 g          175 t
ORIGIN      
        1 ctgctgctgg agacacaaga attatctgct gctctggtag ggaaacagaa ttaaaacccc
       61 tctaacatgt aggtccatta tttccgtttc acaataatta tgcagtgtgt taaacaatgt
      121 acacttctat ctgatgcaaa gcccactacc tggaaacaca caattaccat aataccttgc
      181 tggttagaca tacggtgaga ccatgattat gcagagtgtt ggaagaactt tatacataaa
      241 attattcttg aggagaagac cacgaagtaa aaagctaagc cagcacatta tctaattctc
      301 aatgtaaaat aatgcagaag tgcggaagat gaacatctga tttgtcacat ctgatacgct
      361 aatgttttat ccaaaaggaa gaacacattg taacatgctc attcatctgc ataaacacca
      421 cctggccctt tacaggcacc tactcaagta acaaaactta atggcagccc atttgtagcc
      481 atttcactgg tagagatgga aagaaagtaa catatttaca tgagtgtctg ttgaggaaca
      541 gcttcccact caatttgaaa cctcattctc agtgactgta aattaaggaa attttaaaga
      601 aatgttagaa aatattgttt aaagcctgta g
//
LOCUS       KCOD01000093             421 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 10345pyr ultra-conserved element locus
            uce-1070, sequence.
ACCESSION   KCOD01000093
VERSION     KCOD01000093.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 421)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 421)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..421
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10345pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>421
                     /note="ultra-conserved element locus uce-1070"
BASE COUNT          142 a           80 c          101 g           98 t
ORIGIN      
        1 gaacccacaa atgcgcttcc cagacacact attgatttct gacctacaaa ttactctcct
       61 tcaaggaggg ctgatgtgga gcacagacag tgggggaaga gggctggagt agacagggta
      121 cttctcagct gcaatctgca taatgtttag tattcagtga gttaaagcac gcaatgaaag
      181 ggaactgtca gcgcaatcta gaagatataa agaaatgaag gggtgaaaaa aagccgtatg
      241 ctaataatcc actcagtaat taagtgaaga tcgctgccaa gcgccactgc cactttcaaa
      301 gggtaatttg tacaggaaat catagagtca ttgtcaaatc atttcaggat aaaaggaaag
      361 tcatcaacta agataagata aatgctgggt gtctggcagc atgtgcccta ggaaatgcct
      421 t
//
LOCUS       KCOD01000094             521 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 10455pyr ultra-conserved element locus
            uce-5357, sequence.
ACCESSION   KCOD01000094
VERSION     KCOD01000094.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 521)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 521)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..521
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10455pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>521
                     /note="ultra-conserved element locus uce-5357"
BASE COUNT          167 a          106 c          107 g          141 t
ORIGIN      
        1 gccaggaaga tgcttgcacc aaacacagca tgagccttgc atttaatcgg ttactgtaat
       61 aaacatataa aaaaagacca tgagaggaca gagcagtggc tacataaaag gacatcaaat
      121 gacacatcct ccatctccca gcaaataaaa aagccatcag ctcataacaa ggcggtgata
      181 aaaggtgctg aggccagtaa gattaagact ttgtaataag gttcgggcgc caaaactgac
      241 agccattttc ttttatattt atcatgtctt cacattgggg tgagaagcca ggagtctgtc
      301 ccattgctgg ctagaattta tagcagctcc attattagga gattgcactg aaatggggca
      361 gaggtatggt tttctgagaa cgctacaata gcctcctaca ttatacactt gacaggtttg
      421 tcagcgctta gtaacaagcc ttgtaaagta ctttaatatc attagcacta ttttcttaat
      481 gtgtctgctc tcctagcagc ctgaaaatgt catatatcat g
//
LOCUS       KCOD01000095             335 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 10558pyr ultra-conserved element locus
            uce-2677, sequence.
ACCESSION   KCOD01000095
VERSION     KCOD01000095.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 335)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 335)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..335
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10558pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>335
                     /note="ultra-conserved element locus uce-2677"
BASE COUNT          118 a           53 c           57 g          107 t
ORIGIN      
        1 aagtaaaaaa attagaaaac aaatcccttt ttaaataaaa tgaagtaaaa gacctacatt
       61 gcttggagga aatgctaatt gaaaatacct tgctaatgct agctagtcac aggaaggaaa
      121 cattaagtta ttatttttaa taatgtttac aagtatatcc agccatttcc agccagtgaa
      181 aaatgttagc cttggtaaaa tgtggcagtg ctacttttca ctggtgatgc tgctcatctt
      241 ctctctgata gcaatcatta attttatttt ttaacccagt cttcaaatga agacagatga
      301 gcaggagagt tttaaatgca agctgcttat gttca
//
LOCUS       KCOD01000096             539 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 10666pyr ultra-conserved element locus
            uce-5594, sequence.
ACCESSION   KCOD01000096
VERSION     KCOD01000096.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 539)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 539)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..539
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10666pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>539
                     /note="ultra-conserved element locus uce-5594"
BASE COUNT          177 a           88 c           94 g          180 t
ORIGIN      
        1 agctatgcac agaaatatat acatttgatg gtcattatga cacatgaatg ttcaagatga
       61 agagtgaaaa atacatttca agttctgtat atatgaaaaa ctgacaatga tctgtaattt
      121 gcgtctaaaa attctataaa tctgctggtg ttttcagcat tgaaagcttg attctaaatg
      181 gaaaggtcat tatcattatt aagttttata agaaaatcag tacgtgtact agtatctatt
      241 taataactga gacatcatga atgtcagact taacacactt tgctgggtgc taataactct
      301 ttaagtgtac ccttgactcg agtcgaaggc agtattggaa tttttatgtt atctgaactg
      361 cctggtagca tttaaaagta cctccataat agccaggtaa aaatatagtg acttcagaca
      421 actttaccta attttgctcc tgtttcaaat gttaagctaa actcctttct tgcgaaagaa
      481 ctggatgtaa aggcaggtga gtcacaatgg acccgtccta cttaatcatt ctcttgttt
//
LOCUS       KCOD01000097             739 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 10871pyr ultra-conserved element locus
            uce-720, sequence.
ACCESSION   KCOD01000097
VERSION     KCOD01000097.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 739)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 739)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..739
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10871pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>739
                     /note="ultra-conserved element locus uce-720"
BASE COUNT          251 a          122 c          117 g          249 t
ORIGIN      
        1 attctgagag atgagaacgc cctgaggttc cggaagtgcc agggaactgc agcagggcaa
       61 tccatcgtgg gtacaacaga agttctttgt tcttgttcat gctttcttca ctctacatta
      121 acacattttt atcaaaaata gcaaaattaa ttttgcaaag ggatgattgt attgcaaatc
      181 actgttaatg ttaaaagact ggataaagaa ttattaatac cattaatgta atatctaagt
      241 tacacctata catccttttc catagaaaat ggttcttaat tttcaagttg ttctgcttta
      301 ttaaagctca ttaccatttc tcttttaata agtgctcttt aaagtcatta cctgcagtga
      361 agttaaaggc agagctatta aaaggttact ttaatgtgaa taatggcctc ccaatatact
      421 caagttaatt actattggaa actggttcta ttttaattta atgctgaatg cttaatgaag
      481 gatctgccgg gatagcaaaa ctgacaaaaa ttattcatgg tcaacagacc tactcttgct
      541 gtttaattta aagagataat atccgtttca agttctacat aactgcattt aaaaatcaaa
      601 attacaattt aatattttcc ctggatatgc agaaatgaaa aatgccattt ttgaatgttc
      661 agtagcatgg taggtaaaag agcaatcagt tcctcagctt gctaaaaata acattaaaat
      721 cattaacatc ttgtttcac
//
LOCUS       KCOD01000098             763 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 10980pyr ultra-conserved element locus
            uce-1781, sequence.
ACCESSION   KCOD01000098
VERSION     KCOD01000098.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 763)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 763)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..763
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10980pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>763
                     /note="ultra-conserved element locus uce-1781"
BASE COUNT          207 a          159 c          174 g          223 t
ORIGIN      
        1 taagaggtaa agggactctc tcttcctctc ttgtacactc tcggatatgt ggacacacat
       61 tctccttcct actcctcccc ccaaaaactg ggctaatagg aaaggtagca gtattgaaag
      121 gggggtagct taatcacaat tacttgaaca gttgttcttg gttgagtgtc ttggttcccg
      181 tttaatccat cactggcact tgtaaagtac agtgggcttt atagcagacg tcagtttgat
      241 gcttattgtg gttaacagtt aacaagtgct ggttagacac aaaacctgcc atgtgcttgt
      301 tttttttaaa gaaggccaca gtgttcccta agggttgtga gagaagttca tcccattgaa
      361 ctggtcagca agatatcatt agctcgttgt gtacatgaaa tccaggggtt agagcaccaa
      421 gcgtcacaag ccagtttctt tacctccttg agctgatcag aggatcagag tatcaaggaa
      481 ggattagcac tgacttggga tttgtgtgat tggttaattt attgcggcga tggcaggcct
      541 ttcatctatg gcaacattta atcagcacgg ccatggaggc tattacgggt tagctctttt
      601 ctcaagtcag ccagggctgc accatcagcc ctatcacaat tcccctgaaa tttccaaatt
      661 atctggaaca ggctttagcc tcacagtaat aaaaattaga agagatccct gatagtgctg
      721 gtggaaaagg ctttcacttg cacagggcaa attataaata gta
//
LOCUS       KCOD01000099             760 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 11082pyr ultra-conserved element locus
            uce-5857, sequence.
ACCESSION   KCOD01000099
VERSION     KCOD01000099.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 760)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 760)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..760
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11082pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>760
                     /note="ultra-conserved element locus uce-5857"
BASE COUNT          203 a          189 c          168 g          200 t
ORIGIN      
        1 tgcttgataa atgggacagg taacatcact gtggcattac aagactgtaa taaaccaaat
       61 agtgaatctg gttatcagca gcagtgctca tgactcagat gatgccatcc agcactgctg
      121 atctttgcaa ttgtcactat ttgtgtaaca ttgagctctg ctatccaaga agctccaggt
      181 ctgtttaatt taaataacct ccaatggaaa ggtcattgca aatcatgcag ccattaaaaa
      241 ggcttccttg gctccttgct cagcctaaaa tgacactatt tccttcatgc aaattttata
      301 gctggacatg cttttgggag aagaattatc accagacacg aggcagggag gggagggagt
      361 tgtgtggaag gtcaagcagg actcagaaag atgtggaaag actaccgacc agccatctgt
      421 ttctccttac tccttctctt tttctccagc ctgcggagcc tcttctcctc ccgcctcttg
      481 gcttcttcct cctcctggtg ctgccgacac ttgtggaaat tctccaccac cacccccaca
      541 aacatgttga ggacgaagaa ggccacgatc agcaagaagg aaatgaagta gaggagcatc
      601 catgggttgt agttcatgac tggctgcgag gaaggcaaat ttcaactgaa cctcaaattg
      661 atacatctgt gcccctttca gggagctcag gctgccctgc tcttcccttt ctgagacgtc
      721 tgaatgctcc taaaatgttg aggacagaag caccacctct
//
LOCUS       KCOD01000100             495 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 11190pyr ultra-conserved element locus
            uce-450, sequence.
ACCESSION   KCOD01000100
VERSION     KCOD01000100.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 495)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 495)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..495
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11190pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>495
                     /note="ultra-conserved element locus uce-450"
BASE COUNT          141 a          112 c           97 g          145 t
ORIGIN      
        1 ggctcccgct gccttttctc agtgaagatt taaggcatcc tccccttccc cccattcatc
       61 catacttttt ttttttttaa atgcttccta gtcaaacttg aatatgcaat gaagctccag
      121 agctttgtgg cggaaatata attaaactgg tgaaagatgt aaaagatgaa gaatggggat
      181 gacatcaggc cgatttcaca cttggcactc ggatggctgg gcccaagccg tgctcttgcc
      241 acgcaacaca gatcaaagtg cactgccact gctaaaaagg caaaagggga cttaagtatg
      301 ctaatcccca ggacaaatat attttaatct tgttagaata caagttaatg ctgcagctca
      361 gtggctgaac tttgtcagag tgtagagatc tacttttact ttagctctga atgaggtaga
      421 cctcctggtt tattcatact tcataaaagt aaatttacta aatgagcctc cttgcagctc
      481 acctagacac tcctt
//
LOCUS       KCOD01000101             282 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 11301pyr ultra-conserved element locus
            uce-2995, sequence.
ACCESSION   KCOD01000101
VERSION     KCOD01000101.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 282)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 282)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..282
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11301pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>282
                     /note="ultra-conserved element locus uce-2995"
BASE COUNT           90 a           43 c           77 g           72 t
ORIGIN      
        1 taaataaaat cagtgtgatg ggtgagcagg tcgactgtgt gagagaacac gtgcaaagta
       61 tacctcagaa acactatagg tggatgagca cgaagggagt cgagcctggt tgtgcagtgg
      121 ggaaaagaaa acattgttaa aaaagaaatg gtggcacagt aagggtctca gaaggttttc
      181 tgtataggtg gttccagcac tgagatagtg gcattcataa agtttccatg acccgctatt
      241 tcagaaactc caaatttatg ccttttaagg tggaagctta tt
//
LOCUS       KCOD01000102             522 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 11405pyr ultra-conserved element locus
            uce-1787, sequence.
ACCESSION   KCOD01000102
VERSION     KCOD01000102.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 522)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 522)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11405pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>522
                     /note="ultra-conserved element locus uce-1787"
BASE COUNT          144 a           98 c          103 g          177 t
ORIGIN      
        1 agcaactgct ctagctttgt ttattgcaca cataaataat catacttcaa ttgacatatg
       61 atctcttccc agattaaggt tgcctcgaga ctgcttggtt tgtctactgt aaatatgacc
      121 tgaattcctc tcaggatttc gcatgctgtt tttgaagtaa attattttct tctaatatac
      181 ctacacaact gtcacaggga attgcactgc agatttagtg atgttaagtg tcaattgtaa
      241 tttggtgaca accattttat tggccatgca tattgctctg cgaggaccta attctcagta
      301 tggaggccac cgtatcatta aaacccactg atccttcact gatgacataa tttgactggc
      361 agagagagga acagtgagtt gtttccacct gcatggaatc tgctatgtgt cagagatgaa
      421 tttgccttca aattagaaac agcatagcag actggtgtct gtgattttgc ttgattttaa
      481 ggagttttac tggaatgata catgtctgtt tagatatgcc aa
//
LOCUS       KCOD01000103             773 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 11515pyr ultra-conserved element locus
            uce-2294, sequence.
ACCESSION   KCOD01000103
VERSION     KCOD01000103.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 773)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 773)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..773
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11515pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>773
                     /note="ultra-conserved element locus uce-2294"
BASE COUNT          218 a          169 c          116 g          270 t
ORIGIN      
        1 aacatatata ctgtcattgt acctctcctg tgaggatgaa atggccaaat atttatacat
       61 atgacatttt ctttacatat ttgcccattt tgaaaattaa aatataaaca ttctggtaaa
      121 aaaatctgtt ctccccatca tgccacacag tcaaagccta aatcactttt gctttgtttg
      181 atatggcatg tataaaatac attaaaggtc tttgttttac tgtatcatga aattaaaaac
      241 catgcagtct ctgtaattac attgtccttt gccgtctctt taaaaaagaa aaagactgtg
      301 ttcaaatttt ccccctgttt tatttgcacc ctattaacaa ctgttactag agctttaatt
      361 atgcccctgt gattgcagag atgcggctga cttgtgtcat tttcctccca ggggatgctt
      421 tataattacc agcatccatc gtggctgcct gtaagctgat gcttttttat taccagttca
      481 ataatcactg catccttgtg aacatctgct ctacaagcca tgcatcggag gtcccagtgc
      541 ctgtcactcg atgctccctt gctgtggcga cccttttgcc ctcaccttca gtttatatct
      601 aatttgctta gcagaagctt catccagatt gcctcacagg aacacaatta atgctccaga
      661 tctgcaaaca aagaaatttt ctcccctttt tttgtcttat tatcttgatg tcatatccta
      721 taatttgtat tcacagcagg gtgaatcaat ataaatcgaa aaatatagta ttt
//
LOCUS       KCOD01000104             315 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 11619pyr ultra-conserved element locus
            uce-3715, sequence.
ACCESSION   KCOD01000104
VERSION     KCOD01000104.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 315)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 315)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..315
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11619pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>315
                     /note="ultra-conserved element locus uce-3715"
BASE COUNT           87 a           75 c           56 g           97 t
ORIGIN      
        1 tgtcagcacc aatccacctc ggcgcctccc cgctcttcag tcaggctttg tggcccctcg
       61 tcgcttgttg ttcaagctgt gtgtcacagc cagtcacaac agttacttca agcaaatttt
      121 cacactcttt ggctcaaact gctggcagca ttcctaaaga ctctgaggaa ataattccac
      181 aaagtggcat aaattaatgt gactaattaa catgatgtta attatttgta aattgtatgt
      241 ttggatacac attacttgag aggcatatgt tacattcaat gtttactgaa acaagtgact
      301 gctaatcaca tctcc
//
LOCUS       KCOD01000105             683 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 11723pyr ultra-conserved element locus
            uce-2874, sequence.
ACCESSION   KCOD01000105
VERSION     KCOD01000105.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 683)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 683)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11723pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>683
                     /note="ultra-conserved element locus uce-2874"
BASE COUNT          184 a          150 c          120 g          229 t
ORIGIN      
        1 aaaactcaca tttacaatct atcctaaaaa caagcagaac actgcaccaa cccaagcatt
       61 agctcaatta aaaaatgaaa tctcttctca gcttaataac ttgttagttc ttgacaagtg
      121 caacaacaca acaataagcc agtcaaaatg agtttttaaa gcgaggttat gcccttcatg
      181 ttgtgttatc acagtggcag atcaaactgc tgacttggac tctttctgcc agcagtgctg
      241 atgccgcctc tatgagctac tgtcacagaa tagtcatggt acctgctctt gcctatagaa
      301 aagcactaaa ttgaactcga agtagtgtct ttgtgatatc ttttcaacaa gtcatgtccc
      361 attcagtctg ctagtttatc tctgtcaggc tgggggccca agtggtttgc atgagctgtc
      421 agggataggt ctaccaacct gctcagtgct aaggaggtaa tgcatctttc gggcttggta
      481 tttcttttcc ttttctttct tttctaggtc tttcattttg tcttcatttt ccttcatttc
      541 tgcatactct tgaagttcac tcctgtgtct gctaacgata ttataacaaa tgacgtgcta
      601 gtgctctatt ttactttaca tagcttcaca gtgttctgtt ctatatatta gcagtatact
      661 gacaccactg gaatgtaaaa tta
//
LOCUS       KCOD01000106             601 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 11831pyr ultra-conserved element locus
            uce-1538, sequence.
ACCESSION   KCOD01000106
VERSION     KCOD01000106.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 601)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11831pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>601
                     /note="ultra-conserved element locus uce-1538"
BASE COUNT          161 a          120 c          100 g          220 t
ORIGIN      
        1 tcgttattaa tttttactat tagttgcatt gcaggacagc aagagccagc aggtatggct
       61 atagcttcta atgcagcagc ctttcatccc tctctgtaag atttaccttt aacctaaaat
      121 ctttcacccg ttatctataa tgtataatta taaatacatt gtagtctaga gtaagtacaa
      181 ttaaaaaggg taattcgttt ccctccctct ctcccatcct cccacccaag tccttaggtt
      241 taattttcat gattatgtta gattatgagt cattttaaat catggtatcc agtagagact
      301 actcctactc tgcagctctt ttcaacagtt gtttatggta gtttcagcct ctttctgcct
      361 ctctgaggct ctttattttt aaagcaaggc agacaaggcc taaaattatt ccattaaaga
      421 ggtgcaattt ttgtaatggg acttagagtg ctctgcagaa gtgcaggcaa gtttcttcaa
      481 tatcctgagc attattcgct catttagtta aatgatgttt ctaattccct ggtaattaca
      541 tgtaatgagg cactctttct cttcttgatg agactttagc ttaatatgag atgtcgtatt
      601 t
//
LOCUS       KCOD01000107             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 11938pyr ultra-conserved element locus
            uce-4332, sequence.
ACCESSION   KCOD01000107
VERSION     KCOD01000107.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11938pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-4332"
BASE COUNT          175 a          119 c           93 g          215 t
ORIGIN      
        1 ttcttaatta ttagatcacc aacatcaaat aaaagacata ttaaaccttc caggaagaga
       61 tgcagctttc cccaaagctg gttcagtgct gcttctctgc gcgcctgaaa atcagaaatg
      121 gctttgccat ctcatactgc ttctgtttgt ccattcttcc tgtctctgtt ttcatgtttt
      181 catttttcta tggctatgtg gaacacattt ctcagttaag tacttgcttt tgagagttgt
      241 tgccataaca accgtttcat tccacgatat gcacactatc tctgaaatac agaatttctc
      301 cttaaaggag catgtgccac acacatcaaa gaggaatatg gactcattat ttttacatta
      361 ttttgtgggc aaatagatgt tttccaatac attcttttct aactggattt tcttgttcag
      421 tgaaactatg ggtttttaag cattcctatc tcatagtata attttctgcc tgaaccccag
      481 aatattagga gacaagaatc tttattgttt ttttccaaag gtctgagaga actatgctgc
      541 agttaatgca tttaaaaccc atcttattag acagattatg taaataaaat ccattaaaaa
      601 tg
//
LOCUS       KCOD01000108             524 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 12045pyr ultra-conserved element locus
            uce-761, sequence.
ACCESSION   KCOD01000108
VERSION     KCOD01000108.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 524)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 524)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..524
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12045pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>524
                     /note="ultra-conserved element locus uce-761"
BASE COUNT          164 a           93 c           87 g          180 t
ORIGIN      
        1 tcccatcttt gcatttttag gctagttctg ctgcttgcta tagtaatatt tgttttatcg
       61 tttctatcac tccagtatgt atacttgcct ttcaaaatcc gtgaaaagta tttaaaaaga
      121 aaagagaaaa tgctagtatt tcaaaaccct attataatgc attttcaaat atgtcagaca
      181 catctttgtt aaaattaaac caaggattgg ttttgagcga atagccctat atccttacag
      241 atgctgtgga tggatgcatc taagctgctt attatattga tgggttttgc tgctctgcag
      301 caaatgaaaa caggcagctg cttcctccat caaagcaaaa agcagcctga gtttttatta
      361 aacgagtgtt catttcttct attgccaaaa ttcttacaca aaacaaaaga gcagttttag
      421 cacattattg cttaactaga catgaacaac tgacagcaag tgataagcct gtctgctttt
      481 cacaactggt aatcattttt ggaatagatg ttttaatata gttg
//
LOCUS       KCOD01000109             620 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 12156pyr ultra-conserved element locus
            uce-4494, sequence.
ACCESSION   KCOD01000109
VERSION     KCOD01000109.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 620)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 620)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..620
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12156pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>620
                     /note="ultra-conserved element locus uce-4494"
BASE COUNT          196 a          102 c          131 g          191 t
ORIGIN      
        1 ttttaaatgc ttgaagatca acaggaacaa ataaaagtcc acttttgtaa acaacttcat
       61 gtgtattaat tatcgtagat cttcccaaat acctttgtca ataagtgttt taaagtgttg
      121 agtctcatgc tgcattttac cttaatggaa acgctttatt ttaaagtgtg caagcctttc
      181 ctacaagttg taaaaaactt ttggctgaaa tctgtacctt cggggagaat ttctgatgtg
      241 ttccgaacat ggaagattgg aaatcaggac cagtttgtat gtcccctggt gttgtcaggg
      301 cttcaaatga cccaacagcc tgcaaatgtc acatttgaaa ttctgtcttc atgcctgact
      361 ctcagtataa atgaattaaa cagcagagca ggcagccagt caatatgttc ttaacagtga
      421 gagtgagcaa tgaaacagtt tgggggttgt ttggaatcag taaatagaaa gtgcatggaa
      481 tggctcacct agaggaaaat ctcaaatagg aaacagaatt aacctttaaa atggtcgagc
      541 agacgaaatg tcatagcaat atttttacag cattaggtgg gtaataacta tggagggttc
      601 atttggctac tgtgtgttat
//
LOCUS       KCOD01000110             406 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 12267pyr ultra-conserved element locus
            uce-4629, sequence.
ACCESSION   KCOD01000110
VERSION     KCOD01000110.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 406)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 406)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..406
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12267pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>406
                     /note="ultra-conserved element locus uce-4629"
BASE COUNT          121 a           70 c           79 g          136 t
ORIGIN      
        1 tttttccttt aaatttattc ctttgtattt gactctgtct ctctgtctca aaggcaaaca
       61 acacctaatt tcttttcttc aaggttaaga aatccatagg tatagggcat atttattcaa
      121 aggtttgtct agtgtagact tcattttagg agcaaacata aacacgaaga aactataatc
      181 ctggtgtaat gtaggaatct aattaagact aatgaggcaa cattaaattt aatgtatgat
      241 gcattttata tgccttacca ttagagctgc agcaagctgt tcgtcagagc gccgaacttt
      301 ggtgaataag cccctcaagg cattgttaaa caatctgggt ttaggccttc tcctgcccat
      361 taggttgtgt tgggcttgga aaaatctaga tataaatgga agtggg
//
LOCUS       KCOD01000111             747 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 12376pyr ultra-conserved element locus
            uce-7218, sequence.
ACCESSION   KCOD01000111
VERSION     KCOD01000111.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 747)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 747)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..747
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12376pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>747
                     /note="ultra-conserved element locus uce-7218"
BASE COUNT          189 a          130 c          183 g          245 t
ORIGIN      
        1 tcaagaggcc tgagctaact ggctttgcag agggctatta cccatttaca gtcaagtcaa
       61 aatagcttgt atttatataa ttcaccctga tagttttagc tcagcactga tacagattga
      121 atacaacatc atgcaggaat atggggatca aattacctga tttccattgg cttgggtctg
      181 ttttggtggt gtctcatgaa ctgcaggact aactgtagta gagtatgtat aagccacctg
      241 tggaatcaaa atggtttgct tattggcagc gagagctctc aagcagggaa cactgttctg
      301 gtcagcaatg gcaacaattg taggtaactg ggcagtgact gtaggtatag caatatttat
      361 gggattggca cttggtggga ttacatttac aataggatca gagtctgtaa cactgttgtc
      421 cttttgtggt tctttttttg cacaagttaa gttcaaaggt tcttcttgga cagaataaac
      481 actgttctgg taaacactag ttatggtaga tctttccaac agttctccat gttgctttgg
      541 tagcgaaagg tcaagaggtt ctatttgtgg ctcttcttgt acaccctctg ccgtgtacgt
      601 gtaaccctgt gaatttcttg atgaagaaag gtttagtggt gatgcagatg gcgtgctact
      661 gtgtgaacca ttcagagttg atccccctgg taaagtctga gatttcgttg tactgacagg
      721 attttgtgag ttattggtgc tgttctg
//
LOCUS       KCOD01000112             853 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 12489pyr ultra-conserved element locus
            uce-231, sequence.
ACCESSION   KCOD01000112
VERSION     KCOD01000112.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 853)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 853)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..853
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12489pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>853
                     /note="ultra-conserved element locus uce-231"
BASE COUNT          306 a          134 c          142 g          271 t
ORIGIN      
        1 ttggtttcag ttgtgtgcat agatatctca gtaattctat ctaatttaga gaagtcactc
       61 cagatttaca ccagtgctac tgaaaatcaa aatctggccc attgtcttag caaaatacac
      121 caagtcaata tcggttcatt acagagaaga agagagaaag ggaatgagag agaaaacaag
      181 gatttcgtta gcaatgcatt ctgtagtata aaagataaaa aggaatatcc aattaacaca
      241 ccactataat tgcttgcaga cattcttttt tatttaaaga tgaaatagct aagagttctc
      301 atcaaaactg gggtcacagc ctacatatta aatgaaagaa attgattggg ctttattaca
      361 ccctgactac tgcaaatgtg cctcaatcac tgattgctat aaatttattc ttataaacta
      421 ctaattgccc aagtcataat ggtaacaatg gtataatgaa attatcttga tcaagctgat
      481 gcacaaattt tgcttgacaa catgagcagt gtgagaaaaa aggaaagaag acatgcatac
      541 aaatacataa tgtttcatta aaattaaaac caatgttaaa acaactgttc tctgaagtat
      601 acaaagttct gtattagaag ggcttccttt agaaaaatca tttaagaaga caggcattta
      661 catttataat aaaatgatct tgcatttttt atttgtcttg aaaattaatg acttacttaa
      721 tcacatttga tcaaaggaga taagttgatg tagtcatgtg tttctgattg cattaagcct
      781 gatccagagt ggcatgatgg atatttaata gtcttgctgt ccctctatat cttgtcacca
      841 tttcttgata tgc
//
LOCUS       KCOD01000113             645 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 12601pyr ultra-conserved element locus
            uce-47, sequence.
ACCESSION   KCOD01000113
VERSION     KCOD01000113.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 645)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 645)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..645
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12601pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>645
                     /note="ultra-conserved element locus uce-47"
BASE COUNT          192 a          168 c          114 g          171 t
ORIGIN      
        1 agataatgcc gaggatgctg tcaacgcgcc ttactgactc ctgtcaaaat attttaccta
       61 gtagctttat aacccatcat tttcaaacta cagctcagca ttctgacacc attttgacag
      121 gcaccttaca atacctaaaa gatagcttga tcaatgttaa aaatgtttgg tacaagaagt
      181 agccaaaact gacagtgacc acagcaagct gaacagccga gttcattact gtgcaagaac
      241 ttgtaagcca ttgacaactt ctaccatgca ctctaaaccc cgtgtataat atcataagcc
      301 gttgtttgcc ttactctcca ctgtgtcttc tgcctccaaa aaaaggcaag atttgattat
      361 ctccgctgca tcagccaaga cagcaacacc agctgttctc attgtgcagc ctcttcctca
      421 cggcctacat gttaataacc tgatcattcc attttctcct tcaactgccg gctgcagcac
      481 agcgaagaga caaaaaccca ggcccatctg cagcagctgt aggcactgaa ctgtgaagcc
      541 accagggatt tataaactaa tctgtaacac aacactgcct tgtttttaca agtgagaggc
      601 cacatttgtg cagacctgat cttttcttgc aataaactag gaggg
//
LOCUS       KCOD01000114             385 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 12702pyr ultra-conserved element locus
            uce-5743, sequence.
ACCESSION   KCOD01000114
VERSION     KCOD01000114.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 385)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 385)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..385
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12702pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>385
                     /note="ultra-conserved element locus uce-5743"
BASE COUNT          113 a           63 c           98 g          111 t
ORIGIN      
        1 aaaaaaaatc cgcgatcatg tgggaaatgt tgattttaat ggaaaaattg cattgtgctg
       61 actttcatag gatagaaaat ccacagagtg agacttcagg cttggcacct gctccagaac
      121 cttcctgatg aagcaaaggt tgtcttcatt aagagcatta atattcatgc agcatggtaa
      181 ttttgacaca gaaaaggtct ctgtaacctt ttcttgtgtg agaatttttt acttctcaag
      241 gaaattacag tccagcaatg acttaattaa tgctgggttt cttcagtgga ttttgaagag
      301 ctgtcagttt gggcttgcgg tagctgtcaa gcagggagag ggctctggct aggtagattg
      361 aagggaagga gggaagacac ccgag
//
LOCUS       KCOD01000115             356 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 12805pyr ultra-conserved element locus
            uce-7103, sequence.
ACCESSION   KCOD01000115
VERSION     KCOD01000115.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 356)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 356)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..356
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12805pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>356
                     /note="ultra-conserved element locus uce-7103"
BASE COUNT           99 a           86 c           65 g          106 t
ORIGIN      
        1 agcagctcca tgaccccgca acgcggcggg atgtgcggct ccgctgaagg ctcctggccc
       61 atttgcctcg tgcaatcctg gggaattatc catatctctg acaagagaat aggttactaa
      121 tgcaccaaca cagctgtttt gacacttttg atgaataaca ttcaatacta ttaattggaa
      181 caattgcttt tcatttaact aaatcactag aattgctaaa ctaaattgaa acggaatgta
      241 attttgcctc gctctccttt aatatgggcc tctaaatgtc ttctccctga agaattagta
      301 acttaatcac ctaccagtga taactgtttc atagccctca gctggaaggc tttcct
//
LOCUS       KCOD01000116             663 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 12910pyr ultra-conserved element locus
            uce-2870, sequence.
ACCESSION   KCOD01000116
VERSION     KCOD01000116.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 663)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 663)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12910pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>663
                     /note="ultra-conserved element locus uce-2870"
BASE COUNT          178 a          121 c          146 g          218 t
ORIGIN      
        1 ctaattttct tctggtggga acatcactgg atgactgagg cattatcact ttgaaaagaa
       61 ccttaatcgt gtgatcagtc tataaactag atattgctca gtgcgggctg gggtggctgg
      121 cctgacttca ggggaaccac tcacttcatt ttacatggtc tggactttgg atttaagtct
      181 gccaaatatg caataagagt taatctcagt aaattattct gagctttgca aatgcttgtt
      241 atttaatgtg caggagtttt gtttacaatg ggcattaggg aatgtcagtg taagaagagg
      301 tggacttaat gggttaaaaa ctgtgtaaat gttactctag ttaaattaca gcttgttgtt
      361 cagatgaata ctctccactt ctcatatagc tttaaattat ggacaaatgc ttgcaattgt
      421 gaactaccta cattgtggct gcctgttccc aggcttcatc aaccctagct gtccaatggg
      481 attactgtaa gctttcacgg cagtctgcca gccactgatc agaaattcat atccctggat
      541 gttagattgc tctctttatt ccatccttgt gatggctgtg attgctgtca tggtgttagg
      601 ttagaaatta gcattttgtg gcccaaattt tgccatccag aacataatca gaaaaaagag
      661 ggg
//
LOCUS       KCOD01000117             603 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 13020pyr ultra-conserved element locus
            uce-6938, sequence.
ACCESSION   KCOD01000117
VERSION     KCOD01000117.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 603)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 603)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13020pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>603
                     /note="ultra-conserved element locus uce-6938"
BASE COUNT          204 a          103 c           98 g          198 t
ORIGIN      
        1 aagaaatgtt tgctttatac tctgcacaga tgctgtacaa gcaaaaatct cagtatatta
       61 atataaactg tctgaaaaaa ttcgacccga tttcataaga ccagcaaaaa caaaacaaag
      121 ggaagcatga cgtttatgtt cctctagcac aaccatgcaa gctgagctgt gaaactgtga
      181 tggaaatatt agagctgttg tgcctgaaaa aacgcagtga tcatttcatt cttcctgtct
      241 tttaatgctc cagggttttg gagacgaata ggagcaataa gttcactttg cagaattaat
      301 gctgtaattc tttatcataa gagcagagca ttacctcaat ctgatttttc tacaaaatgg
      361 ttcaaagtct atttttaatg atggccctaa tttgttaaca ccttttaaat tattaatccc
      421 ctttatattc aagtagttat tgcatgtcat aacaatgtat ctatgcaggg aaatttaata
      481 gtattttctg catgtcaaga aaaggcttgt tctgcaaaat gctattaaaa ctgataatga
      541 gctaaatatt tgccatagca aacactgaaa ttactatatc aatcaacttt gggttctctt
      601 att
//
LOCUS       KCOD01000118             700 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 13129pyr ultra-conserved element locus
            uce-4553, sequence.
ACCESSION   KCOD01000118
VERSION     KCOD01000118.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 700)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 700)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..700
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13129pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>700
                     /note="ultra-conserved element locus uce-4553"
BASE COUNT          221 a          138 c          110 g          231 t
ORIGIN      
        1 tatttggatt atcttacttc taaacttcca aacattccca aatcatccta ccaaggtcta
       61 aaactaagtg tgctccaagt tctccttgag tttttttagg ctatggcact gtaaaaatct
      121 tagaaaataa ctgcttgata aaagcatata gtttcaaaac cactcaacaa aatactcatc
      181 agaagggatc ttttgctatt gctacccaca cgcaatcaat atatcacttt aactacagtg
      241 cttttaccct ctgtttatca tcccttctga agccatatgg aatactcatc ttccctaatc
      301 cttgtctata gtatttccaa agtactttac aagcctggag taatggactt taatgccttg
      361 cagcagctga gctggtagca tatatgatac cttaaatgta acaatcaaag gagcatgcaa
      421 gattttggta tttccgctga cttgcagatg tgcagtatcc aggtccaaaa acagtaatgt
      481 caagtttaga ctaaaagtgt ttaaaacaaa ataatgtctc actgctctgt gtcaacactc
      541 ctataatgtg agagaatatt ctctgataga gagagcacca gtattaaata tctgttatct
      601 gagctctaca gtaatatctt ttttgtatgt ttgtccatga ataaccttag tcaagattta
      661 tgtaacagag tgtattgttt tattaatcca gagcatgtgg
//
LOCUS       KCOD01000119             482 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 13239pyr ultra-conserved element locus
            uce-2879, sequence.
ACCESSION   KCOD01000119
VERSION     KCOD01000119.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 482)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 482)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..482
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13239pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>482
                     /note="ultra-conserved element locus uce-2879"
BASE COUNT          139 a           95 c           90 g          158 t
ORIGIN      
        1 agtaaattct atttcaaagc tttccatacg cagaccaaac tcctttatga cctagaatag
       61 tctcagttac acctaagagt tggcatctca cctcttgttt acaattttat actaatcacc
      121 ttactgacct ttcagtattg aatttatttg ctgttgcagt gccctactct ctactgtctg
      181 aatattaaat gtgtttgttt tcccagaggg ctagagaaca ttggacaaaa gggttcagca
      241 ggagagagtg aaataaaaag aggttgtgag tctttaacct tgagcctgaa atgaatgtga
      301 accaaactcc agatacttgg cttagatgaa gccaggtaaa cattcgagta taagcccaca
      361 cactaccaac cctaaacagc tgttggtgct taccaggctt tggatatttt gcctagatgg
      421 ttgtacttag gactgacatt tttcttctga tgggatgtag tatctaaaat tctatttctt
      481 tt
//
LOCUS       KCOD01000120             589 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 13343pyr ultra-conserved element locus
            uce-2933, sequence.
ACCESSION   KCOD01000120
VERSION     KCOD01000120.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 589)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 589)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..589
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13343pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>589
                     /note="ultra-conserved element locus uce-2933"
BASE COUNT          175 a          148 c          105 g          161 t
ORIGIN      
        1 aagccagagt gcacacagaa aatgttcagc cattcagagg tacaaaaagc agtaatctta
       61 gcctgaaaca attgtactga accgaagcac tactcctctt ttctagatct acttttaaga
      121 tccctgtcaa aacagccctt caaacacatt tgattgggtt ggggctcatc acgctgtcac
      181 caactcactt ttcattaggc tgttgctctc tgttagccta gccaagcaga agaactcaaa
      241 cacatgcaca aattaaatcg acatccaaac tccaccaata tacaaagcaa tttaaatgat
      301 attcattaga gcgatgacaa gtcctgatga ggctttcagg agcggagtcc ttcagcttct
      361 gccgactcgg tttcatggtc attgaggcgg aactgcagtg actgtacctc cagtttagag
      421 agccaagaat atgactctgc ttcctgacac acctacctca ttcttctctg cacaggttta
      481 cagctgagca caggctacag ttcttcctgg gctgtgcact gttttagcaa accacctaca
      541 aatgtgccaa ttaaaaagaa ttccattttc aagtaatttc atttcactt
//
LOCUS       KCOD01000121             540 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 13453pyr ultra-conserved element locus
            uce-5083, sequence.
ACCESSION   KCOD01000121
VERSION     KCOD01000121.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 540)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 540)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..540
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13453pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>540
                     /note="ultra-conserved element locus uce-5083"
BASE COUNT          218 a          103 c          101 g          118 t
ORIGIN      
        1 aaccagaaac aaacaaacag atttataact gaagaccgaa aggcaaacag caagcaagcc
       61 aagtactgaa cctaaatgta gcatttttat tgacttctta gaaaccaaat aacctggcat
      121 attagtgtgt gcattctgca acagacattc agccccattg tactacttag aagagaataa
      181 aaagaaaccc tactgtttga aatccagcgg aacatcccca caacagagca caactgttcc
      241 ctcatgcatg aatgggaagg agatgaaaga aaagatggac ttctgaggta cagcaaaaaa
      301 caaagacaac aaaagtgctg atcatgaggg aatgacacaa ctcattgctg caaaaaggat
      361 gagagaaagg agctcaaaca atggtgcaga cagctaagtg acatgtagaa gaattgaaaa
      421 atctacagaa gtgtcttttc tttccacact tgatgagaaa caattaaatg ttggtacatc
      481 tgtcataaaa aagataattg aaacctgtta ccatcattat agacggtaac ttaactacca
//
LOCUS       KCOD01000122             526 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 13559pyr ultra-conserved element locus
            uce-786, sequence.
ACCESSION   KCOD01000122
VERSION     KCOD01000122.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 526)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 526)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..526
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13559pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>526
                     /note="ultra-conserved element locus uce-786"
BASE COUNT          173 a           87 c           80 g          186 t
ORIGIN      
        1 tccttgctgg ttgtcctgta aagccataat gattattttg ggaagtcctg taagccgtgt
       61 gaattttctg ggaatggttt gaaatgtttc cggttaagct ctattaacat ctcaagaaga
      121 aaaactaatg tttctaccac atattttatt aagcccttta ggtcctttta caagagagga
      181 aataccaatt aacgtataat ttagcagaac aaaatattat cccatttcaa ccagtaccca
      241 cttccttgaa gtttattcaa gcattaataa ccatttaatg caatttaact acactgaggt
      301 atccgttaca ttaatatcat atatccatca ggaaattaga gttttgtctc tatgaatttt
      361 gtattacaag aaagtcttta taattttatt ctgcacttta tggtggctaa tttaagtttt
      421 aaaatggttc agataacttc ccagtctcta cgctgtaata tgactaacaa attgttactg
      481 atgttaaaag atcacgaaca catcatttat taaagagaga gaagtt
//
LOCUS       KCOD01000123             737 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 13668pyr ultra-conserved element locus
            uce-6530, sequence.
ACCESSION   KCOD01000123
VERSION     KCOD01000123.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 737)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 737)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..737
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13668pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>737
                     /note="ultra-conserved element locus uce-6530"
BASE COUNT          243 a          161 c          136 g          197 t
ORIGIN      
        1 tttaatatgg aatgaaggca gtttggcagg atatgcacta cttcaggtaa gccagaataa
       61 acagtagcat tgattaaaag gagcccccta ttctgcacct tcacctcctt tgccacaaat
      121 gccttgctgg tttatttacc tgtagagctg ttataatatt ttgctttctg aagagatttg
      181 gaagccacct gccgtacctt tggcatttct ttaacaacaa agcacttcag gctcaagtgc
      241 aagggcccat tgttctgctc cacaacatgg aaaagaagat gaatccagaa gcacaggatc
      301 caaacagaaa ttattattga tttaatcaca taatcagcag caaacacttc aggctaagat
      361 agcaaatcca taacagcctg cccacataac cacccttaca aatttaccag caaaccactg
      421 cgcacactta gcaaacaaga ggagcaaggg tcaccttcac ttggcggcaa aatattgaca
      481 ttcttaaagc ttaaatatgt tttgagttaa gtgttatcaa tcagtgataa gagttgaatg
      541 tctgttaaac ataactacat tggcagaagg attatagaat gctttcttgc cataatctag
      601 aagcatcttt cagacaaaac tctgcttgaa atcaattgtg cacaaggagc tgcctgctga
      661 gacccattca gtgacataca aaggaagaga gagtctccct gtgatcttta accataaccg
      721 gttatctaat gagacca
//
LOCUS       KCOD01000124             752 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 13776pyr ultra-conserved element locus
            uce-665, sequence.
ACCESSION   KCOD01000124
VERSION     KCOD01000124.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 752)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 752)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..752
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13776pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>752
                     /note="ultra-conserved element locus uce-665"
BASE COUNT          205 a          168 c          149 g          230 t
ORIGIN      
        1 atcacactgt ctattagctc actttctaac aaataggatt gagaaatata tggcaggaac
       61 tgcaacggca catttccaac taatggttaa aatgtcaggg cgataatgta caagcgcatc
      121 tgccctcaaa cacaaaatca aacgcagctt tacaagggct gtcgccattc cactctagtt
      181 aaagacttgc aagcttcctt cttccctttt gcagggctgc agtttggaag ctgctgcatc
      241 tcatcagggc tcggtttgcc agtgctgtac tgtacttcat taggcagctc tatttaatgg
      301 tttcaacaaa agccatcatt ttagcccaac tgccttgact aaattaaaat ttccaatctc
      361 tgttttagtg ttctgccact gatgtataca taagcaaaac tggtcaacat ctgccagggg
      421 gttggccaaa agttctgtaa agatgtactt cacatttctg aagcatgtgc aaagtaacaa
      481 cgtacttatc ctcctgaggg ctctcatgat tttacttcac catttgttca gacacacttt
      541 agcagcatat aagccataca gttgattctc cccttggttg cagttttatc tgtagtgtca
      601 ttttgagtaa ttggggtatg gtagctgatc aactttcagg tttctcattg gcagaaaggg
      661 actgtattgg caccaagaaa gaatatgatg ggtcctctcg gtagtgtccc tcttttgcac
      721 ttggctaccc aaggccatta gaaaataagc tt
//
LOCUS       KCOD01000125             737 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 13888pyr ultra-conserved element locus
            uce-54, sequence.
ACCESSION   KCOD01000125
VERSION     KCOD01000125.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 737)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 737)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..737
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13888pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>737
                     /note="ultra-conserved element locus uce-54"
BASE COUNT          196 a          162 c          129 g          250 t
ORIGIN      
        1 catggtggtg tataagcaat tattagagat tcctattaga gttttcccaa gttccttatt
       61 gtagtagaca acaagcgtgt tgcatttagc tagattatat gcatggttat ttactagcag
      121 aagctgatgt ttttctcccc tctattttta catttgagga taaaatacaa tttatattct
      181 gggcatcatc ttgtggaagt tctaaatcac ttcatgaggc tttcagccta ggttatgtca
      241 tttatccatc agcactcagt ccatttaatc cagacctctc agctgtacag acctagctcc
      301 tgttgtgagt gatcggcctg cttgagtgct cccagcttct cctgtcacat cacatttgca
      361 taaaagagga cggataacca aatttgagca cacaaatgaa aatgctaagc gctgaacctg
      421 tcacagttgt tgttcaacta attgtgaaaa atttgatttg ctggcttttc actgtttatc
      481 atgtggaccc ccttctcaaa tttgccttgg cttctgcttc tgtacatgta gcttttaaac
      541 tctctacaca agcagcccac cctggggatt acttacctct cctaccagct tttaatgttg
      601 gctcatctac ttgactaaat taggccacca tggcaaacaa acacataatt aaaaacctgg
      661 gaaagacaac tgcagttgca cttcttaaat tgattttgca gtctattact ggtatatgcc
      721 tttgcatttt gccattt
//
LOCUS       KCOD01000126             549 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 13999pyr ultra-conserved element locus
            uce-6512, sequence.
ACCESSION   KCOD01000126
VERSION     KCOD01000126.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 549)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 549)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..549
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13999pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>549
                     /note="ultra-conserved element locus uce-6512"
BASE COUNT          192 a          111 c          112 g          134 t
ORIGIN      
        1 tctctaagca atacacatta gttttcaaca tttcccacaa taattcttat ttgtcaaagc
       61 tatgtaacaa tgtataggga catcaggaat gcaaatcaca aataaaagac aaacacagaa
      121 atgaggaatt tgacacagag atcaatcatt ttttccacat gcaaatgatt acggggctct
      181 ctgcccagcc cagggagtgc agacatgcag agcaacggat caaggcgtgc acttttcctc
      241 tgcaggggaa ccatggagat gacagcacag aagagaaaag gcacttacag ttgttctaga
      301 gaggcaagtc ctttaaatgc ttgcctgtca attgactgga tttcattctt gtacaaatag
      361 ctgaaacaag aaacaatcag taatattagt acacaaacaa gagctacatg aaggtggaaa
      421 agaagaaaca tgtgaagaca gttcaactac atattagaaa aatattctgt ccttgagatt
      481 tcatcccaga tgactactag gaaagtctga ggccttgaag gcccatggtc ctgggcttcc
      541 cagtgctca
//
LOCUS       KCOD01000127             690 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 14107pyr ultra-conserved element locus
            uce-2845, sequence.
ACCESSION   KCOD01000127
VERSION     KCOD01000127.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 690)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 690)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..690
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14107pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>690
                     /note="ultra-conserved element locus uce-2845"
BASE COUNT          221 a          120 c          140 g          209 t
ORIGIN      
        1 gaaaggtgaa aggaataata tctttctgaa tgtttaatta atgacaattg ccagttcttt
       61 tgccaataac aaatgtatgt ctagggcagt tatttctcat tctaaatacc taatctggta
      121 ttatatttca tctcaaagaa ctaaatgaga aaagatgctg taatctaatc ataccacaat
      181 ccaggtgaca tctgtactag gcagaatact gttgttattc tgctgtctag ttgctgttgc
      241 tgagaatgat gaagtagcga aattacattt tcccattatt atttccagac actctctggc
      301 aatggtttgt tgactctaat aaagcttcag acaaagctgt cagcagagga aatggcagaa
      361 ggggagcaag gaacagcctt cacagcaata catgaatcta aaatctccgt gataggttgt
      421 gcatttcctg ataaaattta agtgtgtttc agaatatatc acaaagctgc agctgaattc
      481 tagagggata aatgtattct atcaagtcac ggtgcttaag actttgacaa acataaacat
      541 attacgaagg tttaaagagc cagaagcctt acctgctata gtattgagga acatcaagta
      601 ttcaaagtta gatatctccc gtctctgcca gcgctgagtc atgttggagg atttataaag
      661 ttgtcggggt gtggccagag agatcctcct
//
LOCUS       KCOD01000128             751 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 14316pyr ultra-conserved element locus
            uce-5478, sequence.
ACCESSION   KCOD01000128
VERSION     KCOD01000128.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 751)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 751)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..751
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14316pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>751
                     /note="ultra-conserved element locus uce-5478"
BASE COUNT          183 a          172 c          121 g          275 t
ORIGIN      
        1 aagtgctcct ctgtattcag ataaatcaca ttgcaaagaa ctgttgtcat aaatatgcac
       61 ctagtcatat aaaatcactt atattacttc tttatgtcag cagataaata ctgttgttac
      121 acaggtgtac ttgggagtgt agccgagtct gtcccaatgc catttcttga gaactcacct
      181 cagagcactt agggacagca agtcctgtct tttggcctgg tgctccaagt ctcttgcata
      241 tgcagctgct gtacttgatt tcttctcctg ctaacgattt tctttaatgt gacccatgtc
      301 ctgtgtcatt ttttctagtt catcatcacg ggagtaaaat gttacgttcg gaatcaaact
      361 cttcaattac cactcagcct actataggtt ggcaaacccc tctctttgtc tccttctcct
      421 cttcttctct tcatttcctt cccgactttt aactatatgc ttcacccatc atatttagct
      481 taacgtgttc ctacatgggc tggtgctttg caagctaatt ttttgacacg cttgaagagt
      541 gtttcaaaaa caattgtcat tcacactgac acagttaaat gctaacatgt cttgcattta
      601 ttcatgctga acattctctc atatgtgtgt ctgtatgtgt gtgtgcttag ccaccaatta
      661 cctcatcata gtttgggttt tatgttcatc attgcatgtt gccaaactac ataacttcat
      721 agttttgaat aaatatattt gctgctttcc t
//
LOCUS       KCOD01000129             843 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 14425pyr ultra-conserved element locus
            uce-6802, sequence.
ACCESSION   KCOD01000129
VERSION     KCOD01000129.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 843)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 843)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..843
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14425pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>843
                     /note="ultra-conserved element locus uce-6802"
BASE COUNT          247 a          173 c          205 g          218 t
ORIGIN      
        1 gtcgtaggct gtgtttttga aagcctcggt gcccacccca gattaaagca gcatgttgct
       61 ggaatactgg gcctccaatg aagatgcctt tcaacaacgc aaaaccacta atgagaaaac
      121 atagacagaa ggagagccag cccctgatgg cagggtttct cagctttgag tagcttccag
      181 ggccatagat ggcactggcc tgatggagga gcgggtcaga ggaaaatgaa ggcttttctc
      241 tcagtggctc tgatatttgt ctgcagttgg gacacaaaag gaaagaagga aagaggagag
      301 atccctgttg gccacatacc atacatgcag atagcatatt gcagttttcc aggctaggga
      361 gacctcctct tccaagtgtt ccagtaatta acctcacttt cttggctggt gttaatttgt
      421 tccaagtatt tgggctttag atctaaccat gggaatctca ttccctgcag aagccttgcc
      481 aactattact agacatttta ccacacacat gcaggccaaa aaaagcaagg ctaattacac
      541 tgttttttgc aaagtgaagt gtatttgtta taagttcaac gtctcctaat aaagagagga
      601 gcaggagaaa gcaaggcttt taatgcctgc cagtgggagg cagggaggaa cagggatttg
      661 ccttttggtg tgcggtacct gcaaaaatcc ccagtgagga tttaggagcc aaggtgtgac
      721 gatccacaac atgaaaccag acagtgctac caggattttc agctgtaaat aacctagttc
      781 aattatttta taccaatggg agttctctaa gttttaaata ggggaattat tcaaaccaga
      841 tgt
//
LOCUS       KCOD01000130             674 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 14533pyr ultra-conserved element locus
            uce-388, sequence.
ACCESSION   KCOD01000130
VERSION     KCOD01000130.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 674)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14533pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>674
                     /note="ultra-conserved element locus uce-388"
BASE COUNT          202 a          108 c          153 g          211 t
ORIGIN      
        1 acaactgcca tattggaatt aagtagaatt taccagttct tgtcagtcct tggaacagct
       61 cttataatga aggcgatata gctggagata acagtgaaaa gttataatac gcgggccttt
      121 gttcttttct ttggtgggga ctggaggaag caaatgcatg tttggcttag tgcagtccaa
      181 ttgtgccatg gtattaagac agtacatctt taaattttca tatgaaagta tgagctttgg
      241 tatgacagaa tatcaaagtg aaaattaatg tccgccactt gtatattgcc tagacgttac
      301 tttagagaga aaacaacagg agcgagacga agccatacat atgttaaatt cacatcagta
      361 ataaagatta agtagaagtt aatagcatcc cagtcatgct tgtggaggta atctcctttc
      421 tgaaaattca aaattagatt tggaggatcg aagcaaacag ggggtgagac tttggcgtaa
      481 tattttaatc aaattgtcat gaatgagtgg atacaattaa gaattctgtc agtcacagtg
      541 ctgagcccct tttgttagtc agctgttgtg agggatgcac tagggcatcg tgggtagaga
      601 ttaaacttga cctttcccag gatcttcatt tttgaccctc tggctaggct ttgcttgtca
      661 gatagctatt tttt
//
LOCUS       KCOD01000131             635 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 14642pyr ultra-conserved element locus
            uce-4653, sequence.
ACCESSION   KCOD01000131
VERSION     KCOD01000131.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 635)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 635)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..635
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14642pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>635
                     /note="ultra-conserved element locus uce-4653"
BASE COUNT          182 a          190 c           95 g          168 t
ORIGIN      
        1 tttattttag ggcagcctct ttacctgaca cactttcccc atcagaactg caaatggctc
       61 atatccatct ctgcccctca gcaaaacatg caaatgacca caaatcaact tccaactaat
      121 aaaatccgtc tggactcaac acatgtccct gtatcaccac aatggaagca gccacaatac
      181 cagaacagct ctataaataa tgacagctct gctttccctc tgcatctccc tgcatacaaa
      241 atcagaatga aaacaactgt cctctcctcg ccgcctctcc ctctttgcaa tacatacaat
      301 ataaggtgat aaggaaaatg cagggcttac acagatatca gaattcttca gacgtcctcc
      361 tttggctctt ttcagaagcc tgatccaggt ggccttcatt agccagacag ctcagttact
      421 gtccgcagct gcagcgcccg gcactgatct cataaaacat gtgcacactg agcactgcag
      481 aatcacagct cctttcctat ccatgctctg ctgtgagagc cttccttctc tttttcaagc
      541 ttccagcctc actgtttcca agtattctac tgcaattaaa ttctcaaatt ttctcatgcc
      601 agtagaggga aaaatccaca ccacaacttc aatga
//
LOCUS       KCOD01000132             878 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 14857pyr ultra-conserved element locus
            uce-708, sequence.
ACCESSION   KCOD01000132
VERSION     KCOD01000132.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 878)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 878)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..878
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14857pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>878
                     /note="ultra-conserved element locus uce-708"
BASE COUNT          265 a          164 c          161 g          288 t
ORIGIN      
        1 tcaggattac tggggactta aatcaacatt tttggccttt gtaaaggatc ttagctaaac
       61 atttggtgta gttaaactcc aactgatgcc atgacacaca gaaaaaagtg cagaactgat
      121 gcattgtgcc atctctggca gcatttgttc agcgtttgct gtgactgggg aggaagaaag
      181 atacggaatg ctcggattga ttttcaaatt acctcaatat tttgaaaaca ttttcacctg
      241 catgctgaga atgctaagaa taggcaggaa ggcaattgtg catttgcaca gcctccactg
      301 cattcattta taaattacct catcactgac tgaaattaac actgattctt acaggcaatt
      361 tctcaatttc caatgctaat tacatttttt ttacttttaa attctgtacc acctgttttg
      421 ggcaagacat cttaggcagc gcgaccgcat ttaatcacaa ttttaattaa ccgccctgta
      481 gatgtgaaaa agaagcaatt ataatgtaga tgaatgatga tttttctgca ttaaattgtt
      541 ttgtttccct ggtatgttga ttgtaacaca gcacacaaat acagtaactg tacaattttt
      601 ttctattgta atttagtaat tgtttttgga aaaccagttt gggaatgagt gacttcatct
      661 gtttacaaat tgattgatac tgttaactca ctgattgctg cagcatacat tttgtattgc
      721 acagcctagc ataaaatata attaggcatg cacagacttt gcagcaccat tttggaatct
      781 gaaaatcaac tgtaaccgaa gtgtgttttc cttgagcatc ctcgtatcag ccggggctga
      841 tgatacgata atcaacaaac aatgggcttt tcccatcc
//
LOCUS       KCOD01000133             582 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 14967pyr ultra-conserved element locus
            uce-4763, sequence.
ACCESSION   KCOD01000133
VERSION     KCOD01000133.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 582)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14967pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>582
                     /note="ultra-conserved element locus uce-4763"
BASE COUNT          213 a           97 c           98 g          174 t
ORIGIN      
        1 gttattttgc aactggatca cttacagctt agttaggcaa ggatccaagc ctcctattac
       61 tcagcaagca aagtacttgt cttcgtagac atcaaaataa caaaactatc aagttcaagc
      121 agacagtaat atctcacaca gactaagtta aagccttaaa attgattata atgcctctgt
      181 gatagatata tatgtatgta tataaaaata atacaataat ttgcaagttt gtcaagcaat
      241 gaaaggtagt atattttgac acactaatcc agtaagtaat cagttttcta ataaacaatc
      301 agcagtacac taatgtgtca tcagcacttc aggagctctg gagagtggat gatctgcaca
      361 cagacgttaa tgaatacccc aaaaatcatt aagtaatcaa tacttctgag ttattttcat
      421 tgagctgata ggtctgatac attaaagctg acattttaca tttgtcaaga tcacagtgca
      481 gtttttaaca gtggcatagg atgctaaaaa tattccatga aagacaatca aggaaataca
      541 acttaaaagt gttgacattt tagattggta tggtaacctg ga
//
LOCUS       KCOD01000134             586 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 15078pyr ultra-conserved element locus
            uce-3061, sequence.
ACCESSION   KCOD01000134
VERSION     KCOD01000134.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 586)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 586)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..586
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15078pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>586
                     /note="ultra-conserved element locus uce-3061"
BASE COUNT          172 a          115 c          122 g          177 t
ORIGIN      
        1 gacgttaaca agatgactaa cacttccttt agtggccagc tgctaacctt gtgccagcca
       61 agcccaatac tcaaaatagc cttatgggtt atccagagaa atggcaggtt gcatcttcac
      121 cctggaagga gctcagagta aaagtatcga gagttgccca agtgggcttg agcctatctt
      181 actctcctgt attttgttct cttccaccag ctgatctaca tgatggctac tacatataac
      241 tatgctgttt tgaagtttaa gagtcgggaa gattgctgca ctaaattcta aattgtataa
      301 gcccagtaaa aagctgcatt gcgtagcttg aaataccact gacaccctag actaaaagtc
      361 tagctttctg aattttgtta cagtaattgt aaatagcttc agtaagcatc gtttagctta
      421 tcagattaat gaaatgatat gaactatgat gtggatgaga tctggctaca tgttgagagg
      481 attcagttac tgtagggctt ctgaaaaggg gttttcattt caagtctccg cttgatttct
      541 aacagtcatc tcaaacaaat actggaacag ttcagggtca gatgta
//
LOCUS       KCOD01000135             228 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 15185pyr ultra-conserved element locus
            uce-4410, sequence.
ACCESSION   KCOD01000135
VERSION     KCOD01000135.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 228)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 228)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..228
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15185pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>228
                     /note="ultra-conserved element locus uce-4410"
BASE COUNT           77 a           38 c           45 g           68 t
ORIGIN      
        1 tgaacagtat actttggtaa aatacacaca catgcacata catatacaca gagaaaatat
       61 aatcataagc attttcactg taatagtaac ctttccatag actttccaac ttgtctggtc
      121 ttccttgaag gtcgattggg ttttcaactc tgttatctgc gaggtgtttg atggagtggt
      181 ccagataaca gaggagagag caaaggaaaa agaatttttt gaagatca
//
LOCUS       KCOD01000136             753 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 15293pyr ultra-conserved element locus
            uce-2476, sequence.
ACCESSION   KCOD01000136
VERSION     KCOD01000136.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 753)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 753)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15293pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>753
                     /note="ultra-conserved element locus uce-2476"
BASE COUNT          235 a          159 c          130 g          229 t
ORIGIN      
        1 taaaggaaca gcgtttggaa atcatgtggg tattaaacta ttggaataac aatgttgttt
       61 caatacaagc tgccctaaga aaatgggaag taagagtttt accttccact tctgacccca
      121 atatttcttc atcttcattg aacgtgttta acaacaatgc tgagaatcag attgttgagc
      181 aaagctattc agtggtcaaa tgtatgttgt cagagagttc atgaaaaagt cattagctct
      241 cctcccctcc tctttcactg tcaggcagaa tcatgtcata aatacagcca cttgtctagc
      301 aggatatcaa tctatccagg tatcacccac ttcctgtctc tggccatatg tttctgttat
      361 ttatgtcaag aaaatagcat ttacacaacc gctgctagtt gtttacagaa gtttaactcc
      421 tgtgatatag tcccgcttgt gttgcatgct tttagcccat agataataca tgagattgta
      481 cattttaaaa tatgctacca catgcatgat agaataaaca cagacctgaa ctgacagcac
      541 catctgccaa acacagttga tgtcagggga atggtctctg cacaatattc cactactccc
      601 ccatgagata aggctactca tggtataact acactaaatt agacttgttc atttagtact
      661 caaattgtaa aaaatctcag aagcagaagg gactcggtcc tcctaagaaa agtgcaaatt
      721 gaacaattct cacataggtt cttcttgttc tta
//
LOCUS       KCOD01000137             789 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 15402pyr ultra-conserved element locus
            uce-1804, sequence.
ACCESSION   KCOD01000137
VERSION     KCOD01000137.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 789)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 789)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..789
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15402pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>789
                     /note="ultra-conserved element locus uce-1804"
BASE COUNT          220 a          161 c          165 g          243 t
ORIGIN      
        1 gtgatgctct ccagccacac ctgagctgga gcagctccaa cccaggcccc accaggcaca
       61 gggtgccctt gtcctctgcc accaggcacg ttcccagagc cgcatattta tttaatgtta
      121 atgcctcgtt gtcttgacat tcatcgtgtg ctaagctggg aaagtaatta aagttaattt
      181 ctgcttgggg gaggatgaga aaagtcctca ctgtaaattc ttattcatat ttctttcctg
      241 ttttgtgatt ctcaatcgga gttttctaat aacagatcat ttctttttgt ctaactttaa
      301 tctggccctg cttgacaagc accatccttt tcattgaagg gtaagaccac ttaaagaaag
      361 gccaataagc ccttgcactg ctcagctgac tggggtgatt tgtcaccctg tgcagtggtg
      421 gtcacaccaa tggatttatc tcaaggtaaa tggagatgct gagacctggg acctggagct
      481 ttgattaagg cccccttttt gtagtgttga tagatgttgc ttgtgtttat ctatttgaaa
      541 tgccactaaa tctgtgaata caatggaaaa agagagtagt ttgcagctga aaacatatta
      601 gtgatttatg tttcactaag aagcacaata gagagacaga ggctattaag aggagctatt
      661 ttcatgagaa atagttctgc tttaaaacat tatcaaccac accttgataa agacctacat
      721 gcatgcataa tagtgtttac tttagttgag tgcaatatac atttggaatg cacagcccca
      781 aattattaa
//
LOCUS       KCOD01000138             293 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 15508pyr ultra-conserved element locus
            uce-2678, sequence.
ACCESSION   KCOD01000138
VERSION     KCOD01000138.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 293)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 293)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..293
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15508pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>293
                     /note="ultra-conserved element locus uce-2678"
BASE COUNT           98 a           33 c           66 g           96 t
ORIGIN      
        1 accgcaacat ttttctaatg tgcattaaga atgttggaga gctcactgaa gcatatactt
       61 tgagctttca ggagcaatct gtagtcaggc attttaaatg aaaattgatt tgtgatttac
      121 atggtcagtg gaaagaaaat taacttatgg aaggttgtaa tgaaatatta gacaagtaaa
      181 aaagtagatg gtgatctagt ggaactaaaa gtcccatctg gaagaattct gtgacatttt
      241 tttctgcatg agttgtaatg ttagtggtaa ttttatggga ctgaactgaa atg
//
LOCUS       KCOD01000139             524 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 15616pyr ultra-conserved element locus
            uce-5788, sequence.
ACCESSION   KCOD01000139
VERSION     KCOD01000139.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 524)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 524)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..524
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15616pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>524
                     /note="ultra-conserved element locus uce-5788"
BASE COUNT          184 a           72 c           91 g          177 t
ORIGIN      
        1 cttaatatcc tcaatattct gtaactcatt tttggctcaa tacataaacc tgattaagtt
       61 atcttgacag aaatattttt atgatagcaa acaaacttag cagtaagcat ttgacagcat
      121 tatttattag tatgataaat gaattgtgag atgtgtgatt gtgtgatgat gcattcattt
      181 agttgttcct ttttttcttt tactaatctc tgtcatgttg gatttataaa tggaactgag
      241 tgacctttga aactgtgatg gaaatgaaga gataaacaca acttgaaagg acaaaccaat
      301 taatataaat gtgttacata taaagaactg atttcaatca attgctatct gtgtaaacct
      361 ttgggcactt agctgaatga aatagagcaa acagattatg tgacataggg acaaaacatt
      421 cttttattat gtagttggaa tatcatccac aacaggaaga agaagtgtat gctacattgt
      481 ggtacaaagt ccactgagaa gttacagttc tctgataatc aaaa
//
LOCUS       KCOD01000140             551 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 15717pyr ultra-conserved element locus
            uce-5008, sequence.
ACCESSION   KCOD01000140
VERSION     KCOD01000140.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 551)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 551)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..551
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15717pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>551
                     /note="ultra-conserved element locus uce-5008"
BASE COUNT          149 a          162 c          110 g          130 t
ORIGIN      
        1 ctaggagtac acagcaaggt aaacctctgt gccaagggtt ttctcccttt gtgcttgctc
       61 ctggggagcc tatctagcag agcaaagtcc actgccctcc ctcttgtcac ccttcctttc
      121 cccaccagca gcccccagcc cgacagagag accaggctgg atggagagcc tttctctcca
      181 gtgtgccgca ctatgacaga tgattgactc gaaacaatat ctaaggcgat caggataaag
      241 taccgaccat ttcaaggctc agcagaattc aaattctaat tagacttctc accacattcc
      301 aaataaaaat tgttcccctg atatcctttt tgcctatcag gtgtctctcc ctgatcgctg
      361 gaacaaaacg cataaagaaa gtgattaaag ccataacaaa ggcataaaat tgaaattatc
      421 gctggtatca catctgggag cagagtgtgt caccacactg cccccctccc ctcggagcgc
      481 tgcctcccca aatagacaca cacatccccc catagttctt gcctcaaatg tgactgatgg
      541 gctgggggac a
//
LOCUS       KCOD01000141             501 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 15828pyr ultra-conserved element locus
            uce-2754, sequence.
ACCESSION   KCOD01000141
VERSION     KCOD01000141.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 501)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 501)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..501
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15828pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>501
                     /note="ultra-conserved element locus uce-2754"
BASE COUNT          182 a           75 c           84 g          160 t
ORIGIN      
        1 ttaaaataca tgtaatttaa tacagtagaa aagtaaataa aaaataaatc aaaagagcag
       61 tataagacag cattcaactc tttgcctctt gaaaatttaa atgaatactc cttgagagca
      121 aactacaaaa tgctaacctt gaagtgttga gtggcagaaa gaattatggg ttattgtact
      181 gtcaaaatgc cagacagctg tatgttgagt taccgtgtta tttagacaat cagaaacttg
      241 gaagctaatg tgacatattt ttttcagtgt gaaagctcct gacatgcgtc atgataattt
      301 ctaaagggac aaaatgttat ataaaaaaca tagtgccttt atgaaactgc ctaacaggta
      361 caacactgtt tcaagtagaa ttcacgctga atactacaga taagtaggat tgattcagga
      421 cattactaaa attgctatta catcattctg ttgttcattt gttctataca ttttatcatt
      481 gtcatacttg gagatacttt c
//
LOCUS       KCOD01000142             496 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 15938pyr ultra-conserved element locus
            uce-3130, sequence.
ACCESSION   KCOD01000142
VERSION     KCOD01000142.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 496)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 496)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..496
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15938pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>496
                     /note="ultra-conserved element locus uce-3130"
BASE COUNT          145 a          104 c          108 g          139 t
ORIGIN      
        1 ctgatgttgc tgagttgcca gaggccagga agaagtttcc tctcttctta ttttccatgg
       61 tgctgtattc cccagaggct tcttgtcacc atcaccaaaa agaggagggg agaggacagg
      121 aagggtgagg aaacaagaca tacctgcagc agtccttgct gtatattccc tgtgtcccac
      181 cgacagtgtc atgcagaagg aaaattgttc tatcagtgac tatgttagat tcatgacccc
      241 accacaacct tgaattggcc tttagttgtc gctgatggga actgaagaac agctcctgtc
      301 gacatgattg ctgctctcca atgaatcaga acacacaggg cacagagcag cacattaaac
      361 tagcaacaga aatatatcac tgtactttta tatagatgta ttgcttttgc ccaggcatat
      421 aaatgattgg gctatccact tatttttttt ccaaggacta taaattaaaa ataagctaag
      481 ggtttggaaa ttatgt
//
LOCUS       KCOD01000143             431 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 16041pyr ultra-conserved element locus
            uce-2303, sequence.
ACCESSION   KCOD01000143
VERSION     KCOD01000143.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 431)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 431)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16041pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>431
                     /note="ultra-conserved element locus uce-2303"
BASE COUNT          130 a           90 c           78 g          133 t
ORIGIN      
        1 gcagatgaaa agagagatta ttccatactc aaaatcctgt gatcatataa atctgtccca
       61 aagctccagg aaccttcctg cgttttccac atcctggttt ggtgcaagga acacgtccca
      121 ttccttcatg tggttcatag tgcttttaat caaaattagt acaaaaaacc caactcactg
      181 gcaaagtaga aagaagggcc tgtctccttg ctgtatggta ttttgggaca tgctgaattt
      241 gggaaataga aaggtaaatt agccttttgc cacgtgcata cttcccatct tctggaaagg
      301 tcagtgtctt tttttgaaga ctctagaacc atgcagattt ttatttactc agctgctttg
      361 ttttacaaat gcaagtctca agaactgtga cacttcttaa ttaacacaaa aagaaactca
      421 attcatggtc t
//
LOCUS       KCOD01000144             502 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 16145pyr ultra-conserved element locus
            uce-4694, sequence.
ACCESSION   KCOD01000144
VERSION     KCOD01000144.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 502)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 502)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..502
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16145pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>502
                     /note="ultra-conserved element locus uce-4694"
BASE COUNT          148 a           88 c          109 g          157 t
ORIGIN      
        1 tgacatttag attttgagag attaaaaaaa tgggaaacat tgaaaggatg agctaattaa
       61 tgttttctca gcctatccaa gatagcctgt tgtgtttaat ttatgcctgt tgttttatca
      121 tctattactg acttctaggc ttctgcttgc actggctgta acaagcattt catttcataa
      181 aaactggttt cggtttcagt tactttttta ctgtacccga aaaagggaat gggatttgca
      241 aatgataaat ggggaagttg actagctaac taataaagat ttgtcttaat caagtatgat
      301 ttgtcagaac aggagcgcac tggggtcagg gcacacgcaa tgaataatac agcattcact
      361 ggagagaagg accaggcaaa aggcctcata aatatgccgc gattacccac tgctaattcg
      421 tattcaaatg cactgaagcc agctccgagg ttgctgagct gttcacctgc tttgtgggct
      481 ttaccgtgtt ttagaaagtt ta
//
LOCUS       KCOD01000145             823 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 16255pyr ultra-conserved element locus
            uce-1339, sequence.
ACCESSION   KCOD01000145
VERSION     KCOD01000145.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 823)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 823)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..823
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16255pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>823
                     /note="ultra-conserved element locus uce-1339"
BASE COUNT          231 a          139 c          163 g          290 t
ORIGIN      
        1 gtatggctgt ctcagcacaa tactcaacat aactgcagaa ctgatgtggc tcaggcatcc
       61 tggttttaat tccttgagga tctggcaatt ggctcatgtg aagggtcacc atttgaggtc
      121 ctgccttact aattatgtgc tgcccaacaa ctaaatttgt aattgttttt ctttagtttg
      181 agcagggtct gaatttttgt ttctgttttc ttttttgcca gcagacaagc ttgggtctgt
      241 aaagacaagc gagtacactg acaaaagttt accacttagt tttccaaaat gtaaaaacga
      301 aaaaagacaa aaaattagac aacaaaattt gcattgttca ttgtagcact attggtaata
      361 aaaaatgttt gtgcattttt atgtgaagat ccttctcgta tttcatttgg aaagatgagc
      421 aaggtttgct tccttcattt tacttcccct tctgtttttg aaaggcagtt ttcgccaagc
      481 ttaatgcaag aatatctgac tgtttagaag aaagatattg ccacagtctc tggttagttt
      541 ccagagttgt gtattactga gcttcatctt tccagaatga gcaaaacact gtccagtctt
      601 tgttacgatt ttgtaataaa tgtgtacatt ttttttaaat ttttggacat cacatgaata
      661 aaggtatgta tgtacgaatg tgtatatatt atatatatga catctatttt ggaaaatgtt
      721 tgccctgctg tacctcattt ttaggaggtg tgcatggatg caatatatga aaacgggaca
      781 ttctggaact gctggtcagg ggactacttt gtcgccctgt gca
//
LOCUS       KCOD01000146             584 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 16364pyr ultra-conserved element locus
            uce-6870, sequence.
ACCESSION   KCOD01000146
VERSION     KCOD01000146.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 584)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16364pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>584
                     /note="ultra-conserved element locus uce-6870"
BASE COUNT          183 a           96 c          107 g          198 t
ORIGIN      
        1 ccatgttgct aatacagtaa agaattggaa ctttaatgtt tattattgtc ttatgttcat
       61 attaatctgg tttatgcata gtatccaaca aagtttaata agccagtaaa gaagaaggat
      121 ggataattag tttaagcagg taaatgctaa ttaggaaact cctgaaaggc atccattata
      181 cactagctta aaacaaattt tacagccctg gttagtggtg taatccaaat tctgtcaagg
      241 caactgcatt ttctgtaatt gagatgtgta tgtttgcttt gcataacaga tggctctgta
      301 tgcttagact gatagctagg aaaataataa ttgcattatt ctggccaaaa gaatattagc
      361 tcttgggttt tggccatttc agtcagtcct cctgccagca cagcatatgc acatatatgg
      421 attggatttt caaggaaatt gatgcatctg gaatagtgtg gccatctgaa atatcatctg
      481 ttcaagaaaa atttggcttt aaccctatgt tagtctcttg ttaaaagcat tttctgccac
      541 tgcctttcaa actatagagt tgataaatct ctacttactc tgaa
//
LOCUS       KCOD01000147             476 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 16467pyr ultra-conserved element locus
            uce-4512, sequence.
ACCESSION   KCOD01000147
VERSION     KCOD01000147.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 476)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 476)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..476
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16467pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>476
                     /note="ultra-conserved element locus uce-4512"
BASE COUNT          133 a          100 c           90 g          153 t
ORIGIN      
        1 atttgatgct actcctgata tcctttttct aggataatcc agcattcatt ggagtgctta
       61 tcacaacaag tagcagttgc agtatgctgc atcatttggc acactcagga aaatggaatg
      121 ttgaagaagc actaatctga ttctcctata ccagtactta cttgccttac ttagtagaac
      181 gggaaaagat aatggttgct gtaaatctga tctgaaaact gcatttcatt tttctgcttt
      241 caagctgcga gctatctgta agaaggtatt acttaatgct ttttacctta gcatatagct
      301 tacagtgctg taagcataca tagcatatag cacagtcacg cttgtataac aggagctcta
      361 caaacccact gaaaatgcat tattcctagt ttaggctgcc cacctctggt ttggctgatt
      421 tgtaaacaca aatctgcccc gatttttggc cgcgtttcct ttctgtggca aaagga
//
LOCUS       KCOD01000148             749 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 16578pyr ultra-conserved element locus
            uce-1157, sequence.
ACCESSION   KCOD01000148
VERSION     KCOD01000148.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 749)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 749)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..749
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16578pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>749
                     /note="ultra-conserved element locus uce-1157"
BASE COUNT          209 a          131 c          151 g          258 t
ORIGIN      
        1 tttttcttga atttatttag tacagtttca aattgaaaat gcagggtttg ctgcctggtg
       61 ggggatgtgg atgctaagtc cttagactga actatattgt gagttaagtg atctctgttt
      121 atcccactta caagtatcag tttgctcttt ttaaataact cctggcaaag aaaaggaaga
      181 atataccatg tattttattg cttaattgtt tatagtaact gtatagattg gctacagagt
      241 cctagtaaaa tctaggagct ttggtgtggc agaatttctc agtttgaagg gactccatct
      301 ttgacagttc tcctaaggta ggttattttg gagaaaacat atgtttccat tttctctccc
      361 tcagcttccc ttttagtccc caggctccac cggggtcaca gcaacattaa ggcttttgtc
      421 actgtgatta atagctcttt agatcatctt taattcactc actaatgact gagggtcttt
      481 ctgctctcca agtaatcgcg tgatgtatga gccgatagta caccttgtgg cagaggtgaa
      541 aatcattcag gcaatgcaaa tattgtcacg gggacaaatg ttttccctgt taataaaaat
      601 taatgaattc tacccaggag ctagttaaag aagctctggt gatagagatc caaacaccaa
      661 gttcttgttg cttggaacta tgaattcagt ctttctagat atgtgaggat aattattatt
      721 agtatttctg catctacata atagatgag
//
LOCUS       KCOD01000149             809 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 16690pyr ultra-conserved element locus
            uce-2367, sequence.
ACCESSION   KCOD01000149
VERSION     KCOD01000149.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 809)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 809)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..809
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16690pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>809
                     /note="ultra-conserved element locus uce-2367"
BASE COUNT          266 a          145 c          145 g          253 t
ORIGIN      
        1 tgctactaat attgatttgt tatgattaat aaatatgatt ttatgcatta cccgtgtact
       61 ttctctatga tagtagagca gaagaaaatt gcctcttgct ctttattttt cattgactat
      121 ttttagtcaa tgataaataa agaactttaa cagcagtctg attacagaaa agacaggaca
      181 aaacagaaac gtagcagtaa tgactaacca cgcagcaagc tacacacgcc attttaacat
      241 ttgtaatggt gctaatttcc tgaaaatatg cttccacatg agctctcaaa agacataaaa
      301 gcttggcatg taaagtaaat tgtttgtcac ttgctgacga cctgccatat ttattgtcag
      361 gagaaatgga cattagttgg aaaagcagtt gttaaaggcc aaacaatttt taaagatggc
      421 aaagatgtgc aagggctttc ctttttctaa caatgagcca ccccttcaga catcaaaaga
      481 caagataata agacacttca agcacaattc aagattatat tcaacatcta aaggctcatc
      541 tcctgtcagt ttgcatttac tctcccaggg atgtgatgct tctatcatca ttctgtcaag
      601 aggagtctgg cagaaacgat gagggcccct catttcacac acttttttat gaaatagccc
      661 atgctcattc tcattcagcc aaaatggagg gataatttga agaaggtcat gcacaagtac
      721 aaaaatcttg tgctgatttg tgtgattaga aggcattaaa attgcacgtt tatgttagtt
      781 ctgagatgtt ttgtcagttt atttagtaa
//
LOCUS       KCOD01000150             569 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 16798pyr ultra-conserved element locus
            uce-3246, sequence.
ACCESSION   KCOD01000150
VERSION     KCOD01000150.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 569)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 569)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..569
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16798pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>569
                     /note="ultra-conserved element locus uce-3246"
BASE COUNT          188 a           89 c           82 g          210 t
ORIGIN      
        1 agtctttaaa tgtctttctg attgctggcc tctattaaaa acttcttaaa ataatagata
       61 ggtttaattc ctcaagccaa agaaaaattg tatcatctta agtattttcc atatttatta
      121 tattgatgag atttggctac tgagaaaatc tcttgtattg caagttttaa atgtaccagg
      181 ctaaggttta cttaattaga acctccaggc aataaaggag cccaaattct gtgaatctta
      241 atatgctaaa taatgcaaag cttcaactct tcaagcatga gacacacatc tggcagctta
      301 acatttaaat tacaccactt cagtagtaat tttcatgaag aaaagaatgg gaaatgtatt
      361 acaactaaat ttaatttctt tttagatttt tcatcctgtc taattgcagg catttccgct
      421 tttatttatt tatttccata cagatgtact ttttattgat ctttaatttg agcagcttct
      481 tactgttaca gccattgaag aattacattg tgtttttact tagcaaaaat tgttcagaga
      541 aatctatgag gaattaaagt aatgagctc
//
LOCUS       KCOD01000151             878 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 16912pyr ultra-conserved element locus
            uce-865, sequence.
ACCESSION   KCOD01000151
VERSION     KCOD01000151.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 878)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 878)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..878
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16912pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>878
                     /note="ultra-conserved element locus uce-865"
BASE COUNT          244 a          174 c          170 g          290 t
ORIGIN      
        1 agattgcatg tcagtgcagg tcacagttac aatgcagcag atctcagaaa ggtgtaaggt
       61 ctgataagaa gcgagtcttc tctactcgct gtgtcaaatc accaatagtt tatctaaagg
      121 tctgtgccct tgaagcacaa aaatatattg tttttaagca taactggaaa tacctttcta
      181 tcaagaaaag ttgtctggct atgtgacttt acatggtgta ttttttccag tcccagagat
      241 aattagcacc agggcggttt gccaagctaa agctgagaca atatccttca cagcctttct
      301 gggcatttgt gtccttttcc aatttttatg ctgctgtcac tggactctgg catttcttac
      361 ccaattcatt tgctttctct ggtaatcata tgcaatgaag atatgcatgg ccaacattta
      421 aacaggctgc agatcaatta gtggtcttaa gtttatctga tttttatcaa agaagacaga
      481 gctttgggtc gattgtcaga gcctgtgtca agttgacctt ttcagagacg tctacattgc
      541 cagtcccttg ggcaacttgt tgtcccctgt tagtctctga atggcagaag tctgttctgc
      601 tcaagcacaa agtatacaca gatgtctata ttacattctt ataggtttga cagcaactgc
      661 atgttgtatc tataaactgt cctttagcag tgacacttcc tcaatgatga taagctaatt
      721 tatgcaacta aatctccttt gtgcagaaat gaaagctaat tgagtcatta caaagtaatt
      781 caggaaggaa taccttgtat aaattggctt actttataaa tccttctcaa gtggttttca
      841 tgcatcctaa atggtgctta agcagttttg ctgccatc
//
LOCUS       KCOD01000152             323 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 17020pyr ultra-conserved element locus
            uce-204, sequence.
ACCESSION   KCOD01000152
VERSION     KCOD01000152.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 323)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 323)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..323
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17020pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>323
                     /note="ultra-conserved element locus uce-204"
BASE COUNT           98 a           83 c           54 g           88 t
ORIGIN      
        1 tcacaggcag aattgcttcc actgcaattc ctcagcttgg gtagggcagt cacattattc
       61 ttgacttctc tgaggctttt tccacacctg tccttgaaga gcacctcatc tagtgtctgc
      121 gaggcttcag cttcttgttt gacatccctt atttacaaag caaacaaaat gttcctttta
      181 acacacatca tgcaaagttt attaatgaag aaaacaatcc cagggggtca acccagggga
      241 cccttgaaac ctgccagcaa aaactcttca aacgttcaac atgtcagatc ctccaaaacg
      301 atatttcaca caatgaagta aaa
//
LOCUS       KCOD01000153             647 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 17124pyr ultra-conserved element locus
            uce-280, sequence.
ACCESSION   KCOD01000153
VERSION     KCOD01000153.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 647)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 647)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..647
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17124pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>647
                     /note="ultra-conserved element locus uce-280"
BASE COUNT          214 a          108 c          100 g          225 t
ORIGIN      
        1 aaatgtaaag gacagtcatt ttagaaaaca ataaattcat gtagcatgca ttaagtgcac
       61 gtatttcata agacctaggt taatacaact ggcatctagt ttaattaatc cttgttagtg
      121 taacgactaa tatccctccc tagcatgttt cctttaaaca ttagtatgtt aattaaatgt
      181 tgttttttta agggcctttg tacttcaata tggcattata tcatctaaaa ctattccaaa
      241 caactacctt atagagatgt ttccttacaa tatctggtct cttgcagaaa ttctgaagcc
      301 ttttaaaaag ctgttcaggt gtagaataca gatattcagc tgcaggaaaa acagatacat
      361 ttttaatgaa acaaaaacct caaagcacac actcgatatt agtcacttta ctaattaaaa
      421 atgcatattg ctctgtgccg cctcgtgttt tacattattt aagcatgatt ttataaggtt
      481 acctcagctc acaaggatgt ttaatgctaa ataagactgt gtagttgtgc tgtttagaca
      541 tctcctttgg gtgattaaaa tacattattc taatgtaaca caatgcatat gtgatacatt
      601 tagtgatgag atttttcaaa gaactggtac tacattagtg tgtatcc
//
LOCUS       KCOD01000154             509 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 17227pyr ultra-conserved element locus
            uce-7482, sequence.
ACCESSION   KCOD01000154
VERSION     KCOD01000154.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 509)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 509)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..509
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17227pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>509
                     /note="ultra-conserved element locus uce-7482"
BASE COUNT          117 a          155 c          142 g           95 t
ORIGIN      
        1 agagctcagc tccttgcagg aagaggggac gatgcccagg ggacatcctg gcagcaggga
       61 tgtcccgtgg cccagcagga aaggcagaaa agagcaggat ccatcctttc ccgcggcagg
      121 agtggcccag aggggagccg gagcccccag cattcccctc cctgcccctc attcccagct
      181 cattaaggct ctcccattat tctgacattt tgtgcgcgtc acgtagcggg aagaagtaat
      241 ttacttagaa gaaattaaaa gttcatttta attgagcgca cactgcagta tgcaaatgcg
      301 ggcgcattat gtacactgat gcggagacaa aggctgtaat caactgttaa ccctttccga
      361 gccagccccg cgctcctctg caacgccggc accgctccgg ccactccgga gacacacccc
      421 catttgggat gtgccccttg cccgcagctc cgcgctcctg gagcaggggg caggataaac
      481 gctcggtgcg ggactcagac agggatgcc
//
LOCUS       KCOD01000155             572 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 17337pyr ultra-conserved element locus
            uce-6083, sequence.
ACCESSION   KCOD01000155
VERSION     KCOD01000155.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 572)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 572)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..572
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17337pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>572
                     /note="ultra-conserved element locus uce-6083"
BASE COUNT          172 a          113 c          116 g          171 t
ORIGIN      
        1 aaggaaagtt ccttaaacag tgttcgctgc ttataattgt tggacattaa agaagcaatg
       61 tattggtaag accatttacc cacatcgcat cccaatgaca gatgcccctc cttccacctg
      121 cattgctcaa cgaatttctt ctcaagaggg gaaatgaatt ctcaatagca acatgcctag
      181 taattaaccg cactgtaatt ctgatgtgca atgctgtcac ccaccatcag gtgggagtgg
      241 aaaaggcact gcattttgtt gatggttgaa catttgtttt cctcatcatt ttgacaccag
      301 aggtaattgc cattcctgaa atattctcgt gctactatta caaagcaact gttagggaca
      361 aactaattat gaagaatctc gttatgacag attaataggc caacagaggg gatttaggca
      421 actggatagt aaaatctgac agctcccata taacttctag aaacacatgc ttctctgtaa
      481 gccaacagat tttttcttag aggtgggggg gactagagta tagaatgggt ttccaagctt
      541 gtttttattg agctttttat gtgccaaaat ga
//
LOCUS       KCOD01000156             466 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 17436pyr ultra-conserved element locus
            uce-2255, sequence.
ACCESSION   KCOD01000156
VERSION     KCOD01000156.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 466)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 466)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..466
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17436pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>466
                     /note="ultra-conserved element locus uce-2255"
BASE COUNT          143 a          108 c           94 g          121 t
ORIGIN      
        1 agacatcccc actggctgca tacgttccac ttatgccaca aaaatttgta acatctggca
       61 ttttgccaga tttctacagg gcattagtaa caaactggtg aagctcatta gagagagaaa
      121 cctataacca ttaaaagtcc attaagcagc atgtcatttt gtaaagctaa atagcccaca
      181 gtaatcaaaa gcatatgaac cccagctggg ttacccagca aattgtttca atttagggag
      241 aattcatcaa gaaagattgt tcctaggatt gggttgactc cttcggttgc tggctccatg
      301 tcccattatg aattacggtg attgatgcac cttgcagaca aaggtgaaga gtgaccagaa
      361 tagccggaac atctgctcaa aggcagcgct aatgcgaacc tctgcaggaa gttgtcactt
      421 atgcccacta ctgccagcca gctacaaagc aacttctttg ccattt
//
LOCUS       KCOD01000157             747 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 17547pyr ultra-conserved element locus
            uce-2896, sequence.
ACCESSION   KCOD01000157
VERSION     KCOD01000157.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 747)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 747)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..747
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17547pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>747
                     /note="ultra-conserved element locus uce-2896"
BASE COUNT          160 a          207 c          180 g          200 t
ORIGIN      
        1 ggggcctcta aaaagagacc ctcttttcct gaggtccgag cctccaagag ggagaatcaa
       61 actgctgggt ctctggttcc tggtaaagag atcccaacag gagttgctaa ggagagtcca
      121 gtggattatc cagtctcaag gacagattgc caggatgagc caggggtcac tagtctaaaa
      181 ctgagggagg tgtcagaggg ccagccccta aggtctcctg agagcacact gcccaggggc
      241 agggagcgga tcaccggcat cgcctgtgtg ctagacagcc aacctggact ttgcccacta
      301 gaccccatca ggccgaggtc tcctacatct ataactgcct cggcacaggt ctcaggtgtg
      361 catggatacc catctcttat cttccccctt ctgtctcctg tctttgtgaa ccgcctcacg
      421 atcccatcac atttctttac gtccagcttc tggcctgtct cgtcctgtct gcacctgtct
      481 cgttccataa accatcccct caatggtgag acacttcttc aatctttttc tctgtctttt
      541 ttccatttcc tctgggtctt atgtctgaca gtccaatgtt ttgtagacct cggcatggtt
      601 gtgtttttag tgatttaggg ggtcaaacct cattgctaaa agctgacatg ctgtgtaggt
      661 cacacactcc tctcagagca tgtttccagc aaatgaaggt gcaggccaac atgtggtacc
      721 aggcagctcg tccagaaggg tttgcat
//
LOCUS       KCOD01000158             660 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 17657pyr ultra-conserved element locus
            uce-8011, sequence.
ACCESSION   KCOD01000158
VERSION     KCOD01000158.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 660)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 660)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17657pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>660
                     /note="ultra-conserved element locus uce-8011"
BASE COUNT          206 a          138 c          124 g          192 t
ORIGIN      
        1 agaaagtact ggttaagtac ttcatacaca cctaatgttc tgtgttgtga acaaggtgga
       61 aagaagacac ttgcacttaa atcttgaagc atcccgtcac gatgaaccca gagaaactaa
      121 tttctgccat cagaaaagta ctccaccaga acaccaaata attatatgtg ctgctgaaaa
      181 ggaaacagca agcccagttc tggctgtatg tagtctctcg aggtacaata atataaacct
      241 gatcaattgc aattaaaatc tgaacagagg cttagaactt gaagtcttgg tgcattagtt
      301 cttgccaaaa gcagatgtga ttgtgagctg gaagcaattt ctcctggtaa tttgtgatga
      361 cactgggtag agcagcccca gagtccccaa agacaaactc atcagaggct ctaatgtatg
      421 catgacacat gaggtggctc ttttagagct caattaattg ggctgaacat taagacagca
      481 agttcaggac tttttttttc ccctccagag ttgtttttcc tctttttaca agcagttttt
      541 tcccttacct tctgcaagcc atgtctcctg taattggctc agatcttgaa agagttctgc
      601 aaaaataaaa gactcacatc tttaatctca tcataaaata tgttcttttc cctaagaaca
//
LOCUS       KCOD01000159             585 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 17760pyr ultra-conserved element locus
            uce-2596, sequence.
ACCESSION   KCOD01000159
VERSION     KCOD01000159.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 585)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 585)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..585
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17760pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>585
                     /note="ultra-conserved element locus uce-2596"
BASE COUNT          187 a          136 c          148 g          114 t
ORIGIN      
        1 attctttgag tctgtgtata gcctgcaaac tctcaaaatc cccatggcta atgccattag
       61 gaagaacaac acattatcct ctgttctgtc agggtgatcc acacattttg aagaaaagtg
      121 cctacagcgg tagagtggga gagaagggga aaggaaggga aacaagaact gaatccaagg
      181 tggaggcaag cggcagtaca acagacagct ggtgtttggg tggtggtaaa tcaccctgaa
      241 atgagcctct tccctcagct caatgaggcc taaacaacaa aggaaggcac agcttgcagc
      301 cggacagcct gctagccaac cacagacaca catgacagct tcattcagga gcccggagtc
      361 aatacaaaag ctccgaaatc aatccgacat cctgcgacct caaacaatgc gtcaaatctt
      421 ctcagaattg gagccccaaa tgagggggag cagcattcaa gggagatcaa aacgcagggc
      481 tggcattgaa agggactaaa aaggagaaga atgttcccag tttattaatg gtgaggtctg
      541 gccggctgca tcccagccac cataggttac gttcattaaa ggaca
//
LOCUS       KCOD01000160             575 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 17863pyr ultra-conserved element locus
            uce-3887, sequence.
ACCESSION   KCOD01000160
VERSION     KCOD01000160.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 575)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 575)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..575
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17863pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>575
                     /note="ultra-conserved element locus uce-3887"
BASE COUNT          177 a          107 c          116 g          175 t
ORIGIN      
        1 aactacagtt tgcatgtaaa tggattcaac tcatctttgt ttaacgttgc cttttatgtc
       61 gagtttcatg aattgctaag cctgacaagg ttcactggga gtcttttaac tcccacccac
      121 aagttctccc tggctgtcat gtgactggca gtatagaggg atcagcaatg gcatttatgg
      181 ggaaagcggg aagacaggtg tcagaacggt ccagcaggca aaccgaacga acactaatca
      241 gctctggtgt tcttttacaa tccatatcta attcacaagt ttcattcttt ctgaaaaaca
      301 attactaggt tttgaagttc attgtgcatt tactcaactg tctcttcaca ttaacgtaag
      361 tgggaacaag agagtcagca ggcaaaggac tcttagagaa gatgaaggct ttattttaaa
      421 gtaatataat tacagatgag cataatgttt tacaataaat ttaaatgtat agttacatcc
      481 ttatgcgcta ggaaaatatt ggctggttgt ctctcgagct gaaactctgg tacatacaaa
      541 tgactttgct gagagaatct cattgcaaca tcaaa
//
LOCUS       KCOD01000161             470 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 17971pyr ultra-conserved element locus
            uce-4538, sequence.
ACCESSION   KCOD01000161
VERSION     KCOD01000161.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 470)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 470)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..470
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17971pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>470
                     /note="ultra-conserved element locus uce-4538"
BASE COUNT          151 a           91 c           94 g          134 t
ORIGIN      
        1 tggaatgact agtgacaaga cgagaccact gtctttaagt ttgaaaactc ttcagtttgt
       61 gaataaaaca gaaagtattg ctgataaagc atgcacaatt tagaagctct atgacaagca
      121 agaagtcagc ttacactgga aactctgaag acagtcaatt taaaggacaa aaaggttgtt
      181 gggcacagtt tttttctttt actgcataca gttccctgct atctaaaatt gtgatttatg
      241 cagtatttta atattttgct tattctttcc ccttgggtgc tctctgggca gcgataaaaa
      301 ggcgacgctg aaagagcacc attaatttgc tctgatgact ggccagataa ggggagataa
      361 tgggaaagat aagcggagaa gatataccat cagaaacccg attattacca ttaaaattcc
      421 agcccagcaa tctgcagaag cctgataatt ccttctccgt ttccaccact
//
LOCUS       KCOD01000162             723 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 18081pyr ultra-conserved element locus
            uce-1915, sequence.
ACCESSION   KCOD01000162
VERSION     KCOD01000162.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 723)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 723)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..723
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18081pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>723
                     /note="ultra-conserved element locus uce-1915"
BASE COUNT          199 a          149 c          163 g          212 t
ORIGIN      
        1 tgtaactgca caggataaca atgaatcgtc gcagcaggac cagacagccc ataactcact
       61 gtgcctgttt tataaatata catatttata ttgccgaagt ttgttccctg cacatgatga
      121 atgtaaccct gcggaccagg gtaggggaga taccaaggcc ttaatttggc aattgtcagt
      181 gtgcctgccc ggcaaacatt tttaattcta tgcttcagtg tagccgacga gtttatttcc
      241 agtgctcctc acaggcatag ctcaggccaa gtacaaattg aataaccttc aggaaagctg
      301 tgctgtcctt ctgtcggccg ctgtctttga aaattgcctg cagagttagt gagcaggaac
      361 agttaagatt tacaaacaat gatgaagctt gtcatgcatc tttcaccatt catcatctgg
      421 gtgccgtggc tgggcggtga agtgttcttc ataaaaacca gctcagtgtg aaatacacct
      481 cgcagcaatg tttactgctc tgaaactcgt cagcagccct ttatagtaaa tccagattgc
      541 gatgtgacat tacagtatat cattgcagag cgcgctgggg tttacactag gaatgagtgc
      601 agttcacacc agatgagatg tcgaaattga gttatgtagg aatttggctg ttatatgggg
      661 atagcttttg ttttctgagg actgaaagtt agctttatat atatatataa tctacacata
      721 cct
//
LOCUS       KCOD01000163             584 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 18188pyr ultra-conserved element locus
            uce-3757, sequence.
ACCESSION   KCOD01000163
VERSION     KCOD01000163.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 584)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18188pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>584
                     /note="ultra-conserved element locus uce-3757"
BASE COUNT          189 a          107 c          101 g          187 t
ORIGIN      
        1 tataagcttt gaataataag agcctggttt ctacatttct tttgttcatg atgtatcaat
       61 ccagtgtgaa aggaaacata aaaacagcac atatataaac caaatgtgca acagcaaaag
      121 ctttaacaaa ccttaattat tcaggtggtt aaggaacaag ctaaatagca gcactagtac
      181 actgtaaatc cttgtggctg acacagaagt ggttatgaca gctttcacat tatctcattg
      241 cagtatcgag gcagtagtcg cagctggctc atatgtcaaa atgtgtcagg acttaaatgg
      301 taaaacagga gtgcaacagc aattggcttt tcaatcaata atgcaatcaa tatatttcac
      361 agatattttc ccatatctaa attactctgc agagatgagg tagcctgact gagtgtttat
      421 aaatcaataa aacacagcta aaggacatct gctcctgttc tttcacttca aggtgcagtt
      481 tgccttttat ttccaactct ctcttattta agaatgtact tttgaggatc tttttgcaca
      541 caaatcactt ttgagttgca ttgtgactat agactatttc tgtt
//
LOCUS       KCOD01000164             583 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 18299pyr ultra-conserved element locus
            uce-1544, sequence.
ACCESSION   KCOD01000164
VERSION     KCOD01000164.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 583)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 583)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..583
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18299pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>583
                     /note="ultra-conserved element locus uce-1544"
BASE COUNT          197 a          123 c          111 g          152 t
ORIGIN      
        1 tttttgaatt agagataaaa caatgtcaaa ttggagattt gaggtcaggg ttcggtttca
       61 gtttcttatg gctgtacaca aagaatctaa ttacagtttt aaatgcccaa aatgccatgt
      121 ccaccaaaag cccgatgctc attagtacta gtaattaact ttacaactgt caacacaaac
      181 accacacagg ctgacagata gatagtagct ctgagggtgc taataaatcc ggaaataaca
      241 acttgacacg cagatgcaca aaaggatgca ggtgataaag aaatgttgac atcaaatcta
      301 attatcttcg aaacggccaa gtactgcaca atccccagta atgcactgtt attgctggtg
      361 atgagcccca ctggaacggc tcttaaccac agcctacaac ggagctttta cagccccttg
      421 tcatatctag tgaggacaat atcaaaaagg aaattatgag tgtcatgacc cctccaagtc
      481 aaaaatctag tgatgaatat aggctcagca aggcatagca gattaccccc ttacgagttt
      541 taaagccagg atgatatatg acatttttat caggcacttt ctc
//
LOCUS       KCOD01000165             693 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 18408pyr ultra-conserved element locus
            uce-3276, sequence.
ACCESSION   KCOD01000165
VERSION     KCOD01000165.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 693)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 693)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..693
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18408pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>693
                     /note="ultra-conserved element locus uce-3276"
BASE COUNT          246 a          107 c          117 g          223 t
ORIGIN      
        1 tctcgtatca aactagtctg aaaatgcttt gtaatgttgt catcaatagt aaaggaaaat
       61 attgtttcaa tttaaccaac acctcattaa cagagcagac cttatgtgca tgtacattat
      121 ctgcagaaaa aatcaattgg ggaaaagaag tgattaaaat ataatacaaa attattacag
      181 gcttaagcac aaaaattcta ttcaaaaaga ctgtggcagt attaaatgtt tttttgaaca
      241 tcatctctac catgaagatt gagtgtcagg tacttttttt tacctcctgc aggatttcaa
      301 gacttgattg cccaaatgac agtttactta ttttactgtc acatactttt gtgaaatgcc
      361 ataacaagtt gattacaggt ttcacatttt gcatagtgac aaaatcatct gtcatataat
      421 agtctgatgc ctgaaaacca tttaactttt ctactgaaaa taatgatatt tgaaacatta
      481 agtggattta aatgtgtaca ttttctaagt aagtctttgt tttaactgaa tgagaagatc
      541 cctttcaggc atgaatttaa gacttaccag acatcaacta gccagagggg gagataaatt
      601 aggaggggtt tcatgaatga aatgaaaaac agaaatggga agcctagata catcatggtt
      661 ctacaaagat gaaaaagtcc ttggctccta ttt
//
LOCUS       KCOD01000166             661 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 18517pyr ultra-conserved element locus
            uce-6729, sequence.
ACCESSION   KCOD01000166
VERSION     KCOD01000166.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 661)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 661)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..661
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18517pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>661
                     /note="ultra-conserved element locus uce-6729"
BASE COUNT          167 a          125 c          130 g          239 t
ORIGIN      
        1 ggttttgttt gtgctaggat tttcagctta aagtaccaaa ctgaaagata tttgaaaggc
       61 taaaccacag tccccctcag gagcacaata gaatatcaag tttccccaga cagtacctgc
      121 agagacaatc ttctttctga attgcaattt tagttttatt tttatatcag tgtgactgaa
      181 ctagtggatt agtttttatg ttcagctgtc tgctagattt atactaatgt ggtatgtttc
      241 cctttctctc ttcagcttaa taaccagttt gtattttgtt ttgatttttc agtcccgtct
      301 tttaccttca caccaacagg tatatatttg cacttttccc ccttctttgt tacttaagca
      361 tgtgtttgtg gtacttttta cataaccaac cagcccagct gtttcattaa tgacaggtgt
      421 cattattagt agtgtgcatt tgctttgtgg ctgacaatgt ttattcgtgt gttccacgcc
      481 agcatgccat ttgtagcatg atcctgtcag tttgtacaac ctgagttcca atggagtagt
      541 gacacgtagc gacaaaaggt gcttctggtg aaggagaaat aacttgcaga gctcagatgc
      601 tgacttgaaa gggattcagt gggattatag ttggtgaaat atcctctgaa tctgcattaa
      661 t
//
LOCUS       KCOD01000167             571 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 18628pyr ultra-conserved element locus
            uce-2676, sequence.
ACCESSION   KCOD01000167
VERSION     KCOD01000167.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 571)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 571)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18628pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>571
                     /note="ultra-conserved element locus uce-2676"
BASE COUNT          206 a           93 c           92 g          180 t
ORIGIN      
        1 tgatatataa caaactaatt taagctaatg taatgtttat aaagttactt agataatgac
       61 accatgcata ccattataat cattaaaaca caatctatgt gtttaaaaaa aaacttagat
      121 gattaacaca aaatcaagtt gatgtgaagg aacaattact tttagaaaaa aaatcaggag
      181 gtcctaatat tctgtagaat gagggaggat gcagctgtat gtcgacagct ttcatatcct
      241 catttgaata atgtggcctg aatctgtcac tttattcatc ctccttatgc tcagtgtact
      301 ctgcatcaac aacaaattaa gttgtaaata agagacaatc atcacttttg tttttaagca
      361 gcttctgcat ggagaatttc aatgtactgt ttctttttga cagaaagaaa gggattctac
      421 actctgctta tgtaagcaca aatatgagga aaccaaccga aatgaaacaa tgagggagca
      481 cttgagaact gctccaaaat gttcttggaa gtacatttct accaccgttt ttaataggat
      541 aatgaagacc tttactgtaa taattatcct t
//
LOCUS       KCOD01000168             576 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 18739pyr ultra-conserved element locus
            uce-4858, sequence.
ACCESSION   KCOD01000168
VERSION     KCOD01000168.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 576)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 576)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..576
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18739pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>576
                     /note="ultra-conserved element locus uce-4858"
BASE COUNT          195 a          123 c          101 g          157 t
ORIGIN      
        1 atcttgaaga tgttatccat ttaggtttta cagtttcact acctactgag cttgcaaaca
       61 ttaaaaatac ttaatacttg tttgtagttt ttagagcttt aaacactctt tggctgaact
      121 gacttttgca aagggaaagc aatttggagg ttagcttgct ttcattgcaa gtaaacccct
      181 actaacaagc atccaggaca aaaggagtta atatttaatt aaaaccagct ctatccactg
      241 taacaatgac ctggagccaa acaaggcaga agatgtatga gtcattcttt ctgccagtga
      301 atgagacagc tgatctccga agcaattcct caagacaagc agtcagaact ggagttctgc
      361 ctccattcac aaaaacacag tccagcatga accatgtggc cccaaccaca agcttttcat
      421 gtcacaccct tccagaaagc tacagcaaag taaacttgaa ctttaggcat aaacacagtg
      481 atttcactgc tttgtctcaa gatgcagcac agacctgctg aggaacgtta tttaataaat
      541 gaaaagttaa gcaaactata aagggcttaa acttaa
//
LOCUS       KCOD01000169             730 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 18852pyr ultra-conserved element locus
            uce-6654, sequence.
ACCESSION   KCOD01000169
VERSION     KCOD01000169.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 730)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 730)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..730
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18852pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>730
                     /note="ultra-conserved element locus uce-6654"
BASE COUNT          193 a          162 c          191 g          184 t
ORIGIN      
        1 cccaacatcc agcccccctt taaaccccag cagtggtttc tgatcaaaaa ggccaggacg
       61 agccctacga agacacagaa gggaaaatat ttctttctct ccagtgttac tgttttcctt
      121 tctgccatct cacaactctc taaattcatg ggagctcttc ctcaaggtga aatgaaggct
      181 ctgggctgca tttggtagtg ccgacaacag gggatgaggg tcagggaggg ttaagcaggg
      241 agggggcagt gcaacaaggc ggcctgatct agtgattaaa caaagggatt cagccaacat
      301 gtgtaaaatt aagtgatcaa gagttgatta cagagtgcat tgattgtgta ctgatggatt
      361 aaacagagtc gtgctcggga tgcgattttc caagccgggc acgaaaaacg caggcaattg
      421 acgtgttggc cagaaggacc cgcttctccc aatccctggc ttttatacat tctccggata
      481 aatctgcaga gaggcccgtg gaattataat cgattatcca tttctcaaag tcacttaagg
      541 gccctgagct acaagctaaa gtgccggtgc tgcgaagagg cattgggtat gcgccggcat
      601 gtgcaggtgc tggcgcgagg ggaaaatgtg gcaatgaccc tgtgtgctgc aagctgatga
      661 atctattttc ttgtaggaaa tagttttgac agttcaatat ctgtgttttc gatatgtgcc
      721 ccacacatcc
//
LOCUS       KCOD01000170             570 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 18963pyr ultra-conserved element locus
            uce-1121, sequence.
ACCESSION   KCOD01000170
VERSION     KCOD01000170.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 570)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 570)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..570
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18963pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>570
                     /note="ultra-conserved element locus uce-1121"
BASE COUNT          201 a          102 c          114 g          153 t
ORIGIN      
        1 ggtgaaggcc cagcctaaag acacctcggg ttctaaatgt gccaataaaa agattacaaa
       61 taatgttaaa taatatagtt tataacctca gggctgtttt caaacgtgta tagaccagtt
      121 gtcaacaggc agagaggaag ggaagggaaa ttataggctg cacaaaagag gaaagtaaaa
      181 gtgaaagctc cataaaagaa agtggaacta ttatggagca aaatgccaac tcattacaaa
      241 acagccaaat aagagagaaa tacagcttta cccgtaatag cagtttacaa gggaacattg
      301 tattgcaaca taacggtggt gctataattt gctctaacaa ctccaattat gccttttatt
      361 gatttggcaa cacatttaat aggagtagcc acacctcttg tgttacaaat cattaaaggt
      421 gttgaacagt gtaattttaa aattgtcctt ctcctacaga tgtcagtgtg acagcataat
      481 ttcccctgat ttctgctatg taaacagtgc gttacagtaa tttccccctt acaaagcaga
      541 aatgttgtca gcctgggttt gtgcagaaac
//
LOCUS       KCOD01000171             758 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 19073pyr ultra-conserved element locus
            uce-6195, sequence.
ACCESSION   KCOD01000171
VERSION     KCOD01000171.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 758)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 758)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..758
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19073pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>758
                     /note="ultra-conserved element locus uce-6195"
BASE COUNT          246 a          120 c          153 g          239 t
ORIGIN      
        1 aaacaaatag catacatttt gatattttgc tgaattcagc aagggtttat aggaatttct
       61 ggatccttaa gcaattgaat aaagcgattt ttagaaagca aatcaatcca tcaatattac
      121 atggtcctat ttttcttgga gcatatttaa aattgtacat ttgaggtgtc aaggttcagg
      181 agtcaagtgc tacatgtgat aaattaagga aaggtcagag gctatgcaat gcagtttcag
      241 aagattgtct acctctgcct ttgcagctca ttcatgctga agtgatgcac tctgggaatt
      301 actaccaaac tctgctctgc aacatctgct ctccctaagt gagttagtgc acgtcagaca
      361 tctttatgtc agaatattgc agtgatggat gcagtcttca gaaaatgctg cataaaaatc
      421 tggtgtgccg ttctggccat taagtgaaat tactatttaa attaatggcg ctgtcacagt
      481 ttatctgtgc aaagaatgaa cgctgattag ggtattaagt aattagcaat ttatcacact
      541 ggaacaaggt tgataataat taaagaagta atggtttacc aaagaaacta gaaagggagt
      601 cacttcttgt tatgtgagtg aaatcttggc tgaaaaattt aattcagtta aacaaagatg
      661 aggttcacag cgaaagaata cagctttgtt tgtttcaata gaaaaacagt tcattatcaa
      721 aattttagtt tgcctgtcag aagtccctta gggctgtc
//
LOCUS       KCOD01000172             569 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 19180pyr ultra-conserved element locus
            uce-6765, sequence.
ACCESSION   KCOD01000172
VERSION     KCOD01000172.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 569)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 569)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..569
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19180pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>569
                     /note="ultra-conserved element locus uce-6765"
BASE COUNT          147 a          138 c          135 g          149 t
ORIGIN      
        1 tttttctccc cagaaagtgg ataacacact acaaaaatcc atctgacttt atttaactgt
       61 aacatttatt aagagcagtg aaaaggtcag cacggagcta ccagtgtatg ggctaaactc
      121 ctttccccag ccttgaatgc gacaagaaag cagatccttt aagatgcaac tatcttaagc
      181 tcccctctta aactcttagt aattctaggt tttggagaca aacgtcaaag cagagggctc
      241 ttcccttcat tattcaagaa aaggccccat caatattatc tgtaataaga atctgctgtt
      301 gacatggctc accccgcagt tcctgttcca ggcagtagtc cctgtcaata ggattaaagt
      361 ggattgacaa gtccacaggc tgctgattca ttgctgccat caggctgccg gctgggaaag
      421 gcaagggcac catgagcctg ccgtggccag tgaagctttg atttcttgtg ccagactccc
      481 tggagctggg gagcgggaaa gtctgcgagt ggtttgcact cccaccccgc tgctgttggc
      541 tgagctgacg ggaagctttg aggtggctt
//
LOCUS       KCOD01000173             525 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 19293pyr ultra-conserved element locus
            uce-5733, sequence.
ACCESSION   KCOD01000173
VERSION     KCOD01000173.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 525)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 525)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..525
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19293pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>525
                     /note="ultra-conserved element locus uce-5733"
BASE COUNT          140 a           80 c          103 g          202 t
ORIGIN      
        1 ggtttgagtg ttcctgctgc aaaatccaat aatccttttt gtttcagtat catgcaaagc
       61 caaacttatt ttaagtgatt ttggagagtg ttggtgaata aattttttga tatatttgtt
      121 tgatattatt aagcttttca gatgttgata ttactgaatg atggaaaaaa gcatgggttt
      181 actgcattat tagaaagaat taaagtagag gctatatttt acagtgtcgt ctttcaaatc
      241 tagccatgct gtaaactgat gtttgctgta tgctcctcct gatttgaaat agatgaaaga
      301 gaatgaacct ttaatcacca tggttcacac tatgattgag aactcggcgc taagaccgca
      361 actgtaccag caagtaaggt cttggattcc ttagtgtttt ggttgttccc ttctttgctt
      421 tgggtcatcc atgcttccta aaatgctgca atatcgttag catggctttc ttgttgttta
      481 gtattaaatg tacacttttt ctgtcattta attagttggt gcttt
//
LOCUS       KCOD01000174             446 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 19400pyr ultra-conserved element locus
            uce-6388, sequence.
ACCESSION   KCOD01000174
VERSION     KCOD01000174.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 446)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 446)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..446
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19400pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>446
                     /note="ultra-conserved element locus uce-6388"
BASE COUNT          133 a           68 c           89 g          156 t
ORIGIN      
        1 aaatattgag taattcattt cattacagat gaatagtaaa aaccacagca ggctcttcca
       61 cttatttgtc tccaattttt ctttcaggct gaggtatgct ctggaacagt agcagaagta
      121 atccagtctg ttgtgaatgg tgcagatggt tgcatatttt gctttggtca tgtcaagctt
      181 ggtgagctcc caaattcgtt acagttaatt actatgtcag tctggtaatt acatgctgtc
      241 agctcctgga acaataaacc tggagtatat gaatagatta gaatgtcttt ttaattagct
      301 ttgcaaactt atcacagttt atttctacac tgttttaatt tgaaaaggta acatgtagca
      361 ttggattagc ttattcaaga gcaagtttat gtaggtgcat tgtgatgaaa atcaaaagat
      421 cagagatgca ttaatttgct gtgagt
//
LOCUS       KCOD01000175             534 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 19507pyr ultra-conserved element locus
            uce-6005, sequence.
ACCESSION   KCOD01000175
VERSION     KCOD01000175.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 534)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 534)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..534
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19507pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>534
                     /note="ultra-conserved element locus uce-6005"
BASE COUNT          176 a          109 c           73 g          176 t
ORIGIN      
        1 aagtcatagc tactcactaa aacaccactt gcaaactaca gctgggacca ttaaataaat
       61 tttgcatggt ctaattaact tggtttgcaa tctcaattac ttttcaccca agaaatcact
      121 tttgttcagt tttatgcgtg cctgtttccc ttttctaaaa aaaaatgatg taaggcatcc
      181 tcagacaagt gaactctaaa cttcatttgt ctttcagcag gcttgatggc tatgcattta
      241 aaaacccatt ctatcttata aactaaaaat taaatgtact cagctgtgat ggtcgtcatt
      301 gcatctgcta tttatatgct aataccctca ctgaaagatc ttgcaaatta ttccaccatg
      361 ccaatatctc atgtgcatct actcaaagcc aactaaatat ttttgaagat tttggttagg
      421 gaaccagaat atttattgct gtagaaccta gttccttaag cacatgcatt attcaactgc
      481 aacacaaaac acacttcagt catgttaaat gaaatttatt gtatgtaaga aaac
//
LOCUS       KCOD01000176             835 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 19616pyr ultra-conserved element locus
            uce-385, sequence.
ACCESSION   KCOD01000176
VERSION     KCOD01000176.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 835)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 835)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..835
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19616pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>835
                     /note="ultra-conserved element locus uce-385"
BASE COUNT          197 a          188 c          201 g          249 t
ORIGIN      
        1 ttttgctgca gtattgttga attttagtag tgttgattgt gcagactaat ggcttggctg
       61 gaatctgctc gtgcttctga ctgcagtgtg ctttgtctgc agaatcctac gttccgaaca
      121 atggaatagc cgttaagggc aggcaccaga ttgtgttgaa cttggctgaa ctagagaaca
      181 attagatggc tacacgatct cctcacacac tgatacttgc agcttctgat gcatctaaca
      241 tctgttaaca ttatgctttt tttccctctg ccacctttaa ctttcttaga tcctagctac
      301 cgttctttcc actctggcgg atacggtcag gatgccttgg gtatggaccc tatgatggaa
      361 catgaaatgg gtggccacca ccctggtgct gactacccag ttgatggtct gccagatctt
      421 ggccatgccc aggaccttat ggatgggctg cctccaggtg acagtaatca gttggcctgg
      481 ttcgatactg acctgtaaat catcctttag gtaagaagct ccaaccttga attaaaaaca
      541 aaacaaaaac agctgacttg gttggcaggg agggattggc tcaattgggt cccagtgtgc
      601 cagaataatg aataaatgct ctggaaacac actccaaact gacttctgcc gtgaagtgtg
      661 taatgtcttg tgcactggct tcatgcagtc tttggccctt tacaactctt ttttctcttt
      721 gcagctgtat catctgagtg aacttgcatt gattggcctg tagagttgct gagagggctc
      781 gaggggtggg ctagtatctc agaaagtgcc tgacacacta accaagctga gtttc
//
LOCUS       KCOD01000177             747 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 19725pyr ultra-conserved element locus
            uce-985, sequence.
ACCESSION   KCOD01000177
VERSION     KCOD01000177.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 747)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 747)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..747
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19725pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>747
                     /note="ultra-conserved element locus uce-985"
BASE COUNT          240 a          141 c          166 g          200 t
ORIGIN      
        1 gtgaaactgg gaaaaaaatc catgctctga attatttctg aatccagaga cagctgaacc
       61 acagcagaag cctcagtttg gagaagcttt aatagaagca ctgggacaag agaaaaatct
      121 cccattgtaa cgattcttag gttgggggat aaacacagta ttgagcctga acagaggaca
      181 gtaatatagc acagttttta agaggctatg tataagtggt agaggatgaa actgatggtt
      241 gaagtctaaa taatactacg tatctcacaa cttgttgaaa agcaccattg ggggagattc
      301 acagctgctg aattttctgc agttaataga gtcctttgat tcacagcagt gccccttgca
      361 caaaaaatac tggcctttgt gtattaccag aaactaattt tctatttggc tgaaaaggga
      421 aaaatggggt tattgcttct ccctcctaca gagcttttca ttatgcctga tgcactcaac
      481 ttctaagctc ttctgagaaa aaaaaataac tgaagaggca agaggtagaa aaatgagctt
      541 gttagcacat tagaagtgaa gtatcttggt gggccctaga aattcccagt ggtgtgttaa
      601 cttatcactc tatgcatgct ggcactgata gtctcccaat tgatcactct cttttcgcac
      661 caaaggtgct gccaggaagc aaaggctgaa ggcccacagg agaacaggct gctatcaaaa
      721 caagctgttt ttaaaagtct gcttgaa
//
LOCUS       KCOD01000178             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 19834pyr ultra-conserved element locus
            uce-1644, sequence.
ACCESSION   KCOD01000178
VERSION     KCOD01000178.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19834pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-1644"
BASE COUNT          229 a          116 c          138 g          219 t
ORIGIN      
        1 gcaggatggt actacttgaa actgtaaact tgctttgttc agaaagagtg agtcttcagg
       61 aagattttct tgtctgtcgg tggccctacc catatttcag agagcactac ttttggggag
      121 tgaataaagt tacctgcaat tttttactcc aattagaaga ttttttggca tttattactt
      181 tttaacttgt tttgcatagt gctatctgtt tagctgggtc acagagaaag ccatatttcc
      241 tatttaaaat gatttgtgta tatcgcttga ccacctcaat ggtttagtga aagcaaaagg
      301 cagcgattaa acagtttcaa atgaggtgtc ctgctgattt tatcaagtct gctgaatgta
      361 taatgaaaaa ggagaagctg acagtgacac tgctgagaaa atacagacta ccttagctga
      421 accatttaag gaggtccaat tatagatcaa atttaaaggg ttgaaacagc agatttacag
      481 acacaaatca atgaacatgg taatcccgat gaatatgaca gatattcctg ttacagaata
      541 ttgctgtggt tgaggatcat tacctttaca gtatcaaata catcacatct aaaagcagta
      601 ggacactcta agtgtgtact tgtattacag gcaatgacta ttcatttaca ccttggagca
      661 atacacaact aaatgctgaa actgagaata aagaagattt tt
//
LOCUS       KCOD01000179             512 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 19945pyr ultra-conserved element locus
            uce-8005, sequence.
ACCESSION   KCOD01000179
VERSION     KCOD01000179.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 512)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 512)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19945pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>512
                     /note="ultra-conserved element locus uce-8005"
BASE COUNT          163 a          103 c           96 g          150 t
ORIGIN      
        1 agccttcaaa ggcacagaca ggttctgact ggattaacat ttattgactg tttaagtttt
       61 ttgcttcagg acagagatac acgagtttaa ttgcagaggc tgttctgcca actgatcact
      121 agagtggcaa ccaaagcttt actaatcggt ccttcattaa agaaaagtct ctattacaaa
      181 acaaattaag catgctctga tctcaacccg taggtccaat ggcattacag caaagtttag
      241 gctgctagag cactgaaaaa cttattaagg tttagcgctg agatagcact ttggtattga
      301 ttttacaata cacaggtatt atgatttatg gagtgctggt gtcactctaa caagctgaag
      361 gacacacaat atcatctcca acatcattaa aattcagaag cctctagaac taactcatca
      421 accactgtgc attgttacag gctatagagc tgtattccac ttggaaaata cctgagtttc
      481 ccggacagtt gtcttccgga ataattaaat ta
//
LOCUS       KCOD01000180             627 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 20058pyr ultra-conserved element locus
            uce-6480, sequence.
ACCESSION   KCOD01000180
VERSION     KCOD01000180.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 627)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 627)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..627
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20058pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>627
                     /note="ultra-conserved element locus uce-6480"
BASE COUNT          189 a          128 c          108 g          202 t
ORIGIN      
        1 aaacctctaa aaatttcatt gtgctggtaa taaatccagt aatacctagg cttctatgac
       61 aatactaatt aattaacagt cttgaagatc aagtgaagcc attaatgagc ttttactgta
      121 gctgtggacc ttatatgagg tagaccagta aagggaaaaa ttattcatta aacaaatctt
      181 tcctgttttt aaacaagaac ctttacattt aaaactcaat aaatggtaaa tgtgtatgtc
      241 cagctgtgga tgcctcttat ctgatcagaa aatcatctcc ttcgcagttt cggtgtcaga
      301 actgctcatc ttcgcaagtc tgctcacagg atggcacttt ttatcaggta agaggcactc
      361 acgactgtac atattacagt cattaaggtc ctgtcagcac ctccattgta attcaacttg
      421 tggaattttt ataattcctc actacaaagt gctaaaactc tgtgagcaag gcctcattcc
      481 tgcagcacaa actttattta aagggcttaa ggtttctctt acttaggccg gtttttgttt
      541 gtggagagat atcattctcc atatcagcct caaaggatta tctacctctt cctatctcat
      601 tcactaagca gcattggggc aaggaat
//
LOCUS       KCOD01000181             709 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 20264pyr ultra-conserved element locus
            uce-5327, sequence.
ACCESSION   KCOD01000181
VERSION     KCOD01000181.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 709)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 709)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20264pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>709
                     /note="ultra-conserved element locus uce-5327"
BASE COUNT          245 a          158 c           96 g          210 t
ORIGIN      
        1 acattatatc actccatttt gtatgaacat tattctctac tcataagagg accctggact
       61 caggtaatat aaataatgaa ctgcctttta ttttgtgaag agagttagag gcgagggcag
      121 aaccatgctc tcttgcaaca gccaaggcaa ccatatagta caaacaggtc cacttctgat
      181 gagttcgttg gtgttagtcc ccttaactag aaaatcacaa atacccaccc caaatcccag
      241 actctactgt agttacagta atactggaaa aaaaaatcac ttttgttcca attctaaaat
      301 tgctgtcaag actccagaga ctataaacaa catctttcac tgctctgacc cccatgcaat
      361 tttaaatccc ccaacctttc tgagcactgt tggtgagcag ccccattaca tcttaatgac
      421 tgtcattaat ttctaaagag tgttaatttc agatttttaa tcacccctta actattcaat
      481 taaatttcaa taaaatgtta agtacttaca agtcttctca tttttcctaa aatacttact
      541 acattaacat gactgaagtc cagtggtaaa aatgaatgaa attaaatgat acagcattac
      601 cacaacagct cacaacaaaa attctgcaaa ctacaaactt aatcacataa acccttgcaa
      661 tactattagc atattttggg gagctttcag gaagacccca gttaaatca
//
LOCUS       KCOD01000182             693 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 20375pyr ultra-conserved element locus
            uce-343, sequence.
ACCESSION   KCOD01000182
VERSION     KCOD01000182.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 693)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 693)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..693
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20375pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>693
                     /note="ultra-conserved element locus uce-343"
BASE COUNT          232 a          137 c          144 g          180 t
ORIGIN      
        1 aaaaatgaaa gaaaaatgtt cctctagatg tattatgcct ttgggctcca tgtgagggaa
       61 gaaaaaagac agagaaagct actgtgaagg tcacagagtg aaagaacttc ctcagggcac
      121 agaataaatt aaatcccaag gaaaaaataa aatgtgattt ccagagtgtg aggcacaaac
      181 tcaaaatgac aatgattgac agccaaacta tatccgtgca atatcgaaga ctgcacgttc
      241 tcatttacct cagtgtagcc agcaagcgcc cattaaacat ccgtctgatg cccaaattaa
      301 ccttcttggc aaactgaaag aggcacaaac tatcataatc aacctttcat tatcacagca
      361 gcctctagtt aaagggtcag aataattgtg ccatcagagc cctgattgtt ttcaatcaac
      421 agacgactgg agtgacagct cagtgatgga gtagtttgat gaaaccgcac caggcctaat
      481 cagagcagat gaaaggaagg catgattggc gcaaatgaac agtcgtgcct ctctttttca
      541 tttacaatct gaaattactc ttaaatttac agggtttttt ctcccttatg agtacctctg
      601 aaagaatgtt tgacttatta tgggttctga cagtgcagag ttataaaaca caggtagggt
      661 tttcagccca ggctttaagt gggtattcag cat
//
LOCUS       KCOD01000183             747 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 20486pyr ultra-conserved element locus
            uce-6657, sequence.
ACCESSION   KCOD01000183
VERSION     KCOD01000183.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 747)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 747)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..747
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20486pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>747
                     /note="ultra-conserved element locus uce-6657"
BASE COUNT          268 a          111 c          118 g          250 t
ORIGIN      
        1 tcccagaaaa gtatcatatc ataacaataa cacaattact cttcatttca atccttaagc
       61 actactagct aaataataaa taagagttcc gattgatcta ttgttaaaat ggctagtaaa
      121 tggtcttttt attccaatta acaaatcatc tgctaaatct atgaatctta atattcaggt
      181 ctattcactt caattcatac aatttatctg caaatagttg ttgggctttt gattctaaat
      241 ataattagct gataattttg cttggctgaa ttacttttct ggagggcctg ctaaggctct
      301 cagtcgcatt atctagcaat aatgaatctg ataggtgaaa ttttttactg taatgaggat
      361 gagacacagt tgtgacacct gagtctagta ataacagaag actgctaatt atcgacagca
      421 cttttttgtg tgatgcacag agaaaaaaaa tccctcatta ttaaaaaata aaaagttaca
      481 attataagtg acaccggagg agagtaaata aaatggagtg attaaaacat tgctgcttta
      541 agggtgtttt taattaagtg gaaatgctaa tgttgtcata cttagcagat gggattaaaa
      601 ttagttattg taagtaactc atattttatg ttatggtttc cacagcatgt ctacaagatc
      661 taagaaagtg atacattcca taagacattt aaaaaatgaa attctcatag tctttacagc
      721 tcataataat gaacatcatg aataaac
//
LOCUS       KCOD01000184             595 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 20595pyr ultra-conserved element locus
            uce-5489, sequence.
ACCESSION   KCOD01000184
VERSION     KCOD01000184.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 595)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 595)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..595
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20595pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>595
                     /note="ultra-conserved element locus uce-5489"
BASE COUNT          183 a          125 c           81 g          206 t
ORIGIN      
        1 tttaaattct taacagaatt ctttttttct tctagaaata aaatactctt tttgaagagt
       61 cagtgacatc cattgcatta taataagtac ctaggaaaac ctagaaatat cacactgcac
      121 tttctgtcca tggcatagat gagcgtactc tccatcacac ttttcttgta caagacattt
      181 catggttctc tttacccttg ctgtcaatgg ttgctctctt gcatcaattt catttagaat
      241 tatactatag atcaatgcag ttcaagacca gtgtggctgc tgtgaatggt tgactgcaca
      301 tatattcatt taatatcaca ctatgacatg tattggccag ctgtatttcc tcttcacttc
      361 agcagttaat ttcatcaata acttatctca tagcctgttt cccttttatc cagaaaaagg
      421 gactgctttc tgccaagtca gctttcaata gtgatcacaa aagcaaaact gaaacaatac
      481 aatcctcttc tcattgcagt agatttgaca aagtaatttt acttattctc taaagtaacg
      541 gcttaactaa gctagattaa atatgtaata gaaagtataa ctcttcaccc ctacc
//
LOCUS       KCOD01000185             277 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 20697pyr ultra-conserved element locus
            uce-2423, sequence.
ACCESSION   KCOD01000185
VERSION     KCOD01000185.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 277)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 277)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..277
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20697pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>277
                     /note="ultra-conserved element locus uce-2423"
BASE COUNT           92 a           42 c           47 g           96 t
ORIGIN      
        1 tgcctaggag tgtgtttaag taatattgat tatgctggtg ctttgtgttg atctgtgata
       61 cttaacccag catttaaaat atcttttttc cattttacat ttgtgatgca agaataaaag
      121 caaagtacaa aacaaatagg cacttgaatt ctaatagcaa taagcaataa atgtcaggca
      181 tctggaaatt atggttgcaa tttcatcaga gtacactttg ttctattatg cctccatgaa
      241 ttttgctaca ggcaaaatct attacagata acagtta
//
LOCUS       KCOD01000186             759 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 20808pyr ultra-conserved element locus
            uce-1004, sequence.
ACCESSION   KCOD01000186
VERSION     KCOD01000186.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 759)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 759)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..759
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20808pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>759
                     /note="ultra-conserved element locus uce-1004"
BASE COUNT          203 a          121 c          143 g          292 t
ORIGIN      
        1 gtttattgtt tctctttttt taatggggct gctaaaaaag ttctttataa ttggagaaat
       61 tagctttagt ggaacatgca ctattcagta tgggagtttt ttgatactac tggcaaggct
      121 tttgttagtt ccaattttgc aaatttgaag atcccttttc aagaggtatc tatttgacga
      181 atgtgcagtt tttcagcatg tactttctgt cttgtatcac agtgttttag aagaatctat
      241 gctttactta ttcaccaggc tttcaataga gaatcacatt aatcctttta agctccttat
      301 tctaatgatt tattttgttg aaaaccgtag tgatcctcct ttgaatttta atgattgctg
      361 gctattcaag gattcattgt tttgacttcc tgtccttacc tttgtttctt acatgtctgt
      421 agggaacacc tgtctaatac tgtatctggc cttagttctc actggcttac catattcact
      481 caagcctatc ttaaggcgtt aagttgaaat gctagctact catccatgaa aataaatgta
      541 ggatatttac aaagataggc agatagacag cagagggatg gctgaatgtt ttttgatgta
      601 aataatattt tcaggtgatt gttgcaaaat ttgctcaata tctatagggg atttgtattt
      661 caatattttt gaagcaaatg cagtatgcca actgttgtca ggatttggca tcagccgctg
      721 aatttaggtc atggcactgg cttaaattga atttcagtt
//
LOCUS       KCOD01000187             617 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 20915pyr ultra-conserved element locus
            uce-4945, sequence.
ACCESSION   KCOD01000187
VERSION     KCOD01000187.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 617)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 617)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20915pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>617
                     /note="ultra-conserved element locus uce-4945"
BASE COUNT          174 a          108 c          135 g          200 t
ORIGIN      
        1 tttaagttct tctgaggaca gcagagacat ggaggcatga agacatgaga acagatgtgg
       61 aacatgttca agagtcagca gtgtctgggt gcatcccttt tgccctctcc ggggaacccc
      121 tgaatatatc tagaaatata gcttgtctta tatggcataa atgtcctgtg ttagcacaat
      181 gctttatata tttcaaactg atcgtggaca gtactgtggg ggtaaaaaac tgaataatat
      241 ctattttttt taaacagaag gccatcatta gccatgtctc acctgacatc ctttatctgt
      301 tcagagttca agcagtttgc cgaaatgaaa tgcgtagtga ctttagccag actatgctct
      361 ttcaaggttt tttacattga actatttgca gagtgcagta tgaagttact tcagaagata
      421 tttgaatgca cgtagacaat gctaatttca tattttgatc tgaatctcat ttccagtgag
      481 gagggtttgc ccagggtttg tcaggggaga atttagtttt cttggtacta gttttctgaa
      541 acaaattcat cagagactcc ttatgcatca gaggcacagc tataacagaa tgtgagtctg
      601 atcggtgtct gttttat
//
LOCUS       KCOD01000188             564 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 21026pyr ultra-conserved element locus
            uce-885, sequence.
ACCESSION   KCOD01000188
VERSION     KCOD01000188.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 564)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 564)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..564
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21026pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>564
                     /note="ultra-conserved element locus uce-885"
BASE COUNT          156 a          134 c          108 g          166 t
ORIGIN      
        1 cacagcagac cagggactgc accagaaccc ttgcagggag cagaatcgag gactgcccat
       61 gctacctgag caaccaggtc aaacatgtcc ccagtaatga agaaccattc attactataa
      121 cttgcatagc gctgtagatc actttcatgg tctccaaaga agctgagcag ttatcagtaa
      181 cgttcaaaaa tccactggaa agtcattcat ttcactttat agtcctaatt agccatttgt
      241 atagttctat aattaaatat gctcctttct catcaagttt ttcactttag taatgatacc
      301 actgtgccac aaacaggccc catgctgttt ggtttgggac ttattcatag cttttaattg
      361 gtcacccagt ggttagccaa taaccccttc tatgggaagc aacactctga atgctgttaa
      421 tgggctagag gcatagtgat tgcctcctgg tacccagcag tactgggaat aaagcaattt
      481 cctccactgt gttgtgtgcc caatagctaa tcctctccac tcctgaaatg tacactattt
      541 ggttataagt atttgtgctg gctt
//
LOCUS       KCOD01000189             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 21132pyr ultra-conserved element locus
            uce-3569, sequence.
ACCESSION   KCOD01000189
VERSION     KCOD01000189.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21132pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-3569"
BASE COUNT          193 a          116 c          123 g          202 t
ORIGIN      
        1 atatctttga agaattactc ccactactgc ctcgggaagg acaccaggga agcatattat
       61 tctgcataga tgaattgctt ctcttcatat tttcctttgg agctcttgga ttatgttttg
      121 taaatcagtt agcttcctag ccagagatta aggtaaattc tgctaaggac taaaagttga
      181 cttagagcat taagaaggat taatgtttag ctgtggtgaa gctgaagtag taggttagca
      241 tgtttacgca gtgatgtaga tcacaattaa tccaaaatta gtataaaaga tcaacagcaa
      301 ctgctcttgc atgccagctt ggcttagtcc taaaatcaag acttactttg ggggcaatct
      361 gtgtgcaaag ttgccgtgca tctgccctaa taggtttaaa gctttcagag gaatccatgc
      421 attttaaatg tttagcttct ttgccctctg ctttgagaaa acaaacgtag aagtcggtac
      481 tcaagatgct tctgctttct atctgtgtca cagatccatc agaatagatt ggtgctagca
      541 atgaacaaaa gcaaatacaa tttcctgcct ttgtttaaaa tacgtgcttt cattcatcat
      601 ccaagattaa taaaaataac ttttctggca gaaa
//
LOCUS       KCOD01000190             663 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 21246pyr ultra-conserved element locus
            uce-2895, sequence.
ACCESSION   KCOD01000190
VERSION     KCOD01000190.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 663)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 663)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21246pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>663
                     /note="ultra-conserved element locus uce-2895"
BASE COUNT          211 a          107 c          115 g          230 t
ORIGIN      
        1 aatcattatt tcctcttctg tgaagccttt tcttaaacta ggaaaagcct ttttaaaaag
       61 tcctcatatg atgataaaaa atgtaaattg taatttaggt ttttctttgt tttaatacta
      121 atagcaaatg catttcaaaa tcaaagtact tgttagaatc cacagcttta cactgctact
      181 gagactgtgt tttgatttct ttgacatgat ccctgattgc tgtgagaaga atcagttcag
      241 tatttttgtt cttagattcc ccctcctttg tcttgcagct acttgtggca gattccatta
      301 acaattgcag taggaaatac gagccacatc tcatcagagg caattatatg ggtgtctaac
      361 aaatcaggta aaaataaact ttcctcccag tggaatctca taaagcatac ttgtgttttc
      421 ctcaactgta tctttggaat tgatcctaga taattgttta gttgctctgc acccagtttt
      481 aactgcttaa aatgaattgc agagctggga agggagggag gaggaatgaa ggatgagcaa
      541 caatctagat ttataattat ttcagaattc agacggtata atgtaaaatt tttacaaaga
      601 aatgttatat ttggcaacac atatcaaata aaatgcaatt cactttattg attggtgaaa
      661 gtt
//
LOCUS       KCOD01000191             538 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 21355pyr ultra-conserved element locus
            uce-1709, sequence.
ACCESSION   KCOD01000191
VERSION     KCOD01000191.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 538)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 538)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..538
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21355pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>538
                     /note="ultra-conserved element locus uce-1709"
BASE COUNT          177 a           91 c           96 g          174 t
ORIGIN      
        1 gttaaatata ctctttttga gaccagatgc aataggttgt gtatcttgaa atgagctgca
       61 gaacctgatc agaatctggc ccattgtaag aaatgtttga taaatctcca aatctttcta
      121 tacagccatc tcagtagcca gatgttgatt gtgtacacat tgttttgtgt tgcttgcata
      181 aacattataa tcacatatag acaacagcag agctacaata tttagaaaac atttttcaca
      241 cctccttatt aagcaagact atgaaaatta tgactcatca ctgcaccatt gtttttgcct
      301 gttttcttgt gctggttgaa tagtcataga cagctggtat taatacaata ggtagtgctt
      361 agggaattaa tgggtgatgt ataatacacc acaaaggtat ctgtcatctg aaacaataag
      421 cacaatgatg taagatgtat atatttgaaa attgtgctca gatgagattt tctcaagcac
      481 aaagacatac cttgactgcg atgcaaaatt agtttttaac aattgcaaga agtctgcc
//
LOCUS       KCOD01000192             709 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 21461pyr ultra-conserved element locus
            uce-4023, sequence.
ACCESSION   KCOD01000192
VERSION     KCOD01000192.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 709)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 709)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21461pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>709
                     /note="ultra-conserved element locus uce-4023"
BASE COUNT          217 a          126 c          158 g          208 t
ORIGIN      
        1 aagtaaattt gtaaaataaa tagttcactg gcataaaatg aggagtaatg tggttaaaca
       61 aataacaaat gttttgatta aatcgtattt caatactatg ctaaattcca cctccaactg
      121 atttggcaca ttttcttttt tgaaactacc tttgataaga aaaaactcat cagtttagct
      181 tcctgttaac aaagagacag cagccgtctg gattattcta gatccgcagt gaaactgcca
      241 cactatgtat gctcaaacta aagctgtgca agtttgacaa ggggcagatg aatccaggag
      301 ttattgtgca gaggtttaag tctatgcggc agctgacggt tgaaataatc atctatacat
      361 cgctctgagc tagctgggga aaggttgaag ctgtatattt tcaacatatc tagcctaatg
      421 gttaatctgt tgtcttgtac agggggtgct gggtggaatc acagcaatag ctgacagttt
      481 ggaggaattg ctgtgggtat tttcagttgc ctgattcaca aagtggtagg tagcaaaaca
      541 gccttgtcat tgaatgaggg aagtcatgct gtcactccca tcaaaagaac tctggtagcc
      601 aaaagctcaa tcaacatatt gattatttgc atttagtaat acagggctgc agcttcccat
      661 gaaaggtgag ccacattgca gaatggtgac tgctcctttg gaggtcagc
//
LOCUS       KCOD01000193             882 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 21574pyr ultra-conserved element locus
            uce-794, sequence.
ACCESSION   KCOD01000193
VERSION     KCOD01000193.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 882)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 882)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..882
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21574pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>882
                     /note="ultra-conserved element locus uce-794"
BASE COUNT          258 a          183 c          169 g          272 t
ORIGIN      
        1 taactttaat gacaattttt gtaattctct aggagctatc tgagagcaag agaccaatat
       61 ttgcaagtca aatgaccaaa gcatcttttg tcagccaatt aaaacatctt cactgagacc
      121 tacagaacta acctttgtgt ggtcttggtc tcagatgaaa acagttcctt gaggcagttg
      181 gcagcatgaa ttttgagatg acactaaatg tgtgtgggaa cttgcaaaaa gcaaatccaa
      241 aaaaagattt aggatcaggg tttttctttc ccattttctt catagggaga aaaaggtgac
      301 gttagagatg ctggtaaaag ttagtcctgg tcaagcttgg ggtgaacaat agcacagtgt
      361 tgttgtgggc tgcttccacg acttagatat tcttcccatg tcagtataat cactactggg
      421 aggtagctcg attaaggatt accatatcat taatagtatc catgactttt gttcaaaggc
      481 tacttgtgta atgttgcctt gtggatgaag ctttctaatc ctctgagctg cagctgtaga
      541 gaaggggctt ccttagagcc gcccacactg acttccctgt ccccttggat cagttctaaa
      601 aaacagacag aaacaacagt caactcaaag ccagaaaaaa gaaacatcca ttctacattt
      661 ccacattcat ccccaagctt caatccctgc caatgtctcc cattcatctc ttctctaaca
      721 tccagatcac cactcggatg gtggccagat taaaggggaa caatgcagtt ttaaatgtaa
      781 agtttgcatc taattttttt ctttgcatga gaaaaaccac atttattcta tctatgtgtc
      841 tgtctaatgc tcagcctgta gtttgtcagt cttttcttat tt
//
LOCUS       KCOD01000194             430 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 21680pyr ultra-conserved element locus
            uce-4536, sequence.
ACCESSION   KCOD01000194
VERSION     KCOD01000194.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 430)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 430)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..430
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21680pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>430
                     /note="ultra-conserved element locus uce-4536"
BASE COUNT          150 a           79 c           76 g          125 t
ORIGIN      
        1 tgctgggcag gaattaacaa tcccaatata aaaaataata actggcctag ttgagggttt
       61 agcatttaag ctctttaaaa tcagtctaaa gctcaggcat tgaatgcaca tcattaaacc
      121 gcggtcaaga ctaaatcatt aactaatacc tgttattctg tttttctttt tagacctcca
      181 aaaggaagcg tggctacatt aagaataaac taattttaaa gaaaggcaag agacccaaca
      241 ggaagacagt ttaaacacac tgttctgatt gctaatacga agcagttgtc cttgagataa
      301 ccagtctttg cctttagctc aaatcatgtt tcacagcaac atgagggtac agaaccatca
      361 ttggtccaga ttattgtaca aaattttcag gcaatgtctg attaaaaata ttggcttatt
      421 gagaacagct
//
LOCUS       KCOD01000195             701 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 21786pyr ultra-conserved element locus
            uce-7527, sequence.
ACCESSION   KCOD01000195
VERSION     KCOD01000195.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 701)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 701)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..701
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21786pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>701
                     /note="ultra-conserved element locus uce-7527"
BASE COUNT          232 a          128 c          128 g          213 t
ORIGIN      
        1 atttttccca cttaagcaaa attctattgc tgcaaagtaa aaattctatt gctgtaaagt
       61 aattgtatga gtgagtgccc ctgtttaaat gaacagttta tggttactgt attaaagcga
      121 acatttcaac ttggctaaca caaccactga ataaacacat attgatatta tagaacaaaa
      181 taatatatta gtgcattgct catttgtgct ctgatagtca ccctgatact attagtcatg
      241 cggggagtga caaacacaat tacactcgag tgctaataga gtggaagggc aaaactgcct
      301 gacctcggca tcctgggtcg atttaaatgt ttgatgtctc attgaattag tatcacagtg
      361 tgaaagacaa agctcaaact aatggaaatg agcctggaca tgcaatactg ctgattgggc
      421 tgacataatt agaataatat tcttcacaca gctaataaca agcagaagaa ataaataacc
      481 aagagataac ttaatgactg catgctaaaa tgctcctttg aatatgctaa ggttagcatt
      541 ttctatttac ttatggagca ctgagggaat tttctctgtg taatcattag ctgtggtgat
      601 cagctccata ctggtcacta cggccatatg aaactatgca ggttgaccca acttttcaac
      661 atcattattt aaccctcagg gcattgttac aaatatctgt c
//
LOCUS       KCOD01000196             835 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 21897pyr ultra-conserved element locus
            uce-3798, sequence.
ACCESSION   KCOD01000196
VERSION     KCOD01000196.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 835)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 835)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..835
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21897pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>835
                     /note="ultra-conserved element locus uce-3798"
BASE COUNT          241 a          186 c          160 g          248 t
ORIGIN      
        1 agcaaacaca ctgggttgtc tcagttagat acacactgtg aatatgaatg tcatttgccc
       61 caggatttag gcaggacttg aagctgaaca gcagaagagt taatttatgg cacacagtag
      121 gactgcaacg cctggaattc tccatcaaga gaagaatctt tggaataatt taacttaagg
      181 aaactgggca tgcaacatga tcctggagag ctatgcaatt aatgttctgt ctgccacatt
      241 aaagatttac cactgagatg gtccatttgc atacaacata cccccagtgc caggaaaagc
      301 ttcacttgct ttcaccaccc agtacggcac cagacagcaa tagtgagatg ctgttttgat
      361 tcagttactg ctcagctgta tatcaaacat gttatagaaa caggccttga cttcaacatg
      421 tttggtttgg atcagtgaat tgagcacttg ctgagctctg gaatacaaat gatcaaccta
      481 tctgtctgag cactttccct gttggtgcca tcctcttgct gcctattgct aatgcagtaa
      541 tatgtatgca gtgcacagca tcctatgtga ctgccacttg acaaaatgtg ccagatcatc
      601 attgtctcca gacgagacag atttattata attcaatatg ttcctcatga gcactttttt
      661 ctgtcttatg ttacagtctg catagcattc agaataataa ctacatgctc ttatgacatt
      721 gcagcattga attcttgtgg ctgaaaaaat catttccttg gctctgacag aaattcacca
      781 acagcaatac cttcctgctt ctgaaaatta atgtgggatt tccctgctcc atccc
//
LOCUS       KCOD01000197             635 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 22008pyr ultra-conserved element locus
            uce-2348, sequence.
ACCESSION   KCOD01000197
VERSION     KCOD01000197.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 635)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 635)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..635
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22008pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>635
                     /note="ultra-conserved element locus uce-2348"
BASE COUNT          218 a          115 c          111 g          191 t
ORIGIN      
        1 atcattcctg ctttcacatc ccactgacca gagacagatg agcagctctg aaaggggtca
       61 ggcttgagtc tgcatccatc tcacaaatgc agtgagtgaa tgactggtag tagaatattc
      121 catataaaca ataagtatgc acagaaccca gatttcatta aggtagtttt tatattttga
      181 aaagcaatat taaaaaacac tggaaaatgc aataacagtt gcttctacaa gttttaacct
      241 tgtattgctt ggccattttg acatataaat tattgcttac tagctctcat aaatacacaa
      301 cacaataata tgtacagagg caaacaagca tgaaatatgc aaaggaaaac attggcaaca
      361 ttgattctgg taaatcagat tatttcatac ataccaggtc tcatgatggt ggataactac
      421 tagctgtagt ccctgagaag ttaggtaaat accttgaggg ggtttctatt ttattacttt
      481 taatgcaagc tgacaccatt atggcactca agagagaaca ggcaggtgtt cttacctcag
      541 ctcattgact tcacccagtg tttaacagtg tataagatga caataaacta tgcaaataaa
      601 tattactctg ctaaaatgtt tagtatttac atctt
//
LOCUS       KCOD01000198             428 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 22117pyr ultra-conserved element locus
            uce-2688, sequence.
ACCESSION   KCOD01000198
VERSION     KCOD01000198.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 428)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 428)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..428
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22117pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>428
                     /note="ultra-conserved element locus uce-2688"
BASE COUNT          140 a           75 c           69 g          144 t
ORIGIN      
        1 gatatatacc aaagatattt agtcactgga gacagacact ctggtttaaa ttacaacgga
       61 ttatctgact aaactgttgg gggaatattt actaaatctt taagaagact aattctttat
      121 aaaatgcttt gaaggctttc caaattattt tttcattatt aaacaagcat ttcagatttg
      181 ttatcttacc tttcataatg tctgcgagta catgtagcag cacttgtgct tccagggtta
      241 ccacctaatt catcataaat atgtttccat tgtcgacggg ctgttatctg taaaaatggc
      301 aatggaaatt taatcttgca tcattctaca gcgtttgagt tcaaaatgca tgtatgacac
      361 tttcagaaca gcatgtacta caagcactat aaaagcccct acagaatata tagagtatac
      421 agagcttt
//
LOCUS       KCOD01000199             778 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 22226pyr ultra-conserved element locus
            uce-2219, sequence.
ACCESSION   KCOD01000199
VERSION     KCOD01000199.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 778)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 778)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..778
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22226pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>778
                     /note="ultra-conserved element locus uce-2219"
BASE COUNT          227 a          182 c          171 g          198 t
ORIGIN      
        1 cagtatatcc attgaaattg cttcaggcca catttcagag ttgcactctt cattggctgc
       61 atccccggca aagcaacact tctggataac ccatctattt tacaatcctg agtacgctgg
      121 ttggaactgt tgaccgtgtc cttgccattg caagcaccat cttctccagt attctcctgg
      181 tcagatattc cacactttta aagcatgtgt aaaggattac agaaacccct atgtgcatct
      241 ccagagagca gccagaaagg gttaaacaaa atcaaccctg acaatactag aaacagttct
      301 ctcagtgtgt gttggttcac tgctccacag ggcatagcag atgttgtgtc tggtagtaag
      361 aagggcccag gaggtgtgag ctgtcaatca ctttttttcc taactacagg ctgtgctatg
      421 gatatgaagc acgactaaaa caatctgtct cagctggggt gtgtgaggta tcaataaccc
      481 ttggcagagg tgtcaagagc cttgcaggaa tcaaactacc ctgctgacca gctgcttagc
      541 aagttaacaa ggcagcattc agtgcttgct gccctcccag cccaacaatt aacacaactg
      601 gagcagggct ctgctgaaat gcaggaggaa gccgcattgc ccttgcactg gcgacaaaga
      661 ggtgcacagt tctttattca gaagcatccg taacaacata gtgagagaaa ctagggcaga
      721 gaacatattt tattctcaaa tcaaatatgc agataaatat tagcaatatg aggcaaat
//
LOCUS       KCOD01000200             229 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 22329pyr ultra-conserved element locus
            uce-5579, sequence.
ACCESSION   KCOD01000200
VERSION     KCOD01000200.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 229)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 229)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..229
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22329pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>229
                     /note="ultra-conserved element locus uce-5579"
BASE COUNT           72 a           44 c           28 g           85 t
ORIGIN      
        1 acacctgaag ctgcttaaaa tatttggaaa tattttaatg aagtcttttg agacatcacc
       61 taattcaact ttaaaacaaa ttttactatt attattttct cttcatccct tgccagagga
      121 aaactataaa tcttgtctca gctgaatgaa caccatttat catattcatt ttcttgtcaa
      181 tacaattatg aaaagccttt ggcctttttc caaggagcct gatttgctg
//
LOCUS       KCOD01000201             989 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 22547pyr ultra-conserved element locus
            uce-1348, sequence.
ACCESSION   KCOD01000201
VERSION     KCOD01000201.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 989)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 989)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..989
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22547pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>989
                     /note="ultra-conserved element locus uce-1348"
BASE COUNT          304 a          184 c          161 g          340 t
ORIGIN      
        1 agtcattaat tcaatttaga ctgcttttta ctgagaatca tggctttatt gtcaggtata
       61 tcacactgag gcatatctca acagcatttc agttttcaca tcattgctat ttccttctaa
      121 tattttattt gtagtgccag tactgtggat ttttgaactg attttatcac ccttgataaa
      181 tatttttaat ggctaacctt acttcgttaa tatatgcatt ttcttgcata tgtctaacaa
      241 tcaaaatact gttccagaag caatatttgt ttacatacag aaacagaaaa acgaaagcct
      301 gacttttagg cttttgacag gagtcttgta taagtggaag acttttaatt ctcaaattgt
      361 ttcacttcaa taactctttt aaagttgttg cgccaagatg cctggcggat taagctccat
      421 tgccttttct tgttttgaac taatgtattc ttgatcaccg tttaatgaaa ctatatacca
      481 catggagatt tcacattaga taagccatgt gaaaccctca tcagacaagt agctctggct
      541 ggtggtaatc cttcagatga aaatttcaga ctagcaggtt ttccaattta aatgagcccc
      601 tttaactata aaaaattggc acggtatgat tgctaaaaat tatttttaaa tttttatgtt
      661 gccaaagtac cccggtggct gtgaaaaaca gaaatactgc cgtaaataca gaaaacatta
      721 actggtcact gaggggatcc aatttacaac ccatagagac aactcacatg gctcactgac
      781 actggcatta ttgggtttgc aatagggcat tcagttctgt tcacaccaca cgaaagcaaa
      841 gctattctta aatatgcaat taaatagatt tattccacaa gtttctctag tcagtggtta
      901 ttactcactt ttacttcatt gcaccctgat ctatagaatt ttcatgatgt gttcaggtag
      961 cctttagaaa gcaacagaac ttgttatga
//
LOCUS       KCOD01000202             755 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 22660pyr ultra-conserved element locus
            uce-3446, sequence.
ACCESSION   KCOD01000202
VERSION     KCOD01000202.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 755)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 755)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..755
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22660pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>755
                     /note="ultra-conserved element locus uce-3446"
BASE COUNT          180 a          144 c          150 g          281 t
ORIGIN      
        1 ttttgtgaaa attggaagca gacaaatgaa aagttatgaa aaaggacatc taattctgtc
       61 agagtttctc tttgttatct ctcgctttta ctgtgctttg gatgcatgtt gctaagaact
      121 gacaactgaa attcagtttt accatttgtt tttttatctc catttcacta tgacattaca
      181 ttagcatttt gcatacttcc ccagcctaaa gatgtgctct tttagatgtg ggtgacttta
      241 acaatgttct gttcacattt ccttggatag accaaacaat tgcttgttga cccattttaa
      301 ccccttttga gcatcatctt caaagtgtaa ctgtccttga caatgaaaga gaccttccta
      361 ttgtctggtc cttccaggca atctttagca ttgagttaaa tggctttcag atggaggagt
      421 tggctggaag gaaggagaca aagtggtctg ttgtttctga gtgactttgc tagagtttcc
      481 cttttttctt ttagaatggt gcatttctat agaagatgac agacgttttg acaggtgcaa
      541 tatgctttga actgttgtgt cagataattc ttttgtcttg gtttttccca gcagagtggt
      601 acatctcctt aggatgctga tattgtttgc ttttcattta gtgtggtgaa gccttccatc
      661 ctccttttcc ctctccctct cttttttaat ggctctttgc atatatgtag ctgacccaga
      721 tgggaaggcg gagtgaccat gacttaaacc tctct
//
LOCUS       KCOD01000203             630 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 22773pyr ultra-conserved element locus
            uce-3180, sequence.
ACCESSION   KCOD01000203
VERSION     KCOD01000203.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 630)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 630)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..630
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22773pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>630
                     /note="ultra-conserved element locus uce-3180"
BASE COUNT          188 a          126 c          119 g          197 t
ORIGIN      
        1 atctataata tggaaaaggt aatatattta tatggtgtta caatagaaat ttctttgttt
       61 cactagaaga cttaatacta ttgccaaacc ttggggtttg ttgtctggaa gaggtaactg
      121 ctttcttatg acaaagactt gaaagatata ttcctttaac tcccctactt cacgttcaca
      181 tgtgttgaaa ctcattgctt ctggaaatga agatgctctg gtgtcagctg taaaatctgt
      241 atctcacttc ctcagacaag tggatattta ttgacagggt gtgagagaga aagagaggag
      301 agactgcctg tcctggagcc agtaaccttg gtgaagatgc aatgtcacaa acaccaagcc
      361 atcattctca tagatgtaca gcatattatt taaagggaaa caaatatcgg ccactgaatg
      421 tcactgcaag gacacatctt ctgcctctta actaaactta tcagtgcagt ggtttaatat
      481 ggtacctttt tcatcctccc ctcaaattca tcttacagag cagctcttga cactaccaga
      541 gagcagtcaa gactaagatt tagtgacgtc tgcttcaaac agatctagat ttattgacat
      601 ttgttgcctg cttcttctct cagtaactgc
//
LOCUS       KCOD01000204             483 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 22881pyr ultra-conserved element locus
            uce-5534, sequence.
ACCESSION   KCOD01000204
VERSION     KCOD01000204.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 483)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 483)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..483
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22881pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>483
                     /note="ultra-conserved element locus uce-5534"
BASE COUNT          185 a           85 c           72 g          141 t
ORIGIN      
        1 gagaataacg ttttatttaa aatagttaca gcgcgccttt tgatttagag tttaaagtaa
       61 ataatatttg tacatctaaa acatactcaa gacaaatgaa aagcctctag atgcttttgt
      121 atgagatgct gaagagctct acaaacttaa aagcacaacc tcaattaagc ccatcttcat
      181 ctggaaaaaa aattagcaac tgaaagctga atatattaga taatgcacac ttgcaggaga
      241 gcattctctt agcaaaaaat tcctgataac caacctaaag ctggccttcg agttgctcga
      301 tgctaatttt gtttgaaact gtttaactaa ctccgaatag atatccatat tcaacaaaga
      361 cataattaac ggcaaccttt tcttctgctt agaagacatc ataacaagca gaaaagtaca
      421 aaaagatttt tatagtaact aatttaagga caaagggttg acctctagca tttcattaaa
      481 taa
//
LOCUS       KCOD01000205             753 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 22993pyr ultra-conserved element locus
            uce-170, sequence.
ACCESSION   KCOD01000205
VERSION     KCOD01000205.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 753)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 753)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22993pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>753
                     /note="ultra-conserved element locus uce-170"
BASE COUNT          243 a          147 c          130 g          233 t
ORIGIN      
        1 acatacacac agggtctaat tcacacaata aatgcgtaat ttttccctac ttggggaaaa
       61 atcaaataca gcagaagtct aaaagaaggg ttactgaaat gctttgtaaa attacactgt
      121 ataattaatt ccatagtaag aacgttttta tggtgtgtgt tggtgacctt ttattaccat
      181 caagttcaca atgctggtgg gctgcctttt aatccctccg cagacaaagg ccctaaataa
      241 acacagatcc cttcctggga aaaagtcctc tctggttaaa tggtaaggaa atgagtaaat
      301 cattagtaat ctttaaagcc aaagctataa actcaagtta ccttaagtta aaatgaaagt
      361 gtcctgcaag agtttcaaag ttctgtcaca gatagaaatc tccagctctt gactccagac
      421 taggcgccag ctgataaaca aacaatttaa gtcaagagct ggagaattcc cagctttttc
      481 atttaatggc tttggccaag agtatttatt gcctccagtt ttattctcac ttagctctaa
      541 gaggaaattt aaactcatca ttatcttaaa gccccatatg ggccacagtc agctcacctg
      601 atagagctcc ttttactctg cctaagttct actccccact agaagtgatg taatagtgta
      661 aactaattaa atgtagtttt aggctgactt tttaataggc taaataaatt ttgttcaata
      721 tggtttatat tcccacttgg ggcagtaaca att
//
LOCUS       KCOD01000206             816 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 23105pyr ultra-conserved element locus
            uce-7468, sequence.
ACCESSION   KCOD01000206
VERSION     KCOD01000206.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 816)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 816)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..816
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23105pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>816
                     /note="ultra-conserved element locus uce-7468"
BASE COUNT          237 a          151 c          153 g          275 t
ORIGIN      
        1 cctggaaatg ccaaatttaa gtgccactca tttatgtaca aggattgaaa tatttctttt
       61 ccaggaacag taccagtttc tttataaggc aatgctaagc ttggtcagca ctaaggaaaa
      121 tggaaacggt cccatgacac tggacaaaaa tggtgctgtg atggccagtg acgaatctga
      181 tcctgcagaa agcatggagt ctcttgtcta attggaaacc tgaaaaggca cttaatttgt
      241 agaacttctg aagactgagt gaattttttg aggccttttt tgccagactc taggttatac
      301 aataacccaa ttactttttt acactgataa aagttttgat atttattttt tgccatttta
      361 tgtcttaatg gtatcctact gagcatttgc acctctgttt atttcacaca gtgaaacgca
      421 attttatcta gtttgcacta tatgatcagt gttactgcct ataatatcct aatataagac
      481 aagccctgat gtgacattcc atgacaacaa acatttttgt ttaaatgcag tgaagttttg
      541 ctaactacag tggccctcga atcttaaatc ttggatgcta ggccagatgg attctttcta
      601 caacagatac tgtacccctt cataccatat ttattattta atgatcacgt cacaggtgtt
      661 ctgcattcca gtggagtgga tgagcagtgt tcatcctttc ttaacaaaat gtggcaggtg
      721 attattagct atagtgaagg tgtaacagcc ttgtgcagct gaaacaatta tttctgtatt
      781 gtttcaaatt gctatgttgt acacttacag gcctga
//
LOCUS       KCOD01000207             548 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 23216pyr ultra-conserved element locus
            uce-3222, sequence.
ACCESSION   KCOD01000207
VERSION     KCOD01000207.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 548)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 548)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..548
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23216pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>548
                     /note="ultra-conserved element locus uce-3222"
BASE COUNT          189 a          113 c           85 g          161 t
ORIGIN      
        1 aagtacaaat aaacaaacca ctaaatgtca ctgttcttac ttccactaat tacacatgga
       61 taggaaagaa aaatttcatt taatgtcaat aaactgaaag ttagtccctc tgctttaagt
      121 gttagattta ggaaggattc ctttgctgaa aataaacata tacatagaag tgaataagac
      181 acagcaatca aagtattttt acttacataa tggaagtttc tcctatatct aacactgcac
      241 aagggcataa tcaaaaggta agcagaagtc ccttacactg cctcgctttg ccagagaatc
      301 accgtagtct gctggcaaag tccgcttgct ggactttttc tgctcatgtt caactgcatc
      361 ttcaattata ggctcaagcc tcatctggac aaacaccaaa gatgtggatc aatttctttt
      421 cattatacag tgaggaaaga tctaaaaact tctgaaatat ttagaaaact gcatagaact
      481 cactgatgtt ttaataaaaa acctactgag gctctggccc agtaatctct gaaaaccccc
      541 ctcttttt
//
LOCUS       KCOD01000208             910 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 23327pyr ultra-conserved element locus
            uce-1906, sequence.
ACCESSION   KCOD01000208
VERSION     KCOD01000208.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 910)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 910)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..910
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23327pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>910
                     /note="ultra-conserved element locus uce-1906"
BASE COUNT          268 a          149 c          181 g          312 t
ORIGIN      
        1 ttttttgctc accttttaca tcgggcaagt tcataggtta aaataatgta aatcagcaca
       61 agtcctttgg agccttttgg gccttttgag gaaccagccc ctcagggtta ggtgccttcc
      121 ttttgctgtt gggataagaa ctactttcct cacaggagtg tttaaggctt aattttttat
      181 agcacataaa gtgctcagag atgttcggat gagggatgtt gtgaaaatgc aaagtagtat
      241 tattgttgat aaattattta aaatattgtg gtccattgag aaaatactgg tttgtaggca
      301 gtgaagtggt taatacgatt gcatctctta caggtttcac cagatacact cactcactta
      361 caatggataa ttgttagctc ttgttgtgca gatgctgttg cagatggagc cctgtacctg
      421 catgcatagc aaatgaatta gactggcaat cccctttata aagcataaat atgtaatttg
      481 ttcagctgtt gtaattaaat atgtatgtgt gaaacagcca ccattcaggt cattaatgat
      541 gcgccatgcc aaattagagc ttacagacag taatgtacat tgttgtgcaa tgagggaatt
      601 gcaaataaca tagctaagcc tttcctagta aagtgatgga ttcagtggct ttaaaaggaa
      661 tatttatatt tccagcattt tgattgcttc agtctatatt tacattgatg ctcaatgaaa
      721 aagatacaat tggatgaaat ttttcctgtt ttgttttata ctctttgaac atgatagaat
      781 acccattagg tacgtgtcac acaacattta ttgggtgtaa catttcatac ccgccggtaa
      841 taggctgaat atgttgctat gatcattctt aaatatatag tcaattaaga cctggtaagt
      901 accttttctt
//
LOCUS       KCOD01000209             603 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 23437pyr ultra-conserved element locus
            uce-2831, sequence.
ACCESSION   KCOD01000209
VERSION     KCOD01000209.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 603)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 603)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23437pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>603
                     /note="ultra-conserved element locus uce-2831"
BASE COUNT          208 a          119 c          111 g          165 t
ORIGIN      
        1 tcctgctcgt gaacagcatt accctccaag ccactcagct ccaattgcgt gatacttaaa
       61 attcctcacc tcatactcat tggccatgag aggagaagaa aagagtaaac aaacaggaga
      121 tgacctttat gagtaagcat aaaaagatta atcgaccccc gtcagccagt cattaaatca
      181 aataagagct tttcttgtac ttttaaagct cagatttaca gtcaggcaaa ttgtgtaaaa
      241 aggctggtaa tacagtgacg cccagtgcca ctgggcttta gaaagctgac agttgctgta
      301 aaatagtcat taaacaacct ctagaagaga ctcatcagca gatgccccca ggtgaaggag
      361 agagaaagct gagagaatga aggagaatct aacatcttag catgactgaa ttaaacagag
      421 catattatgc tgattttcag agtcagccca gtaatttaat tttcatagca gttcctttga
      481 ttgtagcaac cattttatga aacattaata aaactttttt ttatgtagca tacatccctt
      541 ttccatttca ttaaggacag gatgtacaaa tttgctgacc attagctttg taaatgacaa
      601 aaa
//
LOCUS       KCOD01000210             572 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 23548pyr ultra-conserved element locus
            uce-4122, sequence.
ACCESSION   KCOD01000210
VERSION     KCOD01000210.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 572)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 572)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..572
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23548pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>572
                     /note="ultra-conserved element locus uce-4122"
BASE COUNT          195 a           95 c          106 g          176 t
ORIGIN      
        1 gtttacttaa actaaatttt gtattttcta ccaagaggag tacttacttt tcacagcctt
       61 agctgaccat acagaatggg agaaataaag cagatatggg tggggtgaaa cagattcatt
      121 ttctctctgt gcgtttctat gctgtggaag agactttatg cttattcaca cagagggagt
      181 ttagaaatgt ttttagaaaa tgcagatgtg taaagcattc ttaataagga tgggaaaaga
      241 gtttgcactc cccttttaac cactctctca cctcagccct tttcagcatg taaccttatt
      301 ctctgtggga ttacttggat gaaaaccaat tagagaactg ctcacacaat ataaatgcat
      361 acagattagt acagattgaa cggtaccaat gccaactaat catacagtat ataaagtcct
      421 aaacaatata gatattaagg aatgatgggg aaatggactc atattgttat aaaactgagc
      481 acaaaatgga agcagcataa aactgtttat ttaaataata aataaagtat aggttttctt
      541 ttgctctttg tggcaatctg cccatagaca aa
//
LOCUS       KCOD01000211             637 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 23658pyr ultra-conserved element locus
            uce-5447, sequence.
ACCESSION   KCOD01000211
VERSION     KCOD01000211.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 637)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 637)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..637
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23658pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>637
                     /note="ultra-conserved element locus uce-5447"
BASE COUNT          233 a          125 c          111 g          168 t
ORIGIN      
        1 taatccaaat ataaccaaaa ctttcataaa ctctgtcatg cgtcttgtgg caggagcaaa
       61 acctttccct ggtacaacgt ccattgccgg caatggatgc accaaaaccg ccaaggagct
      121 cagtgttatt gcacaatata tgaagacctg gaattcttcc aaagctcaaa ataaaaataa
      181 tggaattatt ctgacatttc tggacacctg cattaatact gtatgactaa taaaagcatg
      241 tcagttgcat ggactgaacc agcgatcaac atgcgcccag aatgcacact agtaaaaatg
      301 cagtcaaagg aagtagtctt cattgcctat aggtcacttc cagtcaaagg ttaaagttca
      361 aagactgaat gatcaaagtg ctcattttct cagtaggact atcttctgct acgaggatca
      421 caaaatggtg gcatcaacat gtgtcatctt taaaataaaa gaagagcatt tatggaaaac
      481 atataaacaa ggtgctatag gcagaaataa ttcctagcat agactaacat gcagaggaaa
      541 taccctgatt gttttttgtt caataatgac tcaagagagt atcaaaactt ccaaaattta
      601 gcaagtactc cattaaaaca acattgatat ttagaaa
//
LOCUS       KCOD01000212             540 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 23771pyr ultra-conserved element locus
            uce-4458, sequence.
ACCESSION   KCOD01000212
VERSION     KCOD01000212.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 540)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 540)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..540
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23771pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>540
                     /note="ultra-conserved element locus uce-4458"
BASE COUNT          121 a          122 c          152 g          145 t
ORIGIN      
        1 ggatcccctg tgatctgggg tctttgtctt agccatgggc tgggggtact gggtggatgc
       61 acagagagag gagagggcag gctggcatca gatgggaaga gggaggactc actggcgggc
      121 ttgacccgtg tctgtaattt gtaaagagca tttttacacc agatcaatgc tttcctcagc
      181 attttaatgc accccattgg tgtccttaaa ctctaatgat gcagtctgtg agaagctgcc
      241 atttattacc cacagatggg gtgataatta ttgacaagat tgtaactaat aattaaaccc
      301 atttgctcct ttaaacaagt tggtgtgaat tatttgcagg gagttcttta gcaggcctgt
      361 ggtcactccc gcgtgatgtt gcccaggagc aatccccagg aaggagggaa ggctgcctgc
      421 aaatcaaacc tgtggcggga gtccttccac tcaccttctg tgctcctggc tgtgttagtg
      481 agaggtgtgt gagcaccacc ccagtctcca gggctgtgcc ttctgaagct ccttccaggg
//
LOCUS       KCOD01000213             824 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 23881pyr ultra-conserved element locus
            uce-1890, sequence.
ACCESSION   KCOD01000213
VERSION     KCOD01000213.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 824)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 824)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..824
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23881pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>824
                     /note="ultra-conserved element locus uce-1890"
BASE COUNT          268 a          148 c          147 g          261 t
ORIGIN      
        1 caaggctgcc caaggcagaa cataaatagt gaggcacagt gtttgatgtg ggcttccaca
       61 taaggtattg aaggcacaca tcggtaaatc ctgaacctgc caactctttc ctgtgcagtg
      121 tcactccagt ctagttagag tgtatttaga aagtagctaa acacactttt gtggaaatca
      181 ttaaataaca cagcaattca tacatttgca gcagacagct tctaatgcac attattaact
      241 gaaaataaaa tctcagcatt tatcttatat gttattttat ccttcccagt atgactgaga
      301 atataatacc ctaaagttta agactggttt gtaaacacag tccctagtgt ctactattga
      361 tcttttgcta ttttaatgca tttttactga ccgacatgtc ctgtggtaaa gaatattgcc
      421 taaattagtt atctgattgg ttcttttgat taatgatggg actgtgcttc attacacatg
      481 acaacatgat cagaataatc actgcagcca tagaagttgg gactggcatt ttttattcct
      541 tcatttttaa agttcattta taaaattatt taatgtatac gtcctaagtt gtaatttatt
      601 tacatgacac ttttttcgat gggaactgtt gtactgtgtc acaaatggct aagaaaacaa
      661 ggtaaactag atgtacaaat caatgtcttc tggctcaagg ggaaaaaaac ataatcaaga
      721 ttcaagagct gaccttgtcc aaagtccaac ttgtcacaca acaaacagtg aggtgcccaa
      781 gaaatcactg ggatcagcag gatgtattca aaggaatgtt taaa
//
LOCUS       KCOD01000214             486 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 23991pyr ultra-conserved element locus
            uce-67, sequence.
ACCESSION   KCOD01000214
VERSION     KCOD01000214.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 486)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 486)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..486
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23991pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>486
                     /note="ultra-conserved element locus uce-67"
BASE COUNT          142 a          103 c          116 g          125 t
ORIGIN      
        1 acagaattgt taaaatgttt ggagactgga acttaaactt gtgaatctaa catttttgga
       61 gaaagctcag attgttaagg aatcagcagg acacatcacc gagctacaat aggttcactt
      121 tcatgtggat gctgtagcag gcaagccttc atggaaaaac tctgaatgtg aatttagcta
      181 gttttggata aagacgcctt tcagcgtcaa taaacaccat gaatgcagcc acggtagagt
      241 tacaacttaa tgagatgagg ggaagtgcac agggtcaggc ctcatctccc ggcctctgtc
      301 atgctaatca gctgggcagc ctgcagctga aaaactgctg gaatttttat ttgcatttca
      361 tttagttgga aggaaattga cccagatggt ccacaaaggc aatagaaggc tggcaagcag
      421 tctagtgctg cacacttttc cgaggggctg cacttgtcca cccgtccctc ttggagccca
      481 aaacat
//
LOCUS       KCOD01000215             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 24100pyr ultra-conserved element locus
            uce-412, sequence.
ACCESSION   KCOD01000215
VERSION     KCOD01000215.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24100pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-412"
BASE COUNT          206 a          140 c          140 g          216 t
ORIGIN      
        1 atttgttttt ataaaacatc tttgcagaag ctttagtggt gcctttgttt agtaccaatt
       61 acaaggattt catgcaattg agatgttttc atttaaaaac atggagatta cacatgcaaa
      121 ttccttgttg aaaatgggga aaagcagtaa ggtatccttg gttaactttt tagttattta
      181 aaagtagctt gtcggagatt gaatatttct atgtttcact agagctttta aatataaaag
      241 agatatgaga ctatatctga caccatcagg catattatat taaaatttat gaacaacttc
      301 atcaaaaacc actttccttc tcctgcatag agacagattt gttctgacat aaacgttaca
      361 tggctggttg cagcctcaga ttaatgcgaa gaccctggcg attcctttta gacgttattt
      421 tatgaaataa tacctgtcag ctgctgcctg atcccagaaa agggggcagg ttttccaggt
      481 catcctgcca tctgtcagct aaagctcatc tgtccctcca cattaccacc tgatctgtgc
      541 taacaggcct cacagggagc cccgcttcat tggcccggtg ggagcccggc aaagagactg
      601 cgcgaggaca tcacctgtga ttcccagatt taattatcac tgaagtgatg aagatgtgca
      661 cacagattga aatgcttttg aataaatgca tggctccgat ag
//
LOCUS       KCOD01000216             801 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 24318pyr ultra-conserved element locus
            uce-522, sequence.
ACCESSION   KCOD01000216
VERSION     KCOD01000216.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 801)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 801)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..801
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24318pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>801
                     /note="ultra-conserved element locus uce-522"
BASE COUNT          237 a          162 c          156 g          246 t
ORIGIN      
        1 cagagcctgt ttgtgcagct cctctttcat accttaccta gggcagggtt gggacttagg
       61 catggaagta cagggcttcc tttgcactgt cttaacttct gtgactctat tgctttctct
      121 cttttctctg tctctttcct gatttggctg cttagggaca gacaggtaat ggagaagaaa
      181 ttgaaaggga aaatacaggg aaaatgtaaa tgaaaagaag ttattataac tgttataatg
      241 aagtgccttt catttaaata taagaatgta acgctgaaat gaacttgtga tcctgaaatg
      301 catttttaat gagtttcctt tttattttgc tgcttcagtg gcatatttta aagacccttt
      361 gaaaaaagcc acattaaaaa ccccaccaaa tgccacaaca tgcaaaattg gatattggtt
      421 tattccaaaa ctgctgatca ggaagagtgg ctcttcaaca caaaatgctg cagtcacttt
      481 atttaaatga gtttgaattt gcattgtgat gtgccattct gatttagaaa aaaaaaatta
      541 gattttcaga tcaaattgac ccagccagtg aagcattaag aaactggcag gtttagtctg
      601 aaagcctcat gttatatcaa acctgcagcc ggtggaagtc acagagcagc agtgagaaaa
      661 caactttctc cctgaaatct ttctcttgtt accgcataag agttctcaca tattttctcc
      721 ttcttcccat aggagagcgc cctttccagt gcaatcagtg tggagcctcc tttacccaga
      781 agggcaacct tctgcgccac a
//
LOCUS       KCOD01000217             416 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 24428pyr ultra-conserved element locus
            uce-7646, sequence.
ACCESSION   KCOD01000217
VERSION     KCOD01000217.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 416)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 416)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..416
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24428pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>416
                     /note="ultra-conserved element locus uce-7646"
BASE COUNT          136 a           76 c           77 g          127 t
ORIGIN      
        1 gcccctggga atgaaaacgt ctgagcctca gtcaaatata attacctcat tctcatattt
       61 cctagtgagt gagaatgcat caatgcttgt gtgcccttgt gctgatagat tttgccacac
      121 agaataatca ttgttggaat taagcataat tgtcaagaaa gacttggtca tcatgagaga
      181 gactgtctca tacaactgtc cttttgcttt ccaacagtaa ttactttagt aattaatctc
      241 tgtcacttaa ctgtattaca ttttgaaaag agaaaatgga agaaagactg gtttctgact
      301 aatttacatc acagtttaaa atcctagaat agggtgaatc aaatgtcaaa aaatgggccc
      361 tttctagtat ctagcagaag cacagatgaa gtcaggctcc taaagtgagc ttcata
//
LOCUS       KCOD01000218             269 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 24538pyr ultra-conserved element locus
            uce-3697, sequence.
ACCESSION   KCOD01000218
VERSION     KCOD01000218.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 269)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 269)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..269
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24538pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>269
                     /note="ultra-conserved element locus uce-3697"
BASE COUNT           98 a           54 c           50 g           67 t
ORIGIN      
        1 cccctagaaa tgagtcacaa aggtttaaga tatattgcta tctcaagtgg agtcagaatg
       61 gctgtaaaat attgcctgcc aacactttga tccatacaca cgaactggat atagacataa
      121 gagcttacta aacaaactgg acagagtccc agtgggaaca ctcaaaaatg tattaatcaa
      181 agtcaagcgg cagagcaaat tgaaccagtt cattaattat gaaaattctc tcaccaagtg
      241 acactgtgtg aggttaacac gtttcaatc
//
LOCUS       KCOD01000219             721 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 24648pyr ultra-conserved element locus
            uce-1824, sequence.
ACCESSION   KCOD01000219
VERSION     KCOD01000219.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 721)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 721)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..721
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24648pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>721
                     /note="ultra-conserved element locus uce-1824"
BASE COUNT          210 a          136 c          132 g          243 t
ORIGIN      
        1 tgaatgcatc tttaaaatgc atgcaaccaa tctcagtttt aaaatcatac atgaatatta
       61 ttattatagt gataacaaga atccgtaact gcccagctta attcgaatgc ctaaatagta
      121 aggggagaaa tatgataagt agttgtcaat attaaaacca gctgaaaggc ttcaggcctt
      181 gtagtaggta gaatgaaaca gcagatttca gtatccacaa tcctttcagt attaaatttt
      241 cagtaaaata aaattacttg tatatgaaaa catagccttt ccccagctct cttttttttc
      301 ctgatcagct gatgaagaga ctagcagctc gctgctttgc tggcttgtta attttatccc
      361 cactaactgt gatttccgat agccggcctg ctgatagtgg taaggtaaat atcctttttc
      421 attgccgtct tgaagattca gtagaactac atcacaggca tgtgtaggtg tgtaacacat
      481 caaaagtcgg tattctccgt gtttcaatgt acaactgagt gcttgaggag agcaatgaca
      541 ttaactgttg acagccttgc atgctgtatt tagtattagc ttttctagct tccacgatgc
      601 agagaaattt ccttttctta atcttcatta gtctcagtgg tttatagcgc atgtcctgct
      661 ttagccagat gaatattaat gaatttgtgt gcaccctttt cttttcttat cagatctcga
      721 g
//
LOCUS       KCOD01000220             401 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 24757pyr ultra-conserved element locus
            uce-4558, sequence.
ACCESSION   KCOD01000220
VERSION     KCOD01000220.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 401)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 401)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..401
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24757pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>401
                     /note="ultra-conserved element locus uce-4558"
BASE COUNT          162 a           59 c           78 g          102 t
ORIGIN      
        1 ttatttaaga aaagagaata taaaattaag aaagacagat ggactcataa gagtgaaata
       61 caaatagtct gaatcaggat tgatttcaac ataatgtggt ggaggaatcc ccacttattg
      121 atcaacttta aagcccatgc acagcactta aaaagataaa gtaagcaagg tcagataatc
      181 aaagcattta aatagtaaaa acagcaactg ccactgtaga ctgctaaaat aaatccataa
      241 tacaaattgc tttagcaaaa agtggatgag cagctgatct tcctattgaa cttttatact
      301 gttcagtgac cacactgggg agaggattgg aagaaatgcc ttgaagatca atattgagtg
      361 agatgtagca gggattcatt ctgaacatga aagaattaca a
//
LOCUS       KCOD01000221             620 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 24865pyr ultra-conserved element locus
            uce-7328, sequence.
ACCESSION   KCOD01000221
VERSION     KCOD01000221.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 620)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 620)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..620
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24865pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>620
                     /note="ultra-conserved element locus uce-7328"
BASE COUNT          194 a          113 c          119 g          194 t
ORIGIN      
        1 aactaatgac agcagttgag gaggaagggg ggctttgtgt aaaaagaagt taattaattt
       61 cgggggtttt aatctctttt cttttgtacc aaactataaa acaaaaattc ttcgggagcc
      121 agaacatgta cctccagtaa tcgaaagaga ggcaaggatc tgactaatag atattacgtt
      181 ccattatatg gtcttgaagt caataaacat taggttacct tcatgcagtg aaaaaagacc
      241 agatttatta aaaaatctta tctggagggt ttgcatttca ataggatgtg aatttgcata
      301 ttttaacaat aacctcccat cattctgtct gatctgtgct cagttggcca tacagatcac
      361 tttatcttga atagattatc accagtttaa taaacccttc ataatatgca ggtataacaa
      421 tggtacttca ttggataaag aaggtattaa agttcttttt ctggaaatag gggtggccca
      481 gctagtgatt aactttatac ctctgtacat ccctgtgctg aataccgatt gaaggagagt
      541 attcccatta ttcacattca aaatggacca gctcttcaga gctcctgtta actcctcctt
      601 gcccatggca gctgtgcaga
//
LOCUS       KCOD01000222             687 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 24973pyr ultra-conserved element locus
            uce-5412, sequence.
ACCESSION   KCOD01000222
VERSION     KCOD01000222.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 687)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 687)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..687
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24973pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>687
                     /note="ultra-conserved element locus uce-5412"
BASE COUNT          227 a          120 c          111 g          229 t
ORIGIN      
        1 aaaggagtat tttaaatatg ttccatacaa gatgtttctc cattcagagt ttctgacatg
       61 tagacagata gaaatgctta ctaaaatatt gcagcacatg tgtgagctgg gatatagttt
      121 atagcagtga agagaggaat cactacatgc aagtgtatat tacacactga actacactgc
      181 tgtatatggt attaacttgt actgctttac tcacctcata caacagaatc caaattaggt
      241 cccattatta cattgaaggc tcacactcaa tagcagttaa gcttctttga atggattccc
      301 tattgtataa aaagtatgcc agtctttgac tgccaaaatc aattagtcac attcattatg
      361 cctctattta ttaatgctgt acactttata atgcatttgc tgctgaacaa agaaagttat
      421 aaaatatcaa atatgtgtta tgactgtaat tatagcaaaa gaagtaatga tctcttttag
      481 tcgctaactg gttacaaagc tcctgtaaag attacattag tggtgacaga tttatgatct
      541 tttccaagat gtaatccttt ctagctcaca tttttcaaca gaagaactat gtgattggtt
      601 acaggttatt ggcttcaata gttatattca gcagagatta ttgtgcttct gcctcccata
      661 atccaaacac acaatgtaat cttaaca
//
LOCUS       KCOD01000223             599 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 25082pyr ultra-conserved element locus
            uce-5200, sequence.
ACCESSION   KCOD01000223
VERSION     KCOD01000223.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 599)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 599)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..599
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25082pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>599
                     /note="ultra-conserved element locus uce-5200"
BASE COUNT          215 a          112 c           89 g          183 t
ORIGIN      
        1 taacaaatta gaatactaat gaagtgtcct tttttccacc tgcagtattt cattacatat
       61 aatgtaagtg catacattta atgtatattt atacagaact aataaaaaaa ttaaataaat
      121 ttgcattttt attatcactc ctttttaaaa agttattaag agtacttaga aaaacatatt
      181 gcactatgaa ttcctattta cagtctttgc ataaaggtgt aaataaaagc aactaataag
      241 ctacccagac atccttctga gcaagtggct aaaagccaat caatattatg agttaatcct
      301 ccctggatgc tcattcaatt aaaggtgtca gtaatgcctc atctgatgtg gcctcaatta
      361 aatccagcta tctgatggtt gaaaacacaa ggggatacag caacagcagc aaaaccagac
      421 aaataggcag ccttcgtgtg actgctaatt actacacctg gtgtatatta tggcttgtgc
      481 acttaacaca gcacgtggta acttccaatt cagctgcatt cactcagtaa ataatgcaac
      541 tagaaataat tctgtatttc agctccagga atttaaaacc acttagagct attacgaaa
//
LOCUS       KCOD01000224             388 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 25187pyr ultra-conserved element locus
            uce-6035, sequence.
ACCESSION   KCOD01000224
VERSION     KCOD01000224.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 388)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 388)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..388
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25187pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>388
                     /note="ultra-conserved element locus uce-6035"
BASE COUNT           92 a           91 c           75 g          130 t
ORIGIN      
        1 gggccaggct gccgcctgct gccgccgcgc gggtaatcac gcgtcccccc tcactgctga
       61 tttgcaagag cagattaatc agagcgcgcg gcttgatgaa atttgctgtt attgtgccca
      121 tttttagaaa catcttttat tatcttcatt attcatttac aggggaccgg catcaattat
      181 gcaaatgagt tcacagactt tgcagattac ttcatttgcc gctattgttt gtggaaattt
      241 aattattaaa tattattaag cttgcgtttt cttcaatttt ccgaggctta gtttcatttg
      301 atttttcctc cagctgctct cgtttccttt cagtgccaaa acagctcctc atcaaagcag
      361 ctctggcatg tgaagaccaa ataaaatc
//
LOCUS       KCOD01000225             485 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 25297pyr ultra-conserved element locus
            uce-813, sequence.
ACCESSION   KCOD01000225
VERSION     KCOD01000225.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 485)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 485)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..485
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25297pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>485
                     /note="ultra-conserved element locus uce-813"
BASE COUNT          135 a           94 c           96 g          160 t
ORIGIN      
        1 ccaaacccta cacataacac aagtctgtgt aagtttctgc tggagtttct caaagcccag
       61 gcagtccttt cttgctttta atgaaattcc tttctatttc ttcaggtatg actccccttg
      121 gacatggagg gcatattttc tccttgagtt aggacagctt atgacaaata atgatgagga
      181 atcaatagac aggagggaaa tattgggtga gaggctgaat gaatctcaga gataaattat
      241 tgaccacggg catggccctc tctcctttct cttatatgtt cgtattccat ctcactaaca
      301 acctgaaaga aaatcaaata ttttgtttgg gggcttcact aatatcagca acttttacta
      361 tcttaatggc atttttattg atctcagctt taatgggagc tgtatatatt tgatgttggt
      421 catttaaagt agatgtgagt aatagacttt cccagtgagg atcataaagc agccccttgt
      481 ctggc
//
LOCUS       KCOD01000226             426 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 25402pyr ultra-conserved element locus
            uce-4479, sequence.
ACCESSION   KCOD01000226
VERSION     KCOD01000226.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 426)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 426)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..426
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25402pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>426
                     /note="ultra-conserved element locus uce-4479"
BASE COUNT          134 a           74 c           78 g          140 t
ORIGIN      
        1 cttagctgtg tgaaatagta atgaattcac acagtttagc ccgtgaattt ccttactgga
       61 cagagtggga gggtggaaaa gtaaaggaca acatcagtgg agtatttcac attcaaagca
      121 aatttaattc acagactggg aatggaaatg tcattgcctt gctcagaggg ttaatcactt
      181 tctaatttaa actggcaaat tttttaatga cactgtgaaa ttaacagcat tttattgtgt
      241 taattatctg caggacacta catcattact tctaataaat gtaaatgtga ttgcctctcc
      301 taggacaata tagagacaag gtgaattttt attggctatt tactcgattt cagacccccc
      361 cactccatgt aatgcatatt caatatggtt tagtgcacta ctcttctgtg cattttagtc
      421 aataaa
//
LOCUS       KCOD01000227             639 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 25510pyr ultra-conserved element locus
            uce-5314, sequence.
ACCESSION   KCOD01000227
VERSION     KCOD01000227.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 639)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 639)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..639
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25510pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>639
                     /note="ultra-conserved element locus uce-5314"
BASE COUNT          221 a          117 c           94 g          207 t
ORIGIN      
        1 ataagcagca gattttaaac tgcaggattg aaaacagtac ctgatgtcat cgattgtcac
       61 ttttaaaagt ttgcatttcc ataaatttat acttgaatct ttgctgtact gcattcacac
      121 ttaggtagct aatttagggc tcaattttaa acccttatct tcattgatga atcacatcaa
      181 ttataaaaaa aatgcaatag agagaacaag aaataatttt tttttaagta ccttatgaat
      241 aaattttgca atttacagga ccatcagcac tacgtttacc tgaatagatg gcttgtttaa
      301 gtgacccaga tttgaagttg tttgtcttgg ttcatgtcct aagaccatca tattagcatt
      361 gatcagtctg aaggcatcaa taacaacctg taaaaacaag atgtcaagtc aattcttttt
      421 agaaaatgca actaatagag ccaagcaaca gtggacaagg cacaatcaac tctcatctgt
      481 ttttggcctt tatccagaaa atcatttaat tataatatta ataaaaaaga acctcctgct
      541 ggcgatcagc acactacact acctcgaagg tgacaccaat tattaccttt tccatggaac
      601 tgtaagtttt atatgcatta tatcatccta taacattga
//
LOCUS       KCOD01000228             539 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 25619pyr ultra-conserved element locus
            uce-4477, sequence.
ACCESSION   KCOD01000228
VERSION     KCOD01000228.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 539)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 539)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..539
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25619pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>539
                     /note="ultra-conserved element locus uce-4477"
BASE COUNT          158 a          123 c          126 g          132 t
ORIGIN      
        1 cttgataaag ccctgcattg ttagagcatt aaaggagcac atccgagtat gcacttgagt
       61 ctcagccctt caggctgtac agcacctaaa acccaacttg gttgctttta ctgtggcttt
      121 tcctcttcat gctgactctg ctctccaaat gtatccagag agcgtctcta ggagagaggg
      181 aatcgagggc gccaatgaag cggagatgta cttaatgcag acaccattaa taaatcactg
      241 atagttaaga tatagattgg gtgatgggtg gcagatggga aggaggaatg tcaaattgct
      301 tttctcatat agattattgg attaacaagg aagcagcggg catgtggcaa accagtgtaa
      361 caaattacta tcataaaaaa aaaagataga gctcatcgca ggctggtaat aatgccatgt
      421 cggccattag ctctctggag aggtacttag agcacaacat ccgtcttctg gaaaagagac
      481 ggccaccgca acaccagaat gaaggaggcc cccatttgct tctccttccc cctcccccc
//
LOCUS       KCOD01000229             374 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 25727pyr ultra-conserved element locus
            uce-1462, sequence.
ACCESSION   KCOD01000229
VERSION     KCOD01000229.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 374)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 374)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..374
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25727pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>374
                     /note="ultra-conserved element locus uce-1462"
BASE COUNT          115 a           56 c           77 g          126 t
ORIGIN      
        1 cctagatcag aacatatcat tagctgtgct tcttagtgaa cctgactttc ctcaagaaat
       61 ttacatcttt ctctcatttt ctgttaaggt ttcttaccct gttttctcac ctaaagaatt
      121 ataatgaggt agagagaatg agatctatgg ggaaagcagt ggacctagag actaaaggta
      181 aaaggatgat tgatggtatg aaattaccat aaaagtacaa tcaggatcag attttaaaat
      241 gaatttttaa gcagcctaag agatactctt tgatttgtag tctggtggaa tggataatgt
      301 ctcattcagt ggataaagtt tctcactgtg tgacttgagc tttttctgat ctttctgact
      361 gggagtaaaa tgga
//
LOCUS       KCOD01000230             724 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 25834pyr ultra-conserved element locus
            uce-5925, sequence.
ACCESSION   KCOD01000230
VERSION     KCOD01000230.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 724)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 724)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..724
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25834pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>724
                     /note="ultra-conserved element locus uce-5925"
BASE COUNT          210 a          168 c          146 g          200 t
ORIGIN      
        1 gagcctcctg aaacagcaaa cagcacagga tctgagcttg gagcacagcc acacagctag
       61 cactgttccc ggggttccct cagtacctaa taccatggat gaccaggtaa ctgggcacat
      121 tctctataca tttgatgata aatatcttta cagggaagaa agagggggac tcttcctact
      181 gccagttctt ctctgccccc tacggagcac aggcagcctc tattctgcca gtccattctt
      241 ccacatccag tgcattatta tgaaccctcc agcacacaca gctaattaga gaaaatatcc
      301 tttctagcaa tttaaatgat tttggcattt tcaggagggc acatgtaata ttcaaattac
      361 ttccactctg cgctgccttg tcttgcttgg ctcatcttcc caggtgaatt tgtagtctct
      421 gaaatgctct aatttcccac acaagccatg tcaaatataa ttttggtgca aagttggtaa
      481 ttatacgtaa catcagtctg atgttaaaaa cactgaaaaa tttagcaaga agagacgaat
      541 ggagagacat aagtctgaga ccaaggaacg aaaggcgtgc ggccccctta gtatttgcgc
      601 tcattaatta ataatagcat gttttcagga actgaaagga tgtgtttccc gaactgactg
      661 gaattcactt atgtcccaat tacactgtct cagtgaagaa ctttggtcag gtcttgctga
      721 agag
//
LOCUS       KCOD01000231             523 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 25944pyr ultra-conserved element locus
            uce-3290, sequence.
ACCESSION   KCOD01000231
VERSION     KCOD01000231.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 523)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 523)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25944pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>523
                     /note="ultra-conserved element locus uce-3290"
BASE COUNT          116 a          152 c          143 g          112 t
ORIGIN      
        1 ctcatggagg gcctccccat tttcccccca ccttggggag tgccaagaag gatcactcca
       61 aaaccgcact catggcttgg ggatgccacc acaccaggag gcttctgtgg gagcggaatg
      121 cccctgccat gcccgttcct gcctggctct cagcatccct gcatcccgtg gaggggttgc
      181 ggtgatggca gtgtaattaa aaacgcaatt aagtgctgcc acttagcaga aaagtcatac
      241 agtttgggga taattatctg acaatataac aagttgccca acattaatca ggcgctgatc
      301 tgctccggca gctgtgctcc cagcgccgga cgctgtctta atggcatcct tcaggaggca
      361 gcaataaatc aggcccttat gggggcagca cactgtcccc tgcctgctcc ctgcctgcgg
      421 ggtgccaaag taacaccttt actttgctcc tgcctgagag tgctgagaga gcggggcagg
      481 tcccacggga tcagccctca ccctaagtag aagagatggt ggg
//
LOCUS       KCOD01000232             709 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 26055pyr ultra-conserved element locus
            uce-4014, sequence.
ACCESSION   KCOD01000232
VERSION     KCOD01000232.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 709)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 709)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26055pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>709
                     /note="ultra-conserved element locus uce-4014"
BASE COUNT          199 a          128 c          154 g          228 t
ORIGIN      
        1 gcagctcaga attaacaagc agcatctgaa gggtttgtac agtgaaacaa ttacaccgtg
       61 tgagtattgt cattacttaa ctgttgcctg tgttgtacgt gcacaggaca gtttatcagg
      121 ggagttcatc agggcacccc cctggcactg taatggttaa tgcctaaagc cttggctgag
      181 atccttctgc tgtttgatgg ctcaactgaa gcttgatgtt tatggtggaa attgtcttga
      241 tttctttaga tgagatgagc atccatggag tttgaaaatg tgttttaatt aagattctgc
      301 taaattctac cagacaccta cttggaaaac aaagcaactg aataattaac tctgatgaga
      361 gcagatgctg ctctaatgac aacctgttac tgctcaagtg catcattagt tgttttactg
      421 tgttctttta atatgtccag agatcctcag ctaatgaata tactggtagc aatgcatcta
      481 aaataattct tcaatgtgga ctgttgaagc cgacaactaa atcaactgaa agagcatttc
      541 cactggtctg cgttctgtgt gcttgaaagc aaacacttct ttagttatcc ttgtgggatt
      601 attttagcca tacatcaagt gaagcttaca aattgatgag aatctaatga tgcatttatt
      661 tacagatgtg cggttctgtt ccctgttatg ttgccgaggg gtgagaaga
//
LOCUS       KCOD01000233             506 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 26161pyr ultra-conserved element locus
            uce-4943, sequence.
ACCESSION   KCOD01000233
VERSION     KCOD01000233.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 506)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 506)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..506
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26161pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>506
                     /note="ultra-conserved element locus uce-4943"
BASE COUNT          185 a           82 c           78 g          161 t
ORIGIN      
        1 tacatagtaa tttatcattt aatatattaa aggctgctta agacaaaaaa aattcctcca
       61 cctcttggtt ttttgaaaaa tttactggat gctcaatata tataatattc aatagcatgt
      121 gagaataatt tttatggaac tctgatagtt agaaagatag ataactcaat tattagatca
      181 tctatcaaaa tattcagatg tgtaagaggt tactaaaaag attgatgact gagaaagtcc
      241 actgattctc tagccatcat atccacacat ttggctagac aacatttttc gctgccttca
      301 caagcaagct tcattaccca tcactccact gaaaagagtt tattatgagg ctgccatctt
      361 ggcaagacta ttatttagat gataaatgtt gggggaaaaa gtgcgtctag aaacatgagc
      421 tttttgacag ataaaacaaa cagcatctac atttctaatt aacttaaatt tggcatatac
      481 aaatacaggt cagtaaagct atgata
//
LOCUS       KCOD01000234             743 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 26270pyr ultra-conserved element locus
            uce-4672, sequence.
ACCESSION   KCOD01000234
VERSION     KCOD01000234.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 743)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 743)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..743
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26270pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>743
                     /note="ultra-conserved element locus uce-4672"
BASE COUNT          202 a          144 c          165 g          232 t
ORIGIN      
        1 attaagtaaa caagaattta tggaagttca agctttacac agcattcagc tgcaagctct
       61 tatcattcat gtaaatttta caaacaagga atgcagcagt tttcaatctt aatgaaatat
      121 aagaatgttt tttcattcag tatgactcac agtttcgttt tgaagttttt gagcttctcc
      181 taaggttatg gagtggtcaa gcgaagcgga acagggtttt tgaaatcagg aagcctgggc
      241 gctgtttcat tcaggggaga gccagagagg gagggagcct attcctgtgt ttgattgaaa
      301 aataaaactg ctgctctcag tgaacctttg aagtccccca gcccagtaat tgtttcacga
      361 catttgcagc ttgaggcagc aagaatgttt gtggttgttt taaaggcatc tgagtgtgga
      421 ttccatatgt ttttattttc ttcccctctc ggagcctcaa gttcttgcgc attgccctat
      481 accaggtccc agcctactcc atgaactgtc tgtgaaagag ctgagtgaag gcattgtggc
      541 cctaagattc aagcgtgctt aattcagaga aaatctgtga atgcctgttg aggcaatagt
      601 tgattttagc cgtgctttat cgatcctata tttggagtgt ggcttactaa acactgtaca
      661 gtttgctttc ctgaacaaaa gacctcttca tatggccaat acttagggca tgatactcca
      721 aacgctcact atagagcata gtg
//
LOCUS       KCOD01000235             853 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 26379pyr ultra-conserved element locus
            uce-2069, sequence.
ACCESSION   KCOD01000235
VERSION     KCOD01000235.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 853)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 853)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..853
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26379pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>853
                     /note="ultra-conserved element locus uce-2069"
BASE COUNT          301 a          168 c          187 g          197 t
ORIGIN      
        1 atctgaagcc tttcctggca tatatctgtc ttcctgacac gtctacagca gatatctgcg
       61 ctagcgtgga taattatctt agtctacatt gctctataaa taaatgcttt aacaaacatg
      121 tcagagtaga gttattgcta caggcatttg gattatcaga gtaggacaca caaaatacac
      181 ataacaacca aaaatttagt ttctttagca gcaaaggtga tgtcactatt ttgtgaaatg
      241 caagtctaca tgagatgggt aaatcatgca aagcaaagca acagcagaaa aaaaaaatta
      301 aagcaagtaa aagctcttac tgtgcaacaa gctcgccaaa gttttcatca gggcagtatt
      361 ttcgaggacg gcctcgttga atatgacggc cacgtttaaa ctcttcatca tcaacagtcc
      421 aaaaggaccc aaactcatcc tctactctga taaagcactt atgcagtgag aggttggtgc
      481 gaatggcacc ctgggacaag agcagcagca aaggagatga agtggaaaca aagggacacg
      541 ggatcgggga cagaacagac atcaaataca gggaaaagga aaaagaaaat aaaatgcaat
      601 aagcataagc aaatggtttg tgagggttaa tatgcattgc cacctaaaag ctactagcat
      661 gtgatgcaac aaacaccaag caagcagggt cagggtactg gtgggcatac aaacagtagt
      721 gatgagatgt ttgtcttggt ttcccttaac tgagacaatg cgaaaccacc tgaggttggt
      781 ctaacaccag ctagcagcca aaagcctcta cgttaaactg taagcatgat ccgagctagg
      841 ctaagaagtt caa
//
LOCUS       KCOD01000236             624 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 26484pyr ultra-conserved element locus
            uce-7615, sequence.
ACCESSION   KCOD01000236
VERSION     KCOD01000236.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 624)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 624)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26484pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>624
                     /note="ultra-conserved element locus uce-7615"
BASE COUNT          212 a          121 c          105 g          186 t
ORIGIN      
        1 agaaataaca ataatttaca ccctttctgc aagcaatcca gaggcgacag gaacaaattg
       61 atggagacag aaatgggaga atcccaccct gtcagaagat gaatgagctg agcttgcatg
      121 atgtgaacca tggctgacag aagcgagggg gaatcaaaga gtttttgaca acacacgctt
      181 cacagctctg accactgagg atctacatga ttatctccag acaaaataac tgtgagtaaa
      241 aggcttacat acacttaaat taaacacagc agggttttag taatctctgt ttgcatttta
      301 ctttctggaa attgcttgga ctgggaacat ttcatttaat ggcattttta gttacctttt
      361 gtacttctaa tgccatagtc taaattcacc ccaaattacc caaaaagaaa cttttgtcct
      421 ttatttttaa ttgccgtagc ttccttacca attttactaa attaaatgtg ttttaaaaca
      481 tcaccgtatt tgaaacctaa ttatcccaat ctctgaatga agaatagcta acaatacaaa
      541 ccccatttat gtaatttatt ttgcaaagga aaaaaatgga atgcagttgc agtaatgata
      601 tacatgtttg caattccacc ctgc
//
LOCUS       KCOD01000237             692 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 26593pyr ultra-conserved element locus
            uce-6250, sequence.
ACCESSION   KCOD01000237
VERSION     KCOD01000237.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 692)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 692)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..692
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26593pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>692
                     /note="ultra-conserved element locus uce-6250"
BASE COUNT          181 a          134 c          126 g          251 t
ORIGIN      
        1 aagtttctga ttaattattc atcttctcta atgtctgaag ataggtccag ataagtttaa
       61 ttaaacagca tcagctggac agtgctggaa ggttctgtgg ggcatctttc tggtacctta
      121 cttctctcct tgatgtttaa aggagttatc ctgctgaggt tattttgtca ggtttctgtc
      181 agactgtctt tcccacattt tgcagttcat tgctgcagtc tctgataatc ttaccacact
      241 gactggctgc agttattacc ctttatatga aggatctatg ttgaaagcca gttatgagtt
      301 tctgtcccag tggattgcat gatgaagttg aagcaggctg tcatccaaag ctgtataata
      361 gcctcagctg ggaaatacaa aagtgccatg gattattgat agagtcgtat ctgcagttct
      421 gctgacaaat ttgatgcctc ttttgctagg tctctgttat taagaaatac ctctcttagt
      481 atgtcccccc cttctctctc cctgcgtgtt ccatttggct tggcttatga tttggctttg
      541 tgcctactta ataaccctca tgttacaaat tatgaactta gcaaagtcta atgatcttaa
      601 tttaaaagcc ctagaagtat aaatttaaca gaccatttaa aattattttt tatttttcaa
      661 agtacttcat aaagcattaa aatgcatcat tt
//
LOCUS       KCOD01000238             660 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 26701pyr ultra-conserved element locus
            uce-6905, sequence.
ACCESSION   KCOD01000238
VERSION     KCOD01000238.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 660)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 660)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26701pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>660
                     /note="ultra-conserved element locus uce-6905"
BASE COUNT          192 a          133 c          152 g          183 t
ORIGIN      
        1 cctgtcactt tgagcagggt aaatgggaga tgtaaaagca ctttgcagtg ttcagggaga
       61 tgagtgcaaa tgggaagacc atggcaagtg ctccctgcct gtgcttcaag gtaacccctg
      121 ccagcgtgcg ccgcctcctt gcaaatgcca tacaacgttt ttcactctct actggaggaa
      181 aaagctgccc taagaaaagc agaatgaggg ctgatgtttt gaaaggtgtc caagagtaac
      241 aaaactcaac tctccagggc tgagttttgc ctcttgtgtt tctcaactag ggtggttgaa
      301 tgtgttacag acctatcaga aattttgcta caaatgcaca aatattaatc tacagccatt
      361 tcctttgctt tcttaaacat gaatgaggat ttttgtctct ttctccctcc ataaattgtt
      421 catggtcaga gggggcatgt tccgtgtcaa agtcttgacc gccaggatca aacaaaaaac
      481 ccttgtgaac tcagaagtgg agacaaataa atgactatta cttttccttt tgcctggagt
      541 taaacctttt ctctgtcaac aatattgact ttgttcactt ggaaggaaac agagggagag
      601 agagagaggg agatttctct agatgctgca cagaaaaaaa acattttgga aggaggaatg
//
LOCUS       KCOD01000239             579 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 26811pyr ultra-conserved element locus
            uce-5323, sequence.
ACCESSION   KCOD01000239
VERSION     KCOD01000239.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 579)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 579)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..579
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26811pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>579
                     /note="ultra-conserved element locus uce-5323"
BASE COUNT          171 a          110 c          120 g          178 t
ORIGIN      
        1 ttatagtggc taagatttct accttttatt ttcaaatgtg aggcaaaccc ttgccctcta
       61 acctcatccc tctttccata aagcgtgtat gtaaaatttt catttagcat ctttagcaat
      121 cttccattgg gtttgaatag tacattttca tttcattcat catttaaaga cagataatca
      181 gaaagtcatt acatgggctg acaccgggcc ccgcgctcga ttgtattgta attgagcact
      241 gcagagcgtg tgccagatct aatggataat gaatatatta tgtcagcaga accgcctcag
      301 caaagctcct ggggaatcac agggggtact gcagtgacat ggagggtcac agatattgtg
      361 ctgatttact gatggagtga ttgtgtaatt aggtaatcaa tggtgggtag aggactatac
      421 atggacagct aattttatac aaataaagac catgcgtagg aggctcatat ttaggacagt
      481 gtgagatgat tttggtttgg cttaattatt cacaaattct taaccagcag cagaggtctg
      541 actccaattc aaacattaca gcaacctatt ttcacaaac
//
LOCUS       KCOD01000240             353 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 26911pyr ultra-conserved element locus
            uce-3836, sequence.
ACCESSION   KCOD01000240
VERSION     KCOD01000240.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 353)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 353)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..353
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26911pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>353
                     /note="ultra-conserved element locus uce-3836"
BASE COUNT          115 a           57 c           84 g           97 t
ORIGIN      
        1 agaaaagcca attcatcagg taagaaagac tgctgctcgc actctcaagt cctgccaaag
       61 acaaatggct gtaaaaattt aaaatcaatc attaacagat tagctgttgg tccaaagtaa
      121 atagcaatca gcttattagg catcaggcag agtgagataa aggggaagag ttattgaaaa
      181 tgaggatgtt tgctggggct gtgctgatgg agcagaacag ggaaaggctg tttctttgtt
      241 gctctaatta caaatggaaa ataacctaca gtgctgaaca agttgagctc cctagctgaa
      301 ttgaatggag catagtgctt atgttctacg tcatggcttg atttatcttg att
//
LOCUS       KCOD01000241             429 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 27014pyr ultra-conserved element locus
            uce-3316, sequence.
ACCESSION   KCOD01000241
VERSION     KCOD01000241.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 429)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 429)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..429
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27014pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>429
                     /note="ultra-conserved element locus uce-3316"
BASE COUNT          112 a           82 c           93 g          142 t
ORIGIN      
        1 gctctgagca ggaatttcca tccctaatga aatatctgct ggtggcacgg agtgtggttt
       61 tggtttagca gttacagcgg catcctgtaa tcatttacag cccttggaat gtatgggtga
      121 aataggagag atttatctgt tcatagttgt gatatgtaga caatgggtgt tcctaatgag
      181 gaacatctgc ttttgtgttt tcccagaaaa cattattcca ctatgaaaat gatactccca
      241 tccttttcag caacaccgca aagaaaatat gggccttttc ctttctttta tttgcttttc
      301 tttgggtcaa tctaatttcc cagggacact ttttactgac tgcggggttt gttctttaac
      361 acgtgagtta ctgtgctgga ggaacagccc cgaatgccag cagatactta aatgtgtaca
      421 gtaataaaa
//
LOCUS       KCOD01000242             559 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 27125pyr ultra-conserved element locus
            uce-2288, sequence.
ACCESSION   KCOD01000242
VERSION     KCOD01000242.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 559)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 559)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..559
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27125pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>559
                     /note="ultra-conserved element locus uce-2288"
BASE COUNT           82 a          178 c          104 g          195 t
ORIGIN      
        1 cgtgcgcctt ttccagctcg ctgcgtgcgc ggcacaggtc agctcgcctg cggtgcggcg
       61 tggctgtggg aagctgccgg ctcctgtgtt tagctgcctt caggcctagc taagccgagg
      121 cagtgtctgg ctccccagcc acaatctctc gttagaaaga aattaaaagc cactcaattt
      181 tggctaatat ccctctgtag gcctttaact ccacctgtga ctaacccatt cataatagct
      241 ctgttttagt ggcttgggtt gatgtatcct cgattaattt gggaggagag cggcagggcc
      301 atatctcttt gtctccccct ctcttaatcc ctgtcctaca gtctgtcttc tcccactatt
      361 tcatctctgc tgtcacttct ccattcattc accctcttct cgactttttg gtgttttctt
      421 ccccaactcc tgtctgtctg ccttccccct ttgttctcct catgtccttt aaccttgctt
      481 tttcctcctc ctcttggcca gtattgcttc cttttcaact ttcctttcct ttctcatcct
      541 ccctcatttg gactccttt
//
LOCUS       KCOD01000243             680 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 27230pyr ultra-conserved element locus
            uce-1928, sequence.
ACCESSION   KCOD01000243
VERSION     KCOD01000243.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 680)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 680)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..680
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27230pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>680
                     /note="ultra-conserved element locus uce-1928"
BASE COUNT          223 a          107 c          144 g          206 t
ORIGIN      
        1 tatgaaatta gagaaggaaa tcaaatcaat agtaggtcca gcaggagact gtgttctatc
       61 cttggatctg ttcacaggcg tgctggttgc atacagatta gctgataaat ggctgattca
      121 atagactggt agcaaacaca tgctttgcta gagatgactt tttaagtcat catacatcaa
      181 acagacagtg tcagcctttg aggataaacc agtgatggct tgttgtgctc tttgaactgc
      241 cttggagacc cagagactaa gtgcctgaat gtttccctga atccactggg aggattgaaa
      301 gcttcaaaga gtaacactat cacatccaag gggaaatgca ttgattgaag gaaccagtgt
      361 gaaatagtct tttataatta ccagaatgct ggaatcgact ggtgttttgc tgagctatat
      421 tttatcttta ttggattaac tgtgacacag taggttatgt caaagggaat ctgcatgaat
      481 attaaaagta aatgtggtgt gaataataga taacttacat tagatgcaac agcatgcagc
      541 aatttttact cacctatgta attagattaa aacaaatctg ctgaataaag tatattgtct
      601 tattataatc caaattcaaa agtgccaaga agttacgaaa tggggataat tgctgctctt
      661 tatgtgatta gtcacatata
//
LOCUS       KCOD01000244             800 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 27339pyr ultra-conserved element locus
            uce-1202, sequence.
ACCESSION   KCOD01000244
VERSION     KCOD01000244.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 800)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 800)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..800
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27339pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>800
                     /note="ultra-conserved element locus uce-1202"
BASE COUNT          250 a          145 c          133 g          272 t
ORIGIN      
        1 tttctgttta tgattttctt gcaaataaaa taaatttcca ctatagctaa aagatatttc
       61 agctttactt cctagtcaga aggtaaactt gtatattttg taattgatgt aacttgaaag
      121 atacatgtta agcctttaaa gtacatttag aattaaacag gccacattca aagtaaatta
      181 tctaaataga ttttggaaag agaaaggagt ctgttcattt taatatacct tcagaaatat
      241 tttacttctt gatgatgaca gcagctctta ctgacaacta ttaatacatt ataaacaccc
      301 catcagagtt atataaaaac atgtcagttt taaagagaac atctttgaca gcaaattttc
      361 tgattgtgaa acagctgtgc ctccagtaca atgcattaag tagtttattc cttttagata
      421 gttaaattgt gcatgaaatg ttgctggcgc aagggctcca aatctggcct gattagcgaa
      481 catctgttac attggaaaaa ttcatgtcta ccctaattag ctgtcaggct gatgtacatc
      541 agccctgatg gtgagggatc ctgtgctgtt taagtcaaac aggtttctct cctatcccat
      601 cacctgccct ttcaaatctc ttcctctggt gtgttgctgt aattagagat tgttggaaat
      661 acaatggagc aggttatggt cagttatagt cccatctgtg caattttttt attcccacaa
      721 aacttacaaa ctgatataaa gcagtcctag cagtcaggct gaggtctata tatttttcta
      781 atcctaatcc actcactaga
//
LOCUS       KCOD01000245             692 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 27452pyr ultra-conserved element locus
            uce-227, sequence.
ACCESSION   KCOD01000245
VERSION     KCOD01000245.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 692)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 692)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..692
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27452pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>692
                     /note="ultra-conserved element locus uce-227"
BASE COUNT          199 a          148 c          137 g          208 t
ORIGIN      
        1 acaaaggtat gggggaaata tttggtgcag agagagtgaa attgtagatc attttagtgc
       61 gcggttgcac tgcagattga atacccaatc tatcacccac accaaaagaa acactccacc
      121 ttgttaagtt agaagccaca ttttcttccc tgcagtgaac tggacatttt ctatgcgccc
      181 ttgcgcccgc acgtgcacgc gtgtgtgttt taggccggca agtcactgta cagatactta
      241 ttctctacac cacttccctt ttgaaacatt aaactgacac tggaactgac tgcacaagat
      301 tgcattttct cttcctaaac aacttgaatt gaaaggttac ttagtgtaac aatatttact
      361 tgcagaattg tgttgttacc aagggtataa tggatggtgg ctatgcaggt ttacgcaaga
      421 atgagtgaag catgaggcat tagccatgtg tttgacatgt ttcaaattgc tataatccag
      481 cattaaacac acccagcaat tcatgccatt tcttgcagcc ataatcttga ataaaacgtg
      541 cacaaccact tattatataa attagtatat gactccctgt tatagtcaca acagcgcttt
      601 tgtgtttatt ttgcatcaag acggggtctt ttatttgtac aaatagcagg atagcgcgcc
      661 gtgccgcaat tagacctcct cggtttatga ca
//
LOCUS       KCOD01000246             538 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 27560pyr ultra-conserved element locus
            uce-251, sequence.
ACCESSION   KCOD01000246
VERSION     KCOD01000246.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 538)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 538)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..538
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27560pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>538
                     /note="ultra-conserved element locus uce-251"
BASE COUNT          137 a          128 c          113 g          160 t
ORIGIN      
        1 ttctgtgttg ccggtcgggg tcgtctctgt gtcaagactt tgtattaaaa atcggtctcc
       61 agtgcccgtg tcttttaatt cattgcaagc tgtaggccat ttgctcacaa agcgcttgca
      121 gtaaaacaaa tgaatagcta aaatactcat ttgcatgatt cccatttgaa aacgattccc
      181 ctgaaattaa ggaagcggtt gtgaagatgg atgggcagat gagccatgca attaatattt
      241 ttcggcatcc tcttttaaag ccctcctaag actcgagcaa cacatgctgc ctcccagaca
      301 aattggggtt ccagggctgc catggcagca gcttgcccct ttattgtctc acttacatta
      361 tgcagtaatt aaaactattt accattccta cttatctgcc atctgctgcc attgaagttt
      421 cctctccaaa gccatcttcg gagtcaagga caaggacctg cttttattaa taggtagcgg
      481 accaggacga ttccacggag agtgtcattt tctgggattt acatctggcc accgtgac
//
LOCUS       KCOD01000247             503 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 27669pyr ultra-conserved element locus
            uce-7022, sequence.
ACCESSION   KCOD01000247
VERSION     KCOD01000247.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 503)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 503)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..503
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27669pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>503
                     /note="ultra-conserved element locus uce-7022"
BASE COUNT          156 a           91 c           84 g          172 t
ORIGIN      
        1 gcttttaaaa ttgatagtgc ctatattcac aagggattaa ggaagaaaat aagtatacat
       61 tttcacagcc tttaaatcac ataatttgcc aatgaaatta atgtgtatca tcttgaatta
      121 ttatttgatc ttatacataa gtgctctgct atttaaaagg agtcttaata acaaatttac
      181 caaaggcagt tcaaagccct tttatccatt agtatctccc attttcattt cattgctttt
      241 gttccttacc accttcttca tccagaaaaa taagtgtgtc gcttttgaaa tggaaaaatg
      301 gtttcaaatc actggcaaag cttaatgact tctgactgct gagatatgtt aatttaagcc
      361 agaccaaatg ttcctcagct gcaaatattt ggtgttgttc actgggaact ggcaagattt
      421 atgagggccc agtggcaaag gctctctgct cacatgcctc acattacaat tgtttcacat
      481 gttagatgat aaaaggctgt ttg
//
LOCUS       KCOD01000248             789 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 27781pyr ultra-conserved element locus
            uce-6807, sequence.
ACCESSION   KCOD01000248
VERSION     KCOD01000248.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 789)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 789)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..789
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27781pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>789
                     /note="ultra-conserved element locus uce-6807"
BASE COUNT          247 a          169 c          129 g          244 t
ORIGIN      
        1 tgtcaaatga atatttataa caagtggctt tcccttcaca aacactatag ctcaagcagc
       61 tcccattcat tatcgtattt aggaagtaca aacactaatt ctgtgaatca gcggcacagt
      121 ctgtcgtaac ttgccagaaa acaaggcctg caaaaaatcc aggagaaacg tgctgttgcc
      181 tccagttttt caaatgtctc tcccagtcac aggaattcag tttcaatatt ctatctgccc
      241 ttcagcatag catgccccaa tgaaacagcc ggtggagttt attttgcact ttatcaatac
      301 agtgtaaacc agcatgtgct tacctccatg gggttactga acccaacttg tctgtgtgca
      361 cagacagcac tctggccaca gatgtgactg gttaactgta caagcaagga ggataaatcc
      421 acacaacaat acttcattca ccaaggaaat ctgctgtgga ttacagcttc tctatggtta
      481 cgtctgttct taatttactg cttttattca gttttcaacc ataaatgagc cccttatgag
      541 gtattcacta tgtagaattg acaactcttt ttatctactc gaaaaatatt tttggataat
      601 aatttatggt tacaaaatat tttaagcagt ttgaatagtt acattatatt ctttcagtac
      661 ttaatgatgc agtatcccct gtaaaaatgg agacctggca atctatcgat ttcacatatt
      721 tttaacaaaa cccagcagcc ttgaccatac agaaatacaa attttaaaac tgcatatatc
      781 atgggaatg
//
LOCUS       KCOD01000249             701 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 27888pyr ultra-conserved element locus
            uce-4211, sequence.
ACCESSION   KCOD01000249
VERSION     KCOD01000249.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 701)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 701)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..701
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27888pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>701
                     /note="ultra-conserved element locus uce-4211"
BASE COUNT          211 a          166 c          127 g          197 t
ORIGIN      
        1 tagtttatgc cacatcaccc tgggtacctt tgttcataat gcacatctgg caccgtcagc
       61 tttaacttta ccctcaacac cctccgtcca tgctggcact tggcaccagt ggagcacggg
      121 cttgattggg atgctaaatc accaatatat aggtgtattt ggtaaacttg ccaaaaagca
      181 caatttttac cccaacagga agatttcatt tgatctgcat gtgacagggg agctgatttc
      241 atttcctgta aaaccccctc aaataccaca aagttacctg actcagctgc ttgtagaaat
      301 caaattcagt ctgagataac agctaatcat ttgtcacagt aagaagcaat tccctgaaat
      361 cggaagggaa aacctgccgc ttcaatccgc aggtctgtca gattgctaga aattacattc
      421 tgctctgact aacctctgca cttggattgc taacaacaag cagcccggtc tatcaaaaga
      481 gaatatcata caaccaggaa cagcttttga tttgttctat tccaataacc tgagaaaagt
      541 ttatggacat gcattgctgc ctagacctca attttcacca acctgcatac tggttggaat
      601 ttatagctct gcatccccac agtaatgtag gtaaaattta caggctgatt atctgctact
      661 tcataggaag aaaattagag ttgattttat aaccgcacaa c
//
LOCUS       KCOD01000250             588 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 27990pyr ultra-conserved element locus
            uce-5102, sequence.
ACCESSION   KCOD01000250
VERSION     KCOD01000250.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 588)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 588)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..588
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27990pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>588
                     /note="ultra-conserved element locus uce-5102"
BASE COUNT          200 a           96 c          124 g          168 t
ORIGIN      
        1 ttgcaggctg catttctttg gttgtgtgcc ctgcactggg taaaatggaa aggcagcact
       61 aagaatgcct gagcacatga gaggctggaa gacagatttt acaacagaac aattgcaggg
      121 tgtaggtttt aggcaataag caggtagcct cgctctctca aaagaagaaa gaaaataatg
      181 gaaaactgta acattcattt ggaggcctca aaggcataaa aaacccaatt ccaactgtta
      241 taggtccctg caggagtcta caaaggaact aagcttttta agtaagaaaa ctagattttg
      301 gcccagaggg ccctgtcatt gctgcttaat agatgaaact cttttgatac aaatatgctg
      361 tttacttctc agcttcagct ttcataaaat ataacctttt tatgatttac gacccctgaa
      421 aaagtgcagg atggattttt agctctgaat tggttgaatg tcaacaagaa aaatatagat
      481 aacatataga aatagcaggg tgttaatgcc acacaaaatg atgaaattat ttttgtttag
      541 aaaagttaag tttgttctta aagttcttcc tgagtgaaac tgaggaaa
//
LOCUS       KCOD01000251             503 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 28094pyr ultra-conserved element locus
            uce-5041, sequence.
ACCESSION   KCOD01000251
VERSION     KCOD01000251.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 503)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 503)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..503
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28094pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>503
                     /note="ultra-conserved element locus uce-5041"
BASE COUNT          182 a           81 c           78 g          162 t
ORIGIN      
        1 attgattaca taagtgggca gtggtggtcc tttcaagtat gttccttttg tttcagcttt
       61 acagtaaaat taccagcagc agtttacaat taagggaaat aataataact gtatatgctt
      121 tcatctacac atacaattac aataaactgc ttgctttaat aggattgtga aaaatctatg
      181 tttgacccct acaaaaaagt aaacattctt gttctggata ctatatcatt atcacaacaa
      241 agggaaactc ctgaaatctg atgatttaaa catctggaga atgttaatca cttcaaaatg
      301 acggatgttt tttatttcag cttttgacag acacactcct ttcatagata gatgattatt
      361 tacataaatt acatcaccaa tgtgaatcca gaataacttc aaaggataaa gaccttaatt
      421 aaaaggagat ttttacattt cttctgttgt agaacacaga agaaatacaa gaatttgcaa
      481 agggaaagtg aacgccacga ttt
//
LOCUS       KCOD01000252             559 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 28203pyr ultra-conserved element locus
            uce-336, sequence.
ACCESSION   KCOD01000252
VERSION     KCOD01000252.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 559)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 559)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..559
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28203pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>559
                     /note="ultra-conserved element locus uce-336"
BASE COUNT          179 a          126 c           79 g          175 t
ORIGIN      
        1 gaagttcaga tgagttcaga tctattcaag ccctctcgat gtttccatat gcttgactca
       61 agtccaaaca tctaatcgtc agctccaaac ccaatgaaga agcagagcag ggaattgtga
      121 actctgcttt ccagcactaa ggacttgagc actataatct gtcatttgta ctttttcata
      181 ctaaaggtga cagtctaatt cacatatgac caacacccat aaatcatgtt gggggaggaa
      241 atattcataa atccatatca aacagaaccc aaattatgac aaatgacatg gcagtcataa
      301 aattgcacaa gcacaactca ccaagtcatt aatttcatgg ccgtggaaaa taaacagaca
      361 catttttttc gcagccctaa taaattttaa aaaactcaaa gaatggtcca tctgcttcga
      421 ataattttta atttcctatt ctgtctcgtt cccattagct attccactga gatatttgct
      481 aaattctttc atttgcctcc tcccatctgt attcaattac tctattccca aatagagtta
      541 gtttttcttt ctcctaagt
//
LOCUS       KCOD01000253             818 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 28315pyr ultra-conserved element locus
            uce-2857, sequence.
ACCESSION   KCOD01000253
VERSION     KCOD01000253.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 818)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 818)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..818
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28315pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>818
                     /note="ultra-conserved element locus uce-2857"
BASE COUNT          238 a          141 c          151 g          288 t
ORIGIN      
        1 ttatcatagc acttaaaata aactcccttg aaagtggaaa tttgactctt ttttgcagtt
       61 gggtttttga agtgttagga caggttctaa ttgaaacact gaacttcatg tgcagcagcc
      121 tatgaatata atttctgctg atttaagaat ctgatgtcag ggcagtaagt atgcaattag
      181 ctttagttta agtgatagca acatgctgta aataagaatc ttaattgtgt ttgcaagatt
      241 aaaattcagt ttcattgttt ttttctcttg cttctttggt ggctttgtgg tatattcgca
      301 ttgctacctc taaatgaatg tcaacttgtt ttacctcgac tgcagccaat cgatacttca
      361 ttaggctgaa ttgtcttgtg cccatgcaac cttgaagctg tggcttaatt accacccgta
      421 ttatgcagtg gctcagagtg ctgtgctcag ctgtgtcagt ttcgaacaaa agccatgctg
      481 ttgcccgcat ttaggaaaaa tggacttttg aactaaagaa ctataatatt ttctaagtta
      541 acaattcatg atgataacct tttttataat gtgtatgtca gttttcagta agtttacatt
      601 tgaataggtt tctgcatatt gcaaaacttc aaaagacgag tacctttggt tttcatgctc
      661 aacccatctt tgatttaaga taattttaaa ttaatggcaa agtaacattc atctgaaaga
      721 gaagacagga gaaagtgcag tcaaatggca atcatgacaa atgacatctc ttgtctgaga
      781 gtcatttttc ctcactagac tgatttgtca tccccact
//
LOCUS       KCOD01000254             508 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 28425pyr ultra-conserved element locus
            uce-3089, sequence.
ACCESSION   KCOD01000254
VERSION     KCOD01000254.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 508)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 508)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..508
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28425pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>508
                     /note="ultra-conserved element locus uce-3089"
BASE COUNT          122 a          133 c          125 g          128 t
ORIGIN      
        1 ctcagaccca gcaggtctgg ctgctcgctc aggctcaggg ctgaggtgtg agcagtgcac
       61 gggagccctt ccccggcccc agccgcagag ctgtggtgtc gtggccgtgc aggagatgtt
      121 tgatgcccaa ggtagtgttg cccactgcta tgccaattac tggatattaa tggcaggata
      181 gcatgcatat gcctaaactg ggaagcagaa ggttaataga cgaacagcac cagaagatcc
      241 catttatcag tttctattta tctctccttg ggaggtggca ggtttacagt aaataccttc
      301 tgtcctccta atttcctaat gatggggata atgatggaga atggtgaagt cattaactgg
      361 gacagcctct gtgcatcact ctgtcaacca catctctcca agacctgcaa tgaaaagtga
      421 taggccccag ctgttcacca gattctgttt ccccatgctc aaccccaatt gcaggcttag
      481 cagttcaaaa gccactccct ttctctgc
//
LOCUS       KCOD01000255             341 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 28530pyr ultra-conserved element locus
            uce-1979, sequence.
ACCESSION   KCOD01000255
VERSION     KCOD01000255.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 341)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 341)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..341
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28530pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>341
                     /note="ultra-conserved element locus uce-1979"
BASE COUNT          118 a           64 c           61 g           98 t
ORIGIN      
        1 ttacagaatt aaatccatat gccaacacaa aacaatgaag aaaacaaaac taacaaggta
       61 tccatttggc tttgtttgac tttgtctgcc agagaataag aatgcaagcc tgggtgtaat
      121 ttaatgcaaa ccttggccta tcctggtcat gcatatgact gaccctcagt gcaagaccat
      181 caattttcta ttaaagatca gagagttgac atatcaaagt caacatctag ctgaataact
      241 gcagtaactt gataataatt cttttgtgga tttcagagtg gcttttcggt aaagtatcag
      301 aaaggtagca gttttcaatc ctgacccaac aagatctgaa t
//
LOCUS       KCOD01000256             589 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 28634pyr ultra-conserved element locus
            uce-4822, sequence.
ACCESSION   KCOD01000256
VERSION     KCOD01000256.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 589)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 589)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..589
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28634pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>589
                     /note="ultra-conserved element locus uce-4822"
BASE COUNT          171 a          150 c          109 g          159 t
ORIGIN      
        1 ggcttaactc taggacaaaa ccacctatgt atcctcagtg tcttctgccc tttgaggaga
       61 ccagcaaagc agtctgctgc tcctggcaaa aactgaacag gcttccctca gccccaaacc
      121 agcttcctcc tgatcctcct ctgatgtttg tactgctcct ttaaatgtgg tgcatttgac
      181 aagctccctc actctcaaaa gagtgagaaa ttttcattga ttgatttctt catggcttct
      241 taaacagata attaattcac cgtgaacctg cggacacacc gtcgtgagtc gttaatattg
      301 taaattcaca tatacttcaa taatcgcctg acccccccgt caccccgaaa aacagatagc
      361 tgtgcagcaa ggaggagggg aacgggaatc gattttcgaa gacatgaagg gatcacccag
      421 caaagggaag ctattgattc tcttttataa gacaccgcta taatatttat tcttttgtaa
      481 acagaattaa cccagcatca tgggtcattc ctatcgaaca actttcctca catgtgcaca
      541 gcaatgctga ttgtatcaga tgaggtagaa acatccaaac tgtaccacc
//
LOCUS       KCOD01000257             359 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 28737pyr ultra-conserved element locus
            uce-2667, sequence.
ACCESSION   KCOD01000257
VERSION     KCOD01000257.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 359)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 359)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..359
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28737pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>359
                     /note="ultra-conserved element locus uce-2667"
BASE COUNT          136 a           80 c           60 g           83 t
ORIGIN      
        1 cagctccaac agaaagccat agccattaat ctagagacct ctgggagttc aggatcgcgc
       61 tgtaaaacct agaccctgcc aagactgcat cagataaagc catcaatgca ttgtaaaaaa
      121 gacacaaaac ctatttcatg ggctgcactg atcaagcaat tacaatcatt gactacatta
      181 agcaaagaaa cagcggggtg ccctataaaa ttgactgcca acttgaataa tcaatagact
      241 ccatgtagag taaattaaat aactgaaaaa ctatttggaa aagctgaagt taaaaagcca
      301 atctgtaatc cctcatccat ggaaaaacaa tcctgcatcc aaaagattct tttgcttgc
//
LOCUS       KCOD01000258             388 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 28845pyr ultra-conserved element locus
            uce-6003, sequence.
ACCESSION   KCOD01000258
VERSION     KCOD01000258.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 388)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 388)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..388
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28845pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>388
                     /note="ultra-conserved element locus uce-6003"
BASE COUNT          136 a           78 c           65 g          109 t
ORIGIN      
        1 aaaagttact gtgtgcagtt aatatcgaac agcagccatc tccagatgat ccctgctgca
       61 tccaatttct gccaaaatgc tttctgttaa acctccatca aacagacaca cggcgcacaa
      121 aagaaaacct catcaccaag ggaaactaat ccaccggtgc gcaatgtaag cctgtcaact
      181 ttttattata agaagtcatc actcatttca gtgaagatta aaagtatgac taaattgaga
      241 aaatcctctt agccattcgg aattttaata gaggagaaaa gggggtgagt aaaatttaaa
      301 ctgtatgtgc gtgtgtgcct atatatctat ctatagtgta tgaatcaaat atataaaatt
      361 acttatatat ctccccacac aagttgta
//
LOCUS       KCOD01000259             714 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 28951pyr ultra-conserved element locus
            uce-3359, sequence.
ACCESSION   KCOD01000259
VERSION     KCOD01000259.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 714)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 714)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..714
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28951pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>714
                     /note="ultra-conserved element locus uce-3359"
BASE COUNT          243 a          118 c          111 g          242 t
ORIGIN      
        1 aaatgcttgt accttaacga gtggattcca ttactgtata ctaaattcct taccaaataa
       61 tttatagtat ttaattgtaa aaagatacac tcaggaccgg actgctcaaa cataacaaac
      121 aatactattt tatggccatt tgaattattt atgttttcta atgacaaaaa ctcaccagtt
      181 ttgattttgg tactgaggtg cttgagaagt acacagtagt gtcattacca taataacttc
      241 tgaaattaaa acctgtctaa aactctacgg aaagctaaca tccagttcat taaccattcc
      301 tgttagtttg ttttcaataa tgcaaaaatg attagaagtt taatttgcta atcacctgtg
      361 ttttgactgg cagtggatat ataattctct gcagaagtct aaactagccc ttgcagaaaa
      421 taaaatatgt taatgtttta tcaagtctaa taatatgaat tcaatcatgc ctaggttaat
      481 cgttgatgga tccacaatta atttctcctt aagtctcctt aattttagag acaatggtga
      541 taatgagtaa gaaaaatggc tatttgtctt caagaagttt tagtgcttca cttaccaatc
      601 atgtggtttg caacatgaac ttggatatcc cactcattgt agaaaaccat ctgacatttg
      661 atgcactggt aggtcttctt ctaaagaaac aagggtagat aaaatttact gaaa
//
LOCUS       KCOD01000260             384 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 29057pyr ultra-conserved element locus
            uce-2474, sequence.
ACCESSION   KCOD01000260
VERSION     KCOD01000260.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 384)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 384)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..384
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29057pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>384
                     /note="ultra-conserved element locus uce-2474"
BASE COUNT          116 a           73 c           96 g           99 t
ORIGIN      
        1 tcacgaatga ctgatctttt aaaagagaag gagaaagtgc acagggatgg tgacacagag
       61 agaaagggat gaggaatggg gggcaggcag aagagggctt tgaccttctg tgaaggatat
      121 aaaaaatcca gcagcctcag gggacaccca actatctagc atattgctgt taaaatgtct
      181 gcaaaattta atacacttgg catgccatct aatcagtcct tggaaaccac ggtttctctc
      241 cctcctgcac tccaactgtg tcagatcttt tgggcatgag gttgggtatt ctctacagat
      301 gacagaaagt ttggtgtatg cacacaaggt tggaggcttt aatttgtgtt tcatttgccg
      361 agccaaacaa acaaagttta tgca
//
LOCUS       KCOD01000261             693 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 29166pyr ultra-conserved element locus
            uce-4175, sequence.
ACCESSION   KCOD01000261
VERSION     KCOD01000261.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 693)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 693)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..693
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29166pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>693
                     /note="ultra-conserved element locus uce-4175"
BASE COUNT          182 a          134 c          132 g          245 t
ORIGIN      
        1 ttgctgtttg tatattttgc ttgaattgag catttgtctc tgaaattaag cttgctattt
       61 ttctgtcaca catatagata tagtcaaatc ttgtttgaaa ctcagttcag ggtctcatct
      121 tttgcccttg gctttaactt atgtgtgcct ttgtctgtat tgtctgtact tgtctgtact
      181 gcaaacactt atgcatgttt ctgctattat atatagacta aatatgtcat aacacatgaa
      241 tgcaaaagga tcaaaaatgc cttcctactt tataatctgc tcagccagaa acagactctg
      301 tttctacact gccttttcct acatgtcata ttatcatcag ctgttcttat atcccaaaag
      361 aatactaact actgatcgat tgcccggaca tgtctggctg tggcctacat gtgccccggg
      421 tagttcattt atttgccacg gtggatttgc tagagtggaa tttaatcaat agctaactca
      481 ttaattctgg tcctcgagta tgtagggatt gtgcagtgta aaaatgactg gctggcttca
      541 gctttgattg aaatatgaca aacactacag ctgacagcct tggcaggtgc tgggctgaat
      601 atgaattttg cttatttatc ctccatgtgg acaagaggac attttaatac atatcatctg
      661 gagtacagac tcatgggata cctgagttgt aat
//
LOCUS       KCOD01000262             749 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 29375pyr ultra-conserved element locus
            uce-5125, sequence.
ACCESSION   KCOD01000262
VERSION     KCOD01000262.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 749)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 749)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..749
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29375pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>749
                     /note="ultra-conserved element locus uce-5125"
BASE COUNT          239 a          142 c          163 g          205 t
ORIGIN      
        1 ggcgagaggc aacgacaccg agcaggagcc tcggcttccc cactgtacaa ataaacttta
       61 aggaacttgt gcacaaaact tacctttgac ttgcaaggag ccatttttca catagtactg
      121 agaacttgtg gtttggatac ttctgtccct aaacctgaca atttgaatgg ccaggaggca
      181 cacgtagcct gcaaaagagt caaatgaagt ccagcgtcag tgagattata tgttatgtgg
      241 tatataatgt tggatgtcaa ctccccaaaa ccataaaact tactttaatg gcaccacgtg
      301 actttttata gccagtgagc ctatctgtct gtgctatgga tgattttacg atctaattca
      361 tagacaaaac cctattcatt tggcacccaa atgtcatata gccggaactg gggcttataa
      421 agtttactgt tttataactt ttaagggaag gcatcaatgt aaccagtcag taaatgtgca
      481 aatctttagt tgctcttaga agctcagaag agttaaccat tcaagctctg atggggtaag
      541 taacattatg tttatagcaa actaattgta gcgaagaaaa aaaatcttta aagggtgaag
      601 agtgggaatg tggctagaga gggttactaa tagacgcaga gggcttggac atggttgtcc
      661 taaatatact taatgaaacc acaggagaaa ttctagagcg atgcaaacac accctggagc
      721 tcgcagcgtt ttaacaaagc acatgtttt
//
LOCUS       KCOD01000263             405 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 29481pyr ultra-conserved element locus
            uce-5989, sequence.
ACCESSION   KCOD01000263
VERSION     KCOD01000263.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 405)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 405)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..405
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29481pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>405
                     /note="ultra-conserved element locus uce-5989"
BASE COUNT          128 a           83 c           76 g          118 t
ORIGIN      
        1 ttcctttaca agtaccaaga attcatgtaa acagccgttt tcttggacaa tgaggaagga
       61 aaatcaactt aaaaatgtta taagttgcag tgcttcttgg tatttacagg cagaaaggag
      121 gcagctgcat tctgtcccag cttgaattca taaacctaac ttgatcgtct tctgaagaat
      181 ttatgaatca tggttaataa tcagttttag gcccttctga gggaagaatc acattttgac
      241 gctacaaagg tccactaaat agcccacggg aaatgaccct gcatcccatt aaatataaaa
      301 cctcactatt gtaggactct gtgtcagagg gaaaacattt cagtctctgc tcccttcaag
      361 tgtcagagag ctccctctgc ctaaatactt tattaagatt gaaga
//
LOCUS       KCOD01000264             732 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 29591pyr ultra-conserved element locus
            uce-7361, sequence.
ACCESSION   KCOD01000264
VERSION     KCOD01000264.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 732)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 732)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..732
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29591pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>732
                     /note="ultra-conserved element locus uce-7361"
BASE COUNT          218 a          148 c          147 g          219 t
ORIGIN      
        1 ttttttttta atcaaatagg tatccattag ggggctctcg aggtttaaga tgatcagcct
       61 tgataccaat ggcttcggag ctttacttcc taaccctttt ttttacagaa aaggtcacga
      121 atcgcctaca gtgatgaggt gcggaatgag ctcctagggg atgacgggaa ttcctcagag
      181 aaccaggtag gatgctaatc aagaagccct agtgggtggc tggagggtga aggaggtcac
      241 tggcacactg ggcttctcaa gctgctcctt aacagcatta gcaacaactc atgtggaagt
      301 gatactgttt aatgcaaagc tggggtctta atcaacttca aaatgtttct tggagatctt
      361 acatttaacc ctttaacttg tgatcactgt ctgctatctc aaaaaaaatc ttttcttctc
      421 ttttctttat tatttagtac ttaagaaata acttgaaaca cgctgtttgc cgacaaagcc
      481 aaggtcttca cctcaaacac atgtaaaagg aataaaaaag tacataatgc agctttgata
      541 ataatgcagt ataattaaat caacactggc aggcaaaaca aatgaaagtg cgctctcaga
      601 attaggcagt atcccactca gtttccttgt gtgattcctt ccctaaccag attttctctc
      661 cttgtaccaa aaccacaagt tgttctaata agagcgtgct ttcataatgc atgttgtact
      721 aggatgcaga gt
//
LOCUS       KCOD01000265             389 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 29699pyr ultra-conserved element locus
            uce-5259, sequence.
ACCESSION   KCOD01000265
VERSION     KCOD01000265.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 389)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 389)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..389
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29699pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>389
                     /note="ultra-conserved element locus uce-5259"
BASE COUNT           98 a          118 c           76 g           97 t
ORIGIN      
        1 tccccttgct catcacacct gcaagctggc cccaaactgg ctggatctca gagccacagg
       61 tgagcagggc aggcagcggc gtggcaaggg ttaagtccag ccagctgttg caagagtcca
      121 ttacctccca ccacattacc tcattcattt cttatatgcg gatggtttat tctcccatga
      181 gcaccctcgc tggcagacat ggctagtgta aagtcccctc cctcccctgt atttctctat
      241 ccatcacatt taacactctg acagtaacag tctataatgt ttctattcta caaaaccgct
      301 ctgtcaactc caggcttcca gagcagcaac tgaggaaaat aaataacatc aacgccagga
      361 ccgacagtat cacagcttgc tttctgctg
//
LOCUS       KCOD01000266             609 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 29808pyr ultra-conserved element locus
            uce-4808, sequence.
ACCESSION   KCOD01000266
VERSION     KCOD01000266.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 609)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 609)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..609
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29808pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>609
                     /note="ultra-conserved element locus uce-4808"
BASE COUNT          190 a          145 c          100 g          174 t
ORIGIN      
        1 aactgccaac caaaatgtgc aaacctacaa ttacgggtgc agcaactcca attatttgcg
       61 tagacatttt tgtttggtac aatcctcttt ctgtcaccaa taccctgttt gtacagatga
      121 gatccagctc tgtttagctt cacaatgcat taactagttc cagtggcttt cttgaaagca
      181 taatgacttt tcctgtactc tagtaaaaat atatccccac aaatcaagaa gaagcaggct
      241 cagactaagt ggttgagaag atttacattc tattgctaac tcagttatta ctctgctgaa
      301 aaccccatag catcaatata atgaatccct caacctctgc tgctagcaca atttttcttc
      361 ccaacctcat tggctcccaa ctttctgctt gaccttttac aatctgtgtg tggcagagct
      421 tcattacaac cttttaatga tgcacaaatg gcacacaaca ccaaggtcac agcatgtgcg
      481 agaacttctc caacacctcc tgagcaggca aagagttttc atttaaagag acagttcagt
      541 ggggaaacac taatatgcac gagaaaaaat tagtgttctg caagccatca gtgaccaaat
      601 gcataaaat
//
LOCUS       KCOD01000267             558 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 29913pyr ultra-conserved element locus
            uce-3850, sequence.
ACCESSION   KCOD01000267
VERSION     KCOD01000267.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 558)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 558)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29913pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>558
                     /note="ultra-conserved element locus uce-3850"
BASE COUNT          215 a           91 c           97 g          155 t
ORIGIN      
        1 gggcattgtg aagataagtt tctatgacat ttactataac tcttttatat taccatctgg
       61 ctattttata tgtagcattc agagggaaat ataaaaaaaa tgatgtaaag ctgaaattat
      121 ttccttgata acacttgttt taaacaccat gccactaaat agctaaaaag tctcaaaagt
      181 gaatgcataa agcatataaa agctacaagc atacttacat aaattcttaa gattaaagta
      241 ataacttcta gaaaaaggtg ggagaaaaca tactacaata aatctatttg taatggtatt
      301 tgggttccag caactgcttt cattgttctc aagtggctta catataaaac aatagatttg
      361 atgtatgatt tcaatccctt atggaaaact gttctatctt caagcagcct gtcaaacaaa
      421 acaacaaaaa agcagctcag cactaagaag aaataacata cttaaaaaca aagtaggggc
      481 accaaatcca tttcagacag ctttaaggac cggcttacca cagaaaatgg gatccaggct
      541 tggggaaggg aggagggg
//
LOCUS       KCOD01000268             716 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 30026pyr ultra-conserved element locus
            uce-2616, sequence.
ACCESSION   KCOD01000268
VERSION     KCOD01000268.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 716)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30026pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>716
                     /note="ultra-conserved element locus uce-2616"
BASE COUNT          163 a          187 c          211 g          155 t
ORIGIN      
        1 aggagcgaga acatggaaaa agagataaaa cgggaggctt gggaaagggg ggaaaccaaa
       61 gaggtggcac ttgtcaccag tgctgcacta ctcacaactc cagtatccca caaactaagg
      121 acgactcagg agagtagctg atgggataga tcccacccca tcctcccatg ctccacatac
      181 acccccagtc cctccccgcg ctcttcccct ctcactcaaa catcagactc aatactggag
      241 agtttctcat aaacatgccc gttgctggag ccattgaaag ccctggggtt tttgttgtta
      301 ggcacacagg ggttggactg gttccctata cagatgtcct tctggaaacg ggctggcaca
      361 gccccatgaa gggctgagac caccggcttg ttggtggtga caatggctcg gaagtctggc
      421 ctggctttgg gccctcctgc caccacaggc tgcctgaaga aataagattt gctgccgtgg
      481 agcaagcatt ggtcatcccc aaaagtgggg atgaaagggt tttgggtgac ccggtcgggg
      541 tagagtgact tgctgagcat gtagccccca ctgctgccgg ggttgttatg gtggtggtag
      601 ctggtggcgg gcactgagga cttgttgttg gcaaaggtgg tctcactggc tggcatctca
      661 aacatgtggg cgtaggggct cccctccaaa aagcggccct tgtccttgag gctgac
//
LOCUS       KCOD01000269             534 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 30134pyr ultra-conserved element locus
            uce-3153, sequence.
ACCESSION   KCOD01000269
VERSION     KCOD01000269.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 534)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 534)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..534
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30134pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>534
                     /note="ultra-conserved element locus uce-3153"
BASE COUNT          140 a          108 c          125 g          161 t
ORIGIN      
        1 ttcagtgcct ctgatcgtgc cattgtagga ataaggtgcc tccctctctc ctcccagtga
       61 actgcaaggc tctaaatata ggtcacccca ggcaattagg gaagagttgc tggttttgaa
      121 agataggcag gaagcccagt ttccaaatga gttatcaggt gagatgatgt ttggccccag
      181 ccagagtgat tgacaggggg tcttcatgtc cacagataca ttatttaaac atggggagat
      241 ataagacatc ttctgcacta attacttcga aggctgtatt aatcacaaga cactttaata
      301 ctcaatcaat acttgcattt gtcaatgacc ttgtaaatct cctcacttta actctgctct
      361 gtggcaaaag atttgacatc ttcggttttg tgcagctgtt gctcagtttt tgcaaagtct
      421 gttccagtgt ttaaagttca gtttcagaag tggaaatagg gaaaggcagc tgtgtagctg
      481 tggtctaacc actgggtcat catttttgat gtgaactggg ctccagctga aggg
//
LOCUS       KCOD01000270             824 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 30244pyr ultra-conserved element locus
            uce-298, sequence.
ACCESSION   KCOD01000270
VERSION     KCOD01000270.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 824)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 824)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..824
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30244pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>824
                     /note="ultra-conserved element locus uce-298"
BASE COUNT          233 a          190 c          143 g          258 t
ORIGIN      
        1 attggctcat tttctgaaac ctgagccttt aatagcatga agacctttta aaattcttga
       61 gttgctccaa attatttcca attaatacaa ggtcacccct ttcaatctgc aaggcaaact
      121 tttcctttat taatgtgttg atgggaccca gagtgcattc ctgtactccc agaatacaac
      181 tctgcagcag gcctgtgcac aattctgtac cagatgtgtc acattataag attttcagat
      241 tcagtttcag tctctctgtc gacagcctgt catctgttgg agtttatcat ctacccactg
      301 gtaccattca ttggttgcca aagcgaggca ggtcacagac aaatagactt agatctatgt
      361 tgccactaaa ttgaaatttg gcaacaatgt cagccagagc aaacagctgt tattttaacg
      421 acaagcaaac caattctgtc cttttaaatt atgttaatat aaaacagtgt cacttcacat
      481 atcagagagc tttcagttct ggagcccttt gaaggccacg cagactgaat ctattcagcc
      541 ttcatttctt tttgacaaac agatccaatg ttctaaaaat aacaagtgag taagagaggt
      601 ggaattcatg ataaaaaagc ctcctgacac tacatgcact gtaatctatc tcttccctgc
      661 ctacaagcag gcatatgttt gcaattgctt cttctcgtcc ccagttacca ttccattcct
      721 tgaggtctgg atttcaaact ggtgcagtta tcaatcacct agcaggcctt gtcaaacttg
      781 ctgaactgct ggcagccgta ctttcttaac atttgctgaa tttg
//
LOCUS       KCOD01000271             313 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 30352pyr ultra-conserved element locus
            uce-6451, sequence.
ACCESSION   KCOD01000271
VERSION     KCOD01000271.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 313)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 313)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..313
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30352pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>313
                     /note="ultra-conserved element locus uce-6451"
BASE COUNT          111 a           48 c           47 g          107 t
ORIGIN      
        1 atggctttta ttgtactcat tgttacatac ataaatcttt aaagtaatac gttttgtaag
       61 aaatggtcat aaaaatttac agccagtaac ttttcccctg tcccttacaa tgatattcta
      121 ctaaaaccat taaatggttc tcattaatgc cctttaaatg attgtgtaat gacccacaat
      181 cgcttgtaag tgaacaacca ttaaagaatt accagttctt agcatgcttt taagtacagt
      241 ttaaatacat gggaggtaac gtataatata ttagaaaaag tattaaattt gaaattgtag
      301 aaacagggtg gct
//
LOCUS       KCOD01000272             519 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 30460pyr ultra-conserved element locus
            uce-2665, sequence.
ACCESSION   KCOD01000272
VERSION     KCOD01000272.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 519)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 519)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30460pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>519
                     /note="ultra-conserved element locus uce-2665"
BASE COUNT          153 a           93 c          101 g          172 t
ORIGIN      
        1 tttttcccta aattatttga ttctgttgac acaaagcatg tacatttctg gacaaaatgt
       61 tataaaatat tctgacatat tttaatataa acaggaacat tttcggtgat tgcttggatc
      121 taaaatgttt ttccacttga catttgttta tacttcctag gaaagaaact ctatttatgg
      181 atagctgaat aacacaaata aacatgtgag agaactgaaa aatcagcttt gattatgcat
      241 gaaaatctac aatgtcattg tgtactcttg tgccgtattc tgattgcctg tttattttta
      301 cagagctgct ggtgagccca tggaagaaga gccagccttg tgaagtgcca agtcctctct
      361 gatatttcct gtgggtgaca tcattgtgta tgcaccctca gacatgtctt gtctgcttct
      421 tgggtggcac agatcagatg gaacataaac actgggcaca aaactctgaa tagcagcttc
      481 acttgttctt tggatggact tgaaagagcc cgaaagatt
//
LOCUS       KCOD01000273             622 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 30572pyr ultra-conserved element locus
            uce-3997, sequence.
ACCESSION   KCOD01000273
VERSION     KCOD01000273.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 622)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 622)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30572pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>622
                     /note="ultra-conserved element locus uce-3997"
BASE COUNT          213 a          111 c           94 g          204 t
ORIGIN      
        1 tcaaactgca atttgatggc aaactctgct tccttcagtt cagatctgtc ttgccacaaa
       61 cacagtagca tcatcccatt tgctccttgg tgaaatcatg aaacgcagat tttaccagtc
      121 atattaatta tacctttgca tacacccagc aaaattgcaa ccccaaacat gcagatcaag
      181 atcatctatt gaaatgccag gcataagtta ttcattaact aaaaccattc tgtaatttta
      241 ttgatatatt ttgtggagtt cacatatttt tgtacagcaa acataacact gtaggccaca
      301 agaagctgca gcactattgt ttaatagcag caaggtatat tttataatca gggtatgtgg
      361 ataataaata gtctgtttct ttggatgtga atgtttaaaa tgaagttctg ctgcagcttc
      421 ataatgtgat tgctatttta cagagcttat acacaaaaat atatatgcaa tctttttgtc
      481 tatattttat acaaatacaa cagtagtttg tgaatacatt ttaaagtaca tatacatgat
      541 aagcaactca atttcccata tcacaggata gcaaatttta aatgcaagaa acatatacaa
      601 attcagtctg gaatgcaggg tt
//
LOCUS       KCOD01000274             568 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 30681pyr ultra-conserved element locus
            uce-1474, sequence.
ACCESSION   KCOD01000274
VERSION     KCOD01000274.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 568)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 568)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30681pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>568
                     /note="ultra-conserved element locus uce-1474"
BASE COUNT          191 a          102 c           89 g          186 t
ORIGIN      
        1 attaaagagc aagtttagaa atcatttaac ctaaaggtta agtgcagaac agcatttgag
       61 cctaaagtaa cttaaccctt ctttaaaaag acctaagtgt aaagaataaa gacagtattt
      121 ttccttttcc ttttttttaa agaagccaca tgaaatgttc tccgagttaa gttttaccat
      181 tcataatgaa tgcagtctcg ccattcaaat gcgaccataa gtacacagaa gataagaatt
      241 taattaaatg tagattaaaa ccaaacagga aaacacactc gctgataatt ttatcccatc
      301 ctctggccat attttttata cttccttctt gttcttcttt gggctatagc ttatcaacat
      361 gccgatagta ccataactca ttacatctga tggtgctgct gaaatgtgca ggcttggtgc
      421 ttgaatttca gaggcactta aaatgcaaag catgtaaatg tctatgttaa atatattagt
      481 gtggtaatgt tagtgaaaag aaagtgattt cttacaaatc cttgtacttc acatcataca
      541 ttatcattgc ccagtcacaa actggttt
//
LOCUS       KCOD01000275             710 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 30788pyr ultra-conserved element locus
            uce-6301, sequence.
ACCESSION   KCOD01000275
VERSION     KCOD01000275.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 710)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 710)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..710
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30788pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>710
                     /note="ultra-conserved element locus uce-6301"
BASE COUNT          235 a          108 c          129 g          238 t
ORIGIN      
        1 gaggaaattg gagtgtcagg ataattctag tgtatgcaaa ctttacaaga tgaagccaat
       61 ccaaatgtta catccttaag cttcatagca gaagattaaa actaatgtat aagatcaatt
      121 ttacctactg tgagaattca aagataggta tatcttgttt ttaattcaaa tttttacttg
      181 atcattttat cacacatgca tgcactccct cacaagcaca cgtctgtgta ctgaattgat
      241 aaagaaagaa ctctggttaa ataatccact tttgtctgac aacggaatca gttatagagg
      301 tgcaaatatg cagaaagcta tttggaaatg catcctcgta gttgtcaggt tttattatgc
      361 aggaaggtgt catgtttgtt acgaagctga gtgcagatgg cagagtggaa gaaatggatc
      421 actaatttta acaatgatta atgaacagag atagaaaatg aattacattg gactatcgga
      481 ggcaagaaat atttttgaga aaattttgac tcatctgctg tgctgttctc tgtaaattat
      541 tttctgaaat tctatatgtt gtcaacagtt gactgcattt tccattactg tctatttctg
      601 ttcttaagta cttttgtgtt attagagaga cataatttaa aaataccaat acattcctga
      661 tacagtatga atgttccaaa ggcgccacaa atgtcctgtt tataatactt
//
LOCUS       KCOD01000276             698 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 30895pyr ultra-conserved element locus
            uce-1224, sequence.
ACCESSION   KCOD01000276
VERSION     KCOD01000276.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 698)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 698)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..698
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30895pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>698
                     /note="ultra-conserved element locus uce-1224"
BASE COUNT          214 a          133 c          125 g          226 t
ORIGIN      
        1 taacaatgct atgaatttgc actttctaca tttttctttt gcattcccaa aaactgaaca
       61 tttttagact ctgatataag caagcagctg taaaacttcc attgttcatg aaatcctgca
      121 tacgtacatc cccaagtccc ctcttctatt caatatatat gaaaatgcaa tttactgtac
      181 gtcaaatgaa aaatgcagtt ttcaaatgca tgacaacagg tgctagttaa atgatcagac
      241 actatttgtt acctagtctc ttactctcat ttgcagcatg ataaattgca ttttagcaga
      301 gcactgcgat ctaaggggtc ttgacatgct tttattgatt tgcataggtt atatgcatgt
      361 attcctgttt gtaggcaaat agtgccacga gtaaattcaa gtcactgtgc ctctgtttca
      421 agaaaattgc agtcatcaca ggggagccaa gatggagtga ggttgggtaa aagagacaca
      481 tgcagcccat tggaatctta gaacctctat taagatttat aggctgcagg attcttttgg
      541 gcttcaacat tattcttagt aaaccctttc tgtcttcagc tgtttataaa acctggcagc
      601 tttagcaaag acagaagctt acgttgtagg tagcacaatt taacataata gtgatagcct
      661 gtcctctaaa tatcctgata ctgattttga aagagaaa
//
LOCUS       KCOD01000277             723 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 31006pyr ultra-conserved element locus
            uce-7847, sequence.
ACCESSION   KCOD01000277
VERSION     KCOD01000277.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 723)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 723)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..723
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31006pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>723
                     /note="ultra-conserved element locus uce-7847"
BASE COUNT          206 a          149 c          134 g          234 t
ORIGIN      
        1 aagaattagg attgagacat aaaatttgcc tattggcagt gcagatgggt gaataattta
       61 tcatcatatc tcactggcca catactactg atgattgaca ctatgctgct ggtataaagc
      121 attttaccat cagctctcat gatttctaac tgagagtata ataagccaat ttacagaaga
      181 ctacagactg tgataacttc atcagaggaa agcagataag cagtgaaccc ttcgctaaac
      241 ctaaatacta atctgcattt ggttaaacaa gtgcttttgc agagacagct ggagtttatt
      301 cagtttcttc ctttatttct agagcctgag ggcatgttcc ctccagaggt tgtcatcatc
      361 aacagtacag ctgtacgtgt catctggaca tcgccttcaa acccgaatgg tgttgtcaca
      421 ggctactctg tctatgtaaa taaccagcag tacaagactg gaatgagcga gccgggatcc
      481 tttcttttgg cagatttgtc tcccttcacc gtgtatgata tacaggttag aatatctttt
      541 ctgggttgtg taacatactt actcatttac ttctacttgg atttccaaga agaatattgt
      601 ttttacacac attgtgtttg cactgatgct cgtgcaaggc tagcatattt tggtttgtgt
      661 acacatttca taacacaaat ttccattatc tctcaaagtg tcaaaactcc atttactttc
      721 cca
//
LOCUS       KCOD01000278             638 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 31115pyr ultra-conserved element locus
            uce-4919, sequence.
ACCESSION   KCOD01000278
VERSION     KCOD01000278.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 638)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 638)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..638
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31115pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>638
                     /note="ultra-conserved element locus uce-4919"
BASE COUNT          169 a          138 c          161 g          170 t
ORIGIN      
        1 ttctactttt ccagcctttc agccaaaccc tgatttccta ccatcttgcc accatggagc
       61 tgataccttt ccttgccaaa atgcaggggt atgggtctgc cgtagaagta gccaaggtga
      121 ttccttttaa accagatgga ggggaaacca ggtttgaatc acagaggatt tattccaatt
      181 aaagcagctc ttgtgcttag tttttggaaa acactagagc cataacaagg aaatagcaat
      241 tggaaacgtg ggcatttttc cagcagttct agggttaagg aaattgtaga ggggtgacat
      301 agtgacagtg ttccctattt ttgtgtgttg ccagtagcga gaagagggaa actttgattt
      361 ctaatccgct ttggaggagg ctccgtatca gggctgcaca gaaacatcca gtcaagcagc
      421 tcctttatca taaaggggat tttaattaaa actgttctcg catcatgagc gaaatgagcg
      481 tcagtgccag ccagccctgt actgggcatt tatctccttc aaaccacatt accagtaatt
      541 gctgcattaa atcaaagtcg agggagatta caggtctgaa ttgggcaggc ggccggtgcc
      601 agcgtgggga gctccgtgct gccgagccgc tgatacgg
//
LOCUS       KCOD01000279             412 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 31223pyr ultra-conserved element locus
            uce-1590, sequence.
ACCESSION   KCOD01000279
VERSION     KCOD01000279.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 412)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 412)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..412
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31223pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>412
                     /note="ultra-conserved element locus uce-1590"
BASE COUNT          127 a           72 c           71 g          142 t
ORIGIN      
        1 attttgtgat agctggtgac attgttgatc acatttttaa aattgagagt tagaatgata
       61 atatatactg caaaacacag attttaaaat ggttgttttt ccaatgcctg caaaattgtt
      121 ttattagggg actgcggaac acctgcctta aaatgtcgtt cagaacatct cccgaatgtc
      181 gttttcctta attgacttgg aaatggccca aatgtattgc tgaatgcagt ctaattaata
      241 ttaataataa atgccattat taacatcaaa gaacatctgg tgctcctgtt tactctgaag
      301 ccttatatgt aacacatttt gtggctgttt catcttgcaa acattgtgca gtaaacagtt
      361 tttgccatgc aggtcaaaac agacccctgt ccaagcataa tgcattatat tt
//
LOCUS       KCOD01000280             257 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 31331pyr ultra-conserved element locus
            uce-134, sequence.
ACCESSION   KCOD01000280
VERSION     KCOD01000280.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 257)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 257)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..257
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31331pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>257
                     /note="ultra-conserved element locus uce-134"
BASE COUNT           78 a           51 c           49 g           79 t
ORIGIN      
        1 agaagggggt tgtggaatca agcctaccat ctggttagaa cgacagaata atctacaact
       61 catgattagg tctaaggagt ggaatttcac tttaatcttt ttcattgctc gaaatttcca
      121 tctgcgcagt acggcacatc atttttcttc aagacaaatg tgctgttttt catgttccaa
      181 aattagatca gaagaaaacg attaatcatg tcatggcctg ggaaaggaaa caaagccctg
      241 atatttctct ctctctc
//
LOCUS       KCOD01000281             535 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 31438pyr ultra-conserved element locus
            uce-6458, sequence.
ACCESSION   KCOD01000281
VERSION     KCOD01000281.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 535)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 535)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..535
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31438pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>535
                     /note="ultra-conserved element locus uce-6458"
BASE COUNT          177 a           89 c           75 g          194 t
ORIGIN      
        1 aagatacact ggttcttaac ttgtacgtat agcattactt ccatgggaac tatgtactgt
       61 atcattccca gtagtaaagt tctagaatac atatagttta tctctgacac accaaaaata
      121 aaaatatgag ctgctatttc actaaagtct gagctccctt cccccattca caagcttgat
      181 gctttaactt catctctcat gctatgggga atgaattaca gaagcaatct atcctaattt
      241 gttaacttat tcaaataaca gttattatac ttaactatgc taaagattat ctttttggtg
      301 gcagattgtt tattttttga tgaggctaat tactgatttt ccaaaggtaa tttacattta
      361 ttactaatac atcttttaaa atgtgacaga taaatgttgt tcccataagt gtattatgaa
      421 aaaagttact atttaaaaac acattattta atttgaaaga taaatggcaa acaccattat
      481 ttttcctgaa gcacctgtgc tgtaagctca tttaaatgtg taattccatg tgtag
//
LOCUS       KCOD01000282             678 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 31548pyr ultra-conserved element locus
            uce-6804, sequence.
ACCESSION   KCOD01000282
VERSION     KCOD01000282.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 678)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 678)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..678
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31548pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>678
                     /note="ultra-conserved element locus uce-6804"
BASE COUNT          176 a          107 c          142 g          253 t
ORIGIN      
        1 tcagtataaa tgtatgtaaa ttttactgcc tgctctcagg ggtagtgtca cactaggtga
       61 ttttactagt cattgtaatg attcttttgt actgcaactc cttttaagac gtgatttgtt
      121 ttctgatgct ggtgctggga agtttttgtt gttatctgat atgtagaacc tgtctaccaa
      181 ccttttctac ttgaaactag gggtacttaa gtattgctct ctttcataaa attaagtcag
      241 taattactca tgcattcttc agtggtagct gcttagcaac cggttttccg tggataggtt
      301 agatcaaagt gctggcctgc aggttgtttt tccctttggt gggatgaagt gcagttgttt
      361 tgatgttagg tttgatggat ttgtttgcca ctgcattcat tagcttcaca tcaaaaaact
      421 gacaggctgt taaatgaaac tttggcttag attttcagct tgactgtttc aagacctatg
      481 tgaagatatt ttgtttttgt gctgcagcag cctcaagcag ttatgactgt ttcaaaggga
      541 agaaaagtta tttaatatct tgatttattt gggtacaaga gtcattgtct tgaagacagc
      601 cacgtccagc ttatgttatc caaacagtat atattttgaa atatttgaca aacattttat
      661 cagaggagaa atgatact
//
LOCUS       KCOD01000283             573 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 31656pyr ultra-conserved element locus
            uce-6926, sequence.
ACCESSION   KCOD01000283
VERSION     KCOD01000283.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 573)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 573)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..573
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31656pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>573
                     /note="ultra-conserved element locus uce-6926"
BASE COUNT          168 a          111 c          171 g          123 t
ORIGIN      
        1 gaccgttgcc tctggtgggc acgtattttt ctgatgttta tgaacctacc tgcaagcaaa
       61 agaaggggga tgaaaacagc tgatgaaggc agagagagcc cttcagccag tctcacccca
      121 aagatactgc tcatgcagtc agggagctgg tggaatgtag gagaaagaaa aatagaaaag
      181 gtagaaacga aaatatttga gagatgaaaa gaaattacca tacggcagga tcctgttatt
      241 caacctaatt ttcaaaggac tgcagctgtc gcactgagat aatctgttaa ttataacagt
      301 cattgtgttt tggcaatgga agcaggctct aaacaaggca aggtagtggg gaaaagagag
      361 gggaggcacg gttgtgtcaa aatgcgtgtc agatgctagc ttgaaatcta ggtgggcgag
      421 ccggccggga ggagggtccc tccccagtgg ggctgagctg tgccattgcc ggaaggaagg
      481 tggaagcatc cacaatgtcc tgtccagtgt ggggctaccc cccttgctga atccaggcat
      541 gcactgacca gaggaagagc tttgaggggt taa
//
LOCUS       KCOD01000284             725 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 31767pyr ultra-conserved element locus
            uce-3412, sequence.
ACCESSION   KCOD01000284
VERSION     KCOD01000284.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 725)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 725)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..725
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31767pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>725
                     /note="ultra-conserved element locus uce-3412"
BASE COUNT          210 a          154 c          147 g          214 t
ORIGIN      
        1 gatgagacag aatttctcca cagagatcct ggatggagtt tcttcttagt cttaaagctg
       61 gagataaaat tgcaggcaat gactcagtta atacagcagg gcctttctcc agaaacctgg
      121 ccagcccttc ccattacaga gctagtcttt ggctagctct ccaaaggctc agtgactgtg
      181 tacattaaaa atgctatcac cattatgggc tcttcactaa aggtacaaga gcatgacaaa
      241 tatatgtaat ttgcaaattg gctggtcttt tgcaataatt tagagacact agttagcggc
      301 aatagaaatc taacaattac tgatgtttaa ggtttgcatt gttgctctgt gaatatttca
      361 tgcataaatg aacttcccct ggaccaactg ctgtttctga tgaggcgctc tgaggcttta
      421 ttgccaaata cacagcgggg ctcccccaat gagccacata acggatgatg catcaccttc
      481 gcagcttaaa taatgcagag tatctgcatt ttatagagtg gtggtacact ttatttacat
      541 atcaactgag tggccagact gaatatgaag aaatatgtga aggaaggcac ttttaatatt
      601 tcatattagc aagcaccccg cctcagcagg ctgagatgag agcttatctg cctgattgtc
      661 tctctcgtct tgcaaaactg atgcaatttt cccactcttg tgaacttctt cagcattact
      721 gaaaa
//
LOCUS       KCOD01000285             688 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 31877pyr ultra-conserved element locus
            uce-7841, sequence.
ACCESSION   KCOD01000285
VERSION     KCOD01000285.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 688)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31877pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>688
                     /note="ultra-conserved element locus uce-7841"
BASE COUNT          226 a          129 c          114 g          219 t
ORIGIN      
        1 ctagaaacag tattatttgc taaaaatgca gtagctgcca aaagctatga tccatctaaa
       61 gcaaacatgt ttaagatgga aatagagtgt taatgctgaa gaaagacaga attgaatata
      121 caagttttca aagtgtggaa gcaactgcag tacagagtta atttgctttt catctttctg
      181 agcttgattg catttgcaga taagcaccta aattagagag aagtgcatta agacaataac
      241 agaagtaatc aaatttcaaa ctttctaatt aaacctcttt ttcctgcaga aggttattgg
      301 gaattcaaca ctagccttgg ttcacatgat agaacaatgg gaaaattttc cgaatggttg
      361 aacgctaacc ctgacaagtg tggagagcca actacaatac attatatggt agcataacct
      421 gccacccacg ttgctgagag aacagctttc aaacacatgc accgagctgt aaaaccacaa
      481 aatcccttat tacacattgt cccttactta aggtgaaata cactattcct ccttttacag
      541 atcttggtgt ttttttaaac cttcatctct gaagtttatt tagcagcttt tttcagactt
      601 tattttccaa atgccatttt tcctgttttg ttttctaacc aaaataaaat catgttttta
      661 tagtacacag tgaagcctgt tgtgcctt
//
LOCUS       KCOD01000286             784 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 31990pyr ultra-conserved element locus
            uce-3958, sequence.
ACCESSION   KCOD01000286
VERSION     KCOD01000286.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 784)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 784)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..784
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31990pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>784
                     /note="ultra-conserved element locus uce-3958"
BASE COUNT          198 a          206 c          181 g          199 t
ORIGIN      
        1 atctgcatga aaacagcaac tgctaattca gtggccaaag tgcatcagga ccctaatcta
       61 aaacctccca atccatccag ctgtctggca tttgctatta tagggcacca acagagaaat
      121 gaggctgtgg ctttatcact gcaccctggg tgacaacttg attttctgct ttcaccgcag
      181 gcagcagcag cccaacatga tggggctgtt aatttgtgca tttcatggtg tctgtcaggg
      241 ggccgggaga ggagggtttc aggggaaggg aatggagcat gtcccagcct cggaagcacc
      301 tgtctgcact gacggcacag agcacttctt attagcgtgc aggtctctaa atgcagcccc
      361 gggatgacag cctggcattc ccagcaccca cacagtgtga caggcgcagg cagccggtcc
      421 cattgtttgc ccttgatgag catgtcatta atggaaatgg aagaaagtga gggccacatc
      481 agtattcaaa tagcctccat cctctctgcc attcaaccgc ctggctcagg cggctgcaga
      541 tttccttctg cagctccact tacaggtttt cacagattta ttcccattgc atacaaatcc
      601 cctccatgtg gctctggccc catgacatgc acaatctcca gcatcatcaa aaataacgtg
      661 ggtgttcttt cccttcctcc ctttgtgaat cgcttaagta ccattaacaa atacttgcta
      721 tttactatcc aggaaatgga aggtgctatt tatttaaact tgaagcatca agcaaggggc
      781 tgat
//
LOCUS       KCOD01000287             652 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 32101pyr ultra-conserved element locus
            uce-618, sequence.
ACCESSION   KCOD01000287
VERSION     KCOD01000287.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 652)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 652)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..652
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32101pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>652
                     /note="ultra-conserved element locus uce-618"
BASE COUNT          245 a          131 c          114 g          162 t
ORIGIN      
        1 tttgataaac tatttacatt ttcagacttt aaaacatatt caaagcagca atagacacta
       61 gtttttcctc taaacgccca aataattacc ggccatgggc ccaggtaggt acctgcactg
      121 tatatagaat ttctacaaag aaaacctgcc cattaagtag ccagtgggtg ttaaacaagc
      181 agccctcgcc agtaagagct gcacccacgg tgttgctata ggaatcaaag catagtaccg
      241 ttgtcccaac agctctacac aaactttaca atttgaaaca gcagctagca tgtcagtcca
      301 gcatgtcagt gaattgtgct gattaaatta acatagagta caatctcaca atatacatca
      361 caaacaaatt acaatgtcag gaaataagag ttacagtaag ataagttatg tagtaacagc
      421 ttataagctt gtcttaatgt aataaaaaaa tttttacatg ggaaatacaa taatgaatga
      481 acataaatgc taagcattct agtttgctac aagctgaaga agggtacaag tttctggaaa
      541 gcaaaacaca aaaggaagac aaacggagaa tgcacactag caggtctgca atgtgcagca
      601 tacaaacagt taaatatttg cacattcccc atactccaag agcaccaagg ac
//
LOCUS       KCOD01000288             800 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 32206pyr ultra-conserved element locus
            uce-1368, sequence.
ACCESSION   KCOD01000288
VERSION     KCOD01000288.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 800)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 800)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..800
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32206pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>800
                     /note="ultra-conserved element locus uce-1368"
BASE COUNT          306 a          121 c          164 g          209 t
ORIGIN      
        1 agtatcccaa ttacataata cggtatatta aaataagtct cccttaatgt ggcgttgcaa
       61 agggtttgga gtccaggaac aaccttggaa tagggacaga gtgacctttt aaaaaaatga
      121 aatgaaatac actttcattt tccagaaata tgcatgaaag taaaaacttg acagcatgga
      181 agaacataag caaatatatc tttttatttg aagataaaaa gaagcagggg ctagataggg
      241 aaaggaaaaa acctgtgaaa aaaacggatg atgcagtttt tacgaataag cagcttaatg
      301 tatcttggca cccacagtaa gccttgtagg agctcaaagt gcctcaggca atctgtgagc
      361 agaatagcaa ttttattact ttgtcattaa accaatttca cagcagtatt gtttgttaat
      421 gagcagcggc aaacgagcga agatgtcaca cactggaata gcagtgagat ttgtgaccca
      481 agctcagagc actaagatgg aaagaccatg gctataaaaa aggaaatact ttgggatgaa
      541 atgcaaagtc tatacagcag agcttgtgtt tatgagctac cattttgcta agagctgtga
      601 gagaaataaa ggtctggaaa tatgcagtta aaacagggcc tataaaatta aaaccaaatt
      661 aaagtatagc agaggattac tgcacaggct gtactctaca aaatatattt taaaggtgaa
      721 atctaaatca gttttgtttg aatttggttg gtatttataa aattcaataa agcaatacca
      781 aattcaaaac caaagcagca
//
LOCUS       KCOD01000289             419 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 32315pyr ultra-conserved element locus
            uce-5332, sequence.
ACCESSION   KCOD01000289
VERSION     KCOD01000289.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 419)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 419)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32315pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>419
                     /note="ultra-conserved element locus uce-5332"
BASE COUNT          105 a          103 c           72 g          139 t
ORIGIN      
        1 ataaatcata aacttttccc attcacctcc aactttggct cttgctgctc tggagccccc
       61 ctctcagtat ctgtgccctg accctcttga gctatattat atcattccat tttgacacct
      121 tttatcaaac tttaatgaaa tgacccaggc aaacaaattg tcattaaact ttccatcact
      181 ttgtcccttg gtatcgtctt ttataaattg gacagcaaat gttgtattga tcttctcgtt
      241 cttgcagctg aacttgaaat gacccagact gcttgttgtt tatggcctgg agttgctttt
      301 ccttgacatt tccatccaca gcatgacatc tcttttgttt ttgtggagat gaatgaacaa
      361 gacatacgat accgagacat cctcgggcac ggcaacggag gcacagtcta caagtgagt
//
LOCUS       KCOD01000290             566 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 32423pyr ultra-conserved element locus
            uce-4539, sequence.
ACCESSION   KCOD01000290
VERSION     KCOD01000290.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 566)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 566)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..566
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32423pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>566
                     /note="ultra-conserved element locus uce-4539"
BASE COUNT          177 a          114 c          106 g          169 t
ORIGIN      
        1 actcattaaa attctctgca catctcatgg actgctgtag acagtgtaat aaataaatct
       61 atgagaattg aatgagacct gagaaaggaa agcactgtta ttctgcagtt gtagatatac
      121 aaatgtatat tacttcccct caaaaagcca taaagactgg cactcatatt tgctggtaag
      181 tcaatctttc tttcagacat caagagatga cctcttaaga cccaaagatt tatcaagtca
      241 gcagtttatt cccttaggcc accatcttca gcctcttcct cttccagtca cgtctattga
      301 aggactttgc aaagccccat gaggaaatgg actaatctac tgctttctga aggacaggaa
      361 tgattcctat ccttactgca ctttatggga tgagaaagct aataaaggga aggagactac
      421 atctattcgt gaaagattca gtgtgatgtt tgtattataa gagacagagt tggagtgctc
      481 cagctgtcaa tcagaaaagg agccttttcc cagtttcagc agacactatt atttttttac
      541 tttgtgggca caaaatacct ctgaat
//
LOCUS       KCOD01000291             552 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 32533pyr ultra-conserved element locus
            uce-6094, sequence.
ACCESSION   KCOD01000291
VERSION     KCOD01000291.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 552)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 552)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..552
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32533pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>552
                     /note="ultra-conserved element locus uce-6094"
BASE COUNT          159 a          120 c          107 g          166 t
ORIGIN      
        1 gattaaagta aatcctagta tttttctgca tgcctgcccg ctccctggct cccagagact
       61 gctgggtaac tgcctattat cccgtggttc cacttcagtg ccctccccaa taaaactttt
      121 catatcctta taaacgaact agattgccgt gttataaaca tttacactgt gctaacagat
      181 catctccgca catcagaatt ggctaaattc ccttttccag atgaatatat tgaaggagat
      241 tagagatatg atagcttttc agattgctga acccagagaa attagtttag tgagcattta
      301 cagaggctaa attggaacca ttaaatagtg gattaaattg atggtacttt cattgtctgt
      361 ccttcggtac tgctgtaaaa tcaattagcc gtcactattc cattctccat atagtgagat
      421 tgtcagcctg gctaggagct gcagagcctc acagcagtag caagcagtgt gaaaatacac
      481 ctattaggtg atgtggcatg aaataacatc atagggcaga atgtcccagt gagatttatc
      541 ccagccttat ct
//
LOCUS       KCOD01000292             665 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 32643pyr ultra-conserved element locus
            uce-4552, sequence.
ACCESSION   KCOD01000292
VERSION     KCOD01000292.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 665)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 665)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32643pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>665
                     /note="ultra-conserved element locus uce-4552"
BASE COUNT          183 a          142 c          139 g          201 t
ORIGIN      
        1 gctctcttct cacccagagt ttggctgcac agacttttta tttgcacaca gttgtcctta
       61 aaaataataa gtgactattt gcctgttcaa agccagaaac aagttgacca attgctgctg
      121 tgttttactt cagggtatcc atctaaaggc agggagagag aatcaggcta taatggtttg
      181 cctggctcga aaactccatt ttgggccgcg gagagtcata tttcagagag tattgatcac
      241 agtgcagttt gtgtttcctc acgtccatga tcctgtttgc agccctgtaa aataataaca
      301 gtactcatgt cagtaaggta attaccattg atctaacaca ctgtgacaaa tttttcagtc
      361 atgccacttg attcatactt aaagttatgg cactgctgac tgctccttaa ataattgaag
      421 gatgcccttt gtaaatcagc acactcttgc caaaaagtgg cagttccttc tttgttccag
      481 gccttgtttc ttagtttcat cagggatttc aaaattaaac agacagcttt ccatagccca
      541 catagttcac acttggagca aatatcatct gagctggcaa atcacttatg gcacctttgt
      601 tcgagaaaag cagaaactac agggaagatc agagtctctg tggctggggg gttgctagca
      661 ggtgg
//
LOCUS       KCOD01000293             681 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 32753pyr ultra-conserved element locus
            uce-2999, sequence.
ACCESSION   KCOD01000293
VERSION     KCOD01000293.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 681)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 681)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..681
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32753pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>681
                     /note="ultra-conserved element locus uce-2999"
BASE COUNT          204 a          113 c          120 g          244 t
ORIGIN      
        1 ctctttggag taaaatgcga atttttttca ttgttgcatt cattagtatc catatttcct
       61 tcttttgtgc cttagtttac acatttaatt taaatgagag caaatgtgtt ctggctgaat
      121 gttgttgtat atagcagaac tatgattaac tgtgtgatta attaccagtt gcaactaaac
      181 aattcagatg gatagtttca ttaagaaaac aacatggggt cattataagg ttctggtctc
      241 tgccccaagt cttaaaaaaa atatagttct ctgaaccacc aatctgaact ggtgataaaa
      301 tatcccaagt aggctcacat taagctggat aatatgcagg ctgcttgatt tgtattgaat
      361 atgtgtctgg tggctggaac ccactgtaat gaactagccc acaaatcacg gcttaatggg
      421 aatctactta tacatattgc ttaattaaaa gttgtgagct tattaacatg tgtctttggc
      481 actgagcttt ggggatgtaa tctctgtgca aataagacta ggttgtaaaa gttttataga
      541 ttgacaatga tattaaattc cataccttaa taacccatca ttttctcaaa gcgtggttcc
      601 cattctgtat ttattcaaag ctgtgacaaa ttgtttgttt gtaacccttt acttcatagg
      661 actttttctt tatctcagaa a
//
LOCUS       KCOD01000294             631 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 32863pyr ultra-conserved element locus
            uce-6282, sequence.
ACCESSION   KCOD01000294
VERSION     KCOD01000294.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 631)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 631)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..631
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32863pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>631
                     /note="ultra-conserved element locus uce-6282"
BASE COUNT          196 a          123 c          142 g          170 t
ORIGIN      
        1 gacagatggg gaggcagatg tacaatgcta cataaaagta gaaagactta tattctcttc
       61 tgcgaatgcc ttaagtgact gagcgcaggc agcaggcagg gaatgaagag ttaacctgac
      121 tgtcatttct ctccctcagc agctattgct cgctcagact ttcaagagga ggagagaatc
      181 actttgagat tcctctgcga aaatagtgtg cgccgaggca ttccttccgt cactcatgga
      241 tgctctgcca ggatttccca cctgagacag attgcgacgc atgttcgaat cactcatgca
      301 ggagaagcaa tacacaagtt cagtgtaaag ccactttaaa agctcatcgg gtgcatactt
      361 tacttgtaca aaatacctta ttcatgatgg agcagtgagg gcctaggtaa ttacttgaat
      421 caaggtggcc tcagaagtgt ttaaaggaca cttagagcat gaataatgca aaataatttg
      481 catctaaatt ttttaagtgt tctttattca aaaactaaaa tgcagttccg attaaagttt
      541 gatgagtgaa agctgagcac ttcataccca ctgtgaaacg tctcctattt gtggaaatta
      601 tttcagacag tggtaaaggg acaaaagaga t
//
LOCUS       KCOD01000295             624 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 32972pyr ultra-conserved element locus
            uce-7230, sequence.
ACCESSION   KCOD01000295
VERSION     KCOD01000295.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 624)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 624)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32972pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>624
                     /note="ultra-conserved element locus uce-7230"
BASE COUNT          208 a           92 c          144 g          180 t
ORIGIN      
        1 gtccacgcta gagccctttc attaccctgc tacgcggctg aatttatgct ggtcgaagtc
       61 ctggttttgt acaatgatta attgacctta acaagtttaa ggatgcttat ttgcacacag
      121 ttatgaagtg ttgcaatatg tcacaaatga gagcggcttc tattataaac ataatggcat
      181 aaacagtgaa agctggttat atttccttaa aagttcattg cagggaaatg gggaagcttg
      241 agaagctaaa caaatccagg caataatgga aatgtagcat gaaattactt ctgtaaacaa
      301 cagccattca ttatttgaac atttttcata agagagtcag cagacgagca ttgatgttaa
      361 agggtgtgta tggaggggag gaggaagcag ggagattatg aattttgaaa gaaatcttcc
      421 agggttatac ggacagacgt acatctgttt aaagggctat gtaaagcact gattgatccc
      481 tgaatattaa caatcgatgc cattttcttc attaacttct gagtggagca caaagaaagg
      541 tatatttgat ttaagggaaa gagaagggag cactatttaa tgttgatttg gtgtagtgaa
      601 taaccccaga gagaaatgta aata
//
LOCUS       KCOD01000296             590 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 33082pyr ultra-conserved element locus
            uce-2267, sequence.
ACCESSION   KCOD01000296
VERSION     KCOD01000296.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 590)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 590)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..590
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33082pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>590
                     /note="ultra-conserved element locus uce-2267"
BASE COUNT          167 a          102 c          112 g          209 t
ORIGIN      
        1 aattgcactg agagaaatta cctgttcttt cacagatggg gagaaagttg cagcctgcct
       61 cagttaagca tctttgactt ttaatttgtc accatgtagc tttgtttgaa attggccatt
      121 tttaccctat ttgtcgtttc tattggtaaa gacttctcgc agtatatctg ggttaacagt
      181 acgtaaagac tgatgatatg gagtggccat atttgcatgt gtctgtcccc ggaagggtgg
      241 actgtgattt tattggatgt ctgcagctat taccttgaag gataaatttt catttttcat
      301 ctattcttcc ccatctagac tgtatcagga ttaactgtaa ttccagtaag tgcctattca
      361 aacttttttt ccaccattgt aaaatatgca aactagaatg gcaaagattg tggacagctt
      421 gcaagcactt cataatttat taatgaaatg tgatgattaa ttatcactgt gtaaaaagtc
      481 atcatatttt ttgtccttcc catatgacaa caggttgtaa acaagcctag aggaaatgct
      541 gcttgtagta ctctagatag gctattttat ttacagtagc caaagaattt
//
LOCUS       KCOD01000297             378 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 33187pyr ultra-conserved element locus
            uce-3661, sequence.
ACCESSION   KCOD01000297
VERSION     KCOD01000297.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 378)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 378)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..378
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33187pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>378
                     /note="ultra-conserved element locus uce-3661"
BASE COUNT           97 a           78 c           79 g          124 t
ORIGIN      
        1 tattttaatc attttttgta aattgtgtaa tatgtcatga atctctccac cttgctactg
       61 atcatgcatg ttccacctcc tttttgtttt tgcccttctg tggtttcctt gggataggcg
      121 ctggctcagg caattaaaga agccaaagag cagcaccctg acatgtcagt gaccaaagta
      181 gtggtacata aagagacaga aatcacacca gaagatgggg aggattgacc acaggtaaga
      241 ggaccagatg attttcatag gcatttactg ggctggcatg ttgcagatgt tgttttccta
      301 ccctttaact cttcactttc tctcactggc atttcaagtt gctggttatc agttctgtat
      361 ttgaaagtaa accgcatt
//
LOCUS       KCOD01000298             216 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 33285pyr ultra-conserved element locus
            uce-3258, sequence.
ACCESSION   KCOD01000298
VERSION     KCOD01000298.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 216)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 216)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..216
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33285pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>216
                     /note="ultra-conserved element locus uce-3258"
BASE COUNT           74 a           44 c           46 g           52 t
ORIGIN      
        1 aactcgattg caaacgatat ctgtgatcaa agggccagaa cccctggagg agcttaggcg
       61 aacagcgtgg tggccgcaat tcttcctgat gatttgtaag caggaaagga cttttgacat
      121 gaaagacagt ttaaacagca caagaatagc aataaaccag ctgtaaaatg cttaacattg
      181 cccttgaact aatgcaaatt gttccaaaca attttc
//
LOCUS       KCOD01000299             793 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 33395pyr ultra-conserved element locus
            uce-2397, sequence.
ACCESSION   KCOD01000299
VERSION     KCOD01000299.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 793)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 793)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..793
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33395pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>793
                     /note="ultra-conserved element locus uce-2397"
BASE COUNT          239 a          109 c          161 g          284 t
ORIGIN      
        1 gtttgtatag cttctatttg aaatcttgaa gttcattttc tcttttggat gtagatgaaa
       61 agatttaact aaaataataa gtttgagttg tgaaattgct gtgattgaga aagtgatgta
      121 cccctttaaa ggtattagca taaagatagc acatttgttt attatgtctc aaaatcagct
      181 tctagtatct ctgccacagg taacaattga cttttcaggc ttcaagttaa tagccttgtc
      241 tcttgcttgt agggatcaat attagtatta attaatcacc attatcagcc ctaggatctg
      301 gttctatttg ttgttacatc agcaaaatat caatatagaa agtggactct ctgatcgtca
      361 tggcaacttc atctcttggg tcaaagaaag tttatcttat ctgtgcatgg agagtggcaa
      421 actgtttagg gatctagttt gaactctaag aacattgatt tagtttttgt ttgtgaatag
      481 aggctgaatt ccaatcacaa gggataggta agatttaaat attaatgccc acaggcttgt
      541 ctgagagggt gtcattacca ttactgtcag attgtctttt tgagatgaca caatggtaga
      601 ggagaattgt gtagtcaaga ctatttacag tttagtaatt tgtgcattgg aaacaggatt
      661 taaagtgaaa gtatggaaat tatgtagcat ttatgcagta atattacttt tcccaattgg
      721 ttagggtttc ttccactata gattaggaat tggtagaagg aacagatttt attatgcatt
      781 ctcgcttcag aga
//
LOCUS       KCOD01000300             586 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 33503pyr ultra-conserved element locus
            uce-5453, sequence.
ACCESSION   KCOD01000300
VERSION     KCOD01000300.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 586)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 586)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..586
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33503pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>586
                     /note="ultra-conserved element locus uce-5453"
BASE COUNT          163 a          120 c           90 g          213 t
ORIGIN      
        1 gtggcacttt aaaatacaga tgactgttac tttgtagagt ttattttgtc ccattctggt
       61 gtgtgtcact atattgtgac tttacattaa gaattaaaag taacctaata taaaacattc
      121 atttggatat tcgctctgtt acctcagtag ctgttgcttt ttcaatatga tttcatgctt
      181 ttatttgtta ttctcctgct ttagtagtac tgccagctgt actttccgct tcacacaaat
      241 tcaggtctat tccaattttc cacttccctg cctttaatcc cagcgttaca aacggaatcc
      301 catgctacac taatatctct tactcactgg cacagaagag atcaatattt taaaatgcca
      361 tatgttttat agatcaactg ccttgtgcat aggaatccaa tggcatccga accattacac
      421 aatatttgta agttacacga gtcaaggact gtgaggtctg tctttgcaaa cgctatcaaa
      481 tgtttgtact catctgtgaa atgttttaat atttttataa aacttaaatc cttgatcttc
      541 tctcaccata agccatcctt tgtagcaggc gtggtaatgt gaacat
//
LOCUS       KCOD01000301             610 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 33616pyr ultra-conserved element locus
            uce-2358, sequence.
ACCESSION   KCOD01000301
VERSION     KCOD01000301.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 610)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 610)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..610
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33616pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>610
                     /note="ultra-conserved element locus uce-2358"
BASE COUNT          181 a          125 c          118 g          186 t
ORIGIN      
        1 aaaagctttt ggaattcttt caggtgtcct gaaaaatggc tgatgatatt gatattgaag
       61 caatgcttga agctccttac aagaaggtga gtatgccagt gaggtcctgt ttaccttaat
      121 ttagcattat tcatgaaact actgctgaac tgtaaactaa catccctgga gccctcatga
      181 tttatcttac tggacatgca ttacatgtaa ctgtcaagtt aatatatact gttaatgtaa
      241 ttatattgtg cagtagtttc acttcagcgt gatgaataaa tgcccatcta tctctctttg
      301 tagacttgcc taacgatatc tcacctctac tcccatgaat tcacctttga ttccagtgtg
      361 aactgtcaat cataaggtag taattgagtg acgtatcgct gtaccgtggt ccccaagaaa
      421 cctacccacc aaaacaatcc taaaaccttt cctctgccaa gtctagtttg gtatagcaac
      481 aaggtgaatg cagtggtttg ggaaaacagc agggttccaa gaataacctt ttcaccagtc
      541 ccatggcaag taaatatttg aacaatctgc tcagtgcgag aagagtggga cttgctttta
      601 atgcagaagg
//
LOCUS       KCOD01000302             405 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 33725pyr ultra-conserved element locus
            uce-3675, sequence.
ACCESSION   KCOD01000302
VERSION     KCOD01000302.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 405)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 405)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..405
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33725pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>405
                     /note="ultra-conserved element locus uce-3675"
BASE COUNT          113 a           83 c           64 g          145 t
ORIGIN      
        1 tttccttccc tcttagcatt tcatgctttg tgtcatttga taatatacat gactgggttt
       61 aatactcaat cgtttcccaa atccaattta acagggttta atttacatga tgatacaatt
      121 tctcacacca gaaagcgtag taacccttct tctttggagg ttaatggtga tctagcttaa
      181 agcccgaaag ataattacaa ggaatgtgct tcaggtgaca aagtattttt gacaacccca
      241 gactgctgat agctttttaa ttatacttct tcccaccata ggaaacagta tgcaaatagt
      301 ctgcaggcat ttttatttat ttatttttta gcaaattgct acgcactgta atcaatattt
      361 taaccggctg ctaccccagg ctctgtcttt cttctatttg gagca
//
LOCUS       KCOD01000303             540 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 33834pyr ultra-conserved element locus
            uce-2051, sequence.
ACCESSION   KCOD01000303
VERSION     KCOD01000303.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 540)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 540)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..540
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33834pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>540
                     /note="ultra-conserved element locus uce-2051"
BASE COUNT          163 a          103 c           96 g          178 t
ORIGIN      
        1 ggaggctatt tgcttgaaag ctgttctaaa taataggatt attctcatct ttcatttagt
       61 ttaataatac actacataca tttgtcaatc aaattagaat tactgtcaga ccataataat
      121 gcattttagt ttagccaata tcagtcagac ctgatttatt tgcttaatac aaatctaatt
      181 gactttcagg ctgctcgtct cttttcagct gttaacagac caagtacatc tttaatttcc
      241 aagaccgatg gtttggtagc agttgagagg aagaatgatt tgcataaggc cccagaaggg
      301 tgccaaaact cttcacgctt taaacaacag cctttattat tctgtaagtg gatgtgttga
      361 attttcatgc ttttgtttcc agttcagccc tgacagaaag aataaagtag attttgccag
      421 cacccctgct gtgccctgag ggagaaattc aatgtgcctc atttgtctta attggagaac
      481 cgcccttagc accagctttt tctatgaata tattagcata acagacagaa aagtctaaga
//
LOCUS       KCOD01000304             687 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 33940pyr ultra-conserved element locus
            uce-7141, sequence.
ACCESSION   KCOD01000304
VERSION     KCOD01000304.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 687)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 687)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..687
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33940pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>687
                     /note="ultra-conserved element locus uce-7141"
BASE COUNT          193 a          152 c          153 g          189 t
ORIGIN      
        1 ctggtatttc agtataaatt ttatccaact gcaaaaggaa agtaactcat tatcaagcag
       61 ctcagtaagg ctcacactac tgaaggaaat aaagttttac gacaagaggg tctctcctct
      121 ctccctgtga gtgagaaagt gagtgtaaga ataagacaga aagggaaggc tcaggagtgc
      181 tgggtgaatt atagactgcc tctcaagatt cacagctctt cgtggtagga ggttaatatt
      241 ctcacatgtc attaggtctg ctggctctac tgatggctca ttgaatcagg cagcaaatta
      301 tttcctcatg ctgcagagga caccacactt caaagggaag gagccagggt caagacggct
      361 ctccagttcg attaatgagt tgggatcagc agaggttgcc tgtaggtaag aatgtgactg
      421 aagcttttga caaagctgac tttttgaaca ggacttgacc caggcccctt ctccccacca
      481 aatcttattt ccaacatttg cctctgactg acctgctcag gcctgttggg atagttttga
      541 cctcctcagt ctttgttacc agacacagga gctgtctgcc tgtatttgat gtgtctctcc
      601 ccaaaggcca catcagctta tccaggctca tcagaatact tcagaacagt atagcaaaat
      661 aagatagagt tcattcattt cagattt
//
LOCUS       KCOD01000305             953 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 34051pyr ultra-conserved element locus
            uce-1425, sequence.
ACCESSION   KCOD01000305
VERSION     KCOD01000305.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 953)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 953)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..953
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34051pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>953
                     /note="ultra-conserved element locus uce-1425"
BASE COUNT          297 a          155 c          190 g          311 t
ORIGIN      
        1 ttttgttatc tgaccacagg gtatgaagtg tttttaattt ttctgattaa cttcaggctc
       61 ccaaattcaa gtagaagcat atttgtgttt tccatgtgag atcctgtacc ttactaatgg
      121 atgagtatgt ttgtggtact gtacaaggat taatgaaatc tgctgctgct gattgaccac
      181 tgatggtaaa tgtaattgaa ttagcagtgc actaaaataa atgtagacaa aataaatata
      241 gacaagaaaa tctggtgaaa gcttctgtaa tgttttagat taataggcat acagaattct
      301 tcacattttt tattacgttg tccctagatg aattcaaagt aattggggtg gttaatttta
      361 tttacacaga gccgttcaca gcgcattaaa taatagagat aattgaacaa gaattgtcaa
      421 gtgtgtactg atatcagaca tattacagaa gggaatgtgc ataaaacttc atttctatgc
      481 agccattgtt tatggtaatt aagtacacag atttatccct tggttgcctt ccaagcttat
      541 ggcaactgct attgttgtgc tccattaata tgtaatcagg aaatagttta attttctaat
      601 ctgcagtttg agaattcact ttctaacaac tcttaattac tgcattgccc taatgatgct
      661 catggttagg aaaactgaac caataaactc catggaagaa gccagagggg attatacttc
      721 cagaggtggt gcttacttaa taaacttgtt atgccttcac cagagggagc tcagtgtcct
      781 tcaaaagcaa ctaattttat atttcagagt tgtacatacc cacggtgcga agagttaacg
      841 cgcagcgtgc ggtgggggtg actgcaaacg tgattcacta gagaaccaga taagcgattt
      901 tttcctactg tatactaatt ctggagttta attgcacagg aaataatgca ggt
//
LOCUS       KCOD01000306             560 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 34160pyr ultra-conserved element locus
            uce-373, sequence.
ACCESSION   KCOD01000306
VERSION     KCOD01000306.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 560)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 560)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..560
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34160pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>560
                     /note="ultra-conserved element locus uce-373"
BASE COUNT          198 a          102 c           96 g          164 t
ORIGIN      
        1 aaatattaat gttgagaaag tggttactct attaaggagc catcctatgt ttagatttta
       61 atattgatct ccactatttg ggaataatta atcattctgt aagaatctgc atataataca
      121 atcagaagtt tagcatcttc cccacaataa tgtcataaat ttatattttg acctattcct
      181 taaggcaatt tagttattcc aacagaaggg ggaaaagggg ataccgccac tttaaaagct
      241 tcaatctctt tgacattgct ggcagtgtat gggaacatta atgcatctgt catgataaca
      301 agctaagaat aacatctaga catcaaaccg agcagagaat ccatctgaag tgattcattc
      361 agatctgtct cattgattta ttaaacacag ggcaacatct gcagcctcac agagccgctt
      421 ggcgaaatta atgcaagatc aattcaaatg gaaaaaagtg caaaagagat aaatcaaaac
      481 acaatttgca tgcagttcca caatcaggct tattgggtgc aaatgctcaa ttttcctccc
      541 aaagcaaatg agtttaaatg
//
LOCUS       KCOD01000307             682 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 34267pyr ultra-conserved element locus
            uce-5315, sequence.
ACCESSION   KCOD01000307
VERSION     KCOD01000307.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 682)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 682)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..682
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34267pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>682
                     /note="ultra-conserved element locus uce-5315"
BASE COUNT          194 a          136 c          135 g          217 t
ORIGIN      
        1 agcaccattt cattctattc atatatttca gttcatgtaa agtagtagtg gaattttgct
       61 gacttgcccc agctattttt ccagtgtatt tatatgtaaa atcacacaaa catgttatgt
      121 ggatggggtt atatatgaaa atcaatatta aattcatcat ctttagctgc tacagaccac
      181 agtgaacact tgctctctaa tggttaaatg ccctttggat ctgaagccct ttgatttatt
      241 ggaagaaacc tgctgggcag aacatactgt ggagctgatt aatgtcagct tctgtcatca
      301 gtttccactt agattcttgg ccagctctga catctcctcc cttaaggatc cagaagaatt
      361 tgaggactga tccaagagct ttactggcat gggatttgca gaatgtggtg cttgcaaaat
      421 aaggaagatg aatggaagta aaattccatg ttctctactg gacttgtttc tttaactcat
      481 ttctctggag aaagagacca atgccaggac cacaccagca agggaaacaa atcaatagca
      541 tgttcactgg ttttgttaca gatgtcttgc atttcctttg ctgctttata tgctcccttg
      601 tagcctgtca aactggaaaa tgactgcagt gagaatgcag agctaccata gctgtctaga
      661 tttacactca ccattgtaca gg
//
LOCUS       KCOD01000308             495 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 34375pyr ultra-conserved element locus
            uce-6894, sequence.
ACCESSION   KCOD01000308
VERSION     KCOD01000308.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 495)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 495)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..495
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34375pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>495
                     /note="ultra-conserved element locus uce-6894"
BASE COUNT          173 a           91 c           80 g          151 t
ORIGIN      
        1 acctccacaa acttttacct gaaggacaaa cagctgcttc ttacaaaaaa ttatagctgt
       61 ccctttccaa tatttgaaaa tgaaaatgtc tttaagacat gcagaacatg aatgcaagag
      121 ctggtgtgat agcagagaac cttactgcac ataattaaca gacacataat gtctggttac
      181 tagtaatttc cttctagctg agtaaggaaa taatttaatc atgttgatca aatgaatccc
      241 atgagcccag tgcaacatta tgctccctct ctaaatccgt attaactgat aagagtctac
      301 ttcgtgaaat catggaactc aaccttgttt agataaaaat attggctttt agtaattggg
      361 ttaatcaagc atttcaatct aattcctggt gctgacctca agaaagaaat aatgttcttt
      421 attgaagcaa agtaaaattg catattccat gttgctctgt tacaacagaa gaaaggtatt
      481 tctataaaga catgc
//
LOCUS       KCOD01000309             592 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 34483pyr ultra-conserved element locus
            uce-4431, sequence.
ACCESSION   KCOD01000309
VERSION     KCOD01000309.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 592)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 592)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..592
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34483pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>592
                     /note="ultra-conserved element locus uce-4431"
BASE COUNT          169 a          115 c          109 g          199 t
ORIGIN      
        1 ttttaaaatg tttatttagt attctttctg aatgggagta tttaaagtta tataataaga
       61 agtgctctga actgtcatag tgaagcttct gggataaaga agcctaaaat taggacacta
      121 tacatgtaat ttacattgac ttaaaaattg tatttctcca tagagcaaga ttttttaaat
      181 atttatctct gaataattaa taatgtatga ctccttccaa actacaacac gcctatcaat
      241 ttccattttg aacatgcaat tggtcacttt ttcgccttga ttcatcttgc ctggctgcca
      301 accaaatttt gcctctgtgt accttcttga cactaataat gactgagttt ctgttcgttt
      361 gcgtgcaaga tttcccaagc ggcagtttgg ggctgggata aactatctat catgattgcg
      421 tacaactaat ctgcctcaac cccaatgatt gaaattgcat ttgacaattc acctctcctt
      481 ggcgtgcctg aggtgaacat agctacagac catccccgga agggagctcc tccatatgtt
      541 ggggaggatc cttttatttg tgtcaggaga caagcatgta taggcagaga tt
//
LOCUS       KCOD01000310             382 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 34592pyr ultra-conserved element locus
            uce-7067, sequence.
ACCESSION   KCOD01000310
VERSION     KCOD01000310.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 382)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 382)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..382
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34592pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>382
                     /note="ultra-conserved element locus uce-7067"
BASE COUNT          124 a           65 c           77 g          116 t
ORIGIN      
        1 ttatgaccct gaccatgttc atactcaagt gaataaacat ttcagattag cacttcactc
       61 acataaagca aaaagatttt tgggaaagtg aacattcttt gagctttgca gtcacggaat
      121 ctcacatatg gaaattgcag ttggtcttaa tctgctttca gaagactggt acaaatatta
      181 aaaagtaatg aagtaacaag attgtttgtt aatgccacat aaaagttcta attatgcttc
      241 atttcctgcc taagctaaac ccaagagaca ttgcctaatt gcctcgcttg aaatgggaat
      301 agagctgcag tgcttgatgg atttgtttaa ggagttgtgt gccacataag gtctttcaaa
      361 gtgtggcaaa tgaaggagga ct
//
LOCUS       KCOD01000311             458 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 34699pyr ultra-conserved element locus
            uce-3400, sequence.
ACCESSION   KCOD01000311
VERSION     KCOD01000311.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 458)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 458)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..458
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34699pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>458
                     /note="ultra-conserved element locus uce-3400"
BASE COUNT          125 a          103 c          105 g          125 t
ORIGIN      
        1 gcggccacgt cgcgagcagc cagagacggc cttaaataat gccgccgcgc gccgccggct
       61 acacccggag tctgataatt ttcaaagcta ttggcaacct gggaattttc ctgccttatc
      121 gccggggctc agctaacttc actaacacta atcagagctg gaatcattcg ttcaaggatt
      181 gcatgatcat gtttttcttt agcggtgaca gctgcctgag ccgcattagc aatgcagatg
      241 agtcagccta ataggttaat gcagaacacg cgaaaattag gtttaatccc cagtgaaata
      301 atctaacatt ttcacatttc ttgatgttgg gatagagaca ttggtggtga ctcaattagg
      361 tgtaatgtag atcaaagcaa atttaccttc tggctgaacc ttccccacag tttagataga
      421 agaatataag ggttctttac taattggcca atggctgt
//
LOCUS       KCOD01000312             732 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 34804pyr ultra-conserved element locus
            uce-2936, sequence.
ACCESSION   KCOD01000312
VERSION     KCOD01000312.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 732)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 732)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..732
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34804pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>732
                     /note="ultra-conserved element locus uce-2936"
BASE COUNT          247 a          118 c          143 g          224 t
ORIGIN      
        1 tgctgcctag aaaccataag tttctaaagc cacagacaaa ttctgtagag taactagttc
       61 acaaagttat gaagcatttt gtctcctctg tccttaattg ctcttggtaa acactgattt
      121 ataatccttc tagcaaagtc agtgacccag agagaacagg agaaacaagg gtaaaaaatg
      181 aaattgattg aaacaaagca tgaaactgat tgatattagt cataattaac acatctctag
      241 tcatttaaca gattcttctt gttgcatgtt ttggtacata agactaatct atgttttttt
      301 tatctgatgc attagaaaac cctaggagag aagatccaag acacaatggt agggcacagt
      361 gggttaggtc cacgtgacct gctctcgcct gaaagcggca gcctggtaag gcagctggag
      421 gtcaggatca aagagctgaa agggtggctg agagatacag agcttttcat cttcaattcc
      481 tgtctgagac aagaaaatga aggaacaatg aatgctgaga aacaactgca atattttaag
      541 gtaataaaaa aacaatcata gcttttgtac agaaacttct ttatggtggg ataaaatatt
      601 tatacataat gcaacgcatg tatatattta atgatgtttt catcttcatt tgtgttcatt
      661 catgtttatt ttattgaatc cttacaataa tattgatttt gtaaacattt tgcaaaagac
      721 ggctttagag gg
//
LOCUS       KCOD01000313             592 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 34915pyr ultra-conserved element locus
            uce-6934, sequence.
ACCESSION   KCOD01000313
VERSION     KCOD01000313.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 592)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 592)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..592
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34915pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>592
                     /note="ultra-conserved element locus uce-6934"
BASE COUNT          169 a          113 c          126 g          184 t
ORIGIN      
        1 aatctattta ctccgtaact aaagccactt ctatgtataa acatgtttat ggttttggta
       61 gaaacttttc attaggatca cttaactgac tgaccaaacc tgcttgctga aacattgctt
      121 ttgagcccgt tacaggcccc actgctgtaa gctggaagca tagtacttgt tgcacccatc
      181 acattttaaa tcagatgtga gtgtacaggc tcttgataaa tgtgctgact tgggagagat
      241 ctgtctggtc tgttcattta gatgatgagg taaccgtggg gaagttctat gccaccttcc
      301 tgatacagga ctactttagg aaattcaaga aacgcaaaga acaaggactg gtggggaaat
      361 atcctgcgaa gaacaccacg attgctctgc aggtgatttt taactaacca ttttgtgagc
      421 ttacttgaaa tagcaggtag atgaatattg atgattgtgc aatgcatttt gtttagcggg
      481 gacacttttg gcccttattc atcagaaacc taatcctgct attcaaggta agtgcttctc
      541 tatggattac ccaaacagta gcaatggtta taaaatttct tagcaggtct ag
//
LOCUS       KCOD01000314             647 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 35026pyr ultra-conserved element locus
            uce-6204, sequence.
ACCESSION   KCOD01000314
VERSION     KCOD01000314.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 647)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 647)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..647
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35026pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>647
                     /note="ultra-conserved element locus uce-6204"
BASE COUNT          182 a          115 c          129 g          221 t
ORIGIN      
        1 aagatttaaa cttagattat ttctaaacgg gaacggctgg gcttattttc tgctcagagt
       61 tattcagcgt tttacaaaga aggtttatgg agccgcttaa aactaagggg ttgttgttgt
      121 tgttttgcaa tgtgtgggaa atacttttat gttcacactt caccccatga atagggataa
      181 taggttcggg atcctcattg aaatttgaag tttttaaaca gaaattccct aacttttgct
      241 cgttttctca acttttttcg taggaacaat gccaacattg aagccctcgg ttggagtctg
      301 cacagttgga gatctttggt gccattttag acatctttgg atttcatcaa tcaaactgac
      361 tgcaattttc cataaaaacc ctgaatttgg gtcagaaagt gggcaaagca gataaagatc
      421 gttcgagctg tcttataaga tgataaatag atatcctttc agtccaacaa tgcaagaagt
      481 gcagttttgt aattcacttc cattggtttt gaatgcagtg agtcgaaaca atttatacat
      541 gttttcccat ggttagaaga tgtctttaca tacttgtcaa tagtagcttg accttttccc
      601 cactgagcta cgaagaggtg cttttttctc ctttttccag aaacaga
//
LOCUS       KCOD01000315             436 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 35136pyr ultra-conserved element locus
            uce-4423, sequence.
ACCESSION   KCOD01000315
VERSION     KCOD01000315.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 436)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 436)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..436
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35136pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>436
                     /note="ultra-conserved element locus uce-4423"
BASE COUNT          122 a           86 c           72 g          156 t
ORIGIN      
        1 ttttattaaa gatgcattat taactttgct gtggtgtatt tcactagctg ccttctataa
       61 ttaaaaattt tctctccaat cctctttcct gcaaggagcc tgttgcctga agatttaatc
      121 cttcattacc agttaaaaca aaatcaccaa ttaggcacat gaacacgtct gtattaatct
      181 cattaaggtg atggcaccaa ataaattgga actatttttg tgcttttact gtgttcctat
      241 ggctttatca ggccctgtgg tcatatacaa agaccttgca gctcagtcat ttagagtcat
      301 tcggttgtgg actaaatgtg gcattaccat ctatggctga aaattgcttt cagcttttaa
      361 actgcactga ctagtctgta gttaatctta gatcattcac ttgcaaaatt aaatgagcca
      421 gaacgatcgt cttttt
//
LOCUS       KCOD01000316             596 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 35248pyr ultra-conserved element locus
            uce-2901, sequence.
ACCESSION   KCOD01000316
VERSION     KCOD01000316.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 596)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 596)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..596
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35248pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>596
                     /note="ultra-conserved element locus uce-2901"
BASE COUNT          173 a          104 c          141 g          178 t
ORIGIN      
        1 aaaattcaat gactggactg aaaaatattt actacattaa aatgtatgat tctgtatatt
       61 ctatgctatt cccactgggt gtgcacacac gtgccggtcc ccagggtgca gtttatagtt
      121 tgcatcattc gtcactgctg agctgcagca gaccaggcca gcacatcatt tgttaacagc
      181 gacaaagccg cgctcataaa cgccgacatg ttacattaat ttataggcac tgagtgactt
      241 attaaatgtg acgtgtgaaa tataacaggg cccggtatgg atgattaggt tttgggcttt
      301 gaattgttga caaggcaggg gtaatgaatt gcgggacaca agctagtgtg tttccccctc
      361 attagtcagt attagctgca ttaatagtaa taattggata tattcatcat ttaaaatgtt
      421 ttaataaatg tttggacagc acctgatcta ggctgtcaaa tattagactg gaaggtttgt
      481 gatgggaaaa aaattatgcc gttccttctg cagagattta tacagcctaa ggggtgccat
      541 ttgccaatgt cctttaagag gtaatgggtg ggagagagtt tgggaacaga cagtgc
//
LOCUS       KCOD01000317             451 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 35350pyr ultra-conserved element locus
            uce-4483, sequence.
ACCESSION   KCOD01000317
VERSION     KCOD01000317.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 451)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 451)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..451
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35350pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>451
                     /note="ultra-conserved element locus uce-4483"
BASE COUNT          161 a           68 c           59 g          163 t
ORIGIN      
        1 aattccattt aagaagtttg ttaaaagggc ctcaatttct cagggtgcat gggttataac
       61 tatttttttc aagcaccctt ttgaacttct tttcaatttt ctgtttttga tgatagtcat
      121 gctgacaact ttttttggtc catcaaattc tgtagtacaa ttacatgaat ttacttttaa
      181 taaattacca tctttgcata tatcagtcaa accatgaaga ctaaacactt gcaaataaaa
      241 tgcattatta atttaattgt cacagcctat ttagctagct tctattagta tttgccataa
      301 tatgcaatgt atcagagagc agaatcaaat tcaaaacata aagaataaac tgattatatt
      361 gtcctagaga aattaaaaaa tagcaagctt gcaaaattat aatcaaggca ttaatgtttt
      421 acataggtaa gaaaactatg taacttaatt t
//
LOCUS       KCOD01000318             663 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 35458pyr ultra-conserved element locus
            uce-6440, sequence.
ACCESSION   KCOD01000318
VERSION     KCOD01000318.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 663)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 663)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35458pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>663
                     /note="ultra-conserved element locus uce-6440"
BASE COUNT          196 a          121 c          157 g          189 t
ORIGIN      
        1 ggatgagtat ctgaccctgg agtaccttct gctgtctctg agaaccacaa ccttatcaag
       61 aatcacactt gtggcttctg tggcaaagga tgacaagaaa agcaactttg tccaccacaa
      121 tgactattca gaattgaggc ctggatttta aaacaaatgc atttggagca tagatgtgga
      181 aaggaggaga agcacaagtg ttgcttattg ggggccctgc agacagaaaa ttattgtgtt
      241 tctaacgcta ttgatttttt gcagcagctg atatttcaat ctgagtgcag catgtctgag
      301 agtctacgca cactgtcaaa aagaaatatg atagtgtctt aaaagattaa taatatcact
      361 ggtcctcagg aggcctgtct taattcactg gcctgttcct tggcatgtac tgtaatttat
      421 ctagtctgat ttgaatagca aatggcaatc ggctgccatt agggaaatag gcatcagtct
      481 tattgatcca ggatgggctg gattttattt aaggagagct gcaaaatgtt attaacttcc
      541 ggatgagagg ctggaggtgg agaagtgttc caaggcgggg tgaattacac tgaatcctga
      601 aagtcctgaa atagatagaa ttgctaccac ttcgttttca aagacagcag ttacttccag
      661 cac
//
LOCUS       KCOD01000319             655 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 35566pyr ultra-conserved element locus
            uce-1126, sequence.
ACCESSION   KCOD01000319
VERSION     KCOD01000319.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 655)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 655)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..655
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35566pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>655
                     /note="ultra-conserved element locus uce-1126"
BASE COUNT          231 a          118 c           80 g          226 t
ORIGIN      
        1 acaatgttct ttccaaaatg tcttcatttc ataactgcaa tacaatggat gtctgcatta
       61 ggccatttta tacatacatt ttattacttc tgcagaatat atatatataa aatgtacata
      121 taaaaaaatc agcacacttc aatccaaaag gggttacagc aacgagctta actctctgta
      181 tacttttttc tttaacagga tactttagta taacttttgt taactcagta gtacaagcta
      241 tctctgttct acatttttat agctacaaga gtgaaatata acctacaaca tttacatttc
      301 acatatcttg gtatacaaac agtacttagt gaatttgagc caaggaccaa gagactcttt
      361 aaaaattatt tcaccatctg atagagcttc ctgtaattta cactcagttt attctgcaat
      421 cttctaaatc atttaatctc atagtttgag tttaaatcca ttccaactgg aaatcctgga
      481 gaaacaggtt actgcaaact cttatgtata ctctatatat acaagttaag taacacagcg
      541 taataagact tagctattta tcctaaaact gatatacaca tatttcacta cgctagacaa
      601 gtcttaggat tttatttctt taaataaagc acaaatttag aagtagctgg taaaa
//
LOCUS       KCOD01000320             497 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 35675pyr ultra-conserved element locus
            uce-2802, sequence.
ACCESSION   KCOD01000320
VERSION     KCOD01000320.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 497)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 497)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..497
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35675pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>497
                     /note="ultra-conserved element locus uce-2802"
BASE COUNT          148 a           78 c          101 g          170 t
ORIGIN      
        1 agtagaacat taccactaaa gttattttca gaacatcata tggatttttc attgaaacat
       61 ctgtgttaac ttttatcatc cttgctctgc tttgtaattt tggaaacaga tataaagaat
      121 gagcaaccca gagcacagta atatagtggg cagcatcctt cataagtcaa ttgaggaatt
      181 taataatctc tttagaaata agctctgcag ctatgagaaa aatgtgtggg ttaaaggcct
      241 tccaattaag aaaggtttct ctgtggattt ataggctggt ggttagctct tcctgttcgt
      301 gtttccatgg caactgtcag gtagattttc tgctacttgc taggaagttg gaaatgttga
      361 gtctggttga gcctttcaat tcactgaagc ttaaatcaaa ttctttgcaa ggatctggca
      421 tttagcctgg gtcatttatt catatctaga agagaaatca attatagtaa tcagatgtgc
      481 aattattttg ggtagac
//
LOCUS       KCOD01000321             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 35787pyr ultra-conserved element locus
            uce-6859, sequence.
ACCESSION   KCOD01000321
VERSION     KCOD01000321.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35787pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-6859"
BASE COUNT          175 a          147 c          152 g          228 t
ORIGIN      
        1 acgattacac aggtaatttg tgtacacctt tataggtagc cataccagag ttggttttca
       61 gttaaccttc atacttggta gacagtttat ttcctagatt gatctccacc ctccctccct
      121 ctactccttg tttagttaat tcaacaaaga ctttttgcaa tctgtttgga gtttgtctga
      181 tgccgtggaa aagtagctgc tgatttattt ggttgctttt cgatttctgt ctctagcccg
      241 tcttttctcc tcctttcagc ggggatgtca gctgttatta cttcctattg atccctttgc
      301 aaagtgagaa gtgaactaaa attaatgtca attccactgc tcagatcaat agctggagtt
      361 attttaatct ggatttgcgc gaggtgctaa attaaaaaaa atcagcatag aggcagaaaa
      421 gtagcagctc ctcactccac ctgtgcccac tgccttccca gcacccaaat gttccctcca
      481 gctgattacc ctgcaatcca tattttaatt aagaaggtca gttagttttc ttatttttgg
      541 gttctgtatt taaacctatg acattttgac attgggagtg tattaacgat agattttcat
      601 aatgactggt ccgccgcagc ctaatctgtc cgtgctgctg gggggtgggg aggtgctggg
      661 cgagaaggga gcaagagaga acgaaaaagg aagtgggagc tg
//
LOCUS       KCOD01000322             786 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 35897pyr ultra-conserved element locus
            uce-1392, sequence.
ACCESSION   KCOD01000322
VERSION     KCOD01000322.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 786)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 786)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..786
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35897pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>786
                     /note="ultra-conserved element locus uce-1392"
BASE COUNT          247 a          137 c          130 g          272 t
ORIGIN      
        1 agttacgcat gtgcactgac agaagaatag tgttcaaagc acatgaaatt tacatttttt
       61 ccattgctgt aattgagatg ttgacaaatt ggagaatatt gatgagcctt tgttttaagt
      121 atttcttgcc aagtttgctt tattttttca tggtttgaac aatggtgcag cagcaatgag
      181 taataaggat agagtaaaga taactttgat ttcaatattt tgatgtgcca ataagaaata
      241 aattcttagg caaatggaat atgttgtttt aatcattagc tatgcatgaa agaaaaattg
      301 atgttgacat ctttgctgta aaatcgttgt aatggggcct tccttacaat tcatttttgt
      361 aaaattcatt ttgtacattt tgcagcaatt gaacaatccc tgcactgtga ataggcagaa
      421 ttcccagaaa tactgaaaca gttggcccag taactgctga gctcacactg cacaccacat
      481 gcacattaac catgatcatg ccagaaccag cttagctaaa tatagtcaaa ttttggtatc
      541 ctcccatcct ttcttttatt tctgtcaaaa aataaatgtt tgccgactcc agcaattaaa
      601 taaagaggtg tgtccctacc cactattcaa taagtagcat tcttcactat gcagttttct
      661 aataatcagg ctggtagcaa attcctcacc tttaattaaa ttagtgttta aaatatgtac
      721 ttgtattcaa gttactcacc tcactcttac cttttaatcc atgtaggttt gtatacttag
      781 atgtag
//
LOCUS       KCOD01000323             593 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 36009pyr ultra-conserved element locus
            uce-5361, sequence.
ACCESSION   KCOD01000323
VERSION     KCOD01000323.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 593)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36009pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>593
                     /note="ultra-conserved element locus uce-5361"
BASE COUNT          147 a          141 c          116 g          189 t
ORIGIN      
        1 ttttatggtt tatcctgaaa tgcattaatg aatttagaag ttttgagctc atttaactct
       61 tggagaaaga aacactggta gtctttgacc tcagtgattt ttttttccct ttctctccag
      121 gtttgcagct aagactgtgc acagtgggtc actgatgcta gtcacagtgg agctgaagga
      181 gagctctaca gcacagctca tcataaacac tgagaaaact gtgattggtt ctgttctgct
      241 gcgggagctg aagcctgtcc tgtcccaggg gtaacctgct tacatctgga cttcagaatc
      301 tggcacacaa caaaagtgcc tggcatccac tactgctgcc tttcatttat aataatagcc
      361 cttccatctg gcagagggga aagaatacac tcttgacatt cttgtcttct gctttagaat
      421 gctagtgcgt atctatcatg tatgtgcttg ctaaccaaag aacgtatatt ttacagtcag
      481 ttatctgcgc aatgtatttc ccatttgttc taccctagtc cttccctatc tctcccttcc
      541 cccactacct tccttcccca tcagtgttag tggacaaata caaagttcaa ggg
//
LOCUS       KCOD01000324             758 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 36121pyr ultra-conserved element locus
            uce-6379, sequence.
ACCESSION   KCOD01000324
VERSION     KCOD01000324.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 758)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 758)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..758
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36121pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>758
                     /note="ultra-conserved element locus uce-6379"
BASE COUNT          261 a          163 c           88 g          246 t
ORIGIN      
        1 aacaataaaa ttctttctac catgtcactc ttccttctta aacacacaga agcctcaaga
       61 aagctccagg cactctaaga aaagaaataa ccaaatacca ccaaatattt aattttctat
      121 gccggaaatg agaaacaggt gtaattaaaa taacactttt taaattaagt gacctctctt
      181 gaccaaccat ctgtgaataa ttcagatttt tttcccatta ttactgcaaa attaaaacta
      241 gggcatataa atgacgagat cctctttaac tatctttaag caccagcaat atatattttc
      301 caccagttaa aatccttaat gataccaaaa atctgtcaag cataactccc ccaattcatt
      361 tgcctgaaac catcaatatt ttatcatgca tttgcagttg gctttaattt aacagtccag
      421 gttactaatc aaacaaaaca cccaagtcat taaaagttag cgtgccattt agaaagtgca
      481 tttcacgttt attaaaatat ctttcatgga gccattagaa ggctaaagtt ttaattacaa
      541 tcagatattt agttctactt cagttatgct tttggcactc tcttgcaact gccttgatta
      601 atcttccaga cagagctcat ccattacctc ctgaaattat tttcctctta acttcttcat
      661 aattcatctt ttttcttccc tccaaacatg taagatgcat taaaaaggtg tgcacaatac
      721 ctgcctgaaa gataagtcat tagaaagatt ccatttca
//
LOCUS       KCOD01000325             484 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 36230pyr ultra-conserved element locus
            uce-6527, sequence.
ACCESSION   KCOD01000325
VERSION     KCOD01000325.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 484)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 484)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..484
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36230pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>484
                     /note="ultra-conserved element locus uce-6527"
BASE COUNT          162 a           78 c           83 g          161 t
ORIGIN      
        1 ccaggcaatg cccagcctgc aacactaaac tgtaatattg aacggtcctc agtatggtgt
       61 agacagaaat tctgttttgc ttttaaactg caagtttcgc atccattagc tacatggttc
      121 ataattagtg tttgggccaa acaaagagtc aatatgatgt catgtctaga caacatgtaa
      181 attaatatga aagcaattga gttacaaatt ctatactaat acaaattaat ctgaattaag
      241 tttaatccac agttattaac tgattaaatg tggctgttgg tagctacagg gtgctgactt
      301 ccatctgtga ttattaggga cacagcttaa tcactgatgc tgcacagttt aaagcaaatg
      361 tcatatacag tgactcttaa tgcttgttaa ttgaatgtaa catctaagaa tgaaaattat
      421 aaatctacat ttttaaaata tgtagaaagt ctaccttgat tttcataatt agcttctggt
      481 ttga
//
LOCUS       KCOD01000326             690 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 36335pyr ultra-conserved element locus
            uce-6997, sequence.
ACCESSION   KCOD01000326
VERSION     KCOD01000326.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 690)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 690)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..690
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36335pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>690
                     /note="ultra-conserved element locus uce-6997"
BASE COUNT          237 a          121 c          117 g          215 t
ORIGIN      
        1 attacaggtt tatagtttca taattattta atgctcgtta gacatatata tttaagcatg
       61 cttcttctga tgcaagatct cttgctaagc taatttggag tgactccctg ccaaatcaat
      121 atcagtcttc tggcaaatat tattaaatat ttgtttgata cctatttaca agtaggaaaa
      181 taattttgct gccaagggat tgtaaatgtg tgaaaaaaca ctctgacagc ttacttcact
      241 cactgtctac aagccggcgt ctgcatgcca aagttggaag actaagatga agaacataat
      301 taaggaaaca tatgaaggct agcacagggt ttgagattaa ttagctgcac gtcaataatc
      361 tcatcaatat ccgattaaca aatgacacat tgcccaatga aacatattga ttcattcaca
      421 ctccacactg ttaataaatt gaagctgctt tgctaaatga gaaagctgac aaaataatag
      481 cttcctaata cttctccagt attaaaaacg taaaattagc ccaaagtata cttaatttag
      541 cagcactgtc actacattta tgaagcttgt tagcacaata gcagggaatt tttatcacct
      601 aattgttaga atggacactg gatgtatgca aaagtagaat ggaaatgtgt ttgtttggaa
      661 cagaattctc ggtgacacaa ccttctgtat
//
LOCUS       KCOD01000327             846 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 36446pyr ultra-conserved element locus
            uce-1342, sequence.
ACCESSION   KCOD01000327
VERSION     KCOD01000327.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 846)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 846)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..846
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36446pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>846
                     /note="ultra-conserved element locus uce-1342"
BASE COUNT          267 a          149 c          155 g          275 t
ORIGIN      
        1 ctggtcctgt cactattatt gatataagga atccatcaac atatttttat ggatgattaa
       61 gaacggctga cctttccttt gcaggtacaa ataggtagtt cttcagaggc tgtaaatgaa
      121 tgacaagata attctatcca tttaatattg aagtgatgtt gatagtatca ttcttctcat
      181 gtttgaaacg ggaaagtata gagacctttc tccctcactt tgttctgctt tatgtgatgg
      241 attttctctc tgactaatcg ctgtcacatt aacctgcact atttcatcct tcagagctgt
      301 caagataatg acgataatcg aagtggctca ttgtaggtaa aggaaattat atgagcaaag
      361 taatatcata aaacagtgtt taaatatttt aatttcattt gtcagggctg ccccaacact
      421 tcattacaca tataaccatc tctcatcagt ggaattagtg cattattcat tactgttaat
      481 tattttcaca taatggctgc cctgatatat ttaacctcca cattatatct cagataatgg
      541 gcctgtaaaa ttgaattgtg tgaagagcgg agttctaaag ctcatttgca gaacatcaaa
      601 gaacaaagaa gaggaaaaga attctaaatg ggacatttca cccagctggg gccaaacatt
      661 tgtttctgtc tgatttgcat acagaaaata ggtggttcag aagtggttta acattgtaca
      721 tgctgtctgc tcctattaaa tagccaatta gaatttgatg tcctgagtgt tcaagacaac
      781 ttacaagcca atctattgtc tgaatggcaa cgagctaaca gaagaaagta gacctttttg
      841 aaggac
//
LOCUS       KCOD01000328             475 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 36560pyr ultra-conserved element locus
            uce-4349, sequence.
ACCESSION   KCOD01000328
VERSION     KCOD01000328.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 475)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 475)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..475
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36560pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>475
                     /note="ultra-conserved element locus uce-4349"
BASE COUNT          138 a          113 c          103 g          121 t
ORIGIN      
        1 tttagctttc atcatttcca gctaaatttg taaataaaac tatcaaatgg caccaggaga
       61 atctcctgaa atgctgaatg acgagcttat ctggaacggc agcacctgca gggttaatta
      121 agcagctcaa gatgctgggc ttcacaaaag tttttcctac tttaaggact gtaaacactt
      181 gtgctgaact agatgggcat ttgataagct gtacagcatg tagcaaactc cgagggatct
      241 ctagttaaca ctcaaattca gtgttaacac ttaacagaac agtggtaagc cgtgctgcca
      301 aggtcaactg cacagatgta ctaattgtat tatgagcttg acatctagtg gccacccctg
      361 gcagggcaaa gcaggcaaag gttaaatcag caagccttgt caaagcactt ctaactaccc
      421 accctcaggg agaggctttc tggcactccg cggtcccacc ttctggccgg cattc
//
LOCUS       KCOD01000329             902 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 36674pyr ultra-conserved element locus
            uce-70, sequence.
ACCESSION   KCOD01000329
VERSION     KCOD01000329.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 902)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 902)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..902
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36674pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>902
                     /note="ultra-conserved element locus uce-70"
BASE COUNT          280 a          192 c          167 g          263 t
ORIGIN      
        1 gacaatgacc tttcatgtcc ttggagctca ccatgacctt tcatctttcc tatcctccaa
       61 tggtctcttc taacaactaa aacgttaggc tgaattccag attgtcataa aaagcccctt
      121 cctttcgaaa caaaaccaat ttttacacca aggtggagga gaaacacagg tccattgttc
      181 ccgcacagat ggaagttaga gttactaagg caacagctct aatccctctt tttaccacct
      241 ttttcacatc attggcctat caagtgtgct accttttaac tcataagctc aaaagctggt
      301 agtctaactg actgccctaa ttagctacga ttttcacagt acagacaaca tgatgagcta
      361 atcgaaattt gcaaaataat gacgtacctc cagcaaatat tcctcctcct gaggcccagt
      421 cttagaataa caataatgag accattatta gaggagggca ttaaaatgct gcactgctgc
      481 taaacagaga acttaattgt tctggtcttg tccattgaat caacaaccta ttgttgtgga
      541 cttgaaaaat aaaggactgg agaatgggtg ccataatgat tggtctgtgc tgccatacca
      601 gcactctgta gaattgtttt ccttttgaaa ctcttgatgg actagtagtt ttgtttaaaa
      661 gtaatataaa agccaattgt ctgcataaaa agtcctattt attgaaatct ttagaagcag
      721 ttgcatggat ttgttcatga cccccaagat aaaaacatag agaccataat aatgctattt
      781 gtggcgacca ctgcttgtag tgacactgct tgtagataac gctgtcctgt ctagctactg
      841 caaaaggaag gaaggcattt cctttgcaga cagaaatcat ggcagaaggt caaatagtgg
      901 ac
//
LOCUS       KCOD01000330             580 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 36783pyr ultra-conserved element locus
            uce-2231, sequence.
ACCESSION   KCOD01000330
VERSION     KCOD01000330.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 580)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 580)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..580
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36783pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>580
                     /note="ultra-conserved element locus uce-2231"
BASE COUNT          194 a          108 c          109 g          169 t
ORIGIN      
        1 ctccattatg caagaaatat gttaggtttc ttccctagct atgcacaaat ggctgggaaa
       61 agctggatat agtcccatcc tataaacccg aatcagaaat aaattaaaag atttataaat
      121 tggaggtgca attcttcagc tacattggtt taaagatggt gaaatgaatg actaaagcat
      181 tcactcacag tgttttatga agcagatcta atgtgcaggt tttgtgacct gcagtgactt
      241 taacttctca gtaaatcaaa aagcttaaca aatattaaga tggcaaagat tacctgtgtg
      301 tgccagattt tatcttttat ccgttatcat ttaggaaatg aaaagcttga gtcggaaatc
      361 agacagccag tcacatgact cgggcggtct ggcagcccca caagacaaga acctgcagga
      421 gacacagaaa ctacacattc actgattagt ttttagtcct taagaaatgg ctcttttatt
      481 gttattattg ctagcaacca atgagcttta gaatcagagc aattcctttc taaattccac
      541 tgcaatgaaa attcattatc acaagctaga ggaagcagct
//
LOCUS       KCOD01000331             676 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 36894pyr ultra-conserved element locus
            uce-4736, sequence.
ACCESSION   KCOD01000331
VERSION     KCOD01000331.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 676)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 676)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..676
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36894pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>676
                     /note="ultra-conserved element locus uce-4736"
BASE COUNT          203 a           98 c          149 g          226 t
ORIGIN      
        1 taatgctact gtataatgca gtcacttagg ggtcttcacc agcatctgag agtgttggag
       61 tcacttagta cttagcttaa tgtttgattt tagcatataa attaaagaat atgtgtctgt
      121 gcttagatgt agctatatag ctggagagca agttcataaa aatgtctttc gtttgcttct
      181 cctttgagaa gccttttaaa atgttgcgca gaaacactta gagggttatc acaggtagag
      241 ttgtcagaga aaatggacat tgttgtttgg tattaaaatc atgtattcca gatgtgggca
      301 tttgttagtc agtctgctct aaaatgacat actgttgaat ctttaaaggg cttcagtttg
      361 ggaaagcaaa atatgattgg gcaaattgct aaaatattta aagtgcagcc tgttaaagct
      421 tttactgtga agagcatcac gtcagaagtt gtatgtggta aaagcaagta attggctttc
      481 catacttatg ccagtcagtc agcatggggc tctgtttcta tcccttctac ttcattgcag
      541 atgcctgtag gaactttggt atttgtttca gaggagtggg actggaaagt tgtgatggtg
      601 tcaaaaccca atttaaaatt aaattttatt ggtatagaca agagaaagtt tttgaaactg
      661 cacccaaaat ttaaaa
//
LOCUS       KCOD01000332             817 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 37004pyr ultra-conserved element locus
            uce-620, sequence.
ACCESSION   KCOD01000332
VERSION     KCOD01000332.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 817)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 817)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..817
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37004pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>817
                     /note="ultra-conserved element locus uce-620"
BASE COUNT          235 a          154 c          181 g          247 t
ORIGIN      
        1 tctcttcctc tctctacttt tccctcacag aggcatgtac atccatttca gaatctaatc
       61 acagacaact taaatctttc cagtgttacc cacattagta attgcaaaat aataaacatg
      121 acaaaattca gattaatagg gtatcctgca caacttggat ggtggggaga gccctctgga
      181 attctaagag taataggtct gtgtttattt ctcaaccaac ggcataatgt gactgattta
      241 caagagttta actcaagtgt taatctgaca gtgacgaaga gcttctcagt ggcagaatca
      301 cttacactat catattagtt gcctcctcta ttaaagcagt atggtcgata attggaatgc
      361 ttttatgtct agtggttctg acaaggctct ctttaggtca catatgggcg gtctggcttg
      421 ctgcacagct gaacagtggc aaatgattta aactgagaaa gtattgttct cctcgtatta
      481 tggagcaagg gcagttcaag gaaagtaagg ctctgcaccg gctacctgct ggtgtgtagt
      541 aaaataagat ggacatgata ctgggttggg agtacaatta aatctatttt gcaccaatgt
      601 gttggtggac agatgagttt ccacatggca gagctttatg atctttaagg tagactgaac
      661 taatagattg gtgtggagcg cactgaagtt actaaggatg agaaagcaag cagcagtaca
      721 tttgaactac aggtttctca tatgctccac gtcatgctga gtttttatag ctcctggctt
      781 tcaaaaagcc tgtttcaaag aggtttgcgc tagactg
//
LOCUS       KCOD01000333             469 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 37111pyr ultra-conserved element locus
            uce-3724, sequence.
ACCESSION   KCOD01000333
VERSION     KCOD01000333.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 469)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 469)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..469
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37111pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>469
                     /note="ultra-conserved element locus uce-3724"
BASE COUNT          149 a           98 c           86 g          136 t
ORIGIN      
        1 aacattaatt cttaaagaca tcatcttttt cccgaatttc tggctataat atattcaggt
       61 acaaatggtg ctgtcatctc gagctacaaa gttattactt ttaatatgcc actaccctac
      121 tgttatgtaa aagaaaaata accttgtgtg acagtttaac attgatcgat gtgcctgcca
      181 aatgcaaaga gataaataag caggtgatga ataaacagca cttcaagtaa agacattacg
      241 ctgcatgcat aaaacgacgc caggcaccta ggagctgtgg gtggccgaag gttggccatt
      301 tcatgcccac tcactaaagc agacttaatc gcttccaata ttttctgtta aaaagcacgc
      361 ttaatgagcc aatttcacaa gcccagagaa actgattatt atctccgagt tccaactgag
      421 ttggttgttt tccaagagcc ggtttttcct tgacgggata aaaaccttt
//
LOCUS       KCOD01000334             502 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 37216pyr ultra-conserved element locus
            uce-2250, sequence.
ACCESSION   KCOD01000334
VERSION     KCOD01000334.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 502)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 502)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..502
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37216pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>502
                     /note="ultra-conserved element locus uce-2250"
BASE COUNT          151 a           93 c          102 g          156 t
ORIGIN      
        1 ctggtcactc gcttcctgtg accccggctg gcgctcgcca taaaatctga aaagtgcata
       61 aaatgaagat aaagtgcctc cttcaagtct gacaaaaccc attcctctgc agaatgggag
      121 ctgcagtgaa agtaaataaa tgaatggaca gcaatcacag cctagttgat gaaactgttc
      181 aattaaagca caggcattta catggtgtaa tttccctaaa ttgccaatga gcccctttag
      241 acacaaccag tgttcaaatt gatttcagca ttgattttgg ctgaagctga taaatttctg
      301 cttgttagtt aaagtaattt tgcagaagac tttgtagtgc agtattgaag tgttcattta
      361 gctgatggtt aaaagaggag ttatttacag agggttctac tgttgggctg agatgggaca
      421 attccccggt catcttttta cttttaattt ttaagcttca gtatccaatc aatacgttat
      481 tgaaactgat taaaatgtat cc
//
LOCUS       KCOD01000335             587 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 37419pyr ultra-conserved element locus
            uce-727, sequence.
ACCESSION   KCOD01000335
VERSION     KCOD01000335.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 587)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 587)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..587
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37419pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>587
                     /note="ultra-conserved element locus uce-727"
BASE COUNT          207 a          114 c           94 g          172 t
ORIGIN      
        1 attatttttt aaaggaatgt ctcccccaaa tgggaacaat ttccttctac acttccaacc
       61 aagtgtactt aacattaaaa gagaactgat agaacatatt taattactca aggttagact
      121 cctaattcct caattcacta aaggaaactt ggcaagaaga tgcatcattt tgctgctttc
      181 tactggagca tctgagggag aagagccact gaggcagcta atacacaaaa catgatcaaa
      241 agtgattaac aacagcttca tatgcaaatt gcattaatga aggagtgcaa agtcatcatg
      301 taaattaaat atgtcaaatc tcttggtgaa ctttcaatct tgagaagaaa aaacaccgct
      361 ttaatttttt tacatcatca attttccaag attgaaaatc taagaatctt ggtgctataa
      421 aacaattttc accttttttt tctccttcag cagcctgaca ggctggcctg atgtgtgccg
      481 aatgcacatg ttaataggcc aatcaaaaat gcaaaacaat tcgcaattac tgcaaggacc
      541 taatggtcat tagaatttac aactaggtaa tgaactaaag tctgccc
//
LOCUS       KCOD01000336             803 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 37528pyr ultra-conserved element locus
            uce-1920, sequence.
ACCESSION   KCOD01000336
VERSION     KCOD01000336.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 803)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 803)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..803
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37528pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>803
                     /note="ultra-conserved element locus uce-1920"
BASE COUNT          224 a          154 c          144 g          281 t
ORIGIN      
        1 gatgcagagt tcaccctaga gcgctgcatt tccattcatg agcatagtac atacataatt
       61 aatgcaatct gctgtctgtt atgactagag atgacagaaa tttatgtgac agctaccaaa
      121 tatgtatata tttggttgtt gtgtatatgg ctgttaatag gtttgactgt atctagcatt
      181 gataatatgc caccaatgtg gtgaagttaa acccatccca cgtcttccag gcctggtgtg
      241 tggtagggct atccaatttg aatagctcct ttatgttctt tttcaaacca aacgttttta
      301 tttttgtcaa taaactgtgt catttattat agttaagaaa actcatgttg tttgaggtct
      361 ttatcagagt tcctacaaat caggttaatt ggtgatcaac agagcttttc tgcctttaat
      421 gagccctggt agcccaaggc aaggcccagc tcttgataag ggactttccc tttccttatt
      481 caggactctt tgatcacttt tttttaactg ggagaacaac cgccgggaat gtcattgttt
      541 tttaattgcc tgattaccaa atgttggaga taaaagatag atgttctcaa ttaataacat
      601 ttacatagat tagcatcact aacaagcctc attagtagct gctgactttt gtttagactg
      661 cgtcccatgt cagttgtgct ctgatagtgc actggtaact acgttctcca tattaaaata
      721 tatttctttc taacctcctt ccattaatca ggctatgaca ttttaaagca caaacattaa
      781 agttaactct tatttcacag agc
//
LOCUS       KCOD01000337             757 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 37639pyr ultra-conserved element locus
            uce-4076, sequence.
ACCESSION   KCOD01000337
VERSION     KCOD01000337.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 757)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 757)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..757
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37639pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>757
                     /note="ultra-conserved element locus uce-4076"
BASE COUNT          219 a          151 c          149 g          238 t
ORIGIN      
        1 agagatcaca aacttcctcc ttgtggttgc tattagagaa ggggcacgta gctgttatgg
       61 atgcatttta ccatttttat cctgtttgtg ctgccacatc ccggccgtgc taatcgttag
      121 tgtttcgtta agattaaggg tcgctgactc ctggtgttca cattctggct ccttacaatc
      181 tcccttaata tgcaagtggc gctagattga ttacacgcag gctcttatta ttaagcagaa
      241 cagaaaagaa aggaatttca aaatataatc ctccgctccc aggagtattt gtcttgttct
      301 ccatgaagtt aaaggtctga aataatgtgc ccatcaggag ctcaatgttg catgtccatg
      361 ccagttggtc caagggcttg ttatgatggt aatgacctgc tgaaacgtga gctttgatgg
      421 caacaataca attgctacca gctcacccgc tgggagaaat attttattat tgtcaaatgc
      481 cctccgcaga gatttgtttt gcctgttcct gtttaaatta aattcagagc agaactgcat
      541 tattatttct ctagagtata tttgaaataa acaactagtc tccaaattta ggattcctgg
      601 ttagtttaaa ttttcttatt agcagaaaaa ttacaatagg tgacaacata gctgcaggaa
      661 tattattatg gcagccatat gagagattta cacactgaga gcatggccta aaagcacaag
      721 aactcctttc tactttacaa atgccagcca aattaat
//
LOCUS       KCOD01000338             772 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 37751pyr ultra-conserved element locus
            uce-3776, sequence.
ACCESSION   KCOD01000338
VERSION     KCOD01000338.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 772)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 772)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..772
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37751pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>772
                     /note="ultra-conserved element locus uce-3776"
BASE COUNT          227 a          178 c          150 g          217 t
ORIGIN      
        1 ggatggaatt gaaaggcgta acaaacgaaa ttgtccaaaa tattcactga aacacatgct
       61 ggggtggaaa caacctatta taaaattact gtaaagatcc tcaaactgtt caagggaaaa
      121 aagtccaatt ttccacataa cctgagagca cagggttttc tgattataag atccaaggaa
      181 cctgtaaacc caaggctcta attttcttat ggcgactgcg taatattttg caaagtaaaa
      241 ttgactgaga tggaagctat tttgcatggt acagtggcga tggctaacaa atgagagttt
      301 tgtgagctga atgttagtcc cctgcctcat ctgccacccc taatgacagc agccacctgc
      361 tgttttattg tcacagctgg agccggttca cactccttgg tgctgagctc tgcccatgag
      421 cgccaagctc tcgcctcgcc tcattacttt gatgaacttt ttatggtcag cacccatgaa
      481 gacctcatct aggactatac aacctagatc ggcttcaggg agtgcttcca gctagcatga
      541 ggtgataata cacagtgaca ccacggctgc tactgcctgt cacttaggca agtcacttct
      601 ggctctacag ggccctcaac aggtaaaatg ccatgaaatt ctcctttaca agaaagttca
      661 ctctctttct tttcacattg agagatcata ttaccaacat ttagcttttg atattataat
      721 atgtatcatg ctgtttactg catataacca cagacaagaa atctctacat tc
//
LOCUS       KCOD01000339             669 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 37859pyr ultra-conserved element locus
            uce-5811, sequence.
ACCESSION   KCOD01000339
VERSION     KCOD01000339.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 669)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 669)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..669
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37859pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>669
                     /note="ultra-conserved element locus uce-5811"
BASE COUNT          206 a          103 c          107 g          253 t
ORIGIN      
        1 caggatcagg accttaatct tgtgttttat gctattcgtt gaccttgatc atgtacacgt
       61 ttattactgg tatgaaaaag tacaaggtag agtgagtgac attcctgatg cagggagaga
      121 tttacaaaaa gaaatgcgag ttttttaact gttctaaaaa taacctaaaa gtttgagact
      181 agcttgcatt gatgtttaca tgaagcctgt tatacataat tttctgaagc tgttttcaat
      241 catgcaaatg attttttcct ttgcaatatg ctaatgcaat ctgatttatt tcagttgtaa
      301 aagttaatta caatgtgttt gtgagtccct aaagatgatg tattaaatgt ttataaccag
      361 gattattaaa atgtcctgtc tcgattacag tgcttctctt tcaaacacta gaactaattg
      421 tagccttaaa tcacaacaac ctcaccgtta aaattaacac aagggcaaca ttgcataatt
      481 ttaattaatt ttaatttggc caaagcaaat taatttttgt tttctagaag gacagtttcc
      541 agctacgttc cgttagacat ggagttcata aactttttcc aacatttgtg catatttata
      601 ctttaaatgt gatttgtttt cttatgctct ttctattttc tttgaaatta ctgtattcat
      661 gtctgaagt
//
LOCUS       KCOD01000340             564 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 37973pyr ultra-conserved element locus
            uce-154, sequence.
ACCESSION   KCOD01000340
VERSION     KCOD01000340.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 564)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 564)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..564
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37973pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>564
                     /note="ultra-conserved element locus uce-154"
BASE COUNT          162 a           75 c           83 g          244 t
ORIGIN      
        1 ttctgaactg caacttgact aagaagcccc tgggtacaac aggtcctatt gtggcctttt
       61 ctgatgtgag acttgaacta gtcgattttt ttgaaggcta acctaacctc gactatttgt
      121 tgttatgtgc aatactgttt gtactgtttg tataaaagaa aaatgaaaag aaaaaaggca
      181 taaatcttta ttgcagattt attttcattg cagactttag acattgtgat tcactaaaat
      241 catttttcta ctgtcaaata tgtacctttt cttcatgctg gtattttttc aatagtaatg
      301 tagcctttgt actgagacaa attttcattg ttatttttag aaagattttt tgctaagaaa
      361 aaaattaaac atatttacat atttttcatt tttatttcgt attttcttta aggagtgctt
      421 tctcaaccat taatatagtt gtttctggga gagactttca tatctggtca atgtcattaa
      481 tattattttg tatttttact tggaataaat taattttatg atgctgattc tttaagttta
      541 tttttttcat tttcagttat tttt
//
LOCUS       KCOD01000341             797 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 38084pyr ultra-conserved element locus
            uce-3387, sequence.
ACCESSION   KCOD01000341
VERSION     KCOD01000341.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 797)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 797)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..797
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38084pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>797
                     /note="ultra-conserved element locus uce-3387"
BASE COUNT          245 a          162 c          130 g          260 t
ORIGIN      
        1 tgaaggtatg ttttctcttc catcttatga gctaattatg ccaacacaac ataacgtttt
       61 cctaaatgcc ttataaactg acccagttac tcagaaagta ttatttttaa attgatgtga
      121 tagatgcaaa ctggaacgtt tggatttcaa ttctggcacc aattcccaga tccccttccc
      181 aagtaattta aggacttcct cccgatagtt tttcatattc ttttaactga cattttatct
      241 ttatacagta tctcagcaga atgaacatgc actaaaacaa tgacagccct tctttggctg
      301 tcatctctca ttctggcaaa gacagatgtc ttacactggc ttatgccaat aatagagccg
      361 acaaaaaaca acagagacta cctgcctctg atgtaaaggc accaattcac atttgtgaca
      421 ctcatttgtc aattaacaga tttcttccat tgttgacaca tgggacttaa aagatgtggg
      481 ctagaatgtg atgaattaaa aaagacagat gagtaagcta tgagctgcaa agtaatacta
      541 taatgtgctt tagataggaa tatcaactga cacccctgac aggccataca aggttttatt
      601 tcattttgct ctgtatctag gcttcatact ttgtcttctt tgttctcttt tcatcaagct
      661 cctaacatct cattctgaca gccagagaca tttaaggcac tttcgtttca aatgcaagtt
      721 agcatacttg atttgtcatt aaaatgcaaa acgattgcca ttgcaggtaa atgtaggtat
      781 gcttaaaagg ttgtatc
//
LOCUS       KCOD01000342             350 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 38186pyr ultra-conserved element locus
            uce-3631, sequence.
ACCESSION   KCOD01000342
VERSION     KCOD01000342.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 350)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 350)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..350
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38186pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>350
                     /note="ultra-conserved element locus uce-3631"
BASE COUNT          105 a           70 c           65 g          110 t
ORIGIN      
        1 acatatatat agaattgaag gcatggagct cttactttct gaagaacaat tcccttgtga
       61 agccactgac tggaaggagc ggcaaaaatc ctcactgact tggcggccat gtcacacctc
      121 atttcactcc ccctttccaa acagactgag tgctggtctt ctgagaatat gatgctaagc
      181 cacttttcct gtagagtttt taaactaggc ctctgagaaa gggtttgata caattcaatg
      241 actgaagtaa tacctttgtc catctgagca ttaaatggcc cattgaaata cagtttagtt
      301 agaaagaatt tcagtaaatg gtgctttcta attattatca ttattattat
//
LOCUS       KCOD01000343             614 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 38295pyr ultra-conserved element locus
            uce-2226, sequence.
ACCESSION   KCOD01000343
VERSION     KCOD01000343.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 614)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 614)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..614
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38295pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>614
                     /note="ultra-conserved element locus uce-2226"
BASE COUNT          195 a          136 c           92 g          191 t
ORIGIN      
        1 ttttgttcat gtgcatgtct ttacatccac acagaaattt tcaacatgga aaatactatg
       61 gcttggaaag actaaataga tggtccctat ttttagcacc tccaggtttc agtcttcttt
      121 aatgaatttc aaagtaaagc atccctactc tgttcagaag gtaataggac atttaaatgc
      181 atttaggttt agtattgttt ttaattggta tgtttatgat caggaagaag atccgtgaaa
      241 aggcaaaaca ttagtgctcc tactgagacc tctactaacc tcgattcctg agagcacctc
      301 tagtaaatac cctggagcaa agtctaggat cacttacatt ccagcaactc tcactgggaa
      361 ttatccaatt aaagcagcaa ttcccccacc cctttttccc tcataggtct aaaaaatata
      421 ttgcaaaaac caactactcc gtattttaat aaccctggtt tctcaatgaa acgtccacga
      481 gaatcataca ctgttttatc tcccattttt cctcctccaa agagacgtta aaacatcatt
      541 gtacatacag agtattgctg aagagatcat tactgataaa caagggacta gctccctcca
      601 tttttaatca atca
//
LOCUS       KCOD01000344             374 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 38405pyr ultra-conserved element locus
            uce-6033, sequence.
ACCESSION   KCOD01000344
VERSION     KCOD01000344.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 374)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 374)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..374
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38405pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>374
                     /note="ultra-conserved element locus uce-6033"
BASE COUNT          107 a           92 c           75 g          100 t
ORIGIN      
        1 cccacggcaa gataaatgtc cacctcccag cctggcttta agcacgggaa ggccaataaa
       61 aggttgttat ttccgctctc ccgctttatc taaaacagcc agacaaaaca aatgaaaagg
      121 cttttgtaga aaatcttaat tgtggctgga cagttgtaaa ctcattaaga gccgaattcc
      181 agacagtttg cagacccgtc atttattaca cactcttaat gctgattctt tgaagttgcc
      241 tctgtctgca acaacagagg gcgtcccagc atccccaaat actggctcag ggatcaatta
      301 gggggtgtgt gtgcacgcca gaacgagctc ccttttgcta attagaactc atcaaatctt
      361 acctcggatt tatt
//
LOCUS       KCOD01000345             755 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 38513pyr ultra-conserved element locus
            uce-205, sequence.
ACCESSION   KCOD01000345
VERSION     KCOD01000345.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 755)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 755)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..755
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38513pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>755
                     /note="ultra-conserved element locus uce-205"
BASE COUNT          236 a          124 c          147 g          248 t
ORIGIN      
        1 ccacagccca aagtgacttc tgtgtgcatg agaggcaagg aattcttgag aaaataaaag
       61 ttccattctc cctttgatga gtgggggatg gaaaggaaag ggaatgtgtg accattcatc
      121 acagcaccag gctcgttagt acccaggaac tttctactct aaatgacaaa gagtttcact
      181 gtcaccaaag agaaattgct gctgacctta gacctctttt tggaaagtaa aataatggag
      241 cacaggagca gaatttgata tttgaccgaa ttctacacaa ttatcatgca tgtgtatata
      301 ataaaattaa ttctgtgtct ctgcattgta gcctcaggca agcagcgtac aatcagtttt
      361 gtatgtataa tagatcacag agttgttcat gaataataca aatgcattga gcagatacta
      421 gtgagtgagg atgtttgtct ttgcatggaa tcgaagtgaa catgtaatat tgtgataata
      481 tatatttgat gaattcaggt ctgacttgcc tttgccatag cctgctaatt ccccgacaag
      541 ggttgccaca ataattgagt ttccaataac attatgatta tttccacatg ataatttaat
      601 tgtaggtatt ttttaatatt gtaataatgt agatttgtga ttattatgca tttgcatgca
      661 gattttcatg gtgtcttgga gcacatccct acatttataa cttaatttcc tctattattg
      721 catatatatt ttgggatgaa ctcattaatg caaac
//
LOCUS       KCOD01000346             545 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 38622pyr ultra-conserved element locus
            uce-2981, sequence.
ACCESSION   KCOD01000346
VERSION     KCOD01000346.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 545)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 545)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..545
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38622pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>545
                     /note="ultra-conserved element locus uce-2981"
BASE COUNT          153 a          120 c          131 g          141 t
ORIGIN      
        1 cccacgattt gcatgggagt tcctctccct gtgcaggaga atgtggtgcc ctgggatgca
       61 gcacatccct gaggggcctg cctgcccctg ccataccagg ctattcttta aaatatagcc
      121 cccaattcct gcatttatta caaatgcaaa ttacagatga aagcatcaac tacacaaacc
      181 attactcaga ggagcatctt tccaactgct ggacttggac tgaacagctt gtggttaatt
      241 tgctatataa tcactgcctg caacaggaaa gcaagtgctt caactgtgct aatattatga
      301 aaggggaagt taaccataga gataaattct gaggagctgc agctgggatg aaagagggaa
      361 ataaatgtag ctggagtcca ggcttcaggc ttgcaaaagt ggccgcttgg atatttaaag
      421 ggataaaaga tttcaggtta aacatatttt gaagttgctt ttagcctgaa tatattttcc
      481 cagaggcaga ggatccctgc agctcccatt gacccgtggt tggagcagtg ccctggcctg
      541 tgcag
//
LOCUS       KCOD01000347             429 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 38732pyr ultra-conserved element locus
            uce-1215, sequence.
ACCESSION   KCOD01000347
VERSION     KCOD01000347.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 429)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 429)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..429
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38732pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>429
                     /note="ultra-conserved element locus uce-1215"
BASE COUNT          139 a           84 c           89 g          117 t
ORIGIN      
        1 cctgaatgaa ctcatataca aacaaaatta ggagtttctg ttctgacacc acggtttcat
       61 atcattgtac tcagtgtagg aggtgaagac aagagacaat ttattctgca gctggtttag
      121 aaataaacac aaccatggaa gataaggagt gaaagaggga taaatcctcc tgaagcaaac
      181 ttgatggaca gacaggctgc cattaacaat gctgttgcca agtacagagt gatgtggttg
      241 catttatact gtagacatgg tccttaaaga ttttacacct ccaattcctt agaattatca
      301 gctatctcca gcctgtcact catcctggca atcttagatt tctagcttgc aggccaggca
      361 gattattgac aaagcaatcc aggatgatat aatacaccct gacaaacaac agttaggggg
      421 attgtgttt
//
LOCUS       KCOD01000348             740 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 38839pyr ultra-conserved element locus
            uce-6690, sequence.
ACCESSION   KCOD01000348
VERSION     KCOD01000348.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 740)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 740)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..740
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38839pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>740
                     /note="ultra-conserved element locus uce-6690"
BASE COUNT          175 a          223 c          176 g          166 t
ORIGIN      
        1 ataatgggtg ttggcaaaat aagattccat gacctgtttt catcattttt ccttctttcc
       61 cttctgcttt ttcagggtga tcttgagttc ttcttaactt gctagtgctc agcctcctca
      121 tgcctccatc tcctttagac gacagggtag tagtggcact ttcgaggcca gtgagacctc
      181 aggatctcaa cctgtgttta gactctagct tccttgaatc tgccgcttct gctggtgaga
      241 gccactccag tctgctcggc gcagctgtcg tgtccctaaa gactgctaat ctcacgtata
      301 tgccctcatc caacggctct gcacgctccc tgagttgtgg atgcagcagt gccagttgct
      361 gcactgtggc aacgtacgac aaggacactc aggcccaaac tcaagcgagc accagcccac
      421 gccggagcct cccccgcctg ccccaccaac caaatggtca acagcaatga gaacgccggc
      481 agcctgagcc cgctgggcgg agtggggagc cccgtctcgg gcagcgccaa gcaactcgcc
      541 agcatcaaaa tcatctaccc caatgatctg gccaagaaga tgaccaaatg cagcaagagc
      601 caccaacaga accaagggcc tgtcatcatt gactgcaggc ccttcatgga gtataataag
      661 agccacattc aaggggctgt ccacattaac tgttctgaca agatcagccg gagaaggctc
      721 cagcagggca agatcacggt
//
LOCUS       KCOD01000349             842 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 38954pyr ultra-conserved element locus
            uce-2963, sequence.
ACCESSION   KCOD01000349
VERSION     KCOD01000349.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 842)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 842)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..842
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38954pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>842
                     /note="ultra-conserved element locus uce-2963"
BASE COUNT          225 a          168 c          203 g          246 t
ORIGIN      
        1 agaacgttaa ttgcaagatc agctttaaat gaacttttta tccctgaatt aatttcctga
       61 catgtttcga cacgttttca ggtctagaca ttcactccgt acattcattt caaagtgtgt
      121 caacttggaa tgagatttag aggccaccag gcattacttc aattagcagg gtccattttc
      181 ccatctgtcc atcatcattt actgggactg gtggctgcat ttcctagaaa agtctttaga
      241 agataaagtg tgtgcttttg ctgaaacagt ttttgagctg tatgagggca cagcagagta
      301 atttggcacc tctgtgcaat tcggagagtc ttgcagagtt tgccagtcag ctcttaacca
      361 aagagagcaa aagagcgcct gttggattaa cgttacggtg aagtatggga agctatattt
      421 catcgctgtt atggctgcaa gaacaaatgg tgtttataca gggaccttgg cagtgagaaa
      481 acagtcatta aacaggaatt aaggagcttg tcatcgccac ttcttttcag ttacagaagg
      541 ccctccaagc cgtttttatt gggcccctgt gaattttgca gtcagctggg ccagatggag
      601 ctgaatggag gaacagagtg gctttttgag acagctcagc ttacactgca ggcatgttca
      661 gaggtattgc gctgctctct gtgcaaggag attgatgtcc cttctgttga tatttgataa
      721 tatctggcgt gcctttctgc aggtgacccc acgaaagaag ttcaaatgtc cagaatgcac
      781 agcaattgat gggttatcac tggaccagac acacatggtg gaaaggtgag tgaccactct
      841 at
//
LOCUS       KCOD01000350             560 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 39065pyr ultra-conserved element locus
            uce-1305, sequence.
ACCESSION   KCOD01000350
VERSION     KCOD01000350.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 560)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 560)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..560
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39065pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>560
                     /note="ultra-conserved element locus uce-1305"
BASE COUNT          149 a          133 c          108 g          170 t
ORIGIN      
        1 tagatctctc ttgggatata tttaactaaa ctttttcacc tgccctgcct tcccactacc
       61 ccacagtggt tagtatagca cagagcttga tgcagctctg gttgaggtca agcactccaa
      121 ttcgaacctc tcaagggctt tctctatgtg ttgccagtgt actggtaaaa atgactttaa
      181 actcttgtca gtgcagttac tggtgcatgc atcacagtcc cactcaaata aacctgtcac
      241 aacacagagt cagcagctag agaagagtac aagggcaggc ctctagcttt tcattcgagc
      301 atcactaaac gtgcacagag tgcccaatta tttcagcatt attgagcaag cctacaggaa
      361 gacccaagcc ttgctacatt agattttctt tagtaatttg ctcaagtacc gctgaggaca
      421 cttaaagggc ttaaaacggt ggctgcaacc agtttccttt tctggattgt taattcaggt
      481 tttctctttc aaattaactt tcactgcatg ctgtgcagta gcgctgggag aactgtttaa
      541 cactaatttt ctcaattttc
//
LOCUS       KCOD01000351             578 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 39176pyr ultra-conserved element locus
            uce-4703, sequence.
ACCESSION   KCOD01000351
VERSION     KCOD01000351.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 578)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 578)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..578
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39176pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>578
                     /note="ultra-conserved element locus uce-4703"
BASE COUNT          192 a           95 c          120 g          171 t
ORIGIN      
        1 ttgctggctc cagattctgg gtgtttgagg acacagtcat ttgccatgct ccaactttga
       61 ggaagaattt ttcaattttt gacaaggccc ttagaatcac attgcagagg aaagggtgta
      121 ttataattat caatatcaat agtaataaaa gtttattaaa ggccattaaa atgaaagggg
      181 atggctatag atcccatcac tctgaattga ctccctcctc ttgtgttaat tagaaaactc
      241 agataatggt tctatggggg agtgcagggg aaatttaatt acgaaagttt aatgggccac
      301 tatctacttc ctgccagatt aaaaactgat gatttacact attttagata ctactgtggg
      361 cttgctaaca aaacatgttg cagaacaaag agcaatgcaa gacttcatcc ataatttgct
      421 cgttttaaaa caaagatgaa aaatgcagac ctgaaaacca aacagctgtg acagagatgt
      481 taccgccaaa aacggagagg aattgtgagc agtctttgtt aggttcatgg tttgttgttt
      541 attagaagca aatacatttg cataagcaga aatgtctg
//
LOCUS       KCOD01000352             576 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 39283pyr ultra-conserved element locus
            uce-4115, sequence.
ACCESSION   KCOD01000352
VERSION     KCOD01000352.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 576)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 576)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..576
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39283pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>576
                     /note="ultra-conserved element locus uce-4115"
BASE COUNT          175 a           93 c          102 g          206 t
ORIGIN      
        1 tgagattatt tgtacaatta aaacacacta tcccttctgc agctctgcac tgaatctggc
       61 accataagct tatctttaaa tttatatagc ttgagagata tatatttaaa tttctgttcc
      121 tcttaagggt aaataaatat attaaaataa gctatggctt gtatagtaca gtataacaat
      181 gataaatgat gttgtgtgta atttttctac tattaacata aagtaatata aactgaagga
      241 cactagtcta ttgagagagt tagtagctaa tgttccatat cagatgtgga caatgtcagg
      301 actgaataca gattaggcag tgtccttttc tccccagggg aattaaactt tgagacacta
      361 ctggctgcca atggttttac tgcattttgt tggtgcctgt ggtgcctttc ttggtctatt
      421 aattcagaag ctgtaaatga caatgtgtgc aaaaaaagct tttccagtgg gatgcatttc
      481 atttatgtat tcttgtatct acaatacctt ttcaatccgt tttgtcacaa tactctttaa
      541 aaaagtgggt agattatctg tgctttacct taccag
//
LOCUS       KCOD01000353             731 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 39396pyr ultra-conserved element locus
            uce-2122, sequence.
ACCESSION   KCOD01000353
VERSION     KCOD01000353.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 731)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 731)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..731
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39396pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>731
                     /note="ultra-conserved element locus uce-2122"
BASE COUNT          227 a          124 c          134 g          246 t
ORIGIN      
        1 tttaatggtt acatttttca ggcttataaa ttaatttgaa ttacccaata tcacttaatt
       61 tttccctagg aaagcttctg cttgcccgag caatattata actgctaatt caattacact
      121 gaaattgttt aatagaaaat ataattgctt attcatacag aatacccatt aaagaagtgc
      181 aaaggcctat accctagggt tactacatat tagtactttg ggaattcaga ggggattgct
      241 gggtagggaa ggtgctgact gatctttaat tgttcatcac ctgcctccaa aataatatga
      301 atggacccaa actaaatgac cactcattac aagtttcaat ttaggagctt ggctgaggtc
      361 agcagattgc ttatgctgat cgcaatgatt tgaagttgtg attaccataa gcaatttaaa
      421 ttttattgat ctacccttct gaaagttgta attgagcata gatgttggac ccgtagctct
      481 ccaaactaaa ttgtactctg aagcccttgc tggattactg caagaatcaa taagcagtca
      541 gtcacattaa caatgaaata gctccattaa catacagtgc tactggtgaa actttattta
      601 ggaggggtgt tagttcactt cattgtttta tcaatgaatt tcagttgtac agggaaaagt
      661 atagcttgtg tatgcctaat gagcttgcac agtgataatc ttatatgctt taactatgag
      721 tctttttatg g
//
LOCUS       KCOD01000354             386 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 39503pyr ultra-conserved element locus
            uce-3449, sequence.
ACCESSION   KCOD01000354
VERSION     KCOD01000354.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 386)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 386)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..386
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39503pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>386
                     /note="ultra-conserved element locus uce-3449"
BASE COUNT           92 a           91 c           70 g          133 t
ORIGIN      
        1 aacttacctt tcccgggacc tggatcttga atgactcctc cctctggatg actttctctc
       61 tttgcgttta tgcctctcct caccattttc agatgaattt aggctatctc ttcccttgtc
      121 agaagaatgc tctttgtcat tgtggtcttc agatttgtgc ttcttggagg acttctcttt
      181 ggattcatgt cttcttgcct gttttaagaa gaagttggtt ctttcaggaa aatagtgcaa
      241 caaagagagt tagtatgggt atcagaagat aaaaatgcta agttgtgatg caacattagt
      301 aaccttagga gtgtgactca atccctaatg ccaccaacta cccaaagttg caaatgaaca
      361 cactttttcc ccttttccct cctccc
//
LOCUS       KCOD01000355             793 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 39612pyr ultra-conserved element locus
            uce-1333, sequence.
ACCESSION   KCOD01000355
VERSION     KCOD01000355.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 793)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 793)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..793
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39612pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>793
                     /note="ultra-conserved element locus uce-1333"
BASE COUNT          216 a          176 c          152 g          249 t
ORIGIN      
        1 atctggagta ataacaccag agagctgtca gtcagccatc catccatcta attggcttct
       61 taccatcttt ccatcatgtt ttttttataa ctggtcgcct ctggctaaaa tgcaaatcat
      121 gaggaagagc cgtctagaaa aagctgctgc tttcttaatt atctgtcaga gtatggacca
      181 gtggaccctg ggccgcggag tggagttatg ctaagcagaa aggcatcatg ggaattggag
      241 tgacagctca tttttttttt ccgcgttcga atgacaatgc agaaatacgg gtttttccca
      301 cactttctct gaacacctgg gccaatgctc aggggaacac aaagccaaaa ctgtcacatt
      361 tccagacatg gtcttattgc tgtcactgtg acaggattgt tgacaaatgc cagcagtcat
      421 ctcagcatct tgggaaatgt ctgccgtggt tgtgtcaaca gcctgacaga aattgttaat
      481 gtttaaactt cttccactga cagaatcctg tcttgctgac agtatttgtc atatgaaact
      541 caatctttgt caaacttgct taaaaattaa cacttcctcc atttcttttg cagctaactg
      601 cctgtgtgct ttccttaagt aataagattt caacaaggta atattccaca gtccacaatg
      661 agtccaagag cacaagcaca ttatgaactt atggccagct tgtccttttg acctctgcta
      721 caatgataat tatgctttta ttccttgccc attttttttg ccttaggaat caaagttctg
      781 aattattcaa gag
//
LOCUS       KCOD01000356             600 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 39724pyr ultra-conserved element locus
            uce-7621, sequence.
ACCESSION   KCOD01000356
VERSION     KCOD01000356.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 600)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 600)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..600
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39724pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>600
                     /note="ultra-conserved element locus uce-7621"
BASE COUNT          173 a          139 c          123 g          165 t
ORIGIN      
        1 tatttaaaat gaatcccact acgtagatca gaaaaacaag gagttttctc ttttcttttg
       61 tgatttctca tcctccaata ggccatcctg gattttaaaa aagcagaagg tgaaattcta
      121 tttgtcatca atttctctta ggggttacag agcagaaaac tgcagacaag ctgcttcttt
      181 gatggctcac tcctaaaaat ctctttttgt tctttatcta tttgaactga cagtgatcag
      241 agctacagca ggacaggccc ccctggagaa atcaccttcc ccctgtctat tgacagattc
      301 ctctgttctg aatcagacag gccttgtccc atcataggca tcaaggcctt ggaagtagcc
      361 accaattaaa cctcttgagc cagtaaaatc tgaagccact tttgagtgtc tgttctgatt
      421 aggcaggatg agacaacaga gcagctccct ggtctcaatt ttctttctca ccaggtgcga
      481 gaggtgtgag aggagcttca cacaagccac ccagctgagt cgacaccaga ggatgcccaa
      541 tgagtgcaag ccaataacag agagcacaga atcaattgaa gtggattaac tgattgactg
//
LOCUS       KCOD01000357             445 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 39831pyr ultra-conserved element locus
            uce-5198, sequence.
ACCESSION   KCOD01000357
VERSION     KCOD01000357.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 445)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 445)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..445
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39831pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>445
                     /note="ultra-conserved element locus uce-5198"
BASE COUNT          121 a           90 c           66 g          168 t
ORIGIN      
        1 tttcttgtct tgctcaaggt ttaacaaatc ctttgcaaaa ctaccaattt actgaatttt
       61 tttttttctg cttttggttt ggtgatcata tctctttgtc ctgattttaa aatacttccc
      121 tattgaaaag ctaatgtgct gcaccttgtc ctgtccttac tactagatac aaaaccagat
      181 tcctggagcc atatttccct ttgtgttcta tcctattaaa cctccaaagt ccatcacctt
      241 ggattcaggt ttgctagttt aacttaactt gttatactga agttaaccat ttttaccact
      301 tttgtcaggt gaagttgagc tttctgacta cagattagaa gtaaggaagc ttacctcagc
      361 aaccatttca agagctaaca gtcatattgg tcattatttt aagagcatgc acattacttc
      421 attgattttg gagaacataa acatg
//
LOCUS       KCOD01000358             560 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 39940pyr ultra-conserved element locus
            uce-7734, sequence.
ACCESSION   KCOD01000358
VERSION     KCOD01000358.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 560)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 560)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..560
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39940pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>560
                     /note="ultra-conserved element locus uce-7734"
BASE COUNT          187 a           89 c          108 g          176 t
ORIGIN      
        1 tttagtactt catgaaaatg cacctagatg tccatcagca aatgggttgt aaattcagtt
       61 gaatatgaaa ctaccaggtt ataatccaaa taaagtgtag tttcagagaa tttataggct
      121 gtgttttcct cttcagggta aaggcactac cccacttgct ccaccaccga agcctattcg
      181 tagaagatta aaatcagaag atgagctaag acctgaagct gaggaacata cacagaaaac
      241 aggtgtcata gctgctgttc ttgcttcaca gccatctatt cctaggtaac ccaagaagta
      301 tataaataca tctgttactg gaaaatttac atttaaacag catactttct gttccaggag
      361 ttgcaaaaaa tttcagtgtg gattaattca acaattttgt ttggttttta aagaaggtca
      421 taaagcatct agtactggga gaaagagatt ttgattttgg agtgtaaact ctttttaact
      481 tctgcaatat gttggaaata agtggtggaa gtattaagat gttttaattt taaatggttg
      541 ctatgaacag tccaaaaagt
//
LOCUS       KCOD01000359             486 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 40048pyr ultra-conserved element locus
            uce-1068, sequence.
ACCESSION   KCOD01000359
VERSION     KCOD01000359.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 486)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 486)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..486
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40048pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>486
                     /note="ultra-conserved element locus uce-1068"
BASE COUNT          173 a           73 c           95 g          145 t
ORIGIN      
        1 attctgagga aatagaacag agcatccact aatcaatcca agttaatgac ttatttctca
       61 aaacagaatg aagaaaggga ggaaagaaca tggaagggaa agtattgcct tgaaatatgt
      121 ttgaaaatat tttatgaggt cacactaaaa gagtaattgg aagaaaaatt ctgcttgtct
      181 aagcgaagag cacatttgta gcagtagggt aaatgtttta tcgattggga aactgggaaa
      241 ctcaagtcat tactcaccat gggctaaaga ataattgcta atgctctggc ggaaagatta
      301 aaaacagttt ctggaagtat ttcttacaat gatcaatggt gtatcatccc aggccattgg
      361 atcttcaata acatttttcc cttttgggat acaatcaatt tttataatat gattcatttg
      421 ccagcaggca tgctttcttc atgcaatgaa aaggcactta tgcaccttat attgttgaaa
      481 aataat
//
LOCUS       KCOD01000360             446 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 40157pyr ultra-conserved element locus
            uce-1326, sequence.
ACCESSION   KCOD01000360
VERSION     KCOD01000360.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 446)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 446)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..446
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40157pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>446
                     /note="ultra-conserved element locus uce-1326"
BASE COUNT          131 a           80 c           77 g          158 t
ORIGIN      
        1 tcttgacaag atcagagagg ttttgagtaa ggtatttgct tgaaacctag gttgttaagt
       61 gacacaaact tctccacaat tggtgttaac ataatttttt tccaatattt tccttctact
      121 atttagtaat ctttgccagt ggctgactag cttgaagtct ttgaaacact gagctttcta
      181 taaaatccaa ataattctct gtaaatcaaa gtacttggca tgcttgctgc aaagcctgaa
      241 gctttttttt ttttaaggta atctctagaa agtagtttgt actcatgttt tcacagtgat
      301 taaatatgca aagtaatttt catgattatc accccgttct gaaccaaatc agatgcggct
      361 atgcttctct ttgtacaaag ccagttattg gatcagattc caaaacaaat cccctgaatt
      421 tggcggatca tcattttaaa aggggg
//
LOCUS       KCOD01000361             611 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 40263pyr ultra-conserved element locus
            uce-1064, sequence.
ACCESSION   KCOD01000361
VERSION     KCOD01000361.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 611)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 611)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..611
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40263pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>611
                     /note="ultra-conserved element locus uce-1064"
BASE COUNT          194 a          104 c          130 g          183 t
ORIGIN      
        1 aacaacttct aaataaagtg aattgcaaca tgaatttata gcaaaacttt actattagtc
       61 tagtaaaaca tgttggcggt ggggaagaga gcaagctgtt gtaaactcct ataaaacttc
      121 tactttctct tcattctaac aagtgtaaaa ctattgaggt taagtaggtg gggcaaccgg
      181 aagtaattgc taaggccagt ggcatttttg tggtttaata aaggcagaag ctaattattc
      241 agtttttatt taagtgaaat gatgccaaaa aggaggttcc tgcagagcag ctgcactcct
      301 tcagtgttac cctaatttac cacagacaca actgtcacaa atagaacttt taaacttgat
      361 atatagccac gaaagtaagg agccctttgt ctggaatgca tgcagaagaa ctcctttata
      421 caaatcaacc ggcagatgac ggacaatgat gaaaatttga ttctttgaag tcataatggt
      481 cattgaaatg tgtgaaattc tggtattgaa aagagagcag ctagcaagac tctaaatcct
      541 gggtggttgc tggaagcttg ctgggaggtt tttctgtgtt ttgacatcaa cttcccattg
      601 cttgttccct g
//
LOCUS       KCOD01000362             813 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 40369pyr ultra-conserved element locus
            uce-5210, sequence.
ACCESSION   KCOD01000362
VERSION     KCOD01000362.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 813)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 813)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..813
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40369pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>813
                     /note="ultra-conserved element locus uce-5210"
BASE COUNT          278 a          191 c          138 g          206 t
ORIGIN      
        1 ccgtgacctg gagtggagtg agactcccct acctcccact cctccagccc tgagagctga
       61 gccacaattt cactgtttta aaaccaaagg acagaaacag agactcttgt ctaacgtttg
      121 catatcttac aacaaactgc actttttcca aaaggacgtt aaaaatagaa gcatatgatc
      181 ttttcccacc tagaattgta tccttacaat taaagactat tagctggcat gccttttaac
      241 cgtcaaactc agacagtggc agttctatag ccacaaagag aagcagtaaa tgagaagaac
      301 atgttactac actgcatttg agaaagtttg gctccaagct atgcactgat taatatcaga
      361 tctccttctt tacttgcctc ttgacaatct tgtcacatct ggctgacaaa tccttacaag
      421 cttatccaaa ccaaggcagc ccagatcatg ctccgggagt agcttgaagg aagcggcaac
      481 accagccatg cactgatgtg ccatcatgaa actaatgaag ctgacttcac ttgcagactg
      541 caggaacacg aagaaacaca acatgcccca aggttttgca acataacgca gagttagctc
      601 accaaaagat aagacaaaca atcagctcca gaggttcaag aagccaagta gttacatgaa
      661 ttacaaaaat ttataggaat tgcttgaaca acaatctcaa ctaaatgagc acaataatcc
      721 aacttcagat cagatgtgaa aatttactgt taaatgcctt tcaaacaatg gtttgtttta
      781 aattaaaaca aaaccagtct aattttctct ctc
//
LOCUS       KCOD01000363             388 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 40477pyr ultra-conserved element locus
            uce-5033, sequence.
ACCESSION   KCOD01000363
VERSION     KCOD01000363.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 388)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 388)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..388
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40477pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>388
                     /note="ultra-conserved element locus uce-5033"
BASE COUNT           97 a           78 c           78 g          135 t
ORIGIN      
        1 cccaaatgtc tgggactggg aaggtgctgg cacctgctga agaagttgaa gccttctctt
       61 tcccctccat ttctgcctgc agccctttgt cgacacttga tcatttacat caagttgaca
      121 ttcgcagagt ttactcaggg gtctgtaatt gtattctttc actggttctg cattaccaac
      181 catgaaaatg gaatcttatc atccctgacc aatttttaat gtacaaaatg atttggccga
      241 ggttcaaagg gagtcacaat tgaaatcagg tgaatgatac atgtagggtt ttttttcagt
      301 ttctccgtgc cttgatttga tttttctctt aggcatacag ggagatgtag cttattttta
      361 tactatataa atgcatgtat atactctg
//
LOCUS       KCOD01000364             684 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 40586pyr ultra-conserved element locus
            uce-4806, sequence.
ACCESSION   KCOD01000364
VERSION     KCOD01000364.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 684)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 684)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..684
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40586pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>684
                     /note="ultra-conserved element locus uce-4806"
BASE COUNT          217 a          120 c          194 g          153 t
ORIGIN      
        1 agctcatccc gcatgttctg gtcatcatag ccgaacatgc ccaggaactc gttcatggtg
       61 gtggcggcgt aatcccgcag tgatgaagct tcccctgcag agaaaccaga ggagcacaca
      121 aggcactgac tcctcccata ccagcactag aagcggggga ggaaggggag aggggaacat
      181 gatctactga cgtttggctc acttgttagg ttttatgact cttaaattaa tttgtttaaa
      241 aaaaaaagta attaatactg gggtaaaata aaaagagttc atcaatgcca ggaaaatcaa
      301 tttcctaaat gttctagccg atggcttttc agtacattaa acaaagtttc ataaatgtct
      361 ctgcactctt gccttggtct aatatgaaga aaaagtaatt ttactggaag tgagaccaat
      421 gccaatacgc cgaggtttgt acagatctgt ccttgtgtat gtttgtgcat ggaaggaggt
      481 gcacagagga tagatggcag catgtgtacg tgtgttggtg aagagcaagc aggagcaggc
      541 aggacagcat agtgtgaaat ggataagcaa ggcagtgcat ggggtagaac aggaggaggg
      601 cagaacagaa tagtgcagaa ggaggagagc agcagaggtg gagatgaatc aaggcagggg
      661 aagagcagca aagagaaact tggc
//
LOCUS       KCOD01000365             600 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 40692pyr ultra-conserved element locus
            uce-540, sequence.
ACCESSION   KCOD01000365
VERSION     KCOD01000365.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 600)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 600)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..600
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40692pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>600
                     /note="ultra-conserved element locus uce-540"
BASE COUNT          176 a          140 c          123 g          161 t
ORIGIN      
        1 gtttccttgc cggctgctgc acgacctcat tagtcattaa tttccactct catgaccttc
       61 atgtagccag ccaggtgggc agtggtcagt atggaaacct tacctgattc tgcagaactg
      121 cacttacagc gtgtgctaaa attggagaca gcacatttat ctggttcttt agaaaaaggc
      181 tataacagaa ataagtagat gttcttgcac ttgtcattga gaagcactct gcatttattt
      241 ggcacttaga acaggagcag cagcagcagc attgcccttg gtgctgattt cttactactc
      301 taaaacgtct cctctgagcc agaatccact ggctgttgct gctcatgctg tgagacacct
      361 gcactggcta ctgggcttgt catgacgcac aaaaccccac catcttcagc ttgacattgt
      421 gcaagttata attattcatc caaatgaata tgtcagagca gcagcagcag atctctcatc
      481 agagcaaaag aaaaatacat caaaacatta tcaacccagc aggaagacag ggaccataag
      541 gaaaattacc catttttaat atggatgcca taaagccgtg tctattatta tacggaaggg
//
LOCUS       KCOD01000366             726 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 40803pyr ultra-conserved element locus
            uce-4154, sequence.
ACCESSION   KCOD01000366
VERSION     KCOD01000366.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 726)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 726)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..726
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40803pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>726
                     /note="ultra-conserved element locus uce-4154"
BASE COUNT          232 a          131 c          127 g          236 t
ORIGIN      
        1 aattttcctg aaagtcctgc agaaatctca gttacagccc agcactattc tgtgctttca
       61 acaaaagctg agtgtgttta gagtaatttt tccataatgc cagtatctgt gacagattac
      121 attactccac acacctgcat ttgctctgaa cctgctagcc tgataaattg ataattggtc
      181 acatgttgtt ttaaaaaggc aaagaacata gttcctaata aaagaatgct acatatttct
      241 tctaaaaggt taaaaagcat ttctcagggc tcttaaatta ccatattctg ataccagggg
      301 aaaataaaac ctgggcttag agtcttgttt gtacttagaa ggctttccgg acaggaaggc
      361 aatcttgatg caattcagta agccacaata ccagtggggc attacaggtg aaaaaattgc
      421 agctgtaccc ctcaccacaa tgtattacaa ctgtacagtg gaatatttcc tgtacagaaa
      481 tagggcttgg ttaactttgt ttcccaagag tagatcacat taaaatgtta taaaatcatg
      541 atttcctgca tttgaatact tgtggtttct caactggttc caatattaca aaaggttttt
      601 tatagcttct attagttgaa gatgtataga agcccaaagt cagctaaaag gaagttatgt
      661 atttttaaag aacagttttt ctcagaagac aagagttttc tttcacatct cttctatttg
      721 atattt
//
LOCUS       KCOD01000367             710 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 40913pyr ultra-conserved element locus
            uce-6873, sequence.
ACCESSION   KCOD01000367
VERSION     KCOD01000367.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 710)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 710)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..710
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40913pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>710
                     /note="ultra-conserved element locus uce-6873"
BASE COUNT          237 a          138 c          148 g          187 t
ORIGIN      
        1 ctgcacaatt gcacctcagc agaactgctg ctttgtgtga aggaagcatt ggagaaatta
       61 tttgagttat ttaggtgacc tatatgatgt tgcatgttgt cctaaaagga cattttatag
      121 ctctataggg ttatgtctgt tgtgtgtata catgcacaca cactctcaca tacatagaag
      181 aggggaagtc attttatttt acccaaatca gctacttaag taaattgaga tatatagaat
      241 ttaccaatga aatgagtgat ttgatgtgaa taaaagaggt ggtgtgttgt aaatcagtac
      301 tgacagccaa atgggaaaaa ttgacagagc actgtaatca ctcccaacat ccactgaagt
      361 tattgatcca aaacctctat aatccccttc acataacaca agcaatttca tataatacct
      421 gtaataacag tgcattcaaa ctcaagtagc catcagaagc tttgtatcta atggcaaagc
      481 aggcctctgc tgagtaagtg taacaactag agcacaaaaa cgccgatgac tcttgccttt
      541 cataggtagc ggcctgcgat aagagctagt tcagaagata aacagttccc aacgccaagg
      601 aaaatgagct attaattgcc ctcttgctaa agacatcata aaggccctaa agccctgggt
      661 gcaaaacagg gagaaggtaa gcaggatttg gggactgata acgccccggg
//
LOCUS       KCOD01000368             430 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 41015pyr ultra-conserved element locus
            uce-2325, sequence.
ACCESSION   KCOD01000368
VERSION     KCOD01000368.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 430)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 430)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..430
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41015pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>430
                     /note="ultra-conserved element locus uce-2325"
BASE COUNT          135 a           88 c           88 g          119 t
ORIGIN      
        1 ggtcatgcgc agagcacagc caagcagtga gactgagatt gtattgacaa gaacaagatg
       61 aatggccccc tggagactat ggggtttgta tgctcgtttc caccaccttt tcatcctttt
      121 gtaccccctt tcagttcata tgcagattaa accaagtcca cactaaatac tcttttttac
      181 tttagttttg gaaggtaggt ggaggatcta aatatttatg aggcctctgg tttatgatgc
      241 actcttgttg aatgttgagg aattacgtta atgaatgcat gcctgcacac acagacacag
      301 aaaccaggca aaaccacaca aagcattgtc agctctagtg tcggcactta ctaaaacagt
      361 tcccattttt aaaatccatt gccaggagaa aaataaattg tatggctgag tacaaaagaa
      421 agaacaaagt
//
LOCUS       KCOD01000369             674 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 41124pyr ultra-conserved element locus
            uce-7622, sequence.
ACCESSION   KCOD01000369
VERSION     KCOD01000369.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 674)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41124pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>674
                     /note="ultra-conserved element locus uce-7622"
BASE COUNT          213 a          136 c          124 g          201 t
ORIGIN      
        1 actaattagt ctcagagatg aaaaatgcat tgctcagatt ccagataatc ttaaacaaaa
       61 cacttcatgc tgattttatt ctgcttctat ctgtgcaaag attaaacaaa acccacagtt
      121 ggtttcatct gccaggctct tcatgtcaca gaaagagaaa aataaatcca aggcaaggtt
      181 tgcagtgctc tgagtttgct catccttagt ttatcttctg caaatgagca tgtataaaac
      241 agtccaccta ctgttccagt tgctacgata taatgcagtt ccactgaatg atcctgttaa
      301 cctaaccttc aatttgctgg gatttgaact ctgaattaca gcttactaac atagtttaac
      361 agctggtaca agggcttctt ttgaattttt aatcacatga attaaagatt gctggagatg
      421 cttttcagac ctccactagc agtgatccaa tgtacagaaa gacaagtata ggtagcccca
      481 tgaggattaa gagcacaaag gtactatggc ttgtaaagct atgctgctct ctgcttgcca
      541 aattaggaat agtggtgcaa attattcaaa gataaattca cattatggct ccaaatggcc
      601 ccctttttag ctcgcaacac aatgtgcatc gccggagcac aggttttgaa gataaagctt
      661 agtttagcaa aatg
//
LOCUS       KCOD01000370             425 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 41229pyr ultra-conserved element locus
            uce-6726, sequence.
ACCESSION   KCOD01000370
VERSION     KCOD01000370.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 425)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 425)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..425
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41229pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>425
                     /note="ultra-conserved element locus uce-6726"
BASE COUNT          144 a           73 c           73 g          135 t
ORIGIN      
        1 atgacgtttt cactctttag aagaaagagc aatattgttc cagcgtgcac agaacatatg
       61 ctaatcagct gtactcttca ggcgcaaatg agataatatg ctcattgttt agacactgga
      121 attgttcatt acaaaatgac acagtgtttg ccaattttgt cttcattata aatgtaaata
      181 ttaactggtg atatgcaaaa gaatacaaaa agtcaacagc aattaattgg cttctgcagt
      241 aattagcaac tgtaaggcaa acacttagga gccgttgtaa ttgtctgcat taggaataca
      301 cctcctgtac agatctaatt agcaatttaa atagttcaga aattatatgc ctcttgcctt
      361 tacactccct gaagtactgt tcattaatag ggaaaaaaat tgctagtaaa tgtcatttgc
      421 attgt
//
LOCUS       KCOD01000371             639 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 41338pyr ultra-conserved element locus
            uce-596, sequence.
ACCESSION   KCOD01000371
VERSION     KCOD01000371.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 639)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 639)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..639
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41338pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>639
                     /note="ultra-conserved element locus uce-596"
BASE COUNT          192 a          109 c          134 g          204 t
ORIGIN      
        1 ctgcctttgt gtccaggagg agtgttccag tcctgatttt tactaatgtt atgatacctc
       61 cattatattg tgagtcttta attcatttct ttgcggagca gtagctttta acaggttaat
      121 tacaaaaaga agcagaacca taataaaaag gcacagctcc tgcactttta agaaatagaa
      181 gtgctttaaa gtggtatttt ttatatgagt tgttcttgct tagtttttaa agtgtgactg
      241 gtgtttagtt aaatctttta cagactcagt tcactgaagg tgacagaagt actcacttga
      301 gctcaatgaa aagtagacat gacagtaaat ttttcagtca gagacaggag atcttgttat
      361 aggagtcagt atgggggtca gggcagagcc tgttgatgat tgaggaaaag agaagtaaat
      421 tcattctgct tcatgcactt tgtcaagtgc cagtagctta ccattgagaa ctagtcaccc
      481 gttctagtct tacggcccta gaggtcactc atttgatata aatcatagca ctgcataggc
      541 tcagcaacct attgccattc cagatgaaat aaaaagagag gaatgcttca ttctgaatta
      601 aaatggctgt gaatatccca ccacatgttg ctgtttaat
//
LOCUS       KCOD01000372             806 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 41452pyr ultra-conserved element locus
            uce-1849, sequence.
ACCESSION   KCOD01000372
VERSION     KCOD01000372.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 806)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 806)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..806
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41452pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>806
                     /note="ultra-conserved element locus uce-1849"
BASE COUNT          239 a          171 c          157 g          239 t
ORIGIN      
        1 aaggtagccc cttcgctgga aaatggaacc actcagtaca ctttgtgtaa aatgttgaaa
       61 cttttaccat taaaaggtgt cgacagtgaa gctctcactg cagtatgcct gattttaatg
      121 catctacagt aattcccagt cagttgtcta tgctatgaga tgaatgcatt tgaaccagaa
      181 tcgttctttc tgcatgccac atgctcatcc tgtccatgtg cctagcaagg atgagcttca
      241 caaggccttt gggatcagcc ttaagtgctc aaagagatga ggcaggcagc acctacttgt
      301 tacatggaca gacacaaaga ccacagaatt ttcctaggtc cgtcaaattc ttttctgctt
      361 ctttcatgtc cttattgatt tggtccattc cctcttcgat gcgttccagt tgttctgatt
      421 aaacacaagt attttatccc cacagaatga agcagatgga aaaggacaaa gaaaaaaaga
      481 caaaaacttc agacattcac tgtgacaaaa aactggacac cacatagcag agccggtacc
      541 cagtacctac ttgttacaag gacatatgaa aaggccacag catttcccta aatcttttaa
      601 atttttctcg gcctccttca tgtcttggtt gatatggttc atgccttctt caacacgatc
      661 gagttgttct ggtcaggaca aagggatgac agtgtggaat gaattgtatt tttgtttgtt
      721 tgattttgtc ttcaacagaa catgaaaaat gaccatgtag aactgagtta ataatgacat
      781 tacaatgcat taatctgagc tgatgc
//
LOCUS       KCOD01000373             683 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 41563pyr ultra-conserved element locus
            uce-4705, sequence.
ACCESSION   KCOD01000373
VERSION     KCOD01000373.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 683)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 683)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41563pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>683
                     /note="ultra-conserved element locus uce-4705"
BASE COUNT          207 a          131 c          125 g          220 t
ORIGIN      
        1 tttccaagaa ttccctgaag cttgctgttg tttctgacaa tattgaaagt ctttaaattg
       61 caagaacaga atacacattt gaagcttaaa ttgtgttgtg cccagtcttt gagtcacctg
      121 tacaacgtca aatccattct attttggaag ttgtggtaga gcaggagtgt ggtcctgttt
      181 tcctcctccc actagtgagc taggaacttg cactattgca tgtgggctgt caattagcat
      241 tatctccatt tgttttagat cgagacaggc ggtctgtttc aacaatgaac ctttcgaaac
      301 atgttgatcc agtcattaac aagcggctct cctcctcatc tgcaacatta ctaaattctc
      361 cagacagagg tacagttttg aagaaaagag tagcaagaaa gaattttcta ttactttgca
      421 cataaaacaa gcttctgaag tcattttcat ttcatctaag tggtagtgga aagacttcaa
      481 atgtgacaag taaatggttg aacatttttt cccatgagaa caaagaattc ttgtttttta
      541 aaacaagaga acttacctaa acaatcctac ttcagcaaac aatgtgcttc tgtcaggttt
      601 ttagtaaatg aggtacaact gttgaaagaa tacatcactc catagtgcat gcaatcgtgt
      661 gaccttttat ttgcattaga cca
//
LOCUS       KCOD01000374             594 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 41672pyr ultra-conserved element locus
            uce-5817, sequence.
ACCESSION   KCOD01000374
VERSION     KCOD01000374.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 594)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 594)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..594
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41672pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>594
                     /note="ultra-conserved element locus uce-5817"
BASE COUNT          170 a          129 c          146 g          149 t
ORIGIN      
        1 gaggaggaaa accagggaat cgtttcattg tcattactgg ggagccacca gatgcttggg
       61 attccagggg ataaaccttt caaaagctcc attgacactg gggtatgtca ataattccac
      121 gtattagttg gatgcaaata ctacacaata aggtatggaa agaaactgta attgggaata
      181 ccactctatc ttctgactga gcccattgtt gaactccagg ctgaacctcc gaccctttac
      241 tttggaggga cacaataggc tttgatatga gatggtggga aacgggcttg gaggctcatt
      301 tcgcattcag ctgcaattca tcagcttggc tgggacttct agcagcttta atgaccactg
      361 caattgatgg ttaaatcaat ttgtgacggt gacagcatgg ctggccccta gactgtaaca
      421 attcgggatt acaacaggca gaaagggccc cgttattcag acatgcgtgg tttctgctca
      481 gctcagagtg ggaacaacag caggacaaaa tctcacaaaa acactggaga atgcacacat
      541 tcactccagt tgactacaca ccaccatggc ttctttgtag cgtgatgagg tgag
//
LOCUS       KCOD01000375             327 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 41772pyr ultra-conserved element locus
            uce-4810, sequence.
ACCESSION   KCOD01000375
VERSION     KCOD01000375.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 327)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 327)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..327
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41772pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>327
                     /note="ultra-conserved element locus uce-4810"
BASE COUNT           95 a           49 c           91 g           92 t
ORIGIN      
        1 gtcttgtgtt agcagtgggc tgtttcagat tatggtaatg tgtttctgat ttgagtcgtg
       61 ttgaaagcca gaacaaggca tctcatgtgc agtcctcttt gaggcctgct gttttcaatt
      121 cctcttcaca gaatgggctt ttatttgatt tgttatgggg attttttctt ctgttgccaa
      181 aacagctgca agcctggaag ggaatgagac acagggccac agcaaacttg ttagctcata
      241 agagaaacag aatgttccag ggagagaaag atgaggggaa gagagatgaa agaagagggt
      301 aagtgaaagg ataaagagct ctaaaga
//
LOCUS       KCOD01000376             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 41992pyr ultra-conserved element locus
            uce-5164, sequence.
ACCESSION   KCOD01000376
VERSION     KCOD01000376.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41992pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-5164"
BASE COUNT          191 a          140 c          104 g          199 t
ORIGIN      
        1 gtggctattt tgaaaaaatc ctctgcttac ttacatgaac aacacagaga aaagagttaa
       61 aagtggcaca taatctttcc aatgacatat ttagccagtt attcaggcta taatgaagct
      121 gtgtaatgaa gtcaatgtcc ttgaaagttc ttcatcaatt tttttctcat ctgtcagcat
      181 atccacttgc cgacacaata ttaattaaac acaacatttc ctggagtgtt gaagtgaagt
      241 cccatcactg ataatgaaca ggtttaggag agtcacatcc caacaaaatt actttttaaa
      301 ccagccttat taagcagaaa attagaccta aatcacccta caacatcctc attaaaagcc
      361 actgatcctt ggctgcttct atgttctaac atctttaatt agcaaactgc tagtctatct
      421 gccatgataa atgctattaa tcttaccttt catttgcttt ctcttaacct atcgtttgcc
      481 cacttcaggg aacacaggct tccaccagga ctggttttat tgcgtttaat gtccttgtaa
      541 ggatgaaaaa tggggcagtc acgggttaaa cgcgatgact ctctccgccc tcgctccatc
      601 actgaatttc agaatttgtg gatatctcgg atgg
//
LOCUS       KCOD01000377             419 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 42101pyr ultra-conserved element locus
            uce-7959, sequence.
ACCESSION   KCOD01000377
VERSION     KCOD01000377.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 419)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 419)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42101pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>419
                     /note="ultra-conserved element locus uce-7959"
BASE COUNT          129 a           74 c           83 g          133 t
ORIGIN      
        1 atgcaattgc cctttggtta aagtctttcc tctcagcact ttcctgtgca catagcccaa
       61 ctaataatat tcaggagcaa gtgctttcca gtgtgacaac tgattgcact ttgaagcagt
      121 aaatggctga tttcataatt ggtataattt ttcacaagta cctgaatgtc atatacagaa
      181 agaataagca acctggactt aatacgggag ctttttcaat tctcctaaaa atcaataatg
      241 tattaaaccc ctctaactga ttaaaataat gtgaaccctg agtaggtttt gtgaggaagg
      301 caggtttctt caagggtggc agatttatgg caaaagggtt aatacatggg gagaacaggg
      361 atatgttaca gatggagtcc gttttcctaa ttaaactttt atcaagattt tcccggttt
//
LOCUS       KCOD01000378             708 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 42211pyr ultra-conserved element locus
            uce-5021, sequence.
ACCESSION   KCOD01000378
VERSION     KCOD01000378.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 708)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 708)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..708
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42211pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>708
                     /note="ultra-conserved element locus uce-5021"
BASE COUNT          250 a          103 c          140 g          215 t
ORIGIN      
        1 tccttttaga agacaaaacg gtaaattgaa tttagccatt aagaaagaca acatcagaat
       61 taggctgaag agaataataa ttggatctaa tagaactgac aaacaatcat atttcttccc
      121 attaaataaa tatgttataa aaaatttatt atgaaatgcc acattatgca agccaggatt
      181 caaagatgag ttctttgcat taagtacagt agatgccatt aaggaaaaca gtcaatatgt
      241 cactaagcca cggcctgtaa aattaaattg atttggtaaa tgtaagtaag atagatctgt
      301 ttgctttcat catcaatttt gagagggtga acaggtgatg tcaccaacct gggagcgata
      361 aagatgcagg accatctgga aagctttgtg atggatgggc aactgctttt ggatagtgac
      421 agtgctgtgg tactttgtca cttgggatgc agtacttaat aacttttcaa taccatcata
      481 ataaatttca ctgccttatt aatatagaaa tggtgagtta ttactgtgat ggctattgta
      541 aataacaaga gatgcagctg tcagaagctg attgtttggg catgtttctt taagcaacac
      601 agttgacttg ggataatcag cgtatgtcta tatcagcaga gtttattgct cttgtcaaaa
      661 gaaaaagcgg cattattcaa aaattatatg aagtccataa taaacaag
//
LOCUS       KCOD01000379             641 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 42320pyr ultra-conserved element locus
            uce-5292, sequence.
ACCESSION   KCOD01000379
VERSION     KCOD01000379.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 641)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 641)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..641
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42320pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>641
                     /note="ultra-conserved element locus uce-5292"
BASE COUNT          161 a          142 c          149 g          189 t
ORIGIN      
        1 cttgctttct gttaacctct gtcgttctgt gtccacagac cccatgggac cgtgagtgtg
       61 cagggatgct gctcgtcacg ggcgacataa acaatgtcct tgttaggagc tgctccaaga
      121 ccctgtgaag aagttggctg ctggagccaa gcaggagctg ggactgtgcc tccccctggg
      181 ctttagcccc tcctcattaa gcaggtccag gctattgatt gggagcttgt gtttggaaga
      241 gtcttactta ctccatgcat tatcttgaca gattgatcag acctgattga gaacctctta
      301 aaggaacgaa cagctgtaat gggaaagttg gactctgtca tccgttagga tgattctggg
      361 agcgagaaga acgaggctga catcttggag caattgtatt tacaattaac atggctgaaa
      421 acgattgcct ctattgatcc ccccttcctg caattacagc cccattgttt acattccagc
      481 acttcagtta taaaaaggaa attcaataat tattgcatta tttaaagtta aagtgccaca
      541 gagtttgctg gctatgctta ctggttgatt taacgttcag taaaatccat gctgagctct
      601 ccatccttag gctgagcaat atttggcttt taatgagact t
//
LOCUS       KCOD01000380             242 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 42422pyr ultra-conserved element locus
            uce-6030, sequence.
ACCESSION   KCOD01000380
VERSION     KCOD01000380.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 242)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 242)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..242
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42422pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>242
                     /note="ultra-conserved element locus uce-6030"
BASE COUNT           98 a           31 c           50 g           63 t
ORIGIN      
        1 taacctctgt cattacctaa atccatctct taattaatat gagttaatat gattaatcaa
       61 aataatgaga caaacctatt aaattagggt gtttaaatta caaatggaag tggtaaaggc
      121 aaaggggctg ataacgaata gctgcagtca gagatggagc tagctcttga aatgatatgt
      181 gacaaacagc agagagaatc aagaatgagg gaaatcagca agattcatgt gagaaaaata
      241 tt
//
LOCUS       KCOD01000381             652 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 42528pyr ultra-conserved element locus
            uce-1989, sequence.
ACCESSION   KCOD01000381
VERSION     KCOD01000381.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 652)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 652)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..652
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42528pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>652
                     /note="ultra-conserved element locus uce-1989"
BASE COUNT          194 a          131 c          120 g          207 t
ORIGIN      
        1 tttgatttac acaaaattac ctcagtctga ttttctgtga aatacaaagg gtacaatggc
       61 tttcttctgc ctgtgccatg cctgaacaga ggaaaagagt ttcactcctg ttgtttattg
      121 attttctaga ttaagaatcc cagtgagaga attgtaacag acaaccataa aattattttt
      181 ggtgtgctta tttgcctttc ccttgcatct atttggcctg tgcctgtaga caattatgcg
      241 ttccagccta gactcaggtg ctaataatga aggacaaata gaatcatatg tgtaaacttc
      301 cccttctgat gaaaatttat attaactttc tgccactgta aacagaactg catagctcag
      361 tgtccctgat gaattggtga tgaattcagt catttatatc ccaggaatct gtgcatttat
      421 gggaaaagat gaaaaccgtc tgtattgtgt aaccttgcac tttttgagta agaaaaagaa
      481 aacaccagcc tgtttagttc atcacttaaa gtgtgtaaat ttcagctcaa ataccagatt
      541 tctgtaggac tcgcttccac ttcggggatc cctgccaata taaacaagcc aaacagtgca
      601 gagtgccatg ttatcggtac aactgtgaac atatacactt gcagcctcct at
//
LOCUS       KCOD01000382             379 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 42635pyr ultra-conserved element locus
            uce-1442, sequence.
ACCESSION   KCOD01000382
VERSION     KCOD01000382.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 379)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 379)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..379
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42635pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>379
                     /note="ultra-conserved element locus uce-1442"
BASE COUNT           91 a           71 c           63 g          154 t
ORIGIN      
        1 cctgatgtcc tgcaggtaaa ggcttggctt tctgctgatt tattaaaaga aaaatcttat
       61 attttactgc tcacatgtac tctctagagc gtggtcacat gaccaggata atgacaatct
      121 gtctctctgc taacatttct ctactttggt tatttgtttg ataaagtgag gagcttccct
      181 tttgttgccc ttcatcagag cttaatgtct ttactttggg atcaatatac tttatgaata
      241 attttatttc cttctatttt tatggtcttt tctcctcatt atcatactga gtttattagc
      301 tggtgctgtc agtatcttta ccctgtcata tgttcctgag gtacagtaaa tatcacttgt
      361 gttgtaatta atatgcaca
//
LOCUS       KCOD01000383             730 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 42743pyr ultra-conserved element locus
            uce-1810, sequence.
ACCESSION   KCOD01000383
VERSION     KCOD01000383.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 730)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 730)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..730
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42743pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>730
                     /note="ultra-conserved element locus uce-1810"
BASE COUNT          226 a          115 c          132 g          257 t
ORIGIN      
        1 tgattaggtt aaacaaactg gtaggtttat ttatctccct aatacattat cagagaaatg
       61 ggaagcaatc ttcttttgtt tcttactcct gtgatcatag aacacttgcc aaagttatgg
      121 ctagccaaaa agacagaaat aaatttgcta aaaatataag ccttctgttt agcagagttt
      181 ttgagccata ttttgaaatt gcagggccat gtttacttca aatcaagctt atagtcaagt
      241 ttgaggcttt gtttgtatag attgtcctga agtagatcct gatatttaat taaaatgaca
      301 ctaaatcaca ttgaattgat aagacttggc atctcaaaca aaggtaattg cccgtattgg
      361 ttttgtacaa aaatagagct gcttggaaaa tgtgcagcca acacagactg tcaactccat
      421 ttatagatca atatgtgaaa accattgatc aggcaggcat gtgtaacagt aacactttgc
      481 atttatttgt tgtttttata ccacgttaag gcttacagga ttatcggctt ccaaaatatt
      541 ttgacttcct cgtaaatatg ttatctgttt aatgttaatt gcaagacagt ctccagccct
      601 cttttagagt attttcagtt tcattgctat gggtagtttt agctgaaaaa gggattattt
      661 caatctctgc aagatcatca gagcttcttt tatagtgtag tttatttagg gaaagttttt
      721 gagaatgact
//
LOCUS       KCOD01000384             608 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 42851pyr ultra-conserved element locus
            uce-2480, sequence.
ACCESSION   KCOD01000384
VERSION     KCOD01000384.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 608)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 608)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..608
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42851pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>608
                     /note="ultra-conserved element locus uce-2480"
BASE COUNT          213 a          117 c           81 g          197 t
ORIGIN      
        1 aattaccaaa tgtattctct tcatctagca aaatgaatgg cattttcctt gcaaaggaaa
       61 ttcctaattt tgaggagagg aagttgaaat taatctgaaa accaaggaaa tcactctgca
      121 atttgcacac aaaaatgatg ggtttgtttc attaaccgat gcctgaaaac aacatttaaa
      181 ttgacacata aaaccagcaa ttgtcttaat ttgtgtggtg cactccacac aaaagcccta
      241 aatatgttca aattagagca agctgcttga ttgtcactgc agtctcatgt catattaatg
      301 catgacaaac attaaaccat acacttaaat ggcaatttat atcatttaaa tgtttactgc
      361 cacaccagat catcactcat ttaaatgtga ctttctgaca gctaatttca gttaattttc
      421 ctcgattcac ttaattagaa ctttcaatca agaaaagacc tgtacatatc ttagacatca
      481 tatcattctt tttttactat tacttttatt aggatactga attgctgaaa gcattcttta
      541 aaatgaatcc ccacacagta tagtatctgt tgggacaatc aaatagcaat accttacaac
      601 atctatgc
//
LOCUS       KCOD01000385             631 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 42962pyr ultra-conserved element locus
            uce-535, sequence.
ACCESSION   KCOD01000385
VERSION     KCOD01000385.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 631)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 631)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..631
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42962pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>631
                     /note="ultra-conserved element locus uce-535"
BASE COUNT          202 a          146 c          108 g          175 t
ORIGIN      
        1 atccctagga cacgctctta gcacttcaat gcattagcga acctttgcta acgaagaaaa
       61 aattaaagta cagcaaattt caaagcacca gttgtaccca acatcattaa aaatttataa
      121 aacttcccct gaacatgaca agtgtttggt ttaaatgaag atcagccgta agaaggagca
      181 gaaatcttgt tattctttgt ctctttctct tctctttctc tcagacctcc cccaaccacc
      241 accacctcaa tccagctgaa atatgtaacc attacagagt gacagtttga cacacaatga
      301 cctgtcagaa cattcatctc tcaatgtttt attttagtga ggagccaaac tgcagaaaaa
      361 ataagcaagt tgtttcaagg cttggaatga gatcaaacat ttctggcatc cccacttacc
      421 agacctttga tttacaatgg atctgtcaga ggctgattag acagtgtgtg tttaaaaacc
      481 tatagatgtt ccacaattgt acaagctctc cccttccctt gcatttctgc tctttgtttg
      541 aatggagaga ataaggcagg ttacactgca gaaccggaaa acaccacatg caaaactgca
      601 ggtagctgca attaaacctc ttaggcagga g
//
LOCUS       KCOD01000386             685 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 43072pyr ultra-conserved element locus
            uce-780, sequence.
ACCESSION   KCOD01000386
VERSION     KCOD01000386.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 685)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 685)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..685
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43072pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>685
                     /note="ultra-conserved element locus uce-780"
BASE COUNT          221 a          124 c          118 g          222 t
ORIGIN      
        1 cagcatcaaa tgctttgtac aaatccaggt cagtgtcagt tgcttttctc ttatcctcca
       61 acactctgtt tataaggcca ccaaatttgt cagttcttgg caagttgctt tttccatcag
      121 ctgtaaataa cgtgcttaga ttccctcagt gcatagttgt ctaaaatagt tgtaggaatc
      181 tatggaaaac agagtaatgt catttcagca ctgtatcatc ctgcatcaga aactaaagca
      241 tgcaaaccga aattgatttg taacaggtac cttattagaa gcaaacatca agaaaactag
      301 aatcaatgtt gaaacaaaaa tttgtcttgt aagcaatcct gagtgaaatg tgttgacaca
      361 gcatcacatt ctgtagtttt tgcatgcttt tcaaagcaca gccatctcga tctgggagag
      421 atgaataatt gactgatcac tgcataattc aacgtactgt tgtaaaaatt caaggtctgg
      481 caaatttgaa gcttttcttc tttattgaga ctgaggttaa agtttcaatc aaccttgaag
      541 aaacatttaa atagcacagg gatgcatgat ttattaaagt gcatattatt ctccttcttc
      601 attaagcttc cttacataat gtttatgtga agtttatgaa gtgtacctca taagttgagc
      661 aaagattacc ttaaaagata gcact
//
LOCUS       KCOD01000387             559 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 43182pyr ultra-conserved element locus
            uce-857, sequence.
ACCESSION   KCOD01000387
VERSION     KCOD01000387.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 559)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 559)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..559
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43182pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>559
                     /note="ultra-conserved element locus uce-857"
BASE COUNT          184 a          108 c           97 g          170 t
ORIGIN      
        1 caagacctag ataaatattt caaaaactat actatttgtg agcagagcag gtcactacca
       61 tttcccagtg catttggagt tcatgtgaaa taagggcaga agagtgatga gctgcatttt
      121 taacatgggc atatacagaa tagttgtcta gctgatagag aatgtgtaat gcaacatctg
      181 caccgtacgc cttgccaaag cccatcccaa ataaatgtag tgcattctcc ctagtgcaat
      241 taactcttgt actctggcag gttgtgctag aagatcatca aggtagatta ccttccagca
      301 tatgaactaa atacttacag gtgttatatc atcagttatt acttacaaac ttctgcattt
      361 aacaagacat ccaggcaaat gaatgatcta atttatgaat tatttataag aatttcacag
      421 catgctcctg gcgtcatcca tggccttttc caggtcatat gacaccaatt agagctgaat
      481 tttaaattat tcaataacct gaactctctt gtcatttaac atatagatat caatgcagta
      541 aacaagttaa gtctaatgg
//
LOCUS       KCOD01000388             582 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 43396pyr ultra-conserved element locus
            uce-6750, sequence.
ACCESSION   KCOD01000388
VERSION     KCOD01000388.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 582)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43396pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>582
                     /note="ultra-conserved element locus uce-6750"
BASE COUNT          189 a          122 c          100 g          171 t
ORIGIN      
        1 tgcaagggaa gatggatcat gggaattgtg tatatgcatt caagacagct tcctttccct
       61 ctatttaata taatcacaac atatttccgg actccagact agcagggctc tttatccagt
      121 taacattccc aaggctgatg cctgaagtat ctaagatcac tttcaaatgc cctttctaac
      181 aagacctgag caagaggcca ctaattttca ctgaacaaaa agccactgga gagagatccg
      241 tttgtcaata tcaactggtc cagcaatttc ccatcttcag acacatcagc ctatctgagc
      301 tggcagatgt ttagacaaga ttttataaat tgttcaatat cagaccataa tgaaccccaa
      361 ctgaccattc caaagcagct aaaagcattc aggatctccc ctgctgggat ctaataatgc
      421 tctcacgctg gaacattatt aatcatggaa taaaatagat gagcctcttg aaaaataagt
      481 gtatgattga ttaaagggca atctaagaag ctattattct tgttttataa ccgtaagtta
      541 tattcactca atttatcttt tggggaaaat aaatgattgc tc
//
LOCUS       KCOD01000389             816 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 43505pyr ultra-conserved element locus
            uce-1980, sequence.
ACCESSION   KCOD01000389
VERSION     KCOD01000389.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 816)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 816)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..816
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43505pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>816
                     /note="ultra-conserved element locus uce-1980"
BASE COUNT          252 a          134 c          173 g          257 t
ORIGIN      
        1 ttacagacat tagattttct ctatgactgt cttttgggaa tagaataata ttaaacaggg
       61 aagcaactct ggagatttat ttaaatagct caagagagtt ccttgttggc ttgttgcatg
      121 agttgggtgt taaaacctct ctgaccacat aatgattatg aagtcatacc tataataaat
      181 aagttttagg tcagactcag ctgagaccat aataaaactt gtttccttgc ttttaatgtt
      241 tgaaaggtag tagtgcagca tgtgtgtggt cttttttgca gacgtgatct gcatttaatc
      301 tgggaaaatt aattccctaa gctgctggca ggcagcatgt acttgttaat tattcaggtg
      361 gatgacaaat gcagagcaga ggttctcgca aagacaaagt ttgtatgatg catgtttagt
      421 aactgatagg cttgacattc tgtggtgtct tactcagtgc taatcctaat aagctgcctg
      481 atgagatgaa cgcctatcct cctgtccttt agagagagaa aacagagatt tgaaagaact
      541 tcattatagc aataaatccc atactttctg ttattcccgg tgaaaagaga tcttgtccag
      601 atgaataata cacacaaaga gtcagaatgg tagtgtaata cagagtagtg aaatgaatat
      661 tgtgaatgcc tccactgtaa aagcagctgc agtttaactt tattgatagg gcaagtttat
      721 gcaggttaat gctcttcaaa atcttcggca tcattctaca agtgatacaa tcctgtgggt
      781 gtatgacttc acaaagattt gcaagtcacc agggaa
//
LOCUS       KCOD01000390             454 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 43614pyr ultra-conserved element locus
            uce-3674, sequence.
ACCESSION   KCOD01000390
VERSION     KCOD01000390.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 454)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 454)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43614pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>454
                     /note="ultra-conserved element locus uce-3674"
BASE COUNT          162 a           68 c           70 g          154 t
ORIGIN      
        1 gttcatcacc gccgtttaag tgaatttaat aaaattattt ttctaaactg ttttagatgc
       61 catatctata atccataaaa tttattgtac ctttatgtag aattatactg gagttgaata
      121 tataaatcaa tttataaggt ctaatgacat acaaacgctt aaaaactaaa ggcgatgtag
      181 taaattcaaa ttaccattac aaatgtaagc tttgtagtca gtgtgtgacc cgctaaggat
      241 tatatttaac tcccctgaga gtggtttatc ataaaacttt atacttttat tacagtgaat
      301 tattaactcc tccatgatgt gagtcattcc atgctctgac tatagctttt ttaatgacac
      361 tataatagac atcttgctaa tagcagtagg attgctacct ctgaggttag aaagaaaaga
      421 tacaaatatg agaaaaataa ggacctgtaa gaag
//
LOCUS       KCOD01000391             541 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 43722pyr ultra-conserved element locus
            uce-46, sequence.
ACCESSION   KCOD01000391
VERSION     KCOD01000391.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 541)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 541)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..541
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43722pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>541
                     /note="ultra-conserved element locus uce-46"
BASE COUNT          170 a          102 c           91 g          178 t
ORIGIN      
        1 atggaggcct gtgtgtctgg acagaccaaa tactctgttg ctgatgcgat tcacagtttc
       61 gcctctctga acagacgttt tcctatagaa gatgaagaga gaaaaaaagg aaaaaacgat
      121 gcagactctg attcagagag gtgatttcca tatatcctta ctttctgaga ttatatatcc
      181 atacatacac acgcacatgc ttcacttttt tgttgatgta atactaagat aatgaaaaaa
      241 ttaattgact gagattttat tgagctgtga cagctcatca tagaagtctt cacacacacc
      301 tccacactga attaatgaat gcagtagaaa ttcaattatc tgcattctga ttatgtgaat
      361 ttcatttagt cagacttgaa ttattcgcgt ttaaattatc ttgctaaaaa aatatccaac
      421 tgcactccaa atggctaatt aaaagtccaa atttcctgtc tctctttgtg actggagata
      481 attaaagttc tcctctgtta ctcaggcttt gagtgtgttg tgaaaaccaa tttcctcctt
      541 t
//
LOCUS       KCOD01000392             675 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 43832pyr ultra-conserved element locus
            uce-3554, sequence.
ACCESSION   KCOD01000392
VERSION     KCOD01000392.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 675)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 675)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..675
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43832pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>675
                     /note="ultra-conserved element locus uce-3554"
BASE COUNT          237 a          147 c          113 g          178 t
ORIGIN      
        1 ctgcaccgct ctttgttatc tctagttgaa agacagtaca gataaagaaa tctgccacat
       61 gaaatttcaa gactcatccc agctggccat aaaaataaca gaatttcttt agagaccaag
      121 cctattacaa tgttacaatt cccacttaac atttcccaaa ttaaaagtcc ttccaataat
      181 aacagaaatt taactctaaa agcctgcatt agtgagtgct agctccttcc aactgtttgt
      241 tcagagactc tccaacaagc atacagcaca ctgtaagaat tcaatttgga aaccatcatc
      301 taaagcacag aggagaacag gaaagtcata ttgctataat gcttagatta tcaatcatct
      361 tgacagttta ttggctttat caccacacat accattaaaa tgatgtctgg cctagaatgt
      421 caggaggcga acattaaaca gaccaggatt aaaaagcaga tcccaaacag cactccagta
      481 aagtttccca tccactctga aattagttag agctgactaa gtaactggca ctagactttg
      541 aagaaatata cagcctaaaa ggcgcagagt caacacagac ctgacgagct gataggtaat
      601 gtcatgttat ggcaactcta aagctcctgt cgttgattta tcacatactg tgtgcaacag
      661 aatgattgct aatgg
//
LOCUS       KCOD01000393             529 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 43944pyr ultra-conserved element locus
            uce-6732, sequence.
ACCESSION   KCOD01000393
VERSION     KCOD01000393.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 529)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 529)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43944pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>529
                     /note="ultra-conserved element locus uce-6732"
BASE COUNT          144 a          131 c           97 g          157 t
ORIGIN      
        1 catatgttta tgggaaatgg aacaccagac tccctacctt cagagtcctt aatctccagt
       61 ctaagcactt gaacccgatg ataggcgtat atataaaact ttaagtattt ttctctcgcg
      121 agtttcctct tactgggaag gcttccaaat cccttctagc ttcatggatt ttctcagctc
      181 ttgtgtttgc tccttctcca caccttcccc agcgcagaga ggcacatctg tctgttttct
      241 gccttatcaa gcagacatct acatctgcga ggacttcctt ggctaaaaac ctgtatctga
      301 ttgtggtaat aaagcgctac ttcctcagtt caaaacatac atcagacagg accaattact
      361 tcaaatgact catagcaaca aaagcaaggc ttgcagagcc tttgaacttc caccgcttca
      421 aaggtgtact gaaatgtggt tatgaggcga ttgtctaaaa ttgccaaatt accaggttcc
      481 aagctttgac tttgttattc tgagcaacga gacaaaggca gctcgttca
//
LOCUS       KCOD01000394             803 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 44054pyr ultra-conserved element locus
            uce-4895, sequence.
ACCESSION   KCOD01000394
VERSION     KCOD01000394.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 803)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 803)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..803
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44054pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>803
                     /note="ultra-conserved element locus uce-4895"
BASE COUNT          143 a          216 c          221 g          223 t
ORIGIN      
        1 gcccccctct tttcccagcg cccactctcc ggagagcccg ttgtgcttgc ccagcttcac
       61 cccggccggg ccgcagtgct gagtgccctc ggtcacgccc ttggtggccg tggccacggt
      121 gcccagctga gtgaccgccc tgccaccaac agccggagcc ttctcgccgt tgactcccgc
      181 tgcgtttttc cctttcctgg tggatttggg tgcctgcctg gagtttttcc cttgcggctt
      241 atcggttcct ttgttggttt tgggcgattt tttccgggtg gctttcgggg aagagctttg
      301 gtttgtaccc acattcttgc tggatgaact tttcctcttc gattttgaca ctttgctatt
      361 ggtgctaatt tgaccagatg gctcattaaa tgttgacaag catggactct tttcgagaag
      421 gctgacagaa tcttcatcgt tgaacatatg gaactggaac tggtgattat ttaaagcaaa
      481 cccattatct gcctgatcct cggtctgcag gaccccacag ttccacttga ccttctcgga
      541 gctgttgagg gtggcctggg ggctctcctg aaagcccttc agggtgccca gaggcttggc
      601 atcagagcca gctatctgcg gggacaggtt gggagtgtct ggaggggaca tctccgaaag
      661 cgacgactgg cggaacctat caggcgtgaa gttggaaatg tctaaaaggt ccgtggactc
      721 cttcaaaggg gtgatttcat ctatgctctg ctggatcact agcttgggac tgcagtgggc
      781 caagaaatca tcattaatat cat
//
LOCUS       KCOD01000395             864 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 44166pyr ultra-conserved element locus
            uce-6187, sequence.
ACCESSION   KCOD01000395
VERSION     KCOD01000395.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 864)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 864)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..864
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44166pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>864
                     /note="ultra-conserved element locus uce-6187"
BASE COUNT          278 a          192 c          179 g          215 t
ORIGIN      
        1 gaaggttgtc agcaggagaa gacagacagg atgggggcaa cagccaccac atgattgaca
       61 cggtctccta cctgcctgaa cttgacccgg cagtttattg caacaaagtc agcacagaaa
      121 cactcagttc aagggttact taaaggcaag tgcttaccag gttccccaac aatacacgtc
      181 atctgaaagc taccacaaaa gacctacaac gctgtctgac tgaacttcac aatgccgagc
      241 tgaggcctgg ggtttttgtt gtgtttgttt ctattcagcg atcctccaat gctagcctag
      301 aaatgacagt aggtggaaac gctatctttc attacacaaa gtataaatag tgtaatctat
      361 cagcactgtc aatcaagatg attgattaca ggctgtcata gagaagagtg acatattaga
      421 aaagttttgt taacaatgcc tattgctagt cagcctgcca cagaagctgg tgattaatgt
      481 gttgtcagcc tgtaatccca cacccctggc taatgaggca ggaatttatc atctttacag
      541 agtggcagat gtcagaagga aaggaatcca agtgctggaa acaatatact ttttcttacc
      601 acgcctgaca agtctgacag gcctaaaaaa ccacaaagaa gctttgtgta agcacaaact
      661 taaaatgaag aactttcatt tggcatcttt gctttaaata gtgctgcaaa tcagcctcta
      721 tccctcaaaa agggcacaat aaaaagctct atgaactctg aacccatcct tgacaactag
      781 gaaatctcag gaaaggtttc catggcaggc aaacagagag ctttctccgc aagagaagca
      841 gcaagtaact tttaacttta cctg
//
LOCUS       KCOD01000396             738 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 44276pyr ultra-conserved element locus
            uce-7515, sequence.
ACCESSION   KCOD01000396
VERSION     KCOD01000396.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 738)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 738)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..738
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44276pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>738
                     /note="ultra-conserved element locus uce-7515"
BASE COUNT          203 a          147 c          160 g          228 t
ORIGIN      
        1 ttcataagcc agcccaggca aaatgtgcgg acttgctctg gtaactgaag gaaaccttag
       61 ctgcttccat cacgtaatca ctgcaataga ataataagtt agctgaaatg atgctttatg
      121 cctactcttc agcattccat gggggggggc ttttatttat ccctcgtggg ctgcaagaat
      181 gaagatgggt atgatttttg caagggtgaa ataggttgtc tgtcaattgg gtttaggcga
      241 cagtctgtct gcaggccgta agatgatctg catagtgcca gaggaaagca ggcagaattc
      301 ctggcttgca agcacagata ttgatctacc ttagccacct aaacaatgcc tcacctgttt
      361 gccttgtcca taccttattt tacgcagtct aatgcttgtt ttgtttgact tttcttttat
      421 ttctgtggat ctgagctttg atacactttg gggagtacat aaacacagtg ttgtacttga
      481 acatcaccat cctgcagagt aatctagtgg ctctggacca cccctccctg catgagaaca
      541 gcagtgttat tgaaaattat gggtgagcaa ctaagtaagt aggccacata cacaagtgtt
      601 tgatctatca gactagtgtc caatgacatt gaatgtgaga tgctactaat tactgcacta
      661 tgtactccca gttaaaattt cttaaattga agctactaaa aggatctatt tttataattc
      721 agctgatggt tacaagat
//
LOCUS       KCOD01000397             700 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 44383pyr ultra-conserved element locus
            uce-4171, sequence.
ACCESSION   KCOD01000397
VERSION     KCOD01000397.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 700)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 700)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..700
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44383pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>700
                     /note="ultra-conserved element locus uce-4171"
BASE COUNT          197 a          143 c          150 g          210 t
ORIGIN      
        1 gatgctgcag gtttaattaa gtacgtggca gttaatcagc cactgaaaac aggggcctcc
       61 actggggaat tacctgagtg aaagcagacc aaacatgaag gggctccctt gaaactctag
      121 tacttgtgct tctatggtga aatggaaaga aagttatcaa ataaaatctg tttgcttgtg
      181 gctgtactat gacagctttg ttagtcctaa cagatgacaa ggattattca atcaatatag
      241 atttaccttg agagttttgc tgttttcagg cacctccagg aaaatgacag ccattaaata
      301 tgtacaaagg ccagtctagg gcctgtggcc tctagcttta agctgctgcc ttttctgagt
      361 tatgtcagga tcaatttttt ctaatagata tcacttatcc tacatgataa tcaggctatc
      421 atagtccatt gattacatga cagcctgatt taggtctggt ctagaagata agaaacacag
      481 ggaaatctct tgcctgtatt gtcagggaat taaattcctc ttttccccct gaagttattt
      541 cctgtgtgca gaagccaagt gagctgttga ccagttaccc tccctcatac caccctcact
      601 cctttgtgga attgcgaacc agagctgaag acttggaacc agcattttgt catctgaatt
      661 tggaaaggta gttagcactg attgctgttc cagtacaagg
//
LOCUS       KCOD01000398             665 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 44495pyr ultra-conserved element locus
            uce-2140, sequence.
ACCESSION   KCOD01000398
VERSION     KCOD01000398.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 665)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 665)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44495pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>665
                     /note="ultra-conserved element locus uce-2140"
BASE COUNT          218 a          138 c          106 g          203 t
ORIGIN      
        1 ccacaacttt acaaagttgg tactgctgct attcctggca tagcttaaag gtctttgttt
       61 ctgtaaattc aattgagtgt tcctatttct aagtctagca agaggttcta attattgtta
      121 gaagcctaat tagcatttag tattacatta caacaactgc agcaaaattg tacccgttct
      181 ccaataaaca gtattcacag tgtgcaatca agctgctgta cgatgcaatg agaattaata
      241 gcactgcacg acaatggtaa atcctacaac tcccgctgtg tgtgtttaat aatttttcac
      301 tccttccaga ttgttcccat caagcgcaat tcccaagatc ctaatcagct ttcctcccca
      361 tcaatactac atagggatct gagcactgaa aattatctgc aatttcaaaa agtgctttgt
      421 tgcattatta ggccactgac ctaagaggta atgggtaaat agtttctgaa aaatgtccaa
      481 agcacaacat aaattaaagc ttatagtctt gcctgctgtt cttaccagag ctgtaactgc
      541 aaacttacat aaaatcctta actacggtgt tatacacaaa aattagtaca aagatgaaaa
      601 ggtttatatt taaacaagtt cctttgctac acaaataata caaagttgga gagccacgag
      661 cacct
//
LOCUS       KCOD01000399             688 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 44604pyr ultra-conserved element locus
            uce-1566, sequence.
ACCESSION   KCOD01000399
VERSION     KCOD01000399.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 688)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44604pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>688
                     /note="ultra-conserved element locus uce-1566"
BASE COUNT          198 a          128 c          116 g          246 t
ORIGIN      
        1 atgagacaat acagttattt aagacatata tggtatttta agataagagg tacaaccctt
       61 ttgccgcatc cttgtttaca gaatctgatg aaaacttggg taaaagcgtc tgcatttttc
      121 tcacatagtt aaatgattac tcataaatta acatccttgt tattaatagc tacctcttat
      181 agacattttt ggagggggga acattacact tttctctatt tatatcccat gtgtctgtcc
      241 tctgtcattc tgtttctctt taatcttgtt tgagtatacg gctcactcgt ccttatttta
      301 ttgactcaat cacaggcaca ctgtcacttt ttataaaacg gtcactgcag aatcacatca
      361 agcaaattct tgattctgca gtcagtaatt tagtgccttt atggaattgc aatttcaggg
      421 ctcactgctt gtttttctaa aatgtacttt aggaattagt tactccagcc acaaatcagt
      481 tgaatttatg cacagttgta atacagttta tggcctcatg gtacattgct tcaaaaacag
      541 cagatgtgaa attatgataa atataatgag tgtttttttg cctgatctac tgaagtagag
      601 aaggatctgg agcgtgttta cctatcccat acagtacatt taatgtctta gtcaggactc
      661 ctgacaaagg ctgattaatg tcctcatc
//
LOCUS       KCOD01000400             486 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 44713pyr ultra-conserved element locus
            uce-4004, sequence.
ACCESSION   KCOD01000400
VERSION     KCOD01000400.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 486)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 486)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..486
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44713pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>486
                     /note="ultra-conserved element locus uce-4004"
BASE COUNT          132 a           68 c           95 g          191 t
ORIGIN      
        1 ttaatacatt ccgtcaggga cgtaaatttt cccttaggaa gtgtgtcttt tcggttttgt
       61 tcaaatgaag ttgcttttgc agcaccaaag acttaatcat ccatttccaa aaggtagcta
      121 catagacctc aagtatactg tagtgtagag atatggaagg tgttaagctg aggctgtgtt
      181 ttagcttatg ggcaagtaat aaattgtatc atttatcttg aatgtatcat agataagctg
      241 ctatataatg attgccactt cagatagctg tgaaattagg tgattaacta gttctttctt
      301 agccttctaa tttctgtaca agtctaatta catgaaatag aagctgggtt tgtttttttt
      361 ttattttgtt ttcatgtttg aagtgtcgta actactatac tgtaaatgat ggaagatgat
      421 tgcatatgtt tttttggggt gtgttatttg catcagtatt ttatctccat taactttgag
      481 ctcatc
//
LOCUS       KCOD01000401             622 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 44822pyr ultra-conserved element locus
            uce-23, sequence.
ACCESSION   KCOD01000401
VERSION     KCOD01000401.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 622)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 622)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44822pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>622
                     /note="ultra-conserved element locus uce-23"
BASE COUNT          210 a          112 c          100 g          200 t
ORIGIN      
        1 atacagatat atagaaataa aattagtatt agtctttcca cataaaagtt cacacggcac
       61 aaaacatttt gtgttgagtt ccctaaatca atgcttaaag ttgaaattac tgcattgaac
      121 gggttctttg aaaagcaacc cattgatttt aatctgcttg aagcaatcaa ttactccctg
      181 tcctctttat tccaaactgt aatgaaaact aaactgcgtt gtcttgaaaa ctaaatgtga
      241 agatgatcat aaacagaatt taaactccat ggattattca tatctaccca tttagatttg
      301 ccatttccat tatgagtaca tttgccatga gcatttaatg gacatctaaa agggaattca
      361 ttaaagcagg agctgttggc agcacttatg ggcttcagac tgctttatgt ttgcctttaa
      421 tagctcacta ttataaaagt gatatattgt gttcatccca ttagtagttt gcagaaaggt
      481 ctgtaagaca taacaaatcc ttttgagtat tgtcagaatc aaaactaaat cacaggcaag
      541 cggcatcccc aacaaggtac cattttaggt catctaaatt ttgatgatct tagccaagta
      601 agaatttaat ggccctatag ac
//
LOCUS       KCOD01000402             663 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 44930pyr ultra-conserved element locus
            uce-6582, sequence.
ACCESSION   KCOD01000402
VERSION     KCOD01000402.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 663)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 663)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44930pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>663
                     /note="ultra-conserved element locus uce-6582"
BASE COUNT          185 a          140 c          127 g          211 t
ORIGIN      
        1 aagagtgttg tcattgtttc agcattcagg gttcatgcat taccttttcc tacaggctgc
       61 aggtttgcct ttttattttg aggaattcaa aaggaactca tctagaaatg ttgcttgtcc
      121 attagtgcta ttgtttcttt aaaaagctat accagtttgt actatgactg atcaaaatga
      181 ctatcagaaa caagacacct cattttgtct ttcttgccaa ctattttagc ttatttgcca
      241 tgagcacagg gtataattaa tatcacacag gagccagcat tgtcattttt caaatcattt
      301 ccctggaaat gttctacacc tcttaatggc cctgctaatg ctgtagctgt catgttttgg
      361 acagctgcgc ttttacaaga caaactcagc tgcgccatgt gcctctctgt agacttttta
      421 gctcaacggc tcagaggcca tgaatgccag ctggtaacgg ctatatggaa atctttgatt
      481 aattttttta cctctagacg ctgactgttg ctcaaatgtc accttcccag ttttcatccc
      541 tagccagtat tgatggatga agaatcaact gaatgggcca aaaatcttat gactaattaa
      601 agcaaataca ggctgtccag atgtggagag aacacaaagt ctggaaaggg gccagatcac
      661 aca
//
LOCUS       KCOD01000403             574 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 45031pyr ultra-conserved element locus
            uce-3517, sequence.
ACCESSION   KCOD01000403
VERSION     KCOD01000403.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 574)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 574)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..574
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45031pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>574
                     /note="ultra-conserved element locus uce-3517"
BASE COUNT          166 a          114 c          108 g          186 t
ORIGIN      
        1 aaaggcattt cttcatattc tcagttaatt cagtctaaaa gtgtcacact tattcagcag
       61 cagttaaaat agtctgtgat gagagcatga caatttccag ctaaactaga ggataattag
      121 aaatgccccg tagcaggcaa gtcagtgctt caatttattt gctgtttatt accaagtccc
      181 tgccccttgg gtgtaatgac tgtaaagcag cacctgcagc ttcccagtgt ttgatttagt
      241 gctgtaaatg gtgctcagag agtagattaa gctggaatgt gatcaaacct tatttgcaat
      301 ccgattatac aaactgctcc ttgcactgac cagattgaag taatttccct atagaaacgt
      361 tacactcact ttggtgtaaa aatgattaac atttgctgac tgtaggtcag cctttcactt
      421 tcagtgtaat tctttatcag gcaggatgcc catctttttc ttgtgtttgc cacatttgtg
      481 tatcatgcgg tatttaacca atggatataa tcaacctccc aggtcttctt gatgaatgat
      541 tgtaataaat aagcactcca gcataagcag atta
//
LOCUS       KCOD01000404             468 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 45136pyr ultra-conserved element locus
            uce-4835, sequence.
ACCESSION   KCOD01000404
VERSION     KCOD01000404.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 468)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 468)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..468
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45136pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>468
                     /note="ultra-conserved element locus uce-4835"
BASE COUNT          169 a           78 c           82 g          139 t
ORIGIN      
        1 actaacattt caggtcatca gataactcaa taaaatacaa tcttaaaaga agtaagaaag
       61 catgaataaa aatatataca acaatttctt gtgtagtcaa agtatcagca ttttccatat
      121 agaacatcca atattttgct gcattttaat taaggtgtct aaacattatc acaaagaact
      181 gcaaattggt cagagcacgc agtaaggaaa attaagctct aaaggctttt tatcaccata
      241 tttcaggaac caagggtgta aaatgttcta atttgggata tattaaaagc cataaaaggt
      301 ctttcaaaaa gattaatggt actttgcttg gatttaagat aagggcttta gctggttgga
      361 aaagcagggc cctggctaga cccttgaggc attcatcttt acagccactt ggaagatttg
      421 taaaagcgtc tgcataacct caagcaaacg cactgcgaca tttttttt
//
LOCUS       KCOD01000405             741 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 45248pyr ultra-conserved element locus
            uce-893, sequence.
ACCESSION   KCOD01000405
VERSION     KCOD01000405.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 741)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 741)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..741
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45248pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>741
                     /note="ultra-conserved element locus uce-893"
BASE COUNT          231 a          124 c          130 g          256 t
ORIGIN      
        1 tgttactttc tctgcccaag gatttttaca tcttgaaatc aaagttgatg tttctagtgt
       61 cactcatttt aaccagaaat gtttgctttt atcatgttgt tagtcttggt cacttgtact
      121 taattaagat ttcagacgca gagttgccaa tcaacatact aaatgtacct ctctcctctg
      181 ttttcacaag caggcaccag gagattcaac actgtagttg atagctggta tgtgatatct
      241 gtctcctggt ttatagcctg gtacaataat gtcattgccc catgtggcaa atggtgtaag
      301 ctattgtaaa actgtttgtc tatgtgatta agacattgca gcagtgtgca gcaccagcca
      361 attacttttt ttaatttaat tatagcagaa aaaagagaat agcataatag aaattcttgt
      421 catagggaat atgtaaaatg taaattgaag agccatgaaa atttcatgca ttggcaggct
      481 gatttgttct tattttcaac ttgttatgaa gactgagttc tttaaatgca ataaaacaag
      541 acatagcagt gtttagtaat tacttagttc tacatcaaaa taattatata cagtatgtgt
      601 ttgcaatcca ctctgctgcg tatgaatgta aaaacgaaca cttcagggcc catatcaatt
      661 ttgtctttta gacagtgtaa ataaagctga atcttcaact ttcaaattaa aactgataac
      721 cttgggcaat cagggctttt a
//
LOCUS       KCOD01000406             675 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 45360pyr ultra-conserved element locus
            uce-6621, sequence.
ACCESSION   KCOD01000406
VERSION     KCOD01000406.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 675)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 675)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..675
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45360pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>675
                     /note="ultra-conserved element locus uce-6621"
BASE COUNT          219 a          148 c           97 g          211 t
ORIGIN      
        1 tttgtacctg catatcttgc agaaaacctg aagtataaag tttgagaaaa caggtttccc
       61 atgaccacaa aaaaaaatca cataaattcc tctgagtaca ctaacagctg tgcccacttg
      121 ccaatgcatt tgaggttata cacaaagaga aacacaacca cgctccatca ctttaccaca
      181 acctcagagt ttagctttaa atgatttctg aggaaaggct tcctgcagac ttttaactta
      241 agtagttgta actacaactg caaaacactg ttgactggtg gactccagag acttgttcat
      301 tacctgtcat taaatgtttt aaagtttgca taattgatcc agccaataag tcatcattga
      361 tttatagggg tctgtgctga agagttgctc attaaaaatt cataacactg gtatgtgtct
      421 ttacaatcca ttagctgttt acgtacccac aatcctaaga ttgattgacc ttggactgag
      481 attctcatgg actctgctca aaaaaccccc tttttcttcc atatttttat acaagcccac
      541 agtatagaaa agcaatactt cagtcttctc ccttgacagc tatactttga tttttcctct
      601 ccatcaaaac tgaaacttta cttgaaataa tgaataaata aagcatactc cataaacagc
      661 tttccactat tattt
//
LOCUS       KCOD01000407             540 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 45473pyr ultra-conserved element locus
            uce-3785, sequence.
ACCESSION   KCOD01000407
VERSION     KCOD01000407.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 540)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 540)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..540
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45473pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>540
                     /note="ultra-conserved element locus uce-3785"
BASE COUNT          178 a           89 c          120 g          153 t
ORIGIN      
        1 ctgctgtctg cacttgtctg cctgccttgg tcctagaatg gcatttgttc cttttgtgat
       61 ggtttgggga aggagaaaag catcactgag agatatttac tgcatgtatt ttcatcctga
      121 gtgtgtgcag ataaaggggg gcaaataaac aataaaagaa tggaaacaaa attacagaaa
      181 tttgcaaagt ttgacaaatg gtggccagga gttgccacaa gctaatggct tgcaatgatt
      241 aataagagta aaaataattg catttcatta agattgatga caccccattt aacctccctt
      301 ctcgtttcag ccctaaagtg gaaagagatg aagttctcat ctataatagc tcctgtaaca
      361 ttaccatgga aactgaggca gagatggagt gtgagggagc taatcagcca attactgcca
      421 agattactga gatatggaaa aactggggcc agaacactca ggtataatca aatctttttt
      481 acagactgat tcaaacagct taaaattaaa tttgtaatat tgtgtacatt taaagggggg
//
LOCUS       KCOD01000408             358 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 45583pyr ultra-conserved element locus
            uce-7882, sequence.
ACCESSION   KCOD01000408
VERSION     KCOD01000408.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 358)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 358)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..358
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45583pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>358
                     /note="ultra-conserved element locus uce-7882"
BASE COUNT           88 a          107 c           75 g           88 t
ORIGIN      
        1 gagccggcct ttgttcccgg cgctgctccc acagagccca gtctggattc gtcccctatc
       61 actcagttca tttgtacaga gctgtctgtc aagtcacatc gccccgccgc aatctgaaac
      121 accctccgaa cagctgccac tatcaattac tctcccaggc agccctgact atcaggaaga
      181 gaactggagc gagcacttgc cagttttaat aaactgtgtt gcccaagtca tttaacctgc
      241 tagattgctg tatgctgggg ctgtaacaag ccttcagctt ttcaacctag aagaaagcaa
      301 cagtggcaaa aagctgtcag cttggtcctc aaaattaact tccaagggtg tcttcccc
//
LOCUS       KCOD01000409             826 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 45695pyr ultra-conserved element locus
            uce-7903, sequence.
ACCESSION   KCOD01000409
VERSION     KCOD01000409.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 826)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 826)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..826
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45695pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>826
                     /note="ultra-conserved element locus uce-7903"
BASE COUNT          186 a          216 c          212 g          212 t
ORIGIN      
        1 aaaaatgagc aaatgtagcc aagtgacaga gtgtaaacaa cactccctga actaccaggg
       61 acatcaggct caaacgcccc gtgcgcttcc ttcccggagc ctcgtctccc gctaagacct
      121 caaagggtta agcctgcaaa ttgccttgct gtgcttctgg gacagcatga aggatggctg
      181 ccattgccac ggtcagatat gacagcgcca atttgatgtg ctgccatcaa gggccttcta
      241 agagccgagc gccctgatgg ttttgtgatg cgaacagtcg catcgcaaaa tggttttcct
      301 ctcccgctgc ctctgcttcc atctgctgct gggccgaggc acagccggct gcctgcctgt
      361 cacagcatgg attaaaatta gctggggagg aggcactcag ttgtgctaat tacattttaa
      421 tcattggaaa tgtgttggca aatcaagcct tgattgccat ctcggagcct gtctcctcca
      481 gcagagcgga ggggctgtct gcattagctg ggccctgctg ggcccagttc tctcacagaa
      541 gatggaatat ggtgcctgct ggcccaccac tgagactgct ttggcacatt attaaaaagc
      601 cacaaggctt gtttcaaatc atcactgtgt gagctctgct cattctcaca tccctgggta
      661 ttccagccac ttggtacttt taactatatc tttagtttac cttgtgggct caaaaacaat
      721 tttgcatgcg tgggtggagg aagccagagc ttttctgcag ctcgtggggc tgggaacgga
      781 gccagttgtc aaagcgcctt tcttgtcagc tgtaaggctg cactga
//
LOCUS       KCOD01000410             524 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 45800pyr ultra-conserved element locus
            uce-6534, sequence.
ACCESSION   KCOD01000410
VERSION     KCOD01000410.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 524)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 524)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..524
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45800pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>524
                     /note="ultra-conserved element locus uce-6534"
BASE COUNT          175 a           80 c          108 g          161 t
ORIGIN      
        1 agggaagatg taaatagtac acatatacat atagtttgta tatgtgcatg taatatatta
       61 aacacatatc atcaagtatt taatggttaa tatgaggaaa ctgatgtcat tccatgagga
      121 acaatggtgg cactcagcca tttctttcct gaatagctgc tgtgttttta aaaataaaaa
      181 atcagggagc tgctgtagca aagtctgtag cattcacagc atgacaaaca aattagaaaa
      241 cagcagatgc agcacaaatt aagatgtatt tagcacagca gcccatcaga tgtgtgaaag
      301 tcttttgtat atcagctttg caaggttgat gtattgcact ttagacagct gataatgaac
      361 ccttctagca attagaggtg gaaatactga ggatttgaaa ttgtgctgtt cccagtgggg
      421 gaaaaccctt agtgagaaat ttactgcttt gtgtgtgtgc actgagcaac acaaagcaaa
      481 tgtttcagtt tatgcacatg tagattttga atttctcatt tata
//
LOCUS       KCOD01000411             692 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 45911pyr ultra-conserved element locus
            uce-2335, sequence.
ACCESSION   KCOD01000411
VERSION     KCOD01000411.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 692)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 692)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..692
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45911pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>692
                     /note="ultra-conserved element locus uce-2335"
BASE COUNT          208 a          145 c          112 g          227 t
ORIGIN      
        1 ttcttttgac actgcatctg tcataccatg tctgacccag atgtacagag tgagcccagc
       61 agattatttg tcaaacaaat tctggaacct aatatttggg tcttttaatt taattggtat
      121 gcaaatcaag aaaagacagc atttgttctt gatacagttg tcacttctaa ttctggtaac
      181 attcattatc atgcttacag atcttacact caacatctgc caatactacc taaaccacag
      241 gaagttgaca aacctgtgca aacttctccc tctcgctttt tgttatctgt tccatgcaca
      301 ctaattttgt gcatctgagg cctctgctcg ccagaattat gcctgcttcc taacacctct
      361 gcctccagag ctttggattt gaaattgaat agacacagag ccaatttatc ataggatgac
      421 atgtgtcatg ttcatggtat aaccagaggg acctactgta tgcactgtat ttatcctttt
      481 gttgtcaaca cggacaaaga caataccagc aatagacaga tactaaattt ttaaagtaca
      541 atactactta actgttgaga gttggaattt ttaaatgtag tctcattttg tttaacacca
      601 gatttctttt gtcagataat catctgtcat tcaggcatgc agcatattaa aaaatgtgag
      661 taccaaatac caatgtatta gcagcaagtc tt
//
LOCUS       KCOD01000412             886 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 46131pyr ultra-conserved element locus
            uce-671, sequence.
ACCESSION   KCOD01000412
VERSION     KCOD01000412.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 886)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 886)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..886
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46131pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>886
                     /note="ultra-conserved element locus uce-671"
BASE COUNT          230 a          212 c          213 g          231 t
ORIGIN      
        1 actcttcgta caaaggactc caggctagaa gtttctcgag atgataagtt tggaacactt
       61 gcactggagc tcatgggtgc cccagcagcc aacaaagaac tgactgagag tctgttactt
      121 gccgaagagc ttagaggtcg ttgggaagct gcttctttat tagtcagttc agagactgaa
      181 ctcacgtcag gagagcttac gctaacaatt cccatggata tagcactgga ctctccagga
      241 gtacgtattg agttatcagg acctaacttc ctctctgcat tttcgtttcc catgtccgct
      301 gttaaggtgc tggtgctcgc actggaagat gaccctatat cagcctgagg cacactatca
      361 gcggaagaca gaacaacaat gggttcatgg acgtcagtgc ctgaaactat attttgctcc
      421 aatacacttt ctgatctccg ctccattttg gtcgagccca agctgatgtc gctgctactt
      481 gccacgctac acacagaact gctgcttcct tttctacttg aggagcctgc agcagcagtc
      541 gtcttgtctg gacagttgtt tttcaccaag ctgctccatg actgcgttgt gcctgaaaca
      601 gtggatgaaa caggtttggg tgatgccgct gaatcagggt cgtaccctgg tgcaagcttg
      661 aggtcaaact ttccttctgc gcccatacgg taagagttag agccaccagc atcccaggtg
      721 acatcaatcc agcctggaaa gggacaggag tttgtgagat ccagcagaaa gcagacagga
      781 ggcgtgtcag acagtagctc cacaatgtgg gatcagcttc tcatgtctga atcaacatca
      841 ctaagtgaaa gaagtattta aatataaaca atttagtatt ctgtaa
//
LOCUS       KCOD01000413             744 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 46242pyr ultra-conserved element locus
            uce-5196, sequence.
ACCESSION   KCOD01000413
VERSION     KCOD01000413.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 744)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 744)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..744
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46242pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>744
                     /note="ultra-conserved element locus uce-5196"
BASE COUNT          253 a          135 c          136 g          220 t
ORIGIN      
        1 aatttgtctt ttagaatgac aaattgtatt gaatgatgag tggtagaatg agcaaggtga
       61 actgcaggct ttcccattag agattacaga caaatgaaga cacaagtgaa atgagggtcc
      121 aacatcaagc acattttttg aagactaaag gggatgagtg tttctaaaaa aagaatgact
      181 aagagtaaag aaaaaaagat acattgtgag tacagtcttt cctcttagag cattgtgcac
      241 atcattttac tcttttttca caagcatatt gctgagtaac cttttatgat ctaatgaaag
      301 aagtccatac ctttcctgat ccctccatca gtagcacacg tgtaatcacc tgttgtcagt
      361 aggaaacatg ttccccctct tctgtttttg tctcttgtac tagaacgtct gatgggaggg
      421 agcctttcac caggtgagag tggctgctca cttcctgcac tgtcttcacc tgataacact
      481 ggttaaagca ccatgcccat ttacagacaa taatgaatga ggaaatgaga catcacaaag
      541 agcttacgct gaatgccaga tattcccatc actcaaaaag ttgttataaa gtaaatcagt
      601 agaagaaaac aagattgcaa ttcatcatta atcagtacaa aaggtatacg ttttgttcaa
      661 gaacaaatga tcttttgact ttcctgtttc cttctaaaat ttatataaaa ttagattaaa
      721 ctaacgtgaa ctaagaaata gtca
//
LOCUS       KCOD01000414             783 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 46353pyr ultra-conserved element locus
            uce-2142, sequence.
ACCESSION   KCOD01000414
VERSION     KCOD01000414.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 783)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 783)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..783
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46353pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>783
                     /note="ultra-conserved element locus uce-2142"
BASE COUNT          227 a          145 c          134 g          277 t
ORIGIN      
        1 ctgctgaagg tctcaataga aaacttttga gtaacaagaa tttgcataat tttggggaat
       61 attttgtttt caaagtaatt ctctttttca cctgcttagg acttgaccat gtatggcttt
      121 agttagtttt gttgatggca gctcatgttt aaccaactgt ttttaattta caaattaaac
      181 ttgtcagaag tagaaatcct tcccttggaa cccttccaat atgtcaagaa ttaattctaa
      241 tgaaaacagc attgcctaaa tgcaggatgg ccagttactt actttattta cacaaagtcc
      301 ttctcagttt ctttgataaa agcagctaaa tctttttcct ctttcatgtt ttgtcagcac
      361 ttgattcctt ttgtcccctg gctatttgcc tagctgtgga caataaggca ggaagaatag
      421 aagcagattg ttggaatggc cctcaataaa cctaattatg acatgttgac tgcactcacc
      481 atgacatatt caggagatcc aggcttattc aattaccctt gccaggtttc tctttcagac
      541 ctaaagttat cctttgactg tttgtatttc tgaacagtat tcatgttcat tgtgaaagaa
      601 aatcccctgg actttgaggg gtttctaagt tgatgctgtt attgtagcta atttttatta
      661 actgaatgat aacatgataa agaaatagac ttttgttaca taataagaac aaatcagtgt
      721 gtgctcaaag ttacaccttt ctttcctccc ctgcagaaga ctgacagcta acttgagtta
      781 ata
//
LOCUS       KCOD01000415             712 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 46465pyr ultra-conserved element locus
            uce-3619, sequence.
ACCESSION   KCOD01000415
VERSION     KCOD01000415.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 712)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 712)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..712
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46465pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>712
                     /note="ultra-conserved element locus uce-3619"
BASE COUNT          192 a          150 c          151 g          219 t
ORIGIN      
        1 aaaaccttac tgcctgggtg tgcttctcaa tgtcttaaca atgtccacct cagacgcaca
       61 ttttcttttc cttgaatagt ggtcaaatat gcaggctttt cccttttgtc atgtcacaga
      121 ctttggttca tgtaacatga tccattggtt gaaattttgg gagggcagtc agatcatgtt
      181 tgctctccat gtaaaatgat gagcacccac ttggtcaaat agtaggaaaa ggcgcctttt
      241 tctggcctca atttgaaatc ataccaaatc ttcgatggac attttttgtt tcctaaagaa
      301 atacttactg gttgctgtag gtgaagatgc ctcaccttca gtggatgtag tgatgggttt
      361 agtatctgtc atggtcaggg tcacaggtcg caccgcactg tgatggggag agggtgccaa
      421 aactggagta aaatggccag gcactttccc tactacttga ccactgctgt taggctacaa
      481 aacaaaacca aaagaatgcc ttgtgaaaca tacacattgt gttgaaggaa cctacctttt
      541 ccagaattgc cctgtgtttt ggttctaaat aggctatgac tttccatgtg atattttagg
      601 tcccttctca gattcttcct ccctgggtgt ttcaaaatat atttgaaatc ccatgacagc
      661 aggagtaaac tgaccagcca taggccctaa tgcatgaagt attaagagca aa
//
LOCUS       KCOD01000416             594 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 46576pyr ultra-conserved element locus
            uce-3546, sequence.
ACCESSION   KCOD01000416
VERSION     KCOD01000416.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 594)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 594)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..594
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46576pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>594
                     /note="ultra-conserved element locus uce-3546"
BASE COUNT          176 a          116 c           88 g          214 t
ORIGIN      
        1 agttgtatag atcaagcctt cctagaacaa atgaaataca gaacattata gtcaaggtat
       61 caatataatt ttgcagcttt aaaaattcca tgttcttagc aattgaactg tacaatgaag
      121 ttgttttgcg cagacttgat tgttaacatg catgaatttt ggaaggttaa gatgcttttt
      181 gtcaaaaatt agtttttgtc caggtaatgt aattgatgaa agttttactc tatacagttt
      241 gaaatgctca ctggtactct acctttccaa gggaaagaca gaaaagaaac catgactatg
      301 attctcaagt gagtacactc ttatttatat atctcatcag gtattctaca gggatgccct
      361 ccgggctgca atatctaatt tctactcttc cctcattttc aaaggtactg gtaaatcctc
      421 actccctatt ccatattatt aattcccttt gctgcctatc taatttgctt tctgccatac
      481 caggtacaaa ggatttcata gcagctctgt aatagtaact tctccaacca tatgatcttg
      541 cccatcttat gtccataata ttttttaact ttcttatcct ttttgataac ctgt
//
LOCUS       KCOD01000417             826 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 46684pyr ultra-conserved element locus
            uce-334, sequence.
ACCESSION   KCOD01000417
VERSION     KCOD01000417.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 826)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 826)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..826
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46684pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>826
                     /note="ultra-conserved element locus uce-334"
BASE COUNT          237 a          185 c          169 g          235 t
ORIGIN      
        1 gattccaagg ctctgctcca gccctggctc ttgtacctat gcataaaaaa cattaattac
       61 accgattagg caccccagca taactgagtg gtgagcagaa gttgcatgag cacctgcacc
      121 tttaggtacc ctgttgttaa cacgggctgt ctgtccacaa tttattagtt gcagacattt
      181 aacttacact cacttgagca gaattaagag tgtttacttt cctcataaga gggcagtcag
      241 atatgtacca attttgtttt aactgtggag agcagggagc tgggagcggt gtggggaagg
      301 gatccaggaa ggcctaatca atcactgaca gattacagct aaagccactt ccatacccat
      361 taaagcagga caaatgcaga attgcaactg aacaacttct agttttaagc caacagtggg
      421 acttcctagt tatttatcaa agtcattgct ggtaagcagc atgcctcact gctcaattgt
      481 acttcacagc agacagagct gactgaagct tcagccatga aagaagtgtt tatgccctca
      541 gctgtggtgc tgtcagccct ctggaattta ctgtaaatca cacagctttt attgcaagat
      601 ttagtagctg atcctctgtg ggctctattc actgcaagct tgttactatt tggatgttag
      661 cctcagtcca taaagggact tgctacacat catcaaacag cagcggaaaa ccaaaggttt
      721 catttttcaa ttttctaaac cctaaactcc tcaacagtca ttgaatttca ttgcagaaag
      781 tggaagtcta ctttattacg gtactcaatt tccccaatgg agttat
//
LOCUS       KCOD01000418             517 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 46794pyr ultra-conserved element locus
            uce-3350, sequence.
ACCESSION   KCOD01000418
VERSION     KCOD01000418.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 517)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 517)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..517
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46794pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>517
                     /note="ultra-conserved element locus uce-3350"
BASE COUNT          166 a           97 c           89 g          165 t
ORIGIN      
        1 gtgtgcatgg ttgtaatgac atttcctata tcacatctat caggttacaa gcagctaata
       61 attttcttct tctactcaca gccgagcata atggcataca ctcataaatc aacatcaaca
      121 tggaacattg cttagcaaat ataaatgtat gtgcattgca gaatgatcag agattacgaa
      181 aatatatcag aagtcagaag tagctgctgg agaaatgcta tgtctttagt ttattgagat
      241 tgtttggagg atcctaatgt actgtcactg aaagaataat ttttccttta caatctactt
      301 agcaaagatt tattgatcct tttccccttc atagagaatt actgatccat tttagaaaat
      361 cagattttca cacctttcat gagaatgtgc acagcacagt tctctaggga ttgccaagga
      421 agttgacttt gacatgaaat ccctaggtac cagcacacaa cagcctatag tctcatcact
      481 gatttgttgc acagggtggt aaaatacttt tatacat
//
LOCUS       KCOD01000419             248 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 46898pyr ultra-conserved element locus
            uce-6991, sequence.
ACCESSION   KCOD01000419
VERSION     KCOD01000419.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 248)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 248)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..248
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46898pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>248
                     /note="ultra-conserved element locus uce-6991"
BASE COUNT           80 a           49 c           51 g           68 t
ORIGIN      
        1 aggaagatac acaagtgtgc caatgtaaat tgctccattt ggagggctaa ttgcactaaa
       61 aggcagcctg atctgtggtt tttctctatt ttacattagc agctgagctg tcagatctga
      121 aatggaaact catttttaag gctttgcatt tacagtggct tcaacaatga aaaatgttcc
      181 ctgacagtaa tagaaggcaa acctcattag agaaacttaa accaaagcgg cacagtgcta
      241 aagccctc
//
LOCUS       KCOD01000420             605 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 47000pyr ultra-conserved element locus
            uce-5932, sequence.
ACCESSION   KCOD01000420
VERSION     KCOD01000420.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 605)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 605)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..605
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47000pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>605
                     /note="ultra-conserved element locus uce-5932"
BASE COUNT          197 a          144 c          110 g          154 t
ORIGIN      
        1 atctccttta atgatgaaac cctggcacca cggttttatt tttcacaaca cggtgcagtt
       61 aagaacccca ctgttattat gaaaatttcc tcagcgaagg agctccatca cattaccagt
      121 gcaccgattc atcataacgt gcctcgctcc tgctcatcaa caagtctgag tgatgaaaag
      181 atccaatatt atcctgacag tacttcatgc acattctcaa tcacacatta ttacagcatc
      241 catattaatt ttcactgaca cgcgtcctag gcctgttcaa attaggcaaa ccaacgaggg
      301 ggagttgatg aaataccagc atagccacag ctcattgcat tccaatttgc atgcaaatgg
      361 tttatcagga aaattccatt cccagcaacc agcaagtgaa aaacaaccgt aatctacact
      421 tcagggccac catacagagc ttaatgaatc gcaaagaaag aaggaagtga cagacctatg
      481 agaggatcga tttccactgg cagctggtaa ggctggtctt gtacagcacc ttgatgagct
      541 ggaattcagg aaagaagatt ttaaaacttt gcatacatga agccacatat tttataaatc
      601 acagc
//
LOCUS       KCOD01000421             660 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 47111pyr ultra-conserved element locus
            uce-3008, sequence.
ACCESSION   KCOD01000421
VERSION     KCOD01000421.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 660)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 660)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47111pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>660
                     /note="ultra-conserved element locus uce-3008"
BASE COUNT          197 a          121 c          121 g          221 t
ORIGIN      
        1 gtgggagagg aggcagctca tctccctgtg tagagcctaa ttcgtgtctg ttggatttaa
       61 atagctgcaa cagaaagaca agtgtctgga ggtgacggtg ttctgctctt accaacagat
      121 gacaatcatg tcttatggtt tttgatttga cagaatggtt catttcatca gctttcgagc
      181 agcccatttg attcaatttc cctctgcagt gttttactga aaatgacaaa aatgttcttt
      241 tacataaagc ctgcgagtct gtgaacgaac ataaatgtgc tgtgctgttt acatactaac
      301 ttaattgtaa tttaaatgcc cttttcattc cataaatata gccataggct tttcatttcc
      361 ttcaagcctt cagctcagag agcagtttat atgtaaactg gagtcagttg cttcataaag
      421 tgaatttctg gaggaaataa tatagtatat atcaaaatct agataggtaa tgcgaaattg
      481 attgtgacaa tacaatatta gaaacacatc tccataatat tttatttatt acactttcca
      541 ccttttgctg tcaagggaaa atatttcatc ttgcaccgcg aactccagtc tgtagagatt
      601 ttgacctcaa tattctcaca caaatgaata tagtgtgtaa ggtagcacaa ttttccctgt
//
LOCUS       KCOD01000422             470 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 47217pyr ultra-conserved element locus
            uce-6073, sequence.
ACCESSION   KCOD01000422
VERSION     KCOD01000422.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 470)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 470)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..470
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47217pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>470
                     /note="ultra-conserved element locus uce-6073"
BASE COUNT          146 a           85 c           74 g          165 t
ORIGIN      
        1 atcctgtctc ctctgttgat aacatgtgtg tgcttatgcc atccacccca actaaagctg
       61 ctctgcaatt cctgtttatt tgacttgctt tataaagtaa cgtgtcaatt tgaaaatcat
      121 taggtattcc taccaggagt caaagaccac attcagagtg gattacacgc atgtttctta
      181 aaagtgttaa tgtgctaatc tgctggttac ttgatccagg caaaatgcca tgatattcca
      241 catgagcaaa ataccacggt tcttggagat ttcatataaa tattacccac tgtgtttcca
      301 catttgaagt gttatacttg tctattaaaa tcaacaagct ggaactagta tctggaaata
      361 agtgatatta ctattttatt tatgaacttc agattctttt taataaaata ccttacaaat
      421 aaggaacaga acatgaatct tgttgttatt tcatgtattc tgtgtaaata
//
LOCUS       KCOD01000423             667 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 47326pyr ultra-conserved element locus
            uce-557, sequence.
ACCESSION   KCOD01000423
VERSION     KCOD01000423.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 667)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 667)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47326pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>667
                     /note="ultra-conserved element locus uce-557"
BASE COUNT          223 a          102 c          114 g          228 t
ORIGIN      
        1 taagttttgc cattaatttc aacatttaga gaaaaataaa atttttttct tttaaatgca
       61 gtttcatgaa taataagaag agtttgatag agttttgttt aatttaataa aaacctctgc
      121 agaaagtaac agcactagac atactgtttt aattggcatg attacatttt aattggcatg
      181 aaaaaaatta aagacaagga ttttaacttc taacaatggc aaaatagagg gatatggttt
      241 ttaatattac tttcatctaa ggtgaacact gtggaatgga aatacattag aatgaaatgt
      301 cagtggtgcg tacagtttaa tctgtgaaat tttgtcccct gtgctgaata ttactctgtc
      361 tcaattgcat attaaacaac cctatcaagg caggcattgg catctgctgt gctgacacaa
      421 attgtgaatt aaatgaaatt gatgtcctct gtcgtatatt tatgaagacg gaccattctc
      481 tgaagtattc tgtttatgaa gaatttatga ttgcaaactg ttccagaaca aaaaagtggc
      541 aataaattct tttttgtgac cctaccctcc aagggcattg atttcacctc ctgctgctac
      601 ttttgttaca gcataaaaac aatagctagt gctggattcc actgagggtc ttcaaattat
      661 caatatt
//
LOCUS       KCOD01000424             571 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 47434pyr ultra-conserved element locus
            uce-2459, sequence.
ACCESSION   KCOD01000424
VERSION     KCOD01000424.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 571)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 571)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47434pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>571
                     /note="ultra-conserved element locus uce-2459"
BASE COUNT          162 a          108 c          109 g          192 t
ORIGIN      
        1 tatttgactt actggctaag gttttttaaa atgtgtacct ctagtacaga gtgctgtgaa
       61 gctgagagga gagcctgacc tactcttatg aaagaaaaca aaattgagaa agggtggaac
      121 ataggaacag agagatccaa ggtttcccac agtatagtaa tggatatgac ctttaatatt
      181 gaggcctttg gatcaaattt cagttggcat taaaattttc taataaattc cctgctgaat
      241 ctctcagtaa ggtcatgata aagcaagtgc tgtctgtgct attgtaattg ctctcagcag
      301 gctgataatg ttatagcaga gaagtaccag ctactgtgct tttatttctt tcttcaagca
      361 ctctccttcc tacatgcttg ctcctcctgc tctcaggtct accctaagta ggaagtgaag
      421 ctgttttaaa tgccatttcc ttctaatttt gacacatttt tatagtaatg ctttcctgag
      481 tctcttcaat gaagggaata aaactgcaga ataattggag gcttgtattt cctttccgta
      541 attttcacct gatactttaa attcagcctc t
//
LOCUS       KCOD01000425             740 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 47544pyr ultra-conserved element locus
            uce-5369, sequence.
ACCESSION   KCOD01000425
VERSION     KCOD01000425.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 740)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 740)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..740
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47544pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>740
                     /note="ultra-conserved element locus uce-5369"
BASE COUNT          221 a          148 c          134 g          237 t
ORIGIN      
        1 aagatcaaaa cattacgcaa gttaaatttc cttgaaaggt tcccagcagg agttttcctt
       61 tttgtttgtg cagtacgcga tttcctctca cccacaaaaa acataccaag aatgtgcatg
      121 tgccactaac actaagcagc acttccttaa tcactcattt ccaacaattt atggatgatc
      181 agtggcaaaa acgagcaaaa ataatgaaag catgcaatga aagctcattg agacaaaccg
      241 gcttggactt cctactcatt tctgtgtctc tttaagatgg gggtctgata caaattagcc
      301 actgggaaaa aagtcatctg gtcataaaat acagtacagg gtcactttta tgtaagtttg
      361 ccaaaaggga cataaaccag gacaatttca aactgtgaca caggatagaa gtatattaaa
      421 aaaatctttg ttcctcctcc attgtgctgt catgttgctc agctttatag acattctgag
      481 caccagctct ggcctcttcg cttccacctg gtctacctaa ttaattaagc aaggaagtta
      541 cctcaaattt ttgtactatt tgtttttatt atcatgcact tcttttgatg ttccaggagt
      601 taacctctta atccacagac tctgtgtgtt gtgttctgaa cattttggga tgtctggata
      661 atttggataa ttggtcagga tgttgctgtc gctcatgtta aactttatgc tatgacttcg
      721 atcagtatta aggtaatata
//
LOCUS       KCOD01000426             753 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 47657pyr ultra-conserved element locus
            uce-2089, sequence.
ACCESSION   KCOD01000426
VERSION     KCOD01000426.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 753)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 753)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47657pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>753
                     /note="ultra-conserved element locus uce-2089"
BASE COUNT          226 a          143 c          128 g          256 t
ORIGIN      
        1 atgaaattat cctacacatt atcctaccca cacataaatg aatacctctc aggaacttgg
       61 tgttggtgct tggcactgtc tcaccaaagt tcatagctag cactagctaa tgctatatta
      121 gtgataatta ataagaatta gtcttgtata acataaagca gctttatgct gtcagtatca
      181 tgcatcttta tcaggaatac atcatacaga caatggaaat tttccatatc ctttaaagtt
      241 ttgcattctg tatatttggt tgttagacaa atagagcaag ctttgctgac ttcattttca
      301 ttcttggcag catgttttta tcataaggca gatagtcatt aatttacaga atcaacgctg
      361 ggaacagctt ttgtgatctc atattaaatt ttcgcctgaa tccgcccctt ggcaaaaatt
      421 actcacatcg ttaaaaaata tttaattagg ctgtagttta tacccagctc actggggaaa
      481 tgttggaatt aatatgattt gcatgaattc tgtttctctt tttctgttag agattagttt
      541 tgaattcagt tcagagggtc gctgacactg ccaaggactc acaattgtga aggtcaaaca
      601 ggtagcaaat acttcccctg ggtagcttcc ctgaaaagac agctcaaaat tgcttttaat
      661 tatgggttac ctaaaaggcc acttgctttt tatttttcca caatctctca aatattatat
      721 ggctggaact tctaggtaga ccacatcagt tca
//
LOCUS       KCOD01000427             625 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 47767pyr ultra-conserved element locus
            uce-394, sequence.
ACCESSION   KCOD01000427
VERSION     KCOD01000427.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 625)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47767pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>625
                     /note="ultra-conserved element locus uce-394"
BASE COUNT          181 a          125 c          151 g          168 t
ORIGIN      
        1 gattccatgc aggtggggcc tgaaacacag gtgacccctg cgagcagagc ttccaatctg
       61 tgggagaacc ttctgggcca ggagatgctg ccctctctcc ctggcaaaga agctgagaaa
      121 tgaaatgagg cacgaaggct gcacgagagt cttttatcag gtacatcttc gtttttcaag
      181 tgcccatcat atcacgaaaa ctgctcttga agagccctcc atttaccctc tcccctaatt
      241 aaatgtgcac ttcattaatg taaattgggg gtttaatgct cttgttgaaa ttctgaagaa
      301 agtgctatgg ccttgcgaaa tgcttaagca tcattgcaaa ttagattagg gaccaagaaa
      361 ggcagtaaaa ttagaatgat aatggttgat gtggcttcct gacaggcgtg actattcagg
      421 gatcaatggg atggagaaca gtttccccca gcctaaagcg aaaggcaggg acagacgtca
      481 gcctacagat gtggcttttg gaagctcttt caattagttt aatttggtaa atggtgggga
      541 tttagaggct cttagccagt catacaagac aagaatacat tgaaatgttt ttaacataaa
      601 ataggattgg ccacatttgc atttc
//
LOCUS       KCOD01000428             655 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 47876pyr ultra-conserved element locus
            uce-4128, sequence.
ACCESSION   KCOD01000428
VERSION     KCOD01000428.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 655)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 655)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..655
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47876pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>655
                     /note="ultra-conserved element locus uce-4128"
BASE COUNT          208 a          131 c          127 g          189 t
ORIGIN      
        1 tgcttgaaac tgaagagaga tttatcccac aaaagtatgc cgcacattat tacccaaact
       61 ggaacaaagg caggacctca gtattcaagt gttatgggaa ctttagcagt gaagggtcag
      121 ggatttgatc tgatgtccaa gtgaaatgcc agttacagtt tgcacagtgc catcagacaa
      181 tccagttttg ctgagaaact attaatttaa tgttacggaa gcaaaatatt aagctatgaa
      241 gtttcattat acttggagcc tttgacactg gtttatcctg gagttcaagc cctgataatc
      301 tatgtgcttg aagcttcttg gtggataatg gaaaattctg ctccatttcc tctgggactt
      361 catgctcatt agtcacagca taccaattaa aagctttgtt agaaaaccag aggaatgtga
      421 cacagcacat gtacaaacca ggaagcttca ttcacatata acatggatga atggctctgt
      481 atggaaagcc aagcatcgca ttagcaggtc gtgtgcatca gcttgcaaga tcaacttttt
      541 aagtcagcac tctcagtaag cagcgaattt tcattttttt cacagcccac accttccttc
      601 taaaaaatat tttaaatagt tcagcaatta tctagcagga aatcactgaa catca
//
LOCUS       KCOD01000429             518 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 47985pyr ultra-conserved element locus
            uce-697, sequence.
ACCESSION   KCOD01000429
VERSION     KCOD01000429.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 518)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 518)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..518
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47985pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>518
                     /note="ultra-conserved element locus uce-697"
BASE COUNT          156 a          101 c          123 g          138 t
ORIGIN      
        1 gctccgccgt aaacccccaa aattatataa cacacatgtt tttatgcttt gccaattaca
       61 gctggaatag ggactgtttg tttcagcccc tctcaaaatg aggcgaggat gggaaaacaa
      121 cctattttcc ttattaggtt caggagtcaa aggactcagc caggagccgc aggcttcaag
      181 agcatagaag attaagacat atattggatt catgatggag ggcacaaagt tcattttcaa
      241 aataaaacag aattttattc atattccttt taaaattcag attgccattt gccagctgac
      301 ctgtgacatg gcagcagtgt attacatttt caatgagcag cctgtctgga gctggcagga
      361 gaggcctggt ggagcaccgc ccttaaatag taagaatttg tcgggattgt tgtcagtaat
      421 gggagacggt gcaaacaggg acagggcagc atatttattt ttaataaggc gacatgcaga
      481 atagcaaagt ccctggcatt atgcaccgaa tagggctg
//
LOCUS       KCOD01000430             647 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 48090pyr ultra-conserved element locus
            uce-7817, sequence.
ACCESSION   KCOD01000430
VERSION     KCOD01000430.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 647)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 647)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..647
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48090pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>647
                     /note="ultra-conserved element locus uce-7817"
BASE COUNT          228 a          116 c          108 g          195 t
ORIGIN      
        1 atgtcataaa ctaaattgta atcttctgct gtaatgcttg agaaattgat atgatgtggg
       61 atcatatcct ggctgagatt gcccattttc aaaagtttta aaatcttctc tgaatttctg
      121 taaaacacaa tgagagatca aagtcagtgt gttagctcag aaataaaaac ggatattcgt
      181 actggataac acatttttca tttatgatat tagctttgaa gcccagcact gcaaacacca
      241 ccaaagttgc cagcacagaa gtgaaaaaat tgatgaagga caccagtaca gcatcaaaat
      301 ggcagttgtt gtctctcttg ttgtagcttg aaaaggcaat gactccacca aatccaagcc
      361 ctaaggcaaa gaacacctga gtagcagctt ctctccagac cttgggctcc agcattattt
      421 caagctgttt gaaattagat ataatatatg tcagctataa attgcatttc tattataaaa
      481 atgctaatag tattttcatt atgataaaat gaaagctgaa tgcgacaccg caaacttata
      541 ggccagaatt tctatttatt ttatattatc taaacatcaa agatatacag tatgttccca
      601 acaacaagat actactggaa ctatgtaact gaaataagtt atgctga
//
LOCUS       KCOD01000431             317 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 48193pyr ultra-conserved element locus
            uce-2902, sequence.
ACCESSION   KCOD01000431
VERSION     KCOD01000431.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 317)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 317)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..317
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48193pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>317
                     /note="ultra-conserved element locus uce-2902"
BASE COUNT          109 a           67 c           55 g           86 t
ORIGIN      
        1 gtgtaaaaat taaaaaaggc tgagactatt gtttgaaaac aggcaaaata attaaaatta
       61 ttatggaata atcacatatc acacaacaac ctcccactct tctgagcaac aatccaaaac
      121 agctcctcca aagcaggccc aggggcagag gttctgtata tcattcaaag accatctgtc
      181 attcaattcc tgtagcccct ttccactatt ctaagggcag gctgaaattt agtcctggca
      241 tttctttttc catttgctaa caaacagcag tgatggcaga taaatatggc aaacaatagg
      301 tgtttgtaat gaactgg
//
LOCUS       KCOD01000432             622 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 48302pyr ultra-conserved element locus
            uce-7452, sequence.
ACCESSION   KCOD01000432
VERSION     KCOD01000432.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 622)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 622)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48302pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>622
                     /note="ultra-conserved element locus uce-7452"
BASE COUNT          188 a          121 c          116 g          197 t
ORIGIN      
        1 ctttttatct atcttaaaca gcagaagtta atttgaggat ttttacagta ttttttccca
       61 tttacaaaca gaaatgccat ggggtaaagc aattactctg atttactgtt ttcactttga
      121 ttgaacataa agatgtagca gggtctcaaa aaagcagtaa cttaacaaac tgtgctccta
      181 tccacagaca gataaagtac ctattttgct atttcaaaga gtttacctcc aggcagcagc
      241 acagagcaaa catcaatcaa tgacatgtgt ctaagatgag attgatgttt actctcacag
      301 cttttcatct tacatccaat aaattatttt tccttcacca aagtgcctgg ttaaatttca
      361 tttttcactt tgcagtatca gttttaaaac tttagcttcc agcaatttta aagctaggat
      421 tcattgacgc ttcagctttt acagcctgtt tatgatttgt attagccatg aaacactacc
      481 gaccaaacat gaatatgatc agggggagct gagctggggc agccgctcgc acggtggcag
      541 gtgcaggctg gaaggtgtga gattctttaa ttatctgcct ggaaattcca agtccaaaac
      601 agggttttca ggggcagata ta
//
LOCUS       KCOD01000433             656 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 48413pyr ultra-conserved element locus
            uce-1828, sequence.
ACCESSION   KCOD01000433
VERSION     KCOD01000433.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 656)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 656)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..656
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48413pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>656
                     /note="ultra-conserved element locus uce-1828"
BASE COUNT          155 a          175 c          129 g          197 t
ORIGIN      
        1 agcagcctgg agactgagga tggtatcgct tcttgcggct tagtcctcct gaattcccac
       61 cctctgcaga cgttctcctt cccccgcctc tcccccagca ccactctgct aatttctcga
      121 gtgggacaca ctaatcccat atttctgtga tagttgcttt ctccaaagct gtcttggaaa
      181 cccaggtgcc agtccccgac cagggaaaag agatggcgaa cgtctttctc ttgattgtgt
      241 cgatgggaga tgattttcaa ggtgaaattt ctagttcagt tgagtcactt tcattcaagg
      301 cgatgagcaa aatgtcaccc ccacactgaa ccacactcaa tgcgctgttc tcctattgca
      361 tttaaattta ctccactttt cctttctgac acctgtttaa atcaatatct tcctctccag
      421 gtcgtgggca gaatgtgcct ggtctctccg cacagcgctt ctcaaatcca ctaaaatcaa
      481 cacaataatt gaaatatttt caagctgatt acaccgctgc ctgaggctag gctggttgct
      541 aagggtaagc tccctggttg ctagggggag taaatcatct tgcattattt gatttttgtt
      601 atagatatga aaccgctact ccctcgatta aatgtctctc agtctaacac ctatgg
//
LOCUS       KCOD01000434             453 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 48523pyr ultra-conserved element locus
            uce-398, sequence.
ACCESSION   KCOD01000434
VERSION     KCOD01000434.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 453)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 453)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..453
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48523pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>453
                     /note="ultra-conserved element locus uce-398"
BASE COUNT          133 a           86 c          105 g          129 t
ORIGIN      
        1 actttcgtta gtttttctgc tgttttgctt taatagtgtg aaaatcccat cttctcaatt
       61 ggaacacctg cctgccccat gaaaagggta tttgaagaga agtttgtacg ccacgctcaa
      121 acacagcccg gcgtgagttt ttagcgtgtc agtcagtgag ttagagggaa agggtaagga
      181 gaagctaatc aggatgaaat gagattaaag gctgtctaat tttacagcaa ctgtgatcca
      241 tcagccactg tgaaagtgac agtggaaatg aatgatggag acagacaggt ggggctgtac
      301 atttcactga tttatcctca aatgcactgg gccttatttt attgagtgaa catgaccgca
      361 tttatcatga ctgtcatcta aacccacttc cctccattta aaaaggtcac tttactagga
      421 gggagtagga tagaggcact ttcaaaacag att
//
LOCUS       KCOD01000435             741 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 48630pyr ultra-conserved element locus
            uce-2682, sequence.
ACCESSION   KCOD01000435
VERSION     KCOD01000435.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 741)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 741)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..741
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48630pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>741
                     /note="ultra-conserved element locus uce-2682"
BASE COUNT          223 a          152 c          140 g          226 t
ORIGIN      
        1 tccatgacag catttgtctc ttagttacag caagggtaat attatcagca ccaagcaacc
       61 cagaagaaaa ttatcaattg gttaccaaga aacctaatga tttcatcaat attattttac
      121 cagttacaaa ggtcatttgg agaagtaatg ccacacgaaa tgtgcttgtg aagtgggtga
      181 tgtgtgggtg gctgttaagg gtcaacactt catttctcat ttctttaatt gatacttctg
      241 aatgagtatt aattgagctg caatgagaag agtgtgcagt ttgacaatgc aagtgacagg
      301 atggaagtgc catttgcaga gtgtatataa ccacagctaa caccctcaaa gcgttaattc
      361 cattttatgt ctttcacatt taatagcaaa tttgccattt aatctttaag acagaagtta
      421 cttattctca atctacctct cacttgcact gatataatct cacgccactc agactggcct
      481 gtggcatgaa gcacatcaca ctttcaaatc aggtccattt tttcattagc tcatatcctt
      541 cctgagatgc cctcctttac agatggctga tcagcaatca acactagttt gtttcaatca
      601 gaaaagcagc cgtaacttct catttaaaga ctgttcctgg agaagcgcat tagtcgaagg
      661 cataaagctg gcactggggc aacagtgact ctcacaactg atttctttgt tttaaagaga
      721 tagacctcat gtggagacct g
//
LOCUS       KCOD01000436             443 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 48740pyr ultra-conserved element locus
            uce-5899, sequence.
ACCESSION   KCOD01000436
VERSION     KCOD01000436.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 443)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 443)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..443
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48740pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>443
                     /note="ultra-conserved element locus uce-5899"
BASE COUNT          133 a           77 c           91 g          142 t
ORIGIN      
        1 ttttttgaga agctcttgta agatttgtat ccccactgag gaccaagatg tcatagggat
       61 agagaaaatg ccgctcactt tatggattac tgttaggtca acaaaacttt ggcagcattg
      121 attaacttga cagtgagtac agcagtacat ttatcactta tggctgtgct gtagaaaatc
      181 taataagagg caaacaattc cctttagagc agtaacaggt tcactgtggc taacggtgca
      241 tgcactggaa atttctgact ttaaattata cccttgctgc tagttgggtc attgactcca
      301 agctactgca ctttcactac tatgttctgt attattaatt tgatcagaat tgttttggct
      361 tctgtaaaag tgttcaagcc atatattgaa gttcatataa actcataagc atttttgaag
      421 aagggaagga ggagcatgat cca
//
LOCUS       KCOD01000437             420 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 48846pyr ultra-conserved element locus
            uce-2537, sequence.
ACCESSION   KCOD01000437
VERSION     KCOD01000437.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 420)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 420)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..420
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48846pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>420
                     /note="ultra-conserved element locus uce-2537"
BASE COUNT          146 a           93 c           77 g          104 t
ORIGIN      
        1 aaaagaaaac agaatcacag ctggaccctg tcctacacga ggtgttagaa aacaggagcc
       61 atgacaacac attcatttcc actaggggtg tgtgaagcag atactgcccc ttctgtagct
      121 ctcaataaac ctagtcactg acaaacactt gtggaaaaac atatgcacca gtctcctgca
      181 taataccagc tgcaactata acaacaaggt tataaaccta aaataagatg ataacatgta
      241 aatactgggt tatttagtct acagtacagt aatctggata aaaatgacaa gggatagcct
      301 aatttccttt ccccaaacaa cttttacttc cctaggttgg atcgaccttc aatgcaaatc
      361 ttaacctcct gaggaataaa agaaggcttg ggaagagtca aaggtggctc ctcttctgat
//
LOCUS       KCOD01000438             305 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 48951pyr ultra-conserved element locus
            uce-153, sequence.
ACCESSION   KCOD01000438
VERSION     KCOD01000438.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 305)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 305)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48951pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>305
                     /note="ultra-conserved element locus uce-153"
BASE COUNT           91 a           43 c           60 g          111 t
ORIGIN      
        1 tatttcttag ctgtttgcta acagcagaat agcaatcagt caccacaggg ttactacaat
       61 gggcatcatt atatctggat ccttatcaat ttcactatat gggtaagtat tattgctgca
      121 taccggaact cctttggtgt tattgcttaa ttttaattgt gattgtaaaa tgtgaaaaat
      181 gtggatattt aaaccacaat taaacacctg ctatacttgt tgtgcattgg catttaaaga
      241 tatattgagt atttaaaatc tgctgaatca gatattatat tgagggggga tctgggattg
      301 gtttg
//
LOCUS       KCOD01000439             540 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 49060pyr ultra-conserved element locus
            uce-3966, sequence.
ACCESSION   KCOD01000439
VERSION     KCOD01000439.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 540)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 540)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..540
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49060pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>540
                     /note="ultra-conserved element locus uce-3966"
BASE COUNT          168 a          117 c           93 g          162 t
ORIGIN      
        1 acatgtatgt ttaagaatga ttatacagat atagaaaatt atgtacttta ttgcccttct
       61 aaatgccctc ccagaagctt ttctcaacac tgtcaaacat taaagacttt tgtttgaacg
      121 tgtggagttt gctttgtatt tccttggaaa ggaatacatc tttcactacc acaaccttct
      181 gtaaccctcc tgccctcttc actcccacac ccccacacaa agacactcct taattgtatt
      241 actgttaggc tgacctccaa cccctactaa aatgaggaca aggctagttt tgtgtttcat
      301 gggataacaa tttatgagca attaaaaatg aagagacaca aagcattcat cacagtctca
      361 gctagacagg cagctgaggt caaaggttct agcaatgaag tgcgcacaat atatttttat
      421 ttctgttttc actaagaagg aaacgggtta gctaaaaatt atggcattca gcctccagtt
      481 caaaataggt gcacttaatc tttcaagaca gtccatgctt gggcagatag gttatgacag
//
LOCUS       KCOD01000440             686 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 49169pyr ultra-conserved element locus
            uce-910, sequence.
ACCESSION   KCOD01000440
VERSION     KCOD01000440.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 686)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49169pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>686
                     /note="ultra-conserved element locus uce-910"
BASE COUNT          139 a          151 c          143 g          253 t
ORIGIN      
        1 ttttcctcag cttcatgccg ttctaaaatg gctgtgtatg aatgtaattg gtgctacctg
       61 gaaatctaaa tcatttgata agctaatggc tctctgagca tcctcaaatg aacgggaact
      121 ttccctttgc ttgagggagc cccagattgc agtgattatt ctgaactgtg tgacctcctc
      181 tgcatgctca ctgtgctgct tttcattttt aacaaactaa catgttttct ctgcttctcc
      241 ttcccgttcc ttatttaccc atgtgttttt attaacggat tctcttgccc ctgtctgttg
      301 gtttttagct cttcatggtt cgcactatga cagagtcctt aaactctgct gagctgttga
      361 agcagctcaa gtctctggga ctggaaaagc tattgcatgt gacacacaag tttctgaggc
      421 agtcctacat ctatccgcct cttttaaact ttggtggtaa gacattactt ttactttttg
      481 tggtgatgtg aactgttgca aatggtctgc tgctgagtgt cagttcccct tggcatgggt
      541 aggcatttgt gctggtgtgt aggttgcatc gttcctcttg ccttttatcc acacagtgcc
      601 agttttcagt ttgaagtgga gcagtcgctt actgatagta attctcagtg ttgctcaact
      661 aatgtaccat gtgtattttc cttttt
//
LOCUS       KCOD01000441             650 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 49280pyr ultra-conserved element locus
            uce-472, sequence.
ACCESSION   KCOD01000441
VERSION     KCOD01000441.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 650)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 650)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49280pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>650
                     /note="ultra-conserved element locus uce-472"
BASE COUNT          198 a          117 c          125 g          210 t
ORIGIN      
        1 atacttagat tctgattaaa agagagaatt gagcactaca ttgttatatt tcaaaaagca
       61 tggaaaagtg ctggcacatt tttccctatt atgtgccttc tcacttcccc aacctttctg
      121 atgtctttcc agtttggagc tcctgcttag ataaaacaga tgactttctg ggcctgcttc
      181 tgctaacagc aggcaggagc aacggtgact gattggttga aacatgagga ttaatgggta
      241 tttatatttc attaaatttt atgctcactg gagaataatg tatcactcgc agatattgaa
      301 acatatgtca accctatcca cttacatata attcaatttg acttaaatgc attgatcaaa
      361 ttttattaaa gtccaatata tcttccaaaa aggcctgcta acacaatatt gctgcttcac
      421 attcatcaga taaaaggagg caattgtgtt gtaattccat ttataccatt tttcgggaaa
      481 aggaagatta ttgtgaagcg aatactcatt acaaggtgac tggtgttggc tgaaggactt
      541 gagactgaga ttattaagtg aattctcaag tggtgccctt tagttaaaat taccccaggg
      601 tgggtcatgc ctgttttcat ccccagtgga aaagagagat cagcattgtt
//
LOCUS       KCOD01000442             714 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 49393pyr ultra-conserved element locus
            uce-6944, sequence.
ACCESSION   KCOD01000442
VERSION     KCOD01000442.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 714)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 714)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..714
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49393pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>714
                     /note="ultra-conserved element locus uce-6944"
BASE COUNT          193 a          127 c          152 g          242 t
ORIGIN      
        1 aatatgtcag aggagctgtt gcagtaaaat gtaagcacat catcttggag ggggtacagc
       61 gtggtgggcg tattgttggc tcaggaggga gagaaagatg tataatttaa tggtatatac
      121 aatccactga tcctattact atcctccctg gagctcttgt tagtttcaat gggagtgagt
      181 gaaattgaca tggacttgca ttcctggtca tgtgcccccc tttctttctt ctcttgtgat
      241 ctgagatccc ctttttgttg atgttgcttt cccacttaat tatatgcatg taggttaaat
      301 gaatacctga cgaaagggcc cacgtttcaa ggcagtgaca tttgatagct gagaggaaaa
      361 gtggctttaa tgaaaagcaa cctttggaat tcctgcttgt gaaaaatcca attcagcttt
      421 ttgtgctgcc agcaagaaat gatcagtagc accagtgttt atggtatgtc cgttttggga
      481 tctacttcct ttgcatctaa atagcaaaga cagatttaaa tagcatgata acgcaccgag
      541 gactctgcat gcaaatattt tgtaataaat acctaatgtt taatagtata tttttatata
      601 agcatctctt gctatcattt gtttatcgtt tctgcttcaa ttatggcatt agttttgtcc
      661 attgtattga tctcagttgt aaaacctgaa gttgcatgtt accagcagtg cact
//
LOCUS       KCOD01000443             723 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 49506pyr ultra-conserved element locus
            uce-5344, sequence.
ACCESSION   KCOD01000443
VERSION     KCOD01000443.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 723)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 723)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..723
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49506pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>723
                     /note="ultra-conserved element locus uce-5344"
BASE COUNT          260 a          121 c          137 g          205 t
ORIGIN      
        1 tttcaacacc aatcacttat ttatgtagta tggaatatca agacagagag acagggaaat
       61 aatgaagaac cctgcagagg tgactttagg agagagtaga ctgagatgtt aaaaataaac
      121 aaactgagtc actggagagc tccgcttaat acttgaaggg caacatcaca cacctagaat
      181 gtctcatacg gctgagaaaa gaaagactag ttagtggcca agaacaccct gatgttctgc
      241 gctacaaatt gaaagtgaag gttactttat tgtagacttt atcttaaagc agtaaaacgg
      301 gtagctgcag ctacaactga aagtattgat tttgtaattt cagcaaatta agaacaagac
      361 aggaaaccta ttaaaccttt ccactgattg ccagggcact ttttggtgat gctggtgctg
      421 acattaaaat tacatgcgcc tgtctcttta aagccaaaca tatacatttt acagaagata
      481 gtgccagcta acatgctgaa aagggatctt tataaatctg tgtaatttca catttcagat
      541 gtgaaacttt tgaagcctga tgacatgaat gtcaagcagc acatctaaaa ttttcataaa
      601 ttatggctca tgttagatgt gctttcatta cattttaata aattaaaatt ttcacaaagc
      661 cagaagaata ataatagcaa agattgtaac gctagtaata gcattatctg tcagaacatt
      721 atg
//
LOCUS       KCOD01000444             463 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 49615pyr ultra-conserved element locus
            uce-2719, sequence.
ACCESSION   KCOD01000444
VERSION     KCOD01000444.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 463)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 463)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..463
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49615pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>463
                     /note="ultra-conserved element locus uce-2719"
BASE COUNT          168 a           77 c           79 g          139 t
ORIGIN      
        1 ttggccacct ttataaatac acttaataat agatcagatg gtttgtctag ctagctcatt
       61 gtctggaatg gttagggggt agagactgac acagcctttt acttgatgaa caaaccagtg
      121 ctgtatttta aacaaggctt ttacactgaa ctaccccagc acggtaattt aatgaatcta
      181 catttcatga ctgaagtgat aaggatgaaa cattttaaaa taaccaaaag gtagatacac
      241 caaaaaagtc tgatgaaaca ttaaatgaat gtagtgtaac acattatctt tgcttctgca
      301 catccaaaaa gtgcaatgaa ctaaaacatt gcattaagcc aagaataaag ctaaaaatta
      361 aattggctta gaaagatcta gtgtagtggt ttatgcacta agaacgctgt aaatttggtc
      421 atttaatatc attctcttta cctctgatat gcacattaaa agc
//
LOCUS       KCOD01000445             774 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 49726pyr ultra-conserved element locus
            uce-1010, sequence.
ACCESSION   KCOD01000445
VERSION     KCOD01000445.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 774)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 774)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..774
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49726pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>774
                     /note="ultra-conserved element locus uce-1010"
BASE COUNT          242 a          138 c          154 g          240 t
ORIGIN      
        1 tttggtaaga accaagagca gcatcagatt aaagacctta aaggaaagta gctggaggca
       61 atcaatagct atctctgaaa acaagctagg cattgggttt tgatctgcct gtctcctcgt
      121 atataaatgt aatctcggat cttgattgaa tattcccact ctgattttgt aattaaaaca
      181 tcatttatac tgagaataat taagacaact gtacatttga ttttaaaatc agttttgagt
      241 attgtgcctt gtcaagctac aagaatggct cctgcagctt tacaacttag cattaagagg
      301 cagacagtga ccgcaggcac ctgagtggaa ggtttgacag tttgataaat taggaatgac
      361 acttgccaaa atggctgtcc ttccctcagc ctgccagtgg agcatttaca cactgttaat
      421 tgaattggca atttgtgtaa cagtacctgc ccctgagctt ttgtaatgct ggagctgcca
      481 tttagctctg ataatccagg acttgggaat aaggacgaaa agcttcacat gatattattg
      541 cagatttaaa atgacagttg gggaccttgt tgccaatttc ccattaaatg agaaataatt
      601 aacaatagca ataacaaagt cttataaagc tggaaagtta aattgacttt tcagcagtag
      661 tatggtttga aattgcttct agtgtgatta tcagattgcc ctttcagtat tatataccct
      721 aaatagtatc atctcatggt ctgaataagc agtagtgtca aagctaccct gttt
//
LOCUS       KCOD01000446             203 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 49825pyr ultra-conserved element locus
            uce-299, sequence.
ACCESSION   KCOD01000446
VERSION     KCOD01000446.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 203)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 203)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..203
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49825pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>203
                     /note="ultra-conserved element locus uce-299"
BASE COUNT           53 a           33 c           35 g           82 t
ORIGIN      
        1 tgcaggctga ttttgtgtgg agagtttaat taaacattgc agctgtttat ctctatggtg
       61 attaaatttt catatgtaaa ttacatgtat taagatcaag atacttatgt aaatgtcact
      121 tgccttaatg ttttgtgtta ctgttattaa catctcacca tcagcttgta atcttcttgt
      181 attgcattac gccgccgtgc act
//
LOCUS       KCOD01000447             270 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 49927pyr ultra-conserved element locus
            uce-7035, sequence.
ACCESSION   KCOD01000447
VERSION     KCOD01000447.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 270)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 270)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..270
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49927pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>270
                     /note="ultra-conserved element locus uce-7035"
BASE COUNT           90 a           53 c           46 g           81 t
ORIGIN      
        1 taagatcaat gttttttgtg accaaattag aagggaccta gagcaaactt ctgagcagtt
       61 attaacacag gtccacattt actgaaagaa ctgggcacct tcacgtgcac tgcaatagct
      121 gggagttaca caatatctat atcatttttc acagctttgt cattagctgg taatgatttg
      181 attattttgc agatgaatca cagtataaat ctctttcaca aacactacct ccaagtatta
      241 atcaaaacca ttaaggcaaa gcagtcagtg
//
LOCUS       KCOD01000448             728 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 50032pyr ultra-conserved element locus
            uce-4981, sequence.
ACCESSION   KCOD01000448
VERSION     KCOD01000448.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 728)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 728)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..728
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50032pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>728
                     /note="ultra-conserved element locus uce-4981"
BASE COUNT          241 a          127 c          168 g          192 t
ORIGIN      
        1 aataatattt caggttttaa tagtaattag catattaaat atcagtgtac aaggggactg
       61 tacaaagcga ttccatagta aattagtctg aaaattgtcc taattgttat gccagatgat
      121 gtcctctaca ttttgtcttg ggagaaaaag atctttctgt ctaaatgcca ttatgtgtca
      181 tcctagctga gcctcctgcc tagcggggac attgaagttg tacagcagga gccgcttctc
      241 aggctttaag aactacagta aatcttcaaa caatttatcc aaacaaaggc cagtgtgtgg
      301 agagaaaaat acacgggaag cagatgaata agcaacatca attatggggg ggttgacctt
      361 tctgccccac accatggcac agatttcaca ccaaatcgca gcagattgaa gttgacatgc
      421 ctggagtgaa aacactggtc ctcacaatgt tgcaactcta cattcacaga gctgtagtaa
      481 ggagaggagg aagaaaatga agagaagggg agggggaaaa atcacatata atgggcctgg
      541 gtttatttta cagagaacaa aatggctcaa tttgagcact tagactgtca aaattggcta
      601 gtgcgagata cgagaggttc atccaaactt gaatcaggtg ccttcagtga cagaacctag
      661 aagaagagat tgggagaata aaggctgttc ttaaaacctt gttaatgttg ttagggacca
      721 tattattt
//
LOCUS       KCOD01000449             691 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 50243pyr ultra-conserved element locus
            uce-7666, sequence.
ACCESSION   KCOD01000449
VERSION     KCOD01000449.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 691)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 691)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..691
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50243pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>691
                     /note="ultra-conserved element locus uce-7666"
BASE COUNT          221 a          116 c          128 g          226 t
ORIGIN      
        1 ttcttttcac cctttgtgcc ctttccaaat tcttcctctt cttgctttta gaataatgaa
       61 agtactgaaa agactatgct tgtaattaaa agtcattttt aaataacctc agaagattgt
      121 ttctagaaat caaaacatct ttatggtccc atttctaagg aaagaaagac aagtgactgg
      181 gatcctgtac actttactgt agtctacatt aattaccttc tattaaaaaa tgacaaagac
      241 ctttttgaaa gggaatctgg cactctttcc acagaaatga tggcagacac cctactctgc
      301 tgatttcttg acacttctaa ttacctgtat tcatttgaaa tcgtttcctt tgtagtgagt
      361 tattggcatg attttcagag aacaagagga aaatggaaaa cattttagca agttaagaaa
      421 aaaaaatcaa cagtatcatt gtttgcagct tttgttgaaa ctagctacgt gagtcatttg
      481 agggacatga aggtaaatga aaggttatac tttgccctgc acgttgtcgc tggtatttgt
      541 aatgtcaata actgtagaag gttgtcagga aactggagag ataaaggtca atagcaatga
      601 caaatatatc attgtatgtg tttgaatatg caatatcagc ctaatctcgt ggtggaggtt
      661 ttcacaccct ggaaatatca atcaggtgct g
//
LOCUS       KCOD01000450             636 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 50355pyr ultra-conserved element locus
            uce-6725, sequence.
ACCESSION   KCOD01000450
VERSION     KCOD01000450.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 636)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 636)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..636
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50355pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>636
                     /note="ultra-conserved element locus uce-6725"
BASE COUNT          222 a          124 c          109 g          181 t
ORIGIN      
        1 tatgtaacta gacatctcaa tttaacaacc agacatacat ttaacagcat taatagctag
       61 gcacttaatg gatcaattcc cactgtttgt gtaatgtgga aataaaaggc ttattaaatg
      121 acaagctttc cctggtttgt gctaattaat tatacactgc atctgactgc taatttagtg
      181 ggaaaatgca gcccaaaact atggtttctg cttgaacttt gcctcagcac cacctaattc
      241 tgcgcagagt gcagctgcga cctgcctctg aacgacagca gtattaaatt agtgcacaag
      301 gccatcaatt taataagtac tgtagcaggt aatttgaata aggacagtat tagtattcta
      361 ccagtgcaca actaaaagca gctgaccttt cagaccggag aagaacacat ctagctgaat
      421 cggtgaacac agtaataatc tgaccatgtt aagagtgcca agagagactt ttacagctct
      481 gcatccatta ctatatatca gctactctac agtatataag aacactttat gtacagcaaa
      541 acaaggttat aaatagaaca aaggcaatgc aaaacatata tttcaagtgg cacatttaaa
      601 aattttcctt attaccttga tttatggtat aaagaa
//
LOCUS       KCOD01000451             648 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 50464pyr ultra-conserved element locus
            uce-6888, sequence.
ACCESSION   KCOD01000451
VERSION     KCOD01000451.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 648)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50464pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>648
                     /note="ultra-conserved element locus uce-6888"
BASE COUNT          205 a          120 c          117 g          206 t
ORIGIN      
        1 ggagttccta ccaatcctct tgggctaacc taaataattt tatgtctgtg tcataatagc
       61 cataaaataa ttctgtgtca aaacaatttt gtaaattggt gtttcaacat ttgtcctgag
      121 tgcagctgaa caaaaccctt tgtgtatagc tccagtcttt gcgcctcaag gactccccta
      181 ttatacacct gttcttgaca gattgaggcc taaaacagga gagcttagtc acatattaac
      241 cagcaggaag aaagtctctc cttttcatta atgcctgcct acgagttcag tgtttggaat
      301 tcagtcctac ctataaatca acatcagaga ctacaaccca gtgtgttcaa gagctttgtt
      361 taaacatcaa aagaagaaca cagacaagca ctatggtaga aatataacta atcgcttgca
      421 aattcatctt tcctgtcagt aggagcttaa cctttttgtt taatgttact gcaggaaaat
      481 gcacttattt acattttctt taaagcaata gacaggttta aaaatgatca tatttattac
      541 tgcaggattt tagaagtgtt cagttgcagg aagatttatg gaatcttggg aatttcaagg
      601 cttcacaatg attaataaga acaggagtta ctgagattgt tgagcatg
//
LOCUS       KCOD01000452             598 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 50573pyr ultra-conserved element locus
            uce-4695, sequence.
ACCESSION   KCOD01000452
VERSION     KCOD01000452.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 598)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 598)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..598
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50573pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>598
                     /note="ultra-conserved element locus uce-4695"
BASE COUNT          190 a          121 c          121 g          166 t
ORIGIN      
        1 ttttgtgtta ttagcatcca agagtgctgg gggtgagaaa aaggtgcaag agcagcaggg
       61 gactgttgcc ataaacagga tttcacagag tcatgcatct ttcagagaca tctccataca
      121 ttacttctaa agttagcatt atttctccat ttgaaataat cagaaataaa acatcagaca
      181 gtaaacactc ccccaatgac taactgtgtt ttttgggcca ctcctcaacc ctccactact
      241 ttgcaaaaga cactaaaagt tccttctgtg agttgccaag gtgctcccat cccattgtgc
      301 agaatcattg tcagattaaa ttagggagta cagactccat gagtgtaaaa aaatcaatac
      361 gtgatggaag attgctccct ggaaaatctg ttttgattcc aggattaatt cgcgaccaaa
      421 ggcttctgca aaatgacatg ccattagtca gaaaatgaac acattctacc cttgaaattg
      481 gatggaaata tgtcaggtga ttgacctatt cattctcttt cctctctggg cagagagagt
      541 aggtgtggta gctgtgaatt agggaaccag gtccattttc caagcagtaa aaaaaaaa
//
LOCUS       KCOD01000453             497 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 50681pyr ultra-conserved element locus
            uce-5429, sequence.
ACCESSION   KCOD01000453
VERSION     KCOD01000453.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 497)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 497)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..497
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50681pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>497
                     /note="ultra-conserved element locus uce-5429"
BASE COUNT          138 a          113 c           74 g          172 t
ORIGIN      
        1 ttttctaaat aaagcacact gtctccattc agcccatgga gaaagggtgc ctactcaatc
       61 ctcttaccgt tgacaatata ataaaaccag aggaactttt ttgaagtaga tctgcacatt
      121 ccacatttgg attgaggggc aatggactgt ttaaattgct atttacattt ccagctgttt
      181 taccagtgat ttgcccaact taatagctct ttaagctttt aaacaagaaa atagctattc
      241 tcacgactca aagaagaaac catggttatt tcagtctgcc tctattgtaa aaggcttaga
      301 cccctctctc tttatagatg cccttccctt tatagtactt cccttttcca tctcctcctt
      361 ctttctaaat cttcttccat ttttagctca ctttttacat tttttagcac cataatgtat
      421 ctttgctgat actgctgatt caaggaaagt gtttgcaagt agtcaccaag gttcccaaga
      481 gagacttaag ttagcca
//
LOCUS       KCOD01000454             554 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 50790pyr ultra-conserved element locus
            uce-1977, sequence.
ACCESSION   KCOD01000454
VERSION     KCOD01000454.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 554)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 554)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..554
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50790pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>554
                     /note="ultra-conserved element locus uce-1977"
BASE COUNT          187 a          101 c           89 g          177 t
ORIGIN      
        1 cattttaaca caattttaag tgccacaaag ggctttatat ctttgaaaag cacttattaa
       61 aaattacatc ttaaataccc tgcactagaa agtaagttag cccataagcc tgataggggt
      121 cagggtaata acacagaatg aacaaattac actgtcattc cacttaaatt atttaagtta
      181 tttaatttga cctgtagata gtctcttgtc ttctcatcat gcctgacttt taagtgggag
      241 gtcttcattc atgatgatcc tttaatggaa gcaaagcttt ctccatttaa cccatggtgt
      301 tatcaatcat gtacagggat aaatgaggct gtaagatttt gccagtatca caaatgacac
      361 tgtgacctga ggccaacatc tttatttgct tctccagtga ttcacttcag cagatattaa
      421 ccaattttat aatccatgaa aggcaaaatt aaaggacacc atccataaaa cagaataatt
      481 cctatcagca acaaagtgat gtctgtatta tcttataaat tatatggcca tacagtgtgg
      541 taatgtaatg aagt
//
LOCUS       KCOD01000455             750 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 50895pyr ultra-conserved element locus
            uce-5146, sequence.
ACCESSION   KCOD01000455
VERSION     KCOD01000455.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 750)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 750)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..750
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50895pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>750
                     /note="ultra-conserved element locus uce-5146"
BASE COUNT          223 a          152 c          154 g          221 t
ORIGIN      
        1 tcatattaat taaccatatt ggcatattag tcatgtcctg tagccacggg gagaagtgtc
       61 aatagccagg ctggggaatg aggaaaaagc tgcaggatgg ggcaaaactg tgaaggagag
      121 tttgggaagg acgtgaggtg ttagcctgat ccctggctct tcgtgccagc catctaaact
      181 tcctgaaatt acctcaagca ctgagatcca taaaatgaat gtggtaagga aagtgacagt
      241 gctcttctgt tttcctattg aaatgttccc tggcctagtt caacagaaac atttttacat
      301 tacaactgtg aaatcttggc ataaagctcc cctttgtgcc cttcattatt ttctcacaaa
      361 tatagtccat tgtcacatag ctgaagttaa tttgatcaac attgggacat ttaactttta
      421 tgtccggtca aaggagctgt ttcatgctca ttttgagtat tcaaaagaaa tgattgccag
      481 aaaaataatg ttactattaa caattcagag caattagttt cccagggaga ggcaatgtga
      541 tgcaccggct ccacacaact attctttgtc attttatgga tgctcatcag tcaactgtca
      601 cctcttctca aagacccctc caatctaaat gtttctcttt gggcttttcc cagaactagc
      661 agctgaatga gcaaaagaaa agccacttag tttctaggca aaggaaaact ttgctctaaa
      721 gatctgggtc atttgggaag atcctcaaag
//
LOCUS       KCOD01000456             596 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 51008pyr ultra-conserved element locus
            uce-799, sequence.
ACCESSION   KCOD01000456
VERSION     KCOD01000456.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 596)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 596)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..596
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51008pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>596
                     /note="ultra-conserved element locus uce-799"
BASE COUNT          149 a          158 c          145 g          144 t
ORIGIN      
        1 cccctccgtc acccaacaaa gtcttaggtt cttcccgctt gtaatttgtc gctaatcagc
       61 tgtcagtgtc ggagcaatga tgagaggttc atctcttgct gagggtaatg gccttaaaag
      121 tcaccgagtc aatgtcaatg ggatcgctcc aattcaatca gagccctgga tgaggaatgg
      181 cccccgctga cattagcact cattttgagc ccaagcatct gggccctagt aaataaccat
      241 cagtgggtgg gtctggggga caggtcatta gccccacgaa aaataaatat cgtttccctt
      301 gatggctgcg agtaatttag ctcagacgag gaaatttcac cctagattaa gtatgatgag
      361 ccaatatcag tcagaggagg ccaaacagtg agagcttgat gagatagagg gaaatttata
      421 tgcagctggc tgaatgcaag atgagtttaa agaaattatg ttctcttcca ctccttgtcc
      481 atgtgcaatg ccgggcactg tggtggctga caccccctcc ccacaccctt ggggctcccc
      541 cagcccacag gcacacgttt gtgggctccc tgccctccca ccagcagcag cccctg
//
LOCUS       KCOD01000457             628 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 51117pyr ultra-conserved element locus
            uce-7987, sequence.
ACCESSION   KCOD01000457
VERSION     KCOD01000457.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 628)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 628)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..628
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51117pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>628
                     /note="ultra-conserved element locus uce-7987"
BASE COUNT          220 a           90 c          115 g          203 t
ORIGIN      
        1 aaaatataat tagatttatt tttcaaggaa gaatataatg tttgtcagga gttcttaatg
       61 agatatttac ctgtattaga caaaactata cccacatacc cacagtgttt gtgcttgtta
      121 aagcctttca gtcattctag gcttagggaa atagtgtcca aatgtaccat atttagcttc
      181 tatctcaaat tctcccgagc tgtcaattta ggtgttaaag agaccatttg taaagcttgg
      241 ctgggatttg ccattattga ctggaatgtg tgtttatcat tacattcaat gatgaaagtg
      301 gaacatgtag catatgaata aatgtcagca gatgtttctt ttaaatggcc tgatttcaac
      361 ctcctgttgt ttgtcttgaa tacaaatatt aaaaaagaaa aaggcagaat tttttatgac
      421 ataagtgcaa gggtagttat acaacaaaaa taatgatgaa agtcagagaa gaacgaagaa
      481 agtataatta ataagaatta tgttgatgct ttcatgctac tatctagttt gatgttataa
      541 aagacacaag aacagcagtt cagtgtggga tatatcactc cacagtcact ccataagaag
      601 taaggaaaac ttgagtctat tctcagaa
//
LOCUS       KCOD01000458             581 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 51228pyr ultra-conserved element locus
            uce-7520, sequence.
ACCESSION   KCOD01000458
VERSION     KCOD01000458.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 581)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 581)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..581
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51228pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>581
                     /note="ultra-conserved element locus uce-7520"
BASE COUNT          201 a          111 c          143 g          126 t
ORIGIN      
        1 aaaaactgat tttcagaagc tcatatattc aaatctccaa agtctatttg aaggcacatc
       61 tgaaggtgca ccctgcaacc tgtgtgtagc aaactctttt gaatcttgtc cttgaaacaa
      121 aaattagtgc cccatgggag ctcagcagtg tagacaacca ctaactgcag aatgactgaa
      181 agcagagctg agagtccttg cagctgggag ggagaagggg atgagagagc gaggcaagat
      241 gagaaaagcc ttcaggagcc atttgggaga cactcactgg gaagaagaaa gaaagacatg
      301 cactaaaaac aacagaaaca caggtggaaa tggcctactg ggaaatcagg ctgtcaacaa
      361 acaaaagccg aaggccagaa agcagtttca gtagcagccc ctgctaacag ggcttcagtg
      421 ttcagtaaat aaattagcag caggtttgac tgtttggaaa ttagtagtga catgatgaaa
      481 gcagcaaatg acttgctttt atctggagtg gaagcactaa acttccaaag aaatccttgc
      541 ctgtattagg agaagcagag atgcttatat cagcttagac t
//
LOCUS       KCOD01000459             639 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 51335pyr ultra-conserved element locus
            uce-400, sequence.
ACCESSION   KCOD01000459
VERSION     KCOD01000459.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 639)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 639)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..639
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51335pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>639
                     /note="ultra-conserved element locus uce-400"
BASE COUNT          209 a          132 c          115 g          183 t
ORIGIN      
        1 ctatgtaccc aaagcaaagc tggcatttgt tgggcatcaa aaaaataaat aaataaaacc
       61 acacaactgt cgggagggct ttctctgaaa actggctgat atacctttag caaatgaaag
      121 ggcaaaagag atttcatgca atgctagttt gaaagcatcg gttcattaag gatattaatt
      181 ttctgataac tacacattta agcatgacac actggagcag tatctacagg atttagcaat
      241 tattaatgcg tgacagtttc aaatgctaag tgaatcaatt aaacagcagc attcacaatt
      301 tgagaagaga taactgcttc ataactgcct aagactacaa ttttcacatg acaaaaaagg
      361 gccattcagg ctccttcaaa acctgacagg tcaagaaaga agtttgaaac aaaagcacct
      421 tataaccatc atctctcctc tttacttgtc agatcaactt tgctagtgtc tccgctgaaa
      481 tggcatcacc atgccagctg ccacaaggtg atttttcatg tcttgtcaaa gaaatctttt
      541 attctatttg ctctgcatta acatgttaca tttattgatc aagccctttc tgcagccaca
      601 gcagggcact gtgctcttat gcctaagggg gctttgatg
//
LOCUS       KCOD01000460             783 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 51444pyr ultra-conserved element locus
            uce-3448, sequence.
ACCESSION   KCOD01000460
VERSION     KCOD01000460.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 783)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 783)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..783
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51444pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>783
                     /note="ultra-conserved element locus uce-3448"
BASE COUNT          286 a          170 c          105 g          222 t
ORIGIN      
        1 actacgctaa caaaatttaa ataaaatatt ggtttattga acgtccttta tatgaaacag
       61 atttgtacca aaaaggtgct ggctaaaaag aagaattaag taaatgccat ttgttaacat
      121 ttacagaagt actttgcccc ttacaaccag ctgagttgca tgaaggtgtc agactacttc
      181 taatacagaa tcctcaaggc taccttaatg aaaatcagtg taaaaatgaa acttactttc
      241 caataactgg tacaggtatt atacaaaaat aaaactgctg aggaactttt aaacctctag
      301 cagattgttg cccacggcac ttacccttga ttttccttca gcatccttaa acagctccac
      361 gtatgtaacc tcaccaacta cataagacat acaaagggaa aataccaaga gacaatgcat
      421 ttaaacacca gtatctttct ttactgtgcc cctgtgcaca agtctacaga gaatcaccta
      481 ttattcacca acaatcaaaa ccagaccaac atacctcctg tcaatggcta tataatttag
      541 ctagttttca gaaatatgca gcagccacat tctcaaaagc taaaaacaaa caactatatt
      601 taacctaatt catactacag atcatatttt ggccagtatg atatagttgg tgaacaaatt
      661 cagatataca cagtccctta acctaacaaa tggtcaacgt tcactgaaaa gtgttacatt
      721 tatcatccta ctcacaacac ctgttttaag gtgactttct acctgaatat cttcaatcaa
      781 aag
//
LOCUS       KCOD01000461            1015 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 51557pyr ultra-conserved element locus
            uce-330, sequence.
ACCESSION   KCOD01000461
VERSION     KCOD01000461.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 1015)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1015)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1015
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51557pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1015
                     /note="ultra-conserved element locus uce-330"
BASE COUNT          317 a          205 c          177 g          316 t
ORIGIN      
        1 tgttccataa ttataaatct tctgaaactg taactcagga aaagactttt caaataaaat
       61 gtttcccaga aaagaatatt tggcagcagt tggctcttgt ttttcctaat aaccattaaa
      121 agtctgccct agtaaaccat tttactgcaa cgtttgaaat ggtagagttt acattttatt
      181 taatgaatag ttgcagagca ttaaagcaac atctcgtcgg caaaacagct ccttatcctc
      241 gctttgtctc aattggtttt tttacatttc attttcaatg acatgtcagc cgtctctcac
      301 caacctcaaa ggaaagttga atgcggggct tacaaagtta agctgacatt tgctctcttc
      361 caataaaaaa tatttagtcc attaaacata aatacctgtc attatgatac atggactggg
      421 tacaagcctc ccgtttccct ctgatgttta ttacatccaa acaactgcag tgcctgcatg
      481 ttttcaactt tagtgtattg attaaacttt taaatggctg ccatataacc cagggacatc
      541 aggaagatta atttgcgtca atgttcatct gtaattcatt agccatttat tctttacaac
      601 cacatgggct atcaagaaaa tgcaggccat ttttcactct gcacaggctt gggaacagat
      661 cctgaaattt gtgctgcata caaataagct ccccaggccc ggccacttaa actgcttggc
      721 ttttcaaaag ttaaagttgg gaataacagc agtaaaaaac cagaaatgga caaaatatac
      781 gtcctcaggg taccagggat ttaactgagt ttgtccactg tcttttcatc catggattat
      841 ggtttcttat ttcagtcaga ttataataac tgaaacttgt tactgtgcaa aggccataaa
      901 taaaatgagc tgtacccccc tctaatatct tctaagatgc agttacttgg agaaagctag
      961 aaagcggcag tgaagtataa aaagctcatg cctcaaggag gctgtagctg tgaat
//
LOCUS       KCOD01000462             554 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 51669pyr ultra-conserved element locus
            uce-7636, sequence.
ACCESSION   KCOD01000462
VERSION     KCOD01000462.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 554)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 554)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..554
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51669pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>554
                     /note="ultra-conserved element locus uce-7636"
BASE COUNT          159 a          113 c          113 g          169 t
ORIGIN      
        1 agaacaaaga cttctggatt tatctgtcac tgggatggaa tatgcaggaa aattgggcac
       61 agtttatttt cagcagaaga tccaccatat tcgtggcaat ggggtggatg aaaagtgtaa
      121 ggccataagc actacagtat gaagaaattt ttacattcct ctgcttggca tagtgcaggt
      181 ttcctttgta ctgttttcta ccttttgact agatgagggc cagagggcaa ttttctccat
      241 gctcatgtaa tcttgtgccc cctgtgacta aataatggtc attatacaaa ctatattcaa
      301 ttgtataggt ctctgtggct ttatacttag gattactatt ccccacagac aatagtgaga
      361 ataccaggtt aatacagctg tgacctcact gtgctcaatt taagctcagg cctcacaagg
      421 tgagaggctt gtgcatttac ccactgaacc aatcagttaa aaaactgatg tgatatctac
      481 cacatgttgc tccctttttc atgagggaat tgctctgtac cccccataag agtttcaaaa
      541 gctcagtaac aatg
//
LOCUS       KCOD01000463             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 51776pyr ultra-conserved element locus
            uce-1745, sequence.
ACCESSION   KCOD01000463
VERSION     KCOD01000463.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51776pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-1745"
BASE COUNT          240 a          144 c          137 g          181 t
ORIGIN      
        1 gcaaaggtat aaacaaaccc aaacaatatg gacttacaga cattagcgcg gaacaaaaga
       61 gaggaggaaa agcaaagcca actgatcaac attaaaaaaa taaaagactt tgcaagctcc
      121 caaaaccaag cccttcccag ctggaacaac aaagtgtctc atcctggcac ctctccgtgc
      181 tcgggaacag tttgtagcaa acagcccgtg atatgaaaat gtatttaatg taattaataa
      241 tttaagaagt gagagcatgt gctcttggag agttaaatgc ttgtcagagt gatagatgca
      301 cgcttcagca ccaatacatt tcgtacgaag agcagaggga ttttgcaaac ttgtgttgac
      361 cttgggttgc ggtggagagg aggcagattg caaaggcacc cgcgtacggc gggactgcgt
      421 cagctcacaa tttacagccc tctccccaat taaaggactg taaaaacatt aaaattaatg
      481 cagtcttaac tccagagcag gctctacttt cttaattagt gcataattat tcagtttttg
      541 atatcctgga aaattatcac atggaaatta ttttaggcac agtaacaata gcaaaaatct
      601 ctctaccccc ccaactcgat taacatgtgg aagtaattaa cactttatta cagtgaaaat
      661 actattactg ctaatgttta atgacttttg ccattgcatc at
//
LOCUS       KCOD01000464             560 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 51887pyr ultra-conserved element locus
            uce-3817, sequence.
ACCESSION   KCOD01000464
VERSION     KCOD01000464.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 560)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 560)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..560
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51887pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>560
                     /note="ultra-conserved element locus uce-3817"
BASE COUNT          158 a           94 c          114 g          194 t
ORIGIN      
        1 aaaattattt atgtagatca ctgaccactc ctctccttcc atgagctttt aattgtgctt
       61 tgctgctcat gtatttaaat gtctaggtta gtgtttattt gtttgactaa ctgcaagggt
      121 ggatgggtaa aagaaaggtg ggattgtgtt ttcctcttct ctctctcact ctctcttttc
      181 taaacaagct aagagttttt ataattcatc acctggctga cagatgagtt ctgctggaga
      241 atattagaaa atgtctcaaa tctcatatat atgctaatgg tatgctgaga ctggttggtg
      301 gtatgccgga gtttttaatc tgtctcgacc agtgtggaaa gtggaggaga caagtcattg
      361 cactcgacaa tttatgatca aacaactgaa ttgtaaagga agaaggacat gcagaaaagg
      421 agagtaattt tctgatttaa cagcgttgtt actacaaata aagaaatctt gattttgact
      481 gcactcgaca ttaaatgagt ttcctgtgcc ctgctctgaa tttttcattt tcagatttgt
      541 ataaagcacc ctgcttagat
//
LOCUS       KCOD01000465             707 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 51994pyr ultra-conserved element locus
            uce-2184, sequence.
ACCESSION   KCOD01000465
VERSION     KCOD01000465.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 707)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 707)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51994pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>707
                     /note="ultra-conserved element locus uce-2184"
BASE COUNT          201 a          155 c          133 g          218 t
ORIGIN      
        1 tctgtctgtc tgcagtgcta tgtcagggta tttgctgtag gtattaaggc agttagtcat
       61 ctctgctgct gagcctgcag caatatttct acaacttcaa agcccttaca aagaataata
      121 tcttttggct aattaaatca ggatataatg taacaaatcc ttctcttcct tgagtttctg
      181 ctttcataac ctaatcaggc attttactga gtgaaacatc tctattaagt ctcatttctc
      241 agccacatga tacaaaaaca ggatgataat tgaggctgca taattgatgt gtgcaatgac
      301 agaatataga aaagggctcc attagccagg tcacatcatt agcatacatt acgttcaaca
      361 agattgctct cttcacctcc tatttattaa tgggttaatc cagtcccatc agcctgaata
      421 catcattgtt taggtccttt cctgtaagat acagcagctc agtttgacat taggaaagaa
      481 ttgctacgga gggcaataaa atcccgtaag tgtcagggtt gcagtggtgc tgtttgcaga
      541 agcccttggc tccccaagaa gccaaggatt tcatcaagtc tgcagcacca agtggactcc
      601 tcgaatgatc ccgtctgtct ttaatttcct gtctggatta ccacatttct cagggagcct
      661 ctcccactgt catattagct gctgtttaaa aagaaattca aagctaa
//
LOCUS       KCOD01000466             625 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 52106pyr ultra-conserved element locus
            uce-2853, sequence.
ACCESSION   KCOD01000466
VERSION     KCOD01000466.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 625)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52106pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>625
                     /note="ultra-conserved element locus uce-2853"
BASE COUNT          187 a          107 c          114 g          217 t
ORIGIN      
        1 aaactgggtt tgcagtgaaa acacattctc atcttcagca gtgggggagc tgcctggtac
       61 gacttagagc gtaggatcat atttaataaa gagatattta gtttgctatt ggaaaaggat
      121 tacttcagaa gatataaaag ctactttttt atagaacttt tgcataaatc ttgtatccat
      181 aacctgatct agtgacataa atattagcag cttgtttcta tttcacctgc tgtagaacca
      241 ctgctgtcct acagcaataa ccagcaaggg aatagagcta tttgctgctg tcataaataa
      301 gacagggtgt cacagctgtt ttcatttgac tgagcagtaa tggagttaat tatacttcca
      361 gtctctttgt ttttgatctg tgtttccaaa gtcatctgag cttcttgaat tcttgcaatt
      421 ttttaaccct tttttctact cacctggatt agatattgaa gatggtttca tggtcttatt
      481 agtgttctac aaaaatctca aaaatcaatg tatttagttg tattgaacaa cataaagaga
      541 gtatggtctt tttgaagatc agacacatag agatggctag caaacaaacc tgttttcttc
      601 tccagcaatg cacataattt gcttt
//
LOCUS       KCOD01000467             715 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 52216pyr ultra-conserved element locus
            uce-4231, sequence.
ACCESSION   KCOD01000467
VERSION     KCOD01000467.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 715)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 715)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..715
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52216pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>715
                     /note="ultra-conserved element locus uce-4231"
BASE COUNT          211 a          136 c          144 g          224 t
ORIGIN      
        1 tctgctgcag gaagttttaa aaattcacat tttcttcaga caagcgtggg tcttcctaat
       61 gaaacctggg aacgaggtgc tctcacggaa gctttgaaag tgtatgcact gtacttcata
      121 gctgagctgt aacaagactt taaatgacta aacagtgttt agattgaaca tgaaaagagt
      181 cggcatgaaa agataggttc aaaatattac atgatgcttt gcaaaagtgt aaatgtgccc
      241 gcctttattt tttttttcct cttggtaaat ggcaaacgtt tacaacccaa ctaaaacagt
      301 accaagagaa atcctgtgtt tgctctttgg aagatattca ataaattata gtgagctgca
      361 aatgtcactg gattgggaac tgtaagagct ttacctttaa gtctttaagt aaagacttgc
      421 agctggtgca gtggcttggt aatccctaat gataagctgc ttttaatgtg ggggtgaggc
      481 agttttcaca cagatattac tgcattaacc ttactctagg tacagtgcag gtgtgcacaa
      541 tattgtgctt tgcagccttc cctactttat tctccccgag tatccgaagc ctgctttaac
      601 agatcctctt ataccatggt gaaaagattg cagttcaaac ctattatcaa caaaaacctg
      661 ccaaaagggc tacattgtca gactttatga tggtactaac tattctgttg ttctc
//
LOCUS       KCOD01000468             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 52326pyr ultra-conserved element locus
            uce-5396, sequence.
ACCESSION   KCOD01000468
VERSION     KCOD01000468.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52326pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-5396"
BASE COUNT          225 a          113 c          104 g          192 t
ORIGIN      
        1 ttgttggcaa taatactatg agatataact tgctttaatt ttgtattcca aacccttcta
       61 aatattttta aagtttcata aagtgaaagc tgtcacctaa agatggtaaa cttattactt
      121 tagtttttag aaagtaaata tatgtgtatt tttaggaaac agatgtcact catatccttc
      181 ctttaaaacc aggaatgttt aacctatcag cctgttgcat ttgagacgtt aaaatgaaaa
      241 atgacatcta tgcccattaa tatcgtcaat gtataaacag cacagcgtga cacattcttg
      301 agagctgaag gctacaaaat ctctctgaaa cataaataac aaagcactca gaaggatatt
      361 tgatgttgat attcatctct gagaaaaaca ctgctgcctg ggcttcttat gaaaatagat
      421 gcggcccaaa tggatctcct gtaattggtt tcagatagcg aggtcaaaag aaatatgata
      481 caagaaacta ttatgtggaa caggcgaaac aagaatgttt atacaggcac tccctattta
      541 tactgacaag aggtgtacac tctgcagaaa accaaaacac ttgccagaag tcaaccagac
      601 caaatcccta ttttattttt tcaaatgact gcat
//
LOCUS       KCOD01000469             336 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 52433pyr ultra-conserved element locus
            uce-4849, sequence.
ACCESSION   KCOD01000469
VERSION     KCOD01000469.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 336)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 336)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..336
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52433pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>336
                     /note="ultra-conserved element locus uce-4849"
BASE COUNT           68 a           80 c           69 g          119 t
ORIGIN      
        1 ttctcctcca gcttttctct tcctcctttt tacctccctt ttcagcctct gttcttcatc
       61 cattatttag gcttttctga ctgtaacagc aacattcgcc ttgtatacct tgtgtggggt
      121 ttaaaatata gataaaagca gaaggtcaga cttgaaacac agattctgac ggttgctgct
      181 gactttgtct gggagctaca aaatctggag ctgtctgtgc ccagcaatgg tttcggtaca
      241 attgggtctg gttgatattc ctgccaactg tcttagtgtt ctttcatcca gcctttcagt
      301 ttctaaaagt tctggggcct ggctggcttc aggaca
//
LOCUS       KCOD01000470             679 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 52543pyr ultra-conserved element locus
            uce-6931, sequence.
ACCESSION   KCOD01000470
VERSION     KCOD01000470.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 679)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 679)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..679
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52543pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>679
                     /note="ultra-conserved element locus uce-6931"
BASE COUNT          213 a          135 c          119 g          212 t
ORIGIN      
        1 ctgacagacc cttaaccata gtggcactac tgggtgcagc tataatatta ccctcataat
       61 tctactatat aataacaaca aaggaaaaaa aaggtgaagg gtcattgtgc tttgtcttta
      121 gaattaagat ggctgtcttc atccttacag catactctta attctggaga cacatcttaa
      181 taacctctaa atagtttcaa caaaagagcc gtgtcagagg aatgagcagg ccccaaggtg
      241 tttcaactgg agtgttttca tctgccttta ttgctctatc cctctccaga attaaggcaa
      301 taacctgtga taaattattc aggaactgct acagggatca aagcaaaatc attctgttaa
      361 agtgctgttt gcaacatttg gcacttagtg tgaaaacttt taatgtgtgc aagctgaaaa
      421 tcaaggattt taaataattt aacagcatgg agtttctaca aaccagctaa agatagcatg
      481 ttgctattta actgcttttt cttcagttcc cttttccacg cgtttctagc aaatccgatg
      541 atgtcacaac tataaacaaa gtactactga gattccggct gcccaggcaa tagattactt
      601 acccacgttg tcaggagaaa tcttgatatt cttacgagtt aggcactgtt ttaatactgg
      661 aaatttttcc tattaatac
//
LOCUS       KCOD01000471             408 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 52652pyr ultra-conserved element locus
            uce-1162, sequence.
ACCESSION   KCOD01000471
VERSION     KCOD01000471.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 408)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 408)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..408
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52652pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>408
                     /note="ultra-conserved element locus uce-1162"
BASE COUNT          143 a           63 c           64 g          138 t
ORIGIN      
        1 ggagcagatc agaaatggta cagaattttg cacttaattt cctcagttat catttacaat
       61 aagaacctct tggcttgaca gccaagtcta aacagtagta aattagtaca aatttatact
      121 gattttactc taataatcgt aataaaagct tatagatttg gcactaatta cataaatgcc
      181 taatgatctt gaaaattact ctggttagaa atatattact aatctaaact ttgttgttgg
      241 ctggctttga aaaatcagaa cattagaaat ggttcgcttc acttctgcaa agcactttaa
      301 attgttcaag tagtttaaca tattcaagag gaaaaaaagc atttaacttt atttactgct
      361 ttaagttcag tttgtaggtt agccgaactt ggagacttta cccgaaaa
//
LOCUS       KCOD01000472             394 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 52753pyr ultra-conserved element locus
            uce-7151, sequence.
ACCESSION   KCOD01000472
VERSION     KCOD01000472.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 394)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 394)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..394
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52753pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>394
                     /note="ultra-conserved element locus uce-7151"
BASE COUNT          137 a           62 c           62 g          133 t
ORIGIN      
        1 atttgtatac agttccaggc aatataaaca tggctggtta gaatcattta tatagtataa
       61 gcctttgtac tctatacttc atggaagtta ataagtaggt gtcaaactct gaattaaaat
      121 tcccagaaga ggacacagca caaaggacaa taaaaatgat ttttaaataa tcatagggat
      181 aaatagcatc cacttctgac aaatgtaagt gctggaataa aatgttatta ggctacagag
      241 attttctttt gttcaggaag tatgttttat tctccagcag tgtcattcat catcctaatg
      301 agccctcaaa atgtaaatta aatagcaaag actgattcat tcaaaaacat ctttgtgctg
      361 tgtgttaaac cttttttcta cttttatcct tata
//
LOCUS       KCOD01000473             612 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 52863pyr ultra-conserved element locus
            uce-2785, sequence.
ACCESSION   KCOD01000473
VERSION     KCOD01000473.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 612)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 612)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52863pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>612
                     /note="ultra-conserved element locus uce-2785"
BASE COUNT          220 a           91 c           75 g          226 t
ORIGIN      
        1 tttttaatga agaaattgca cactcctgta caaaaatcac atatttacag catagagcac
       61 ctattgatac attttaactg aatttggaag tcttcataaa gtgagaaata caacgtttca
      121 ttacacaatt acagctaatt attttagaaa tacagtttaa atgcgagtta tcttaaattt
      181 attgcttatc tgactggaaa gatctaagca aaacctgaaa atcataaacc cttccagaac
      241 attatatttt atgcagtcca aaatgtgaca catggggtct ttaataattc actgcttgtt
      301 aacattaaac aactgttaac atgctcaaat aattagttat gcttgcttga catgtttgca
      361 tctttaataa ttgatgcatt tatcttaatt actaacagta ttatggtcgt aatatgcatc
      421 ttttttctat cttaaaattt taacaaaaac tgactttttg ccaaaaatga ttatcctcta
      481 agttttaatt actcattgta attaaattgc aagctgcagt attttattaa aaatatcttt
      541 cacaaaaaat atttaatgga aaagaggtga tttgttgttt atgcatcaca cttagtaaat
      601 atttcataag tt
//
LOCUS       KCOD01000474             624 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 52971pyr ultra-conserved element locus
            uce-5179, sequence.
ACCESSION   KCOD01000474
VERSION     KCOD01000474.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 624)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 624)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52971pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>624
                     /note="ultra-conserved element locus uce-5179"
BASE COUNT          185 a          153 c          121 g          165 t
ORIGIN      
        1 aaagtatttt accaggaaac acaacagaga caggacttct catttacagt gagaccccag
       61 agagcagtaa atttacatac acaaaggact agcatcaacc cctgaacctt taatgtttat
      121 tttgatagcc caccctgctg gtaaggcctt ttgttaggaa gccaggtaca acaaggcaag
      181 gatccaaaca aacaacactg gtagctttgt tgaccaggtc atatgatgtc ctgcccttga
      241 acagtacccc ttgtcttctt accctttgcc cctagaaaat gaagttagtt agagtccctg
      301 tggcagattt agcatttcct ttcagtgtct gccaatctat caaaattcag ctaccgctgt
      361 gaacccatca actcagtgca aaaaagaaca aggcttacca cggaccccct caaagtagca
      421 atcatttatc ccttcctgaa ctttagctga cctttgtaag cacgctagca gttgaagcat
      481 gtagcacctt ggcggggacg attgaggctg tgggtttttc tctctcccca ctcagccgag
      541 cttttgtttc cttccatcaa taagaaggga aataaactct tcagcaagag gatgcaattg
      601 aaacataaat actgcattta ggga
//
LOCUS       KCOD01000475             376 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 53082pyr ultra-conserved element locus
            uce-2745, sequence.
ACCESSION   KCOD01000475
VERSION     KCOD01000475.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 376)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 376)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..376
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53082pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>376
                     /note="ultra-conserved element locus uce-2745"
BASE COUNT          115 a           72 c           81 g          108 t
ORIGIN      
        1 ctctgctggg gttgggtggc ggaggagctg ccagttctgc ggagccggac aatgaggaac
       61 acattgacaa agtgttcaca ttattggctg atgggtctgc atcagtcact cattcacaag
      121 cacaaggtct aaattgcaga accaattaac ggcactaata gcccttgcct gaattaatct
      181 ttgagacaaa agaggagaga agtggaagag ctattagcaa atcaagctgt accatcccta
      241 ctttattgca ggaatctaag tgtctgtatt tggctattat gaactgactg caattacagc
      301 cctcatttaa aatgattaag tggttataat tatttttcaa ttaaaactta gatcttccat
      361 ttatacaaca ttgcag
//
LOCUS       KCOD01000476             508 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 53294pyr ultra-conserved element locus
            uce-3352, sequence.
ACCESSION   KCOD01000476
VERSION     KCOD01000476.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 508)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 508)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..508
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53294pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>508
                     /note="ultra-conserved element locus uce-3352"
BASE COUNT          122 a          126 c          103 g          157 t
ORIGIN      
        1 agaatcaaaa cattccagtg atccatcagg aaaatttgac tgaagggcag ctttaagcaa
       61 gccaaggtag caggcaaacc tgcactcctt tccccaccct gcaggacagg tagtctttga
      121 agactgtggg atggtgcagg tgtttgtttc agcagaagct gcagtgatgt gtaaaaagag
      181 agggaaagga tctcccagct tggcctctgt ataatgccat ttgaatcttt tttgtttggt
      241 ggtaagtttt aatagttatc ctttgaggat tttccctgcg agcttatctg aatacaccaa
      301 cagtcttttt tgtaatattc gcatttcccc tttggttcag ccgagcccac tgacagatca
      361 ttcaaattca attgttttat gtctaagccg aacagctaat taaagtaggg atgattaacc
      421 tgactggcag tgtcgctctc tctccctcgc tctctcgctc cctccctccc tccctccctc
      481 ctgttccaat cagtcttttt ctcacact
//
LOCUS       KCOD01000477             577 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 53396pyr ultra-conserved element locus
            uce-7469, sequence.
ACCESSION   KCOD01000477
VERSION     KCOD01000477.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 577)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 577)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..577
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53396pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>577
                     /note="ultra-conserved element locus uce-7469"
BASE COUNT          179 a          101 c          127 g          170 t
ORIGIN      
        1 gaacagaagg gaatgcaatc tgagttcaaa taaaatatcc cagggctgga gcttctcctt
       61 ttgacaggct gtgctgatcc catggagcag tgatgcttct agaaggtgag taaatgtatg
      121 tcaggacaag gatgatttaa gattacccca cttctgtgcg agattggatc tgttgtaacc
      181 ttcctaaacc tttgttacct ttgtaatttc agctgacagg ttaaatgcta atgcaattga
      241 taggggtgaa caagtggtca aggaacaacc tgatctgact gtataatgca tcagagaatt
      301 gcaaaaatat gcaggtcaga tataattttg acagaaaatg gctcgctgca agggtttatg
      361 tttccctgga cggtcttaaa aagagttgga ctatggtaag taccacagtg ctcataccaa
      421 gttaaactta atggtccaag ttctcaatat cttcagattt cattatcagt ttttattgga
      481 gctgggataa taagattaga gaattaagag aaaagttata cccattttct tcagctcagc
      541 agccctaatg tgcaaaggaa gtgacactca tttctca
//
LOCUS       KCOD01000478             573 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 53502pyr ultra-conserved element locus
            uce-790, sequence.
ACCESSION   KCOD01000478
VERSION     KCOD01000478.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 573)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 573)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..573
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53502pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>573
                     /note="ultra-conserved element locus uce-790"
BASE COUNT          185 a           86 c          116 g          186 t
ORIGIN      
        1 aggaaggagt taagcaaggt gaactcttgc ctatttaaaa tgagttagtt ttgtgtaact
       61 gcaggtaaac cagtggttaa cctggctgga aactgctgaa gaagaagaat ctgaagaaga
      121 agctgactaa agaaccagcc aaagccttaa attgtgcaaa catactgttg ctatgatgta
      181 actgcatttg acctaaccac tgcgaaaatt cattccgctg taatgtttca caatatttaa
      241 agcagaagta tgtcagtagg atattctctg caaaaggttt ttgtagtatg tcttaatagt
      301 ctacaataaa aatattttag agtatcttta atgtttagat aactgtatta gcagcatgca
      361 ataattacat cataagttct cgagcaggtt gcaagggtct ttgctgccat ttatcatagg
      421 ctgtttttaa gttagaaact gaatagcaac actgaatact gtagaaatgc actttgctca
      481 gtgtaatact tgagttgttg caatatttga ttatccattt ggttgttaca gagaatcctt
      541 aactgtaatc gatggttgtt gccgtaatag tat
//
LOCUS       KCOD01000479             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 53611pyr ultra-conserved element locus
            uce-4176, sequence.
ACCESSION   KCOD01000479
VERSION     KCOD01000479.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53611pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-4176"
BASE COUNT          198 a          163 c           96 g          183 t
ORIGIN      
        1 ccacaagaac gagatccttg catttcagca ttatcgttaa aacaacaaca aataatgccg
       61 ctcttcactt ccacgatact ccacattcag cacacaccga gggtctcccc ctctgaaaac
      121 agcccatttg tttaaaaaca aacaggaaac aaaacaaact tacctgctgt tgttgcagat
      181 gcagcagttc tactgtgctt acttcagtgc tcgtgtcacc acttgatctt ccatctctgc
      241 tgccagcatc taattggctg cttagagtgc tcattccatt ttgattcatt gaactgttgc
      301 ttattgtctc tgtcgcagat tcctgcatca tgacttaata cctaaaagtg attaagaagt
      361 atcaattaac acacgcgtta caccttcaca cttccattat caagatgtcc ctctctgcca
      421 attacacaga cagcatcttt agaagaagaa aaaagcctcg cagagccgtt taccaagaaa
      481 aactctgctt tcatacagct gctaatcact ggaattatga tttctataag caagctttgt
      541 gtgcttacat ttaatggcca aaataacaca ccatgcacgc agcatggtca atagcattta
      601 tgaacaacta cgttttaaag tctacctata aaaccagttt
//
LOCUS       KCOD01000480             748 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 53719pyr ultra-conserved element locus
            uce-5277, sequence.
ACCESSION   KCOD01000480
VERSION     KCOD01000480.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 748)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 748)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..748
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53719pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>748
                     /note="ultra-conserved element locus uce-5277"
BASE COUNT          228 a          128 c          141 g          251 t
ORIGIN      
        1 ggtgattcca cctggcaggc tgttccaatg tttgaccaga gctattcagt ttcgagttta
       61 ggcagcagag agggaaacca gactcatagc aggagaaaat tggtatttgt ctgaacagca
      121 gaaggtccac atctcactca agaagtgagc ctatacaatg gctgtgctga tcacttcctt
      181 gggttttaga gaaattttaa ctttacagac ttcatggttg cttgatctca ctacagtaaa
      241 cagctccata tttttccttt tcatgtttta tcctgaagca acagagcatt acattaattg
      301 acttgtctta ttaattcaat aagctgcttc caagatgaaa tgcttagcta tgcttgcttg
      361 tttttggcac tttttggttg ttggaagaaa agctttaagg ctagaattgc tctgatgttt
      421 cccacagttc actgaataat tttatgcact actgaagatt tgccacattt ggaattactg
      481 caaactgcta ctttttcatc atagtataat ttaattcaca cttttagtat gataagaaaa
      541 catttaacag tttgcatatt tgagaagaat atttgttctg ccataaagtt atggttaaga
      601 attcattatg ggtcactcat ttctaggatt tgtaatttgg acttaagata catttagaag
      661 attaaagatg acatagaagc caccccattc aagtgaatta tatgcaagaa atccagggaa
      721 aaaattgacc ttgctgtaaa tatagggc
//
LOCUS       KCOD01000481             797 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 53828pyr ultra-conserved element locus
            uce-3863, sequence.
ACCESSION   KCOD01000481
VERSION     KCOD01000481.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 797)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 797)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..797
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53828pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>797
                     /note="ultra-conserved element locus uce-3863"
BASE COUNT          300 a          138 c          155 g          204 t
ORIGIN      
        1 tttatttatt tatgctttga tgaactgcta attgacttca tctctgaggt cacataaggt
       61 cataagaaaa taaactgagt caagtgcttc agccagatca gcttacacag agtaaccaga
      121 cttcctgctg cttatgagta cataaaaaat tgctcactta aaagcccacc taggacagag
      181 atttggaaag aactagctgg agcactgttg tctcagcatt tccacatgca aagagcaaaa
      241 aaattaaaga aaatagagtg gatataaaca gtactgtata ttgtgttaat acagcccttg
      301 tatggaagtt ataccctcca gtgaccttct agaattgtat cagcttgcta catgcatgtc
      361 ttcagagtcc aaacatgtgt gaaagagacc attcgtctac agaaggatgg atttcatttt
      421 gttgtcgctg gaaccgggac agcagacatg tatatttgcc acattgcaaa taaaattact
      481 tcaacagaaa tcacataaag tacaaaagct ttgaaagtcc agggtaaaat ttaccatcag
      541 gcaaatgatg acatcttcca cacatgcttt tggtgcccag gcacgagcca aaagcagtgc
      601 aaaaaaagct ttcatatgaa aaattaatat aaataaggtg tgttcatgat gattacttaa
      661 aaagaaagaa aagatggttc agaaaaaggg gcatcctgcc aaacatatta gagatataaa
      721 ccatggaatt ggaaaaaggg ggtaaaagaa agatggactg tgataaaata caaaagaaca
      781 aatacaaaca gatggac
//
LOCUS       KCOD01000482             561 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 53937pyr ultra-conserved element locus
            uce-2705, sequence.
ACCESSION   KCOD01000482
VERSION     KCOD01000482.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 561)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 561)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53937pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>561
                     /note="ultra-conserved element locus uce-2705"
BASE COUNT          173 a          110 c          105 g          173 t
ORIGIN      
        1 atgaagacag cagcaagtac atctttctta gacacccagg caggcaaaca tctctgaaac
       61 acgggggcat gaatctgctg ccgcagcatc catcatcctg tgagggacag tgaaaacatg
      121 tgctgtcatc tttgacattt taattgaaaa gaaagcttac acagatttcg accttaagca
      181 gtatgtttat acaagtgtat acagagaaat aatctgtcag ttcagtgcag gctcagtgct
      241 ataggagttg gtttagtaac tgaacaatcc aacattagct cacacacctt gccttgttcc
      301 atgcctcaat aatttttagt agaaatactt tgcctagagg catgcagtta ttaaaaaaga
      361 ggctcagctt gcttaaagtc tggaattatt agctcatggt aacaagcctg cactggagaa
      421 actgttggtt ctttgttttc ataactttgc tgtaattcac catcttattt tcagagacaa
      481 acttctgcat tgtttgggaa gaaatcactt caaaaagatt tacaaagctc ttttatctta
      541 gtatttctat taaattgcac t
//
LOCUS       KCOD01000483             724 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 54042pyr ultra-conserved element locus
            uce-2771, sequence.
ACCESSION   KCOD01000483
VERSION     KCOD01000483.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 724)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 724)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..724
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54042pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>724
                     /note="ultra-conserved element locus uce-2771"
BASE COUNT          256 a          124 c          129 g          215 t
ORIGIN      
        1 gtgctaaatt agaccattaa acactgtaaa gcaaacggtg tactgaaatg ctcccacagc
       61 cttgtaattt atactatgtt acacagggta gactaagttg ctcatgggtc tcgttggatg
      121 acttaacagt acattttcac ataattaaag tggacacagc ttagaaaaat taaaaggcta
      181 gactataaag ctcagctgca aataatatta aatggcatta tcaataacag agatcccagg
      241 gtttgcatat taattgtaag aaggtgctaa tttgagtgtt ttaagcttgc attcacaagc
      301 ttgtttacac gctttgttcc acctggacct gtttggaggt ttgtcaaaaa cctaacaagc
      361 agaaaaagat tgcatttgaa aatacacata catgtttaat taagccaggg ccaccgaaca
      421 ttcctcaata tatttagctg ttgagattta agcaccacca gagcatcagg cattatcacc
      481 ttttgaagta ctgcagaatc tttaatattt aaagcacaaa gcagacttta atataaaatt
      541 ctagcagacc acagaagatt aaagacgcat tataaatgtg acagtttgta aatggaacac
      601 cagtattaaa gggaaccccc ctgatatttt atagcatatt tttcaggtgt atactaaatt
      661 ataaatacaa ttaaatagca gtaattattc tctggaaggg gatggcagtt taactgttct
      721 agaa
//
LOCUS       KCOD01000484             782 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 54153pyr ultra-conserved element locus
            uce-257, sequence.
ACCESSION   KCOD01000484
VERSION     KCOD01000484.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 782)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 782)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..782
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54153pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>782
                     /note="ultra-conserved element locus uce-257"
BASE COUNT          256 a          122 c          144 g          260 t
ORIGIN      
        1 tttttatttg aatgtttttt gactgttcag cttcagttaa accttttact ggtatgcgga
       61 caagaagaaa agtactttaa cagacatctg catttgtaac caaattaaca tcaaaatttt
      121 gaattaagaa aatgtattga catcaaaaaa aggcttcctt taacaacaga tttctaacat
      181 aatacacatt gatttaagtc caacttttag atgtgataaa aaattagaac attgttgtaa
      241 ttagttcagg gagaactcag aagtaaactt acttaattta tttgcataaa ttgccattct
      301 gttatcttta aaagcaaatg caaattggct ctgtctgata tgatgatggt tatttggctc
      361 aaaagtgctt caatttgcgt agcaatctgg tgtcgtctct gcagtgaggc gatcccaggt
      421 aacatacaaa tcctgaatta ttccagaaat tagtatgttt aaagcatcaa tttaagtgct
      481 aattgcagta gtaatgagaa aaagcagtac tactgtgaga tttgcatcta ctgccccatc
      541 agtatgcctg gaacggctgc tgactggcag aggatttggc tgctaattaa ataattgtat
      601 gcatggcagt gttctcgtct gattcaatag atgaagatta atcctcagat aaatatgttt
      661 ggctggtatt gaaatgtctt agcagtttct tcaaaaagtg tgtacgttca cactgcgaat
      721 gactctatgc ctcctatgtt tgtaaataca gatgcatata agagggaaaa acataatgtc
      781 tt
//
LOCUS       KCOD01000485             568 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 54262pyr ultra-conserved element locus
            uce-4265, sequence.
ACCESSION   KCOD01000485
VERSION     KCOD01000485.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 568)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 568)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54262pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>568
                     /note="ultra-conserved element locus uce-4265"
BASE COUNT          190 a          101 c          102 g          175 t
ORIGIN      
        1 atttgattgc attgcagttt acatgtatac taaggccaga acctgtgaag atgatacctg
       61 cttaaaagga cccaggagat caggcaaaac tctgacagga gaaacagaat tgtgcagtcc
      121 agtgaagaat taaactactg ggagtaataa tatgggctga tgcactcaat atagcagtaa
      181 tgccctcgga gaagggtagg aaataattca gttcctctag gctgcacaga agctaaatac
      241 agtatgacaa gaaatagtag cagtactcat tatgtctgat tgctaattac ccctttgaat
      301 gatttggtta tgcctgctac tagataatta gtttagtaat ttatggctgc agcacaaact
      361 agtattttaa ttttcactga acagttttca caacacctac agttcagata atatctccct
      421 tttcactcaa tttcaaattg ctttttttga taactgatga aggaaccaag caattctttc
      481 aatttcccag catagcttta atggtaaatt gctttttatg taattgtatt caaatgcaaa
      541 ctatataaat aaaacagctc tacctgag
//
LOCUS       KCOD01000486             519 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 54366pyr ultra-conserved element locus
            uce-7866, sequence.
ACCESSION   KCOD01000486
VERSION     KCOD01000486.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 519)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 519)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54366pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>519
                     /note="ultra-conserved element locus uce-7866"
BASE COUNT          144 a           85 c          103 g          187 t
ORIGIN      
        1 tttttgcctg tctttttcct ggtctcttga gtgatttaaa tttaatattt gatatagctt
       61 ccattgaaat gctcattttt ttttactgac atgctctgta atgtaggtga aaggtcacac
      121 atacaatgtg atgaaaggca gatagcttta caatattttc atttttagca gaagcagtcc
      181 tgcgccagct gtaacagcag catctgtgac caacacacag gcttctgaag tcactgtgcc
      241 acaaataaat tccagtgaaa gctcaggggg taaggaaata gcatattgtt tctgttgaat
      301 ttataaggca gcttccagtt tgagtcttct agtctttact taacacatgt aatgtattct
      361 ccttgatacg catagttcaa tttcagaaaa tcattgctgt gatgtctttt agggcaatag
      421 cagtagtgtt ccaatgactg taggtctata gtttgtttgg ctaaatgagg tgtctgaagc
      481 tggaagaaca atatttattt ttagttcatt atgtagtta
//
LOCUS       KCOD01000487             625 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 54478pyr ultra-conserved element locus
            uce-4707, sequence.
ACCESSION   KCOD01000487
VERSION     KCOD01000487.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 625)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54478pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>625
                     /note="ultra-conserved element locus uce-4707"
BASE COUNT          177 a          149 c          142 g          157 t
ORIGIN      
        1 tggaagcctc ccttctgact gcagctccag acccaagcgt gtggccctgg ctgcctgtgg
       61 caccagcaga gcagggagca aaggtggatt gaactccatc accgagcgcg gccagcagcc
      121 tgtgctgaga ggctgagtca ttattttatt agcagggccc acaactactt taatgtgggc
      181 ttaggctgca aaaacaaaaa catacataaa agcatttgga attacttcat aaaatactaa
      241 atcacaatat taaccgactg acctttgctc tatgcagacc tgctaatttt agcaattaca
      301 gccatcaact tgaacatatc aagtgggcaa ctgtttaaca ataatgacat ctgcttggga
      361 aatcaaatta tgtctaaaca tctttaaatc cccactaggg gatacctgcg caactgttag
      421 tccctgttta ataggatttt aaactcacag ccggctgcac actgtggtgg cagcgggagt
      481 gacaacaaca ggacagacat cccattaagc agggagtgtc ctcagacagt gatggaagtg
      541 gtttggggtt tgacagctta atctgataga tgggtgcatt agctggatcc ctttgctcac
      601 cagtccctgc agatattgct cccct
//
LOCUS       KCOD01000488             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 54586pyr ultra-conserved element locus
            uce-696, sequence.
ACCESSION   KCOD01000488
VERSION     KCOD01000488.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54586pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-696"
BASE COUNT          233 a           91 c           84 g          194 t
ORIGIN      
        1 gtaggtacac tggtgtcttg acaataggag gcaaaaatag ctaaaaagaa gagagacata
       61 tctctagtct aaacaaaaca gtgtattttt aattgaaata acattcagta gaactgaaca
      121 tcaaaacatt taactttttc aaagttttca gcattaaaga attaagatga aacacaatta
      181 ggaaacagaa aactgcaaca ttgtagagga tggtcacttt ttgtatgtca tgtggcttta
      241 aaaacaagtc agataaatga tgatgccatt aaaactgaac taattaaaga aagcttcttt
      301 taagaactca ttaactgcaa cctcatttgc ataatgatgc atattaatta agttttaatg
      361 aatctgaatt tgcaccaagc ctattcatgt tggctttgaa acaaattgaa caaattagtt
      421 aaaagctttt tggaatctac ttttcacacc aaacaggata tgaatgcaat catctccaca
      481 aaaaagaaat atttttcttt taatttaatt caaaggtatg cagacccatc tattaattat
      541 ttttaaatgt aataatttcc accttttctt tgcaaaatca acagtattac taattcttga
      601 gc
//
LOCUS       KCOD01000489             457 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 54692pyr ultra-conserved element locus
            uce-2352, sequence.
ACCESSION   KCOD01000489
VERSION     KCOD01000489.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 457)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 457)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54692pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>457
                     /note="ultra-conserved element locus uce-2352"
BASE COUNT          110 a           84 c          103 g          160 t
ORIGIN      
        1 cttgtcacct catgctgggg accagactaa ggctggggac agaggttgca gcccaggatc
       61 tcacccagcc ctccctgggc attagccctg ctttggctct tgtataaata tctgctgcat
      121 ttccaccagg agttattgct gttatatatt ttacagacac tttactgtca tctaagtggt
      181 ttattttatt cccacagcta ggagaaaact acaaaaggaa ttttgtaatc tgaatgtgat
      241 tgtgggcaga gagtaatgtt ttgaaaagga gctgagagta aattatatca ctgctttatt
      301 gtgtttaagg agacttttct attgtgctag gagttaacat tagttctcaa agttattaac
      361 tggatgtggt tttattatga ctgtgtgttt tgtcaatgta tgactttttt tgttaggctt
      421 ttcggtgcca gttcggctgc aactttggca ccctcca
//
LOCUS       KCOD01000490             624 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 54798pyr ultra-conserved element locus
            uce-3825, sequence.
ACCESSION   KCOD01000490
VERSION     KCOD01000490.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 624)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 624)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54798pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>624
                     /note="ultra-conserved element locus uce-3825"
BASE COUNT          171 a          127 c          144 g          182 t
ORIGIN      
        1 gtgtttcact atacaagtgc ttttgaaata aggaaaaacg gggggaaatt gcagtgggct
       61 tagcagacaa aattgagcag ttgactgtgg caaggcatac agtacttaaa tgcaagagct
      121 gatctaatcg ttgttctcga ggaagctttt tgctgcattt tagcacacaa agcttttcgt
      181 tttctctttt gtggcttgag ctgctattta agaaagcaaa aatcaataaa cctttccagc
      241 tttcaatctt ttgccccaaa aggtgttttt ttgggtagtg ttttgtcatt cataagctgt
      301 ggcgacaaat ccttgacatc attcgtggat aatatcgatc agctcttccg ttgcgccaaa
      361 ggacaaatag aaatcattta tctgtctgga ctccaaaaca gcaaaagaca aagggctctg
      421 ccagccaccc atgacaatca gcagctgaag gtattagcag ggggtcaagt tcagaggtca
      481 gcggtcaaac aggttgtcat cagtttctca caggcagcag agtggtttta tttgccaaat
      541 cccagagcct ggtgggtgct ggtttgggtt aatttcttgt aaatttgggg tcttaactcc
      601 accttcccta ggcccaggca aacc
//
LOCUS       KCOD01000491             609 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 54909pyr ultra-conserved element locus
            uce-2971, sequence.
ACCESSION   KCOD01000491
VERSION     KCOD01000491.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 609)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 609)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..609
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54909pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>609
                     /note="ultra-conserved element locus uce-2971"
BASE COUNT          177 a          126 c          116 g          190 t
ORIGIN      
        1 gggagctccc aaatgttcaa ttcctctgaa aatctggcta ggagttacag ttttaaaggg
       61 aattgtcatg attatctaaa gtgtatgcaa tatacatctg gcttacaact ttcaaaaatc
      121 tttcagaaga taacggattt aatttttaaa tagagagttt acatgtccag taggaaggtg
      181 ttagaacttt gttgttaaat gtggcattgt ccctttaatt gcaaaatcta tagctgctgt
      241 agccatggta aaataattgt accaggtgcg cacgtctaaa taaggtgact attctacaat
      301 ctttaggaag aggaagtagt cccacctcgt cctccactcc ctcggtccta tgactttaca
      361 gagcatcctc ccataatccc ccctctgccc agtgatagca gctccttgct ctgttatagc
      421 aggggcccag tacatctgac agaagacaag aagatgtacc aagttcaagg atatcagaga
      481 aatggatctt actgtgtaag tggcttcaac tgccacgttg ttctaactgc atcatttgct
      541 cttcacattt tatgttctgt gcaagatgtc ttaagactta aaaaaattag attcttctcc
      601 tcactagtt
//
LOCUS       KCOD01000492             436 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 55020pyr ultra-conserved element locus
            uce-4598, sequence.
ACCESSION   KCOD01000492
VERSION     KCOD01000492.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 436)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 436)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..436
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="55020pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>436
                     /note="ultra-conserved element locus uce-4598"
BASE COUNT          119 a          108 c           89 g          120 t
ORIGIN      
        1 ccctttctgc tgcaaaatgt caccaattta ctttagcctg ggggcccatt tcgagtttta
       61 ccactaatat acgagaaatg catttttcaa gctgttacca cttaactgta ctgatatcag
      121 ccactcaggg gacacaatat tgtttacaca tcctgctcta tggaataagc acggatgcca
      181 aaactctgcc tgggttgtga aggagacgtt tactctctgt tttatgagat ttcctcgatt
      241 tgtggctgcc tcaatggtcg taaaaacagc tgtaaatcaa aagagcacca caaaattgca
      301 ataacaactg tcgaactcgg ctctaaaaag cataactccc agcaccagaa ggtggaaggc
      361 tgatttaata ccaggtgtgg gggagcccta cactgtgtct gcccacagcc tattttggct
      421 gctcccctat cgctcg
//
LOCUS       KCOD01000493             482 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 55127pyr ultra-conserved element locus
            uce-6521, sequence.
ACCESSION   KCOD01000493
VERSION     KCOD01000493.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 482)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 482)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..482
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="55127pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>482
                     /note="ultra-conserved element locus uce-6521"
BASE COUNT          135 a           97 c           95 g          155 t
ORIGIN      
        1 ggatgtcgtg tagacagact actgaggacc cctgccatgt taccagggag ggaagctgtt
       61 cccagctttg ttataaattt atgaagtgga agtcctgaca cagaaaccca agatgaagtc
      121 cactctgtca agtaggtatt tttctcatta ttcaacactt aacagggatg acaagattaa
      181 atagtcactc atcttctgtg ccattatacc tcctgtacga ttgcttcaaa ttaaatctaa
      241 cagtcaatga aatagtcaat atttaattta ctcattgcag gtggcgattt agctccagtt
      301 atgatatcat ttagtgacag aaatattggt aattatcttt ttatgactct tcagaaaatg
      361 tccatgcagc tttaagtcat gtgtcactct cgtgtggatt ttgaacacca gggaccagtt
      421 catttttcct gctttcctgg gaaggggact tgagtttcca gactattttc ctaggagcac
      481 cc
//
LOCUS       KCOD01000494             436 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 55231pyr ultra-conserved element locus
            uce-5830, sequence.
ACCESSION   KCOD01000494
VERSION     KCOD01000494.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 436)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 436)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..436
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="55231pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>436
                     /note="ultra-conserved element locus uce-5830"
BASE COUNT          121 a           76 c           97 g          142 t
ORIGIN      
        1 tctaatcagg agtcatcaac acctataatt agcagggttg ttcagactca ttgctttctc
       61 tttaatggcc ataggacatc caaatggttt taaattatgt accatgggct cctaatcagt
      121 ttattgaaca tcataaattg ttaaaaggag ttaatagctt gtgtttcttg gtagaaagtg
      181 ctaatactcg aggcagagaa ctcatcaaat gaacctcgtt agagaaggga ggagggagat
      241 tgcgtctcag tgtctcattt tgttttagta attagctttt actggattat ccgatccaaa
      301 tctttattca gtttactctg tcaaatctag tttgcatttt aaatggaaaa ttgacacgtg
      361 gaacaatttg tctcctgact gggttaacgg gtccactggc aggaggctcc tgtggggggg
      421 ttatcaccaa agctgg
//
LOCUS       KCOD01000495             632 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 55341pyr ultra-conserved element locus
            uce-744, sequence.
ACCESSION   KCOD01000495
VERSION     KCOD01000495.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 632)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 632)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="55341pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>632
                     /note="ultra-conserved element locus uce-744"
BASE COUNT          195 a          115 c          124 g          198 t
ORIGIN      
        1 caaacttttg gactccttgt gatctagcac atggagcctc agacgtaatc agaaaatgtt
       61 gtgtgaaaac aaggactgct gggttaaatt ccagctattc tgaactcctt ccttgctgct
      121 cgagccctga gctcgctggt cataggactc tgtgtgcagt ctgaattgat ttctgagccc
      181 agctaaggga aagagttaag cttgttctcc ccttctcgtt ggcagaaagt ttgcagttta
      241 aaattacata ctgactctgg tgtagagaca caagaaatta tagagcagac actgtccagg
      301 acaacgtata atttaaaatg tactaaagaa tgtataccac atggcaaagt aagtgaagtg
      361 cttcttcaaa tataagtgtt ttgcatagaa aggctgtaat tatccactcc tagggaaatg
      421 tttgcattca ttctaaatca atatttacta ttcatctctt gtgttcaaca aaacaaggat
      481 ttaacatttt tttgtttaat gaggtactaa gactgcaata atactacaat gtaattgtct
      541 tgatacaaaa tattgctaaa ttgtgttgct atttcgggag caaactgggg gtgtccctat
      601 ttagatgtta ctgcagtaac acacaattca aa
//
LOCUS       KCOD01000496             392 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 55452pyr ultra-conserved element locus
            uce-2172, sequence.
ACCESSION   KCOD01000496
VERSION     KCOD01000496.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 392)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 392)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..392
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="55452pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>392
                     /note="ultra-conserved element locus uce-2172"
BASE COUNT          121 a           73 c           92 g          106 t
ORIGIN      
        1 tttttctaca aaagcccagc gcagagtgac atttgggcag gcaggctgtt tctgcggaac
       61 agcaagatcc aaaaggcctg gtgtcaccca gttatgtagg acacaatctc gcctgaaaat
      121 gcacaatgaa tcgggaagga tttatgtaat taattgacca gtcttaacct gttatcgtga
      181 tgtaaggaat ttggaactca ttaatttggg ccctgacaga tttcatatta gagctggcaa
      241 atatggattg agcctcttat tcttgtagca gctggaattt ccatgacagt gaggattagt
      301 gaagaagacc tattgctcaa gtcaaactgc ctcttttgta atcagcagcc ctgctctgca
      361 ttaaaggggt aatgggaaag agaaaaaaaa aa
//
LOCUS       KCOD01000497             534 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 55561pyr ultra-conserved element locus
            uce-2978, sequence.
ACCESSION   KCOD01000497
VERSION     KCOD01000497.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 534)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 534)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..534
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="55561pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>534
                     /note="ultra-conserved element locus uce-2978"
BASE COUNT          155 a          109 c          106 g          164 t
ORIGIN      
        1 tggaaatgat tttgtaaaga acactttgag gtggaaggtg tttggctttg ttcctcttgc
       61 tttatggttt cactgggtaa tattgtttaa actccctggg actgaaatac tttgtatgtg
      121 ttgttatttg cagtgcatgc caagacattc atgggcacca gagccaacct ggcgagctaa
      181 ttaaataaat aaatgtatat gtttaaaaca gccttataag gagcattgga aatctgcaag
      241 atgagcgaat atcttataac ttcttccgca ggtgcgagga tagctacaag ccatggactt
      301 tctgtcctgc ttcttgtttg tggctttgtg aagggtgctt tgctttaatc taaaagtgct
      361 gactttttcc aatatcactt tctcttctta aagcaaagag caaatcgcct gtaaaatcca
      421 cggagcggac agcaaagttg accctaacct ccaaccacca ctctgcaccc aatgtactct
      481 aaatctctac acaaggagca ccttcttcag gaagtacaaa caaaattact aaat
//
LOCUS       KCOD01000498             503 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 55669pyr ultra-conserved element locus
            uce-6391, sequence.
ACCESSION   KCOD01000498
VERSION     KCOD01000498.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 503)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 503)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..503
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="55669pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>503
                     /note="ultra-conserved element locus uce-6391"
BASE COUNT          165 a           90 c           79 g          169 t
ORIGIN      
        1 atgtttactt ctcttgttat tttttctacg agcaggcaaa tcccaatcca aatgtccttg
       61 atgtactgta cttaatagcc tggtgacttc ttggattaga ctgatcgagc cagtgatgaa
      121 tagggtaagt atagttaaca gccattctta aacaactttg agtgtcatta attttgttat
      181 aggacagatt aatctgaaat gtcaggactt gctgtactag acctaaaatt gtattttcaa
      241 accaatttta acagattgta tttcactctt gacacaaaat tcatttactc gccttagatt
      301 gcagctttta ttttaattgt atcaaattaa atcagggcat agaaccacag aaaactaaga
      361 taggaggata gttgcactac cttctatttt ccttttaatg catttttctc cttaaaacaa
      421 gcccaaatac atggacattg ctacaggtta agaagagaaa caaacttttg aaatcatatg
      481 taaatcatac cctgacagaa gac
//
LOCUS       KCOD01000499             390 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 55877pyr ultra-conserved element locus
            uce-5664, sequence.
ACCESSION   KCOD01000499
VERSION     KCOD01000499.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 390)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 390)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..390
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="55877pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>390
                     /note="ultra-conserved element locus uce-5664"
BASE COUNT          132 a           72 c           80 g          106 t
ORIGIN      
        1 aaaagacatt cagctctcat cctctgaaat tctctgaaat tcccagtggg ttaaaggttt
       61 cagagggtgg ggaaagataa aggtctactt ctatgtgtat tatccattaa gaaagtgcaa
      121 gagaggaaac tttgaatttg gagagcaaac agtaatgagt ccaacatttt acatcttcaa
      181 agagcaaagc agggtctgcg agcaattaaa gttctgggac attaatatct tctgaccctg
      241 tggaaaaggg caatcaaatt ccaatcacgt ctaaaaaaca tctggacaaa tttgagcaaa
      301 tgatttttca accctccata tatttcttta aattacgctg tcatcggagg caagccacgt
      361 cccagagcat gaagtaaatg agagctgttt
//
LOCUS       KCOD01000500             733 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 55985pyr ultra-conserved element locus
            uce-77, sequence.
ACCESSION   KCOD01000500
VERSION     KCOD01000500.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 733)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 733)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..733
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="55985pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>733
                     /note="ultra-conserved element locus uce-77"
BASE COUNT          261 a          167 c          106 g          199 t
ORIGIN      
        1 actaattttt gagccaaatt aaataaatct atgtattagt aggtacatac actacagctt
       61 aaaataaact taacatgctt ttgtaacacc ttgcaacacc aatatttaaa acacgacaac
      121 caacgttctt gcagaactta cctgcagtca gaattcatta ataattttga tgagcaacag
      181 tctacttgtc tactctgtat ttgataacat atcacagtct actttcacat taaatcagca
      241 tctaaaccac cagtgtgtac tatcactcca cagcaaacta cttattacaa agaaaaaagg
      301 tgcaaaatta cctctggatg agcctagcct ggaaagtgat gagcgccgaa aggatggata
      361 accaaagtaa ctaatatctt ctgaaaacat agcatcagca tcaataatga cacttgggtg
      421 agcagaatgt atgtcagcat ccagaagaga cataagatcc tctataagag gagacaaggg
      481 tcttaagtga ataatcagct acttaaaaca tcagctagag agaccatcaa ctaaactcct
      541 atctattaat tgcgtttctg ctcttcagat tcaccagtgc aaactcatgt gcctcctatg
      601 cagccacatt tacaatcaag cttggcaaaa accagtttcc ctgcaagaac tgctctgtca
      661 cttatctaac cacatttccc aaacaagact ttcccaaaac tcccagaaat tcaaactttt
      721 gactgtcact tga
//
LOCUS       KCOD01000501             503 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 56094pyr ultra-conserved element locus
            uce-401, sequence.
ACCESSION   KCOD01000501
VERSION     KCOD01000501.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 503)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 503)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..503
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="56094pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>503
                     /note="ultra-conserved element locus uce-401"
BASE COUNT          146 a           89 c          129 g          139 t
ORIGIN      
        1 aaaaaagcag aggtgttttt gagatgctga tgtttaaaaa tgctgcccac cctttcaacc
       61 ctccaagata tcagataagt ttctctttcc tgcagggaga tgaagtggct gtcattatct
      121 ggaagggctg tatcatatcg gaatctgccg gcgcaggtca gcaagtccgg gctgttctgg
      181 gcccagctcc ggcactgaat tacatttcct gggcacaaag gctgcagaat gggtgggtgc
      241 tttgtcattt aaactgcata aagaggcaga aattgatttt tattgtggat cttcatatct
      301 aataaagctc tgaggggctc ttttcttctc cgattgaatg gccattgaat gctttcaatc
      361 tagttctgtg tttcatgcct aaactgaata gtggcaggag gaaaatagat ggggggaaga
      421 gaggccaagt cactttccag attgaaaagg gggaaataaa ttaaaataaa aatgaatcag
      481 agccatttaa gtggaaaggg gaa
//
LOCUS       KCOD01000502             566 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 56205pyr ultra-conserved element locus
            uce-4033, sequence.
ACCESSION   KCOD01000502
VERSION     KCOD01000502.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 566)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 566)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..566
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="56205pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>566
                     /note="ultra-conserved element locus uce-4033"
BASE COUNT          173 a          107 c          135 g          151 t
ORIGIN      
        1 gaaacctcat ctccttttca ttttccccag tttggtaaca tacatttaag ttcccctctt
       61 tttagttttc atagcaaata aaagctgcaa aggtggggtg gggagtggtg tgaattaaaa
      121 caaactaaaa cagagtccag gcacaatcac cttgtgtctg ggaacgacaa gggctttcct
      181 atcaaaggaa actgaaggtc acactttccc tcattgatct tgcaatgttt gttaattact
      241 ctgtcactga tgtggcgaag gataattaaa cagctctgtt tatatcttat atgcataatt
      301 atgtgcgctg ccactgaact cgtgaagact agagaatgtg cctctccaga aggggaacgg
      361 acagacagag atgagtttca gctgcattat taacaggagg aggaaaacat gcgcacacac
      421 aaaaggagga aagtttgatg gattcacaaa gtgcttagat caggggaggg gtgtgtgcag
      481 gtggagcaga ttaggggaag atctttcaat tacagatcca gcccagctga gtgacaaatg
      541 gagaattcaa ttcacccgaa gctttt
//
LOCUS       KCOD01000503             748 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 56311pyr ultra-conserved element locus
            uce-3144, sequence.
ACCESSION   KCOD01000503
VERSION     KCOD01000503.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 748)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 748)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..748
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="56311pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>748
                     /note="ultra-conserved element locus uce-3144"
BASE COUNT          228 a          163 c          199 g          158 t
ORIGIN      
        1 gactcaatga cagtgtcctt ctgtcccctg gcaggggaaa taacgccagc tgcaaaagaa
       61 aggaagagat aaatgactgg agtcacacgc agccttctca gtctttgaat ggtgaaacat
      121 gaacacaagc attgcaccct caactggagc ctggttctgc cctgcctgca cagagagccc
      181 tgcaggagca gagcaaggtg gacaaagtag cccagccagt caacattagt gaagcccttg
      241 gtttctaaca ctgagctgca ccgaatttga atgctccact gatgactgaa ttggttagga
      301 atacaactga acagcaggct gaatacccag cgaggtattg tgggtaatta gagattaatt
      361 acaatcccat agtttgtatc atggttcagg gtcagcacag ggtcagtgca catggcaaac
      421 ttagagagct gtgactggat ggatgacgcc agctcggagt ggctcagcaa agtgaagtat
      481 atagaaatga ggagccagcg aggctgggga gtggactcac agccagggca ctggcgacag
      541 cagtgacact gagttgtggg gcctggaggc actgagaaaa tgttaacaag cagcagagag
      601 aatacagctg cactaactat ccaactgcaa ccctgacttt tccaattaac cttttccagg
      661 ctttctaaga tttgggaaat ctggggcact gtcctgttgt caaagaaagc tcttaaagaa
      721 agaaaagtag tgaggaaaac tgccaaaa
//
LOCUS       KCOD01000504             235 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 56417pyr ultra-conserved element locus
            uce-5541, sequence.
ACCESSION   KCOD01000504
VERSION     KCOD01000504.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 235)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 235)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..235
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="56417pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>235
                     /note="ultra-conserved element locus uce-5541"
BASE COUNT           85 a           39 c           31 g           80 t
ORIGIN      
        1 tcaaagtttc taaccttgct ttgtacaata cacttttcat gttgctgcat ttcatcaaat
       61 tcatggaggt agttatatgt gtaaaaaaaa ttaccataaa agtaacatgt tgtattataa
      121 taatacatat taagtgtgca aaatgccgac agatttgtgt tgacccttta cagttgaaca
      181 caacacagat tcaacctaat ctaactctgt aaacctttaa attgatacat tagaa
//
LOCUS       KCOD01000505             416 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 56526pyr ultra-conserved element locus
            uce-4164, sequence.
ACCESSION   KCOD01000505
VERSION     KCOD01000505.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 416)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 416)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..416
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="56526pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>416
                     /note="ultra-conserved element locus uce-4164"
BASE COUNT          137 a           80 c           80 g          119 t
ORIGIN      
        1 aaatggcatt gacactatca gtttaaaaac ctcttattat ctggaagtac atggaaaacg
       61 gctcagctga acttgcattt tgtttcagat gcttaatgat tacaaagaag ataatttatg
      121 actgacatac ttcttgtgcc aagagaagag ttgaaagaac ctccagttac ctccattaga
      181 ctgatagaga agtctaaaag agcattacac tctgcagtgc catctgtcaa aatacgtaag
      241 tgaaataata gtagcaagct gtcacctatt gcttagtgat aagagtttta gacaaatcaa
      301 aacttctatg ccagaaaccc attttgttat gcgatccttt caggaaagtg ggggtccaaa
      361 ggggaactcc aggtaatcct gagtctcctt aatttgcaat tcctctgatg ccgaca
//
LOCUS       KCOD01000506             498 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 56633pyr ultra-conserved element locus
            uce-3057, sequence.
ACCESSION   KCOD01000506
VERSION     KCOD01000506.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 498)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 498)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..498
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="56633pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>498
                     /note="ultra-conserved element locus uce-3057"
BASE COUNT          177 a           80 c           62 g          179 t
ORIGIN      
        1 ttctgttact ctgcattttc tctaagtcta aaaattggta gtgtgtatga caggtccacc
       61 tcatttttct taatgatgtt tttattattc tttcactcaa ttaaaacaga aatggatatt
      121 gcatcttctg actgtataat tgttattgta atctgttttc gatcactgct tgggaaatgg
      181 gtccaaaaca acataaacta tccacagcct cagaatacaa gtcattttct tttactacga
      241 tacttaaaga gacatctatc atgttgctcc actaacatgt ttgtattaaa gaagttattt
      301 gtaagttggg aaaagacatt atgaaaatca ccttttactc caaagtattg tataactcat
      361 aacttataac tacatttctt aataaccatt caaaataata aggctggaaa ttgtgcacat
      421 ctaagtttaa tatataaata atgaaaatga atataaacca aaatatgctc aaaatatgaa
      481 tttatattac tctcaaaa
//
LOCUS       KCOD01000507             659 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 56740pyr ultra-conserved element locus
            uce-3259, sequence.
ACCESSION   KCOD01000507
VERSION     KCOD01000507.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 659)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 659)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..659
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="56740pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>659
                     /note="ultra-conserved element locus uce-3259"
BASE COUNT          213 a          136 c          144 g          166 t
ORIGIN      
        1 aaaactcaga aatctattat cagtgtgagc atgtgcttat tgatcagatt acctgtgtgc
       61 acctagtagt actggcacac acacacgcag gtaaatattc acacacatgt gcatggatac
      121 aggtgggtta ggggtgtgtg tgtgataaag gctttacaaa actgcacata aataaaaaga
      181 atggaccttc cccgtgaaac gtgagcgcag aaacactcac aagtggccaa gagctgctaa
      241 ataattaatc aatagagcag tgtggcagtt tgaaatgtaa atgtgatgga tgaaggtgtg
      301 atgcttgtca tcaagcagaa aatgatgtga ctggaatgga taacccacag tacctgctaa
      361 ctggcaaaag cttggacaca aagataaagt aaagccatca gaaagcagac ctggcaaccc
      421 ctaattcttg cctttgaccc acaattcact ttcatgtctc tgtcccagaa gagatgttta
      481 aaaaaatgat gaagagagat cttggggtgg gaaaggggtg aaaaaaacca tctgaagaaa
      541 tgctacctga caaggctgca ggctacgttc ttgagaacac ctttctttcc tttatgttct
      601 ccttctcctg ttaaataaaa atgcggctcc cttccctttc ttccaaaact ctcccgagc
//
LOCUS       KCOD01000508             498 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 56845pyr ultra-conserved element locus
            uce-426, sequence.
ACCESSION   KCOD01000508
VERSION     KCOD01000508.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 498)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 498)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..498
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="56845pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>498
                     /note="ultra-conserved element locus uce-426"
BASE COUNT          132 a           96 c          102 g          168 t
ORIGIN      
        1 aaattaatcc agacatttcc agggcaagtg tggctgacct tttgttcacc agctactgac
       61 cccagggtga atgaaagagg cttgcagaga gaaatgtctg ttgtttggct tcagtccctg
      121 gtatttaaat tgcattccct aatcgaatga aaaggctgtc ctctctatca ggttacagaa
      181 tccatggcaa catttggcct tttatatcca taatgttagc ctttttgttt gcagccaagt
      241 agagacacct ggagcaatgt taacattaac cgctttagca ttaatagctt cattatagaa
      301 gaatttctga tcagatagct gttacttttg ttatgttgct tcagcttgta ttgttttcat
      361 ttttgatctc cctgcttggc aaccgggcaa tgatttgcaa attttttttg tcttgattaa
      421 ttaagcaata taattatcag gaaccgtgct gcagtctttg cccgacaaag cttcggaggg
      481 aagacaatag taagtctg
//
LOCUS       KCOD01000509             521 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 56951pyr ultra-conserved element locus
            uce-4364, sequence.
ACCESSION   KCOD01000509
VERSION     KCOD01000509.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 521)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 521)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..521
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="56951pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>521
                     /note="ultra-conserved element locus uce-4364"
BASE COUNT          169 a           94 c          107 g          151 t
ORIGIN      
        1 atgtattcgt tggcataatc gctgataaat taaaagccca ctttcagtga gcaagattaa
       61 ttatccattt aaccaaatcc cttattgggg caggaaaagt ggagagtggg ataaagatgc
      121 aggtgggaaa aggggcagaa gctaggctgc agtattcagt tacatgtgaa atgatttgta
      181 attctgagta atcacttagg acaagccctt gcaccatttt atctatacat gactctaggc
      241 caaagtcaat actcatagta aaataatgag atgaagctaa cagagaccct ttattaatgc
      301 tccaaggagc aaatctgatg cttaagcttc tcccatggaa agtatccact tcttcctaaa
      361 aatgaacgag taggtcatga tggctggtag taactaggat tcttacctcc aaaaaaccat
      421 ggaaaatttc ctttcttatt tgtgcaccat gtcatgcttt gcccagttgc acaggaaggt
      481 atataaattt tgcattatgt gtagactcgt tagagaaatc t
//
LOCUS       KCOD01000510             901 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 57064pyr ultra-conserved element locus
            uce-1463, sequence.
ACCESSION   KCOD01000510
VERSION     KCOD01000510.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 901)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 901)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..901
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="57064pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>901
                     /note="ultra-conserved element locus uce-1463"
BASE COUNT          241 a          175 c          177 g          308 t
ORIGIN      
        1 tattctgaat ttctgctaga gatacaaatg ctgcgtgtgg cagtttcttc aggagaagac
       61 gtttactttt gtaataacat tgacaatatt ttgtagttgg gcaacgtttc caagaggcat
      121 ttgttgatcc ctaatttaca tagcctgcaa ggtgaaatag agttatgttt tatattccaa
      181 aggtatgctc ttttgttcat tcctgccctg cctttacatc tcccttttat ttggcttgct
      241 tcccccctct ttttcttttc attttcctct catttttcac catgatgtag ttaatttttt
      301 tttcagctca tgctacactt tgtcttgtct attgctatgt gacagaaaag ccagagacat
      361 tccatgtctg gcagtacacc tccagggaca tcttttgaac tctcataatt tgtatttatt
      421 gccacccact ttgtaagttc acagtttaat ttgccagcag tggcagtgtt aggccgacac
      481 agtaaaacaa gataacgtta aaatgtcaga acgagagggg gcatgaatga tgcattactc
      541 actgctagaa cttgcacttg tcatgccttt ccaccaaagt gatgttaact accttttgag
      601 agccttatct gactggtatt actcagaaat aggatcatta gttcactgct ctgattagaa
      661 ggttgctatg gttgattaac tcttctggaa ctgggatcac ggtgggaaca taacatgaat
      721 cacactggat tatgcatcta gaactaattt tataaatagt tgtttacaat tcactagtgg
      781 gctgacagga gtgagagcag agggaaaaat ggagcacatt ttaatggaaa cattcaaggt
      841 agatttcagt tgagctgttt ctccttcagc acagtgtgct aacggtgacc tattatgcaa
      901 a
//
LOCUS       KCOD01000511             842 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 57176pyr ultra-conserved element locus
            uce-82, sequence.
ACCESSION   KCOD01000511
VERSION     KCOD01000511.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 842)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 842)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..842
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="57176pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>842
                     /note="ultra-conserved element locus uce-82"
BASE COUNT          220 a          171 c          143 g          308 t
ORIGIN      
        1 cactggcctt gtcttttctt gctcaaggaa acttttgagg gtggattttc agtttgctct
       61 ctttccagca taaagcacct ctgtatttct ccaaagtgaa ttgggaacag atctccttgc
      121 acagggaaat aaaatatttt cccctgcact attttcttgg gagtatgcaa aaatcccatg
      181 tgcttttttt atgaactgga cccttctctt ttatagctgg tagtattcat gcttattaca
      241 atgccatatt atggcctcag acacttttta tgtccctctt acacagcacc ctagagaaag
      301 atgcttcact aagcaagaac cagtaaactt gctacagaat cagcggaata cttctcacaa
      361 aagtgcataa acttctgttc ttaaacattg tcatccttca ccttaacaag cacttccact
      421 ggtttctatg ccttgttagg tctatcatct ttttaattaa tagtgttttt acgaagccgt
      481 ctgaactgtg tcatttccat tatcagaaaa ccattgccat taatgaataa ttttcatttc
      541 tgatccttga tatcatgcta gttgatctcc tgtttccatg ccgccgaatg atagcatcgt
      601 tttctgccca cgatcaaatt taatttggac tctgattata ttatgctgtt gcgactgaag
      661 tgtcaatttt tgtcaggcaa ttaggagcta taacctgtga agttaagttt gataggcatt
      721 gtaattggat tgttacagta atagcttgga acattccctt tttttcttgc ttctttgatt
      781 cttgatgcat actttagttg tgagaacaaa ggcattttgt tattatgcaa ccataggatg
      841 tt
//
LOCUS       KCOD01000512             490 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 57283pyr ultra-conserved element locus
            uce-6459, sequence.
ACCESSION   KCOD01000512
VERSION     KCOD01000512.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 490)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 490)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..490
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="57283pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>490
                     /note="ultra-conserved element locus uce-6459"
BASE COUNT          162 a           88 c           85 g          155 t
ORIGIN      
        1 ctaggcagtc atttgtaatg gtacttaaag gggaaaagga acacacttct aacagcgaca
       61 tcttcaaaat ttttcctaca gttaatttct gtaatatgca agtatcatgt tcatggtctg
      121 ttagtcaaat taagagcatg ttatttaatg atctagactg caaaacatct tgatttgctt
      181 cttttagttt atgtcaattg tttgcataat atttgaaggt taatagtgtg acaatgatgg
      241 accaaaccat gcaaagaata tctttctaac aatggacaat ttccctgtga aatggattgg
      301 aaagaatgtg atagtgtaca gaagactata ttaaaattat ggcccttcaa tctgacttgc
      361 tcaaaggcac cattaaaatt agaaaccatt gtctcgaaaa ccgctgcaca cacgctcaaa
      421 cttgaataca gctcacttgt aggatctgct tgaattcttg cactcagaat tctgccaagc
      481 acagcttata
//
LOCUS       KCOD01000513             577 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 57390pyr ultra-conserved element locus
            uce-4643, sequence.
ACCESSION   KCOD01000513
VERSION     KCOD01000513.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 577)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 577)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..577
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="57390pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>577
                     /note="ultra-conserved element locus uce-4643"
BASE COUNT          195 a           82 c          100 g          200 t
ORIGIN      
        1 aatacatgta tgataaatta agcactcttt tctggggccc tttaaatgga aggaattgaa
       61 aacacaataa tgatataatt aattacggtc ttatatgtgc agaagaatga cacctttttc
      121 gattagtgtg aaatataagt gtcaaatcag taataaaatc ctgatcaata aaacaataat
      181 aacgatgttg ttaaaagcgg acctagaaag gtgttcatgg caacatgttt taggggttag
      241 aaaccctttt aaaataaacg gatttcatct ttacactatg tcatctaaat cattacaatg
      301 tttgtgtata caattatcat cagacgataa attgcagcta ttgaatggat taagtttgaa
      361 ctgcttgacc tcataaatct gggtttgtca tagcttcagc aaatgcttgt gtaacaatca
      421 gttgattaca tggcagagca gatgtatgta tgttaactgg aaaatatgaa aggatcaggg
      481 taattcagag ttcattggaa gaagtttata aatgtctgac aatatcatgt tctccatata
      541 cctttctttt ttttctattc ttttttcctc gtatttt
//
LOCUS       KCOD01000514             700 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 57500pyr ultra-conserved element locus
            uce-1055, sequence.
ACCESSION   KCOD01000514
VERSION     KCOD01000514.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 700)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 700)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..700
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="57500pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>700
                     /note="ultra-conserved element locus uce-1055"
BASE COUNT          235 a          122 c          118 g          225 t
ORIGIN      
        1 aaagcatgat aattttcttc tagcattgtc tgacatcact tgcctacgac aacagctgtc
       61 tgtgaaactg aaacccttat tcaggaggtt aatgcgaggt aggaactcca ttcagtgtta
      121 ttttggctta agggcataat gtcacaattt ggtgcatcct ttaatgactt tttctaaagg
      181 cagcttacag cttagaccta gttcagcaaa tttccttgca aggtccttgg aaaaagggaa
      241 tgggtaggga gtacaattga ttgtgtggcc aaattttttg ttcatgtctg cttactgatt
      301 tttgttcatt tcacaaataa acaaggcatg aatacatcaa cccacaaacc ataaacaata
      361 aagaacttca tcctgtaagt ttgctacggc cagcagtttg tggctgaatc tgctatttgt
      421 cataagataa atgataaagt gattgccatt tgtcactgaa tacacaagag aagtgttcag
      481 ctgtgaatca cacaaatgca ggcaacagta aatactgctt tcttattagt aacttcttat
      541 atctggttaa ctaaaaaatt attttaccca taccaattta atatgttaac aactttatga
      601 gaatatgcac atacccataa aacatttata gtataaaaat ctaaaattta ctacaattca
      661 ttgagcagga aaagatactt ctatatagaa aggtatttta
//
LOCUS       KCOD01000515             611 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 57611pyr ultra-conserved element locus
            uce-5065, sequence.
ACCESSION   KCOD01000515
VERSION     KCOD01000515.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 611)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 611)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..611
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="57611pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>611
                     /note="ultra-conserved element locus uce-5065"
BASE COUNT          143 a          162 c          141 g          165 t
ORIGIN      
        1 ctgccatgtg catgcacaaa cagggactcg gtgctcggaa ccgggagcag cagtcttgta
       61 aataatggcc aatcagcatc tcatctcctt taattccctt gcaatgcgat gattctgcaa
      121 gggtgggtcg gtcgtagctg caggtgctcc cggacggggg aggagcacaa aaatgaagtt
      181 gtttgcggct tttgattcca tccctggaat tatttacagc tgcaggcaat attaaactat
      241 gtagagcaag tgtcctcatt tacatgctaa ttcatttata ccctctggat tgatttctcc
      301 aattcatttt cagcccacta actcttctga tatgaattat attatcacct ccagaacagc
      361 agcagggaaa tgtgacgaag ccaccccagc tcttctgatc tctaattgcc ctcgctgttc
      421 ggagctggca tggccagctg cagctttgcc tcctggctac cggcacccag cttccttcca
      481 tttcctggag aaaaaccagc ggtgtggctc agagaggcca ctgccatggc ttgcaagagg
      541 acctttggaa atcattcctc tctctgccca ggaggaggaa ccacctcatt tcagagtcca
      601 tctgtgttct g
//
LOCUS       KCOD01000516             509 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 57719pyr ultra-conserved element locus
            uce-3152, sequence.
ACCESSION   KCOD01000516
VERSION     KCOD01000516.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 509)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 509)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..509
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="57719pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>509
                     /note="ultra-conserved element locus uce-3152"
BASE COUNT          149 a          105 c          119 g          136 t
ORIGIN      
        1 gaactgcatt tgaattaaaa gactaagaaa ggtctccgac ggctgctccg ggctgattag
       61 cacgaggcgc atgtggcacc aacagcgaat tttacagcgc acgtcgcgga taaaggagct
      121 gaaagccttt ccgtgacagc gagcagggag gtcattctgg caaccatttt ctgcctaggg
      181 ttaaacgtcc tcgccctgtc actgtatcaa ggttatctat tattggcagt gacaggtgaa
      241 aattaatctc ctaattattt cttgctgcgt aatctgcact gaaggagtaa cgtaaaagga
      301 ttacagtaca ccctctacgg aaggctttgc tagaaagcca atcatccagg gagatagaag
      361 ggatgtggaa aagagatatt tatgacagat ttccaaccat tttgaaggca gactacgcta
      421 taagtttata accgacagct ctggagtaag gatattcttg caggtatctt aacagcctct
      481 ttttaccgtt gataagattt atatccatt
//
LOCUS       KCOD01000517             798 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 57828pyr ultra-conserved element locus
            uce-1150, sequence.
ACCESSION   KCOD01000517
VERSION     KCOD01000517.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 798)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 798)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..798
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="57828pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>798
                     /note="ultra-conserved element locus uce-1150"
BASE COUNT          262 a          135 c          183 g          218 t
ORIGIN      
        1 aataatgcat acatagcaat aggagacttt ggatagaatt ctttcagctc tcttaaaccc
       61 aatctaaggt taatttataa taaataatta tagttttagc agtaaaatga gaccctgtga
      121 agctgagagg agaaacagtt ttaaaagctg gacgtgctca caggtaatag ctacgactgt
      181 gtagatcaga catcgacact gaaagaagca taaattcata taattaattt tgccattgta
      241 aaaatcattt gctaaaattt gcattattaa cattatcaag tcgctggttg gtgagacatc
      301 agacatgacg agtgagaagg gcagcttagg gagaattggg ctttaaaccc tcagcagatc
      361 ggagttagga tcaaaggcgc ttgttttatg tggctgtgtg acactttgaa gtcttgactg
      421 cacctacagc actcatttca tcaggttcac tggtgtctta atagcagatc aataagtttc
      481 aaagtcggag agttaatttg atactagtgc tgatgtggtc gtgctgggga agcagagaga
      541 ggcaggcaga gaaagcaagc ctattaacca tcctgatagg gagaggtgtg tgccaatgtt
      601 gatgggtacc tgtaaaaacc caaatggtaa atattgacct taaatatgaa agctccacgt
      661 actaaaggca tggagttgtt tacattgttg aaatagattg tatgcaagaa gcaccgttct
      721 tcagccgagc agtgcgaagt tgtaagaaag ttcccccagt aatgagaata aatgcacact
      781 cctaagcccc taaagcat
//
LOCUS       KCOD01000518             733 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 57938pyr ultra-conserved element locus
            uce-664, sequence.
ACCESSION   KCOD01000518
VERSION     KCOD01000518.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 733)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 733)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..733
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="57938pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>733
                     /note="ultra-conserved element locus uce-664"
BASE COUNT          229 a          143 c          129 g          232 t
ORIGIN      
        1 gtggtgtctc aaagccacag tggctgggtg tggaacagat aatgattctc atagaatagg
       61 aaaatgaaga gttacacggc attcaaagat gagttttctc taatctttct taacctttgc
      121 tctttctgta agtagtgtcc tcagaggagt attgcccaat tcaggagagg ataccacagt
      181 ataatggttc tcattcttca tttgggttat tacgattcat ttggagtttg atcctgtgat
      241 attatatctc aacattatat gacatcatta aagacatctt atattgtttt tgcctatggt
      301 tagaaattat gtctgcttaa tcaattccat tatgcattca accatccatg acacatcaaa
      361 ggctaataag atttttttaa aactttgctt gcttaaaatg atttccctcc agatcaagat
      421 gcagagcaca aaatattaat cagtttaaat aaatatcaag actacccaaa taatatgaat
      481 aattggcaca gtgcagtgcc tactgcccag ttcccaacag ctggtcacac tggcacatgg
      541 caccatctca acagtctttg agataatgac tttggcatct gccgatgagc gtttgctact
      601 gcccacagaa tttacaactc acaagtggga aacagaggct ccaacagaac ttttttatgc
      661 aaggtctttg aaatttatta atgtaatgca aacacaagcc ttccaaccca ttaaattgtt
      721 gatgttatgc gaa
//
LOCUS       KCOD01000519             679 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 58049pyr ultra-conserved element locus
            uce-5635, sequence.
ACCESSION   KCOD01000519
VERSION     KCOD01000519.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 679)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 679)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..679
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="58049pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>679
                     /note="ultra-conserved element locus uce-5635"
BASE COUNT          241 a          140 c          110 g          188 t
ORIGIN      
        1 gattcctgta agtataaaca ttctgatgaa gcaaaatgat ttagagttac aattaaaaaa
       61 actggagtaa gcaaaaagat acataggaaa cataataata atcctatccc aaaagattgt
      121 gctatccgag gggatctaga atattaatta gtaagttgtt gcaaacctat aaaaaatcat
      181 cccataatta ctctgaaaag ttgcaatttc aaagcaacac tgcagaatag catactggat
      241 taattatgcc agactgcagc aataaccttg aattaaagct gcaaccttct atttttaaga
      301 aacaattgcc tttctggttg atgaaacctg tcatcccatc aggtaacaga cgtgaccagg
      361 aaagagaaaa gcaataatga gtcaatccaa gctgtttgat acatttcaaa tcttcctccc
      421 acagagtgta gctgccacaa gctacatcac cagtctggtt cttgaaaact cgatctcctc
      481 cctgatgggt gaatatgtcc cagacattag ggccctttcc atctgcattc cagccttctg
      541 cttgaaaaac aaaacttggt cgtttttgac atcaaaagac atatgttgca agtaaatatt
      601 tatcacaaaa taggtgcaaa tccctgaaaa ccccatgggc aaattgagat atattctcta
      661 cccactcctt atagtatct
//
LOCUS       KCOD01000520             522 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 58157pyr ultra-conserved element locus
            uce-3308, sequence.
ACCESSION   KCOD01000520
VERSION     KCOD01000520.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 522)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 522)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="58157pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>522
                     /note="ultra-conserved element locus uce-3308"
BASE COUNT          144 a          134 c           99 g          145 t
ORIGIN      
        1 ttttttgtag ccatgtttgg caccataccc ctcccctgga caacctatta tttcacaaat
       61 ggatgctttc tgcagcctgc aaagaaaaag aaccctggat ctttaaccag ttcccttgtg
      121 gttttttgtt ggtaatattt ctgggtacaa agggttacac tttaattgag ctgtcagcat
      181 ctccaacaat cctataaaac tccgattatg cacggcgggg ttagtgacac acttgttatt
      241 gtggatgccc tatttgctaa acccgggaca ggtcacctca cccaggcgac cttcctgtca
      301 ttagcctcgt ctattcctac ctcaccgctg tgaaaatcac acaaggaaag gcttcaaagc
      361 ccttgccagg actgaattcg accaggagct aatcacccac aaatccagct caaatggcaa
      421 taattggcta aactgctcac ctctccagag ctcagcagta atttgggata ataaagaaaa
      481 gaattattca gctaactgcc ctgaaatgta tgctttgtga cc
//
LOCUS       KCOD01000521             514 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 58266pyr ultra-conserved element locus
            uce-478, sequence.
ACCESSION   KCOD01000521
VERSION     KCOD01000521.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 514)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 514)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="58266pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>514
                     /note="ultra-conserved element locus uce-478"
BASE COUNT          144 a           96 c           88 g          186 t
ORIGIN      
        1 aaaaccttca ttcttcttat catagttagc ctcaactttc taacagttgt aattgtccac
       61 agaaaacatt tcaagataaa tgcattatca ggttttgaaa ttttcttatt tttgtaaata
      121 ctaagaccta aaataagggc tatattgtgg attaagtgaa atatctcaag gctgtgcttt
      181 tctgataact gaacctgaag tgacctttct cagacacaat tacagagctg tatgtttttc
      241 ctttaatttc atcaggggtt taattagtat acaaataaaa cttcccttat cttcctttct
      301 acctaattgg cttgtctttg cttatatatg aagaatgtga aaatgggctg taattagggt
      361 gaccgtgtta accttttttt ctcaaatgta ctgttgccta aaggcctcaa agcctaaaac
      421 cagtgctttg gattattgct ttgcaatcac tatggctctc ccataggttt tctcatgagc
      481 agaagggctt tgggtgctgc aggttcccac tgct
//
LOCUS       KCOD01000522             345 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 58377pyr ultra-conserved element locus
            uce-1511, sequence.
ACCESSION   KCOD01000522
VERSION     KCOD01000522.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 345)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 345)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..345
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="58377pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>345
                     /note="ultra-conserved element locus uce-1511"
BASE COUNT          115 a           63 c           52 g          115 t
ORIGIN      
        1 tccactgttt aatatcttgc tgtcgttaag agacaggata aaaactataa atagatgtaa
       61 aaatgctcat ttaacagcag ttgcaataat gctcatcaaa cattttcttt tgagtagcat
      121 atggaaatcg tagagtactg aaagagttaa tgtgtttaga attcagtttc catcatactt
      181 gggtgactat ctctttaaat aatttaaatc ctctccatca actacaaagc tgttttgaag
      241 ccatttagct ttgttcttta catgtgttct aattaagaaa tgaccttgtc atcacacaca
      301 ccagaaatcc tggattattt cctgcagcaa aaatctacga agcca
//
LOCUS       KCOD01000523             800 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 58490pyr ultra-conserved element locus
            uce-3451, sequence.
ACCESSION   KCOD01000523
VERSION     KCOD01000523.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 800)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 800)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..800
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="58490pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>800
                     /note="ultra-conserved element locus uce-3451"
BASE COUNT          264 a          150 c          185 g          201 t
ORIGIN      
        1 tgccaagaac tgccatctgc cacctacaag cgcaggtgcc agggagtctc ctctgcacac
       61 aaagcataat aatataacac aaaggaccaa tgtgcactaa taattgctaa acacacagaa
      121 agaggggcca gaacattttt atgaaagttt acttagtctg tggagatttg catacagatg
      181 gctaggtcag ggtgctgtgt atgccgcctg ggccactgtg gggtagggct gccttcaagc
      241 agcctttata agcacacacg gcttttacta tagcatagtg ctgtggagag acctcattct
      301 gcacacactg aatagtcatt caagtagctt gctttgaaat gagaaaagac cttggatggg
      361 gggaaaaaaa gcaaattctt ttctttgtga gacagaggag gagtgttggg aaagaggcca
      421 gaggacttaa agaatgtggg ttagcaacca ggaattagag gaaagtttct gtggagacac
      481 acaattagat atgtggcatt cacccctctc cttctagtgg gcaacaagag caagcacatt
      541 tcaaagggtt catcatctgc atgaaacaag gataggggga agaaaaagca ccctaatttt
      601 taaagtataa agcaaagtgt aactgtctta aaataaaaca aacccaaagg ttaagcagca
      661 agaaatttcc cttcaactaa gagcatgaag acacaaaccc tgaatttagt gcatttcctt
      721 gtgtgaatct gaatgtacat atgtgtgcat acatacgtag gtgccttgtg attattttaa
      781 atttgaaatc attgctataa
//
LOCUS       KCOD01000524             560 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 58603pyr ultra-conserved element locus
            uce-4897, sequence.
ACCESSION   KCOD01000524
VERSION     KCOD01000524.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 560)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 560)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..560
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="58603pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>560
                     /note="ultra-conserved element locus uce-4897"
BASE COUNT          186 a          123 c          115 g          136 t
ORIGIN      
        1 ctgcataaag taatcccacc ctggcatctt atgttccccc aggtgaatag actgacaaaa
       61 aaaagccaaa aaaaggaaag aaaaaatcca cccttctata tttgtaaatg ttaacaaaag
      121 ctaaacatgg ggttttgcta tggtaagaga atgccaccct ccccttctcc ataaattggg
      181 cttctaggaa gcaatccctc ccccaagaaa cggcttgtgg ggagggcaaa gcaaccagct
      241 gggttgtagg agtaataaag aaggagaatc aatagggcat gcaatggagc caaggtgctg
      301 ccatttatca cgccgcttct ctgactccaa tcattcatca tgctcaatga ggcagcaaat
      361 aggaaaatga ctatttgtat caaacacatc tgcactcatc cactgaggta ttttattccc
      421 attaactctg aaagtaaaat acgcagagtt ttctagcttc tttcagctca ggttggcaga
      481 agaaattcac agcacacagg aacacaaatg actgcatgag tttgcaaagc attttggaga
      541 ggattttagt gagtccacag
//
LOCUS       KCOD01000525             325 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 58704pyr ultra-conserved element locus
            uce-7429, sequence.
ACCESSION   KCOD01000525
VERSION     KCOD01000525.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 325)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 325)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..325
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="58704pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>325
                     /note="ultra-conserved element locus uce-7429"
BASE COUNT          128 a           59 c           67 g           71 t
ORIGIN      
        1 aatgaatagc agtgcaatgt gtacacgctt tgtccctccg gcccttcaag tagcccccat
       61 tgaatagact aagttgacac tgcatgacag tgaaacaaca taataaaaaa tacatgagcc
      121 cctgaatagg agcaggcgca taaataaata aaatgggtga ccaaaactgg ataaactgaa
      181 tgacaaaacg gtgaaagggg aacaaaaaga tatttaacac gctagattag cattagaatg
      241 caatctacaa ggcagaacaa ttgatgaata ggtttaccgg ccaagaaaga aatggactaa
      301 atgccctttg aatagatatg ctttt
//
LOCUS       KCOD01000526             748 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 58814pyr ultra-conserved element locus
            uce-6277, sequence.
ACCESSION   KCOD01000526
VERSION     KCOD01000526.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 748)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 748)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..748
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="58814pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>748
                     /note="ultra-conserved element locus uce-6277"
BASE COUNT          245 a          137 c          129 g          237 t
ORIGIN      
        1 aaaaatgcat taattcatgc aaactgagat ctgggatttt gttctattat tttaaacaag
       61 atgaaaattt ggtatgaaac ataatcctaa aagtcctagg gtccactaca atgcttggac
      121 aaaattcaaa tacattttat ccaaagtatg gcaccagctt ccatcaaaaa attatatgtt
      181 cagtcacaaa tggttattgt aaaatcttta ttaacctaag tgcatataaa aattgtgaat
      241 tcttaataca aagcattatt tgacttttaa atttcatttt aagcttgccc tgttcacttg
      301 gaatgtgatt acagagtaaa ttaaaaagta atcacatgtg aattacattt cctcatgaat
      361 gtaatgactt caggagactg attaatgtta agcagtgcct gtcctacctc atgcatacct
      421 tcccaggtga gatgtgcaag atagctgtcg tgagttgatt taatttcctt tctctggtag
      481 tccagtgaga aatgttgaac agaaaccaat tcagtgcgtt cattagatct gtatatgttc
      541 acttcttttg tccacccaag caccatctgc aaaatgctat cagtgtcagc ttatgattgt
      601 gagcaagacc ccagagactt gctcatcctg tacactgcat tcgagccagg aaagctcttt
      661 acatttagac agaaaaactc agctgctgca tggagcaaga gatacatatg tgtcagcata
      721 ttaaagcctg gtgaaaaacg ttgtcaat
//
LOCUS       KCOD01000527             454 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 58922pyr ultra-conserved element locus
            uce-2513, sequence.
ACCESSION   KCOD01000527
VERSION     KCOD01000527.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 454)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 454)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="58922pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>454
                     /note="ultra-conserved element locus uce-2513"
BASE COUNT          121 a           91 c           84 g          158 t
ORIGIN      
        1 aaagcttatt tgcctgagcc gttaagattt tttctcacag ttctgcctgt ggcgcctgtc
       61 actagcagtc aaataaggac aattttacca ttctctcctg ctgctctaat tttttttttc
      121 agtgccagta catgtatttg ttattcttta taactccctt tgaagttggg aatccaaggg
      181 gaatctaaaa ccgaccagat gtttctgctg ctggagacac agaagacagc aaggattaag
      241 tttaactgaa acttagtttt ctacaaaact ccattacagt gagaattctt cctcagttag
      301 ttttatttat tatttatatt tgcacttgcc atcatgggta ggtgatacct caagtcatct
      361 ggcccaggag aaaaatggat gatttattca agtaaatagt gtatcagcag ctgcctgcat
      421 tgatttccct tatggggttt cagttccatt acac
//
LOCUS       KCOD01000528             480 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 59028pyr ultra-conserved element locus
            uce-3606, sequence.
ACCESSION   KCOD01000528
VERSION     KCOD01000528.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 480)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 480)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..480
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="59028pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>480
                     /note="ultra-conserved element locus uce-3606"
BASE COUNT          175 a           63 c           78 g          164 t
ORIGIN      
        1 tctgtaactt tattgctatt gagaaggtgt ggaaaagggt cagtaacccc atattcttct
       61 tataatcagg aatgatcagg aaatgtagaa ctaaatatag agaaaaggga aagttagtga
      121 atatatttgc atatgcaaat tagcttaatt gatactgctt gcctctacag ggatttttca
      181 ttacaaactg gagtgctaca ttgttcagct catattgagt aatttagtaa ctaatgagac
      241 cagtttgcac taatttgcat atgataaatg agcttaattg cagtaaataa cttggaggca
      301 taattactta attttcctgt gttgcatggc ttttaagttc acgtatgaac aactcaagat
      361 aattttgcat atttaaatta gttgctttta aaattcttga acaaaaaaga acacacctta
      421 caatttgaac tgtaaaacaa ttaaaagtat aatgtacata ttttcaaata aaatttaata
//
LOCUS       KCOD01000529             809 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 59139pyr ultra-conserved element locus
            uce-6953, sequence.
ACCESSION   KCOD01000529
VERSION     KCOD01000529.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 809)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 809)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..809
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="59139pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>809
                     /note="ultra-conserved element locus uce-6953"
BASE COUNT          166 a          218 c          223 g          202 t
ORIGIN      
        1 agaagtcagt acagcactca ctgggcacag ggctgtggtg aagctgcctt agcttttcag
       61 gatccccttc tgttcctgtg agcttgctgg cctggttcca gagtggtgat tcccttttgg
      121 actattggga tgagcagccc cagagattgt ggcaggtcag gagagaaagg tgaatgtgga
      181 gagggagctg acaagtcacc accaacactg cagccggcgg cacatcccca caggagcaac
      241 gagttttcgt ttgcccctcc atgaggaccg agaagggtgg ctcaggagct gcttgtgcag
      301 ctctcagcct ttctcactct gtgtctcttc ctgttccatc tcttctcctt gtttttccag
      361 aaaagaaagt ccagttccag cgttcagtta atggtgagtg tccttcgtct tcctaaatgc
      421 cgatattgct gggcctctcc acacgttcca gcttccccca tttttggaag ttacctcggg
      481 gtagggaaga agggacagag gggttggagg gaacatcctc aaagccgtat cacccacaaa
      541 aacagggttg gtgcaggcac ttgctggcca ccagcccctg gttcttgctg atgggttctc
      601 atgccgtttc tcccagttct cctgactcag gtctgcaggc tgcatcggtc caaggagcct
      661 tggagaaaca ccttccatgc ctctgcgggg actgtatggt catgggacac cttgccaacc
      721 tacatcgggg tcttctgggt aatacacaag caaggctctg ctgggaagag ctagcagagc
      781 cattgctcta gctccgctag cagagttgc
//
LOCUS       KCOD01000530             550 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 59249pyr ultra-conserved element locus
            uce-4823, sequence.
ACCESSION   KCOD01000530
VERSION     KCOD01000530.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 550)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 550)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..550
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="59249pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>550
                     /note="ultra-conserved element locus uce-4823"
BASE COUNT          182 a           80 c          113 g          175 t
ORIGIN      
        1 acctgtgtta aaccaaaggg aggaggacag accaaagcag tttatgaagc catagttgtc
       61 agagcaaaat aatgcacgct gagtttgtct gatgtcatat agacaaacac tggtgataat
      121 attcattgta tggcttaatt ggtttgatac agagtagcaa cacaagtgta ggagatgctt
      181 gttatgtagg tcttcgtgtt gtttcaaagt ctttattatt atgacagcaa agtcttgttc
      241 attaaagttt cacaatccat tttcattagg atgaaactga ttctgtaaat gaacagttgc
      301 tctgaaaaat caaacccttg cagctatcac aggggaggta caaagtctgt attaattatc
      361 aggaatatgg tgtcgatcga agatgttaat tgccctgatg gttagttatt tggggaattg
      421 ccatgcattt catgcaggga taataaaaat gaatttttaa acaaagagat cttaaaataa
      481 tatataatct gtagagaata ccaacatcaa aggcttatct caaagctttg aattttatct
      541 ttgtggtcca
//
LOCUS       KCOD01000531             619 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 59357pyr ultra-conserved element locus
            uce-4524, sequence.
ACCESSION   KCOD01000531
VERSION     KCOD01000531.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 619)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 619)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..619
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="59357pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>619
                     /note="ultra-conserved element locus uce-4524"
BASE COUNT          148 a          120 c          157 g          194 t
ORIGIN      
        1 caataaggta tgtgggtcct ttctctgtat tggttctcaa gagtcgatcg tgtttttctt
       61 ttggagctgg cctgacgttg tgagataaag cagctcagaa aaaaatgttc tcaagcagat
      121 gcctttaaga gacagaaatc atgaatttgt tgaattgcaa ccactctggg ggtggctaca
      181 atgacttttt gacagtgaca gtaactctgc cgtgtctttt cgagcccttc tttggcccat
      241 tcactctgga aagctgctta agcgcactta agcgcattag catttggatg cttggggacc
      301 gtattgaccc tcatttggaa agtttaaatg agtgaaagat ggagcgattt gttagggctt
      361 tagaaaccag ctttagagag ctgcgggttt tccgctctgg tttgttcggg tgcttgttct
      421 aatctggtgt ggtgtttgaa gggaccagac tgatttgtga cacatgagcc caaagcctct
      481 ttttttgggc ttgacccgat tatctgatct gtgctctgaa tttcaatcac ccacgtttgg
      541 gaatggctca ttacctcact gtatggacac agatggcaaa acggtcattg ctgtttgagc
      601 agacaaagta tgaggaaac
//
LOCUS       KCOD01000532             363 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 59465pyr ultra-conserved element locus
            uce-528, sequence.
ACCESSION   KCOD01000532
VERSION     KCOD01000532.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 363)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 363)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..363
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="59465pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>363
                     /note="ultra-conserved element locus uce-528"
BASE COUNT          105 a           53 c           64 g          141 t
ORIGIN      
        1 ccttctgcct ctgtatttgg agttgttagt gcaactcatc aaagaaaact gcctaatata
       61 tatatatggt aataattttt cctcttttgt agtctgcaca agatccatga aagattgtat
      121 ttttattact atttaaacag tgattaaatt tagcctgagc agtgagcaag ggttcacatg
      181 cattctttta tactgctgga ttttgttgtg catcatttaa aacattttgt atgtttcttc
      241 ttatctgtgt atacagtatg ttcttaaata atgttcaatt gtcaggagaa ctgtgagaaa
      301 taaactatgt ggatacagtc tgtttatata tagaatgctt gctgtgactt ccaatcaaga
      361 tgg
//
LOCUS       KCOD01000533             543 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 59577pyr ultra-conserved element locus
            uce-1200, sequence.
ACCESSION   KCOD01000533
VERSION     KCOD01000533.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 543)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 543)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..543
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="59577pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>543
                     /note="ultra-conserved element locus uce-1200"
BASE COUNT          150 a          128 c          109 g          156 t
ORIGIN      
        1 gcataaattc actgatatac caggctttca ttaagtttat tgtccgaatt cttcaacaag
       61 atttcgggca gggcttttga tgcctttcat gtggttttta ctgtatccct ctggatgtag
      121 ttctgaagaa acatttctcc tgccaaaata cacacacagg ctgggattaa aagggctgaa
      181 acctaccacc aagttcttac cgccctccca ccatcattag actaaatccg ccgtcattcc
      241 agattcattt ttcccttatt catctgtcca actaattcct gctgcattca ccgggcttac
      301 atcttaatct tttctgttac atagagaata cataatgaaa agctgcattt tctgggtaca
      361 tgcacacatt tggagcggat gaaccatatg tgaagtgaca tacaatgctg aatgggggct
      421 gaatggtgtc cagtgctaaa aacagtgcaa gtccagaaag caggagaaca agagccctgt
      481 gctgggcttg cctcgctcga acaccagggg attcgccgct aaaacatggg tataatttca
      541 ctg
//
LOCUS       KCOD01000534             622 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 59689pyr ultra-conserved element locus
            uce-3082, sequence.
ACCESSION   KCOD01000534
VERSION     KCOD01000534.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 622)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 622)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="59689pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>622
                     /note="ultra-conserved element locus uce-3082"
BASE COUNT          197 a          136 c          135 g          154 t
ORIGIN      
        1 ttgctgcaca atggcacgat gacattgggt gttttccagt aaatttttcg ctgagagtcg
       61 caagcagtgg aaacacccga gaaagcgcgt cagcattaga tgcacgccta agaagaataa
      121 aaagaaaaga gcttttcgca ccagaatttt ttcttgaaag caccgggagt cacctgaccg
      181 agcccggagc ctccaggata acacagcacc agcctgcaat gggaaagaaa ttaagcaggg
      241 ctgcctccgc ctcgcacacg ccttttagcc tgtcgacgcg ttgcctgtcc gtatccctca
      301 cagcgcatct gtagagccat taaattggat aatccctctg gcctttgata catttctgga
      361 catgattatt tcattactcg cagtatatca gtaggatcat aataaaaagg acttctgaca
      421 acctgccaag agttttgtgg ccttgtaaac acaaaagtgc tctaataaaa ttttattaag
      481 tgttaaaaag tcataaaaag tgaaataaca taaactacaa aatttactgt cctcagcaaa
      541 tgctgaaaat atcgtccata gtaaaattaa attagcatgt aatagcgcgg cagcgtggag
      601 tgggcttgaa agaggatccg gg
//
LOCUS       KCOD01000535             593 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 59797pyr ultra-conserved element locus
            uce-2637, sequence.
ACCESSION   KCOD01000535
VERSION     KCOD01000535.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 593)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="59797pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>593
                     /note="ultra-conserved element locus uce-2637"
BASE COUNT          217 a           95 c           90 g          191 t
ORIGIN      
        1 aggaaagaag catgtagcta ctatttctcc cacattggaa agtttgtgat ttctatacta
       61 tataatgcag agtattagct ttaacaatct aaatgcatct aagaatgatc aggaagccaa
      121 ttgatttttg aatagcattg agtgggtcag catgaaaact tgcttattca ctttagcacg
      181 cgcttcacag tatatgtact gtactatact gaaaatttta taactacaat ttaaaagaag
      241 aagaaccaaa accaactgca aatatagtgt acaactatgt tatgcataga acattgcttt
      301 ttctaagggg aagcgtatga gcatctcagt ttatacaaaa agcaggacgg tagttgtcag
      361 tgcatcctgg tgaaaaaccc tcagcttaaa aatttaatta taagctagat gctaatcaga
      421 aaatattctt tttccttaaa tttcttcaat atatccccaa acagtgattt aagcatcata
      481 caaagttaaa cttcaatagc atacaggtat ttatggtttt catatgaaaa atgtaaggaa
      541 atttgctcaa aacatatgtt tatacttttt ttaccacaaa catatttata aac
//
LOCUS       KCOD01000536             753 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 59907pyr ultra-conserved element locus
            uce-81, sequence.
ACCESSION   KCOD01000536
VERSION     KCOD01000536.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 753)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 753)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="59907pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>753
                     /note="ultra-conserved element locus uce-81"
BASE COUNT          230 a          186 c          184 g          153 t
ORIGIN      
        1 ccaaaagggc ggtgcagtcc tcaggaggca aacatggtag ggtgcagccc tatggagatg
       61 atcctgcttc tttgtacctt gcaggatggg agctctgctg cagccacact aactcctcac
      121 tcctctccgc aaagccacgg caggagacaa taatgcacgg ccacggctcc gagccactcc
      181 aaggaaggat cctacctcac acaaggctgt ccaagaactt gacaggactc tgtttgaaaa
      241 agatgttgaa agaaatgatc tctttaagtg caatgggaga tatttgtctc tgatttaccc
      301 ttggcttttt gctctggttc aggtaggagc ggtgtgggat ggctggcaga tctgagagca
      361 tggcacgccc cagcgggcaa agcgagcagt gcggaggaag gcgcgagtca gtttggagtg
      421 ctccccattt atcaaactca cgcagcccgc cagcagagcg agtctttcca tcattacagc
      481 tctcaaaatc cgattcatac cactaatcct gccttcattc tcccagatta ataacatctc
      541 tttcaacctt cacagtgtga taaatagaca aagagagaac aaaaggagaa acagaagtga
      601 gagaaagcca gagcaactcc acataataaa gagaaccaag aaaggggaaa ggaaaaaaaa
      661 gggaaaagaa aagggaaaga aaggagccgg cacacttgac tctgccattt actttagcag
      721 attctcccca agagcaccct gccatcctta aag
//
LOCUS       KCOD01000537             717 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 60006pyr ultra-conserved element locus
            uce-1190, sequence.
ACCESSION   KCOD01000537
VERSION     KCOD01000537.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 717)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 717)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..717
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="60006pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>717
                     /note="ultra-conserved element locus uce-1190"
BASE COUNT          248 a          131 c          131 g          207 t
ORIGIN      
        1 acaaacaaac agaaaacaaa agcagaaaac aaattaagaa acaaaatcaa agacattagc
       61 ttgcaaactt aggtaattta gaattctaga aacaatccaa tggctacttt aattaacaca
      121 tcctctctgc aatcagctga aggcgtacag aaatatatac ttttacacgg cttaacacgg
      181 ccaacataaa atagataata taatctgaaa gataaataga gtttaatacc ttagtaattt
      241 gtacttagaa acaaaggcct tggtgcagtc ttgttgtgtg cacttgtagg gcctctctcc
      301 tgtgtgagag tatgagtgaa cctttaattt ctcaacactg ttaaaggcct tgtcacacag
      361 ttggcaagga aagttttttc ttggtttggt ttcaccacgc ttacgtttcc ctgaagggac
      421 tttctgggta tctcttactt ctgacaaatc accaggaatg acagtggcca tcgcagccta
      481 aaccaggcct tcttgttgga cacttgggaa ttgcccaact ccactaaatg atttagcttt
      541 agatggcttc tcaagtttca tgtggtcgta aaagaaagca aaaggggact ggaaaaaaaa
      601 aataagaaac aactagtttg taactaaact tagattttga agtttacttg ctatgtgatg
      661 cttctgaata aaacttaaaa ataaagttag gttcagctgg tctaatgtaa tacctac
//
LOCUS       KCOD01000538             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 60114pyr ultra-conserved element locus
            uce-1288, sequence.
ACCESSION   KCOD01000538
VERSION     KCOD01000538.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="60114pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-1288"
BASE COUNT          197 a          114 c          110 g          213 t
ORIGIN      
        1 tcttgtttgt gtgaaccagc ttgaaagtga atggcaggag atctaggtat ctagaattat
       61 tcagctttca aaatctccta gctaaaaata ggaaataatg gcaaacctta aggatacaaa
      121 aaaaaagatg gtatcattct gctagtgcac cttgcttaac ttctgattta tcttttaaaa
      181 catttctttt tattagcatc catatccttc agaggagcag aagaaacagt tagcccaaga
      241 cacgggactt acaattctac aagtaaacaa ctggtaagtg accctacaat caatatcttt
      301 actcccatgg ctaaactgca atttctaaat aattgttttc tttttcattt ctgtaccaaa
      361 tgcaattgac taggaaaatt cctgtgttca ttcttcttaa gtatgaaaat agcacttagg
      421 gaatggtaaa gctaacctag gtaaattgtt tttcaagatc attctctctc cacttgcaaa
      481 gtgtccaacc gagccttgga ttctgttcag gtctttccca ttgaaaacac ctgaaaagcc
      541 acatagtttt gcacagtcat agtatttagg ttatcagtgt ggtaatggtt ggttttgttt
      601 aggttttgag tggtaattta gctacaagca tttt
//
LOCUS       KCOD01000539             716 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 60222pyr ultra-conserved element locus
            uce-7823, sequence.
ACCESSION   KCOD01000539
VERSION     KCOD01000539.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 716)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="60222pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>716
                     /note="ultra-conserved element locus uce-7823"
BASE COUNT          244 a          130 c          123 g          219 t
ORIGIN      
        1 acttttcagt ctaagatggt tactgcatca cctccagtca gaataaaaca tctctgttgt
       61 gtatcacaat tcatcaccca gcggagctag aattccctgt tcgctctgaa attgtggtct
      121 cctacatgac agtaaaattt gtgaagtccc atctccaggt tgccctgaca tttatatttt
      181 agccagaaag aaacattaag aaggcctaca gactaggaag acaattgaaa aacctctaag
      241 aaaggaaata tcttattaat tcattaagtc aaactgcttg tatctacact tgtatgacta
      301 gaattatggt tcattaactt catttcttta tatgagttaa ttagctcaga ggaggccaga
      361 aattaattac cagcttatat agtttgtgca gaatggcatt ctgtttattt agtttctcct
      421 attaactttt aatctcttca aacaataaaa gaggtaatta gtattttata aacaaaaatg
      481 aatgcaacaa aggcaaataa tttgccaaat agtgaggctc ctgtgtggaa cctgatagtt
      541 gtgtggttca agttacagac cttttcactg ttaagtataa gcaaaaattg aaaatatagg
      601 tagtcttcag gcagggccat gcaatctatc aagaaagaag agctacctac taatacctca
      661 cggagcagaa aaacgagcct taaaaagttt ccagctgttt gaaaataatt gcccat
//
LOCUS       KCOD01000540             695 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 60332pyr ultra-conserved element locus
            uce-6568, sequence.
ACCESSION   KCOD01000540
VERSION     KCOD01000540.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 695)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 695)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..695
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="60332pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>695
                     /note="ultra-conserved element locus uce-6568"
BASE COUNT          220 a          134 c          133 g          208 t
ORIGIN      
        1 aagcgaaaca atcttgttta atcccgtgta ccctaaagta gaagtgcagc cacaaactga
       61 attaaagtag tggtggtgca ctgctatagt gaaaagaatt tacgtaattt aacatgctca
      121 actacttggg aaaattttgg tcaggttagt tttcattatt gttaagatca gacgactgag
      181 cctatagcaa aattaaacaa ttggttgaag tcttttgatg acaatagcat gcccttttta
      241 ccacgaaact gtggaaatgc tctgcgcgtc ttcccagcac ccggagtcat ccacccccat
      301 cttataattc aacctgcaaa cagattaagc agctgagttt gtggaaagtg tgtttacttt
      361 gagctaagaa cccttgtgtg acactataga gattcctctg acacctctgg gagagctaca
      421 cagacagttc gtactcatca gcagggaaac cgggctgaga attccctatt tctttgtaac
      481 ctcaactgct tcatacaaat cagtgtttgg caattaggca ggaactcatt tgttagctta
      541 gcattttatt ttgaagatgt aggatgttct acatttcaaa aaagaactga caatttataa
      601 acctgtcaac agttcttggt attaattaca gtagtattaa ttattagctc tgccacaaga
      661 ggatgaaaat gtgacactaa aattcataga ctaaa
//
LOCUS       KCOD01000541             410 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 60440pyr ultra-conserved element locus
            uce-955, sequence.
ACCESSION   KCOD01000541
VERSION     KCOD01000541.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 410)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 410)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..410
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="60440pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>410
                     /note="ultra-conserved element locus uce-955"
BASE COUNT          145 a           66 c           75 g          124 t
ORIGIN      
        1 taaaaaatat aataaaagaa gccacactct caccatttga aaacgatact tttgattgct
       61 ttcctaactg tcatggacaa ggacatgaca cagattattt ctatgcacat attagttaaa
      121 aaatccagct gactttagag tttgtcaata tcaggagagg taattaactg ttttgaaaga
      181 atccgtaatg tgggactttg taatggcatc atttggagtc aagtcacaga tgcggcgtgt
      241 ggagccatac tgtaattagg aagaaatgct gtacaggttt tctactaatt agcaaattat
      301 gctgaaaata gcatcaagct aattaacagt tattatggca tttttgaaag tatgacttta
      361 attagcaaag tcctgacgca tgcaatttca aacttgtcca gaaaaacaca
//
LOCUS       KCOD01000542             317 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 60540pyr ultra-conserved element locus
            uce-75, sequence.
ACCESSION   KCOD01000542
VERSION     KCOD01000542.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 317)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 317)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..317
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="60540pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>317
                     /note="ultra-conserved element locus uce-75"
BASE COUNT          123 a           52 c           42 g          100 t
ORIGIN      
        1 aaggaaagaa aattctgcct aaaaatgtcc ttccagggag gagaaggccc cacaaaacag
       61 atacatgggg ttggaagttt aatacagaaa atctatttga tatttattaa acttagtttc
      121 tccagttaca gttttgcatt gtacaaagca ttttaatgac acagtagtta aaaagatctt
      181 tacaaattga aatgtgatac ccttttctcc aaatatttta attgccataa atttgtttaa
      241 aaatacacat taaacgcatg tttcagacac taaactttct ataatctcaa taccacaaaa
      301 tacatagaat atactat
//
LOCUS       KCOD01000543             694 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 60649pyr ultra-conserved element locus
            uce-6209, sequence.
ACCESSION   KCOD01000543
VERSION     KCOD01000543.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 694)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 694)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..694
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="60649pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>694
                     /note="ultra-conserved element locus uce-6209"
BASE COUNT          184 a          167 c          150 g          193 t
ORIGIN      
        1 ttcttaaccc agctgacttg cctagtttgt gccttgtttt cttgcctttc ctcagctgtc
       61 actacatctc gccccctgta agcagctcag tctcattaaa agcaatgtgg tgaaactagc
      121 cacatcatta tattcactta gacggggctc ttgtagccag cacttactgt tcataatagc
      181 tgccacttcg ggtttgtgaa attggcacct tcctcgtggt ttgttccgtg tcttactttg
      241 aaatttacat gtcttcagaa caaataaaat tcacaacaac aaactaatta atggattcca
      301 gttttgacag ctacaagaag acagatgaga aagtaacatg cttctggcag cgtgttatca
      361 attgggaggc accagtgcat cgcctctatg tggtacagtg agctggaacc gacactgaca
      421 gatgacacag cccttgacag tgaagcctgt atgagctgac agctccactt gcactcaggc
      481 aggtccacgc tcggcactgg aactgaacca gcttgatgtg cagaatatgc ttgcttttat
      541 cccccggctg tacagtgggc aggcagagca gcactgtcag gtggagccca ggacttacct
      601 tagaaagtta aaactgtgac aagtgttaag attttaccag taaaaataaa tgaaaccagt
      661 tgacaagtgt ttctcttcca gccagtgcct tgct
//
LOCUS       KCOD01000544             441 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 60760pyr ultra-conserved element locus
            uce-5948, sequence.
ACCESSION   KCOD01000544
VERSION     KCOD01000544.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 441)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 441)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..441
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="60760pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>441
                     /note="ultra-conserved element locus uce-5948"
BASE COUNT          138 a           67 c          109 g          127 t
ORIGIN      
        1 tttttgaatt tggacagact taaagaagtg gcataaaatt tgaagggcac ccaatcaatc
       61 tgttgtccta gctgcatgaa attgtatttc cttgccactt catatcttat ttgcagcagc
      121 tgggctgtaa gtcattggtg ataacattct ttattatgca gccgtgttta tgaactgtgc
      181 ctggaaagag atgatagaaa tatgcagcaa tatgcaaagg ggggaggggg aataaatgct
      241 tgttgctagg gcaaccatgg ggctattttg ggcatcaaat tttgcagatg atgaaaagca
      301 ttttcatgtg atggttggtc tctctgggaa gagaagggga gagagggcac acaataaacg
      361 aggagataat attcaagaag gcagtcattt atatataaat acatctatag tttcagctgc
      421 actggaaacg cattaaaacc a
//
LOCUS       KCOD01000545             601 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 60868pyr ultra-conserved element locus
            uce-3902, sequence.
ACCESSION   KCOD01000545
VERSION     KCOD01000545.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 601)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="60868pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>601
                     /note="ultra-conserved element locus uce-3902"
BASE COUNT          184 a          115 c          120 g          182 t
ORIGIN      
        1 tttcatgctg ctttccactc tcacacattg cacaccctat cgttccattt cagatcttat
       61 atccaacaag cttttgctga ctatataacc ttcactaacc tgaaattcct gagtagtccc
      121 aggagctcaa tgcatcttgg aataaaattt ttgtaatgtc atttaagggt attcctaatc
      181 cagaattatt gaggaggcct gggtcatggg aattgagttt gacacttgac aaatacgtgg
      241 ctttgtgtaa atggacaggc cactgaaata actgcctttg gatgtcacat gaagagaaat
      301 taattcttta ttaacttccg caatgataat ctgataaact catttggtct actagtttca
      361 gcacttaaag aactcagtcg attggatgca aatagacctt ctggagcagt gtctctgtgg
      421 tgtgcaaagg gacatcagtg tgaaaagtca ggcctggcat gtcaggacat tcacgtccag
      481 atcgctgctt agtgtgagag agacaggcac agcagaagga caaatagcag ggactaaaaa
      541 tactctatta ggaaagaaaa ggtttttatt ttttaaacaa attttctata acttgaattc
      601 a
//
LOCUS       KCOD01000546             533 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 60976pyr ultra-conserved element locus
            uce-7292, sequence.
ACCESSION   KCOD01000546
VERSION     KCOD01000546.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 533)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 533)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..533
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="60976pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>533
                     /note="ultra-conserved element locus uce-7292"
BASE COUNT          176 a          107 c           91 g          159 t
ORIGIN      
        1 ccaattacta ctgtacttaa cctaatgaaa ttttattctg cgggattctc aaacaaaata
       61 taagattaaa aacttcgaga caaagaaact cctagagaaa agatgcaaat aaaattactg
      121 ttttttattt gcaagtagga gaaacaaaag catggaacat agcatctgtc atatcagaat
      181 ataaaaagat gatcctggca ccaaatgaaa aagctctaat tcatttgcaa atcaagcctg
      241 ccagttctat ttcaagctgg cggtaactgt caagagttaa caagataatc actttcaatc
      301 ctgccttcaa tggtacatta cactgttatt ccattcaata aggcccttct ttggggcact
      361 ggatgaatgg ttttcatttc gaactcacac aaaaagttgc tccatggggc ttaagaaaga
      421 aatcccttta cgggcattta tctgccggca cttgctttta ggcaaaatga gatatttgga
      481 tacattggtg tccattcact tcctctattc cttcaggccc tcagtctggt gat
//
LOCUS       KCOD01000547             674 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 61085pyr ultra-conserved element locus
            uce-1579, sequence.
ACCESSION   KCOD01000547
VERSION     KCOD01000547.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 674)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="61085pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>674
                     /note="ultra-conserved element locus uce-1579"
BASE COUNT          167 a          115 c          138 g          254 t
ORIGIN      
        1 ttaacagatc tgtcagaaca aagcaaatat gtcatattgg cagctgttac ttatgagtac
       61 tttttcttta ttgcattttg ttttgtaata attgagaagc ttttatgttg agctctgcat
      121 aaatggtagt gagtgggagg gtatgggcat gctttctatt attctgcccc tcatgcatgt
      181 ctcctttttt cgtctttcca gaaccacaca ttgagccagc acgcacagtg agccactggc
      241 actacaggac acctctctgc agaagacttg acggtggcac agtggggagg accatttgaa
      301 cattacatcc aatcaaagtg tcatttgcaa cccagatgta aaactctaat gatttggcca
      361 tgaggcgctg ctattataag cagctggaaa tgaatattaa tggaagagat taaaagtatt
      421 ccatgctcag tattttttat tgtcctgctt cagctagtgt actttagagc ttctgcttct
      481 gactgaattt atagtgttag ataaatccgc tttgatgctg ttgccctttg ttgcttcttg
      541 tattatattg atagttaaag actaggtgtg atttttttct tttttgttaa ctgcttttta
      601 attgcaattt taggtaactg tgcattgtgg tgtgattgct tggctattgt ctgaatattt
      661 ctttttaatt tttt
//
LOCUS       KCOD01000548             577 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 61194pyr ultra-conserved element locus
            uce-4532, sequence.
ACCESSION   KCOD01000548
VERSION     KCOD01000548.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 577)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 577)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..577
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="61194pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>577
                     /note="ultra-conserved element locus uce-4532"
BASE COUNT          183 a          121 c          114 g          159 t
ORIGIN      
        1 actgaacact gctgcaagtt ctgcagatag tattttaatt taattttctt taatgttata
       61 aatgccaagc aaatcgttaa aagaaatgtc agctctatca gtggcagctg ctgttactac
      121 gaaaaaggag gggaagtgta ggaacagggc agccagcaaa ccccacagcg gtctgcaaag
      181 tcactagtgg gaaaacaaca aaggcctttc catgcaacta acacagatgt gcccatagcc
      241 aaactgtcag aagcagttag gatgacagct actcacagtt cattatttcc ttctcacagg
      301 tcactgggtg acaagctggg tcaccatgct ttgtcggctg ctacaaactt cccccccccc
      361 agttctgatg ccagttaaat aaaggtataa tgtttattat accttcattt tcagatggat
      421 atgtgacatt tcctctcagt gacgagcagg aactggattt gtatcagcag atacatctat
      481 tagaataatt ttgtcaagat gtgactaaag cagataatga aagctaattt ctcaccaaat
      541 tgaagtttta acctttagaa cacttacatg gcagata
//
LOCUS       KCOD01000549             695 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 61304pyr ultra-conserved element locus
            uce-5190, sequence.
ACCESSION   KCOD01000549
VERSION     KCOD01000549.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 695)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 695)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..695
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="61304pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>695
                     /note="ultra-conserved element locus uce-5190"
BASE COUNT          179 a          157 c          149 g          210 t
ORIGIN      
        1 tgcattagct tggctggttt atcttaagca tactcagtag acttgcctca gtttttctca
       61 agctattgtt cttttttaca ccgcgtttgc acactgcagt gcatctaggg aatttcagca
      121 gtcggaatat acatgaaaag agacccgctc tactttcata aggtccctgg atgaattgga
      181 cgaaacctca aggccccatg gtggagccag agccgcattc atattccttg ccatcaccac
      241 acatatgata gcatgaagcc cagaccaatc gaaaacttga cagtaagcct tttgattttg
      301 tggggaagcc ttcatcaagc tgagagaggg aagggaatat agcccaaact ggacttcata
      361 ctgtggcaag tttgaaatcc cagcccaacc acagagctgc ttgattggaa tagttggaaa
      421 ctgtgtccag gaattcggca gcaagaactt ggctttcagt tactcctgcc tttttaaagg
      481 aaaattcgcc atacaggtct cttagaagcc ttatttattt catcaggatt ttaaatatgt
      541 gcattctcgc gtgtgtagtg tttgctgctg tacagttctg ttccacagca gctttttttc
      601 ttaccctcgt ggtggaacac tcttggctga agctgccaca ctttgatatt gtcttctagg
      661 ctgtctcatt atttggtcct taaagacaca gaaag
//
LOCUS       KCOD01000550             491 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 61411pyr ultra-conserved element locus
            uce-6592, sequence.
ACCESSION   KCOD01000550
VERSION     KCOD01000550.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 491)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 491)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="61411pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>491
                     /note="ultra-conserved element locus uce-6592"
BASE COUNT          166 a           83 c           89 g          153 t
ORIGIN      
        1 tgggtaaaca taaacaaaat gaaatgcctt actctgaaac aataaaaaat cttagaactt
       61 ttccagcaag acctgtctca ttgtgtgtag aggggcacgg gggaacataa aacatttagt
      121 aaacaaaaca taaagcatct ttaacatgaa taatcagaat gcttttaaat tgttttgttg
      181 caactataaa tcactataat cagtgcaatc actcagctct gacatccatt agccgcttgg
      241 ttacagcaaa ttaacaaaga agagagaaag tgattcatta tctcattcct gttaatgact
      301 atcagatgca ttgcttaatt aggggatggc cattgtagta ggaagaaggt catatgcctt
      361 tccacaaatc tttttgctcc aagtttaagt cgtccataat agtgcttgtg ttgaatatgg
      421 taagttattg acacctgcca tcattttgtg gatattagta gttaccagtt gccaaactta
      481 gtatttgtaa g
//
LOCUS       KCOD01000551             629 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 61520pyr ultra-conserved element locus
            uce-5185, sequence.
ACCESSION   KCOD01000551
VERSION     KCOD01000551.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 629)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 629)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..629
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="61520pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>629
                     /note="ultra-conserved element locus uce-5185"
BASE COUNT          202 a          134 c          109 g          184 t
ORIGIN      
        1 ctcccttcta ggaactttac ctactgacat taccactatt ctctatgttt ggtttggctt
       61 gcaacaaata tatttacctt tttaggtata agtaaagaaa caaagttagc tattagataa
      121 cagttcttgc tgccaaaagc cataatctga cacagattga gcctggtaca gtagtcaatt
      181 aatggctcag tgctcataca ataatgacct actaacctga cggtgtgttg ctctcacatt
      241 ttgctgtccc ctgggatgct actgtcactg tgttatctat tgcctgcttc cctatcaaag
      301 aaaataagca gagctgaaat gtatgtacgc atcaagctct gtagttcatt gcacaccaac
      361 cccagcaact ggaggaacaa tagatttata agtttatcct acattaaacc aaacatgcct
      421 gactgcactg taaattacta aataataaac caggtggtgt aagatcctga cttggacaga
      481 atataaaaat ctatcaacct gtaaaataca ataaccataa acgtgctatg tagctgatgg
      541 ctcaggtaaa ccatccacct ccagcaacag aggttttgct ggagtaaatt gcaacaaaag
      601 gtttactaaa tttaggttgc gagcacttt
//
LOCUS       KCOD01000552             346 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 61627pyr ultra-conserved element locus
            uce-7136, sequence.
ACCESSION   KCOD01000552
VERSION     KCOD01000552.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 346)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 346)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..346
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="61627pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>346
                     /note="ultra-conserved element locus uce-7136"
BASE COUNT           95 a           90 c           57 g          104 t
ORIGIN      
        1 cctgggcaca caaagccagg gctgtaattc aatgctcaat ttacccttgt ctcagtggag
       61 accccgctaa ttgatagaaa ttaagccatt aatcaaggca ccagccatca ttcaacccgg
      121 ggaagatgaa tccaaacttt catcataacc accttcccca ttttagtgtt cattagcatt
      181 aatttttaat gcaattatgc tcttctttta cgctgagctc ataaattact tttgttgctc
      241 gctggccttg taaaatccaa ggtaatgctt tgtgctctga tcttaaaggc aattactgcc
      301 tgcttcatac ctctatccca gaggtacaga ctcacggatc ccacac
//
LOCUS       KCOD01000553             686 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 61733pyr ultra-conserved element locus
            uce-4688, sequence.
ACCESSION   KCOD01000553
VERSION     KCOD01000553.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 686)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="61733pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>686
                     /note="ultra-conserved element locus uce-4688"
BASE COUNT          219 a          111 c          106 g          250 t
ORIGIN      
        1 cacggaaatt actaactaat tgaactactg gtcttttatt gtttcagcaa gcaggacaga
       61 gtgtcattcc tttatctctt aaattcatta ttatcgcata tcgcaatttt cgagcaatat
      121 atgcttccta atagattaat acataaataa ccttcccagt aatgccactg tgggcaaaag
      181 tgtttgaaat aaaaccacct gttttaatta gtattcatat tcatgctgtt aaaaaatggt
      241 aatcctcttg cagttatatg acatttttaa agctttgaat ttccatctgt atcttatatt
      301 atgatgtttc aggattgtcg tgagttaatt atgttaactt tggaaacatt gcttgcattt
      361 agaatgaaaa acttcagctt gaatagccag gaaagcagat gctatctttc ttgtcaactg
      421 ctttgttgtg tgatgccttg aaactttttt ataagattct gtctccaaaa ggaagtataa
      481 atctccattt atttgaaatg ttgctctaat ctaatcaata ttttaatata tttctcacgg
      541 gagggacctg aatgcgtctc aaggaaccaa agacatgaaa atctcttatt ttatgttgaa
      601 atcctcttgt tattacaagt ccattcacaa taatttgtag aacaggaaaa atccatgtac
      661 tataaagttc taaaattgtt tggaag
//
LOCUS       KCOD01000554             593 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 61844pyr ultra-conserved element locus
            uce-7518, sequence.
ACCESSION   KCOD01000554
VERSION     KCOD01000554.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 593)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="61844pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>593
                     /note="ultra-conserved element locus uce-7518"
BASE COUNT          211 a          105 c           99 g          178 t
ORIGIN      
        1 ttagcacctc agtgaactcg agcactggtt gtgagaaatg agtgcatgaa gtgtgaccac
       61 tcaacaggta ctgtaccatt ccatgaggag actgtgtctt cttgagcatt atgtgcctgg
      121 tcatatttga gactgttcta aacaatggct acagttaaac aaagaaattt aaagcaatcg
      181 ttcataaaga ttgcatcaac atcagttagc agaggaagat caaactttat tgaaactgct
      241 tgcatacaaa atatattgca ctataaccaa acaaatgtca acataaaatc caatctgttg
      301 tagctaatat gtacagagaa tattgcccaa gagcagttac attacaaggt cagtctacct
      361 tggttaatta tctacagtat tttaaaccaa acagcttaca gatgatgtgt gcaaggtacc
      421 aatttctgtt ttcaaatact atacattccc aaaataaata actagaaatc aacattaatg
      481 tttggcaata ctttttaaga catttttata tttgttaaat cctgtgcagt tctttgccag
      541 ttttatatgc tcacctgtat gcaaggaaga aagcaaagaa aaaaatacat cag
//
LOCUS       KCOD01000555             706 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 61954pyr ultra-conserved element locus
            uce-5914, sequence.
ACCESSION   KCOD01000555
VERSION     KCOD01000555.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 706)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 706)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..706
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="61954pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>706
                     /note="ultra-conserved element locus uce-5914"
BASE COUNT          235 a          144 c          111 g          216 t
ORIGIN      
        1 tgtatttcag cacaaactgt atctttaaaa taatgacagt ttctctcatc ttttctaaag
       61 cactttaaaa ctacagccca gaaatacatg gacagagaga aattaaagca acggaagctg
      121 aaatatgctg cttaggaatc caaagtttgt ttacaccatt agaaagcact caaatatata
      181 tccccataaa tgacaaggtc ccagcagcaa attaacagga acaattttcc catctcagga
      241 gctgtcaaga tgggctctgt tagccaattt atcttactct agcacatctc tggtgcttgt
      301 caatcaatat gtgaaacatt tggtgttgat tgccattttt ctatccactt ccttttgcct
      361 cttgtaccag gcaatttact gcaagtcaat caaggttgaa gcagaccttg tttaaataaa
      421 acactgttga gttcttttca caccaacaat ttcaaaaaca gaatgagctg tagctcttca
      481 catttacatt tatactactt tttctcccaa atgccatgct caagctataa gtcataacta
      541 aactcagcca aaggcttatg gagaaatcag tcaaggaaga tgaactgctt ttgctgtcat
      601 tcaggctatc aatggagaca gaggacatta aaaagtactt aagtaatctg ggattgaaaa
      661 acaacttctt gtctgaattt cttaactctg gataattact tcaaat
//
LOCUS       KCOD01000556             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 62063pyr ultra-conserved element locus
            uce-7463, sequence.
ACCESSION   KCOD01000556
VERSION     KCOD01000556.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="62063pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-7463"
BASE COUNT          223 a          114 c           95 g          208 t
ORIGIN      
        1 gttacaaaat taagtgagga tattctgtca cctattcact tctccgttcg tgaagccaca
       61 cataacacaa agttaattaa agcgtctatt ctgaaaggaa tgttccattt ggtaaattta
      121 gaaacagctg gttagtttta tccattactt ttgtgctaac atcagttgag ctcattcaac
      181 tctctctttt tatgaagctg tccttcctat gctacctgat agctactaat tgctgcaact
      241 acatttctga attgcaaatt ttctgcactg ataaaaactt tgattgcctg tcagctacac
      301 ataaggaaaa gatcaccagt gctaaatgag gtgttccacg cttggataat aatgcctaat
      361 gaattattca aaaaagaatg cttgaatgaa gcaaacaatt tgaagggtta ctagcagccg
      421 taacagttca acagccaaaa gaacaaaagt atcatcctga aaattacact aatgattaaa
      481 aaatgcgtat taattctaca tttggagaaa aaagaaatgc caatctgatt ttaaaggtta
      541 atcattattt tttcactaat gctctaatct ctgggaaaaa caccctttac caatattttg
      601 ggacatataa tattatgaca taacatattt atataatttt
//
LOCUS       KCOD01000557             589 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 62173pyr ultra-conserved element locus
            uce-1564, sequence.
ACCESSION   KCOD01000557
VERSION     KCOD01000557.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 589)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 589)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..589
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="62173pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>589
                     /note="ultra-conserved element locus uce-1564"
BASE COUNT          177 a          119 c          101 g          192 t
ORIGIN      
        1 aaaaatttca tatcagcaaa tggcataatg tcatatttat attaattgga tattctgggt
       61 ttactgctcg ctccattggc accacgtaat atacaatcta aaatccatgt ttgtgcacag
      121 ggtataattt aatgcatgag atacagaaga ccttccagct tttaaacaac agaggggaaa
      181 cattttccat gctcagtttc tgtgctattg gaacatttgt tttttattct gaatatttca
      241 gcacatctat ttacctggca ctatatttag taccacagta ccaagatggc atatataaag
      301 attcaattgc aattcccatc tgatgtccct tccctctcct ttttaccccc ttttttatgt
      361 ccgcactctg aattcagcac aaagttggtg tgtttaattt aaaaagaagt aaaacgcgcc
      421 aggagacgcc tcagaccact gcaaatcacc tgctttatag aggcagtaaa attgtgtatc
      481 ggattaaaag tgatgctgat ctgaaattta tgataacttt taatggcatt ataccctgtg
      541 cgctccatca ccggatcgtt tggatgcaca gtgcagcaag atgaaattt
//
LOCUS       KCOD01000558             586 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 62286pyr ultra-conserved element locus
            uce-1648, sequence.
ACCESSION   KCOD01000558
VERSION     KCOD01000558.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 586)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 586)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..586
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="62286pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>586
                     /note="ultra-conserved element locus uce-1648"
BASE COUNT          182 a          111 c          101 g          192 t
ORIGIN      
        1 ggtggtgctg aataagcatg cttatatgga atttctcttt gaaaagacca ctagttaggc
       61 cctataacac ttcagttgat atttccacag tgcaaacacg atagtggaaa ttaagttgcc
      121 ccagcaaatt cagtttagga gaaatttgtt atgaataaaa tgctgctgct ggccttagaa
      181 cattgaattt atccaccaaa taatatctta gaaataccac ttcagaagaa atcagctcta
      241 aataattgat aaatttggtt tgtttagaaa ccttttgacc cctgtaatag aaagtaaaaa
      301 cacatttcag ttattaaagt cacatatatt ccctctggta ggggaagctt ttaattttaa
      361 gctggtctct gttggggcca tttgataaag cttggaaaaa ccttttcaac tgctgctggt
      421 ggatttgggt cagcttccct tgggaaaatg gcaaaagata aatttctagc ttttcataac
      481 acataagaaa acttcagaga ttttaaacat caagaactat tggaactgaa agacacagtt
      541 tctcttttgt ttctccccct cctcctcctg ctccttcttc tctttt
//
LOCUS       KCOD01000559             290 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 62392pyr ultra-conserved element locus
            uce-3914, sequence.
ACCESSION   KCOD01000559
VERSION     KCOD01000559.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 290)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 290)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..290
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="62392pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>290
                     /note="ultra-conserved element locus uce-3914"
BASE COUNT          117 a           47 c           54 g           72 t
ORIGIN      
        1 ttcagccaag tcagtcccag tgttttaggc catgcattga agaggggaaa gctgatcaac
       61 ccgtgtgtaa tataaaaatc aagactaaaa acaggcatca tttaatgtat tttaatagca
      121 aacttacagg aacagcacag aagacagaca acattaaaaa catgtacttg catgtaggac
      181 aactcagtta gaaaagtata gtgaatggat ggaatctact gtatgataaa aatgctacaa
      241 acagccattg ataagaaatt tacttgttta aaaaaatcca aatgctggca
//
LOCUS       KCOD01000560             686 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 62502pyr ultra-conserved element locus
            uce-2279, sequence.
ACCESSION   KCOD01000560
VERSION     KCOD01000560.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 686)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="62502pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>686
                     /note="ultra-conserved element locus uce-2279"
BASE COUNT          236 a           97 c          127 g          226 t
ORIGIN      
        1 aaagcccttg tgagttaaat ctctgagatg ttatcattgt atgataaatt tagctgattc
       61 ctggtctgtg ttattggcac aagggagcgc atcaaaggtg tttaacacaa ataaactaaa
      121 agaagcttct gtttttaccc aacaagatca ggtccacttt ctctatgatc agagtattac
      181 aaagctagta aagaataatt tatatcagaa gttctgtgat ggaatgaaat ggagctcttt
      241 tgaagtatga tctctgaaag cacagcatga agctcaaata aagtgaagga cattcgctat
      301 tacaagtaat gtccttaata atcttgttag tctagtctcc ctctgtaaga gacaaatgga
      361 acattattgg cttatgggct gtagtaaata atttagtttc caatattcag gctgctttga
      421 cagtaaatta aaatgacatg aaaggggctt gttgaataaa gaaagtatcc aatcaaattt
      481 aattggcatg actaaggcag tagaaatatg ttttataatt aaaccatgtt gtcttggagc
      541 tttataagca tgtatgaatc aaaatgtcaa aaattattct ttgatattgt gcatttcaaa
      601 ctttgcatgg tgaatagttt tcttaaacaa ggttctagac acgcatattg attcaacatg
      661 aaaatagtct tagttttaaa taagtc
//
LOCUS       KCOD01000561             653 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 62612pyr ultra-conserved element locus
            uce-5647, sequence.
ACCESSION   KCOD01000561
VERSION     KCOD01000561.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 653)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 653)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="62612pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>653
                     /note="ultra-conserved element locus uce-5647"
BASE COUNT          180 a          132 c          141 g          200 t
ORIGIN      
        1 aaagcagctg atttaacatg tgaagtagac ttaacaattc cttctgcttc actccctctt
       61 ccccaaacac atttaaataa accaatgtct ttgtggcctc tgcaactgta attccatgtc
      121 tccttgggga acaaggttta ggtgaagaat ggagaccaca gacccttttg ggatgaggat
      181 tagctttaat cttgaggtga ttcttgcagt tgtaggactc tgtgttctgg ggaatgtgag
      241 ctgatggatc attcctgatg ggactcccgt gaaatactac cattgcaaaa cagattgacc
      301 ttggagccca caggagtcaa cttgatgaag agcttagttg gaactggagt gacaattgga
      361 aaccaaatga atcatatcaa gtgtgaccat tacaggcctg aaaacgattc ttaattaacc
      421 actgatcctc tgtggtagca agtttccaaa atctgtgaat ccataaggga acccgtgaaa
      481 atataaaagt agcaatttac ctaatctagt agctctgctg tgctgcctct ttgacaatgc
      541 tttatttttt gtttcatgat gtgttagagg aggtcctcag gatccagtcg gttttggtga
      601 gaccattgta aacttgcaca ggcttaccca tatttttctg gtatctccct ttg
//
LOCUS       KCOD01000562             505 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 62717pyr ultra-conserved element locus
            uce-7676, sequence.
ACCESSION   KCOD01000562
VERSION     KCOD01000562.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 505)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 505)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="62717pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>505
                     /note="ultra-conserved element locus uce-7676"
BASE COUNT          150 a          101 c          122 g          132 t
ORIGIN      
        1 aatatcagca ggtcacgtct tgcttccggt gcattgggaa ttaagaagca ggattggggt
       61 tgcacttggt atttaaagca gacaaaccta tctattaaat gagactcaaa agtgaaaccg
      121 agaccgttaa attacagatg aagagtccaa aatgttctcg ttttcctaac gaccgtcgtt
      181 atattttgat gtggataata cagcagaggt taaatgaaac atgaaaaagg gctgtacatt
      241 aaaattgaga tcttcagtga agtggaaccc agcagatgta gctgcacact gtaattgctg
      301 cctgtttcct gtcactctga ttaagttgca ttgtccctgc tccaggaatc agtggcttcc
      361 catagggcac agcatgggac aactcagcag gcaaatgcac ctcctgcttg taatggtata
      421 atatacattg atgactccta aaatcaatag gctgtgcagt gggagaggct ccggggcttc
      481 catgggagag gcactccagt caagg
//
LOCUS       KCOD01000563             686 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 62823pyr ultra-conserved element locus
            uce-2126, sequence.
ACCESSION   KCOD01000563
VERSION     KCOD01000563.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 686)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="62823pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>686
                     /note="ultra-conserved element locus uce-2126"
BASE COUNT          187 a          147 c          130 g          222 t
ORIGIN      
        1 gaaagagtgc tctcccacca cttagacaga aagtttgtgt acacatcctt ccattcacat
       61 ttttttattg ctgtttgcct aggaggaaaa gaatgtgagc agaagtgcat tgcctcccct
      121 ctccttttga tgcatatttc ccataactat gtaattttct gccagtcacg attgtagacc
      181 cttcagtggg tgaaacataa tacttccttc gaaaataaag caagtcatct gacaaactgt
      241 gttcctcctc ttttgtgggt cattcagtga ctttgtttta ctgagggaac aaggggaagt
      301 ttataatagg atcagttttg tttgcaattt gtttctaata gatgccaata agccggttaa
      361 ctaggctcta gttaatggaa attttattgt gtttccccct gcagtgcaca tgaccttttc
      421 ttacaagagt ttgtgattct tgaaaacatg tatctgctgc cttgcctcgg ggtctgctta
      481 caagagcagg gatatgacca taggctcttc tgaacttgta caccagccct ctgctctgac
      541 tagaccaaaa tactttgatc atcctgtcag cggcaaattt acagcaacgt actggcttta
      601 gttccatgtg tatttctcca aatataatat ctgcctcaag aaatcaatga taagctgtta
      661 aactaaagag catggtaaca tccaca
//
LOCUS       KCOD01000564             636 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 62930pyr ultra-conserved element locus
            uce-2922, sequence.
ACCESSION   KCOD01000564
VERSION     KCOD01000564.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 636)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 636)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..636
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="62930pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>636
                     /note="ultra-conserved element locus uce-2922"
BASE COUNT          230 a          100 c          126 g          180 t
ORIGIN      
        1 tccagaggaa atgaacacgt atcatgcttt tagaccaagt actgtagcgc aattaatctc
       61 tgcactgtcc tttcctagca acccaaagta ggaaatatat gcagccaaag ctaaacagct
      121 agcaggtttc tatatttaca agaatcaaag cagttaaatg actcagctgc ctcctaatga
      181 gggttatatt tgaatttggg gagagtgggg gaagaatgga acattattgc tttaacaagg
      241 tttactgcta aactgaacat atgttgctca taatgtcact ttctaaatca atgaaattat
      301 cattatagaa catgtcgaca aattagacat gtaaagtgca agctgtatgt gggagagatg
      361 taatttggct ctataaaaag aaattaaaca ataaaatatc aatgacagat gtagttagct
      421 aaaggttttg aggtttaaat accaatttgt gaaaaaaaat tatgcagacc caatcagggt
      481 acaagataaa aataccagcc ttcatgcaac aagatgatta agtatttgga ccagatgttt
      541 ggagacctta gatgtgccct ttatttaact ggcaagcata ctggcaagtc cttaaatttg
      601 taaaatccaa gtaatgaagg ttagctcaga tggaag
//
LOCUS       KCOD01000565             436 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 63041pyr ultra-conserved element locus
            uce-5172, sequence.
ACCESSION   KCOD01000565
VERSION     KCOD01000565.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 436)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 436)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..436
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="63041pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>436
                     /note="ultra-conserved element locus uce-5172"
BASE COUNT          144 a           87 c           71 g          134 t
ORIGIN      
        1 ttttctccaa gccttctgag acatgcttgt cctaatgtcc cttttctccc tcctccgcta
       61 ttgctatttt catttgctga caagcccaac attaaacatt tgccggagtt ttcatattga
      121 tagtacgtta tattgccatt actgaacagt ttggggcttt gtggctagct accatgacaa
      181 tagatgcaca gcctggaacc agttttagtt aattagagtc aatcaatcca aactttgcta
      241 acttactcat gtgaaacaat agtataatga accaaagtct gcaagatgat tgggaaacac
      301 aaattattgc accctgataa attaaatgtg actattgcaa aatcttcctt ctaaatgaat
      361 actcagagag agaatgtatg ggtgaataag cataatttaa aataaagaaa aaaaaagaag
      421 ctgctataac cccact
//
LOCUS       KCOD01000566             695 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 63147pyr ultra-conserved element locus
            uce-4521, sequence.
ACCESSION   KCOD01000566
VERSION     KCOD01000566.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 695)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 695)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..695
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="63147pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>695
                     /note="ultra-conserved element locus uce-4521"
BASE COUNT          211 a          114 c          138 g          232 t
ORIGIN      
        1 ttaatggtat tcctaatgtg tactgcaaag atggctggat gcctgttttc cttaaattga
       61 agcatttcct taatctgagg tggttatgga aacttaagtg caaattcact tccatctcgc
      121 atacaatctt atattcatta acgtaattta atttgtcact tgtaagagag ctgtaaatta
      181 gagaatggga aacacttgag ggttccgctg tatgtgctgt ttctgttacc cagtaacttg
      241 aatactgttt aatatgttgt aagacattgt agagtttatc tggagctgtt taaaagaaat
      301 tgtaatgtac aaatgtgaat agtcacttat ctataatatg ggtaagtttt gttttgccta
      361 taatagtaga tgtttataag aaagtgaagg acaatgtttg tcatttcttg cttgcacagg
      421 ttgcactatt gaaaaattga gattgtataa acctgtccct acaagataat gatcttgtag
      481 atgtcaaata aaagttattg tactaacaag aagtggagtc ttgtttaggc aatcaccata
      541 ttccactaac aagtctgtac aattggaatt cgacaggact tggcatcttc caggctgctc
      601 taaccaggct tctgtcttgc agcccaaatc tctcagctga actcactaat gaggcaagaa
      661 ctaaactctg tttaaggaag gctcagctgc cagag
//
LOCUS       KCOD01000567             343 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 63256pyr ultra-conserved element locus
            uce-5854, sequence.
ACCESSION   KCOD01000567
VERSION     KCOD01000567.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 343)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 343)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..343
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="63256pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>343
                     /note="ultra-conserved element locus uce-5854"
BASE COUNT          120 a           51 c           67 g          105 t
ORIGIN      
        1 gacattaagt taaacaatgt cttctggtcc acagtaacag aaagaatata agacagttgc
       61 agtgcaacaa atcaaacaca ataaacaaat ctatactgca cttcatctta caggacctgt
      121 atcgcccact ctcttcggat gatatggatt cagtaggaga ctcagtgtaa aagagaaaat
      181 ggaacaatgt ttatggtttg tggtttgatg aaggtttaac atttttaaag aaaatagctg
      241 ctaatttaca gtaatagtga atcgcacaaa agagttttgc atatttaata ttaacaacat
      301 ggggccaaat taattctagt gtgtgggggt attttttggc ttt
//
LOCUS       KCOD01000568             851 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 63480pyr ultra-conserved element locus
            uce-4437, sequence.
ACCESSION   KCOD01000568
VERSION     KCOD01000568.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 851)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 851)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..851
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="63480pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>851
                     /note="ultra-conserved element locus uce-4437"
BASE COUNT          254 a          196 c          169 g          232 t
ORIGIN      
        1 accagcagca gagatgctag cgtttacaag gaaagtcctt ttaatccctt ttagaccaaa
       61 cctactactt ttatcttcac ctttaaaagg agagatttaa caaaccttat ctctattact
      121 cattactttc agcagaaaga gggactgggt tctacttgaa gacagcttca aggggataaa
      181 caacattgtc aaccatgata gtttgcttgg accacactgt actgaacatt cattttaaag
      241 cagtggtctt gaaagggttt aaaagagtgt ctagtgaaaa gaatctgaaa agattctgta
      301 cttactcctc ggcctcggcc tctgcctgtt gatggtcctc caaaagcatc atagtttctg
      361 cttccaaatc cactttcagg ataagcaggc gttcctctcc cccgagagcc tacaggtgca
      421 ggcttcatat ggggtgaaga aaaactgctg taggaagagt aactctctct tcctctgtcc
      481 tccataaacc caggcctcaa ttttgaacgg gagtaaggtg cttcccagct agacccgccc
      541 tggtttctac ctccgaaaga gtcaaggcta ttccggtagg agttgtcaaa tcgaccacca
      601 taactacctc cgaagcggct ttgttcgggt tcattataac catagccaga tctgtacaga
      661 tctcgcccac ccagagaaga cccggagtcg taagactcat aaggtccaaa cctggaaaag
      721 ttgcacagtg aggagaaaaa aaagtaagct tactaatgtt atacatttca aaagacaagt
      781 tatcagttga catttatcaa ctaaaatcaa tttattacta tactggtccg tacagttgtg
      841 ttatcggtta a
//
LOCUS       KCOD01000569             633 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 63589pyr ultra-conserved element locus
            uce-1630, sequence.
ACCESSION   KCOD01000569
VERSION     KCOD01000569.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 633)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 633)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="63589pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>633
                     /note="ultra-conserved element locus uce-1630"
BASE COUNT          196 a          121 c          116 g          200 t
ORIGIN      
        1 gtaagctaag tgcattcttt gcttgtaaag ggaaatcact tcctctaagc cagatatctg
       61 acttttgacg gcaattgtca ctgcctggat ttccctttga cagtttggca accctgcacc
      121 tctgttattg tatccactta tttgtcttgt tttcagccag attaatccat tctgttttga
      181 caagaagact gatgggtaat tgataactgt gatagacaca aacagaagag ttggatgctg
      241 aataattcag tacttttcag tatcaataag agaacaggct gaagaatttg tgtctctatt
      301 tacagttaac ctaaactaag tcagcccaga catttatgct gccagtctat cagaaaacca
      361 aacagtgtac attcggtttc catccgacaa aatgttttat aagcttgtaa caatatgtgt
      421 gaagctgcca gaataataaa taggtacagc agcccatgca tgctaatgtt aagttgtaag
      481 cagttttgtt gacaagtgct aatacttctt tcatactatc atcaaaagca gctactacaa
      541 cagccattat ttgctgactt tccaagcaag acatgatgga ttgtgacctt aatatgggtt
      601 agccaagttt tgaaagttaa acaacttgca ata
//
LOCUS       KCOD01000570             368 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 63695pyr ultra-conserved element locus
            uce-7432, sequence.
ACCESSION   KCOD01000570
VERSION     KCOD01000570.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 368)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 368)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..368
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="63695pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>368
                     /note="ultra-conserved element locus uce-7432"
BASE COUNT          120 a           49 c           61 g          138 t
ORIGIN      
        1 ttaaagagaa atctatggtc aagtatgcct tgaagttctt caggttcatt aacaaggtca
       61 aaatcaatgt tattttactg tttggaataa tttttggcgg aacaatgaaa agaaaccata
      121 gtagaagtag tcttaatata atcattttct tttcattgtt ctttatggga aaataatttg
      181 gcccgaaatt tagtggtccc atcagggagg tgatatcttt aaaaaggtgg tctgaaggac
      241 aggttttact gtactttaat aggcttatag attaatataa atcttaatat tcataatctg
      301 tactattcct tttctcaata tctagttcat ctatacatct atttgtaata tgtgtttcaa
      361 acacaagt
//
LOCUS       KCOD01000571             735 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 63800pyr ultra-conserved element locus
            uce-7984, sequence.
ACCESSION   KCOD01000571
VERSION     KCOD01000571.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 735)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 735)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..735
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="63800pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>735
                     /note="ultra-conserved element locus uce-7984"
BASE COUNT          199 a          148 c          188 g          200 t
ORIGIN      
        1 aaaacgttcc atagctgtgt atttcaggat aagtatcact aagataatga attttactgt
       61 gaagcataca gtattccctg tactggcagg tgggaaaaga gtccctggta taaatctctt
      121 ctgtgtagaa agggtgagaa gagggtttct acagaaaata ccatgtgata tggcatatcg
      181 gtgattaggc aagtgtccca aaggttattt tttcattcaa ataggtagga tctacagctg
      241 aaagtgcaag caaagggtta aatttcgggg atgtagaagc agattgtgtt ttccttctat
      301 gatgtgggct gacaagacat cagtattcta ttcatctgtt gggaattagg ctgttaatcc
      361 aatcaatgac tcttgagcta gctgcagcct gcctccccac tggggaacaa tcggatcaga
      421 cgggagattg tttaagagca cagagcggtc ccggtgtcag gtggaatttc caagcgttcc
      481 ctagtgaatt ggggatggga aagctgtctc agcccattta tcctgcccct taaataagca
      541 ggtatctgcc tcagccatgc taaagtgata aagcagtaca ggagcactaa cttttatgca
      601 gggagggggc ggggaagcac cctgagaaga gatttagcat cctgcccttt ggaataccat
      661 cctgtccatt ttgtcagggg ctggcccagc cacagccctg tgacacttgt tacagcttta
      721 ggcactgact ttgcc
//
LOCUS       KCOD01000572             346 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 63906pyr ultra-conserved element locus
            uce-4590, sequence.
ACCESSION   KCOD01000572
VERSION     KCOD01000572.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 346)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 346)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..346
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="63906pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>346
                     /note="ultra-conserved element locus uce-4590"
BASE COUNT           99 a           65 c           73 g          109 t
ORIGIN      
        1 tcaattgtca tttgtctgtt ttctctgttg cctggtggaa aggacttgtg agcacagacg
       61 cccccgaaag gctgcacagc cactaattag catatatatt gtttgtcctg gtacaaattt
      121 atagcaaaca gcaatatttt acactccagt aaagttaata aatgaggatt taggctataa
      181 aaatttcatg ttcttttgtg caaaggtcaa ttataaatag ttaagctcag attcatccaa
      241 aaactctggg cttcagctag aatgtgtttt ggtcactctg gtgctggaca aacaacagtg
      301 cctgagacaa ctctctgcag cagtgtagag tggttttggc tctgag
//
LOCUS       KCOD01000573             691 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 64016pyr ultra-conserved element locus
            uce-6649, sequence.
ACCESSION   KCOD01000573
VERSION     KCOD01000573.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 691)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 691)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..691
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="64016pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>691
                     /note="ultra-conserved element locus uce-6649"
BASE COUNT          205 a          139 c          116 g          231 t
ORIGIN      
        1 ttgtcattct tgttttcaca ggggtgtaat gtttacagtg taacaagagc tatgagtcat
       61 ctgaaaatat gtgatactct ttgcatatca cagatacttt tctcatgaat aaggaacttt
      121 tcactgtatg aagactttta tatgactccc tctctatttc caggctaaat ttactgtaaa
      181 gagagaggtt ttgcatctgc ctttgtcagt tctccagtgt attgaggtca gcttccattc
      241 tccttggctc tgatgcctgc ctgtataaac agaaattcca tttccatcct attatttttc
      301 taatcaaggg tttgtcatgc aaaaggagat ctgagatgac tgtgttttcc attatgcaaa
      361 acattccatt atgataatat cttcaggata gtcttataaa ggtgccctgc ccaaagacat
      421 cacaaatgag agcactgaaa tggtagacaa atcctgcata atttgccctc tcatttaaca
      481 ttcaggccac agagttcacc ctaatttgcc atacacattt cctctgacat cctcaatctg
      541 tacatatggt aaaaataaga attggcagct ttcactgaat agacttctgt taagtgctta
      601 tcaaagaaga agaagaaagg ggttgtaaaa tgcagtcata tttagtacat ccttcgttgc
      661 tttctctact aaactcacac ttagtaaaat c
//
LOCUS       KCOD01000574             614 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 64127pyr ultra-conserved element locus
            uce-3813, sequence.
ACCESSION   KCOD01000574
VERSION     KCOD01000574.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 614)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 614)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..614
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="64127pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>614
                     /note="ultra-conserved element locus uce-3813"
BASE COUNT          201 a          124 c          122 g          167 t
ORIGIN      
        1 tttcccaaga gagtccccat tgcgtaagct tctcgctttt aggtaatgcc tatttcatct
       61 gctgtaaaga cacacatgaa aaaagggctg gcattagcca catatccata aaagcctagc
      121 aaccaagagt attatcttta ttcagaagaa gtatagcact tttaaggttc agaaacatat
      181 ataaaaattg ggttctgaaa tggtcacccc tctgctatgc cattatagcg atcagccaag
      241 cttctgcaag gtaaatactt ttggaaaata agtggaaatt tgctgcaaat cagtcccttt
      301 tgtgcatggc cacaggagca tgttgaaatg tttggacact aatacccatt cattttcttg
      361 gctccataaa taaaagccgc cagctatgtg gcggccgtga aatggtattc ttcaggaccc
      421 agcaggaagc cccatcctta ttaccactgc agggggcagg acaggcccaa aatagcaaga
      481 caactaaatc aagacatttt caatgtctaa caaaatgact gtggtttaga gagaagcaaa
      541 aggttggaat tggacagctt ttatacttag cataatactt ttgttaaaag agttcagata
      601 agaaaatcag atct
//
LOCUS       KCOD01000575             487 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 64234pyr ultra-conserved element locus
            uce-3529, sequence.
ACCESSION   KCOD01000575
VERSION     KCOD01000575.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 487)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 487)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..487
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="64234pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>487
                     /note="ultra-conserved element locus uce-3529"
BASE COUNT          143 a          105 c           93 g          146 t
ORIGIN      
        1 actcaggaat tgtcagcagc tgccaggaga ttaacagggg ttctgcacag acttttctcc
       61 ttatggactt tcaaagatgt atgactacat tacagctacc tgggaacaga cattgaggtt
      121 gaaccataag ttgacaggcc ttaaagaaaa agttaattgc tattttcttc tacccacagg
      181 tctacccacg gatagcgccg gcattttggc actacctgcg ggtagaagtg agtagcgggt
      241 atttgaatac tcccacatct ttattttaca gcttggtagt gtttactgac ctccttttgt
      301 ccattgtgct aatgagctgc cattcttctt ctgtgaatgt ataattccat gttggggtta
      361 ctaacccaat atgcaagggt aaagacctga aatctaaaag atatcataca ttctgaatat
      421 agcacagaac caaagtacag aaatccatac ctgcacctcc ttttataaac acattttaca
      481 ttcatga
//
LOCUS       KCOD01000576             323 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 64336pyr ultra-conserved element locus
            uce-3588, sequence.
ACCESSION   KCOD01000576
VERSION     KCOD01000576.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 323)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 323)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..323
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="64336pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>323
                     /note="ultra-conserved element locus uce-3588"
BASE COUNT          102 a           70 c           69 g           82 t
ORIGIN      
        1 gttgtctccc cctaatgagc tggtgtttaa atcctgcagt ctcaatgtaa ctcttttgtc
       61 cacataaaga tacattcaca gttgactcac cattggcgtc ttgtacttgt ggctcaccac
      121 ttctttagtt tcaggaacta aaaccggacg ggcaagagac aaaacaaaaa gttcaaaaaa
      181 cgagaggcaa atgggaaaga aatagcacaa cgttcccatg ggaaagggaa gggatgcaga
      241 cagacagcag gtgcaggtac agggcacctc tcacttctac atacttattt tcatttacat
      301 atatccttgg aagatactgg tag
//
LOCUS       KCOD01000577             614 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 64446pyr ultra-conserved element locus
            uce-685, sequence.
ACCESSION   KCOD01000577
VERSION     KCOD01000577.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 614)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 614)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..614
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="64446pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>614
                     /note="ultra-conserved element locus uce-685"
BASE COUNT          181 a          124 c          121 g          188 t
ORIGIN      
        1 taaacttctt gaaacaattc tgtgttttga ggggccttct gcataaacaa agccagcagc
       61 cagttattaa agactgtgta gctactctct ctcttacctt cacctgtaca tctgtccatc
      121 tatttctcat ctatttttac atttcattat gctatgcttg ctctccagct ctcttctttt
      181 cctttcctga agacacattt ctatctggca cagaaaataa actcagattg cgggtagtta
      241 tgttaatcta attcaatcct ctgtgggcta ggagtgaaat tctaatagtg gagctgttga
      301 gggctttttt gttaatggct tggggattac attgagttaa aggctcattt cctaatcaaa
      361 cagagaggga gagagtgact ccgaatattt atgagtctcc cagcgcgagt taaacattga
      421 actccaaaag caggatttca gtgctgcaag aaagagttaa aacccctcag ggctgctgtg
      481 gagagggagg aaaccagtta agccatcagc attttcaact gctgtataac ttcagaaata
      541 atcatctcac gagctaaaat ggaaactgta gcaagatatt taaaacaaag tcaagtgatg
      601 cttcaaaaag gctc
//
LOCUS       KCOD01000578             491 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 64554pyr ultra-conserved element locus
            uce-294, sequence.
ACCESSION   KCOD01000578
VERSION     KCOD01000578.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 491)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 491)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="64554pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>491
                     /note="ultra-conserved element locus uce-294"
BASE COUNT          152 a           83 c           96 g          160 t
ORIGIN      
        1 tttgtttcat tgtcagtagc actctggggt tatttgaagc acttatttat gcactgtaag
       61 cagaacaata ctgaagaaga aatgattaaa taccagctct ctgagcaata gacatctcat
      121 tgtggcaggc ctagactcac cactgggtgg ttttgataaa ggcaatatga gttgataact
      181 gatacagttt gccagggagt catctgggga tgctgacagc tactatgctt taataaaatc
      241 attagaatgt aaatgttttt attgcgaaat aaagagcctc cagcaaagtt gacactatcg
      301 ctgctccctc cactgaatga aagcaccgat tagcattcaa atgatataat gatagtctgg
      361 ttatctttat taaaattttt caaatcgagt cttcattttg catgattgag ttttaaacaa
      421 atgcaatatt cagtaggctg gtgagccagt ctgaacactc ttgaaataat taaagtgtgc
      481 cttttatttt t
//
LOCUS       KCOD01000579             629 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 64663pyr ultra-conserved element locus
            uce-115, sequence.
ACCESSION   KCOD01000579
VERSION     KCOD01000579.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 629)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 629)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..629
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="64663pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>629
                     /note="ultra-conserved element locus uce-115"
BASE COUNT          170 a          135 c          140 g          184 t
ORIGIN      
        1 cttttttgtc tcccccacta cctggaaata tttttctgaa gatatatcca tcaccagtga
       61 atactttgta gacctcatga ttcccatagg ccctccaacc ctttcttgtt tctaatttca
      121 aaggcccttt tgagtgggaa acaaaaggtt aattttctcc agcttgccca ggctgactta
      181 atgtaacaga aggcagcaaa ttgtattgat ttagtgacat gcaactgtcc agaaagagct
      241 atttatacat tattcaggac aaacactgtc ataatggaca aacagcagca gcatctggga
      301 tgttaatgtc tacaaataag attattcttt gaaaggatta ggacgaagca ttttgtgtaa
      361 ttagatttct cagttttagg aatgaattgc cttttagcag taaaagctgt cactgaggga
      421 gccattagct cgttataact gaattaaatg cataattagt gacatgatcg cattaggatt
      481 tgtttcattt ttaactaatc cagggccagg tcgccgctgc ccacctcggc agggcccggc
      541 ctcagctggc gtgctggagt tgggaaaagt caggcgcgtg tgaacgggag ccggggcctc
      601 gccacggtgc tcgcggggct attcatcac
//
LOCUS       KCOD01000580             713 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 64772pyr ultra-conserved element locus
            uce-7647, sequence.
ACCESSION   KCOD01000580
VERSION     KCOD01000580.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 713)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 713)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..713
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="64772pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>713
                     /note="ultra-conserved element locus uce-7647"
BASE COUNT          219 a          124 c          135 g          235 t
ORIGIN      
        1 tgatgttccg tggtgtgttc aaataatcga tagcagtaca agggttgttc cattgggatc
       61 acattatatg agtttataat atacaatata tgctttgatg tatacatgta gtgtttgctg
      121 ccccctctcc ttaaatacag aaatttctag ttgtgtttat tcccctcgtc agcatacttt
      181 atcatatcaa agcctttaca gacagtgtag aactactgag ttatgtttgg gtcatgtttt
      241 gcagtgtgcc ctttaatact gtagctttag aaatgcaatt ttcagcctct gcttattaga
      301 atatgataaa gtattcctgg tctatgtcca gctccactaa tctccagact acacttcatg
      361 aattaggcat gaagatttta gtcaatgtgc tttcaaagac caatgtttag ggaatcatgg
      421 attttctaca agctgaggga gaaatctata ataggaagaa ctgattttca aacatcatat
      481 tctgtagaaa aaaatgacca gttctggctt ggaaaccaga aacattttct ttcagaatac
      541 tcaggaactg gttaaaaatg tattgaaaag gagtaggttt ttaaaatgca ctgtaagtgc
      601 tgtgtagtgc atagaggctc atacatatta gaaaccacgt agacacctcc tgaattgtgg
      661 gttaaaaaac aagccacact tgtctcgatt tagtggtgtt aacctaaact cac
//
LOCUS       KCOD01000581             387 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 64881pyr ultra-conserved element locus
            uce-771, sequence.
ACCESSION   KCOD01000581
VERSION     KCOD01000581.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 387)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 387)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..387
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="64881pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>387
                     /note="ultra-conserved element locus uce-771"
BASE COUNT          133 a           75 c           68 g          111 t
ORIGIN      
        1 tttttctgtg taataagccc aaatgtgtga aatatgttaa atctaaacta ggtatacaca
       61 gaactccatg ccgtgctgtc aggctacaac agttatgaca gaaaagaaaa cataagacca
      121 gtagcatagc tcatttttat tgtttaaaca gtttttgcat aggaaatata tccgcttcca
      181 gtaattgact gcagtatgag cagctgctag cagtataggc tggatataac agtaacaatc
      241 acattaagtc aagcttgatt tacaccagtt taaaacttgt ggcagttgag ttcatttgta
      301 acctacatta ttatcctcca accaggcaca ataaaaatta acactcaggc taaaatcagg
      361 tctgatgcca gagggcccta attccaa
//
LOCUS       KCOD01000582             721 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 64992pyr ultra-conserved element locus
            uce-3031, sequence.
ACCESSION   KCOD01000582
VERSION     KCOD01000582.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 721)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 721)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..721
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="64992pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>721
                     /note="ultra-conserved element locus uce-3031"
BASE COUNT          250 a          142 c          109 g          220 t
ORIGIN      
        1 aaagctttgt ataccctgcc tatttggcct ttgttagtca tgctacaaag acttagaagc
       61 tctgaagatt gtcttaacta aatagagcca caagaacaac aaggcacttt cttccagtca
      121 ctgatcaggc ttctaaagag taactaataa tgtgaatttt aaactgcaaa aggcaacatg
      181 aaagtattta atagcagaac taacagcaca gcataccttc tgcagaaacc tgtctgcttc
      241 actttccctt tatcaatatt gccaagaaag taaatttgtc actgtatagt tgagaatctc
      301 tcaaagacct actttaatgt ttcacgctac gtttgcaaaa caagagtaat aaaaataatg
      361 acaccattat tactcttctc tctttgtttt cagttcatca cttgcatatt tgaataatga
      421 attatattca cattatctct acacttttgc tcttgacttc ctctgctggc tgaaagtaaa
      481 gctattatcc agttgtcagc tctcaagagc cattcaacac agcagccaat ggtcctgaca
      541 tgtagatata ctactgtgca aaattatcta gagtacaatt tcaagctata tatgagaaaa
      601 ttaccagcca gtgtaaaaat gaatcttcag ctaaggtgaa atattaaaaa tttcatcaag
      661 gccactttag aacataaata agtagacaac agaattagtt gtgaattagg cacaaaaggc
      721 t
//
LOCUS       KCOD01000583             812 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 65100pyr ultra-conserved element locus
            uce-7836, sequence.
ACCESSION   KCOD01000583
VERSION     KCOD01000583.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 812)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 812)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..812
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="65100pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>812
                     /note="ultra-conserved element locus uce-7836"
BASE COUNT          270 a          186 c          150 g          206 t
ORIGIN      
        1 gccacaagca caatagcccc actcttttta actaagcaaa tcctagagag agcagttttc
       61 ccccaaaatc tgggcatcag ttagaaattc agtgaactga tgtctcaaag tgctcacgaa
      121 ggatgcggga aatttgcaga ggggcacgag cttttcattt caaagagaag tgttttcatt
      181 ataaaaaatg agagtgtgaa aaaatgctaa cacacaatag ctctctttca agtataaagg
      241 tcagaattac atctcccaag tttcctgtac gttaaaagaa gaacacaaaa taacgatcta
      301 aaaatccttc acaaaaaacc aacaagcaag gatgaagcag tactcgcctg ggggccaatt
      361 gcctctccag cagcggtaag gctgttacta ggcttgcagt accatttgtt ccattacaca
      421 atctcctgaa gccttttaca gagagctaaa acaactgcct gtaccaacac gacacatggc
      481 tttccatccc gactctttgc taatccagac gctccaacca tctttcttta agatgccata
      541 tggttggcag aagcctgtag atctagcagc acatctgctt gtatgttact tctcccctcc
      601 atctcccccc tccacaccac aaaagagaga gcaaataatt attttacatg taaccaatta
      661 aactgcattt aaagaggacg gggattattt agctctagat agattgtcgc agaagatcat
      721 ttgtctctca gtgatttggg aaatacagag aaacaaaaca aagaaatgaa aggcacatgg
      781 gcgctgcatt tgaattattt aaatgactgc ca
//
LOCUS       KCOD01000584             765 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 65211pyr ultra-conserved element locus
            uce-7844, sequence.
ACCESSION   KCOD01000584
VERSION     KCOD01000584.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 765)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 765)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..765
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="65211pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>765
                     /note="ultra-conserved element locus uce-7844"
BASE COUNT          207 a          160 c          162 g          236 t
ORIGIN      
        1 agtgtttcta attattgtct ggttacttta cacaggtatg tgcctgattt atagaaagct
       61 ctcttagcag cacgactgtc attcaggatt tgcagaaaca gccttctatt atttggtagt
      121 ggtttggttt ctgaagggta ggctgcagac acaaacaaga gacgtagccc tcagaaacat
      181 tcatgcagca tccttcagga agggagggga ggttatccaa gtctccatgc tgctgtactc
      241 atataaatgc tccctctttt gttgctgctg gactccaaag aataaaacca aaacacaaag
      301 cgaaggcagc accactgagc aaatgccaca gtgttccctt aatccatgtg gatcaaaaaa
      361 catgaacgtt tgattctgta aagaatcttc ctcagcatgc tggattaatc acatggatta
      421 ataaaacact gttgcactca ctcagtggtg cctcttctgc tttgtgtttt cttttattat
      481 tctttggagc cctgcaggaa caaaagacgg cgtgtttata agagtaccat aggcactggg
      541 aattctataa acctctctgt ctataaggta tgcttgatca tatactgcag atttgttaaa
      601 ccctgcccta gtgtccctat ctgcctaaaa tacactcagt ttaaatccat tttgttgtgt
      661 ttctgtttag ttctgcagag catgacaggg atcacatgtg gaatgctctc ttggagcgaa
      721 cacttttgtg tatcatttca gtcacagtag agctggtggt caggg
//
LOCUS       KCOD01000585             842 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 65430pyr ultra-conserved element locus
            uce-4993, sequence.
ACCESSION   KCOD01000585
VERSION     KCOD01000585.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 842)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 842)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..842
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="65430pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>842
                     /note="ultra-conserved element locus uce-4993"
BASE COUNT          237 a          175 c          143 g          287 t
ORIGIN      
        1 tcattgtgaa gcgttgcact tttggaaaat atagcccacc aatttggtgg taaacaagcc
       61 ttggctttaa gacaaagctt gttttaatct ccatgatcag gctacagatc tgaccatgtt
      121 ttttaacaaa cctcttatga agaaatccta ttcatgatta ttatctatat gagaataaaa
      181 atgtctaatt accttatatt aaatctgtat ttatcaattg tggttttctc tgggaaatta
      241 taatttgcag aaatgctcca cattccaggc tgtaacagtt ggaggtggat gtccttaagg
      301 atggaaaaaa agttcttttt taaatggcac atttactaat tataaaatgc tcttatctct
      361 ctgcagccaa agccaaaatg aacatgtgcc ttgcactaag aaatcccagg attgtcacaa
      421 cttgtgccag ctgttgaggt tatgacacct gtgccagcat cgccagctct gcccactgtc
      481 atctgttcca actgttccat ctgcactgtt tgtaccaatt ctcccatttc tgcatctgta
      541 ccttctgcag aaacgggtcc aacaatgcca gctgtgtcat cggtgccaaa tatgccagat
      601 gttctatttg tccaccctgg gccaaatcaa tgtagttttg tgctcattag ttttagctgg
      661 tagattctat ttcacaattt tttgagatgc acttagatcg aatcaattct aaatcaccac
      721 tacaactgct ttacatctat ctcaccataa acagaacttt gtttgtcatc ccgtgtttgg
      781 tcaaaattat tttaatctta ttaaattgca catggtgatt tgagttctgt catggcaaga
      841 tt
//
LOCUS       KCOD01000586             687 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 65541pyr ultra-conserved element locus
            uce-1768, sequence.
ACCESSION   KCOD01000586
VERSION     KCOD01000586.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 687)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 687)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..687
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="65541pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>687
                     /note="ultra-conserved element locus uce-1768"
BASE COUNT          192 a          121 c          141 g          233 t
ORIGIN      
        1 cctataatag gagaaaagtg acagaccctt aactgtagta gcatgaacag cactgctata
       61 attcctgggt gaactttgtc cctggatgtg tgtttttgga gtgtgccggg gtgacattca
      121 gcctctacat tcatttttat gataattcag agtaaattgt ggtgcaataa actcttcaag
      181 cctgtctttc ttgtgaaagc catgaatcaa tcagctgcag gcttttttgg gtcttttcaa
      241 tgtatagtga tcatttagat ttgacatgca ttgtgagacc ttggcttagc tcctctctat
      301 ggtctgtcat taattccagc ctttactgtt ctgaagtaca gtgaaggatg actgagaaat
      361 cattgcccct cttcagctct gttattgcac aaaatagcag cgcaataatt ttttgtcaat
      421 gttttactct aaaagctttc tacatcagtt ttgaaaagga agcaataaag cccattcaat
      481 ggtatgaata aaaatccttt gaggtttagg cgcagggctg cttttcttca gctggtaatc
      541 aaattggagc taaaatgaaa ttgagttttc ttatgaaaat agcctttgtt gctgggaagg
      601 ctggtaattc ataaacaata acctgctctt ttgtgtggat aataatatat tcatgttctt
      661 tcaatagggt aaaagccaga cctagtg
//
LOCUS       KCOD01000587             532 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 65648pyr ultra-conserved element locus
            uce-2965, sequence.
ACCESSION   KCOD01000587
VERSION     KCOD01000587.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 532)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 532)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="65648pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>532
                     /note="ultra-conserved element locus uce-2965"
BASE COUNT          153 a           91 c          109 g          179 t
ORIGIN      
        1 attttatgga ggtctactga acttctgtta tttccaaagt gttaaaaata ctcagtttgc
       61 taatataaat gattacaatt gacagtgcat tgtcaatcta ttgcaaagct gatttaatta
      121 agaatgccaa ggggcatcat ttggggccag gtatctaagc tgcaaatttt tttttgatct
      181 caacctctcc ctataggacc gtccacactg gcaccaaagg ctggagggca agagaacaaa
      241 gggaatttta tgtgtctgaa ttcaaattct ttccctttga aatgaagcgt ccagaatggg
      301 caataaaact gtgaaaatgg atttctggcc gcatttgatg ttaagccttt agtgtcaaga
      361 gccaggtcct ctctctttcc ctgaatggtc ttgtggggaa tttgtcctat aaattatttc
      421 ttgcagtttg tatgcataca ggatggcctt gtctcatagt tagaactcaa aagtaggcta
      481 ttttgtgtgt gttttaatta acttgtgttt ccagtaaaat tgcaatagaa aa
//
LOCUS       KCOD01000588             507 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 65755pyr ultra-conserved element locus
            uce-4009, sequence.
ACCESSION   KCOD01000588
VERSION     KCOD01000588.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 507)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 507)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..507
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="65755pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>507
                     /note="ultra-conserved element locus uce-4009"
BASE COUNT          167 a          110 c           76 g          154 t
ORIGIN      
        1 attaaattac taagctacat gtaaaagccg aatttccata gaagggttta caaacaaatg
       61 ctgaaaacat aatttgaaga aaaacttgca aaaatagcaa aagaaggtaa ttacctatct
      121 ccctttggtt ttcttttttg tactgtcttc cctttgggtc gtctttcact tcctaaacag
      181 gggctcccac cagggcctgt tacccgtatt gattcaaggc ctttggaaga tttcttaaaa
      241 gtaaattcca caggttctcc ttcttttagg cttctaaatc cttccatgaa aagcttgctc
      301 tgtaaatagg aaaaatactc ttaaaaacag tatttacatt tataatcaat aggacaaatt
      361 accccgtcta ccaccctaca acacatgcaa gtagtttcct ctgcatgagc tgtagcagaa
      421 cattacagtc ctgggtaata ctaaacacga aacaagaacc cattttcagt cagcaaaact
      481 gaaataacat tttccttttc cgtgatg
//
LOCUS       KCOD01000589             410 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 65862pyr ultra-conserved element locus
            uce-7197, sequence.
ACCESSION   KCOD01000589
VERSION     KCOD01000589.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 410)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 410)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..410
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="65862pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>410
                     /note="ultra-conserved element locus uce-7197"
BASE COUNT           90 a           97 c           87 g          136 t
ORIGIN      
        1 ggaactttag gctttctatt taaggtggcc acaaacaggt gcatgcttta cagagggtct
       61 cattctgcat ctcccactga tatccctggc ctcctgaact cccttttgct acctccttcc
      121 ccctttttta tgaatgatag cttttcagaa cagcttgttg ggaaaaacac tctttgtggg
      181 gtcagatcct acacattttt cttttttatg aaaggactgg ttctgtgttg caggtatgac
      241 gtacgtgtgg acccccctcc ctgctggctt gtgataaatt tgctttttca tctctcgcca
      301 caggtgcttc tcaattaaaa tccactttgt ttcaaaactg aaggcttgtt taactgagcc
      361 cctggggaga gttgtcagat cccaggatag gtgacacaaa tagattggtg
//
LOCUS       KCOD01000590             753 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 65972pyr ultra-conserved element locus
            uce-1209, sequence.
ACCESSION   KCOD01000590
VERSION     KCOD01000590.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 753)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 753)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="65972pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>753
                     /note="ultra-conserved element locus uce-1209"
BASE COUNT          238 a          148 c          111 g          256 t
ORIGIN      
        1 aaaaggcctc caaattagga tactgcttca ttaagctttt gacatttgtc cagttaaaac
       61 tattgactca tactttcatt tcttccccct caaattacta cagtgccaca gctgatctaa
      121 ctatattttc catttcttat aaatagccac aagaaaagta ttaattatcc ttgtacgatt
      181 taatgcacca actgccttaa cctttcaggt ttccttaaac gccagcataa caaggcatat
      241 ccatggcagc aaatgtgatt tatgacagga atctttaatt tctgttttta aatatgttac
      301 ccaccgatct gcatacattt aaattcgcct gcaacacttt tctctgtctt gaggctgttg
      361 tttaatattc aaggatgatt tttgtccaca tacattttgg tctatgtcac ctcagattaa
      421 attattactg tttgcagcct ttttggagca ggcctcaggc ccttatttac aagaatcaat
      481 gaaacagtaa tgaaaatcca tttttcatac tatcagctct ggcctgcttt tatttagtta
      541 gctgtgtcta agcaagcaat tcattttgtg caaatgtcac gttgataaaa caggacgagc
      601 cagcaaaggg ttaatcatga aataaagcct ctgctttagc aaagcacatc tgtaatggca
      661 aaattaaaaa aatattttct taatgtatgc aaagtaatgt atattgacac ataagcaagc
      721 cttttcatga tgaatattga aatatatatg caa
//
LOCUS       KCOD01000591             568 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 66081pyr ultra-conserved element locus
            uce-7488, sequence.
ACCESSION   KCOD01000591
VERSION     KCOD01000591.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 568)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 568)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="66081pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>568
                     /note="ultra-conserved element locus uce-7488"
BASE COUNT          169 a          132 c          110 g          157 t
ORIGIN      
        1 aggccatcga ttctgaagga caatgtacaa atacgcaaag gggaattaat ctccttccag
       61 acacagaata gccttaacaa agcctgcccg tggacccatt tcctcctgaa ggagaatatg
      121 caagacaaat tgttctgtgt cccagtaaaa gacacatgca atcaaaaata attctaaacc
      181 tcatctagtt gaaaactgac cttccttagc ttgaagctgc ctgtaggagt cccaggacag
      241 gttgttctga cattctttta acatcgtttc atcagcacag ccaaaactaa tcagaagaat
      301 attacccgat gacaggtgca tttattctgt caattaaatc agatggttaa atcgaaatgt
      361 gccccaaatc tctcttgttt gcattatcca tattggcatt tcttggctgt ggttcatcgc
      421 tggctggaag tcatccagcc cctgcagagt cactttgcaa tcctgtgcca gcaagtttcc
      481 atgctctgca ggttacagtg agagcagagt ggtcctacag aactgacctg gaatgttaca
      541 ctgcttcact aagatttatt taagacaa
//
LOCUS       KCOD01000592             403 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 66194pyr ultra-conserved element locus
            uce-1245, sequence.
ACCESSION   KCOD01000592
VERSION     KCOD01000592.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 403)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 403)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..403
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="66194pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>403
                     /note="ultra-conserved element locus uce-1245"
BASE COUNT          136 a           81 c           72 g          114 t
ORIGIN      
        1 ttttttttgc ataatattta cctcaagctt gcttcaggct aatgtctcaa taatttccac
       61 tcctttctca ggtccttacc acaaaggact tgactaatga tccatggaca aaatgaagca
      121 tttaaattta ttcattaatc attcatctcc agctcattga aaactttaaa cttccacaaa
      181 attaagatag aacattgagg agtgattgag ggagacagct ctcagagagc taaaaaagac
      241 tggtaaacac aaaaacaaaa gtacattaga cagagtgtct gcacatgggc ataggtattg
      301 ttccagttta cataaacttt aagtactgaa ttgcaaagcc tttatttggg ccaacacagt
      361 ggggaaatct ggggaagcgt accgtcactg tcaacaccgc cag
//
LOCUS       KCOD01000593             330 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 66299pyr ultra-conserved element locus
            uce-6610, sequence.
ACCESSION   KCOD01000593
VERSION     KCOD01000593.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 330)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 330)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..330
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="66299pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>330
                     /note="ultra-conserved element locus uce-6610"
BASE COUNT          118 a           66 c           41 g          105 t
ORIGIN      
        1 atttttcctg agactgcatt aatgaatcca ataaataaag cattgtatca cccatgccgt
       61 atagacatta attttagaac aaaacattaa tcaatttaaa tttatgtact aattcagaca
      121 caatcaattt gaacttctta tgacaattaa caaagctttt gctacatccc taaaacacac
      181 tgacccatca attatggttt gcatcaaact aatgctaatg gtacttcctt cttccttagg
      241 ctgtcagcag cctacctgat tggtcaactt caatgcagca gatcaattaa tataaattat
      301 acatgcacgg aaagatgggt taatatcata
//
LOCUS       KCOD01000594             545 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 66409pyr ultra-conserved element locus
            uce-5340, sequence.
ACCESSION   KCOD01000594
VERSION     KCOD01000594.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 545)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 545)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..545
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="66409pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>545
                     /note="ultra-conserved element locus uce-5340"
BASE COUNT          165 a           94 c          102 g          184 t
ORIGIN      
        1 ttttcctaaa tagcagtgtt gtcaaatctc atactggaag taacagagat aagcagtcat
       61 ttaatttatt atttaatttt aacctcccac attatataaa cttgatttct gtatcgtagc
      121 cttaattgtt agtttgtgtt ggtttaatct ctcttattta agtatgtttg ctttaataac
      181 atgctaagac aaagaaactg tagattagag actttatttt cagggtaaaa tgatacggat
      241 aagtgagcgt caactgacca gaaattattt gcttctgtct gttagacacg taatggagtc
      301 atttaactag tcaaattagg agctgtagaa atgcaccatg cttcattact gagttcgaat
      361 gggcaccatt ttacatttac gtcaaaaatt atctcatagc aaattaatgt tttcattgtg
      421 tggggaagcg ggagttgtgc agtatcagca ccacctagag gatgcgacac agatggcttg
      481 gagatgttgg tcacaaaagt acttcaaacc tgccttcccc agaataaccc tgtgcctcat
      541 tctat
//
LOCUS       KCOD01000595             570 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 66515pyr ultra-conserved element locus
            uce-5722, sequence.
ACCESSION   KCOD01000595
VERSION     KCOD01000595.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 570)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 570)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..570
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="66515pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>570
                     /note="ultra-conserved element locus uce-5722"
BASE COUNT          164 a          102 c           81 g          223 t
ORIGIN      
        1 tttttaatag ttaaagcaat gtgtgtggtt acataacctt ggtaaaattt taatgtgggt
       61 attttgtctc agcttctttt cctttaaaaa tgagaatata aaaaaggtgg cccccaaaat
      121 aaatgaaact caatttcacg gcacattatc tttctcaatt ctttcctctc agctttcatt
      181 ttcattaaaa tcacagacaa ccataaatta ataattactt caggttgact aaatgcaggc
      241 cacagtattt agctctcgtt ttcctacagt ggcccttctt gttcatgctg gaaaaatgtt
      301 aatttagata atgtggcttg ccccttgtca tataattctg ttttgcagtt tcactgatct
      361 ataatggtct cttctgatta ggtagtatta actttatctt ttgttcaatc aagcttcaca
      421 gtttcttctg actagataac tattgtgaaa tatcagatga aatgttctat tatctgtatt
      481 tctgttatat tttgattcat ctctatgttg aacagcattc agcaacattt gcaatttctt
      541 ccagtaataa atttattggc cattagccca
//
LOCUS       KCOD01000596             372 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 66618pyr ultra-conserved element locus
            uce-5971, sequence.
ACCESSION   KCOD01000596
VERSION     KCOD01000596.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 372)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 372)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..372
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="66618pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>372
                     /note="ultra-conserved element locus uce-5971"
BASE COUNT          105 a           60 c           66 g          141 t
ORIGIN      
        1 attcattttt aaagaccagc ctgtataaac agtattgcat tttggtttgt tgattgataa
       61 ttaaagagaa ttatatctgt actcagtgta cgtttaaaaa attgttacat agttagtgtt
      121 aaaaagtaat atttggatca gtgcctccta tggatttttg tagattttct cctcagtgag
      181 gcatgcagtc aatacctaat ttctctggag atttactgca cttaacatat tgaggttctt
      241 ttaaatactc cagtcctgtg cattgagtgc gttagcccag ttttaatttg ctatcattga
      301 tgaacataag agtatgaact gtctatgctg aattccctcc agcatatatt tgtgtttgcc
      361 atcgattcca ag
//
LOCUS       KCOD01000597             618 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 66720pyr ultra-conserved element locus
            uce-5095, sequence.
ACCESSION   KCOD01000597
VERSION     KCOD01000597.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 618)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 618)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="66720pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>618
                     /note="ultra-conserved element locus uce-5095"
BASE COUNT          210 a           93 c          101 g          214 t
ORIGIN      
        1 aaaattattt tgatgcatta tgaatcacct gtaaaagaat aagtaagtga ggacagtctc
       61 aattttggta aatatttata gagccaaaca atatgaagta tatgtaacaa tcaaatttct
      121 agtgaaaatg tgtgcaagaa ggtttatttt gaaaggaaaa ttcctactcc cagtgtcata
      181 cccaattaaa ttctccaggt aatgacccca tttgcataga gagctgaacc cacaagtggg
      241 aattttaatg ggcacaccac ctgagtacat taattgagag tgacactact tgaactagtt
      301 ttgtgcttac cccactgaaa attctactca tattattttt aatgtcaagc tacaagtcaa
      361 atttcaagat gatggatttg ttctttttta agcattgaat ttgaataaaa ggaggcttta
      421 attctgttat gcattgcata gctttaacta atctgtagtt ctgattctta cccagtgatt
      481 ggaatttaat tttattcatt aatttgcaaa taattagata gaaaataatg ccttcagcag
      541 ctaaattact tctggattgc tgtttaatgt actttaacca gaatatgtgt tacagttaag
      601 ctgacataat agtttact
//
LOCUS       KCOD01000598             521 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 66828pyr ultra-conserved element locus
            uce-7025, sequence.
ACCESSION   KCOD01000598
VERSION     KCOD01000598.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 521)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 521)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..521
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="66828pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>521
                     /note="ultra-conserved element locus uce-7025"
BASE COUNT          149 a          120 c           62 g          190 t
ORIGIN      
        1 ttttctctgt ccttaaatcc cataattgtt ttattggtac attaagaaat gtaaataatc
       61 attccccctc cctgtaataa attagacgca acctgtctag ctctgaaaat taacatttca
      121 atatcttcag tcacacaatg acatcatatc aatatttaaa atcattttat gcatgtattc
      181 caggttgtcc aacttcatta ggggcattca tcagccctcc ggctacagtg tattcccatc
      241 ggagttgtag gcctcaggcc ctaccaaaca gaaatttaaa ctaacttgcc tttttaattc
      301 acattattct caaatattct cttttttaac cccctgccat gactaaggtg tttagacttg
      361 gctatgattt tgtacatatc aacatttaac tttttatgtc aaagtacatg taaataattt
      421 ctcctttaat ttccctcccc cttccccatc catcattagc acagtaataa ctgtgcttct
      481 tttaatgctc tatgctaact taatttgagc tacaggttga t
//
LOCUS       KCOD01000599             393 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 66933pyr ultra-conserved element locus
            uce-3999, sequence.
ACCESSION   KCOD01000599
VERSION     KCOD01000599.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 393)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 393)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..393
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="66933pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>393
                     /note="ultra-conserved element locus uce-3999"
BASE COUNT          103 a          108 c           78 g          104 t
ORIGIN      
        1 cgctgtaagg agattaaagt gacataaacg tcccgagtgg gaggagggag ggcagagaat
       61 tcaggtcacc cccatccgtc ccccatttga cagccgctat atcgctatcc aatccaataa
      121 aaaaatcccc cccttttgct ttaattaatt ttacagctag cttgcttaat tactttcaat
      181 caaaatcctc ctgccatcgc aaaattagag atggttgagc tccattagcc taaattcttc
      241 atttccatat agaaagaggc tccctcagca aagccaacag ggctccctcc tattcaagct
      301 gccatcggac agatgcctgt ccctctgtct ctcttcagtt ccttgggaga aggacggtgg
      361 ggaggataga gtcttgttcc caccttcccc tta
//
LOCUS       KCOD01000600             469 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 67043pyr ultra-conserved element locus
            uce-2713, sequence.
ACCESSION   KCOD01000600
VERSION     KCOD01000600.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 469)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 469)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..469
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="67043pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>469
                     /note="ultra-conserved element locus uce-2713"
BASE COUNT          133 a           72 c          109 g          155 t
ORIGIN      
        1 tttctccgca gtgataattt ttaattggtg tgtattgcgt cttcagtatt aaagacactg
       61 taacttctgc atttatgaat actgtctcat aaatgtaata ttaagggaat ttgtataatc
      121 tctaataata agattaacat gatgcgccgt aaattttgtc ctgcagtttg ttaatcagga
      181 aaggatagtt gcaagctagc tgtattgctt tcttctgagc tactggaggc tggctgagct
      241 ctcagttatt tacctcaata gaaaactgaa agggaaaaag tgaacaaagg aggtctgttt
      301 tgcctgtccc acttgctggg ctgttgtctt tgcccttttc agtgaaggag ggggtagagc
      361 tgggtcaaag ttgaagaaca ctgaaaagga attcaagtct tatattgaaa tgtgaatgat
      421 agcttagttt gagcgccgaa cacattttct gtgggaggtt taactgaca
//
LOCUS       KCOD01000601             759 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 67153pyr ultra-conserved element locus
            uce-7289, sequence.
ACCESSION   KCOD01000601
VERSION     KCOD01000601.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 759)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 759)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..759
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="67153pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>759
                     /note="ultra-conserved element locus uce-7289"
BASE COUNT          226 a          154 c          160 g          219 t
ORIGIN      
        1 agtctgccga cagacagcct tacgcttaca tttagtttaa atgcagtgca gtatagtttt
       61 tcattatcat taacgtgctc ctggtgggca gagtgcaatg cagtggcact ggtcacactt
      121 cattgcttta tctcatatga caaagagaga tgatgtgctt cagcccaggc cagaagatga
      181 aagcgaaagg tggccatggc aaactccccc tgctgccgag gaaccacggc caggctgcgt
      241 tgtgtgactt gctaacagca cgaaggggca gacaaataga ttttcctcta tatttataac
      301 cagcatcatt cttcctttca ggcctttcag tgcaggtagc tgttttatat gaaatgaaca
      361 atctttatag acgtaccaga gccataacaa ggctgatttt cagcgaggct gaggtatata
      421 actcttacag aattgtcagg cttcttgctc aacaaatcaa gcctaactta tgatgtttgc
      481 agtgtaattt ttattcctgt ttgactagcc aactacccag tggtaatagg atgttagaaa
      541 agggcagtag caatgtttgt acatgccatg attgataggc aaactctgca tttttcattt
      601 atatctcctg atttcaaatc agttaagttt aggaaaaatg aaacaaaatg gcaagaaaaa
      661 tgcttgcaga ttgcagtcca gcactctcgt agatctgagt tcagcccaca tctgctagga
      721 ttgtctggaa acattaagat atctaaatga aaatcaata
//
LOCUS       KCOD01000602             715 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 67266pyr ultra-conserved element locus
            uce-5013, sequence.
ACCESSION   KCOD01000602
VERSION     KCOD01000602.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 715)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 715)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..715
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="67266pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>715
                     /note="ultra-conserved element locus uce-5013"
BASE COUNT          183 a          147 c          203 g          182 t
ORIGIN      
        1 cttcaaaggt gtctggactg gtgcctaagc aaactgtcct gtgaagttgc tgcctctgta
       61 ggtctgatgc ttgcaccctt ctgtttctta acagatggga caaagattag taaatgccag
      121 gttagcagct cccttctgct gcctcggatt tgagttttgt gacttgggga ggagagcacg
      181 gctggggcgg ttggggagct gggtgtgggg agggatgtca gtttatcgat cgcacctcag
      241 tcaggagagc tgcgggcgca gcgctctgag cacgagcggc agcgtgctta atgtgattga
      301 aaggcagtta aaatggcggt gaccttttca gggggaatta gattgcctgc caagagtggt
      361 tagagggagt gataacgcca gcttgaggaa gctgtccagt ctgcttcaaa ggcagggaaa
      421 gcaagctggc agcaagtacc atttaaagca cgagccgtgc ggtctgatag aacagagatt
      481 gctgtcctct ttagatacga aagaattgaa gaattgtagc taagttctct ccacctgccc
      541 tgtcctcctc ttctcccctt cagctaaaaa gccttcctct agctcttctg ggtttctttt
      601 gcttaaaaat aacacagaac agagaaagag gcaagcaggg cattttcagg gaaggatata
      661 agaaagatca acatgacaag aatctgtctg atagattgta atactcttga agaag
//
LOCUS       KCOD01000603             710 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 67485pyr ultra-conserved element locus
            uce-4626, sequence.
ACCESSION   KCOD01000603
VERSION     KCOD01000603.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 710)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 710)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..710
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="67485pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>710
                     /note="ultra-conserved element locus uce-4626"
BASE COUNT          149 a          195 c          179 g          187 t
ORIGIN      
        1 cacttgcaag ctgactccgt ctctgctgcc ttgtcatgca cagggtaagg ggatagaccc
       61 agggccgctg accgggtacg tgatcccgcc tcctctccct atctttgtgg ccagggaagg
      121 atggagtgat agtgcactgt tccctacaaa aatctgccat tcaggggggc gaggtcggga
      181 aataatgaag tcagcacatt agtgccttgc ctgctgagct cactctgctg aaagctgccg
      241 gtgggtgaat ttcccagcgt ttggaaactt tgtctcagtt ctgcgggttt gctcaagtgt
      301 gcgatggctg tttgcaaagg gagctttcct gctgggtggg tttgctttcc tcctcacggc
      361 tcagggaagg tgagagctct ccttcatgtc tcccctgccc ccactgctgc ccctcgttca
      421 ccccacaaac acaatgctct tccagcgggt tccctccgct ggggagcttt tccctctccc
      481 aactcccaca ctgggacatt tttccacatt tccaggatta cggccacttt cacttagatc
      541 tatgtgtgtt gcctccacat acaaagaagc acttggggac gggattagta ggattagaag
      601 agattcacat atgtccagtt caagcaattg gtattcaaag ctttacactt ccaaatgcca
      661 ccaagagaga gaaaaggagc tgggagcttg ctttgcattt cagcaccttc
//
LOCUS       KCOD01000604             586 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 67595pyr ultra-conserved element locus
            uce-2450, sequence.
ACCESSION   KCOD01000604
VERSION     KCOD01000604.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 586)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 586)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..586
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="67595pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>586
                     /note="ultra-conserved element locus uce-2450"
BASE COUNT          208 a          113 c           98 g          167 t
ORIGIN      
        1 aagacaatca acaagattct gaagatacac tctacaagga aatagttcaa cattttcaca
       61 taggtcaaaa tggaaaatat ttaaatctac ttgtcacaaa cagaagtgca gagctgatca
      121 gaaaaataat gtatccgtta cccaaatgat aaagatactg caacaatgca aataaaataa
      181 tgaatatgta ataaatacct actgctgtag tttctatgta tttaattacc attgtatttc
      241 agtgagtgct gttgtctgca tcattctatc caacaaagga gggatgtccc attgaacaga
      301 ttggttaatg ctctagggca acagatgtct actggaactg caggagacca gcaactggtg
      361 gcctgcccat cttctgaaaa ctttcaatag actcatgcat atgttcacac aatagggcat
      421 gtggtagaaa tgcaaacctc tttttaaccc ttttatatgc tctctttccc tctcaactga
      481 tatatgaagg tcaggatcct tggaacacag gctcatggtg tttgttcttc agcctaacat
      541 ccgaactcaa aacataaaac aaaatagatt agaaacttta taaaaa
//
LOCUS       KCOD01000605             559 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 67701pyr ultra-conserved element locus
            uce-4335, sequence.
ACCESSION   KCOD01000605
VERSION     KCOD01000605.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 559)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 559)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..559
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="67701pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>559
                     /note="ultra-conserved element locus uce-4335"
BASE COUNT          150 a          128 c          123 g          158 t
ORIGIN      
        1 cccccacttc tacaccacca gcacaaacat ggaacatatt ttagcagaag tgccccagct
       61 ctatcatatg tgctgtgcag agtcatcatg gccatggtgc atagctgaga gccggaaagc
      121 aaacagctgc tgtagcctga tttgagttaa aatagtgtca gtgtttagtc tggcgcagtg
      181 cttcaggaga gattggcagc tgggtcaaac aaagtcattc cattggctcc cttcccagta
      241 agcttctgct agtatttagg tactagtgca gcctaggccc cttttctcag ggatagccta
      301 acatctgacc gcacctttta aaaattgcct tttcactctt taagataaat cctctattat
      361 acaatctgcc actaattgta tgttaagact gtttttctct cgaaagctga cgcatcctgc
      421 tctcaacgtg gtgtagaaag cgggctgtta cagtgctgga ttaataaaag gggcctttat
      481 ggtttgtgaa agaatatctc tgtgcttagg caggaaactt tttgatccac agaaaagcca
      541 gacgacatct aggtaaggc
//
LOCUS       KCOD01000606             487 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 67810pyr ultra-conserved element locus
            uce-1201, sequence.
ACCESSION   KCOD01000606
VERSION     KCOD01000606.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 487)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 487)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..487
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="67810pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>487
                     /note="ultra-conserved element locus uce-1201"
BASE COUNT          158 a           73 c           85 g          171 t
ORIGIN      
        1 aatatagcag gatatgattc agcttttaag agtaaagttt ggaccagaaa tacgtgaact
       61 gattgtgaat atttattaac taaataattt aataataaag aaaatgccta cttgattaat
      121 tgttacagag taaaaattac aataaaactg tcttgatcag tgctttgcag aagcaccatt
      181 actgtctgtg cagttgttta acaaggattt aattggaaag ataagtgaat gcacatttaa
      241 aagtattgtt aatttgcttt ataatcaccc catccttcac agtattgaca gcaccaggca
      301 caaacccctt tctcttttac aagtattatt ttccatatgt gcacaataaa ttctgaagca
      361 gtaattggaa attttatgga tttcaacata cctagtgttt tgagtttata ggtaccatat
      421 cccttctcta aaggttgttc attggtggca attacccata ggcttgttgt ggtgtggtag
      481 tttgttg
//
LOCUS       KCOD01000607             415 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 67916pyr ultra-conserved element locus
            uce-1986, sequence.
ACCESSION   KCOD01000607
VERSION     KCOD01000607.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 415)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 415)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..415
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="67916pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>415
                     /note="ultra-conserved element locus uce-1986"
BASE COUNT          130 a           72 c           76 g          137 t
ORIGIN      
        1 gagtctttca ctttttaatt cagcgattcc ataaacatct tctgccaatt aaaaaaatat
       61 ggtaatacaa agcaattttg tttgctctaa ttctggtgcc agattaggta attagaatgg
      121 tgtctaatat ccttccagta aatgtttctc cataaatgca aaatggaatc gagggtctgc
      181 gggttacatt agcttaatga aaacaagact ttaatgcata ttgttacagc agcgtttgaa
      241 tgcacttatt aaggcccgtg ttcccacaac catatggttt ttgtcattaa tgtctccttt
      301 gaggaaaagc actaaaatta ggttgcatct ttgattccaa tgatcccaac taaatgatat
      361 ggtaaccata tggtgtgcag tactgataga agaatctgga agtatccttg taagc
//
LOCUS       KCOD01000608             366 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 68020pyr ultra-conserved element locus
            uce-6335, sequence.
ACCESSION   KCOD01000608
VERSION     KCOD01000608.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 366)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 366)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..366
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="68020pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>366
                     /note="ultra-conserved element locus uce-6335"
BASE COUNT          129 a           55 c           65 g          117 t
ORIGIN      
        1 aacattttgt taaatgaata aactaagaga aataatttca gaagaagtgc aaaccagaaa
       61 acaaataaac cttaatacta ccacaaataa atgagactaa ggcaattgtg ggactgctca
      121 aagccttttt gccttgctga atgaaagcaa tccctaagac tgaatgggta atgagatcct
      181 ggctcctgag attttagctt tcttaatcat gttcataatt aattcaagaa cattgataat
      241 ttcattacat tctttttgtc ttatcaataa atgatgtgcc tgcacttttg gtcctgtgta
      301 cagggagaaa ggagatgctt tgggtaatat tgcaccagga attgtatatg tatatatgta
      361 tatata
//
LOCUS       KCOD01000609             584 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 68124pyr ultra-conserved element locus
            uce-232, sequence.
ACCESSION   KCOD01000609
VERSION     KCOD01000609.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 584)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="68124pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>584
                     /note="ultra-conserved element locus uce-232"
BASE COUNT          203 a           82 c          101 g          198 t
ORIGIN      
        1 tttatttaaa atgaaacatt aaaacttcaa agacctattc tggatatata aagtttcaaa
       61 ttaaaatgca ctatgtgttt cacagcaaaa aagcctatga agatgaaatg gatgctttat
      121 ataaaatatt tacatagata gaacataaaa aatgtaccat agttggtaac ctttatgact
      181 tggggaacca tgtatttaca tatctttatc ctcgcatgtg cgtatgtgtg tgttgtgtat
      241 atatttttaa cagttgacag ctgttttaga gcatacagag atgccaagct gaatgagggt
      301 cttgattact tcaagattag ctatctaaag tttctattca ttttaagtgt tgttagtgcg
      361 aagagtcatt agtcacttcc ttgtctcata gaacatcagc atacatttac attgttaatg
      421 aacatttggg gtaaatgaat taatggcact tttaaacatc aattcaatcc taataacttt
      481 gtatgtcata gaaatgttaa ggttgggata aaaatgagaa accttttcag tcaaggtaac
      541 taatcgcttc tgggcacaat aaagggtaaa attaacctac agtg
//
LOCUS       KCOD01000610             566 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 68233pyr ultra-conserved element locus
            uce-4159, sequence.
ACCESSION   KCOD01000610
VERSION     KCOD01000610.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 566)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 566)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..566
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="68233pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>566
                     /note="ultra-conserved element locus uce-4159"
BASE COUNT          198 a          113 c           99 g          156 t
ORIGIN      
        1 aaatgctgga agacaagctt aaataaagtt ctaagaaaaa agcaagacac gctgtaattc
       61 caagaaccta ttacttcaga caatttactt caaaaaataa aatcagaatg gtaaatgatt
      121 acccaaaagc aatcatgtca tcatcactga aagatggaat aaaataattt tttgtgaagt
      181 ggctgaatga gagcaactta aaagccacgg agcctgtcag aagcacatta tttcttttta
      241 caccccgttt cccaattcat ctcagtgctg ctgactaacc ttggctccca gcaggtggag
      301 catttaaaat aaatagcatt tcctacaaaa cgcgctccaa ctgccccatg acagacgctt
      361 ccaattcctg gccagccact ggatcagctt cagcggtatc taacaaggtg taaatacaat
      421 aacaagcatg taattaagtg agcatgatga agttaatgga gataattcat tccattttgg
      481 gcttatgaat attctattag atgttatcag gcagctggaa tagctgttaa tttaatcatc
      541 attcagacca gcaaaatgtt ctttgt
//
LOCUS       KCOD01000611             491 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 68340pyr ultra-conserved element locus
            uce-2472, sequence.
ACCESSION   KCOD01000611
VERSION     KCOD01000611.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 491)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 491)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="68340pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>491
                     /note="ultra-conserved element locus uce-2472"
BASE COUNT          146 a           78 c          102 g          165 t
ORIGIN      
        1 tttctgggaa cttcatgcac taaatactgt gtgtctcatt tgcagacctc ataacaactg
       61 tgggtctttc tctctcgtct gttcattgga ttttcttctg catataaatg cattctctgg
      121 tcattttgaa ggatgtgtct gctacactgt ttcattaaac tgctgcgtta tcgggtaatt
      181 gtttaaacat aatgccatag cactatcaaa aggaaaggtg aactaatggc atttgcaaat
      241 gtcagggatt atcttaacac ttttattata gtttataaaa agtaggttca gggcattcca
      301 tggcaattat ttccacagaa attgggtatt taaataaatt gctaattatc tggatatgac
      361 agtattgaaa accctgctaa tgagttattt gataagtgta gcttatggtg gccacctaca
      421 ggtggcagaa agaaagaacg agcgggataa ttgcaatcag aaggaatgtg atgcacatag
      481 tttgtgtgta a
//
LOCUS       KCOD01000612             717 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 68451pyr ultra-conserved element locus
            uce-2527, sequence.
ACCESSION   KCOD01000612
VERSION     KCOD01000612.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 717)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 717)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..717
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="68451pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>717
                     /note="ultra-conserved element locus uce-2527"
BASE COUNT          188 a          197 c          140 g          192 t
ORIGIN      
        1 cagcctcttc cacatgctgc tgtaaacagt aggctcttgg aggaggctgg aagatggcac
       61 tggtaaggtt catgggccac ctcctggctc tctcctctcc aagcacagcc acactgccat
      121 gtggaggaaa cctttggcag ctgtcttgtg ctgggagaca gggcttgttg agcttggctg
      181 agtaatccca gccactcccg tcactgcagc tgcatgcatc cttgttctcc caacctaagg
      241 atcgctgcct ctctgaatca ccccattaaa ttgctaatat cttattgttc tttaagattt
      301 cgaaacttgc tgcgaaacgt ttacagataa tttttttttg cctgcagtca ctgtgcctaa
      361 tgcccagtca ttgagtgcca tatgtgttta tatgcactgc aattttccac ttgattacat
      421 tttaccacaa acactttcat ccactccaca aagacagcag caacacatcc ataatgttcc
      481 gagcagccca gacagacaga gctcagacac aaatgtctcc gggcactgca aaatgtgaga
      541 ttcttaaaac caactgaccc agcctccagt tctgaagtct ccaagggcac aaacacctca
      601 gtcacctaac ggaatgtgca aagttaactt tatgctccag ctttcccatt aatgctgctt
      661 gtaagtctgg aacagctaca caacatggac atgaaccaag gatatctcag attttcc
//
LOCUS       KCOD01000613             305 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 68553pyr ultra-conserved element locus
            uce-6922, sequence.
ACCESSION   KCOD01000613
VERSION     KCOD01000613.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 305)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 305)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="68553pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>305
                     /note="ultra-conserved element locus uce-6922"
BASE COUNT           84 a           66 c           65 g           90 t
ORIGIN      
        1 ataaaatgtt gttgctgttc tgatagcagg gcagcagtgc ccgggttcat ttagagctta
       61 accactgtgt tgtaggttct gatacttcac acagagttgt attgtgcagc tgctctctct
      121 ctttgcaggt ttgtgtatta gacctccgga aatagcgctc ttagttggaa gccatggacc
      181 gactatgaat gtgtacatag ccaaaatgac tgtccctgac ccatgtactg ctatagtccc
      241 aatcgaacca tggccagtcc actacagcca aatgtaaaag aaatatatac atatactgta
      301 tataa
//
LOCUS       KCOD01000614             543 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 68660pyr ultra-conserved element locus
            uce-5734, sequence.
ACCESSION   KCOD01000614
VERSION     KCOD01000614.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 543)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 543)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..543
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="68660pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>543
                     /note="ultra-conserved element locus uce-5734"
BASE COUNT          165 a          123 c           94 g          161 t
ORIGIN      
        1 taacatttct gcagcttcca tgagtattta gctccaactc ctctggccat ttcttcttgc
       61 tggcattgcg gccacagctg tcactgtccc tccagccaat gtgcacaaaa atcggaattc
      121 aagtcctgtc tgaaaagtaa aagggacaaa ttagtttctt gtcactgcgc tgcaataaat
      181 acattgtcat ttttataccc cagtgaatca tattctccat ttcccccgta actattatac
      241 agtctgctgg cagtacatca ttttttggta attttatttt caccaattgt tttatgaaat
      301 ttttgagttt tatggacact aaaacaaatc tagcctgcga gtattatagc cctttaaatc
      361 accggcagga aatctcaagg ttcctccaga ctgtgagaga aggaagcttt aggaaagaaa
      421 gattgctcct agcttataaa ctgagcaaaa acccagagat aagtttgtaa aagggacata
      481 catcatcact ggcaaaaagc aggacgtaaa acaacatctc tccgctcagc tcccttaagg
      541 ata
//
LOCUS       KCOD01000615             654 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 68769pyr ultra-conserved element locus
            uce-4248, sequence.
ACCESSION   KCOD01000615
VERSION     KCOD01000615.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 654)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="68769pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>654
                     /note="ultra-conserved element locus uce-4248"
BASE COUNT          212 a          117 c          115 g          210 t
ORIGIN      
        1 gcttcggtgg aagagtacac aaatacctac ctacagtaag ctgagcagga gttactcaaa
       61 catatgtaag cctgtaaaat ttagccacag tgtaaatatg ttattcctgg gacaagaatc
      121 tggcagagta cggaaaagct ttagcagttg tattagtaaa cctgacagac ttgagaaagg
      181 agtattgtat ccttagaacc acggctgcca gaatttaatg tcaacaatta aaatttattt
      241 tgatccttac ctagtgttta ttactgtttg tatacacaac agaccttact aatacagaga
      301 tgcactatta gatggaatta ccatctgttc ggagcgaaat gctggcatct gtcttcgagc
      361 ctaaaactaa aatgatatta tttcaaacaa aacaaaatta actgctcttt acttaccaac
      421 ttcatttttg tgtacatgtg tgtgcctaaa cacatgggaa aggcttattt gtaatgacct
      481 gtgtagcaac atctatattt agatatatga cttcaacata agctgtatgg accatctgtc
      541 tttattggtc ttttctgtgc cctctgctac acaatggcat gcagcaatca tgggctttta
      601 aatactgttt tagccttata atatattaaa tatgtattat atagcaagac atta
//
LOCUS       KCOD01000616             722 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 68883pyr ultra-conserved element locus
            uce-4592, sequence.
ACCESSION   KCOD01000616
VERSION     KCOD01000616.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 722)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 722)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..722
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="68883pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>722
                     /note="ultra-conserved element locus uce-4592"
BASE COUNT          246 a          118 c          172 g          186 t
ORIGIN      
        1 cataacatac ctggtgcctt tggatggaaa agatttgggt gggaaggaga ccaggcgaga
       61 gaggaaagaa cagggggttc tgggcaatgt ataaatattg agtatgaggt tgtacaagct
      121 gcacaaactc cattaaggaa aggccacaga tagacatgag aatggttaca gagcttgtgc
      181 attatctcag ctctactaaa atgaaaatat acagtacaaa caaaagatct acagctttgt
      241 gaagagattg ggagagagag gacaactgaa tgttgggctt tgcaaatgca tgcaacaaaa
      301 aatcttttct tccctctagc cattgttcta ttgtctttca aaggccatta aattgaacag
      361 caggttgtga tgaaaatttc attaagacct agttaaatca ttatgagggt gccatattca
      421 tgtctctgct tactccccaa aaaatgaata ggaaagagtt gagctttctc cttaaaagcg
      481 aactaacaaa agttcagaag ttagaagaga atgggaaatg ggacatgaaa caaaaggagg
      541 ccagagaggt gagctggcta ggaagaaaat tagacttgca taagagcatt gaaaggtagt
      601 gagggacaaa tacatcattt tgacaagcct cccccttccc ttcagccaac atggttgttt
      661 ttagagtggc taattatata tatttctggg tgcagatggc aagactgttc ttaaaggtcc
      721 tc
//
LOCUS       KCOD01000617             398 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 68987pyr ultra-conserved element locus
            uce-5953, sequence.
ACCESSION   KCOD01000617
VERSION     KCOD01000617.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 398)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 398)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..398
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="68987pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>398
                     /note="ultra-conserved element locus uce-5953"
BASE COUNT          148 a           60 c           80 g          110 t
ORIGIN      
        1 tgatgtgaaa ttcctaatgg gttaaaaata aacagaagaa ggcaaaagaa accgagagaa
       61 acggtaatga cagttttgaa gtatccagta cctgttgtga caggaataac aaattaattg
      121 ggactataac ggattctttg taaaggtgaa gtaaacacac ttgactgtat atttttcacc
      181 atcagttaag tctcaattgg ttccaaaaat aaacagaaga cattgaacag ttttaatgga
      241 ttttgacacc taggtattat gctgtcactc cagtataaat gaatcataac tttagactgc
      301 gccaaggaat tactacacat ttggagaaaa tttatggtgc accgggcttt gaatcatgat
      361 gtgatatcaa aactaaagtc acaagaggaa agtctggc
//
LOCUS       KCOD01000618             544 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 69095pyr ultra-conserved element locus
            uce-4999, sequence.
ACCESSION   KCOD01000618
VERSION     KCOD01000618.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 544)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 544)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..544
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="69095pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>544
                     /note="ultra-conserved element locus uce-4999"
BASE COUNT          166 a          100 c          138 g          140 t
ORIGIN      
        1 aaacgtgctt caaatacatg aatatgcttc tgtagggtgt cccaggaaat taagtaaatg
       61 ctaccaaatt accgactaca tggaacccag gcggaccttc cagccatgct ttatgtttat
      121 ggtccgtgga agccgaatgc agcaccgtgt ttggccatgt gatggcggaa gaatgtttta
      181 tgagttcctc ttttttattc taatgtaaag atgtgtgtct agttctgcat tccaggaagc
      241 agacatagta agctctaagg acagtggtca tggagacagt gagcaaggag acagtgatca
      301 tgatgccact aatcgaggtc aatcctctgg taagtctgat aagagaatgg aaatagtgga
      361 tctttaagta gggagactag aaggaacagt tacaaggtga gcatgggaag tcagcttgct
      421 gctacagcct ggacaaggag gcaattgtca cggggcaata ctgcatcatt cacagtagcc
      481 ctgcacatta aaacaaagtt gttggtacaa ctgcagattt agggaatttc aaagcattaa
      541 gcaa
//
LOCUS       KCOD01000619             677 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 69204pyr ultra-conserved element locus
            uce-5570, sequence.
ACCESSION   KCOD01000619
VERSION     KCOD01000619.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 677)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 677)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..677
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="69204pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>677
                     /note="ultra-conserved element locus uce-5570"
BASE COUNT          188 a          168 c          158 g          163 t
ORIGIN      
        1 gtctgtccag ctcgtggcca acatctcctg caggagcact ggaagggatg ttacctcaga
       61 tgctgcacag agcctgtcct ccccactttt cctattgcaa agcctgggaa ccaaacacca
      121 ggcaacattg caccccctcc aaagtgtgca gtcaaggggc ttctgcacat ctgtgttgta
      181 acacacagga agtgagggga actgcagaca ccaaatcctc catctgcagc ccaaagcaac
      241 aatgttggag ggcaggaagg gtagagagaa tgtggtgcac acaatacaag aagtaggttt
      301 tgtgccaggc tcatcagtgt ggcagggtaa taaggtcaat gtgaaaacaa ctggaaggca
      361 cattccccag taaacatgtg ctgagtgaaa acggcccgac cttatgttgt agaatccaaa
      421 cccattgagt caattgccag aaaacatgac atgacctttc agattcagtg agcatcagtt
      481 ccaagagcag gctgccgtgc tcttttccat ttcactgctg cccccggagg gcctcaagtc
      541 acctgaaata atagcttggg ctcaaaatct gcactccttt aatgaaatac acatggcatc
      601 aagtctgacc ctggtggcag attttttata tgcttagctc aatgtcttta aactaagcaa
      661 ttgtgctttg ttttgct
//
LOCUS       KCOD01000620             823 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 69315pyr ultra-conserved element locus
            uce-3215, sequence.
ACCESSION   KCOD01000620
VERSION     KCOD01000620.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 823)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 823)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..823
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="69315pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>823
                     /note="ultra-conserved element locus uce-3215"
BASE COUNT          243 a          113 c          170 g          297 t
ORIGIN      
        1 tgtcatagat catttaattt ttaatcattt attgtaagtg gaaaaggtta tttaataata
       61 ttatcctgac agcaaaaaga acaacagttt tccagtatgt cctgtggtgt atgacggggt
      121 caatggaagc atctagagag cttcaagtac acaatctaaa ttaagattct aaacaggcat
      181 tacagatgct ggtaactttg gcaattatca ttttgtttgg tgaacagtag taaaacagtg
      241 tgcggtaaaa gtgtttagag agagaggata aataaattga acagttttgc aatgcaaagt
      301 ggtttgtggt gtttttgagg atttcttggc tcttgcttaa ctgctattgt gaagcctgga
      361 gcagattttc ccattgctaa tgccctagaa gtattaattc actttgatat gctaattaga
      421 gggcattatg caagaaatga gattaagtgg cagcatgaag ccatttgcct gtcagtaaat
      481 tgagagcttt agcatcagga ggagctttgt tttttctgag tttctcttgg ttttgcatat
      541 aaataaaatt gattgaaagg tctagagaag cttctagaac attggtggtt ctttttctcc
      601 ttctatgatt atttaaactt catgttaaag cctttctctg aatattaatt gatctaatgg
      661 gagatactga acatgaagaa tttcattgta ttctcagtta ctgtatctta acaaaaggaa
      721 agtattagaa ttctttgtgt catctgattt ttgtgggatt attttagata tatcttacag
      781 ctttgtattc taatgtctgc ctgctcacag ctcctgtgct gag
//
LOCUS       KCOD01000621             591 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 69423pyr ultra-conserved element locus
            uce-6352, sequence.
ACCESSION   KCOD01000621
VERSION     KCOD01000621.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 591)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 591)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..591
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="69423pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>591
                     /note="ultra-conserved element locus uce-6352"
BASE COUNT          199 a          100 c           96 g          196 t
ORIGIN      
        1 tttaccttac gagcagcaaa gttgcttatt tctgtactgt agagttcaac agaactatgg
       61 actgatagtt tcacaaggca tcagtcacac tttcacaaca ttttctgata taaatataaa
      121 agcttcattt taaaggataa ataaagcaac actattatct aaacagggta aaatttaaca
      181 tccttgtggt ttgtggaaat ttttgatgtg cctgctggct tttcaataaa aatcaattat
      241 gccttaaatg caagcggtag tcaacatact acagactata aattcaattt catactcaga
      301 aatatggatt agctgaactt gatgcccttc cattgatttc agaaagcaaa agctgataag
      361 gtaaataata gtaagaagct ctctgacact ccacatcaag ttccggattt ccatattatt
      421 tttgtaagaa ctttccagcc accacaatat cctccttgtg aaatatgtat gatgaataga
      481 tattatatgg attgctgatt catctctatt tacagaatgg atatttggct tttataatgc
      541 aaggtgggaa ctggatagga aatgaatata cttatttctt ttagcaccat g
//
LOCUS       KCOD01000622             632 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 69532pyr ultra-conserved element locus
            uce-7104, sequence.
ACCESSION   KCOD01000622
VERSION     KCOD01000622.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 632)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 632)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="69532pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>632
                     /note="ultra-conserved element locus uce-7104"
BASE COUNT          201 a          113 c          106 g          212 t
ORIGIN      
        1 tatacagctg catgttcatg gctttattcc cttatcaaaa cctgtgaaat gattttgatg
       61 atgcagaaat caataaaata tttacttaga ggctttgcac ctgcatttgc aaacttcaaa
      121 gccaaaacat acaaactacg attatatttt ccaaagttag ttttttctct atgacactag
      181 tggtatatgc aaataattac ttttattctt tttgatacaa tttcattatt tgcattgcta
      241 ctagtggttc accaataaag gcgaacatca cattaggatt catgacagtt ttcacattgt
      301 attatcaata tgtggaaata attgtctgct ccgggattaa attacattat tgtgtatctt
      361 tttcatgcct aataaataat gatggatggc ttttattttc atcaccacct gcaaccattt
      421 agtcacccct tgattgttga agataaaata ataaaaagca agtgttatgt tgcaagcaaa
      481 agaatgcagt caaaacagtt gcatgcctcg tgtctctgtc tacctttttc cagtccctaa
      541 agagtaatag ttggtgttct gggaaggctg gcaacctgca aactggcaaa cagttctcat
      601 aaattgggca agggggaaaa atgtgcaaaa cc
//
LOCUS       KCOD01000623             421 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 69640pyr ultra-conserved element locus
            uce-3417, sequence.
ACCESSION   KCOD01000623
VERSION     KCOD01000623.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 421)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 421)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..421
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="69640pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>421
                     /note="ultra-conserved element locus uce-3417"
BASE COUNT          130 a           66 c           73 g          152 t
ORIGIN      
        1 tttttttgcc taactgcttt tattataaaa cttcttatca aaaatattgc actacattag
       61 tacaagaatt ttgtaatgga atcatgggag acgtttctgc ccagatattg cattttgttg
      121 ggccttgttg ttgaagagga aggaacaact tgatcgagtt tattatggct tagtgatttg
      181 ctgattgatt tcatttgctg tcagttaaag ctctcttaat gtcaagcttt ctttgcataa
      241 tgccttgttt ttcagattga tgctgcttac ataaactgac cctgatttgc ccttctgcat
      301 gacaatataa gtgacagcag ttagacaaaa atatagcaat gaatatgcaa cttaaggatt
      361 aagaaaaaac ctttcagaat ataaaactag gcattctctt atttcattga agaaatagac
      421 t
//
LOCUS       KCOD01000624             563 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 69750pyr ultra-conserved element locus
            uce-778, sequence.
ACCESSION   KCOD01000624
VERSION     KCOD01000624.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 563)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 563)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..563
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="69750pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>563
                     /note="ultra-conserved element locus uce-778"
BASE COUNT          185 a          113 c           99 g          166 t
ORIGIN      
        1 caactaggaa ttactattgc tactggtttc cacagaaaaa ggccattcag cacactttta
       61 atttctggct atcttttgat gaggcaccca gtactgactc agcggtgctg gaccttcact
      121 gggggcccag aactctgcag ctgctctagc tctgcatttg cctagagcaa tgtgccagct
      181 gtctctgact gtattacacc acagtaatgc gaacaactgg aagcaataat gtgtctcccc
      241 atttgcctaa caataccaac atgaacaata attcagaaga ctgaagattt gtgctgtaat
      301 ttaataaacc ccatgcacat ttctacaatt gagtatcaca tctgtgcaat ggatcctaga
      361 agtgtaatat tcttttataa gggaccatta accaatctta agtttatagg tttccttaaa
      421 tctttttcat cagctgttaa actacagtaa agagaaaatt gcctcttatg agacaaggga
      481 tagtaaaata caaagactgt gattaaacgt caatcaatta aggattataa tataataaaa
      541 atgctgactg atgattaaaa tga
//
LOCUS       KCOD01000625             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 69859pyr ultra-conserved element locus
            uce-5068, sequence.
ACCESSION   KCOD01000625
VERSION     KCOD01000625.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="69859pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-5068"
BASE COUNT          169 a          130 c          138 g          203 t
ORIGIN      
        1 ttctcattgg taattgcaga gggcaatatg catgggttta tagagccaaa cctgtttcag
       61 caatcttata gagccctctc aatttaagca caattgtttt tctttcagta ctgctaagag
      121 gtaagtgcca ggatttagca tgtatgacat tgtctgaggc atttgttcag ctgtctgttg
      181 aatcccctga aactaatgct tagtctctat taaagtctca gtccctggaa agcagagccc
      241 attctctcct ataattaatc ttgcaggtac tgccttgaca ttattggttc accagcagag
      301 cagaactgcc ccagccatca ataataattc agcacattag gacaaggcct acgtacacag
      361 cccacagatg tagccgagtt gtgtgcaggc tccagcactc tttgctgatg gcaaaaagaa
      421 ggtcagaagt gttttggtcg ctggataatt ttgcaataca aaggtcgtgg tgttactcat
      481 gctttggctt tatgtcttca aatgttggca ctgtttggca caatgcttgt gattgtctgt
      541 ttactgaatc tttatactaa agctgttaca aattggcttt cacagatggt gggagcttct
      601 cagatcaaga gaggcaggga atttattact caatatttct
//
LOCUS       KCOD01000626             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 69968pyr ultra-conserved element locus
            uce-7965, sequence.
ACCESSION   KCOD01000626
VERSION     KCOD01000626.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="69968pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-7965"
BASE COUNT          180 a          171 c          110 g          173 t
ORIGIN      
        1 ctatcaacat gcatggtttg acatttgcat tccaattaac atggcttgtc ttttactagg
       61 gatgtaccac acgagtggac cttggctttc ccatcagttc tttgatggct ttaaaccttg
      121 atttatttta atattggcac agacattaaa atgcacataa ctgagccact cgtttatgca
      181 tataacatcc agagactttg gactccagct gcctgcaccc ctaaccatgt gctacatttt
      241 tcaccaagtt tctctgcccc ggtgctgccc tggggcctct gacagccctt tccttttccc
      301 agatccgcgt cgtgaaggca ttccgtagct ctctctatga aggtttagaa aaaccagaat
      361 ctagaacctc tattcacaac tttatgactc atcctgaatt taggatagaa gattcccagc
      421 cccacatccc actcattgat gacacagacc tagaagaaga ccctgctctc aagaaaaact
      481 cgagtccacc gtcctcgctg aacaagaaca acagtgctat cgacagtgga atcaatctta
      541 caactgatac aagtaaatca gctacctctt ctagtccagg aagcccaata catagcctgg
      601 agacatcact ttagctgaaa aggtcactgc aaaa
//
LOCUS       KCOD01000627             869 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 70075pyr ultra-conserved element locus
            uce-1311, sequence.
ACCESSION   KCOD01000627
VERSION     KCOD01000627.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 869)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 869)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..869
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="70075pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>869
                     /note="ultra-conserved element locus uce-1311"
BASE COUNT          270 a          185 c          156 g          258 t
ORIGIN      
        1 aaacaaacct tacagtcata tcacttccac cagctggaaa gaaatcaata caaacttttg
       61 tcatactgtc tatatgtaat tgatatacag taaacaaaac tgaatttaac caaagatgag
      121 aaaaaacaaa ttcacccaca aactcgggaa atttgtttgg agctcatatt caacctttta
      181 tgttctgctg cttagcatcc ctctcctacc ccaaccaatt aagacgaaca ctatatttct
      241 cccctccttt ttcggtcaaa gaatcttggc acaaccagca caaacaaact ttgctaacag
      301 ctttaaactt ggaaggcccg ctttttaaat atttgccgct acataattga aacagctgtt
      361 ttaatgagat acctactgtc atcattttac cctggctgag ctgggtgaca acaaagcagt
      421 aataacgaat tcaataataa ttaactcggg tcatctgctc atctgtcatg gctcatcagc
      481 tttagggaga aaaatcccag tgaacttctc tcttttgtga gctttccaaa actctgcaat
      541 aaaatgctta gagaggactc taggtagccc ttcaaaagtt ctaagcaaac tggtaagtag
      601 gttaattaaa ttttatgcat gtttaaatgc taatgattac attcctaaca ttacagtgta
      661 atctgttatg gaatgatgtc atgcaagcag tggtttttag tgcctaacac atttccatcc
      721 tgatgtggag tagctctgga tcatttgtcg gagggcagga agttgacagt ggtgtttcgg
      781 agccaggctc tccctctctg ttgaatgtta agcaggggag ttacagaaag ccactgattt
      841 tatgcctact gccacatcac agagggtga
//
LOCUS       KCOD01000628             706 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 70187pyr ultra-conserved element locus
            uce-3334, sequence.
ACCESSION   KCOD01000628
VERSION     KCOD01000628.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 706)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 706)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..706
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="70187pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>706
                     /note="ultra-conserved element locus uce-3334"
BASE COUNT          182 a          169 c          139 g          216 t
ORIGIN      
        1 actgcattct tgaactgcaa tgtattcatt tgtgggcagt ggggcagcca gtgggagggt
       61 attgattgga gtataatgtc atgtgtagca gagagagtaa gatgaaaagt gttttctgct
      121 taatgggttg gtattaagta ggtgggaatg gcttctaatt agccaacaat tgctgtgttt
      181 ctcagtttcc ctcccttccc tcctcctgtc ggtcaccagc tgccaatctc tctctccttt
      241 tccttgtgtg gagttcattg ctcactgcag tgaaagcctt tgtttaaaaa agagggctcc
      301 cagggtctca tctgccaggg tacagcttgc tgcctgcgat gagtagcaac tgtcagttta
      361 ttttatctca accttttcat cattctgctg aaactggtcg agtgaaacca cctgagagac
      421 ctgaggattc agtacctaca agtcattagc caggactgct cagtctctcc ccacacagca
      481 agtcaactga acactgctta aaatatagtc cactttaacc ccatattttc ctacggacgt
      541 attaggacca tcttccacat tgcatgatca ttccttttag aaatacaaaa tataacacag
      601 taaaatatag aacagcctca gtctgaacct cccccttatc taggttatgt tctccagcac
      661 aaatatcata cctagcaact caattatttg aacctctgct tgcctt
//
LOCUS       KCOD01000629             818 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 70297pyr ultra-conserved element locus
            uce-2782, sequence.
ACCESSION   KCOD01000629
VERSION     KCOD01000629.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 818)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 818)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..818
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="70297pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>818
                     /note="ultra-conserved element locus uce-2782"
BASE COUNT          246 a          137 c          161 g          274 t
ORIGIN      
        1 tcatggtcaa aggtggatgt tatcaaggca agacactttt agccagaact taatgtaata
       61 tgcaagtgga gcttctttgt ttcctatgct atctgttgac attccctagg taccaaaaga
      121 aaattacagg gatagacttc tactgttatt gtctcagtga taggtcatat ctccaaacaa
      181 actgtatgag gaaggttatg ttttggaata acatcctgtg tttttgtgct taaccacttt
      241 tcattgatgg tctgaagttg cattgtatta acacgaagta ttttacagag ttaattgata
      301 ttccaggttt gtccgaggga aaatctacag ctccccacaa catgcttgac aagttattat
      361 atttacttta gtcaaagccc gagtgtgcag tatccctctt ggaggtggtc tattattgga
      421 gtcccatatg ctttttgttt gggaagaaag cagtcactgt gtcatactgt tacacagggt
      481 attctttttc aaggatgttg ttcccttggg gaccatatca tgccagagtt cctaagtcta
      541 ataagacctt tgtagctctt attgtgtcaa agttctggga gggaagcaag agttaaacag
      601 aaaatataat tcaagcaact atactagacc acatgttgaa aaatatcact gttcaaactg
      661 aaaagcaaag gcttcaaaaa gattcctgat gtgtttttgt ttcttaccaa ttaatcaaaa
      721 atggcgatct ttgtagaatg tctggtttta ttaaagtaat taaaaatata tcagcagttc
      781 catgtgcttg tatatcacaa gtcttcaaaa gaagtgtt
//
LOCUS       KCOD01000630             558 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 70402pyr ultra-conserved element locus
            uce-7071, sequence.
ACCESSION   KCOD01000630
VERSION     KCOD01000630.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 558)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 558)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="70402pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>558
                     /note="ultra-conserved element locus uce-7071"
BASE COUNT          175 a          139 c          106 g          138 t
ORIGIN      
        1 gccttgaaat ggctcagcct tccaactcct aggaaactaa tttcctacta atctatttgt
       61 ttaaaattag catctacaaa gataactctg tgagcagcct ggactttgat ttggggagta
      121 caccccagaa aactgtaaat gcaggcactg ctttcctttg catccagaat tcaacagagc
      181 tgtcagatag cacatgagag atggttaata ataaattaaa aacatcgcag ccacagggaa
      241 actgcatctc tcccctaaac tcccctgctc ttttgctttt ttctacccca tgggcttaat
      301 cagcatcaaa gagtaacaaa tccaataaaa tgcttccctg agccaggaac cagcctgaac
      361 tggatacaca cacacacctc tccccctgag cccctttgca aaacagctga cagttgaggt
      421 ggagatagaa caaaggaaga gatggggaat ggtaaatcac agagaatctc tcatctggca
      481 ctggaaagct ctaacaggcc tttttaggct accggtacag aaagagcttt tcttgctatc
      541 ccaccaagat cagagatt
//
LOCUS       KCOD01000631             623 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 70509pyr ultra-conserved element locus
            uce-18, sequence.
ACCESSION   KCOD01000631
VERSION     KCOD01000631.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 623)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 623)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="70509pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>623
                     /note="ultra-conserved element locus uce-18"
BASE COUNT          148 a          125 c          124 g          226 t
ORIGIN      
        1 tttcctcttg ccctttcttg tctatgtcag cactatgcta gagcagcacc aaagtggtta
       61 cttttaacta ttctgcttta tatgtatctg tgggcctctg ctggatttgg gcaaagttag
      121 ttggtggctc agcttcgtgt aattgaaagt cattctgatt tctgcactgt ggtgtaattg
      181 ctcacatgtt atttgatgat taagattctg gagtgaattg tgttcttttg ggttcttgca
      241 ctgtttctcc atcagggact tggtttcagt ggtgtgcagc tgctggagtt gatttacagt
      301 gctgcggctg tggctagtca taaataaatc ctcttatata gttgttatga acacctgtta
      361 gatcatctgt cagcaaagcg ctgttcacat ttatcatggt gcggtagtta ttttacctca
      421 atccatttcc gactgactcg gcctccatca ctggattact attaccacac cataatcgct
      481 cgtttccact ccatgttaca acttgcagat aaaagatttc actacttggc caaatttcat
      541 aaataaagga gcagttcagt gcagtaaaag tttatttttg tcatcatttg tcaccccatt
      601 attctataaa tcaaatggaa tag
//
LOCUS       KCOD01000632             499 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 70613pyr ultra-conserved element locus
            uce-645, sequence.
ACCESSION   KCOD01000632
VERSION     KCOD01000632.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 499)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 499)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..499
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="70613pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>499
                     /note="ultra-conserved element locus uce-645"
BASE COUNT          165 a          106 c           82 g          146 t
ORIGIN      
        1 atggcatccc tgagcatcaa tcacaccagt ccagctatct caattaaccc ttagttaagc
       61 tgggacctcc tggagtaact gaaaagaatt tgagggaata agagatgcta tctgccacaa
      121 ggattaccat tctacatgcg gatcaaagac aattccacat tttaccctag tgattagctg
      181 taattaaata aagtaagtct gtttaaactt cattagcagc aagacatttg ctacagcaga
      241 gtgggcacaa atcatccatt cttaattaaa atataatcca caggatgacc ataatcttct
      301 tctaaaagta cactctttcc ccctgaaaga tttcttcatc aaataaggat aaataacagt
      361 ttctctctgt ttaagctatg aaggaatgga tgctccttcc catttgcttg aatgagtgct
      421 gaatgtgcct gataacatca ctttggcatg ctattatcta aaatggtaga atacctcact
      481 tcagcaaagt ctgacataa
//
LOCUS       KCOD01000633             710 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 70722pyr ultra-conserved element locus
            uce-6500, sequence.
ACCESSION   KCOD01000633
VERSION     KCOD01000633.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 710)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 710)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..710
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="70722pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>710
                     /note="ultra-conserved element locus uce-6500"
BASE COUNT          198 a          156 c          141 g          215 t
ORIGIN      
        1 tgttaaatca atgatcataa attagggctc tgtttttaca gcaccttgtg ggaaatggtt
       61 aaattaacca gctgcagcaa tgagcacctc ccacaagatc atgtcaaaag ttctcccccc
      121 atacaccacc aaaaagggga aaaaggactg gattatttgt ttttacctag cacacaaaat
      181 ggaatccctc catctatccc tgctaattcg tgtttcaatt gtacccagct gtttaaattg
      241 cactgtgcag agattgcctt gatccccagg tgctggtact ccatctgtgc tgctctgaga
      301 gactatttac agccgaggtt aggccagtga ttgctgggac ggaaaactca tttctcagcc
      361 tggcttttat ttacactctt attaaagatc ctttcactca tgttggaatg gcagctagtg
      421 gctgcagtaa gcgcttggca ttgagccaag cagcgaaatt accatgttga tgaaagatag
      481 cctgcttcca ttttaacctt tcactgttcc cccctttcca tctatatttg catgaagaag
      541 gatgattatt gaaagagatg ggggacaaag ggaggagaga atccttgcaa ctaagctttt
      601 caagggataa accaatggtt tgtgaccaat tttgaaaaat ctttactgcc ttaatttcct
      661 actccttttc ctgaattgct attagagttt attttcacat gacgcaacag
//
LOCUS       KCOD01000634             581 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 70833pyr ultra-conserved element locus
            uce-7751, sequence.
ACCESSION   KCOD01000634
VERSION     KCOD01000634.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 581)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 581)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..581
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="70833pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>581
                     /note="ultra-conserved element locus uce-7751"
BASE COUNT          177 a          113 c          116 g          175 t
ORIGIN      
        1 tacattgggc caggaagaaa ctgaataatt atacacattt aaaaaacgta gctttgtaac
       61 ttgcttttgt ctgatgcttt cactactgca gaaatggtga tggggttatt tacgtaagtc
      121 gtttggcttg ttgaaaaaaa atatgcccac actcctctac ttaatgggat tctttcctcg
      181 ttgcagtgca aacggctgga gcaggagctt catcatctga aagagcagaa ccagacttca
      241 gcaaacaaca cgagacatat gactgctgaa aacaatcaag aacgtgctct gaaggtaaat
      301 ctccatttct tcttgcaggc aaattaaggt tgtaagcccc tggtgccagc tttctgggct
      361 gcatatatca gttgtgtaca tttcggcaga agtgagctat ggtgtttgcc aacaactgct
      421 tctttaaaca cagatacagc acccttctgt tatggtttta ttttattttg cgtatgaaag
      481 caacaaaata acatatcctc caaattattg ggctggtaat taacactaaa ttctagagat
      541 ctgtccttgc aatattgtat aaggtgaaga aaactgcaac t
//
LOCUS       KCOD01000635             670 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 70943pyr ultra-conserved element locus
            uce-976, sequence.
ACCESSION   KCOD01000635
VERSION     KCOD01000635.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 670)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 670)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..670
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="70943pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>670
                     /note="ultra-conserved element locus uce-976"
BASE COUNT          188 a          116 c          112 g          254 t
ORIGIN      
        1 tgtattgcag ttggcagttt tctaaagaaa aatttgttac tttctagatt gcatttgttt
       61 aatcacagca atcttgcata ttttgaacaa gtatttgtgt taccatattt ttttaagaag
      121 agaacaattg acttttccag ctcaagcata ttaaaagctt agtcaggtgt atgctgtatc
      181 tggttccctt ccagttttaa tgtataaatt ctctttttaa cgttccaggg aaaagcaatg
      241 gtatttgctc cactccgagg gaatacttta aaccagtttt gcaatctagc tgaaaaagct
      301 ggtttctcta tccaaagaca tgaaaattat gatgaacaca tttcgaactt ccactccaag
      361 gttagttttc tgcttgtgtt agataacact ttaatccgca ttgcattttg aagagatcat
      421 ggtccttttg gcaggtaacc taaatgtttg attaaagtac tccttaggtg tgctgcttct
      481 gaacagctat ttttgtatct gattattttg tgtggtagag ccatccttta tctctgcacg
      541 tctagaagag ttttaagcat ctcctgttta cccttttcat tcatagaaat ctaatttatg
      601 agagtctttt cttgttgtta ttagctgcct ataaatataa gcatttacat tttaataaaa
      661 agcctgcaac
//
LOCUS       KCOD01000636             636 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 71055pyr ultra-conserved element locus
            uce-225, sequence.
ACCESSION   KCOD01000636
VERSION     KCOD01000636.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 636)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 636)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..636
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="71055pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>636
                     /note="ultra-conserved element locus uce-225"
BASE COUNT          247 a          118 c           97 g          174 t
ORIGIN      
        1 aagctgtgtt tgcagaagtt caggaatgag ctgtacacac tgaggagctg ctccaactct
       61 ccaccttttc tgaatactgg catctcccaa aaaagagagc tttcagattt aattaaattt
      121 tactatttta tttgtgaaaa aactacaagc agaattcata aatagacatt tctatttaaa
      181 gcaggaaaat gataaagtgg cttctaataa cagtcgtgca catgccagta acaggaatat
      241 attaacatct tttatttgct agacaaagag cagtgtccaa tataaatttc ccaaaaacat
      301 ttaagacctg tgaatttctg accagttcac aaaaccacca ttgacacttt agcatgaaga
      361 ttaaaacaaa cctaacagga ctgtcagctc taaagacttt acagagcgga aaaacagaag
      421 cgttatacaa gctgtctttc tgggcaaatg aaaaatagag ctcgtataat acattaacat
      481 aaaaatccac aagataagat tatgttttga catacttaaa caagcattct atatttgtct
      541 ccaacaaaca aagctaagga aataatgtaa ccatctttac acagtaaatt aaggttacaa
      601 gtcatacaca agaacagaac tgcttgcgca ttaaaa
//
LOCUS       KCOD01000637             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 71163pyr ultra-conserved element locus
            uce-3306, sequence.
ACCESSION   KCOD01000637
VERSION     KCOD01000637.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="71163pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-3306"
BASE COUNT          151 a          136 c          128 g          187 t
ORIGIN      
        1 gggtgcctct gcaccaatgc taatgaagtg accatctgca atctgcatca aataattata
       61 agttgcctcc cctgactgca ctccatgtgc tggcacagcc tggtgggagg tgcagctcgg
      121 gctgcgggct gctggtgggg gctcggagga gcggatcatg tttatccctt caccacgagg
      181 cacacaacct gctgagcaga caggtgctgg ctgtgctgat gtccatgggc gatgaagcct
      241 ggttgtccta gtagctgaca tctatatcta gatctatctg ggtttttaaa ctgatacaac
      301 atgaagaatg tcactctctg ttactgtatg tgtgtatctt atggatatcc tttaagcaca
      361 atgccttgac catgtctgcc ctgctttctt cagctgatgg attttgccat tataatgggc
      421 tattgtttta atttatcctt cagttcaaat gcttctggac atgattacag ttagactctt
      481 tccccagaac aactctattg tttctactta tgctttaaaa actttagact taatcttaat
      541 aaaactcagc tattggaacc aaactaaatt ctgccttaac acattcaaaa actttagaag
      601 ga
//
LOCUS       KCOD01000638             671 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 71271pyr ultra-conserved element locus
            uce-3777, sequence.
ACCESSION   KCOD01000638
VERSION     KCOD01000638.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 671)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 671)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..671
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="71271pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>671
                     /note="ultra-conserved element locus uce-3777"
BASE COUNT          139 a          170 c          146 g          216 t
ORIGIN      
        1 tgtaggggaa gtgtttacct tgagtaattt aggacagatc acccgtggta agaggttagt
       61 ttatcataca catttctgct catctacagt tgccattgcc taagtcagct ggcagaggac
      121 ctttataaat tcctttgaga ctagagtcat gtatcttttg ttcctgtgcc agctttcttt
      181 ttccttctaa agacttctgc cccactttat cacgcttcca gtaacatttc attcctagac
      241 ttcttgcatg gtttgtattt gcttatgaac atcattatgc ccatctttct tagttgcttc
      301 tctgctggtt ctgcagggtc atccccaaca tcatctcaga atgccacgct gccttcatcg
      361 agtgcctggc cgcttagtgc ctccggctac agtagctctt tcagcagcat tgcatctgca
      421 cctagcattg caggtacggc ctttctgctt ccacagcttc tgcattccca ggaaaaggcc
      481 ctagagagtg ctctcccagt gcttacagga gctcaggcag aagtgtattt tgtgctaggt
      541 gcagctctcc tgtcagctct ggtgtgcctg gaactgttgg atttattcca cttggtgcca
      601 ctcagtccag ggcctcagca ggaagagctg gtgttgaatt tggaactcac tgttaaaagt
      661 gaaacgtctt c
//
LOCUS       KCOD01000639             428 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 71384pyr ultra-conserved element locus
            uce-198, sequence.
ACCESSION   KCOD01000639
VERSION     KCOD01000639.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 428)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 428)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..428
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="71384pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>428
                     /note="ultra-conserved element locus uce-198"
BASE COUNT          150 a           61 c           74 g          143 t
ORIGIN      
        1 aacatttgaa atgcagccaa gtagtcaaga aaagaggact ctgtgtcttt aagctgggga
       61 aaacccaatc attccaaatg tattgcttta gtcatctggt ttcattctat taatgacctt
      121 taacatctgc aaaaatattg tgagaagcta attttgtttg tactgaggtg gtgcagaaca
      181 gtttctggct gtcagtctag gatgtgttat aaaataaaat tgtctttctg ggagtctgac
      241 aaaaacctac tgtacagatt cagtttattt acaacagtat gaaatgaaaa gaaaacagaa
      301 ttttacaaca agccaacatt cagaaaatga atactactta tacatttata tatattttag
      361 taataagttt tcaagatatc cactgagatt aagggatcta ttttgtattt tgtggtattt
      421 cacaaaaa
//
LOCUS       KCOD01000640             588 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 71492pyr ultra-conserved element locus
            uce-7712, sequence.
ACCESSION   KCOD01000640
VERSION     KCOD01000640.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 588)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 588)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..588
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="71492pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>588
                     /note="ultra-conserved element locus uce-7712"
BASE COUNT          192 a          104 c           86 g          206 t
ORIGIN      
        1 tgacattgag ttattatttc acaaaggcag aagagagact gttattttat tcatttatat
       61 tccaactata ttaaacatgg tagtttaaaa cataagactc ccctctttga aactaacaaa
      121 atagtcaaat gcagaagaag ctattcaaaa ttgtctttta ataaaagttt aaagtcttca
      181 aaatatattt gcccctggag caaacttttt tcatttaata ttgtgtctgt taattagtgc
      241 ttcaaatttg caaattcttt attggtttat atcaatgtaa tacccaaagc tcatctcatt
      301 gccagctttg aatgaaatat gatcctgttt attctattaa aacgaaggct tgaaattgtt
      361 acccaaatgc cacaggaatt cttgccattt tctcatcaaa ttcctcatca gattttaaag
      421 tcacattgtt ttagattttg agccttggca tttaaatgaa attcaatgtg ccccactgga
      481 gaaaacatct gcagggacat attatgtaca atatccattc caatcaagca ggagtgcact
      541 gtgtgactga atgagaagct tattcttact ccacttaggt ttaccctg
//
LOCUS       KCOD01000641             778 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 71603pyr ultra-conserved element locus
            uce-3024, sequence.
ACCESSION   KCOD01000641
VERSION     KCOD01000641.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 778)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 778)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..778
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="71603pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>778
                     /note="ultra-conserved element locus uce-3024"
BASE COUNT          238 a          148 c          156 g          236 t
ORIGIN      
        1 aatattctac aatctgacac attttgttca tgcatatcgt gttcattttc tgtaactatc
       61 atagcttcca gcaaaatctt agtctagtcc aataaataac ataagtaatt catgataacc
      121 aaaataatta aataatagga gtaggttaaa gatcagcatt catttttaaa ttaaatttgc
      181 agtagttact tagaagattg gcaagtttta caaataacat caccaagcat tttagagaga
      241 aacacagccg cattagaatg gagtcattag gcaatacatt tattttgaag ccaattaacc
      301 ttttgtcaga gaaatgtcgg agctgtaatg gttttagcag tggaggtcag cctgtaacag
      361 aggcacgtat gacagcgatt acgctgtctg acatatgctg gagtctgaga gtacagccgt
      421 ggaatgagaa tctgccttcg tttgtattct gctctgcatt ttcagggagc aggcaatctt
      481 gacctatcca tttaggtaat taaagcttct atttggaagt gtcctgcagg aaggtgaaat
      541 ttgggggaga taaatggctg ctgctcactg tatccagcca cttccatcat ttgatggact
      601 gcctgaaaca ggctgcattg ccaagtcctc ataaaaatag agatgaattg ggcaggagac
      661 aattctctaa ggcaaagcaa ttctgtcatc ttccttcttg cagcatataa tttaattgtt
      721 agccaaggca gacagctgac tcaggggcct ttctctaatg actttcccac catcttcc
//
LOCUS       KCOD01000642             423 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 71706pyr ultra-conserved element locus
            uce-3398, sequence.
ACCESSION   KCOD01000642
VERSION     KCOD01000642.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 423)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 423)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..423
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="71706pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>423
                     /note="ultra-conserved element locus uce-3398"
BASE COUNT          114 a           78 c           86 g          145 t
ORIGIN      
        1 ttctctcttt cagaggataa aggcggtggc tgcccccaag gaagtgaatc ggtggtccaa
       61 agaaacggag agtggcaccc ccttctgccc caatggaact tcgaatggcg gattgatcaa
      121 gccaactcat atcattgtgg aaaccatgat gtgagctctc tctgtgagag gataaacctg
      181 ctttaactgc cgtttactaa ccatagattc tcataggacc aggtttacag agctttatat
      241 ttgcactagg atttattttt atttctcaca gagaaagtta ttttttgtgt gtgttttttt
      301 ttttaatatt ttgtaaggta atcacagcag acgtctctct gtagagggag agctttcata
      361 tcagactaga catattacaa gaatttacta ttattgggtt ttttatatat atatctttat
      421 ctc
//
LOCUS       KCOD01000643             319 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 71808pyr ultra-conserved element locus
            uce-1685, sequence.
ACCESSION   KCOD01000643
VERSION     KCOD01000643.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 319)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 319)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..319
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="71808pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>319
                     /note="ultra-conserved element locus uce-1685"
BASE COUNT          116 a           44 c           64 g           95 t
ORIGIN      
        1 atttcctaat gttaatacag tgttttattt aagctgcctt gacaggctgt ctaggctgtg
       61 ggaaaaagac tgagcaaata atgagtaaag ggtttagaaa aaagacagag ggtggagctt
      121 ggcaaacgat gtgagctatt catcaacaac tcaacaagga tgatggaaat aataagtact
      181 ccttaaagaa aaggggaaag gatttttttt aaagaaacag tttccaaaaa aatatttaac
      241 tctaactttg tattactttc tgattagctg attttaaact tcctgaaatc agcaaaagct
      301 tccctttgaa atggatagt
//
LOCUS       KCOD01000644             420 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 71917pyr ultra-conserved element locus
            uce-5427, sequence.
ACCESSION   KCOD01000644
VERSION     KCOD01000644.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 420)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 420)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..420
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="71917pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>420
                     /note="ultra-conserved element locus uce-5427"
BASE COUNT          129 a          100 c           99 g           92 t
ORIGIN      
        1 gaaaagatgc aaaacaaaat tgctaaactg caaaaaaaga agaaagggga gggagaagca
       61 aaaggccccc ttccctttgc ttattgagtt caaaggcata acatgcagca ccctgcagca
      121 aatgggaagc tacactaatt ttaaagccat aaaacgctat aaagtgccct gcggggcagg
      181 actacactgg agctagttgc acctaaataa gccatggttc atttacttcg cagcttagcc
      241 taatgtaatc atcagcagat tcctagccta gagttgtaac aggcacggag ccgctgccgc
      301 cgaggcgaca ctcccagcca tggaggggcc gccgccacat cgccgttgat tagaaaattt
      361 ttcagttttg acaagccctt aatgaacata aatcgctcct tgattggttt ccgtgtgggg
//
LOCUS       KCOD01000645             701 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 72026pyr ultra-conserved element locus
            uce-6780, sequence.
ACCESSION   KCOD01000645
VERSION     KCOD01000645.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 701)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 701)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..701
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="72026pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>701
                     /note="ultra-conserved element locus uce-6780"
BASE COUNT          228 a          105 c          146 g          222 t
ORIGIN      
        1 gtaaaatgtt gccgccgggt gatgggttat gctcgcagaa aggatttgaa cattcagact
       61 gcactgtgcc ctgacagagc ctgtgtgctt aaagacctgt tattttttcc tgactctgac
      121 tccgagtaat gtacttttta aatgattaaa catatcatgc tgtgacttct gaaatgtcaa
      181 caagcttcga aacttgggag acaggaatgt aataaaatag gtaatgggag attcaatagt
      241 taatagaggc cctgaagtgt gagtgtatac agtagctgta tattggaaac tgtgcaaatg
      301 aagatggctt agtattgcaa actgaggaag aaaattgttt ttaattagca ccttcataag
      361 aactgctgat taatactgtt tggtttggtg aaaagctttc agctgagtaa tttgtacagc
      421 cattacaaca gttttgttag accaggactc ctgttgttaa acacaaacag cagatgataa
      481 tggtggaaga tgagtttgtc atgtaacaat ttaccttatt gaaaaaagct ttatataaaa
      541 cccaatacag tagctactag cagaaatcac atattttaaa tcctttcaag attgcagtgt
      601 gcgatgctag tttttttcat ggaggagaaa cagattttat atcatttata aaattatata
      661 tacaatttaa aggtgttgta gcatggacag accactttac t
//
LOCUS       KCOD01000646             461 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 72133pyr ultra-conserved element locus
            uce-6069, sequence.
ACCESSION   KCOD01000646
VERSION     KCOD01000646.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 461)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 461)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..461
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="72133pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>461
                     /note="ultra-conserved element locus uce-6069"
BASE COUNT          125 a           93 c          104 g          139 t
ORIGIN      
        1 tatatacgca atgcacaaca aaatcctctg tctgaagatc catctttgct aaggtctgct
       61 acttgttaaa tcagtatgaa tatctgtcag agatatcctg ctacaccatt tggctgatgt
      121 caaacctaaa caaaccagat caaaaaacca gcaagtggca gaacataaat gaaacgggag
      181 aagaccagtc taactgtaac tcgcatggtt tgcttgctga tttttttggg ggagggggtg
      241 aggagggaaa tagtggcaat cactgcagtc atttgcagta ctaatgtcca attcagcctc
      301 ctttcattct cctgatttag gtggtcagag tggtttcgta gccgacacag ggaagctgtg
      361 ctgtttagca ggctgtttaa tgggaaactg gcagtcttat ttcttttcta gatttggttt
      421 gtcactaggt ctccattaca tgccactcag ctttgatgtc t
//
LOCUS       KCOD01000647             624 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 72241pyr ultra-conserved element locus
            uce-7314, sequence.
ACCESSION   KCOD01000647
VERSION     KCOD01000647.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 624)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 624)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="72241pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>624
                     /note="ultra-conserved element locus uce-7314"
BASE COUNT          187 a          152 c          101 g          184 t
ORIGIN      
        1 agacacacaa tctttgcaac caacacaagg gcttgtggca aggtttccct tactttcaaa
       61 aggcacatca ctaaggtgga tttgcttgtc cctgctctaa tgtcatgaaa gctgcccatt
      121 atctcaccca caggtaccgt ctcagttacc tcattgcagg gctctcactc tgcgagagca
      181 agtgttgcca agagatttcc attgcaattt tcaaagtcac atcaaaccga caaaacatca
      241 caacgtattc agcgccgcct cattcaaacc gtttaagttt ccactgtaat taaccctatc
      301 ctcgttaaga taattatgat caagctccct gtcacagcta atatcacagc atcattgcct
      361 atggctcacg ctttgccctc attagcttac aaaaacactg cgctaaacag gaaactgact
      421 ccctctgcaa aatgacttaa gatgttctgc aagtagacag taaataatcc tttagaatat
      481 aaaggtctca gaaatgtcat tttatcctgg ctaatcagta tgatttcttc cagctttcct
      541 ttccataatt cattcatggt ttataacaaa gttttaatca taaaggaatg tcatgacaga
      601 tgtgtgtatg catggtaatt gtca
//
LOCUS       KCOD01000648             332 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 72350pyr ultra-conserved element locus
            uce-7789, sequence.
ACCESSION   KCOD01000648
VERSION     KCOD01000648.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 332)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 332)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..332
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="72350pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>332
                     /note="ultra-conserved element locus uce-7789"
BASE COUNT          100 a           75 c           53 g          104 t
ORIGIN      
        1 tttatatcaa tcccctcatc tagattctta gacacatcaa tgcttaaaat gcagtcacct
       61 gacaaaaaca gttctaatta ttaccccctt gggctaacat ttttcagagt gactggctaa
      121 agtgcacccc agctcataat ttttatctct gacagtggaa gacataacct agtttcctct
      181 actgctaatc tagagggcaa gacccttttc cgtacaacac tgaagggaga aaatgcaatt
      241 tgagcacagg gaaattgccc acatagtttg atagttctac tgttctcacc ccaggattaa
      301 atgtcttgtt ttattttatg ctaaattatg ac
//
LOCUS       KCOD01000649             783 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 72454pyr ultra-conserved element locus
            uce-5796, sequence.
ACCESSION   KCOD01000649
VERSION     KCOD01000649.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 783)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 783)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..783
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="72454pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>783
                     /note="ultra-conserved element locus uce-5796"
BASE COUNT          273 a          149 c          116 g          245 t
ORIGIN      
        1 catttggtac tctattgaag agacatactc acaacatgag ctacataaac tcattctcta
       61 aatgggaata tttgaagaga tatcaagtac agatgtttca aagtagaatt taaggtctcc
      121 atgggtgtcc ccaactggtg atcactctat tataagctta actcttcaca gacagagttc
      181 agattccaac ttacccaact ttgcatcaaa gaaaaataac tgtttcgttt caacagttct
      241 ttgcacccac tacctaaaac aaaccatgaa catatgcaat ttcactgccc aatcctttct
      301 tataccctta caacatttgt tctgttaatg taggttaatt ctgcaaataa cacttctgta
      361 aattgttctt gcaaactgct acatcattta tgtaaggact tctgtgaact ttgaaaaatt
      421 aatgccttta attttggttg atggcaacat cagcagagct ctgtaaattg cactttaatg
      481 agattttgct acaggggata atctgctact gacagagtaa catcttgaaa acatctgtag
      541 acctataatt tttctatgac gattagatcc caccacaaga gtccaaatac agtgcagaaa
      601 taaaggaaaa aatgtaaatg aatatccaac ctgttcttta aaaagaagag agacaccatg
      661 aaaagtttca tgcactgaaa ataaatcaat ttttctgact aattaacatt tagctttatt
      721 taattaagaa agactattac tgtcttcact gctgtgcatc tgtatataat gaaggaaaca
      781 gca
//
LOCUS       KCOD01000650             808 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 72563pyr ultra-conserved element locus
            uce-958, sequence.
ACCESSION   KCOD01000650
VERSION     KCOD01000650.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 808)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 808)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..808
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="72563pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>808
                     /note="ultra-conserved element locus uce-958"
BASE COUNT          254 a          149 c          150 g          255 t
ORIGIN      
        1 tgcgtgcctg ccagtaatgt gatcatggta atgagaaagc tttttaagca aataatccat
       61 gtggttttga taagtaaaca acaaataaac tggtgagaag ctcctttgac tttcaggaaa
      121 ggtgagatgt tataggttca ttaatatgta aagggtagta tgtagatccc aatgaaagtg
      181 acaaacaagt gccacagtgg gtattgctga acacaggaaa tggttggttt gagctaatat
      241 atacttttgg cactacttca tcttaaaatc atacatagca tctagcacca gcaggttggt
      301 tttatagctt catctattac tttactgtca ctgttaattg tcttctttta cctctgcagt
      361 attctacaaa ttgggcctat ccaaagtgac aggaggaaga acattaagca tctgacaaga
      421 tgatatctaa gttcaatttc ctactcttta cctgatttat acctgcagaa gataattttc
      481 ctttctgtca taaacagccc tataaatcag cagtgcttat ggaaccactg catagagagc
      541 ccccagcttt gtatcctctg tgtttcctat taggaagcca ttactgcaga attttcctcc
      601 ttcaaacaaa aatgatgaaa tttaatacca ctgagattac aaagattaag agctgaagta
      661 ctgctggggc ttttcaattg aagcagctat ctgagcaatc tttgcaaaac tcaataaaaa
      721 cagggtttct gcctttgaca tcattatcca tctgtttgga tgaaattgct gtatcatggt
      781 ataaatctgt gatacaagtg acataacc
//
LOCUS       KCOD01000651             293 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 72666pyr ultra-conserved element locus
            uce-3628, sequence.
ACCESSION   KCOD01000651
VERSION     KCOD01000651.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 293)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 293)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..293
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="72666pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>293
                     /note="ultra-conserved element locus uce-3628"
BASE COUNT          111 a           54 c           63 g           65 t
ORIGIN      
        1 cacatggctg agaaatggca aggtgccaag atgaaactgc tcctaatttt cagaggaggc
       61 caccggctaa ttacacagac tgcaggtgtg aagagagaag ctcaaagtaa tcaatagtag
      121 taattaatct gctagactgg agctaaagag ctaacagctg gacatcagaa atggacacat
      181 gcaacaagat cagcaataat tacctcttta aatattgaat ttccatagca acaattaagc
      241 atataaataa aggcttgaaa tcaaggctcc gaggcatgat gctgaattgc aaa
//
LOCUS       KCOD01000652             667 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 72763pyr ultra-conserved element locus
            uce-6554, sequence.
ACCESSION   KCOD01000652
VERSION     KCOD01000652.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 667)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 667)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="72763pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>667
                     /note="ultra-conserved element locus uce-6554"
BASE COUNT          232 a          117 c          134 g          184 t
ORIGIN      
        1 gagaaagagt actgactatc aagttgatgg caacttgagc caatatatac attctcagta
       61 gaaaacactg tatgaaaaca aatctaagct aaaaatgtaa taagcagcct taacagttac
      121 atgttaagca gttcaaaccg tactccaaag acatagccac tgaataaaca agaagatagt
      181 atttctgaag tagaattaaa tagctcaaag cagttttcaa aaagcaaaaa aacaggggag
      241 aaaaaaaagc aaaccaaacc cttttaggga ttactctgag gagtttattt actgtgtctt
      301 ttccataaag gatatatgga aatcagagag ctacagacac cactcatggc ctgttttgaa
      361 attcaaaaaa gagggggagg gaagagaaaa ctatattgtc ctttccaggc agaaagatgc
      421 tttccatttt ttctcaccat gactgtcata gtaatctgat atgacaaatt cacatacagt
      481 ggattagcag ccagtggaga aagcctaagc ggttaatatt tgttgatgtt gcttttatct
      541 agcaggtttg tgtccctggg ctgtggttac cttggcaata cggatataac cattttctga
      601 agctgttaaa aatgccaagg agattctctc ttcaaaattc cagggcctgc gggctgcttg
      661 tcatttt
//
LOCUS       KCOD01000653             431 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 72866pyr ultra-conserved element locus
            uce-1679, sequence.
ACCESSION   KCOD01000653
VERSION     KCOD01000653.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 431)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 431)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="72866pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>431
                     /note="ultra-conserved element locus uce-1679"
BASE COUNT          123 a           75 c           76 g          157 t
ORIGIN      
        1 atatatatat tgacctacct ctagcatcat ttaaaggata taacaaaact acaattagtg
       61 ctgtgtaagt taatcttgcc ttttaagtta caaaagcatt gctgttttgt tattttattg
      121 atcaactttc atgcctttga aaatacaaat tccagaatga catcatgccc agtaggagta
      181 attaaagcta tctgatgagg gaatttagaa gttgaaaggg atgattgtaa ttgatcctga
      241 ttcaatccta ttacagcttt ttatagttta agctctagag aaagcaaact ccttgtcaag
      301 gctttatttt acgcattcct ttgtgtgtgc tgtgctctct actttccctt ttaatttttt
      361 ttttcctgta gtaaataatg agctgccgcc tgaaatccgg cttgccagtg gtcagctaat
      421 gggtgatgac c
//
LOCUS       KCOD01000654             718 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 72977pyr ultra-conserved element locus
            uce-7077, sequence.
ACCESSION   KCOD01000654
VERSION     KCOD01000654.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 718)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="72977pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>718
                     /note="ultra-conserved element locus uce-7077"
BASE COUNT          231 a          163 c          149 g          175 t
ORIGIN      
        1 agtagtttat taatcccctc acaacacaga aacaaatgtt cagccctgga aggagagtgg
       61 ggaagctgca gagtagtaac aaactcagca accctgtgac tctctctctc tgatcccatt
      121 ataaactaac acaatatttt tctccaattt tcagtctgta ttgcagctcg cagcagaaaa
      181 gatactgaaa gcagcaggag ccaggcagag gtgtcagact tcagagcgga cactgccttg
      241 ggacctgggg gggccagtaa atcagtgcac gcttgtcaac agctccaagc tgcaggaatt
      301 actcgagcga aaataacaaa tggctgtcat tgtggagcca aaaacctgtg attataatta
      361 tcacatcccc agtgaccttg cataaacttt aatccctctc caatggagca tttaaatagc
      421 ctgcatctac tggcagggga ccgtgtcccc ttagttgaaa atacagagag taggaaagaa
      481 acgagccaca aagaaaccac caaacccctc tgtgtcttac agcttgtatt aaagagttgt
      541 acaagaaaag ccctgtcact gtcattttaa ttgatattat atagtcatcc tgaattcaaa
      601 atgccacggt ggtgtccaaa ctcgctaatc ccagaagcat tttaatcaga tgaaaaggtc
      661 aaataacacc aagttttcat cactgcattc agaaagtggg tatacaaggt gtgtggat
//
LOCUS       KCOD01000655             646 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 73089pyr ultra-conserved element locus
            uce-1749, sequence.
ACCESSION   KCOD01000655
VERSION     KCOD01000655.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 646)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 646)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..646
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="73089pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>646
                     /note="ultra-conserved element locus uce-1749"
BASE COUNT          206 a           98 c          117 g          225 t
ORIGIN      
        1 ttctggtatc attcagaaca cagcagaatc ctggcgtgtt aaatctttta tgcagaaata
       61 atggtgtcaa ctttaacaaa tgttttatca gaagtcagct tttcagatat gcactatatt
      121 aaggtatatt aattgaaaac tactgctcct ttttagtaca tctccaaggt atcaatttaa
      181 taactatcaa agtagctagt gcagttgttg catttaaatt gatttacatg tcaagactgg
      241 cagtttagca gctgcgctat tattcctgga ttggtcaatt tacttgagaa aaacctacta
      301 ctgagttctg ctgacctgca tgacaatata ggccctattt ctattcctgt aattaggcct
      361 gcgactaact cagaatattt ttaattaaaa tattttggtc aatgtgttgc accaaattag
      421 gcctttcagt gcagatttaa ttctggaaat ggtgtgatta gaatatgtaa tgagttgtgt
      481 tcaatttaag attaacaggt tgtgcatctt gaacgtacag gtactgtaga gatttactct
      541 gaaaagttaa aaaaaatctg gtttgcgtgt ctgtggtaaa ttgatcaata cttaaataaa
      601 atacctcaga catactaaga tatttcaaga tatttgtgtg aaggaa
//
LOCUS       KCOD01000656             365 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 73195pyr ultra-conserved element locus
            uce-6668, sequence.
ACCESSION   KCOD01000656
VERSION     KCOD01000656.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 365)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 365)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..365
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="73195pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>365
                     /note="ultra-conserved element locus uce-6668"
BASE COUNT          108 a           88 c           79 g           90 t
ORIGIN      
        1 tgctcctcag actccaaacc tcgtgaagtt aaaagtgtga agcggggact gttccatttt
       61 ctctgtgtgg ccataatgag gttatttatg gtacatctag gaaagattaa aggttttcat
      121 aataaaggaa agcgagagct caagaactgg gtgcctccta acagcactga ctctcaaggc
      181 aggataaatc acccaagcaa ccattaaaac ttcaagaaga ttgcttgtaa acctccaagc
      241 aatgccagta aagcatattc cttgccacag agcagcccag atggtggagc tcagcagttt
      301 tagggctcct cacagttcaa ccctcctgtc tttttcctca gagggcacag tgccaatgag
      361 ccact
//
LOCUS       KCOD01000657             762 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 73305pyr ultra-conserved element locus
            uce-7135, sequence.
ACCESSION   KCOD01000657
VERSION     KCOD01000657.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 762)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 762)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..762
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="73305pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>762
                     /note="ultra-conserved element locus uce-7135"
BASE COUNT          263 a          154 c          128 g          217 t
ORIGIN      
        1 catttttaaa ccctgtccta taatttataa ccattacgta ctaatcattc atgatggaac
       61 tttcatttat aaaactgaat taatgtcatt tcgattatgt ctgtctcagg atattaaaac
      121 tgaccaccag gtttattcac tcactagcag ttaaacaact tactttcttt tagactgttt
      181 tacactgaac gttacagaag gtcagctact gacaagtaag aatgaaacag atgcacgtaa
      241 aaagaacata aatatggcta aaaaaatata ggtatatttg ctaagtcata tacttaccat
      301 tagcactgcg aagttactga agtgtgtact ctgaatggtg gtaatattgc ctgcagaact
      361 aattatgtgg cacccttctc cccaccagcc tccatgtcca tctagaaggt caaaatccca
      421 gaaggctgca atggggtcta taccccgtgc aaagtgcctc aatccgatag taagagggct
      481 ggtgaggttt ccaaaattgc acccatctgc aaaaggaaca aactgaatca gagagagtga
      541 tgagtgctct gtaaagagaa cactaaacta taaaaaccag aggacataaa atcttaaaat
      601 caaaggtagt gctcacatca gagaagtttg caatggtata aatctgaaca tttcaatcac
      661 ataatgtgtc aaaatgatct aatcacccct cacaaaagag atctttttta ttgtttcaga
      721 ttctccagtt acaaccagtg ttacactatt gcccatgcaa ct
//
LOCUS       KCOD01000658             792 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 73412pyr ultra-conserved element locus
            uce-1817, sequence.
ACCESSION   KCOD01000658
VERSION     KCOD01000658.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 792)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 792)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..792
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="73412pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>792
                     /note="ultra-conserved element locus uce-1817"
BASE COUNT          229 a          175 c          175 g          213 t
ORIGIN      
        1 agatttacag ctctcccaag ctgagggggc ttttaaggct ttactgtccc ctttggctgc
       61 ttgtctcgat atgtggaggg gcatataaag actggagatt aaaaaagtta tcatttcagt
      121 gtgggaataa atccagaggc aagggtgggc cacaggagcc acagcactga ctgccctccc
      181 agcctgggaa cgcagcatta atggaccata agtgcgcctg caatggcact ggatccgtgg
      241 cagctgtttg ttcaatgttt catgctttta gccacatctg ctccaaatga gtgttaatat
      301 tgcagtggca tccactaagg atgggctctg tcagctctgc tgagcgtcag gctgaccccg
      361 ctgacaagga aagagcagtt cagcccacag tgctccctct ccctccgtat ccatctcgcc
      421 tggctccgct ccatcagaaa agaaaaggga aaactaaggc agtggttctc aaggagaaag
      481 attgcattta ttcctagcac cctgtccagc aatgtcagat aacagtttat tcatcccctg
      541 gcccctgtat gacattgaag catatcaaca gtgacaaaag tatattgaat aattatcttg
      601 aaattaatac attatcccaa acttaaataa atgtcatctg atcaatatat cttggaatgg
      661 aaagggaaga gaatgtgaag ggcatcgctt cattattcat taattttaga gtaatgtagg
      721 cagatgaaat ggttatttca gagcactgct attatactca ctggcatttt aaataactcc
      781 caagatttaa ca
//
LOCUS       KCOD01000659             598 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 73518pyr ultra-conserved element locus
            uce-3264, sequence.
ACCESSION   KCOD01000659
VERSION     KCOD01000659.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 598)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 598)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..598
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="73518pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>598
                     /note="ultra-conserved element locus uce-3264"
BASE COUNT          166 a          121 c          140 g          171 t
ORIGIN      
        1 tttttattat taaatggata aaggcttccc catgcacttc cagtttcacc cactacctca
       61 tgctggcggt aaatagtctg caaaaaatgt catttgctgg tggattgttt ttctgtttat
      121 tggaggtgac atgagcagtg gggcagcggc aaagaggccg tgttgccatt gctaaatata
      181 catccctgac agtctgataa tgggttccag gaagttcagt ggaaaattaa aacaaagcaa
      241 catttatagc tgattgaact tgaaaagcag ttttcatgtt gaatggcaaa tatgtggact
      301 tcagcattcc aggagactga tgcagctcca ctggatgggc ctgaccttgt gtgcagaatg
      361 gactgtggac acagcagcag gcagaatggc ttcatctata gaggacttca tggggaggaa
      421 aaatttgcta tcgtgcacag aaatagttct cacatacgcc tatatttata cagtgtccac
      481 aggtctgaat agcatctttc gtatgagggt tttgcagcct gttagcacta caagaatgtc
      541 tggtactggg acggtctttg tccctgccaa agcactaaaa atacccttcc atctatcc
//
LOCUS       KCOD01000660             418 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 73626pyr ultra-conserved element locus
            uce-1430, sequence.
ACCESSION   KCOD01000660
VERSION     KCOD01000660.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 418)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 418)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..418
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="73626pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>418
                     /note="ultra-conserved element locus uce-1430"
BASE COUNT          144 a           78 c           80 g          116 t
ORIGIN      
        1 tttttttttt tcagcagctc caaatccccg gcatatgacc ttctgttaaa tagataaaaa
       61 aaaatttgct tatcagtcat gcaaatgagg ctgaattcat tttccacaac agatggcctc
      121 atagataatg atgatggaag agagaaaatt gaatgtctct cacaaggtgg tcatggcaac
      181 cgagagcaga ataatatcaa taataagctc actgcataat aaggttgtca atcccacaaa
      241 tcaaagtctc cagctaaatc aggtatccca ccccccgcta gttatcaggt aaatagagaa
      301 atagagagca tcctttttct ttttaaacaa ggcactatga aaagaaattg tagctccaga
      361 gcttccaggg tacaaggaga aggaaggagc agtaattgtg ttttatttga tgattctg
//
LOCUS       KCOD01000661             570 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 73737pyr ultra-conserved element locus
            uce-5192, sequence.
ACCESSION   KCOD01000661
VERSION     KCOD01000661.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 570)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 570)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..570
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="73737pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>570
                     /note="ultra-conserved element locus uce-5192"
BASE COUNT          151 a          120 c          155 g          144 t
ORIGIN      
        1 cttgccgagc tgcccttgtg gctgccagcc tgactttgag gtcctcatta ttgtgggttt
       61 aaatgaagga tgttcatcca ggcagggcgg gggaggccaa tagacatcgg tgccgttatc
      121 tggtccttct atcaggccaa gtgacaggct tctcagggaa gaatgcaaag ctcatggtgg
      181 agacctcagc ctgacacaga aggtgactcc cctgactcta accttgaaag gaaaaagttc
      241 ccactttatt aaaatgaatt tcgaaagggc cgctctgaca gctgcataat taaatattgg
      301 agtgtcagcg ataatttatt ctgctcgcat ttggtggtca gagcctgctc actgtagggt
      361 cagcaagcac agtgacagag ccaaggatac actggattac ggggcccttt agccatgcga
      421 gtgaaaggag aggctgtaat ttttatttaa atagagaaaa caaagcggca aggaggtgag
      481 cagtgctctc agtagcaaaa attgttaggg ataatgttgg aacttgtgct gaaatttgtc
      541 tggctccagg cactgtgaca gccttgcctc
//
LOCUS       KCOD01000662             740 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 73846pyr ultra-conserved element locus
            uce-65, sequence.
ACCESSION   KCOD01000662
VERSION     KCOD01000662.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 740)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 740)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..740
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="73846pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>740
                     /note="ultra-conserved element locus uce-65"
BASE COUNT          226 a          143 c          118 g          253 t
ORIGIN      
        1 tgtaatggtc tttaatggaa ctcttgtctg aatgctcttc ccaaaagtgg taatataagt
       61 gcaagtcctt accctaagtg tcttggtcta gactgaagca gaaactccag gtcagacata
      121 tggtgacaaa aagtgcatgt tatttattca catctcttaa tgtgaaatgt gtatttgaag
      181 agactagcca attactctca gtttttaatt ctagcaatac attttcattg ttctaagggt
      241 taaaaacctc accgtgacaa tgatgagcct tattactcag tcaaagtaaa tggatcacca
      301 tataaccttt cagaaatgtt cttccttaag ctattaaaac attccatgcc cttagatgac
      361 aacaatttct ctgccttttg aaatttcttt tctatcctgc agagttcata gagatatgct
      421 tggttaaaat caacttatat aaaactatgc actgtaaatt ctgacacttc tgtttgaatc
      481 tcttttcaaa cacttgtctt tgctcaccat aatagatgtc agttcttctg atgtagttca
      541 agcatgagct tcatatgaag actcagctat gtctattgca tttctgaagc tactactcac
      601 tgaagttttg tgctgtttga catcaaagat aggcaagaat cacctgctga gttcacatgc
      661 atggagcaaa acatcttcaa atcacttgtg ctagacaaaa gtttttcata ttaagctttc
      721 actatcatgt agacttaaag
//
LOCUS       KCOD01000663             282 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 73951pyr ultra-conserved element locus
            uce-4417, sequence.
ACCESSION   KCOD01000663
VERSION     KCOD01000663.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 282)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 282)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..282
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="73951pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>282
                     /note="ultra-conserved element locus uce-4417"
BASE COUNT           80 a           49 c           49 g          104 t
ORIGIN      
        1 gaatcagatt agtcccatgt gtgacctgcc ggtccatctg tatgagctgg acttaatggg
       61 cactcttctc agacttactt cagtttgaag tatgagagag ataaatttag tttaattttc
      121 aacagatcaa gctatccatt ttccaaatgg accatctgga tcagcctatt aaaattaatt
      181 tataactttg cagtgtgaaa attcgtttgt tagcttaaat aaagttgcca aaaacttttg
      241 ccacttgtca ttgttttttt ctggtatgtt ttcatactat ga
//
LOCUS       KCOD01000664             585 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 74066pyr ultra-conserved element locus
            uce-4312, sequence.
ACCESSION   KCOD01000664
VERSION     KCOD01000664.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 585)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 585)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..585
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="74066pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>585
                     /note="ultra-conserved element locus uce-4312"
BASE COUNT          183 a          135 c          107 g          160 t
ORIGIN      
        1 agcaccgtgt tgcctgccct ccacgactct tttccccaaa cataccatgt aaaaccagca
       61 caaaccttca acagaatatg caaaggaaca aagtaaaacg gggagaacag ggatgcacag
      121 aaaaaaatca agggctacct tccgagcttt gccaaaaagc gtacgctttc attcggaacg
      181 cagtgcgaaa acgctcctta ttattcaaga caacattctt aggctctttt gaaggacttt
      241 cttcaatggc atctacattc agaggggtaa atagctttcc tttagtattg gtaccacgaa
      301 cccgatccaa gagacccagc ttttggctac aaaataagca aaagtaatca ttttcctcct
      361 ttgtacacta ttaacttgtt ttcatgatgc tttgtatata atgggctttt tgtatacaag
      421 gacactgctg gggctaccat aacatctttg taaacaacag ttaagctcca cagataattt
      481 ttatgagcat atcaatgttg aaaatgttac cagagggtct gctatcctct ccatgcaagg
      541 cagtgcttca gcccacgtag cacaactgaa gcagtagttt tatta
//
LOCUS       KCOD01000665             415 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 74164pyr ultra-conserved element locus
            uce-2703, sequence.
ACCESSION   KCOD01000665
VERSION     KCOD01000665.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 415)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 415)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..415
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="74164pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>415
                     /note="ultra-conserved element locus uce-2703"
BASE COUNT          117 a           74 c           92 g          132 t
ORIGIN      
        1 tgatccgcaa agttttttga agtcctaatg aacctgattg caggaacatt tataatcccc
       61 catggcttta aatgaaatca gatataatca ggagctatgg ggaaagggag tgtttacagg
      121 cagagattgg gaagtgctgc tgtattagta aagatgctgc tccttctatt gatgtctgaa
      181 atgatggata atgtgagaat ggcaaatata ctatttgtct aatggctctg caattaaatt
      241 cccctgtaaa tgacccatgc ctcatttcat cctaatctat ggaattttga ttgaattcgt
      301 cagctctaat tgaaaaatac tgcactttaa tgtctgcagt gcagtttcag gaccgcgctg
      361 gttttaatga gacggtgccc ctctgacctg ggaatatttt agacttctag tcggg
//
LOCUS       KCOD01000666             601 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 74272pyr ultra-conserved element locus
            uce-4522, sequence.
ACCESSION   KCOD01000666
VERSION     KCOD01000666.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 601)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="74272pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>601
                     /note="ultra-conserved element locus uce-4522"
BASE COUNT          169 a          104 c          126 g          202 t
ORIGIN      
        1 gcttgtgtga cagcaaatac tctggcagtt gtttgattgc tgtctgggtc aggagatcag
       61 tgctttctac aagatgtagt gtgttagtgg acaggttaga aagcaaatta cagctgcctt
      121 tcttaggcat attactgccg aggctcattg ctttgggttt tttactgtac atcagcaata
      181 atatagcttc tgaagactgc atgtgacagg ttaggcattt tatcctttga gtaaacagta
      241 atcatggtgt gaagaaagtg gggcattgga gatttttccc attctttgag atttccattc
      301 ttcctttcta gtttgctcca agggctcttt ggggatacat atattaagcc ctttaaatag
      361 ttcataataa atctttgtct cgggttgatt ctgacagttt tttaaagagt cttttaagag
      421 acaatcctca atcatttgct aatccatggg gtgatcttca gacttggaga aaaagaaaca
      481 gttcaagctc caggattgtg aagatacaat gtacaaaaat tttaactcag aaaaactcag
      541 aaaatacgga aatttcacca gtcaatgttc tgcttgtgcc taaatgctca ttctccaagt
      601 t
//
LOCUS       KCOD01000667             731 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 74381pyr ultra-conserved element locus
            uce-2299, sequence.
ACCESSION   KCOD01000667
VERSION     KCOD01000667.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 731)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 731)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..731
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="74381pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>731
                     /note="ultra-conserved element locus uce-2299"
BASE COUNT          244 a          112 c          137 g          238 t
ORIGIN      
        1 agctgtgatt gagatcttag atttacgaat atgtaatact atatttgcag atattatggt
       61 taaaggacaa ggaaggatat atgttaataa tactttgttt ctgctgtaat agtagcagct
      121 tgctagagtg tcctgccatc aaacagtatt tatagcaatg tataaaacat attagtgaca
      181 tcccttttaa attcaaaagc tttttctaat attactgtct gcattcaaag cagagctcaa
      241 tgcctaaaag ctggtcaata aacattttag tactgctcta ttccagtgat ctgaattcaa
      301 taatgttacc tttccagaag ctgcaaaatg gaaagtgaaa gaatgattta tgaagcttag
      361 ctatgcatgg ccagataaga aagctttaac tgatgcttgc aggattctct ttaatgaagt
      421 acaagttgcc aagataagtt taggtaaatg aagcctctgt cacaatatgt tacagcaaaa
      481 gaaatgacag agacagcaga gcagatggag gttattacag aacagtggtg tcaagaattg
      541 tagtctaggt aactgcacaa agacaacaga tgcattggat ttgttattaa tgatttcatg
      601 atagcaatga gtatttatag aatctgatta aattaagcct agcaagcttc tttccttaaa
      661 ttgtcgttca gccttcagtg agatcatatt attcagtcat cagtctcttt tgagtagaat
      721 tcttctcttt c
//
LOCUS       KCOD01000668             835 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 74493pyr ultra-conserved element locus
            uce-1865, sequence.
ACCESSION   KCOD01000668
VERSION     KCOD01000668.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 835)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 835)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..835
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="74493pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>835
                     /note="ultra-conserved element locus uce-1865"
BASE COUNT          291 a          130 c          165 g          249 t
ORIGIN      
        1 tgcacattcc agtattttgg ggagaaggag gaaacagaga aaatgcaaaa tgaatctaaa
       61 acacatttga ttctttaaat ctatagtaaa tctaaatgat ttaccagaac ataaaattct
      121 cacatgcaga gtcaaggact gaatattcta ttcatgtgca agaatcattt attcatttat
      181 aattagataa aatgaactgc aattttttaa gaaaaaaatt tgcatgtggc aacagtaatg
      241 tattaaaggg tggcactttg ttactatcca tttgttagtc aggacagtgg agctgcaatt
      301 taatagacaa gaaataagta caatagagga agggaaaaaa ttaaattccg cgtgatcagc
      361 aaggtttcga acaatcgcta gccaactgaa gtgggtgcca tatctataag tcattttgtt
      421 ttataggcca ttaggatctc ctgagagagg ctgcatggag accgctgctt tttgttgaaa
      481 ttaaaatgtc agagaaaaag aaatagaaca aaacagggaa tctgcaatta attacaaggc
      541 cataaaaatt caataatcag gaggcagtgc tgctgtaggc acagcggtat ctgattcagg
      601 ctaacaggaa tggaatacat taatcttttc aaattagttt tttaatctga cggggatata
      661 tagtgacgtg ttcttttact gtttgagcag agctgctgtc tagtatataa tgctgagtgt
      721 ctggaattag gacatctata gccgttttgt gactacaaca ttttcaccgc atttattcaa
      781 ccctatctgt acacctgtcc tacagtaatc aggcaaaaca tgttcaaagt tcata
//
LOCUS       KCOD01000669             598 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 74605pyr ultra-conserved element locus
            uce-5732, sequence.
ACCESSION   KCOD01000669
VERSION     KCOD01000669.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 598)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 598)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..598
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="74605pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>598
                     /note="ultra-conserved element locus uce-5732"
BASE COUNT          193 a          110 c          122 g          173 t
ORIGIN      
        1 tgtggcttca aatttacaac taggacatat aatctccttg taagaaaaga gtcaagttca
       61 agaacttagc ctctacagta aagctctcat tttaactaaa gaagctgagg tcgacggcct
      121 ctcaaatgaa acagataagg cgacataggg ttcttgtcag aaacaaatgt tatgtctctc
      181 cctactgaaa agcttaaaga tattatcagc aaaagcctag ttgggcctga aatgggtccc
      241 agagaagtaa tattaaccag gctcctggca gatcatttat ttatctcaag ctaaattcaa
      301 taaagagagc catatataag tgagggaaaa taatgcagct gctagtaatt tatcattgga
      361 tggaaagtca ttgttatcct tatctctcca atgatgttct atttccaact ggtaatgaat
      421 tatggggctt gccacatctt tactatgtga caggtcaaca ctacctcacg ggtactgtac
      481 tgtatttatg caatcgatag agagtttgaa aatattggca accattttgt gagagtgacc
      541 tagggcggtg gcggtcagtg gatagagcag catttctcta ctcctttaaa acaaagat
//
LOCUS       KCOD01000670             573 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 74712pyr ultra-conserved element locus
            uce-7214, sequence.
ACCESSION   KCOD01000670
VERSION     KCOD01000670.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 573)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 573)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..573
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="74712pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>573
                     /note="ultra-conserved element locus uce-7214"
BASE COUNT          189 a          103 c           90 g          191 t
ORIGIN      
        1 taatcaagga cttgtttcta aactcttgat ggaaattgac tttaaatgaa tgcaacctca
       61 atgtttataa atgtttgtaa ttcagcttag aattcttctt ttttaaacaa taaaaaaata
      121 gtccttggta ttgagaatgt taacatcatt tgccattagt tagaagtgta acttcattaa
      181 agcagaaggc catataatcc ctataggagc tctctgcagg aaatacttta ttcttactta
      241 gcatatctgt aaattctatc agcattagtg tctttcacaa tgtttgtttc tcctgaatat
      301 ttatgaagga ctgtccagtg acctgcttag aatctccagg tttgttctgc cttaacaatc
      361 tctcaagtag aatgcaatca gaagactcat tctccctcaa cagcagcgat caatatggca
      421 caggccaagg aaatgtctgc agaaaagaga tttctatcaa tgaaatggaa gaaagaaaac
      481 aaaatacagg attggactta atacctaagc catgatagtt tcttctttgt tcatctttgt
      541 gtaatccatc attacattat aatgttcacc aca
//
LOCUS       KCOD01000671             760 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 74823pyr ultra-conserved element locus
            uce-1793, sequence.
ACCESSION   KCOD01000671
VERSION     KCOD01000671.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 760)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 760)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..760
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="74823pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>760
                     /note="ultra-conserved element locus uce-1793"
BASE COUNT          273 a          130 c          131 g          226 t
ORIGIN      
        1 aaactctgtt aatgcagcct ttgaataagt gctaccctgc tctttaaatg ctaaagttca
       61 ctaaaactcc agtgatttat gtgcagcttt tgactgccag cacctggcag atgaagaaac
      121 ctactcaagc ttcagtcata aacagatagc atacaattta attttaatgt gctcgttagt
      181 cgtagcacat ttcagacata attgtgaacg caacacaaaa ttatagcaaa aagacaattt
      241 taatgctgct gtagaaaaaa aggttatatg aagagtcata taatggtgct tcattgtcaa
      301 caacaaaaca gggcacagag tgcattacag tgtctgtgct gtttacatgc caatatttta
      361 tacatagatt ctcatatggt gtcagctgtc agttacttct gcaaattaac tgccaaaaat
      421 ggagacgaac agaatcactt agtgtgctgg taaccacggg ttacctttca tatgcctaaa
      481 gataaagctg cagtatggaa tcttgggaga ataattaggc agaacaaaac agaaagttac
      541 caattgaaat aaaaaggcat tctacaatag gaaataacaa ccaagagcgc ttataaataa
      601 gtaaaagagg ttatatcaca gaatgcctca taacttttta agcaaagtat tacagtacaa
      661 acattttaaa ggctttatca atgtttagga aatacagtac aagtttttca aatagattta
      721 accctttgag cactgagttt attttgaatt ttctcttttt
//
LOCUS       KCOD01000672             818 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 74934pyr ultra-conserved element locus
            uce-2125, sequence.
ACCESSION   KCOD01000672
VERSION     KCOD01000672.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 818)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 818)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..818
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="74934pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>818
                     /note="ultra-conserved element locus uce-2125"
BASE COUNT          236 a          138 c          183 g          261 t
ORIGIN      
        1 ggtgctgggc tgggaagcac cttgtgtgat acagcttctg tgtggggtga atgtacctaa
       61 gggggagagc accactgcat cccgtggaag gttaacatga agtgagcttt taattaagtg
      121 gggaaaaagg gggcattcta cttcaatcag attaaattgg ccctctcttc agtgtgcaaa
      181 cgataccaaa gtagcactag gtcaaaagat ctgagatcac tcatttgcag tacagcagca
      241 atatggttta caggtaatac tattatcaac ctactttttt aactatcgct tagactaact
      301 tgtttaaatg agaaaggaag ccctgggcac aaagggatct tcatgttcat ttggtgtatt
      361 aggagaggca cccagttaaa gagtgttcat tactattgta aattcctgcc ccagggcttg
      421 tatccttgca ctagattaca tgaggtctat gttcatggac agcgtttggc gtctgattga
      481 aggtccagcg cagctaatta atttcattag gaagtgaagt catcttctag caggaattaa
      541 tatttggagc ttcgtgttgc taattcattt ccagatttaa ttagctcaga gaagaaatgt
      601 tgcttgggca agaggacttt ttaattatca gcttggataa atttgaaaat gttgatgcct
      661 aggggttgag ttaattaaaa cctgcattat tttaacttta attagctccc atctttgttt
      721 tgcttcacca tatggccatg tcctgtagtc aaatttagtt aattaagcta attaagctaa
      781 tcattttaat tactcaagac aatatgattg gatagagg
//
LOCUS       KCOD01000673             695 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 75045pyr ultra-conserved element locus
            uce-1809, sequence.
ACCESSION   KCOD01000673
VERSION     KCOD01000673.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 695)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 695)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..695
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="75045pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>695
                     /note="ultra-conserved element locus uce-1809"
BASE COUNT          209 a          122 c          149 g          215 t
ORIGIN      
        1 tatctgggat actgaaaagc tatactcaga aagtattata atgaatgatg gagttctttt
       61 tgcttctggc aactataggc cttttctgaa tacagcaaat gactgtttca aaatgaaaac
      121 cactatgtgt ttgaatgtag tattatgcct agttgctttt tgagtgaaag gcggctttaa
      181 aaagttaggt atatcattgc caaaaagggc tacatagtat tgtcagcatt ttgagaagga
      241 atagatcctt tttttcctga aactccattc tggacagctg ttagtgactt accaaacttt
      301 tcatatggat atgtatgtta atgacaggca atgaactgga gatgaagaga cccaaacaca
      361 gaccgatctc ttcagtgcac atcaaaagcc tttacaaaag gagcagtaaa agaggcagtg
      421 atggtggagc cttcactttt gtacactgaa ttagttctgc aagcaatgaa actgatcttt
      481 tctccttgcc agaaaagtct ggtgattttt gtgagtgctc attagcacaa gaggcatttg
      541 tgaagataat tgactgacgc tgatactgct ggctgtcaca acagtgccag cagtgtatgt
      601 gcgttttaat agttgtaccc ctttcttaga tataatgctt tctgaaagat actggctctc
      661 taaagctcta cgagcccatg caaagcaggg agttt
//
LOCUS       KCOD01000674             759 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 75158pyr ultra-conserved element locus
            uce-2487, sequence.
ACCESSION   KCOD01000674
VERSION     KCOD01000674.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 759)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 759)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..759
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="75158pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>759
                     /note="ultra-conserved element locus uce-2487"
BASE COUNT          233 a          134 c          156 g          236 t
ORIGIN      
        1 atctggcata atataattta ctctattttt gctattaata caaatgcttc ctgctgttct
       61 gaaaatccac tgtttcttaa tccagcatta ctgtcccctt aatgcaacat ttcaaaccca
      121 tttcgcttca ttttctgtta gaaaagaaaa gggaagatta aaaaggaacc aggtatcatt
      181 ggttcatatg catatgggtt cagcatgtga gggtgctgtt tctaggaccg gccttaagat
      241 gtgactgata gatcttattt gtctgataga gttgaccagg gaaatagagc tacagctggt
      301 tacttcatta ggtcctctca ttgattgaac cctgctgaag tgatgcagca ggctcctgag
      361 ataactgctg gtaatagaac aaaatgaatt cttatcacag agattggaaa ggccattaac
      421 cctggcctcc aatgcttttc agaggtcaca gacaggaagc caagcggtga ctgggaaaac
      481 tgttttctgt ctaactacag gtcatgttag agggggtctg tgactttttt acccttcagc
      541 ttctgtacag atgaaactgt tacgctggca gatgttaata atcagctgta aataaatatt
      601 ggaagcagaa gaagaaaaac gagaaagcac aggaattttt ttcaataaat atttaataaa
      661 agagcaattg tttctgtgat atttactgcc agttctgctg tagatttttg cctaatactt
      721 ttccatataa attgaaaaga gaaatacgta ggggcactt
//
LOCUS       KCOD01000675             597 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 75267pyr ultra-conserved element locus
            uce-7163, sequence.
ACCESSION   KCOD01000675
VERSION     KCOD01000675.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 597)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 597)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..597
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="75267pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>597
                     /note="ultra-conserved element locus uce-7163"
BASE COUNT          161 a          168 c          155 g          113 t
ORIGIN      
        1 caagtcacca gggagcacag actgagagcc accccaggaa caaccaccct acagacctag
       61 ggaagtggag acaggactgc tgcaaaggga cagacaccag aaccaaaggg ataagctaca
      121 gacaggtcct ctattgccca aggcaaggag gaggagacac cacacagtgg ccagctgcaa
      181 aaggccagtg ggaggcagga cttactcatc tttttacaca cagccataca atactcctct
      241 gactcaaaat tgttcctgtt gcctccgcag cctccatata taaagcgaat gcattttctc
      301 ttgttaggat cgaagtacca acgaggcatc acagcccggc agggccctgt catggcctcc
      361 tgggagcaga cagctgtgtg gagatgggtg agaacatcag ctgaggagca caggccttgc
      421 cgagtgattt acaggtggct ctacttcact ctgaggcaca gcctcagcat cgctgctgca
      481 ctgacccaag ggcttctgtc agacactcca aagcaagctg gtcagggcat ggtgctttgg
      541 agctagccaa gcagctcact cctctacacg gagctctcat ctgtgagaga tttctcc
//
LOCUS       KCOD01000676             653 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 75377pyr ultra-conserved element locus
            uce-7472, sequence.
ACCESSION   KCOD01000676
VERSION     KCOD01000676.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 653)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 653)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="75377pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>653
                     /note="ultra-conserved element locus uce-7472"
BASE COUNT          181 a          132 c          125 g          215 t
ORIGIN      
        1 cccaccgctg gctttacatc gcagctaaat ttgaattgat gacgggtacc gtgtttgtaa
       61 tcccacatca agcggcgctt gtgtctggca tttatttgtg ctattgcttt ggcagcttct
      121 tccagagcct cctctcatct gacatgtcag gtctacaatc aaagaggaat agtgaattca
      181 cttttacagt taggcaagct gaatactatt acccatgtat ttgtcaccaa cctgcagatc
      241 ccagcctcta atctgccatc tggatggatg ctacaaagtt aagagccagg gacatgcatt
      301 tctcagtaac tacctgctgt cagctattat tttaaggatc ctgtgatttt cttttatttt
      361 gactagaaaa aacaaggcag ctgcagtaat aaaaaggcat atcaactagt cacttcctgg
      421 cagatttgtc actggtgtgg atacagtagt ggtatttttt gttagcaaat gtatacagtg
      481 gaatatagta ttgtaaatct gtagtgcgtt cttcacaaag ggcccttttt agaaccttgt
      541 atacagtcaa cagaataaac gtatttgctc tcaccttatt gtgcacatgt attatatttt
      601 acaatattgt ccattgtgtg caacagactt tgtaaatatc atcggtttaa aaa
//
LOCUS       KCOD01000677             948 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 75487pyr ultra-conserved element locus
            uce-396, sequence.
ACCESSION   KCOD01000677
VERSION     KCOD01000677.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 948)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 948)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..948
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="75487pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>948
                     /note="ultra-conserved element locus uce-396"
BASE COUNT          293 a          173 c          179 g          303 t
ORIGIN      
        1 tggagttttt tgcccttttg gctaatcata ttgtcagcag gtatgaaatt aagaactcag
       61 gagtgattta ctgtgatgac agactctcac actaagggtt tgttacattt ggtaaactct
      121 taatctccca aagcgcagca actgattcca gtaaaagata cagataaatc agttttgtga
      181 aacaaattta agagagaatg ttgtttacaa aaccaggatg ctatttttaa agctgccagt
      241 tcaaacatta tgtgtgatat tctgtgctat tgaaagggtt aagcttttct gactttcaga
      301 tacaatgaaa ttatgacagg aagaaaattg tgccatttta gcatgaaaat gcttgtacaa
      361 atactgtcgt tccttccttc ttactttctt tataatgcct caacgatagc taagatgaca
      421 gacatttgac aggtatctgt aagcatacaa cccaggcagc tcattaaagt ttttctttct
      481 atgcatcagc tttcacaaag gcaaaaaccc attagcattg actattttgc agattagaag
      541 aattaagggc ttcaaacgtt ggcttatacc aagcaatgtc atttgtgaag tgatgtttgc
      601 tttattattt ccctttctct ccctctgaaa ccagactgac atgactttag ctcaacgtag
      661 ggcgtaatgt gcaaaccaaa ggactggctc accgatgaaa agaaacacat tcccttttat
      721 acatgactgg aatggcaaaa aggggagact ttacatgtac tatttaggct cattagagta
      781 ctgattatga tagttctccg gtgtaatctt taatcgactt tgacactaga tttgccccgt
      841 tacaaatcct gtcatgcaaa ttaagtcatt tgtgttgttt gatatggaaa gatctgctat
      901 gaaatgaaag attagttcac agatgaggca ccagagactg ctgccctt
//
LOCUS       KCOD01000678             810 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 75599pyr ultra-conserved element locus
            uce-7209, sequence.
ACCESSION   KCOD01000678
VERSION     KCOD01000678.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 810)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 810)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..810
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="75599pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>810
                     /note="ultra-conserved element locus uce-7209"
BASE COUNT          210 a          160 c          247 g          193 t
ORIGIN      
        1 tttctcctgt gtgactgcgc cggtgcacga taaggttact ctggaacttg aatgttttcc
       61 cacaaaattc acaggacttg ctcttggcct gaggctgggg aggcgtagtg ctgctggggg
      121 gcatgggggg cagtggcggg gtgctcaaaa aaggtgattt aggactcggc tgaaaaggat
      181 tcaacagacg atgcataggg ttggtgcgac tgggtgagac tggcggaggg gtggaactgt
      241 ttcctgccag ctctcgaagc cttctggaga aatccatcgc tggggactca attgccatgg
      301 ggtttaaacg cataactctg tcaaaggcac tgggatgctg ggcaactaac cccatttctt
      361 cggcactaag gcgatgtgga tccagatgat gacgaggcgg tgggctgaac agcggaggcg
      421 tgtttgggag ccgaccctca ccaaagccag ggtgttcacg caagatgggt cctgtcatgc
      481 gcaaaaggtt gaaagggttg ttgtctccaa gaaaattcat cagcggggac tgtgcaacag
      541 tctccggtcc cagaggagga gggatggtga tgcgtggagt aagggaactg tttgaagggc
      601 ttgtttccag gtagatgcgg aatccatgtg tgttctgggc atgctgaagc aagaaccaag
      661 cgctattaaa aggctgcttg catgttgtgc aaatatagct tgaaggctca tctttaccta
      721 taaaagaaaa aacagaaaga acacttaaaa aataatacag cggagaacat ttaaatagag
      781 ttggcattca ctttattttg ctaacacatt
//
LOCUS       KCOD01000679             363 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 75707pyr ultra-conserved element locus
            uce-4299, sequence.
ACCESSION   KCOD01000679
VERSION     KCOD01000679.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 363)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 363)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..363
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="75707pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>363
                     /note="ultra-conserved element locus uce-4299"
BASE COUNT          116 a           86 c           63 g           98 t
ORIGIN      
        1 aatcccaaac acagacccat aaaaaattca ctctgttaca cgtggcagac taaattcgaa
       61 cgcctccttc ccacttgcgg ggttgtagtt ttttttcttt tccagagcat cttgagcaga
      121 taatcagagc atgctgacat tcagcagtaa tcaattagcg cctactttag attaaattga
      181 gaatatgtaa attggactcc tcatcaggca ccacagtcaa cgttgcagag acaccatgct
      241 ctgaacatat caaacagatg aaatgcagaa gttgttccaa atccttctcc aaaacaggag
      301 gccaggtgag ctatagcaac catttaagat gacaacttac tagcttctgt taaattagcc
      361 tct
//
LOCUS       KCOD01000680             569 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 75814pyr ultra-conserved element locus
            uce-6731, sequence.
ACCESSION   KCOD01000680
VERSION     KCOD01000680.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 569)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 569)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..569
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="75814pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>569
                     /note="ultra-conserved element locus uce-6731"
BASE COUNT          167 a          104 c           97 g          201 t
ORIGIN      
        1 ttttctgttt gtataatgtt gtgattaaat atggtggagc cctagggagt gaatttttta
       61 tttgaaggtt aagccaatat taggaaaaaa taaaataaaa ttaatcaaat ggcccagagc
      121 atcacagcca cagttgattc caagaatgtt tggttacaaa atgagcaact gactaattgt
      181 gtaaatgctg ttaattagct gtgcagagcc cctaactggg ctattccctg taactaataa
      241 gaaatcaatt agctaatgaa gtggccatta aatgctatgc taatcttagc tgggatattt
      301 ttaatgtttc ttcttcttct tctttttttt cttctttatg atccttccta attgccattg
      361 ccatacggag ctcacagctt tcagcatgtc taatgaaaca tcattatatc ataactggca
      421 ttcttggaag agttagtagc aaacctgctt cccaattatt tttaattgcc agacatactc
      481 ataactgggc cttctaccaa gtagttcaga tccctgcact gtcatgtaat atacccaaag
      541 attgtgtttt cttttctttg catatgcag
//
LOCUS       KCOD01000681             400 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 75916pyr ultra-conserved element locus
            uce-674, sequence.
ACCESSION   KCOD01000681
VERSION     KCOD01000681.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 400)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 400)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..400
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="75916pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>400
                     /note="ultra-conserved element locus uce-674"
BASE COUNT          137 a           80 c           71 g          112 t
ORIGIN      
        1 gaaaaggtat aactttgtaa gaaagcacta tcataaattc aaaaaaagta tatcttaatg
       61 atacacttag agtaaatcat ttgccttgag agacaggagg tctctggtga cctgtatggc
      121 agccacaaga gactaccagg ctagctactt tcagctaaat gtactctcat attaatattt
      181 taaaatgcca taatgcctct ctgaaaacct cagaggacag atacatcaat ttgcgaggtc
      241 ttcactccag gaaatagaaa cagggataat ctgccattaa aagaaatagt tcattatgtg
      301 tgcttcttgg gagcacataa actatgtccc tcacatactt atgttgcaaa tcctcacttt
      361 aatgtgaagg gaaacaccat gccccagagc tttattgtcc
//
LOCUS       KCOD01000682             912 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 76021pyr ultra-conserved element locus
            uce-325, sequence.
ACCESSION   KCOD01000682
VERSION     KCOD01000682.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 912)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 912)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..912
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="76021pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>912
                     /note="ultra-conserved element locus uce-325"
BASE COUNT          274 a          195 c          158 g          285 t
ORIGIN      
        1 agcaataaaa agcaacactt gaaattcatt ttgcccactt gtttttgtct gagtcagaat
       61 ctaaatcaag agagatcaga ctgtagtttg tgagcaaatt tccttaacaa acaaaaataa
      121 agatacccat cctcctcata ctttatgcac agtaatgcaa gttattttcc actccattta
      181 gacttttcac cttcctttca tttaccctgt tttttacagt tcaataaata tttttccaag
      241 ctccacttgc caaacaaaag agtttagctt cagtgttact cctctgacaa atatccttat
      301 ggtgttgcac atgtgagcca ttgataaaca aattaaaatt ctgtcccagc tcagagctca
      361 gctggcccat ttcatcttgc ggtatgggtt tgtaaaggtc tgggtgtctg tcatcctccc
      421 ctaaccttgt ctttgtcaaa gggatacaaa agcctgcacg ctcggggcct tacgatactg
      481 attagtgtga gtgacaaagt ggagtagcaa gtccactcag cccttcataa taaatctatc
      541 aaagagtaat agaattccat caattctgca tcatccccga gggtcgctgt gctgggatgg
      601 aaagtgtgtt ccgctgggat tgtacaactg ttattattca attacactct tttcttccta
      661 gttaaagacc atgatatcat tatcacttaa tgaatacata taattggatc tggactctat
      721 gtttggctga tgaataccac tcactattca ttcagtctca gctcatcttc tgaccattta
      781 ttatagactt ttggctgaaa accatgatga caaagggaat ttgaaattag ctgagaattc
      841 attcaatgct cagttagaca caaaggcaaa atacaattct gacgcgtaaa tgaggctgag
      901 accacacaga ga
//
LOCUS       KCOD01000683             459 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 76133pyr ultra-conserved element locus
            uce-6863, sequence.
ACCESSION   KCOD01000683
VERSION     KCOD01000683.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 459)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 459)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..459
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="76133pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>459
                     /note="ultra-conserved element locus uce-6863"
BASE COUNT          162 a           91 c           96 g          110 t
ORIGIN      
        1 atgtaatatt tacaataacc actaaatcag cagatggttc cagaatagac tgaaccaatt
       61 aaatccaaat tctaaagact gcagccaaga ataaaaacaa ccaagttgga gcaacatatt
      121 taaagacacg gaaagaaaac ctggcaagag tccctgtaca tgtctgtgtg cagttaacct
      181 ctgttgttaa cactgaagga aatgccaccc agtaaatgga ggagagctat aaaaataaaa
      241 caacatctgt ataaattttg ctaacacttg cctcctatga cctatgtatt cagaaaatgt
      301 ccagcgtcaa aaaagcagat gagtgccctg tgttatttgg gtcactgtgg gcaaatggtg
      361 gggtaaacag cagtggtaca cttccagggt tctgttagcc aaatcctgca cagctagacc
      421 tctgacagag gactccatgg gtgaaaaata ttactgggg
//
LOCUS       KCOD01000684             733 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 76236pyr ultra-conserved element locus
            uce-1239, sequence.
ACCESSION   KCOD01000684
VERSION     KCOD01000684.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 733)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 733)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..733
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="76236pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>733
                     /note="ultra-conserved element locus uce-1239"
BASE COUNT          204 a          193 c          138 g          198 t
ORIGIN      
        1 ctcaccatcc ttcctgcccc tccctggatt ccagctcttt gggcaggcca gcctcagagg
       61 ttgggaaaaa gggagacact gccctcaaat accactaaca acaccttttc cttcaaagct
      121 ttccaccccc tcttgggctt gggaaggggt cgtggggatg gaggctggga gggtaggaca
      181 gcacctcttt cccattcacc aaggtttgat tccctttatg agcatgatcc gccaatccgt
      241 aatcaagggt taatttcaca gctcactgct tcatctagca taatatccat tcagactaat
      301 taaatctgtc taataatgtg agtgtctttg tctttgttct ttccattctt tgttttacac
      361 ccttcacatc tcatctccag aactacacgc catcacactc tgcttgacaa gcagaatcca
      421 tccctaaaat taaaacattc ctgacctatc tgcgatgaca aggcaagcaa gcttcacagc
      481 gctgcggccc atgaagggag ctgacacatt tgtttttaat ttcaaaagag tagaaagtga
      541 agatctgacc ctgtcaatca ggccctgtga caagtttaat cattgctgcc ccacaaaaat
      601 cacggctaaa taggaatgca aataatgtat cacagggctc ttataaatgc taatcaagga
      661 gaagtaatca actgacaatt tcactgatct cctttctgaa gaagtcagtc aacgcactgt
      721 ctctggacca caa
//
LOCUS       KCOD01000685             598 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 76347pyr ultra-conserved element locus
            uce-7320, sequence.
ACCESSION   KCOD01000685
VERSION     KCOD01000685.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 598)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 598)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..598
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="76347pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>598
                     /note="ultra-conserved element locus uce-7320"
BASE COUNT          195 a          121 c          106 g          176 t
ORIGIN      
        1 aaaacagatt gtgacacagg gcagtgattt tttttaacaa tcctattatg aaagacagag
       61 tgctcccatt tcctttgcag cttttatcaa gacttaaatt gctgccaagg gagaagggaa
      121 cctcactgct tttattttat ttttaattag ttactaaatt cctgcctaag tctcctccga
      181 gcagagatcc aacagtatcc ctattaaatt atatagagcg agtccagtcc ttggctgtca
      241 gcgggaccca tcagtcctaa tttatcgccc caggaaacac agtacaatta tggtaataaa
      301 taataatagg attcagtaca tgacaacatg aatgatggag cctctcagaa ctcatttaca
      361 ttgctttgtg ttgcaatcac cctgcttcta atgtaatgcc aagcaaatga gcctttttga
      421 atattgtgca atctattgca agtcaactgg cacaaaactc actcaataaa tcatgttcaa
      481 acacatgcct ctaatgacag gtaaatcaac aatgaagtaa ttgcatttaa tgtattgaaa
      541 tactggacaa aaacagtgac ctcaaagtga ctttttggag aagcgttgca gtggcaga
//
LOCUS       KCOD01000686             669 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 76457pyr ultra-conserved element locus
            uce-7074, sequence.
ACCESSION   KCOD01000686
VERSION     KCOD01000686.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 669)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 669)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..669
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="76457pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>669
                     /note="ultra-conserved element locus uce-7074"
BASE COUNT          229 a          111 c          115 g          214 t
ORIGIN      
        1 taattcaaaa ggcaaattag aaatcgatag aaatatatgt ctaaacctgg acaaagacaa
       61 ctgtaaagga gactgagtac tacaggaata ataaaaatac cactgcataa aaagtcagct
      121 gcatggcttc atctaaaagt gttccggaaa aaatttgcta tcaattacac ctctcctctg
      181 tatacaagct tcataaatga agtatagggt tttaagagac attttctctt tcttttgtca
      241 ggtctggagt cattaaacag agattagctg gataaataga ggaagtgatt tttaaactgt
      301 ttgcaaactt aatgtgaaga gcccagcctt gcaaattatc acgtctaatc agagatgcac
      361 gcttcactgc tccagtaatt gtactagtat tagtcaaatt cttgttgtct cctcattagc
      421 catgaaaagg agactcaaga tgtacttcat tagagtatcc tgaatataaa tttttagtgt
      481 aaggaggaag agatgtgtta catactgtac tgtatataga aagctactaa gaacataatt
      541 gaatcatgct ggtgttagac tgaatcttta acaaccaaac cttttctctt ttcattttta
      601 ctgtcttgat ccttctttta ttttcagtga gaatatggca cttgaaaatg taatttacaa
      661 ccaatgtca
//
LOCUS       KCOD01000687             612 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 76566pyr ultra-conserved element locus
            uce-7685, sequence.
ACCESSION   KCOD01000687
VERSION     KCOD01000687.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 612)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 612)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="76566pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>612
                     /note="ultra-conserved element locus uce-7685"
BASE COUNT          216 a          105 c          115 g          176 t
ORIGIN      
        1 gcttacatta catatgataa acacagtatc atggaagaaa tgtattaaaa tggatttcaa
       61 aagacagatg aaacgtaaac ctgatatcct ttttttcacc attaaatagt gttatagaaa
      121 gttaaataat gcacaaaaca tacagtgatc agccaaatgc tgtctaaccc tatcaaacac
      181 aggtcaatgc catcatagca gccgtctgaa atttcctcca ctggagctgc cgaatgcttt
      241 ggaagtacag aaagcctaga attgagacag aattacacta gcattgtgta aataatcaaa
      301 ctgtgacctg tggggttaaa acctataatt ggagtgatac ttcaaagaga tgactacttt
      361 ttcagtgcta ttttgttcag ccagatagga agatggcttg ttgggatttt attggccagc
      421 aacgctattg caaaactgat attttcaaca gctgctggtg catttgtgct ctgaaaaatt
      481 agaggctaaa ttgaagcatt gaagaacatc aaaggaccaa tttaatgcaa aaaacgagta
      541 ctccaactgg atctatttta ctgcaaatta ataatgcaga tttatacaaa atgtgatgca
      601 ctgagtgctt tg
//
LOCUS       KCOD01000688             596 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 76675pyr ultra-conserved element locus
            uce-1529, sequence.
ACCESSION   KCOD01000688
VERSION     KCOD01000688.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 596)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 596)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..596
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="76675pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>596
                     /note="ultra-conserved element locus uce-1529"
BASE COUNT          207 a           83 c          123 g          183 t
ORIGIN      
        1 tatgcaagat ataaaatcaa aatattttta aagtaacttc aactggtttg ggaatgaaag
       61 aggtggctta aaaatgcatg ttctgtttca tttggggtgc agtaaaaacc atcaggtaaa
      121 agttgtaagc ccagaaataa ataaaataaa agcatcagtc atttctatca ctggggaact
      181 tttttcatct aagcacatat gaacaattga tccttgtagt catatatagc agtaaacatt
      241 aataacttaa cagtctgaag tcagtgctga agatatggag cattattgaa agatggagtc
      301 gagcaggtgg cactttaata tgttcagtgt catggttgac tctaaagact agtagaatga
      361 aattacttga ggttctaaag atttaaaaag cgaactcatt ttgctgcact aaggaaatgc
      421 tactgatcag gctttctgtg tccctttttt ctaggctaga aaatattaac cctgaagaaa
      481 atgacatggt aagccattct ctgaggagat ttcttgatgt cagtcttata tcttagaggc
      541 ttaagttcaa ttgagtgggt ttcaagaact aagatgtggg aaaaagaaga attgac
//
LOCUS       KCOD01000689             808 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 76785pyr ultra-conserved element locus
            uce-4301, sequence.
ACCESSION   KCOD01000689
VERSION     KCOD01000689.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 808)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 808)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..808
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="76785pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>808
                     /note="ultra-conserved element locus uce-4301"
BASE COUNT          235 a          137 c          162 g          274 t
ORIGIN      
        1 atctcattct agtcaaatgc tttaaactgt ccttaaataa accaattaat agtacctatc
       61 aatttcttat ttataagtat gtattgtaat atagatgtaa ttttattgga atttgaaaag
      121 cttggatgtt tttcacagtc tttgggtcaa acaatgaaat taaattgtat cgtgatctta
      181 atctattatt aaaaggtcct ggaaaggaag attacaaggt agattcaggt tttgaatcag
      241 ttttgccatt ggtttagcag cgggtgggca ggcagatgcc tgctcagagt agaacctatt
      301 gccatttttc accattgata gagtagcctt tcagagtcaa tgagctctgt caatgtgagc
      361 ttgtcaaggc tacaacttca tagacctgag aggcggtttg agaggtcagc ccttttcagg
      421 tttgctgtga tgcaaatgaa ctttaatgct taaacaacta ttggaatttt tatgtctgct
      481 ccttgttctt ttttcttcac aaagtcattg acgagacatt cagtgctttt taaattggaa
      541 gttgcattgt gctaaagacc tagtacagat ttacggaggg ctgaaagcag ttagatcatg
      601 ttcttttcat ggtgcgatta gaatcaaatc gatttcccta cagccttcag cattcagatg
      661 gcaattttaa caaagcttgg gggctagaca agggacaaaa cgactgaact gaatgttaat
      721 tacactctgc agccttattt tcttttgatt tggagctgac tggcaactaa attaacaaaa
      781 gtgtgaccat aactgctgcc ctattttc
//
LOCUS       KCOD01000690             554 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 76895pyr ultra-conserved element locus
            uce-2587, sequence.
ACCESSION   KCOD01000690
VERSION     KCOD01000690.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 554)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 554)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..554
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="76895pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>554
                     /note="ultra-conserved element locus uce-2587"
BASE COUNT          193 a          108 c          115 g          138 t
ORIGIN      
        1 tattttcttt gaacttcaat tacgaaggga gacgcccctc tctttttgca ttcattcagc
       61 atttgattga agagttaatt cagctccact gaacaatgat agatgtaatg aacagaaagg
      121 tcttccaatg tgagagatat tcttctcaat tctttctgac aggcaaggga tggtaaatag
      181 acaaaacaga gtcaagctag gcagcaactt gtaaaaagaa tgactctggt aatgtacaag
      241 gacagcatgc acatcaatga atacttacat aaatgtctgc accataaaat ccatcctggt
      301 atacaacact gcaaggatgc acacacaaag aaaaacatcc atattagtgc atttccacat
      361 gcaaatgcca ccaacccctg cacagctgag gttagtctct cacaagaaca gaggggaggg
      421 ggaaggaagg cactcttcac attggttaag gaggttggta ataattatca gaagtgaacc
      481 tgtaaataca tcgtcttatc aagtatgcca aatgcttagt caaaggaagg caaagcatgg
      541 caaaagtttg gagg
//
LOCUS       KCOD01000691             662 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 77004pyr ultra-conserved element locus
            uce-6625, sequence.
ACCESSION   KCOD01000691
VERSION     KCOD01000691.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 662)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 662)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..662
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="77004pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>662
                     /note="ultra-conserved element locus uce-6625"
BASE COUNT          180 a          118 c          133 g          231 t
ORIGIN      
        1 ttggagccct gaggctgttg actcagctca tgatatattg tactgttagt gtttcagctc
       61 tctcacaggg gattgctggt cctactttga ggtcaggagt taactacttg tattttagca
      121 atgtactgat atcaatacgg ctcctatgga aaccttattt gacgtcattt tcggatcttt
      181 gctactgtag ctaagcttta gtaaaagtca ataagaacat tagattgttg tctgtattat
      241 tacttgccac ttcctgccag caatctacca attcattagc agagagtttt ggaaatctca
      301 cttgattatt tatgcagtca atagcaaggc ttgtctgcat tcataattgt ttgattttat
      361 ggcctcttct ttaaacaaac attgtctatg gtaatgtgat gccctgatgg atgggaaagg
      421 ttttgtctgt gaatatcatt tagataatta aaaatgacag atgaaatcgc ctgctgtctt
      481 gacctgtact ttgttccctc agtgatgctg aagagatgct gattgctgtc aatcaaaacc
      541 cattggaggt ttgtaaattc tggctgctgt gaactctgac ctcgagtgtt gatctgaaat
      601 agataataac cttgaaattc tattagaatt taaaaactgt tcaccaaagg ggcacactat
      661 at
//
LOCUS       KCOD01000692             351 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 77111pyr ultra-conserved element locus
            uce-6107, sequence.
ACCESSION   KCOD01000692
VERSION     KCOD01000692.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 351)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 351)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..351
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="77111pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>351
                     /note="ultra-conserved element locus uce-6107"
BASE COUNT           98 a           73 c           59 g          121 t
ORIGIN      
        1 agcagaaatt agaatttata ttacatggtg ctcttagcat ttataaatgc tcactcctgc
       61 aagttaaaaa tcctgggccg taattcccac tctgccaggc acttttcaat catttctctc
      121 tgctaatttt ggtgtcaccc tcatttcttc attttgagca aatttgtaaa tggccctgat
      181 gtgttctaca atttagtcaa ttactgtttc agcctgcaaa cctcctggga aacggaacat
      241 acatggcctc aaggtacgaa tttcaataat tgtttcagga aagttagatg gatttgtaat
      301 gctgtgttcc acttattgaa atgtcaaata aaactgcact ttcttgagct c
//
LOCUS       KCOD01000693             455 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 77219pyr ultra-conserved element locus
            uce-2409, sequence.
ACCESSION   KCOD01000693
VERSION     KCOD01000693.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 455)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 455)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..455
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="77219pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>455
                     /note="ultra-conserved element locus uce-2409"
BASE COUNT          121 a          111 c           87 g          136 t
ORIGIN      
        1 ggtacacgga tggcacctct cactgctcgg ggctctgctt tcattaagaa cattttctgc
       61 ctgtgctcca agggcaccct ctgtcagaga ctgccacgca attatggctt tgaagtccag
      121 tgaatagaaa caaaatgaat tagcgttcag gtgttcgtgc aacctgatta caaaggccca
      181 attcagtggc gtccttcaca ccttttcaca tgtccctgca taatctctac acaccccctc
      241 ctccctgtta tccctttatt tcctaatgct tgcaggtcct ccaggaagac acaagcactt
      301 acagttgttg agtgattaaa tatttataat cagggcaatg agtgaggtgt tgaataataa
      361 atgctaaggt tgaggcggcc ttagataatt tctgcagatt tcttcatcca cagcctcttt
      421 gattctaagg caaaatcctt ttaattaaca ataat
//
LOCUS       KCOD01000694             391 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 77328pyr ultra-conserved element locus
            uce-3627, sequence.
ACCESSION   KCOD01000694
VERSION     KCOD01000694.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 391)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 391)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..391
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="77328pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>391
                     /note="ultra-conserved element locus uce-3627"
BASE COUNT           95 a           92 c           93 g          111 t
ORIGIN      
        1 gcaggtggtt tcccactgca gggaaggggc tctgacgcca gcacaccttg tgctggtgta
       61 aaactatcta agccgaagtt caggtgaagg gcagccatgt agccagaaag tcatgtggct
      121 ctcatgttgg ttagtatgtc actttgaaca gctcttatct gatattatta tgactaaccc
      181 agtgctgaca gcatggaaca gattacaaga gccatgtgat gattatttaa ggcatcgctg
      241 agtataacac acggctaata ttaacccctt ctttccagag cagctcttcg ccctgggagc
      301 tgggagcact ccctcgccac gcttgctcta tttcagacaa ggctattttt gaatcatttc
      361 tctgtttcaa tgtggcctta cagtttggag c
//
LOCUS       KCOD01000695             643 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 77437pyr ultra-conserved element locus
            uce-7722, sequence.
ACCESSION   KCOD01000695
VERSION     KCOD01000695.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 643)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 643)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="77437pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>643
                     /note="ultra-conserved element locus uce-7722"
BASE COUNT          179 a          119 c          173 g          172 t
ORIGIN      
        1 cttagtatcc aactcccttc ccctctaccc taccctggtt aataatgaaa ggctatttta
       61 agggactgga gttcagtaac acatatccag gaaaatgcgg acatcagtgt ttaacctaag
      121 cacagttcct gggcaatggc tttgcaaaag gcattgctca gagttaggaa gtcgctgttg
      181 cagggcaggg aggacagggg gatgggacaa acaggtcctc agatggggag agctctgaat
      241 cataaacaca ccatagcttt aataaaataa atgaagtgga gccttttcag acgagggcag
      301 actgtattgg ggcaagccgg gcttttaacg ttgggagtga aaattgacag gctgagaact
      361 gggacataaa caaaaatgtc agtccctggg agtcttgttc actggacaat gtctcaattg
      421 tttcagtgat ttttcgcagg cagcagggga tagtgggaga tttaactctt tgctggccat
      481 gcaggagctg gaggtgcttt cagagtgaag aagtggcaga aaagagcagt ttggaaatga
      541 ttaagcaggg aaggtcacac tgttctctgc atacttatct gctgttaaag ttgggctttg
      601 cacttcttta gtttttctcc ttgcttgatt tatgtcagga aaa
//
LOCUS       KCOD01000696             700 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 77546pyr ultra-conserved element locus
            uce-2298, sequence.
ACCESSION   KCOD01000696
VERSION     KCOD01000696.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 700)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 700)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..700
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="77546pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>700
                     /note="ultra-conserved element locus uce-2298"
BASE COUNT          230 a          115 c          122 g          233 t
ORIGIN      
        1 gattaggttc agcataaaca attgtctgaa gggaagatct gactaacaga aaccaaattt
       61 acacccaaca aacattgtgt ggatttgatt gagctttaaa aaaataatga agagctgcat
      121 gttaaatttt ctacaatgtc atgaattata atgctgaatc cagtgtcatt aaattgtatt
      181 tgtttcttgt cagctacaac aatttcagca aagcacaatc cgtgtgaaag tatgaataaa
      241 attcagggag tagcatcaag gacttctgag ctcaggaaac tgagtttggc agtgctaatt
      301 tgtattaaag ttgttgttgc atgacagcag gaaaaagatt taatgcttgc cacctgaatc
      361 aagccatgga acattggttt ctgtaactgc catgaatttg aatcaaggcc aatatctcta
      421 aatttgaaat aaactgatac tctgtcttga aagaagatac aggccactta tgttgcagaa
      481 ggtatttaga aaatgtattt caatttaatt ttcagcagta tatatctttc aaatttttag
      541 gcactttagc actggctttt tctatattcc agcaagtatg tagcttttca gccatttatt
      601 tatcaatatc cagtcttgaa ccacaagacc acagatgctg gttttactta ctatgcagct
      661 gcttacctta atctgaaagt catttttctt ttgtatataa
//
LOCUS       KCOD01000697             908 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 77658pyr ultra-conserved element locus
            uce-1260, sequence.
ACCESSION   KCOD01000697
VERSION     KCOD01000697.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 908)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 908)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..908
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="77658pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>908
                     /note="ultra-conserved element locus uce-1260"
BASE COUNT          175 a          269 c          198 g          266 t
ORIGIN      
        1 gttgagagct caccccatcc agacttgttt tgattgcttt ggctgggtac atcgccccag
       61 ccccctgagt tctttgtctg tgtggcagag ctctcccacc cctcagttcc tttatcagac
      121 ttcccctcgg gccgtggcat ctcttcaata tcccacacgg tatcttgctt aatttgagtc
      181 tggccccagc cggtgtttga aagcactcgg gggtccaagt cagtcctgct cagcaaagtc
      241 tgcaggactg cctggcaatc aggatgcgta ggcctgtatg atcggcgtcc agaattgtga
      301 ctgtcactac ttcctgcttt gtggttgctt ccagtgcttt gacctccaac ctcacttccc
      361 gcagagctgg aagatcttcc ccaacaggga gcctgggaat tgccttggtt ttcaggaaga
      421 gggtggcctt tttgattgtc ccatgctcca gtgctagaat ttggttggtt tggaccactc
      481 cactctccaa tcttcagttc atcagaccca gacagctgtt tccattctcc ctgagagacc
      541 ccagatgtta atttgttccc ttcaccccat ttgctttcat ttgcatgctg agggccaaag
      601 ttccaagacc caccacccgt agaccggtta ctgctatccc aagaatcact tcttgaccca
      661 ttaggttttt gaacagaagc tcctttccag gagtcctctc tatcctttcc attgttccca
      721 tggtttccag aattgctctg cccagagact gtgtcagttc cagaagaccc cctagctgta
      781 ccccaagatc caacactccc agtctttctt tctccagtgc tttgagaagg ggtgtcagtg
      841 ctcctggaag ggttccccaa gcccatttca aagggcattc ccttattctc catagggttt
      901 ggtgaact
//
LOCUS       KCOD01000698             459 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 77768pyr ultra-conserved element locus
            uce-6779, sequence.
ACCESSION   KCOD01000698
VERSION     KCOD01000698.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 459)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 459)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..459
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="77768pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>459
                     /note="ultra-conserved element locus uce-6779"
BASE COUNT          130 a           88 c          103 g          138 t
ORIGIN      
        1 cagctttctg ttttgtgctt tcttagccgg tggcttgaaa gctagatacc ccagccatca
       61 attgccgaga cattttgtct tttgtgacat tgaggaaaag acaaggaagg gaatggaagc
      121 aactaaaaaa tgtcaaaaga tcaaaatcaa tgggctgaag gaatgtgatc tgtttatcgg
      181 ggtgtagctg ctctttctgt ttgcattaag tccgagtgag tgtctttggt catcactaaa
      241 cttgctttta ttcactccct aggagatgta atacaagcat gaaacggtgg ctcacaaagc
      301 aggcgcagca gcaaataaat aaaagggctt ctttaaagac cacaaaacca ggtttattgc
      361 cttctcatat taaacacgct taccttcctc ttgaaacttg ttgctgagca cagcaaatgg
      421 actatgttgt gttgacacgg gtgtcttgtt tctgtgtta
//
LOCUS       KCOD01000699             567 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 77874pyr ultra-conserved element locus
            uce-2909, sequence.
ACCESSION   KCOD01000699
VERSION     KCOD01000699.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 567)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 567)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..567
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="77874pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>567
                     /note="ultra-conserved element locus uce-2909"
BASE COUNT          190 a          123 c           92 g          162 t
ORIGIN      
        1 tattacatta tctcacaaaa ctaagatgtg atagtcaaaa aggaaacaca cagtacggat
       61 ctgttgcaca gcatgcaaat aatagcatac cttatctggc caccactgca agtcttctcc
      121 taaagaaaca ggactttgaa caggtgtatt cttcttgtcc aggtttggtt ccccttcctt
      181 acttgttgag cctctttcat tatcaaatga ggctccatca agccaccttc gttcacgcaa
      241 acgtaaaacg gactcacgtt cacgcaacag ctcagagtct ctctctaagg gaagaaggag
      301 aactggtatg caattgggtc acaccagtgg gataaaagta agccactctc tagtaaagac
      361 ccttcaggat gcaactaaca gcagttaatc tactcacaca gattaaaaat atagtcctga
      421 catgcaacat tcaatatatt aactctttca agaataggta ctttagaatt actaaacata
      481 aaataagcta gaaatagttt tgtgcactat tttcacttac attgtaagag gccaaatatt
      541 ttacactgct atttaatttt atcaatg
//
LOCUS       KCOD01000700             565 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 77981pyr ultra-conserved element locus
            uce-3911, sequence.
ACCESSION   KCOD01000700
VERSION     KCOD01000700.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 565)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 565)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..565
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="77981pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>565
                     /note="ultra-conserved element locus uce-3911"
BASE COUNT          198 a           93 c           99 g          175 t
ORIGIN      
        1 agtgaaagtg gcacagaggg ggttaatgga atgatgaggc aaaaaactgc agtgccagaa
       61 gaattcccca aagggtaaac aaaactctta actgttgcaa acaataaatt gtcaatacct
      121 tgtagaaaca gtggataatg aaaagttata atgcctatag ttagtatcct ctttaaaaga
      181 atttacacag gatatgaaat taaattctgt gcacagttct cttaatttgc ccttaattaa
      241 acaatactcc ataaatggtg cattcagtga ccaaatgttc agagacagca aaatggtggg
      301 tcccaagcca ttaggaatga aataaagtca gtcccctgag agcctgctag aatctggtct
      361 atctaagtga caactgatgg tttaggaaag ataattaact ttgcaattac aaaccgcagc
      421 tttcaccaat gctgtttctt tcagtattct cttctaaatg ttctactgtt agataaaatt
      481 ttttaaaaat gctgagttca taggggtcca tttttccttc acaaatataa tttgaatatt
      541 ttattttaaa tatttcagat catta
//
LOCUS       KCOD01000701             631 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 78088pyr ultra-conserved element locus
            uce-831, sequence.
ACCESSION   KCOD01000701
VERSION     KCOD01000701.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 631)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 631)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..631
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="78088pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>631
                     /note="ultra-conserved element locus uce-831"
BASE COUNT          181 a          135 c          125 g          190 t
ORIGIN      
        1 aatgattact gtgtggcagt tcctacaagg aatatttaat tcattagact ataatcgaaa
       61 tacccagttc acaaaacatc ctgtttcacg tggaattcca gaaacttttg taagctggca
      121 aatcagacag agagaaacaa acaaacaaga aacaaaccca accttgattc cagagacatt
      181 ttttctcccc atcatgaagt gacaaaaaaa tcccttcatt atgacctact tgtctagaaa
      241 cggactttca accccatggt taggctaaga tttgctctac tttctcccta gggcataatt
      301 gtcagactga cttaccgtgt gccttttagc ctttgttctg cctctcacgc tgacatcagg
      361 gaagcagtga tgtagaataa agcaggggtg ggctaggtta gtccactgtt tgtgtcgttg
      421 tgtggtgtgc agggacactc tgtgatactc tagtgagctg ctaagctttt tttgtaggct
      481 ttgtgtcatt tacttaacga ccaatctcat tagctgccag ggtacaatgg gctgatgcat
      541 tttctatgta catactctac acagtgaccc tcaaggttgc cgaaggtcta tttaatcagt
      601 caaaatgctg aatatatttg cagtaaatca c
//
LOCUS       KCOD01000702             872 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 78197pyr ultra-conserved element locus
            uce-3096, sequence.
ACCESSION   KCOD01000702
VERSION     KCOD01000702.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 872)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 872)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..872
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="78197pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>872
                     /note="ultra-conserved element locus uce-3096"
BASE COUNT          232 a          163 c          168 g          309 t
ORIGIN      
        1 accagtcctg gtcaagctcg gatgaagcaa atggaactat ttaaacctac aggacctcca
       61 gttcttaaat atgtggaagc agttcatctt ttgtcatgct gctatgaaaa ccttcccagg
      121 atacagagtt acttttcaaa atgcttcatg tttattttgt ttaactgtac gtactcttca
      181 ggtgctacgt ttaactcctc tttttcttct ttagatctct gcagcgatta tatttggaaa
      241 aactgtatat ctgaacactt aaatgtgtgt gagtgcaagc agttttacgt tcagattttc
      301 tcttcctgtt tagataacaa atctcacttt ccttgtgtgc ttgcactata ggtttgggac
      361 tgacaatagc tgactaacat gtcctgagct gtgagagggc atagcaagaa ggccttcatg
      421 cggtaatgac ccttttcaga gacaatggtc atcatggatt atgcgtttcc aattatttgt
      481 tcatttattt atttttttac atatttctaa attagaaacc tcactgcttc atggcagttg
      541 gtttgctatt gcttccaatt ctgttaggat gccattttgt actagaggtt tttctgtgat
      601 catttttaga taggcaatga tgtagttcat aaatgattta ggccacaggg ttgggtatga
      661 tggtacacag ttgtacatcc acaaaatgga gtattaaatg tagtttcaga ggacttctca
      721 actttgtggc atttaaatac aatgcaagat cataccatat aaccagactg tgtaagggga
      781 ttttgtgtta acatcgacag tcccttacca tccagatggc tgcaggatta gtatgtgcct
      841 gcatgcatat atattagtcc cattccctat ct
//
LOCUS       KCOD01000703             321 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 78307pyr ultra-conserved element locus
            uce-2777, sequence.
ACCESSION   KCOD01000703
VERSION     KCOD01000703.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 321)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 321)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..321
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="78307pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>321
                     /note="ultra-conserved element locus uce-2777"
BASE COUNT          109 a           60 c           60 g           92 t
ORIGIN      
        1 ccttcccttt atcttcatga actgcgtcct agtgggctga aaattttagc cacttctcac
       61 atttctagat gaaccctttc ttcaatcaaa gatgatgaag tgaaatgaaa ttatgaaagg
      121 cagaaaacat agagcctaaa gtgtgaccta ggaatcttaa ttttcctcaa tcattgctgt
      181 aacggaatgc aagcctgcag cagcgggggt gaaattatag tacaaattac catgctatgc
      241 cagataaatt attctctgca gcatggttat taagtgatag ataaataact aacactgcag
      301 gactgattga caaaatataa g
//
LOCUS       KCOD01000704             577 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 78404pyr ultra-conserved element locus
            uce-2034, sequence.
ACCESSION   KCOD01000704
VERSION     KCOD01000704.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 577)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 577)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..577
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="78404pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>577
                     /note="ultra-conserved element locus uce-2034"
BASE COUNT          197 a           95 c          100 g          185 t
ORIGIN      
        1 taattaataa ggtataatat gcaaagcaca gtaatttcaa acagcttgta atgtctctaa
       61 tgtactttca attttttatt ttacataagg gctatattca ttatgtggtt atgataaaca
      121 tactaatgaa ttttattaca ggaacaaatt taaacatgta aatgagatca aatagtatta
      181 aaatgcaaac gatggggaaa cttattacaa actaaccttg ccaacataca tggagggatg
      241 ttacaaaagg actcgggaag ctgcacactt ggtacaaagt cagtgcagtg ctttcacaaa
      301 gtcactgaac acaagaattt gtgaactctc cataaactct cttgaacaaa aaaagttaac
      361 tcgaatcgtg ggcttgcacg taactttggg tgacaattaa aatccctttt cttgttccag
      421 tgaacagtaa tctgtgcata attacattca aatgagatat tagcattttt tgtgcttact
      481 ctttgttaat tgcagagttc actcaccatg gtgatgcttt tgatagaatc aagcaacctt
      541 attgacctga tgctgcaagg catgtttgga aattctg
//
LOCUS       KCOD01000705             458 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 78504pyr ultra-conserved element locus
            uce-7648, sequence.
ACCESSION   KCOD01000705
VERSION     KCOD01000705.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 458)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 458)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..458
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="78504pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>458
                     /note="ultra-conserved element locus uce-7648"
BASE COUNT          151 a           81 c           79 g          147 t
ORIGIN      
        1 aataataata ataaatgtta atcaaaaaac tgcatgtgtc tttctgattg tgccagtgtt
       61 gtggtattca attatgcaat tttcattggc atattaatca tcttttcaac aaacaagcca
      121 gcgttaatta aagcaaacca tggataaaga catgttgccg gatcatcatt ccgtttatca
      181 cagcgcacag gctggccgtt aagtaaattc tggactgtga gatgaatttc aatgttggct
      241 tcatcttttt tgttggagtt tgaatgaaac tcatctacaa caacaacaaa cttcaggctt
      301 cacaagagaa agatgaattt atttgtaatt aatggcaaaa gaagaaagat aaagtagttg
      361 tatacttcta atgggaatta gagtatttca aactaaacca tttttgttct gtcttccact
      421 gctcccattc ttaccctact cagagccctg agagcaag
//
LOCUS       KCOD01000706             705 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 78613pyr ultra-conserved element locus
            uce-5820, sequence.
ACCESSION   KCOD01000706
VERSION     KCOD01000706.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 705)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 705)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..705
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="78613pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>705
                     /note="ultra-conserved element locus uce-5820"
BASE COUNT          212 a          124 c          148 g          221 t
ORIGIN      
        1 ttacgccttc ttgtttacga tagaagccat aatgaattcc accctgccta ttgtagagta
       61 ctgtaagagc agccactgta aaacaagctg tcggcatcca aaatgcagtt tctcacccag
      121 aaacaatgta ataagaaaaa taattagatt ctgtgattag cagaacacag tgaaattata
      181 taaggtggtt ttgattgcag atgttagcac tttataaatt tgcattggaa tcttatttcg
      241 gccagtaaga ctgactttca agcaacagta agcagggtat agttaaccac tgaagcagaa
      301 atttagagtc aatgagtaat tattaagagc tttccagaat attagctgtt tcagttgctg
      361 cagtgatgga atagtctatt agatatttct gtttctggca actcctgaga attgattctg
      421 atatgaaaca acgagccatt ttgatcaata ctgtaattac tctcattgat ggattgtttt
      481 acaatgatag tcatcattgc aatgtgtctg ctcaggaggc atcagggctg tccgctgcat
      541 gcagtaatgc accacaaata tcggattcaa atcaacacac tattgagact gggctgacaa
      601 gcgtgaaatt aattgttcca cttcatgtaa ggcctgcatt cttcttttga gagagtaatt
      661 tgttgctgtg tgtagcctgg gaacttcggt gccatgttag gtgtg
//
LOCUS       KCOD01000707             627 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 78720pyr ultra-conserved element locus
            uce-7248, sequence.
ACCESSION   KCOD01000707
VERSION     KCOD01000707.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 627)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 627)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..627
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="78720pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>627
                     /note="ultra-conserved element locus uce-7248"
BASE COUNT          214 a          107 c          120 g          186 t
ORIGIN      
        1 aacaaagctg gtcatgatga attccaagct ttaccttctg acttttgcag agcaggctgt
       61 atttaccccc aaatggaaga caatttatcc agaaaatgga tgaaggtttt ccagggatat
      121 tataggttag caagcatcgg gttttattct ttatggaata aggatcacag tttctacaga
      181 aaataatgat aaaatttagt gaggatgtca ggaatgaaga ccacatggtt attgtgagtt
      241 taacctttct cttgtggctg atggaggcca atgcagtatt ttattatcaa cactggcagg
      301 tgatttatta caactgtttc tactccagta aaaccacatt aggctgtgct tgatgtatca
      361 tttgttatct tcgaactccc tatacacttt ctgcatgcat aatctctttc ttctaacaca
      421 cttcaacaga aaaaggtaaa tatttaagtc atgattccaa attcatcaac agcttaggga
      481 ctgaaataca gtaggtgcaa gacaagatgc caacataaag cgagtgatga aattcgtctg
      541 aaacagcagc catgcataat aatgcattaa ggtagattca ggagtgacag aaagtaaata
      601 attaagatac ttcaaataag aacagaa
//
LOCUS       KCOD01000708             707 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 78829pyr ultra-conserved element locus
            uce-7975, sequence.
ACCESSION   KCOD01000708
VERSION     KCOD01000708.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 707)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 707)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="78829pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>707
                     /note="ultra-conserved element locus uce-7975"
BASE COUNT          183 a          166 c          175 g          183 t
ORIGIN      
        1 gacgtacagg tggctgctgt cacacctaac gggatcacct tttgtttctc ctcccacatt
       61 ttattttggt gcagtgcaca cgaacgcagt gtctaggaca gatgtgctac ctatagaagt
      121 ctttagctgt gaacccttaa tttgcagctg gaactctaat aaacagtgca tagtgtttca
      181 atagccttct gcttatatgt ttgaagattc gaaactgaat ggtgaggtgg ccaaggcggc
      241 gctggcaaac gaagactgtc cccacataga ccaggctatt acgcctgatg agggcctgcc
      301 ctttacccgc tctggcactc gggagagata tggaccctgc ttcctcttat caaccgggga
      361 atatccctgc ccgcctgatg gaggaataag aaagggtatg tggggccctg taaccacata
      421 gtcagcagcc ggtttaaata actaagagaa agtcagctta gctgtagcac gcgatagtgc
      481 gcttgctgta gagatgcacg tttgggctgg aaaccaccac ctgatgtctg catttggagt
      541 ttctaaccta tttctttcag aaagaaaagc ctgaggagct atgctaggca gtcccacccc
      601 agacggtgca ggaagcttta gtggggaatg ctctactatg tccttaaatt agcccatcct
      661 gtaagaagag accaattaat gtaccatagt aatgaaggtt tgccact
//
LOCUS       KCOD01000709             262 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 79041pyr ultra-conserved element locus
            uce-1759, sequence.
ACCESSION   KCOD01000709
VERSION     KCOD01000709.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 262)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 262)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..262
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="79041pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>262
                     /note="ultra-conserved element locus uce-1759"
BASE COUNT          101 a           36 c           44 g           81 t
ORIGIN      
        1 agaaatgcaa ataggtggaa agcagtgaca ttaataggaa taagattatt aattgctgag
       61 catatttcag cagaaatttc tgaaatgttt caggttacac aatgaaacag gctggaaaag
      121 cataaaatga caataattga aatgttctct ttgaaacctt ccattaaaaa ggatcacagc
      181 ttattgcttt taatatctgt cagaaagaca ttaaaggtgt tttatgacat ctatgccaac
      241 atttatatta tctccatgat aa
//
LOCUS       KCOD01000710             579 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 79246pyr ultra-conserved element locus
            uce-1695, sequence.
ACCESSION   KCOD01000710
VERSION     KCOD01000710.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 579)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 579)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..579
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="79246pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>579
                     /note="ultra-conserved element locus uce-1695"
BASE COUNT          185 a          118 c          114 g          162 t
ORIGIN      
        1 tttgactgct gcaaaataat cctcactctg cttcttccca tgaactgtaa tacaaggtcc
       61 aatagacagc ctcagatgca tctcaggtcc agtacatgct tttcaaactt aatcaaggga
      121 atacagaaat gtatataaaa agatgaaagt gtctttgcct ttatacatac tgaagaaaag
      181 tgagatcttt cataggggaa ggttaagtct gatgctaatg cttatttaaa atggtgacag
      241 tctgaagtag tgaagccttg ccgggctgct ttaatttctc cctggaatag ctctctccca
      301 accttcggca gcacatcaaa gtctctggag ctcaattaaa attggattat attgaaatgc
      361 tctatctatg gaactgtgtg ctcactaaca cttttctttc agtaatactc cagatgacag
      421 ttgcccatcc caatttaaac agttgtcata gagaccatga actaaagcag cagtaactaa
      481 caatacaaag gaaaggtaag tggtaagatt tctgtgaatg aagggctcgg tttgcagccg
      541 cagtgctcac actgcaagca gctaaatgca gaaagcata
//
LOCUS       KCOD01000711             488 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 79352pyr ultra-conserved element locus
            uce-5054, sequence.
ACCESSION   KCOD01000711
VERSION     KCOD01000711.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 488)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 488)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..488
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="79352pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>488
                     /note="ultra-conserved element locus uce-5054"
BASE COUNT          140 a           97 c           93 g          158 t
ORIGIN      
        1 gctttatggc aatgaggggg taacatacct tcattgttca taaaatgaca gctcctaatg
       61 gaccatatta gctttaacac aaactattaa atccttttca ttaaattatt ctgcactcta
      121 ttttggaatc ttgttagctc tgggaagtag gtgcaaactc ctaaggaaac atgagcacac
      181 attgagacta ttatagataa tgtttattaa ataagcctct gaggatgttt ttcttgggtt
      241 gctctcaagc attttgacgg agtcgtgttc catgtttgag gtcccatgtt tcttcctctt
      301 aaactatgag cagctgtagc acatgaccta cttctgtaga accctgtaat gatttccttc
      361 cttcagtggc ttcaggagtc cctcttctgc cctgtgaaaa aaagggacaa atattttaat
      421 ccaagcaaaa tgctaaagca ggttttgttg gtttcaggga agaaactcaa tacagctaca
      481 tcaccgag
//
LOCUS       KCOD01000712             508 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 79459pyr ultra-conserved element locus
            uce-2502, sequence.
ACCESSION   KCOD01000712
VERSION     KCOD01000712.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 508)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 508)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..508
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="79459pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>508
                     /note="ultra-conserved element locus uce-2502"
BASE COUNT          138 a          104 c           89 g          177 t
ORIGIN      
        1 actgatcact agctagacct gaggcatccg agaagtactt aatcacttac taaattaaaa
       61 aactatgttg tggtttattt ggagatatct tacactttgc tgaagtctcc agggcttgct
      121 gacattcctg actctttgtg aatgagttat tttcccttca tttgtttagc tctttaccta
      181 attgattttc tgtgctaata cactaaaggt ctgaagaagg cagagcctca ggtgtgacag
      241 atgaaataag gtgcttttag tcattgcttt tatcttccat gtctaatgtg ttggttacat
      301 ctgtgcagtt taacagcaaa atcaatacat catttactgc cagtatctga aagaatttgg
      361 aagcctgttg gtactttaac tattaggttt cccctgaaag gccttcctca ccctgctcct
      421 cctgaagtca aacattgcag gaaaacaaga tccttttcta tctcctgtgt atgcatttaa
      481 gtttattaaa ccagttacct aactacct
//
LOCUS       KCOD01000713             398 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 79559pyr ultra-conserved element locus
            uce-1056, sequence.
ACCESSION   KCOD01000713
VERSION     KCOD01000713.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 398)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 398)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..398
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="79559pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>398
                     /note="ultra-conserved element locus uce-1056"
BASE COUNT          145 a           69 c           49 g          135 t
ORIGIN      
        1 ttattaaaat gaatttacat gttatattcc ataggtagtt acacaatagt gtttatacag
       61 gaaaaatata atgaaccaaa ctctttgtat ccagctctcc acaattaaaa cgaagactcc
      121 ccaagtaata tcaatctagg agagactaat taagtttggt ttgataacca ttcatttctt
      181 ctattgcctc tgagcaaatt gtttattaga gaaagttatt ttacacaaat caaatcaaac
      241 tgggtaaacc attatatttg agagaaacct tagccatcag tcaattaatc catcattttc
      301 tccagacact tttgtttaac gagcagatca tattatcaac aatttagata tcctatgatt
      361 caattatgac agaaaattta ttgacagctt ctctaata
//
LOCUS       KCOD01000714             567 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 79668pyr ultra-conserved element locus
            uce-1174, sequence.
ACCESSION   KCOD01000714
VERSION     KCOD01000714.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 567)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 567)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..567
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="79668pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>567
                     /note="ultra-conserved element locus uce-1174"
BASE COUNT          173 a           96 c           98 g          200 t
ORIGIN      
        1 acactatatc acccgaccct tgttgttctg tgaccctaat taatattata ctcagtgaca
       61 tttatgtatc agagcaataa gctaaacagg aaacaattta tgtcacctaa agctttttaa
      121 caaatcgatg caactatttg taattgcttg tttcacaaga ttaaaagtac tcagccttga
      181 tcttcgccca cagttttgtg gccaacatga cctgtgcttc cgttgtaaaa taggagtgtt
      241 ggtgatcagc acctatttcc atcaagtaat ccatattgct aatatttctg gaattttaat
      301 gtagttacaa tttatagccg atcaaatgtg gttacctaaa ttgctgttgc tagtagacag
      361 tttaactgtc tttattaatt acagtataat ttaatgtttg agtacaggca cttgtgttgg
      421 tcatttttac agccaaagca gttatgtgcc ttatgacgaa ccattttagc attttcaatg
      481 gaaatttgct aatatgatga gtgataaaaa tgtcaaactc tggtaaataa tggttattgc
      541 tttggctgga attaatcctt gaaagga
//
LOCUS       KCOD01000715             659 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 79777pyr ultra-conserved element locus
            uce-678, sequence.
ACCESSION   KCOD01000715
VERSION     KCOD01000715.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 659)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 659)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..659
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="79777pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>659
                     /note="ultra-conserved element locus uce-678"
BASE COUNT          184 a          121 c          140 g          214 t
ORIGIN      
        1 aatgtttgca aattttcctg actacttgat tagaaaacgc accaagtaca ggcatcagtc
       61 aagtatgcgt tatttaagtg gttggtgtct ggtgacagtc tggaaactgg aattgttgtg
      121 gttgcctgta ggaaaatcgc actttctggg agaaattctt tcacctttgt gtgcccacag
      181 cacagatttc tcctcatggc agctctggaa ctttgtgacc tggaaaatgt gggacaactg
      241 acacaaggtg acctcctgaa tgctggggta ggcccaatta atttaaaatt ttgcttggcc
      301 ttgtctcttc caattttcta aatcctctgg aaaaatgatt aatgcgtaca ctgccaaagc
      361 gaaaatattt ttgaccctat taaagtcgac caagggtaaa ccaagtgtag gctggcattg
      421 tatcaaacta gctttattaa atttgatttg aggtttgtat gaggaaggga cagacaagga
      481 cattattttg cacagcaact cccttttaaa atagtgggag gaataccaag tatgtacgtt
      541 ggctatttaa cctagcagaa ttttacctta gtacctcctc actgggaaag catattgttg
      601 gtaaagttta ttatgattgt ttcccttgat tcagaccttg ccttattttc agattttta
//
LOCUS       KCOD01000716             399 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 79885pyr ultra-conserved element locus
            uce-3970, sequence.
ACCESSION   KCOD01000716
VERSION     KCOD01000716.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 399)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 399)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..399
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="79885pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>399
                     /note="ultra-conserved element locus uce-3970"
BASE COUNT          128 a           80 c           81 g          110 t
ORIGIN      
        1 taactgagca atgtagtgtc tgcatcatgt cctctctccc aagtccaggt gactctaatc
       61 ttagctttgc actgtgttcc agatgcggca ggccagaagg ctgtcgaatc cttgtataca
      121 gaggtataca tcaagaactg gtgaatgcag cacgtatgtg ggctctcatg ggccttctta
      181 acagagggct aggactagac actaatttgc actataaaaa ataatgctac cttactgaca
      241 actaactcat caataatata caggtttgca ctgaaaatga ttggaaattt aaacataagt
      301 gatgtaggaa agtacctaat ttgcatgaga gttcatactt tacatttgtt ttgaaactgc
      361 gcaaaagcaa gaattgaagc tacccacaaa ctaatgcag
//
LOCUS       KCOD01000717             399 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 79996pyr ultra-conserved element locus
            uce-3683, sequence.
ACCESSION   KCOD01000717
VERSION     KCOD01000717.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 399)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 399)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..399
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="79996pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>399
                     /note="ultra-conserved element locus uce-3683"
BASE COUNT          140 a           71 c           60 g          128 t
ORIGIN      
        1 cagcaaccag ccttcaaaac gagagctaac tttttttgca gttgtgaagt attggatcca
       61 attactccaa aaaaacagag ttcattttaa taggatttgt agtaaaacaa ggcatataaa
      121 aatcagatgc ataggcaaag aatttttcat ctttaatcat taagctacca gtacaaattg
      181 agccctgcag ttatttcatt cccaaaggag aacagagatt taaagaattc agaggattaa
      241 atatttgtgt ttgaatgaac atgctaagtg tttttgtggc tgctatcatt aaaactgtat
      301 ttcaacactt tatttcaaat gcatacaata cacattctct ctaaatgata gcttgaaact
      361 cttggtcaaa tgtcttatat caccatcctt cccacagat
//
LOCUS       KCOD01000718             597 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 80101pyr ultra-conserved element locus
            uce-3242, sequence.
ACCESSION   KCOD01000718
VERSION     KCOD01000718.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 597)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 597)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..597
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="80101pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>597
                     /note="ultra-conserved element locus uce-3242"
BASE COUNT          173 a          105 c          102 g          217 t
ORIGIN      
        1 tgcagcatgg atttcctttg ttttatacag taactcttgt atgttcatag ctgctgtata
       61 aatattttta ataaaattat tccttctctg tcagagttgc taaattctct atatagctta
      121 aacacttcag tgcatcatta tacatacttt tctatacgtg gcttgcttac aagtatttgt
      181 cctagttgtt ttctactctt tttccttcac ctgtcctgaa tattgccatg aatgtttcta
      241 atttaaagcc agaggagtca gtggctgatt agaagacagg aaattggagg attaaactgt
      301 ctggttgaac ttcctttact tatcagtact gtgtaactca cactgggtta taaactcatt
      361 gggacaattt ctacagtgta tcagtacttc tgttttcttt tttcctggag aaagtactgg
      421 ggaaaatgcg ttgtttgcag ctaaaaccca acacttttta ataacactga agcactggaa
      481 gattaaattt gcacaaatgt cttcaggtat gagaattcat tcaattttaa gtcagcaggt
      541 ctatactata gattaaattc agtatgtaaa caaccaagca acagatactt tcgggga
//
LOCUS       KCOD01000719             543 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 80191pyr ultra-conserved element locus
            uce-5055, sequence.
ACCESSION   KCOD01000719
VERSION     KCOD01000719.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 543)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 543)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..543
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="80191pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>543
                     /note="ultra-conserved element locus uce-5055"
BASE COUNT          155 a           98 c          124 g          166 t
ORIGIN      
        1 aggggaaatg cttcagaatc ggagatttat gaattcgtag taagcagttt cctggcatgt
       61 aaacaaatct cgccgggctg ttttaggaag gtgggtttgg gcagcggagt aatcattttt
      121 attattctga ttttccaaat agaaatggac atatatgata aaaatgtcag gcgcgctctc
      181 cacgtcaggc tcctaacagg attacatgtc agctcttaat gtctcgctct gtttttcttt
      241 gccatgaatg gctgcattat tgctcacagg aacttcactg taatatatgg taagagacaa
      301 gtagctcttt atggccagtg attattcggt ttgaatgaaa cctgtgattt atgtccattt
      361 aactgaaaag ccttgtaaat tcccagtgct gcatttttcc tcaatagaga atgagtcaag
      421 cgaaagtgac aactaggttg gcgtggaaat gtgcagtgca tcgtcgtgtt atatttaata
      481 tacctgacat gaaaaacgtg cacacaccac gcagtcacct taagtaggag tgagagtgac
      541 att
//
LOCUS       KCOD01000720             829 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 80293pyr ultra-conserved element locus
            uce-260, sequence.
ACCESSION   KCOD01000720
VERSION     KCOD01000720.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 829)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 829)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..829
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="80293pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>829
                     /note="ultra-conserved element locus uce-260"
BASE COUNT          298 a          135 c          146 g          250 t
ORIGIN      
        1 tagatttgtt gattatagtt attttattct gataggatga catggaaaaa gaaaagccaa
       61 tacccaagtc tttttacagc taatgagatg agactgaata cagtggagag agaaatataa
      121 gtgaaaattg cattctgcac tagctcaagt ccaaatacat atttgtaata caagccacag
      181 tctctttcac atttgcagca taaaaataac cctcaaacag aaacattaat tgaacagtaa
      241 ctcagattaa tgttttgtaa tattagttca caattattac tctcagctaa ggtcaagaag
      301 tatatagttg gatattcaca aagaaatgac tgatttaaaa acaaagagct ctaatggaat
      361 tcaatagtgc ttttcagtca ttccagttgg catctctatt acctgaaatg attcacagtc
      421 cattatggga gcttccatgc taatagaatg tctatcttct gtaatacaga cacatcaggg
      481 cactaactga gaatctgtca caatgaattt catctagatt tcacttcatc tcttcatgga
      541 ctgtaaaatt tgctcttgta caatgcctaa atttactgtg ggtaattgag agagatctat
      601 agatgcagca cacagtaaaa agcagttttc caaagatcta ttgtaaattg tgcagatttg
      661 gttcagttgg gaaaagatta tgaaatgctg gacaccactg tctgctaatt aaaagctctg
      721 aaaatatttt gaatggatca cggtgaatag aaaagtgaaa acagcagcct ggttaaaata
      781 tctctcttgc agctagaaag gcaacgaaaa agcttttgaa atctaagaa
//
LOCUS       KCOD01000721             593 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 80403pyr ultra-conserved element locus
            uce-197, sequence.
ACCESSION   KCOD01000721
VERSION     KCOD01000721.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 593)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="80403pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>593
                     /note="ultra-conserved element locus uce-197"
BASE COUNT          228 a           98 c          109 g          158 t
ORIGIN      
        1 aatcaccacc aaagtaaagg gtgtttgaga aaccgtaagg gcagaataaa aattttttaa
       61 tgaaaaataa catgtcagtt aataatagag ctgacctatg tttaagagag aaattttaat
      121 catgtgcata ttaaatatta ataacctatt ctgttattgt tataataagg ttaagtaagc
      181 ttctccatgc ttaaggaaag agaaaaagta ggaatatata acagtgaaaa aaagtgctga
      241 gaagcagaga cataaggaaa atgtgtcaac aataaacaag aggaaatgag aaagaaggaa
      301 aagatgaagg tggaaactaa tctctatgtg tcattatgac tgccagagta ctggcaaagc
      361 agcagcatcc ttttatttca attttaatca tttctgaatt ttaataccct gctccttttg
      421 taattctcct ggcattccct atatgcatcc atcccagcca aaacaccagt gtaaattaaa
      481 tggcacgcaa ccacaccact gatgtagctc tcccagtaga accaattgag tgaccaaaaa
      541 gcagagaagg tatgactact ttgatagacc acgggccaat taagtgactt aat
//
LOCUS       KCOD01000722             693 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 80511pyr ultra-conserved element locus
            uce-4295, sequence.
ACCESSION   KCOD01000722
VERSION     KCOD01000722.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 693)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 693)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..693
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="80511pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>693
                     /note="ultra-conserved element locus uce-4295"
BASE COUNT          211 a          160 c          141 g          181 t
ORIGIN      
        1 ggactaaggc tgagcagcag cctctaaccc cttctcctga aacaagctta gtctttgttg
       61 cactgtattt acttctgttt tccaagactg gggaaaagca aacaatgtag aaaaccttta
      121 atttcacccc agctggtaaa aatgatagct ggatatgcac acatcagtat aatcgtctcc
      181 taaacaaatg gcacaatgac aaaccgaggg ggcggggaga gggggagcag agcacaagct
      241 ggtgttttca atttagaaag tatgcattat ttacactgcc attattccac tcaatttgag
      301 ttcacgcttt agtcctaatt tcagtataat caaagtcaat gaatatttaa tcagcattgc
      361 ttccagaaat tgagtaatgc cattaacata atgtccccag gacttcaatg ccgattttcc
      421 tcaaaagcat gggacttcca ctcttcctgc ccaccagttg atgctctgat ccccaccttt
      481 gctgagcctg acaaggtggg acaaatggga gaaacacttc ccaaatgcag agatgtgtcc
      541 ccactgacgc tgaagcccca ggataggtaa taaaagtaga gcatttcact tcaatatggc
      601 tcagtatgga aaagcatcag aacaacaata atccatttgc acttctggag tacctttcca
      661 cggaggggct caaggcattc tgcaggcatt aat
//
LOCUS       KCOD01000723             672 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 80624pyr ultra-conserved element locus
            uce-1899, sequence.
ACCESSION   KCOD01000723
VERSION     KCOD01000723.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 672)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 672)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..672
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="80624pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>672
                     /note="ultra-conserved element locus uce-1899"
BASE COUNT          212 a          142 c           98 g          220 t
ORIGIN      
        1 tatttataaa atacatagaa gtctatcctt gaaataaccg tatcatgaag ttttgatttt
       61 gacctcccta ccaaagacgg acaaagaggt acacacttat attaaagttg tgcattgcat
      121 tttatatcaa ttaaataaat attagacaaa ctcccaccac tctttgttta gctgtgtggg
      181 gctcagctgt gttgcttcta accctaacta catcacttca aattaccagt aaattaacag
      241 agtaacactt tcaacctcag agcagatttg atccaaatag tctttaaatg ccatttctgt
      301 tcctattaac ctgaagatcg gcgcagcaga tattttcgta aggctgccca gcaatacagg
      361 gcattaatgg ctaagttgtg acagcacttt tcatgatgat ttatgattca gtgtttaact
      421 tgattactcc actgctgact ctgaatacta tttcaattag tgcacagaag gtcacatcac
      481 aaatattcct ctataatcta ttcctattaa cactaataca cagagtaacc aaatcttttc
      541 acccttgttg attcaaacca tccatagcac taactgcaga cttgtttacc agtttactgc
      601 tctggacaca tctgaaatgg taattttcag tttttgagta tcattaatag ctgtaccatg
      661 ccatcatgaa ta
//
LOCUS       KCOD01000724             792 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 80733pyr ultra-conserved element locus
            uce-6885, sequence.
ACCESSION   KCOD01000724
VERSION     KCOD01000724.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 792)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 792)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..792
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="80733pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>792
                     /note="ultra-conserved element locus uce-6885"
BASE COUNT          253 a          139 c          130 g          270 t
ORIGIN      
        1 taatgaatgt tcctttcatt ctgcatttct gtataatatt ggaaattgtg tttttattag
       61 aagaggtatt ggatggaagc caacaatttc ttcttttaac ttgatatttt gggctctgat
      121 ctttgttaaa actacaatgg catgtatcta gtacagtcag aggtcatttc tatagctact
      181 accatttcct atcatttctg gggaatgttt gttttcaaaa caaagaattg ggttaaagct
      241 taagtatcgt gtttcagaac atatttcaaa ctgaaattaa gaatgctaaa acctttcctt
      301 taaaggtcag atgatattta ttattattat aaaaatgatc tgtgatttat gaatttaact
      361 tctcgtaaac ctcctttgta acagaatatg cagtcagaag cttaacatta cattgttttc
      421 ctttgacaac gtatccacga gaccactgca gctgttcctt tactcacaat agcagattaa
      481 ttaacacaat catatgctgt tggctcctac tcaatgagta ggtctgcagt gggatagata
      541 ggtaaatcct ttaaatgtgt atgagataaa gaatatacta tagtagtttc ataactagcc
      601 agttttgctt ctgactagtc agccctatca gcaatggttc actgactaca gaagctgtga
      661 gcttacattt caaaggcagc cacacctatt acagagcaat aatgcctgaa tcattgcaaa
      721 actcaaatat gtaaaagcac aggcatgctc agaaatcacc atatttgcta aaataatctg
      781 cttcaagcat tt
//
LOCUS       KCOD01000725             761 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 80846pyr ultra-conserved element locus
            uce-8043, sequence.
ACCESSION   KCOD01000725
VERSION     KCOD01000725.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 761)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 761)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..761
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="80846pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>761
                     /note="ultra-conserved element locus uce-8043"
BASE COUNT          247 a          144 c          165 g          205 t
ORIGIN      
        1 ttgctcgaca agcatgtctc caagcatgtg gaactcccta ctcatggctc accccatgtt
       61 gcacacacac tgccacccag cacacttccc acattgggtc actatcagtt agccctagga
      121 ggcacaattc ctgttccatg tgccccactc tgaaaagttc cttttgcagt gctgctgtgg
      181 ctccagctca ataaaagatg gaacaaaaca ctttgaagaa ataacatatg catccttggg
      241 ttattgtgcc gaaggaagag ataaaacagg aacaaagtaa gaaattatat tgtcagaaaa
      301 aatgtgaact ttttgattgg ggatgacatt tattttaagt gtgcaatgac ggcagggaat
      361 ctgtcagggt aagacatggc agaggtttca acgtttgtta agagcatcat gggaatttaa
      421 ctaaaactgt taaaactgac actattggct tttgttaaca cattaggcat gggaaaagtg
      481 ccagtcagca tatcctccat agcatcagtt cagttaaatc atctggaaga tgcataaaac
      541 tgggtgtgat aataaatgcg acgttttcca cacatggata gagggagcag agagggacag
      601 gaccattttg acaagaacgt cttttaaaaa cctgcacctg ctttgtaatt tagcatgcaa
      661 gagggaggaa ggagtttcag cttttaaaga caagtgaaac aaacttacta agtgcttatt
      721 gtagaaaata acttaatact agagtgtata tttatggaat t
//
LOCUS       KCOD01000726             827 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 80954pyr ultra-conserved element locus
            uce-574, sequence.
ACCESSION   KCOD01000726
VERSION     KCOD01000726.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 827)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 827)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..827
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="80954pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>827
                     /note="ultra-conserved element locus uce-574"
BASE COUNT          221 a          139 c          192 g          275 t
ORIGIN      
        1 gatttcaaaa cagatttgag gttccagagt gcagctatcg gtgcgctgca ggtattgctg
       61 agggccggct gggccgcggt gcttttctaa caacgtttct tcttgtgctc ttgaaacagg
      121 aggccagcga ggcatatctg gtgggtctgt ttgaagacac aaacctgtgt gccatccatg
      181 ccaagagagt caccatcatg cccaaagata tccagttggc tcgcaggata cggggagaga
      241 gggcttaagt gaaggctgtt tttatggtgt tttgtagtta attctgtaaa atactttggt
      301 tttaatttgt gacttttttt gtaagaaatt gtttataata tgttgcattt gtacttaagt
      361 cattccatct ttcactcagg atgaatgcta aaagtgactg ttcacataaa cctcagtgat
      421 gttgagcctc gggctcggga gtgacaagtt gctaatatgc agaagggatg ggtgttcttt
      481 cttgcttctc atgcatgttt ctgtatgtta atgacttgtt gggtagataa acttgtaagg
      541 tactagaatt gatataaatg tgtacagggt ccttttgcaa taaaactggt tatgacttga
      601 tccaagtgtt taacaattgg ggctgttagt ctgaccatgc atcactgtga tcaaatgtgg
      661 acttccttca gagggtgaaa ctacaagtct taaccacagt gtaacttaca gtttcctaaa
      721 aacgtaaacc tggcagctat agaatacact atgtgcattt ataatagcta ttttatatat
      781 tgtagtgtca acatttttaa attaaatgtt ttacattcac atgtgag
//
LOCUS       KCOD01000727             334 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 81057pyr ultra-conserved element locus
            uce-2347, sequence.
ACCESSION   KCOD01000727
VERSION     KCOD01000727.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 334)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 334)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..334
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="81057pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>334
                     /note="ultra-conserved element locus uce-2347"
BASE COUNT          108 a           45 c           65 g          116 t
ORIGIN      
        1 gttatctatt agttcaatta gacatcagac atttattttc caatgtattt gaagactgat
       61 ttgatttggg tccaatcatt taaaaataag agagcagagc tgtgtacaga gctgtgtaca
      121 gatatctgta gctctgaagt cttaattgca aattcagata aggattagaa ggggctgtat
      181 ctctgtagac caaaggtatt tgctaatacc tgagatataa aagtggttaa attcaatatt
      241 tactaattta ggatttccac tttggatttt gattaagctt tttggttgaa aaccccacgt
      301 tattaagctg tgatgaggaa aaaagcaact cttt
//
LOCUS       KCOD01000728             832 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 81160pyr ultra-conserved element locus
            uce-6792, sequence.
ACCESSION   KCOD01000728
VERSION     KCOD01000728.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 832)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 832)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..832
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="81160pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>832
                     /note="ultra-conserved element locus uce-6792"
BASE COUNT          263 a          162 c          180 g          227 t
ORIGIN      
        1 tgatctcaac taggaaaatc taattaaaaa aaagaccaaa aaaaaatcat acaagtgaaa
       61 ccaacaactc accataatgc tcagacaata atcattgggt tgttcaacag tttgcttgtt
      121 tgttttcagc aagtcacagt tttgcttttt ctttgaagag ttgggagcag gaatgaggct
      181 gcctaactgt agtggaaatt tatcataatc cattatttaa aatattctac tttggacagc
      241 aaggtaatat ttaaaagcag tcagcaagaa gtggaaactc tggttttgta acagttcaca
      301 tgtcagactg gcaaagtgcc cacagtgtac ggcagaaaaa tctatttaat gtctgcccca
      361 caaggcgaca tgaggcttga ttggcagaaa gcagagagtg gcttttgatc atgtgtccta
      421 acaagcagtt ccagctcctg tctcttcggc tgagcggctc cacattacct attcaaacag
      481 aagtgacagg ccactgcact actctttggc tctagtctca cgcagtggga gctatgctgg
      541 agtcagagcc actgattaaa tatatcactt tttcaagaca agcaggttgt ctgaatcaaa
      601 gttggacaga atagactcaa cattattaaa agaggatata aaactggagt tgagtgatgt
      661 taggccagtg tgtacagcct cagggattca cagactgaca aggggaataa ggaacagcag
      721 aactcataaa gcagggtcag aaattagctg tgacaccttg gccattttcc catcacttca
      781 gggccactgt gtttcaaatc ctgtagtctc ttaatgattt tctgtgtgga ga
//
LOCUS       KCOD01000729             346 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 81258pyr ultra-conserved element locus
            uce-2365, sequence.
ACCESSION   KCOD01000729
VERSION     KCOD01000729.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 346)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 346)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..346
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="81258pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>346
                     /note="ultra-conserved element locus uce-2365"
BASE COUNT          126 a           41 c           63 g          116 t
ORIGIN      
        1 ttttggatac ttataaatga gatattatat ttccatacat tttatttctg gccacatcta
       61 tgaatctaat attgacctgg agttatctgt gatagagaag ttattaattt tgacagatat
      121 acgggagaag ctaatatcct ccttttacaa acacctaata ttaatctcta gtgatgtaaa
      181 cgagaactcc agaatggctt ggggtggtgc tggaaatgat ataagattga aatttgataa
      241 tgaaaaaggg aaagattcat tttagaaaat tgataaaatg gataaaaaat tgtatttcct
      301 aagaagtaag tgtaggaagc acaacttaga tttagcatcc attatt
//
LOCUS       KCOD01000730             444 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 81360pyr ultra-conserved element locus
            uce-4798, sequence.
ACCESSION   KCOD01000730
VERSION     KCOD01000730.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 444)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 444)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="81360pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>444
                     /note="ultra-conserved element locus uce-4798"
BASE COUNT          159 a           71 c           61 g          153 t
ORIGIN      
        1 tgttccagat attcaggatt caaaagaact ttcatttcct cgctgaaaaa ggcaacagtg
       61 aacaatccaa atgtgaatgt ttatttttgg tcagcgttct gcatgtacta ttatgtattt
      121 ataagccaag tttcacataa agtgcaaatg agaaaactaa aaaagagcaa ctccattgaa
      181 caaatgaagt ctttcctttt tataaagatc aaaaacaaat tagctgcctt gtctgtacta
      241 caatgaagta accatctaat tattccaaat aacaaattac tgaatgtcac aatgtattat
      301 ttgaatatgc ttgatctaga ataattgatt gctgcacaat ctatcactgt ttgtcccaaa
      361 caaaatatgg ttactggtca aatatgcagt atcaaaacat taatttattt tgttttaata
      421 gcctgtattt ttattgtact ttaa
//
LOCUS       KCOD01000731             670 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 81464pyr ultra-conserved element locus
            uce-2882, sequence.
ACCESSION   KCOD01000731
VERSION     KCOD01000731.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 670)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 670)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..670
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="81464pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>670
                     /note="ultra-conserved element locus uce-2882"
BASE COUNT          175 a          104 c          130 g          261 t
ORIGIN      
        1 ttcacatttt aattaagaat tcttgatgct tattttaata aggcatacac tggagtataa
       61 cttggtactg tgtcttgaca tcactcattt tctgatattt ggaattgtcc cgtgccataa
      121 catttctgat tttttctaat cattctttat gatcatgttg attcacagat ttctgaaaac
      181 ctgcttaaac attgaaatat tttagaagag atgctgctgt tgtgatactg tgtttcattt
      241 tgtaattccg tctgctgctc aggccagata tgcattttct ggatgcaatc tgttggtttc
      301 caatggttta ctacatggtg ggctctatcg acaagtaggt gaaataactg ttagaacttt
      361 gtagtctcag tggtttgttg tgtgttgtca ctgcatgttt tagtgtgtgt gttgtagctg
      421 gagataagct gtgtgctgta tttcaaattt ccatttataa aggatctcat tagtagggag
      481 cacaagttaa tatcttcaaa aacataagat taactgttgt ttaggtgagt tcatatgttt
      541 cattatagcc ctgattctag tgtcagtttg tactgagact tggaattcat tgactcaggt
      601 tttgtaaaga tagctgcaga atgtacagtc ttgaataaca gtcttcatct tccactactt
      661 aaattatcac
//
LOCUS       KCOD01000732             762 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 81573pyr ultra-conserved element locus
            uce-6746, sequence.
ACCESSION   KCOD01000732
VERSION     KCOD01000732.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 762)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 762)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..762
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="81573pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>762
                     /note="ultra-conserved element locus uce-6746"
BASE COUNT          205 a          162 c          173 g          222 t
ORIGIN      
        1 caacccacaa acaaaagcat ggatgaatct gctgagctag tttgctgatg ttagaaacag
       61 ttgttcatat taggaacacc taatttaatt tcatgaaaga gacataacat gccagtatga
      121 gtatgaatct aaggtatgca tttcctaaaa ggaactaaaa ctctgtcatt ccaaagttgc
      181 tcttcttttt gacttccagc ttgcatgggg actgctgtct ggaagcagta actttaactt
      241 taactctaag gctgctgatg aggtctgtct gtgtgatctt cgtaagcaga taagggtagg
      301 gagacagctc agagcagagc ttgtttacag caggacagaa gaaaacagct agacataaat
      361 gagggctgac ggtttcatga agcacaattg gttgatcaca gattcaatat gactgccctg
      421 aactgagcga tgatccgtac agtatgcaaa attcactttc ttgctggtct gtgcccacca
      481 gccttccagc agctttccca gagcccctca gccacggctt tgagtggaac cagagctgaa
      541 cgcagcattg ttgtacccaa ttccttttga caacaatcac attcttttaa aaacttcata
      601 ggttttagtt gtcactggtt ataaatgacc ctcgccattg ctgctggctg ttgttgggtg
      661 ctcgctgctc tcccgcagat gtgagtgctg caggttctgg tactcccggt tttcctttgt
      721 ttatcagaaa gcaggcagta aaggtttagg actttttgag tg
//
LOCUS       KCOD01000733             408 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 81682pyr ultra-conserved element locus
            uce-2208, sequence.
ACCESSION   KCOD01000733
VERSION     KCOD01000733.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 408)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 408)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..408
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="81682pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>408
                     /note="ultra-conserved element locus uce-2208"
BASE COUNT          137 a           67 c           77 g          127 t
ORIGIN      
        1 gctgagctct tgcaaatcaa agaaggtcca atactctaga taaatcctca gctaaattgg
       61 cctcaagtat gttaattgta cacagcatgt ataagcaaga tttatttgtc ttcacaggtg
      121 gaaacatttt ctggtgtgta caagaagctc acaggcaaag atgtggtgtt tgaatttcca
      181 gaattccagc tgtaaaatgc aaaaaatggc tgaataaaca actgttcata taactaattt
      241 catataaatt ttgaattcca tattaactgg ttcatgggac tttgccactg ttgacacctg
      301 tgaaaagtat taagttttaa tggtaggcct cttaggtgtt tattggcact gttgcaacac
      361 aaaaaagagt ccagagtctg caaaaagaat ttgtaatgcc taaatatt
//
LOCUS       KCOD01000734             414 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 81793pyr ultra-conserved element locus
            uce-7665, sequence.
ACCESSION   KCOD01000734
VERSION     KCOD01000734.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 414)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 414)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..414
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="81793pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>414
                     /note="ultra-conserved element locus uce-7665"
BASE COUNT          131 a           78 c           73 g          132 t
ORIGIN      
        1 ctccatagcc tgccctctcc acaaacttca gcccctcttc ttcctctgca ggaaatttat
       61 gccctttggg ttcaaaaaag gctcctagag ggaacgagaa agagaatgaa aatgatttta
      121 attttttttt tggcgtagaa atgaaactga tattgaaagt gagtaaattt taatgaaacg
      181 gtgcaaaaat gacatcattt actcagaaat cattaatttg tcagcattaa tatttcagct
      241 acaacattgc ctgtcattct gtgccagcaa tgactgataa atctataaaa gtgtgctgct
      301 aatttactga atatttatgt gcagtgtcat ttgcagagta ggatttgaat ttatttcact
      361 cagtgttcag ctggagaaca tttctaacaa acccaggctg tgcttcccaa ataa
//
LOCUS       KCOD01000735             601 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 81903pyr ultra-conserved element locus
            uce-6311, sequence.
ACCESSION   KCOD01000735
VERSION     KCOD01000735.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 601)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="81903pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>601
                     /note="ultra-conserved element locus uce-6311"
BASE COUNT          176 a           99 c          120 g          206 t
ORIGIN      
        1 gaaaataata aagtgttttc tttgtattga ttgaagaaat atagtgctta ttttttgctt
       61 ggttttctag tacttattca ataggttaaa gggcaatacc atctgtttcc taacaggaca
      121 ttttgtgtaa gatttgcaag tcctacaggt acctttaagc atggataaat atgcactcat
      181 ggtttcagct ggatagtttt tcaccaccaa aggatgatta tgttgtgtgc cttgagacat
      241 aggctataat atatttcctg tccctttatt gcattttgga atcataaaca atgactgttt
      301 ggctcaaagc catttattca gcccaaaaag acattatttg cacaacaaaa atcaataaaa
      361 atgttactag gtctggctgg atactttgct taactgtgat atttgtctgt cactgatggc
      421 atgccatctc tcgtaggaga ctggggccaa aacagagcta ttgatccagt catcagtgat
      481 ggatactggc atttggaacg ggctgctgca gagaatctcg attaaaaaaa tatttctatg
      541 ttttgcctgc agcagagtca agataacctg aatgaggaga ttttctcttt tatattgggt
      601 t
//
LOCUS       KCOD01000736             583 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 82006pyr ultra-conserved element locus
            uce-6797, sequence.
ACCESSION   KCOD01000736
VERSION     KCOD01000736.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 583)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 583)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..583
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="82006pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>583
                     /note="ultra-conserved element locus uce-6797"
BASE COUNT          174 a          113 c          126 g          170 t
ORIGIN      
        1 gcagcacttc aacatttgtt gtgtttacca gtttttcaaa ggcacttcaa aacagtagga
       61 tgagcctcag gtcaatgcag ctgatttcta acttttatgt ctctcccctt tccaagggag
      121 gagctgcaga gggagccagt gacaaagagc caaggtctgt aaggttttcc caagagcatg
      181 taacaaatgt aggaggaaga ctataaatca ggatccaaaa tgcactgtcc acggcagcag
      241 ctccgaacct tcaacaagac atttttcgag caaggttttg gaattttggt gggctctgac
      301 ctgcagtttt cacttccaaa ataacttgac ttttctaaag tggtaatttc attttcatga
      361 taatgctaaa ctcaagccac atgtgcttta atttaaagca ggactcaggc agtggaccct
      421 gccaagaaac agtagagaaa catgcttatt ctactagttt gcttgaggca ttcagcattt
      481 ttgaatgcct aggcagaaat atagttttta aataagccaa tcccgtgaga gcagaatttg
      541 cattaagctt ttgttgtatt gggtggttaa ataagaactg atg
//
LOCUS       KCOD01000737             558 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 82115pyr ultra-conserved element locus
            uce-5789, sequence.
ACCESSION   KCOD01000737
VERSION     KCOD01000737.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 558)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 558)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="82115pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>558
                     /note="ultra-conserved element locus uce-5789"
BASE COUNT          177 a          106 c           97 g          178 t
ORIGIN      
        1 gactttgaaa agaatagagt ggtgattaac agcaatattt tttttaatga aacacaacct
       61 ttcatccctg tcatcttctg accatccttg cttgtacgca gctctctgac aagtagaata
      121 ataacggtca tacatcactg ccctgaaagt ccaatcatct aaatcttcac tcgctgcagc
      181 ctctgagact caattacttt attgacatgc aatcttcata aggggagaaa tattgtgcat
      241 gtaaggtcac ttggttatga agacatatta tcatattatc tgcatgaggg ttgcagggct
      301 aagacctgac agagctaatt ataatggtac atgatagaga gctcagtaca cattatttgc
      361 ttggctgaaa ctaaaggtga ggtaagacca tgacatcatg gtttcaaaag aaaataattc
      421 cctttccctt agagactatt acttttattg tttaatgttt tatatagatt atattcatac
      481 actcctcatg caagcaagca gtgagaattt ctgaattcaa ctgtttccat ttggaagtac
      541 ttaactcttg aagaaacc
//
LOCUS       KCOD01000738             879 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 82222pyr ultra-conserved element locus
            uce-949, sequence.
ACCESSION   KCOD01000738
VERSION     KCOD01000738.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 879)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 879)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..879
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="82222pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>879
                     /note="ultra-conserved element locus uce-949"
BASE COUNT          252 a          144 c          195 g          288 t
ORIGIN      
        1 aaaggtctgc agtctttcaa agtgtcattg ctactaactg gagcttcata gaggaaaaaa
       61 tcagagttgt tctttcaaag acacaaatta caatgtgctc cagatgaagc cagcaaagcc
      121 atggagaggc tgcagtttct gctgggtctc atatgatatt ttggtcctgt gaacacggag
      181 ctcctggatg tttttgccac tcatgttgac agtttttcag gtcactcctg tgcaactcct
      241 gctgcatatg ttgcaggaca tgtggaaagc cattagttgt ttctgtctgc attactgtca
      301 ttctaaagta caatcttgcc atgcactttg cactacgagg gctaggaaac cagtatcttt
      361 tatagtaatg acttccagtt tacagccttc atttgttata tttcctcaat agctgttgtg
      421 ttgagattaa ctgcataaat ggtctgcagc tggctgttat gaattaaggg agtttaatca
      481 aagtatttct aatgtacagc ataatgataa tacatggggg aagtactatt taagagataa
      541 tgatggcttc agaagatcac tgttgtaatg tttagtgcat atgccttcag cattgaattt
      601 gttgttgttc tgaatatgct taatggatca gtgaaaagct gcctaatgtg ggattgtttg
      661 atggggctga cagagctgga attagcccat tgctgtttac tgcatacagc cattaagatt
      721 aattgctgcc agataatttt gactgttttt atcttcggga aaaagtgtca ctaatgggtt
      781 tataaattgg ttcactatta ctaatagtaa ggccagtgta acaggagagg atgtgagcag
      841 ctaattctaa agataaaggt aaaaagtata aagtactat
//
LOCUS       KCOD01000739             664 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 82332pyr ultra-conserved element locus
            uce-5481, sequence.
ACCESSION   KCOD01000739
VERSION     KCOD01000739.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 664)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="82332pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>664
                     /note="ultra-conserved element locus uce-5481"
BASE COUNT          234 a          101 c          112 g          217 t
ORIGIN      
        1 ggaggtcagc tccttattta cacaagagaa agtgaagaga gaaactgcca cctgacagaa
       61 actagagaga atgaggcata aaagtttttt agtttactta ttagcactat acgtaattgg
      121 atggaagtag caggtttcaa aaatttgtct tactgtaatg actataattt tttagagatc
      181 gaaaatgaat ctgactagaa aataccatta aactaccaac ttgcttaaaa tttaaagggt
      241 aattcacata taatgctttt atttaatagc ccaatttaca aaacgtctaa aattaatgca
      301 gatcttttca ggacaaaatc agctgtaact gcaccaacta atttttgctc atttgaactg
      361 aattattaat aagagagaaa tataccatat gttcccaaaa gagctggata catttatttc
      421 aaataaaatt gccgcatttg gtggaatata agaggtttaa atgctttcag agaaatgggt
      481 tacttatata ctgatttaat agagtataaa tcagactgca taattaggga cacagctgtt
      541 tcctaaccta aagctgccag cttttgttgg ttaagttcct ttatcacctg catggcttta
      601 atcagcaata atttgttctt cttgtggagc aatacaagtt aatcaataat tttgctgttt
      661 gtac
//
LOCUS       KCOD01000740             696 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 82443pyr ultra-conserved element locus
            uce-6805, sequence.
ACCESSION   KCOD01000740
VERSION     KCOD01000740.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 696)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 696)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..696
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="82443pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>696
                     /note="ultra-conserved element locus uce-6805"
BASE COUNT          241 a          114 c          174 g          167 t
ORIGIN      
        1 tatttcgtta ctgaggggga gccaggcaaa actaaacaga tagcaaaggc tgacaagcaa
       61 gtgagaaaga aagggcaagg gttataaaac taatgcgagt tgtattatat ggtgagtgaa
      121 tcaaatggat tatggaccaa ggactacata attaaacatg taaggtatca aggtaaagta
      181 ccagaataca taaagaggat aatttcttta gtcagcaaat gggcaataac aagaaagaat
      241 ttttgtcttg ggatagtgag cagttgtata aacatatgat gcaaaggctt tttcaaatag
      301 acataacatt gccatatgtt ccatcaaaaa actgcagagg gacttgggaa aatcagaatg
      361 atttaagagg gactatacac atttctgcca ccacttggtt agctgaacac aggcagccaa
      421 aggtaaggag tgctgttaag caagggcatg ttaagagacc agagtgtgcc ccagagattc
      481 ttgcactgag ataatgaaag ctctcaaatg tcaccacaga actgaagctc tccttaaaaa
      541 gtggcagaga gactgtgctt tctctaggtg ctgggagctg acattgcata tgggatagtt
      601 cttcccggtg gacgcaagaa gcccattaaa gtggctggtt atgattggaa caatagctgt
      661 tgcagcagct gagacacact gaggggcaaa ctgatt
//
LOCUS       KCOD01000741             643 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 82555pyr ultra-conserved element locus
            uce-513, sequence.
ACCESSION   KCOD01000741
VERSION     KCOD01000741.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 643)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 643)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="82555pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>643
                     /note="ultra-conserved element locus uce-513"
BASE COUNT          165 a          159 c          134 g          185 t
ORIGIN      
        1 aaaattgcat ccacttttct tcagactgta attgttgtat gcaaggtata ggggctcagc
       61 gtgaaggaat cctctctgca tgggcctgaa acacaatgcc aaatgctttg ggaccatttg
      121 ctagcatcct atacacgtcc tgtaacctgc tgctttttac actgaccatg ctctccggct
      181 gccctgagtg tcgcttcagg atgtgtcgat ccaagggggt tacgcacaaa tcgtcgccgg
      241 cgccgcaagt catcttccca gtagtcgagg cgccagaact cacgaggacg actacaatga
      301 aacagaggag ccacatatgt tagcaattat caaccagcat ggtagcgctg aatttctgca
      361 taaagctctc cttgtttgca ctgcttttgc tttctgcaat cttttactta ggtatgtcct
      421 tgaaaataac aatatcacct tccagtctaa ggaactcctt tccctttttt cttggaaggt
      481 gaaatgagca ctaaatacat cattttgaaa tgaattgctg acagtgtgat cagtttcccc
      541 acactctagt ggcatgtgct ccgatttcag cctcatttca gcctcagcag ggcacctttc
      601 tcagtgactg catttataaa ccagaatagg gaaaaggcta tta
//
LOCUS       KCOD01000742             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 82667pyr ultra-conserved element locus
            uce-6524, sequence.
ACCESSION   KCOD01000742
VERSION     KCOD01000742.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="82667pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-6524"
BASE COUNT          142 a          162 c          178 g          152 t
ORIGIN      
        1 ccgtccatgc ccggtcacaa cccgatgagg ccgccggcct tcctgcagca gggcatgatg
       61 gggccgcacc accgcatgat gtcaccagca cagcccgcca tgcccggcca gcccgcgctc
      121 atgagcaacc ccgtggccgc cgtgggcatg atcccgggca aggaccgagc ccccgccggg
      181 ctgtacagcc acccgggccc tgtggggtcg cccgggatga tgatgtcaat gcagggcatg
      241 atgggacccc aacaaaacat catgattccc ccccagatga ggccccgagg tatggctgct
      301 gatgttggca tgggaggatt tagccaaggc cctggaaacc cagggaacat gatgttttaa
      361 gctgctacca taagactgga tgttgtgatc cttgtcaaga tgagattcca agtcctgagg
      421 gcttttttgg gagcttcagg agtacagttt ggccatgcaa taggtgaaaa gagaccagag
      481 gacgctttgg gaaatctcga atgtatggaa ttacctgatt cattttaaca ggttgttttt
      541 tttttaagat ttatttttta aaaattattt ttgtggactt gggtatcccg tgacggcacc
      601 tgctttgaga atctgtagct gtattttgag aatt
//
LOCUS       KCOD01000743             619 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 82778pyr ultra-conserved element locus
            uce-2943, sequence.
ACCESSION   KCOD01000743
VERSION     KCOD01000743.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 619)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 619)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..619
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="82778pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>619
                     /note="ultra-conserved element locus uce-2943"
BASE COUNT          210 a          102 c          110 g          197 t
ORIGIN      
        1 tctaagatca gtatttcctt caatttgcaa acacaggaca gcataacatt gtttcaggtc
       61 taaagtcagc cctgaatgtg ttaggaggaa tgttacacac atatttttat catatacctc
      121 tggaggccca ctaaaacaga tactgtagct ctatgcaatt tttttagagg tggtgtaggg
      181 gtggaaataa ttaaaatgtt acctttgcca agtaattccc aatgtatcct cactggcact
      241 ggggtataaa tgcctgccgt tttgattcat ggtccagtca caaattctca gctgtcaatt
      301 gaaacctagc agtcagatat ggatcgagca tttttagtat ttaaatgaac acatgcaaac
      361 tagtactgta catggcaaaa gtcttacttt cccaagaagt aactttaact tattttgaga
      421 aataaatgcc tatagacttg ttatgctact ttaatatgat cctctattaa taaagcataa
      481 aagagttagt gtgtagcaca taacaattag ccattattag attacaaact gagctggaat
      541 aaaaggaaat gttaataatc aatagtgaga tactttaaga aaggaaataa ttatgctggt
      601 tttaagcaat gctctatat
//
LOCUS       KCOD01000744             435 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 82888pyr ultra-conserved element locus
            uce-7160, sequence.
ACCESSION   KCOD01000744
VERSION     KCOD01000744.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 435)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 435)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..435
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="82888pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>435
                     /note="ultra-conserved element locus uce-7160"
BASE COUNT          153 a           75 c           84 g          123 t
ORIGIN      
        1 aaatgcagct ttaatgtaac ccaccattga tctgcagtaa gtggaaacaa aatctctcct
       61 taattagtat catccaatca cttttttaca tttctacaga acacacactg tgaactgttt
      121 aatggactat tatttagaag agtggcaaag agcttgcggc atatagtgaa aataaaaact
      181 agcagtgtca atgaaaaatg tgttgcaaaa taatggaaaa aaagatgttt cattaagatg
      241 ggcttcactg gcattttact gtatagatga acactgctcc aattactgcc aacaatgggg
      301 aaagagatag agagatatag attcattact ttcaacaccc ttaactgtct accactgaat
      361 tcgcttatct gttccttttt ctacaggacc tgcgtggagg ggggaaggaa taaacaaaga
      421 actgagtaga gtgaa
//
LOCUS       KCOD01000745             703 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 82993pyr ultra-conserved element locus
            uce-1639, sequence.
ACCESSION   KCOD01000745
VERSION     KCOD01000745.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 703)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 703)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..703
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="82993pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>703
                     /note="ultra-conserved element locus uce-1639"
BASE COUNT          235 a          139 c          118 g          211 t
ORIGIN      
        1 ctccctctca attctttgct ttggaactcc aagatactgt agtttacttt ggaaacacgg
       61 aaggcaaatg agtatagtca tgaggaaaga cttcagttat acaatccatt aaagaaaaca
      121 atagagcttg cagctgagct attaaaaagc gtagagcaat ttttatttca atggctacat
      181 tttatttcct ctgctgagtg actgctaaca aagggttgct gaaaggactg gataaaaagt
      241 agacgtcaga tgcaagatcc atgagttaaa caacattatt agatacaatt tcataaaatc
      301 tagttgcttt tctgctacta gaaatcatgt ccttttgtca acttgtggtc acatcagcac
      361 ttctgttgat ataatttgct ccagctgcag agcatagctg gcctacaaat caagaactag
      421 aatagggaca gtcaggaata actcaatggc ttggataatg tgcaaatcac tacacatctt
      481 gctattagta taatttattt tctctcagaa tatttggaac gtgaaaaatt tatctttagc
      541 aaaacagcca atatgacact ttactgagaa cagaactggc tggctagcat attgtaacac
      601 cctcctcccc ttgcagatca cacacacata cacactctat aaacgtttaa gtgggattat
      661 catatcaaaa cccttcatta tctttcattg aattcagacc aaa
//
LOCUS       KCOD01000746             381 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 83102pyr ultra-conserved element locus
            uce-800, sequence.
ACCESSION   KCOD01000746
VERSION     KCOD01000746.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 381)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 381)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..381
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="83102pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>381
                     /note="ultra-conserved element locus uce-800"
BASE COUNT           99 a           84 c           74 g          124 t
ORIGIN      
        1 tgtggaactg ggagcgctct ctcctccctg ggcctctgca tcacgaagcc acaaggtggt
       61 ggtatggtgt caggcaacaa aaagaggttt tgtttaatga gcttgaactc acaagcctgc
      121 tcatctagtg aactgtgact tttcaaatac caacctatta atgtcaaagg caatactgaa
      181 gggaacagtt ctgtttgatt tagacaatgt gaagtccact atgctctaat atctatcacc
      241 tatggggctc cattcatgcc taatgcttta ttcaagctaa gacctagttt ttatatatca
      301 gattaataca tatctacagc tttgcacctt tctattttga tttttttatt atcagggctc
      361 gccggggcca ttttcattcc c
//
LOCUS       KCOD01000747             670 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 83209pyr ultra-conserved element locus
            uce-7532, sequence.
ACCESSION   KCOD01000747
VERSION     KCOD01000747.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 670)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 670)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..670
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="83209pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>670
                     /note="ultra-conserved element locus uce-7532"
BASE COUNT          210 a          132 c          102 g          226 t
ORIGIN      
        1 ttctctgata actggtccca aaatagcctg atatagaagt aagcaccagg cacaaggctg
       61 tgaaagacaa tattttgctg ccactaacaa gggctgattt ctttgtaagt gtacaatata
      121 gtcaaactga gctttatttc ccaagagatg agatacttca tttatttgtg taacttcctc
      181 agactttata ttcttgtgca tttcaggact tcagtagttg ccttcttgta atatttcagc
      241 ttttaagctg ttttcttgcc tcactgaact cacataagat acatctgaaa gctttagtac
      301 aaatttactt cgaataaagt cttcaattca ttttcatggc accaaaaaga cagctttaat
      361 aactgcaatg acaaataaac tggaaatcat tccaggcctt ttcacttaac tgacaagtag
      421 aacgctctca taatgagccg caggttttac gttttctctt tgaccataat agcttcattt
      481 aagagcgtca gaccctgaca cttcatcatt tatctacatt atttctcatc ttctttcaaa
      541 taaattatgg aatactagac tgagcacata aaaacaaagt gacttgttat ctgtaaacag
      601 caagataaat tgtccagaag ttcctcattt agttcctttt aaatttaagg gcaagttatt
      661 ggatgtacct
//
LOCUS       KCOD01000748             499 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 83315pyr ultra-conserved element locus
            uce-6516, sequence.
ACCESSION   KCOD01000748
VERSION     KCOD01000748.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 499)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 499)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..499
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="83315pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>499
                     /note="ultra-conserved element locus uce-6516"
BASE COUNT          163 a           75 c          106 g          155 t
ORIGIN      
        1 ttaccatggc aataaaatct tgtatgttag cgttcttaca gaattcgaaa aaattggcat
       61 gtaaaggaac ttggattgat ttaggaagaa gaatttggag acattcattc agagcatgga
      121 atgcagcact cacacacaca gctagaggtg atggagaatc aattgtctgg gaaacaacaa
      181 gagattgaag aactaagcag agagatagaa gaaatgaggg cagcctatgg cacagaagga
      241 ttgcaacagg tataattacc ttatgttgct ttctacttgc tatttggtta catgcaaaaa
      301 tgcagagcat caccggaagg agttcacact aatggcagct gttcagaatg cgtgtgtgat
      361 atagaattaa ttacacataa tttctttcaa ttatatacca tgttctatta ctttgaatgg
      421 tatttccatt gtgtgtcctt ttctctgtat tttgtgacta aattgtcttt gcattgattt
      481 cttcaaatta ggaatggaa
//
LOCUS       KCOD01000749             718 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 83423pyr ultra-conserved element locus
            uce-3434, sequence.
ACCESSION   KCOD01000749
VERSION     KCOD01000749.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 718)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="83423pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>718
                     /note="ultra-conserved element locus uce-3434"
BASE COUNT          232 a          131 c          114 g          241 t
ORIGIN      
        1 aaaaacccag ggcttcctgg atattcttct tttacctccc ttgtgtcttt actcctactg
       61 cttagcaaag gtgctgactt tatctctcta agctttagtt taaatgtcca acactgctta
      121 ttaatgaaag tagtaagctt ttgtttatta catgtaataa tggtgaatat gactatttaa
      181 tataaatctg acatttaaat tccacttagt tctgagattc agttgatata aacgagtaac
      241 tctttaccct agagtaaaaa ctccctcagt ctgcatttta aagcattgaa gttttcaaag
      301 taatcagttt ttttcagagg aaccaaattg tgaagacatc tgttatgtta ttaatttcac
      361 ataaatctta agctcctcaa ggcctgaaat gaggcttcat tcaagccgaa ttaatgaaac
      421 atgattgtaa gtcccttgca tggaaatgct gtcatacagt attgagttgc ttataatcac
      481 tgagtaatct tgcaggctgc caagggagag ctactttaaa tccctccata aaacaatatc
      541 tgaaaatatc agaacactaa ctatatcctg gaagattaat agcagatgaa aatttctatg
      601 aaatgaatca ttctttctct gtaaaggata caaacatttc cagtaactgc agattgtata
      661 atatgcagca caatctatga tccagatgcg agttgcattt aagctctgag attcgttc
//
LOCUS       KCOD01000750             540 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 83527pyr ultra-conserved element locus
            uce-441, sequence.
ACCESSION   KCOD01000750
VERSION     KCOD01000750.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 540)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 540)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..540
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="83527pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>540
                     /note="ultra-conserved element locus uce-441"
BASE COUNT          178 a           93 c           98 g          171 t
ORIGIN      
        1 gatattttcc acttgagtgc ttctgtcctt atgttcttca gggaatgtgc attttagaac
       61 ataatacatt tatgtaatat atacgtgcaa actaaggtgt ttgaaatatg tgagctatac
      121 catgatctag aggatatcta ggaggcctgt catacttcta ttacttcagg taaataactg
      181 attgaccttt gtggtgtgct gatacttcac taatcagaac ctgaaatctg tataacaaca
      241 cttcatttac ttgatagaca aaagaacaat tgcacttgaa gtaatgtgat ttctaaatag
      301 acactgcctg tcaaaaataa atgcattaga agtaaaatgt agctcaagga gacaattagc
      361 aaacagaggt gacactgtaa acaggtgcac ccattattcc caaagcttgt ggcaatatat
      421 tcacatcttt tagactgatg gaagatcatg tgacagtttg gtgaattatc tatctgtatc
      481 atctgactga tgaagcctgc tgcagttgca gatcatttaa aaatgcatct cacaaattac
//
LOCUS       KCOD01000751             462 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 83636pyr ultra-conserved element locus
            uce-5756, sequence.
ACCESSION   KCOD01000751
VERSION     KCOD01000751.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 462)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 462)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..462
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="83636pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>462
                     /note="ultra-conserved element locus uce-5756"
BASE COUNT          161 a           86 c           78 g          137 t
ORIGIN      
        1 tttgcaaagt aggtcaggaa tacccaaagg atacacattt gaaggctaca gatagcagaa
       61 cacaccattt acggctttgt atatacacat acgttctata taatataggt agatagatcc
      121 aatgatttaa acacactaca tctataccgt gtgtttcaag aacattcaga tgtttacact
      181 gttagatcac cactcatttt agacccactc tagtgccagc tgccaggtac acaaatcaaa
      241 atatgttacc tttgttcaaa caatactgct gttcattata taatagaaac tgtcatgctt
      301 aatcttccag gaaccaagaa ctggtacatt cttggatcag aggtggcttg aaatggtttg
      361 aggcaaaact gtaagtaaat cttgctgaga aactaagcac actgatgatt tttagcatca
      421 cgtgatatat tagtaaacta aaaatgctgg aatattttca aa
//
LOCUS       KCOD01000752             343 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 83838pyr ultra-conserved element locus
            uce-4670, sequence.
ACCESSION   KCOD01000752
VERSION     KCOD01000752.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 343)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 343)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..343
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="83838pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>343
                     /note="ultra-conserved element locus uce-4670"
BASE COUNT          142 a           66 c           40 g           95 t
ORIGIN      
        1 catttaacaa tatttataac accataaaat acagtgttaa aatatatgaa ctgcaatatg
       61 taccaaaatt ataaaatttg tttctcatca tcagtgatta aaaccaggat cattgctcta
      121 gcttcaatac tcacaaccct ggtgacagat tagaattcaa atcttaatga tcaatttaca
      181 attaacaaga tagaagtgaa acaaattaaa ccaaccatta tatataatga gacccaatgg
      241 actcccattg ttccccttaa ttacaaaacg caaatcacaa atacacagtg ggtagtgtta
      301 agcattaatc tacaacctag aaactcagac agtgacaatc aga
//
LOCUS       KCOD01000753             551 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 83948pyr ultra-conserved element locus
            uce-6212, sequence.
ACCESSION   KCOD01000753
VERSION     KCOD01000753.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 551)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 551)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..551
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="83948pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>551
                     /note="ultra-conserved element locus uce-6212"
BASE COUNT          216 a           88 c           81 g          166 t
ORIGIN      
        1 aacattcact ttcattattg aacattttta gctttattat tataatagaa ttacagtctg
       61 acataaaata aagagctttt gctaaactct gtaaagtaat acatgcttct gccataaaca
      121 acctctatta gatttagatt ttattgccac atcactgcac tgaggtgcaa taaacattca
      181 atgtcatctt tttaaaatta tctcaggagt aaacagaaac tgtcctctat aagagtgtgt
      241 cattattttc aaggaagact tactattatt acatggttta gcaaagcatt gtaaaaaagc
      301 tacatagaga ataccttgtc tttgataaac tgtgcagtca agtttataca gtataatact
      361 attggcatag actaactaag aggtgatata atgcaatcat tgcatagcaa aaagcagact
      421 agttaagtac atctaatgtg caaaatgcag accaaaaggt agctatgaat agctagaaag
      481 ataaaatgcc ctaaatgaac acactagttt aacgccaaaa ataacaagat aaacaagtac
      541 acagaagtta a
//
LOCUS       KCOD01000754             612 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 84060pyr ultra-conserved element locus
            uce-1600, sequence.
ACCESSION   KCOD01000754
VERSION     KCOD01000754.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 612)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 612)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="84060pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>612
                     /note="ultra-conserved element locus uce-1600"
BASE COUNT          204 a          121 c           99 g          188 t
ORIGIN      
        1 ctccctgcat gcttctacca cggtggcaaa cttatttcaa aaattctgat gaaacgcttt
       61 gtaaattttg ttattctgtg atgataataa atcattatag ccttaaacac tcctctagct
      121 tggagcctca gtcacaaatt atcttgtcat tctgaccaaa acattctcca aaaaagcttg
      181 acaagtgcta aaacccagaa catgaaacca tgtgttgttg tgaaagcaag attcagaaat
      241 gtcaattaat tagattaaga ggctactttt agctttactt gtgttgccaa ataaccctta
      301 aaatatgcat agcagtggaa gtctacctca gcaatacagt acttctgtgc aaaataaaga
      361 caatggatct ggctaatagc gggaattatt gtatctgtca ttcagacaag gagaatgatc
      421 tagaagcaaa tgtcttgctt ccctttccac tgtatggatt cacaagcaag ataaattctg
      481 ccacttagaa gtttaggcat aattttttga aatctgattc agattagaaa ataaaagtca
      541 aatcactatt atacatctcc ataagtaaaa tggataacat cactgtctgt gtagctgtct
      601 ccccctgccc at
//
LOCUS       KCOD01000755             670 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 84167pyr ultra-conserved element locus
            uce-449, sequence.
ACCESSION   KCOD01000755
VERSION     KCOD01000755.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 670)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 670)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..670
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="84167pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>670
                     /note="ultra-conserved element locus uce-449"
BASE COUNT          179 a          119 c          133 g          239 t
ORIGIN      
        1 tttttctgtg ggtctagggg agaaaaggtc ctttattctt tagtaacttt tctgatttta
       61 aatatgtgct tgtctggtca tgaggagcaa ggtcattcct actgctcagg gcctaggctt
      121 tgtgctggca ttgatgggag cttctctcct ctctcctttt cctccctccc tctatctctc
      181 cttttctttt tctcctgagg tgcagatggc cacatttgca ggttaactgg aacagctgga
      241 ggcacattat tagcttcctg ctgctaactc atatttgctt agattttttt taacagcaac
      301 ataatttaca agtagtaggc cagtgacaaa gctggcatgt tctaaatccg catctgattt
      361 atataatgct gttgcttatc agtgaatgaa gtcataatta ttgctttgta ccattaaata
      421 gcataaatat ataaactgtt acacaaattg cagcaaatgt ttcctctagg gagctctaga
      481 caaaatttta atgtagtgca tttgtctgtg gtggcagttt ctatggtata taataatgtt
      541 gataaatttt actgtagcaa gtgacatttt ataacattaa tcctagtggt aaaaatctga
      601 tgaatactac ggctgtactg gtgggtacaa gaagaaagag agcttttgac accaagtgaa
      661 ttgattttaa
//
LOCUS       KCOD01000756             461 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 84275pyr ultra-conserved element locus
            uce-7496, sequence.
ACCESSION   KCOD01000756
VERSION     KCOD01000756.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 461)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 461)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..461
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="84275pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>461
                     /note="ultra-conserved element locus uce-7496"
BASE COUNT          138 a           65 c           84 g          174 t
ORIGIN      
        1 cagggtcagg ttctgtattt gatcaaaaca aatcaattat atgccggagt taacttgggg
       61 ttaattagag ttaattacat aattaattat tcttgtacat aggtggagaa ctcaggggat
      121 ccatgggaaa attttcaaaa taatcaaccg ctaacatatt gggaatgtgt ttatttactg
      181 atggttacta tgtccactgt tggctatgga gatgtttatg caaaaacaac ccttggtcgc
      241 cttttcatgg tcttcttcat ccttggggga ttggtccttc tttatattca agacttggtc
      301 ctgtatatct caatgttgtg attaagttaa aattaattat aaaactttaa aatctgttta
      361 gtttttttct gtagataaat attttggcag agcttgtcaa attagtcttt ttctaataca
      421 tttaaatgag taatacatgt gaatacatca agtgccttaa t
//
LOCUS       KCOD01000757             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 84378pyr ultra-conserved element locus
            uce-7605, sequence.
ACCESSION   KCOD01000757
VERSION     KCOD01000757.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="84378pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-7605"
BASE COUNT          229 a          120 c          102 g          189 t
ORIGIN      
        1 gcatcgttgt ctgggcagct gcagtcctgg gttactgact tctctggctc acaccaacag
       61 catcttctcc cctacactga gaggaaagtg tgacttctgc agtgtcaaac atgctctgac
      121 agctgtcagc tcccatgaca cagtgcacgt taaataactc aagtaaaact caagtaaaaa
      181 tccattttaa ctttgctgta tttatatact atataaattt tacatgctat atatttacag
      241 tggggcaagt gctttttatc tttaaaaaaa caaagatcaa acatctctga acaacacagc
      301 ttgtataaac cagacagatt attcagatga actgtattta atacaggttc cccactcatc
      361 tcctgatgca ggaccagtga ataataagtg catcacagtt tgatagcatt taataataaa
      421 aataaaaatc acagtatgaa tttgtctgta aaaaacagac aactgagact taagacaaat
      481 gacagtatat taagaaaatg taatatggaa caatatacaa atagtcttga gagatacatt
      541 cagaactgca tatttgttgt ttcacaatgc caaaaaccag aagattttct tcagatcttg
      601 aatataactc aaatgtgaag taaattagtt tctagtgtca
//
LOCUS       KCOD01000758             603 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 84482pyr ultra-conserved element locus
            uce-1618, sequence.
ACCESSION   KCOD01000758
VERSION     KCOD01000758.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 603)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 603)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="84482pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>603
                     /note="ultra-conserved element locus uce-1618"
BASE COUNT          185 a          109 c          115 g          194 t
ORIGIN      
        1 aatccaacat ttgcggttaa tattactata ttaacaaaaa ataaagggct tgggttcctc
       61 acactgacct gctctcctgc ttaagtggtt ttggagacca attatgatct aaagaaatgt
      121 tttgttctgt ctttcattca cagtggaata tgcctgaatt ttacagatct ccaccaaaaa
      181 aaagctttgt gaatagttgg tgaaagaagc ctaaggaaaa tgtgtaccta atcctattaa
      241 ctgacttaat ttagaattat taaaagcctt gatacacagg atttaacaca atctttctag
      301 cagggtgtga tgtaatctat ttttgttcct cagctagcag atggcttacc tttaagtaat
      361 ttccaatatg ttaggagatc aaaagccatc cttatgccat ggaggcagta atcgtttctc
      421 tctgctgggg gttgcttggt actgtgaata tgcaaaagct gctggcattt ccaagcatag
      481 aaggccgaca tttctacaga ctttgaagtt aataatcctt cagaagttga aaaactgaga
      541 gaccctttta atgttctgta tgccatgtgc tacagtaaat atctgtaagt aatcactgcg
      601 gac
//
LOCUS       KCOD01000759             720 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 84591pyr ultra-conserved element locus
            uce-1878, sequence.
ACCESSION   KCOD01000759
VERSION     KCOD01000759.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 720)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 720)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..720
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="84591pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>720
                     /note="ultra-conserved element locus uce-1878"
BASE COUNT          211 a          168 c          159 g          182 t
ORIGIN      
        1 cactggagct agctttagag gaagagagtc cctgccaagc tggaaagcag tcatgaagtt
       61 acttgagaaa taaggcccta cagtgggact ggttgtgtag ctaatccatt agtcttttca
      121 aaaggacctt gctctacgcc cttatggcta aattgaccca acaacctatc aatgccttta
      181 tttgctgagt ggttgtccat gaaaggtctc cgtgctggat ccaagctgta atcaaagcct
      241 ccatcagtac cagggccctg atgacacaaa tggccaaact ttcaacgagg ctggctggct
      301 tccagccacg ccattttaaa gatacaaaga ggctgtgttg tgctgtggaa ttcattttct
      361 tgtttacttc ctacagaaac aagagcataa tcagcactca gtgcatcgga tcagaccgct
      421 gagttgttga cagaagcttg gagaggcttg ccagctttcc acatgaaaca ctggctttct
      481 tctaatacac cccccaccgt ctgtggccct gccaattgta gcacatcaga gcaaccattg
      541 agataatgac cgtgaagtct catgatacac tttgatgaag tgtaacattt ttttttgtct
      601 gtgccaaaat gatagagaca gctgactaaa aatcacccca tcaaaatcaa ggctgatgaa
      661 cagcaggcaa agacatgtgc ttccacagag aaaagggagg agaatttaca gccaaagact
//
LOCUS       KCOD01000760             707 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 84701pyr ultra-conserved element locus
            uce-2431, sequence.
ACCESSION   KCOD01000760
VERSION     KCOD01000760.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 707)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 707)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="84701pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>707
                     /note="ultra-conserved element locus uce-2431"
BASE COUNT          232 a          129 c          140 g          206 t
ORIGIN      
        1 agacagtgaa atcctttata tcctgggaaa aggcacaatg gaacaaatgg gccctgccct
       61 ttcacagaac atctagctgc catgtaagtg atttaaagaa aggctaagca gaaatgtaca
      121 tcaagtgcca ttattttatc acccacttta atcataggct gctgttcagg atggtttggg
      181 atgttggttg ttacagaaga gatttctgta ccattattag tacctctgaa caaatgcagt
      241 gagcatggga aaaaaagaca ggagagtgag agtgagaagg aaaatgtagc agcggttaaa
      301 gcatagttta ataactccaa tctcagtcac ttttttcgta tgtattgtat gtgcaagtcc
      361 atagtacagc ataatgtgtc ataatttggc ctccaattct gacagcactg cttgacttgg
      421 gcattaaatc attgccccga ggaattcaca ttctggcaat tcctgatggt agggctgtca
      481 tctcctccca cacatgacct atcatttttg acatgattga atcaaaatta gtcagtacat
      541 ttagatgtaa attagagaca tccaagaata ataatgagca caaaaatata gctctgtgta
      601 attgacacgg caacagctta gtacagtctt ccacagtgtc ctcgaaatta ttaatatcat
      661 gataacagaa gtactgtatc aaaaaagtga gaaaactttt ctttttt
//
LOCUS       KCOD01000761             594 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 84811pyr ultra-conserved element locus
            uce-7782, sequence.
ACCESSION   KCOD01000761
VERSION     KCOD01000761.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 594)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 594)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..594
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="84811pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>594
                     /note="ultra-conserved element locus uce-7782"
BASE COUNT          205 a          115 c           94 g          180 t
ORIGIN      
        1 aataataatg ctactttcta aaaagacaag acacaaagca cgctcacaca taatggtaaa
       61 ctgaatttat ttccttttgg aaaacaattc cagtaatctc caggttcaga ccgcagagta
      121 aacattaata acagtaacat acaggttagt tcaactgatt caagaatttg gccatgtgaa
      181 atcattaagg aaagtcttga acactcaaag cttcaaatgg tatccaggaa aaaaattctt
      241 tgacaaacta cataacaact attgcatata tggtaatgct atctgtcata tcgcaaggct
      301 tacaaatata tatacgggcc ttattcaact gtgggttcct gctctgtgag aaagagtctc
      361 ttcatatttt ttgcaagaat cttcagcaat aaaaaatagt cttagattca tccgtttgta
      421 taccaaaaga gagatttcta gactgaagtt taaatgaaag ggaggccaaa cagagctgta
      481 atggaacata gctattacct tctccctcct ccttgcccct cacacagtat tattattatt
      541 tgtatctttc ttgaataggg cccaagtcca cttgtcttta taagaccatt ttag
//
LOCUS       KCOD01000762             847 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 84917pyr ultra-conserved element locus
            uce-1611, sequence.
ACCESSION   KCOD01000762
VERSION     KCOD01000762.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 847)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 847)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..847
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="84917pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>847
                     /note="ultra-conserved element locus uce-1611"
BASE COUNT          290 a          154 c          125 g          278 t
ORIGIN      
        1 atttcagagc aaatactgct accaaaagtg ctgccagagt ctgcattgca caactccaga
       61 cagcatcttt cataaaatga ttatattttt tctagatgta gtgaaagcct tgaaaaaagt
      121 ttacttgatg tctaaccaag caatgctgca tcttcaaatt tgaaggagag ctcagaaagt
      181 tagtttttta ttattcttca tttaagtatt attttttaat tgcagcgtat taaacataaa
      241 atctggtaca atctttaaaa ataaatagga cctaactata aatgggccct gttgtgtttt
      301 tatctttgac aagcaagtaa ttgcttctca aatttatcag tttgtttatg caaaaaccat
      361 ttaccaagcc tagctcaaaa gcatcaattt catcattatc atcttattaa tttagccaag
      421 ctataacaca gctgattatt cctgagtaat atcctctgca gcacatcatg tgtggcaaaa
      481 ccatctgtac agtacctatt taataaataa accctcggct aaatgtctct gtttattgag
      541 aactaatgtt tatagaaaat ataatggaac tcaataaata actcagcttc atcaacctgc
      601 atatgaatca gtatgaagaa cgctgacatc atcacctttc aagtaccaga gaaagcaaaa
      661 ttacccaaaa gagctataga gtcaatatta aggcattaaa acggcaatga aggcatatta
      721 atgcttaaaa cttcattgtt ggcagtagaa ttgccaccac ggacatattt tataactcta
      781 agaatactta ggctttatga ctgtttcttt gttgagtgcc ttgcacttaa tgtagttttc
      841 cacttta
//
LOCUS       KCOD01000763             786 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 85026pyr ultra-conserved element locus
            uce-7864, sequence.
ACCESSION   KCOD01000763
VERSION     KCOD01000763.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 786)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 786)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..786
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="85026pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>786
                     /note="ultra-conserved element locus uce-7864"
BASE COUNT          259 a          131 c          187 g          209 t
ORIGIN      
        1 gggattttaa aatcccatgc cctttgagaa actttcaaaa tgaatgaaat gttttattaa
       61 ttctaacagc ttaatgtaca gaactaatag acgtgtagtc cattttgtct tctcccataa
      121 tgcattaatt tctttataca gacagattgc atggctatgt ttgtatgaca ccactcagat
      181 caattctaag acctctgaac taaagaaaat catctttcta aatggaatac taattttagc
      241 taagctgctt ttgaagacta tgctcttttc caaagctcca tacaaaaggt agggagaaga
      301 gggagagtgt agctgatgaa atgcaaatga ggcttttctc agacagctgg ctgcttgggg
      361 atgacatgtg tgatgaatgg ctcttaaaac atgagcaggc atcaagctcc aattcagtgt
      421 cagactggca aaaacagcag cattactgga tgcttccttt aattaatgca acacttctgc
      481 attagtccgg acactgccga taaatgggaa agaactgata tcagtggtaa tatcagaaat
      541 ctttcaacct tgaagctggg atgcattagc caaaagctgc ggtatcgtaa aaggtttaat
      601 tgtatttgta atgtaccagt gcaccatgac aaaaatggga gatagtgtag gcaggacaga
      661 gtaagccagt gataaatgag tgtgagtgag cgattatgaa gcagggagga gtgtggaaac
      721 agacaataga cagcagaggg gaagggggga atgggggcct ccgatgtgaa aagcaggtaa
      781 caagga
//
LOCUS       KCOD01000764             593 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 85138pyr ultra-conserved element locus
            uce-2416, sequence.
ACCESSION   KCOD01000764
VERSION     KCOD01000764.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 593)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="85138pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>593
                     /note="ultra-conserved element locus uce-2416"
BASE COUNT          187 a           96 c          125 g          185 t
ORIGIN      
        1 cagcagaaat ctgttcctct aatttctaag aatggtgcag taagggaaaa gctcttccgg
       61 gggagttttt ggagccttct cccacaccag gaattcactg agggaataag gctgagcaat
      121 gcacaaacct gaaagtccca gacattcagg ttcatctgtt tggtcctgtt atgacagaaa
      181 tcattacaag tttgatagat ttatttataa agacttgctt caatatttaa agtacatcta
      241 ttccaacatt cctcatttca agctcggctg tggatcaaga tgaaagaaaa attaaattgt
      301 atattgaaga gctgttaatt gaactgcact gcatttagca agggagcatc agcttcaggc
      361 agtcaatact acagagaatt tttaatgtac tgtatcacta gactggcagt ttgtattgga
      421 gaatgcaaac agactgcttc gactgatgat aaagccctgg aaacttttaa gttgttgagg
      481 ggagaaaatg ttattttgct tagatatatt gtgacaaagt tgttgatgga agcaggaaca
      541 acaggtgaat attatttgaa tatcaaattc tgattgcttt cattctttta gtg
//
LOCUS       KCOD01000765             705 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 85249pyr ultra-conserved element locus
            uce-2312, sequence.
ACCESSION   KCOD01000765
VERSION     KCOD01000765.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 705)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 705)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..705
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="85249pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>705
                     /note="ultra-conserved element locus uce-2312"
BASE COUNT          225 a          135 c          126 g          219 t
ORIGIN      
        1 tcctagttag tacaggtcac tgccatttct ataacaaagt aataaaggca cagctagtgc
       61 aagcagactt aaacccgttc agactactgg gctgaaaaaa tactttggtt ggttcttcag
      121 gagagagttt tctctaaaca aatattggtc tcagttaaca gttctgatca tcttcacagc
      181 tgcagtctaa tagctacatg acaaagactt cacaagaacc aaactatgta gcaatgaatt
      241 aacattcatg ctttagggga tttactgcat tctacatatt ggcagaaaat tatactgtta
      301 aaatgctagg tagattgaac ctacatttta aactggttct taagtgttcg atttttttaa
      361 caaattggtt acttaattct accaagatac aaaacataag gctgtaagta actaatagtt
      421 gtgtttaggc tattacagtg caggtaatcc tagacacact gcttcactgc tgcttgcatt
      481 ctgctgggtt ttgatccttc tgttgggaaa taccagttta cagaaatccg tatttaaaag
      541 aactatcaat actgctaagc atgcttttcc attgcactaa ttgtctaggc aacactgctg
      601 cagcaacact tcattttggc tttgtcagca catcgggata caatccagaa caaaaatctg
      661 ttcaggacta agtgtggtga aatactctaa aagacactgt aactg
//
LOCUS       KCOD01000766             747 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 85360pyr ultra-conserved element locus
            uce-6706, sequence.
ACCESSION   KCOD01000766
VERSION     KCOD01000766.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 747)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 747)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..747
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="85360pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>747
                     /note="ultra-conserved element locus uce-6706"
BASE COUNT          227 a          127 c          148 g          245 t
ORIGIN      
        1 atatggaagt aaaaccaact caaattaaaa tgtcaagaat gtaaaaactt aacatgggat
       61 caacaagccg tctggtgacc atttcagatg gaacctgtta cataattcca ttcttgagct
      121 tttcctaaag cagttgggag cataagtgta ttttgattaa gtaggatggg acttttgcta
      181 accagttctt tgccactgca aggtgctttc atagcctgca gcatctgcct tccaaacttt
      241 gcttgcctgt agattgttct gcagtttgtt tagcaacagc tgtttcgaat tctaatgtat
      301 gaaaaattga tgattaactt cttacctcct ttaggcacat agagatgaaa tccagcgtaa
      361 atttgaagcc cttcgtaata gctgcacagt gagtattaaa tacagatcat tgaattattt
      421 tgaaattaag gataatgaaa caaacaattt cctcatttaa tccttgatga cactggttcc
      481 taatgtggac ttttggcttc aaggtgctag taggagctgg atgcattgga tttcttttag
      541 gtttcagcaa ttttgaggtt ttagtctgat catgaaattg tcattattct tctttttgga
      601 gaagaaagta aattaaaata tctcattgca gtgcagctaa taagaatggt gtagcagctg
      661 aaaatgactg taggtgaaga tcttttctgc tcacaagaag aaaagatcta cctgtccaaa
      721 tcctgagctg cattgtagat ctaggcc
//
LOCUS       KCOD01000767             515 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 85467pyr ultra-conserved element locus
            uce-4721, sequence.
ACCESSION   KCOD01000767
VERSION     KCOD01000767.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 515)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 515)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..515
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="85467pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>515
                     /note="ultra-conserved element locus uce-4721"
BASE COUNT          139 a          121 c          118 g          137 t
ORIGIN      
        1 ttccccgcag aggagtatgt cacctgtcac acgtgccgct cccccgacac catcctgcag
       61 aaggacacca ggttatactt cctgcagtgc gagacctgcc actcccgctg ctctgtggcc
      121 agcatcaaaa caggcttcca ggctgtcaca ggcaagagag cacagctccg tgccaaagct
      181 aactaggttt gctaatcaac actggagaaa gtgttctggg gatttacaac cggagtggat
      241 tttaaagcaa ggttgtaaaa acgacattgg tctgtgaaat ccttgcaaga tgcagatcct
      301 caagctgttc acatacattt gctcattgaa tatattttac caactgtaag gagcgtgatg
      361 ggaaaggagg tgctttttaa tccgttcaga cttctgtaaa acacgagata aattaaagat
      421 actataacag tgagtgtctt tggatttttc cttcagtttc ctcaatggtt ggtgtgttgt
      481 tctgcagatc atgtcactgt gtccaagacc cagaa
//
LOCUS       KCOD01000768             585 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 85572pyr ultra-conserved element locus
            uce-454, sequence.
ACCESSION   KCOD01000768
VERSION     KCOD01000768.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 585)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 585)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..585
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="85572pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>585
                     /note="ultra-conserved element locus uce-454"
BASE COUNT          204 a           98 c          106 g          177 t
ORIGIN      
        1 tgccaaatta aagcaggaat tcataaaagg gtccaaaata aggataaaag aacaaaaaga
       61 gaatgaatgc ttcttagctt ggtatttctt taatttcacg taaattttac taagtaaata
      121 tgccttaaaa gtgaataaaa ttttatttca ctttaacaag agagtataaa agttaaaaag
      181 gtcactgtag taatagacta atctcaatta ccagggcagc cggtgaaacc cacaactccc
      241 acctaatctc attcggtgca cacgcagtgc accgtttgat ttccaacacg gctaaatgaa
      301 attataaagc agtgttaaat ttattaatca tttaattagc taaatgttcc tgcaactact
      361 cgtgagatga atggcatgtc attttctaat gcaatttgcc tctcagccag gcagggtcag
      421 gagggaagct actggcatct taaatgatct tttttatatt gcaccttcta ttaagggaca
      481 gtgtgatatc gctgattata tttgagtctt gtacacaagg ccagggagtg ttcttgttat
      541 aataacaggt tatatttaaa ccaaaataaa agtggtaaga tccga
//
LOCUS       KCOD01000769             595 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 85681pyr ultra-conserved element locus
            uce-4527, sequence.
ACCESSION   KCOD01000769
VERSION     KCOD01000769.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 595)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 595)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..595
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="85681pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>595
                     /note="ultra-conserved element locus uce-4527"
BASE COUNT          122 a          169 c          120 g          184 t
ORIGIN      
        1 ttccctgaaa agtgctgggc ctctcccctt tctgcctcct aagtggggat gggcacatga
       61 tagctctgca aaaaatctct cctttcctct gagtgcaaca aagttacaaa aacagtacct
      121 taatcctgtt tctctctttc ttctcccttc actccatgcc cctgttgttc attttttatt
      181 catccaccct tttctgtctc catgggacac tgttttgtgc gctgtgggct cctggcaccg
      241 cacacagctc accctttctt tctccaatca ggatggcggc ctagtggaag agcccactac
      301 ttcaccattt ttgccttcac caagcctgaa gctccccctt tcaaacagtg cactccctaa
      361 tcagaccctg ggcgggattg cctcagggct gggcatgcaa aacttgaatt cttctagaca
      421 ggtaaggctg ttgggggaga tcccaatttc agctctcttg gagtagctac agctttgttc
      481 acgtgaattt caccttacag acattgtaat tagcctgcat ccatcaagaa gagatgtgga
      541 tttatagccc tgaaccctgg tgtggctctg ccttcatttt tttttgaggc gttgc
//
LOCUS       KCOD01000770             497 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 85790pyr ultra-conserved element locus
            uce-6718, sequence.
ACCESSION   KCOD01000770
VERSION     KCOD01000770.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 497)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 497)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..497
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="85790pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>497
                     /note="ultra-conserved element locus uce-6718"
BASE COUNT          161 a           95 c          103 g          138 t
ORIGIN      
        1 agcttttaaa aatattgcac ctgcagatca gcaggagtgg gaggaaagat cattcctttc
       61 tccacggcgc agatttcgag taattcaggg gaggcaaata cgatgcgatc aataaagcag
      121 ctccgtgcct tccacgctca cggcctcctc atgaatctta accaagagaa ataataataa
      181 gtgacagaga aggtttctgg tactttaaat aagcaagtga gcctcctaaa gctacgagca
      241 acattctctg gatatcaaaa ataataactg gttgtgcagc agtgcagcat ggaaacacaa
      301 gggtataaga tatactgtac tttaagctct gtttgatgaa tctgagcaca gttcctgagg
      361 gatagattac tttaaaccat gctcttttac tttctaatcc tgacttgatt tgatttgtac
      421 tttaatacag ctgcctggca attcaacagc aaatagagac tatttatgta atcatattgt
      481 aagtagtggg acaagaa
//
LOCUS       KCOD01000771             376 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 85896pyr ultra-conserved element locus
            uce-2794, sequence.
ACCESSION   KCOD01000771
VERSION     KCOD01000771.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 376)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 376)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..376
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="85896pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>376
                     /note="ultra-conserved element locus uce-2794"
BASE COUNT          127 a           61 c           50 g          138 t
ORIGIN      
        1 aatagttttg aaagaggaat tctaccagtt atattacttg tttaaaatat aacaaagaca
       61 cctggaatta taacatcctt tgcacagtgg atgtcatatt acgttttttg gtgattacgt
      121 caatttagta tttcacgtat tattaataat tcctcattac ataaaattat tactaaactg
      181 gcaattaagt ggatgtgaag gatccatatg ctgaagtgtt tgtaacattt caattatgaa
      241 cttcacatca gatgtcttcc agtgtacatc aataacatta atgaacaatt tttgccaaaa
      301 ccacccaaat gcgttccatt atcttattat attttctcag agccttgtac atcttcataa
      361 atatttagat attagc
//
LOCUS       KCOD01000772             619 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 86005pyr ultra-conserved element locus
            uce-6970, sequence.
ACCESSION   KCOD01000772
VERSION     KCOD01000772.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 619)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 619)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..619
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="86005pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>619
                     /note="ultra-conserved element locus uce-6970"
BASE COUNT          184 a          122 c          139 g          174 t
ORIGIN      
        1 agcagctgca ggtggtatta aatcccattg gtctcagtgg attgcagtct aagttgttac
       61 tgtaggccag accattgaag cctggctctt agggtgaggc accattcgtc gtgttcgttt
      121 tctctaggtt atttagaaga gcttcatctt tttcagcttg cagcactcct ccagtcaaca
      181 tgaaagtgca gcctgtgaac aggacagcgc tactggtaac ctggaaccaa ccagaaacca
      241 tataccaccc tccaatcatg aactacatga tctcatatag ctggactaaa aatgaagatg
      301 aaaaggagaa gactttcacc aaggatagtg acaaggagct ggtaaaagca cagcatcaac
      361 cccagacata tgtatcaagc tatccttttt tcttggtaga aggaggtaga gaaagaaagt
      421 ttaccttata ggcccacaat gaattgctat ttaaatgttc agcattagta aacagtggaa
      481 atttatagtt tatgtgagta cataaaggac tgaatctgca gacacttttt catgtagtgt
      541 tgctgagaag cagctggctt gggaaatggt gaggctcttt tggcttgtgt tcaacttgca
      601 gattttcaca ttagacatc
//
LOCUS       KCOD01000773             840 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 86113pyr ultra-conserved element locus
            uce-3139, sequence.
ACCESSION   KCOD01000773
VERSION     KCOD01000773.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 840)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 840)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..840
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="86113pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>840
                     /note="ultra-conserved element locus uce-3139"
BASE COUNT          218 a          163 c          195 g          264 t
ORIGIN      
        1 cgatgctaac aattttcttt tccttgtgaa agccaacttt ccctgtctcc ctggtccttt
       61 agttctcacc ctcaatggaa acaattcttt tgttgagttt gaactgtgtg tttgtgttga
      121 ttgttgcaat gcaacaatgc tggtaacagt atttctatct ttccctttag gtctggatag
      181 atgcagggac acaaatcttc ttctcatatg caatctgctt aggagcaatg acttccctgg
      241 ggagctacaa caagtacaaa tacaactgct ataggcaagt ttccatccaa gggggtttag
      301 tgttttagct aaatgatgta aataaagtag ggacaatggg ttaatttttt tttaattaac
      361 ttgctccatg acatatgtgt gacttaggga ctgtttgctg ctgggatgcc tgaacagtgg
      421 taccagtttt gtgtctggct tcgcaatttt ttccgtcctg ggcttcatgg cacaagagca
      481 aggggtgaac attgctgatg tggcagagtc aggtacgatg gtgttggtgg cagtggtggt
      541 gggcactgcc gcccagcgtg tgagcaaagt tctgcagacc caatcagcta acatctaagt
      601 gataaaacag aacaagattt cccataattg ccagaaaata agcacgttgt ctagagcagt
      661 gagggttagc cggggttgta cgtcttgatt aacagggcgg caaacacatt tcctagagtg
      721 tgctaatcca tttgagttga gatgagagct aagacaccat tatctaggga ccagaatgtc
      781 attgattcga gaatttattc catccttctt ttcagacctt tattttcatt caaatgcaaa
//
LOCUS       KCOD01000774             514 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 86218pyr ultra-conserved element locus
            uce-344, sequence.
ACCESSION   KCOD01000774
VERSION     KCOD01000774.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 514)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 514)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="86218pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>514
                     /note="ultra-conserved element locus uce-344"
BASE COUNT          162 a           83 c           89 g          180 t
ORIGIN      
        1 tgttgctaac cactctttaa ataaaaatac aacatgattc taatatgcca aggagctcca
       61 cggataacca tataatttcc aaatgatgct gattttgttt atatgcaaca taatctttta
      121 cagttcttag tctttatttg aagcattgca aagtggattt ttatgaaagg tattataaag
      181 gactccttgt tttttcataa cagatttgaa cgttaactga tcagagttca gataaatagt
      241 ctttactctc cattaaaata ttaaaaagcc tttggtagga aagtggcata aagatccttc
      301 attcttgttt aatgaacact tgttggcaag tataacactt taatagcttt gcggaatgaa
      361 ttttgtgaga gcatcctcca tttcattgtc agacacttgt ccaggtgctg ggaatttatt
      421 gggggaagca tatttttact cattagttct gtatttgatt acagaacagt aaaatatgaa
      481 ccactaagtc cccgaggcat agctgtgtac attg
//
LOCUS       KCOD01000775             534 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 86328pyr ultra-conserved element locus
            uce-6871, sequence.
ACCESSION   KCOD01000775
VERSION     KCOD01000775.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 534)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 534)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..534
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="86328pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>534
                     /note="ultra-conserved element locus uce-6871"
BASE COUNT          137 a          133 c          134 g          130 t
ORIGIN      
        1 ccttctaggt tgtttctgct ttcctcctcc tcctttctct gctccccaac ccatgtgtaa
       61 aagtagcagg ggggccttta ttaaaggcaa agccccacgg cagcagcttc ccagccaaac
      121 tgctcttgta ttactttttg atgagttttc aatttaggcc tttgcagaca gggggaagaa
      181 ggcgacttga gagacagagg ggggaaaaaa atgcaacaga tggggccgat tgtgctctct
      241 aggcaaatta aggaagacat ctgtagctcc caaatactgg tggtctaaag caattagtcc
      301 cctgtgaaaa ggggcctctc tgagcctcct ccagccaatc cgcgccccgg cagcactcac
      361 gttacaatgg ccttgaccac aattcactga gccaaaaaaa agaaagatta atccaggagg
      421 agctgtgcgg ccaggctgga gttgctaggc ttaaaaggga aggcgtttct gcctgagttt
      481 ggagcagaaa agcagggctt tttatccttc tttctgatgg tcacccacag cgta
//
LOCUS       KCOD01000776             739 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 86438pyr ultra-conserved element locus
            uce-3520, sequence.
ACCESSION   KCOD01000776
VERSION     KCOD01000776.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 739)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 739)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..739
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="86438pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>739
                     /note="ultra-conserved element locus uce-3520"
BASE COUNT          244 a          122 c          118 g          255 t
ORIGIN      
        1 tatattctcc tgtgattatg tagttgtttt atttcacaat ccctttctcc tttactctga
       61 ctttaaaata tgtgcatata ttaagaatta aagttaaata attaacaact ttaatttctt
      121 tagcagtgtg tggtattttc catggtgctt tccatgcaaa ctagatacat gtagtatttt
      181 attgtcaaaa taatgcttca agtagtaaaa tggcaaggga atactgactg agctattaat
      241 aaaacacacc agcttttagc tggcaaagca gccttctttc catcaaatat gtctcagcct
      301 ttaataaaga aactcaagtg gtgtaggtga aaaattactt ttctcacccg gtcatctgtc
      361 tgtcatgtat tattcaggtc accaatgttt gtcctgaact gtatcattct gtagttgtgt
      421 caggtatgaa atatgttcag tgtaattcca tcagacttca cgaagttgat tagaacagat
      481 cacctttcgg catgggcaca agttatctca gcagattgaa tgaaaaagac ttatttatct
      541 ttgcctgata ataaagaaag agatgagcaa atttatccat taacttgaaa agagtctcat
      601 attttgtgtg aaaacaaact gaaggcagta attctattga aaatacttta atacatgaat
      661 gttcctttga aaacacgttt atgtttgaaa ccagaaaata taaaccttga gccacatgca
      721 ttataacaag cttttaaat
//
LOCUS       KCOD01000777             816 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 86551pyr ultra-conserved element locus
            uce-6872, sequence.
ACCESSION   KCOD01000777
VERSION     KCOD01000777.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 816)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 816)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..816
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="86551pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>816
                     /note="ultra-conserved element locus uce-6872"
BASE COUNT          301 a          154 c          135 g          226 t
ORIGIN      
        1 tctttgaagg gcaaatttag tattgtaatc accacacata aaccagaact taactcatgt
       61 tctttcccca aaagaaggac ttcagatgtc agaatcacta aagggatggc tctgaaatca
      121 agacttcaca catacacaaa aggcactgac ataatatcag attacataaa aatacacatc
      181 cttttaatct cttgtacata atgtgcttac ttttaaaata caaaatctgc cccagatggc
      241 taataatgcc catttgaaaa aacacaacac cacaatatta aagggctaaa atatgctgtg
      301 aacagattga gaggcagttc atcctagagg agagtaaaaa agtgcagatg ggtgtcaaaa
      361 atagccaagt gtcagatctg ttcaagtatc tccattctgg cacatgctcc cagtcacagc
      421 tgttagtgta ttctctgtat ccaagtgcaa ggttttctaa cactcagagc tgacattaaa
      481 acacacttct tgcttgctac tgctttaaga aaatgctgca aataaaagat ttatttaatg
      541 gtaaagctta acattgataa gggtatacat acttgaatgt agcacatgcc attttgatta
      601 aagatgcatg aaattttaac cagcaggtag attaagtaat ttaaatgcca aaggcttaat
      661 aggttttcaa aaacatccac tctaggcatt ccaacatttg ccaatagccc caaataatgc
      721 aaaaactgat aagattgtgt cattttagta tgagaagatg agtttcatac aaacataagg
      781 gaaacatcag tggattcaaa ttatgcacaa cgcaca
//
LOCUS       KCOD01000778             694 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 86663pyr ultra-conserved element locus
            uce-241, sequence.
ACCESSION   KCOD01000778
VERSION     KCOD01000778.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 694)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 694)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..694
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="86663pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>694
                     /note="ultra-conserved element locus uce-241"
BASE COUNT          211 a          113 c           94 g          276 t
ORIGIN      
        1 aaaattccaa gcccacaaac ttaaaatacg catgcagaaa ctcatactca attctaatta
       61 acaaagctta cctttctctt gaccatagag gtcatcatgt aaactattta aattgatagt
      121 aatattatgc agcatgaaat taattttaca ttgtatacag tttttattgt gactttatct
      181 tgtttcaaaa gtgcttactt tctgattttg tggatattac tgactggatt acttttattt
      241 tggtttttac acaacagtta tattagaaat tttctgtttt attcttacct tcttagtaaa
      301 aatcctttta tcacacaatg ggtaatttat atccattacc agccctttca atccttttca
      361 gtggtgctgt cagtgccttt ggcacagtaa tgattaatgt gatctaataa tagtgtgcca
      421 ttatattacc ttagtaaaac atgtaccaac atcctattca gatctaccaa attcatagct
      481 tcctataata tttttgttga aagacaggat tactattttt caaagcagaa tttttttttt
      541 ttgcctttaa catatttaat gaaattcaca attctttgcc atggtaatct tcgtgcatgc
      601 atttgggctt gatgggtgaa ttttatatca ttctgcatta ttatgatttg ttaggcaaat
      661 tgtttgacac gtaaaggaag atatgcatta catt
//
LOCUS       KCOD01000779             242 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 86768pyr ultra-conserved element locus
            uce-3514, sequence.
ACCESSION   KCOD01000779
VERSION     KCOD01000779.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 242)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 242)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..242
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="86768pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>242
                     /note="ultra-conserved element locus uce-3514"
BASE COUNT           68 a           41 c           48 g           85 t
ORIGIN      
        1 cttggccatg attaatctga taaataataa atatatcaat ctagtctttt agacaaggac
       61 aaattcttac cagcggggag gcacgaggcc tcttttacag ctgcctgtag tgctggaatt
      121 aattatttaa tgcttaattc ttcaggaaat gagaaagttt tgattaatgt tgtccagtgt
      181 catttcttgc ttgtttgata tgtgtcagat aatttttcct cggcagtcgc tctgaaaaag
      241 cc
//
LOCUS       KCOD01000780             542 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 86878pyr ultra-conserved element locus
            uce-6070, sequence.
ACCESSION   KCOD01000780
VERSION     KCOD01000780.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 542)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 542)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..542
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="86878pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>542
                     /note="ultra-conserved element locus uce-6070"
BASE COUNT          181 a          100 c          105 g          156 t
ORIGIN      
        1 ttttacccag gcacaattcc aacaacagtt gcttttgact tacagcattg taacaaagaa
       61 taagaacttt ttatttatta aaatggacaa ttgcatcgac tttaataacc cttgcctcaa
      121 agttcacttg aaagaaaact aataagactt tttattgaga gaaaaaaaaa aagtttagct
      181 atggtcagcc agggtgggaa attccattgt ggctgcaagc ccatggcagg tagagtggaa
      241 tttaatgaag gaaactgctg tgtttttgtg tctttctgta tgtttttcct ttaaaaccaa
      301 gagctgggca ggcttcccat ttgacctgat gtgacccaag caaattgctt cttatataaa
      361 aacaactgca gacttggaga atgtgaaaat gcactgtatc ctttttccaa ctcagggaaa
      421 atgaaagcct gagaaacagg acagccctgt caatactcgt tgagcaaaac tatcactcaa
      481 gccctataaa gagagattag aacaggcttc cttatgccag agggattcat tataagttag
      541 at
//
LOCUS       KCOD01000781             764 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 86991pyr ultra-conserved element locus
            uce-6520, sequence.
ACCESSION   KCOD01000781
VERSION     KCOD01000781.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 764)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 764)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..764
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="86991pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>764
                     /note="ultra-conserved element locus uce-6520"
BASE COUNT          231 a          149 c          143 g          241 t
ORIGIN      
        1 ttcttttact cttttaaatt cagacataat ttaggatgga aaattacatt ttagaattac
       61 acttgcagca tgtagtatta gtatgacttt ttcatgtcat gacagtgatg tttctacaat
      121 ctatacatat tgatttaggc tgataataaa caatttgatt aggctctatc tataggctgt
      181 catttcaatc actgtcactg ttccaataga gtggaaggca gatagcagac acatatggca
      241 agatttctca aaataaaaac tctggcctga ttagagccct aggttcagtg aattggacaa
      301 gacagctcag ctgccaggtt attaactccc tcagaaaata ctctgccttt tccccggggc
      361 cagcctgaat attctgatct ggatcgataa gcaatctccg gtgtgtacaa aatgccagct
      421 agaatcattt gtctcagtgc agtctcctta caaaggataa aacacctgca gtatatggcc
      481 ttctctccct ccttttttaa ctaatgaccc acaaagaagg aagaagtaac tgaatctgtt
      541 ccatcatcag gaaggctctc tcaggtttgt tttaatgatc acaatggcta cctttcaatc
      601 ttacaaaaat tatatcagtc atggtttccc tgtggcatgt ttatgtaagt aatgtgaacc
      661 acaatgtaat gacaagtgta cagatgtcat tgtaagaggg cccttggcaa gaagatatct
      721 cagaatgtca gaattttaat gaaccgtgga tagggttctc tttg
//
LOCUS       KCOD01000782             587 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 87099pyr ultra-conserved element locus
            uce-4661, sequence.
ACCESSION   KCOD01000782
VERSION     KCOD01000782.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 587)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 587)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..587
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="87099pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>587
                     /note="ultra-conserved element locus uce-4661"
BASE COUNT          195 a          108 c          105 g          179 t
ORIGIN      
        1 tatcacccaa aaaaaagcag cgaaatggag gcatgcgaaa ttcacccaac tcctcaccca
       61 aactgatgag gtaagactgt aagaaactca tatcttcatc tcctcctctc ctaaaaataa
      121 ggggaaaaaa gaagattgtt agatggtttc tgaaaggctg aagtatttat tctgtcagct
      181 tgtcagcagt taatgataga gctgaaaaaa aattctgtca tgaaaaacag tttgaaaagc
      241 tgtttgaaaa atacataggc tttaaagtct tagctgtcac cctgtcctgt ccatgtgtag
      301 ttcttaaaca gcagtggcac taatgatagc actaaccaat caggggaact catgtggtta
      361 gtttgcctca ggcaattctc tttttgttgg attccctctg agtactgttt tctgtactta
      421 aggccatatg tgagatgtat catcacaatc aaaaatgaac ctgaatatta ccttcctttt
      481 atcctgtcga ttgaaatcaa atttctgtga attgatttag actgatgaaa aagtctaata
      541 atatatttac ttgccaaagc aaagttcaaa actaatgcag ttttagt
//
LOCUS       KCOD01000783             551 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 87207pyr ultra-conserved element locus
            uce-1018, sequence.
ACCESSION   KCOD01000783
VERSION     KCOD01000783.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 551)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 551)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..551
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="87207pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>551
                     /note="ultra-conserved element locus uce-1018"
BASE COUNT          188 a           68 c          114 g          181 t
ORIGIN      
        1 taaatgatca agaggagtaa aaaggacatt ccacatacat aaaatatgta attaaaatga
       61 tgaattattg taagatagaa tattagcctt ttgacatttt aatctgagca ggagagagtg
      121 agagagtgca tttggagccg ctcaattaaa tttagaattt tcccctccat tgttatgaat
      181 aaatagaaag attctgtagc agtctgcgga attattaatt gcaagtactg tagaaggtgc
      241 atgcaccgta tcatgaaatg gagtatcatt gttagtgact atatttcttg gtaattaagg
      301 cccagactaa tgatgcaagt tttcttcagc atgattttca tctgattatg aggctgcttc
      361 attaagagca ctcagactaa cgagctgtag ctgtaataaa gtaattttct gtcttgtgct
      421 ctgattgata aagagtttct atagctaaaa ggaattgaaa atataattat aattagaaat
      481 ggttgaataa agttattaca ggattgctga agggtagtgc aattgacacc ataatgtttt
      541 ttggaagtgt g
//
LOCUS       KCOD01000784             684 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 87318pyr ultra-conserved element locus
            uce-7357, sequence.
ACCESSION   KCOD01000784
VERSION     KCOD01000784.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 684)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 684)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..684
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="87318pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>684
                     /note="ultra-conserved element locus uce-7357"
BASE COUNT          221 a          112 c          116 g          235 t
ORIGIN      
        1 aatcaaccat gtgcagctgt gcagtgagtc ttccactcca agttcttcag cctttttaat
       61 ttttatcggt cttgttttgt tcatgacata tttatgacca gtgggattga gatgaaatgt
      121 acatacatga aaaaaatcag tgcaatacta ttttttttta ttcttttaat gatatttcat
      181 tccaacaagc tctttctatc tagacgctta attagatatt taaatgattg gagcaatgct
      241 gtttctttaa ctcctaactg caacaaacac atacgaaaca cactgttggc ggcatttaat
      301 caacagcagt caatttatca ttttcacagt tttagtgagt ggttatgaat cactaaaatc
      361 acaggtattg tagatgcagc gttgtggcac tatcattaac aaatatacag tgcacagagg
      421 gatgacttgg taattgagtg ggactaataa gaatacatca tttagctgta tgtgacaaac
      481 tgtgcctcaa aacacaacca tggaaaattc acgttttgct taataaataa attacacagc
      541 caatgtatta tacataattt gtgtcctcat ggatttgaat gatatataat gcatggtcca
      601 agtcatttat ttattaagac taactatata tattgtaggt ggggaatttt aaactctaga
      661 gtaagacctg cataggtaac tgtt
//
LOCUS       KCOD01000785             349 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 87423pyr ultra-conserved element locus
            uce-7904, sequence.
ACCESSION   KCOD01000785
VERSION     KCOD01000785.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 349)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 349)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..349
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="87423pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>349
                     /note="ultra-conserved element locus uce-7904"
BASE COUNT          115 a           61 c           59 g          114 t
ORIGIN      
        1 gtccatcagc gcatgacgca cctttacttt cacacgtctg ctgtttacta aataacattt
       61 cagcacagtt ttcatcaaag tgtttgaaac ttggaataag tgcacttaat taaaggaagg
      121 ctgtgaaaat gtgcactaat ctgatatgac taatagcaaa gtgcatgaaa ttgctaatta
      181 gaatttcatt aaaggtgctg ctttatcaga ctgcgaatat cacaaccttt aaaattcttt
      241 caggaaagct taattccttt tcaaacggaa atattcttta aagacatttg atttgttctg
      301 aaggaatttg tagcttaggc tgaaacataa aatgttgcca gtattccac
//
LOCUS       KCOD01000786             689 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 87532pyr ultra-conserved element locus
            uce-6992, sequence.
ACCESSION   KCOD01000786
VERSION     KCOD01000786.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 689)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 689)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..689
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="87532pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>689
                     /note="ultra-conserved element locus uce-6992"
BASE COUNT          216 a          139 c          134 g          200 t
ORIGIN      
        1 aatttacaca ttaataaatc aggtcaaagt taggttttgt cctgtttttt cagcataaag
       61 gcccagacta aaagagggac caatgcaagc agtgcctctg tgttcatctt ctggacgaat
      121 tggtttaaca ctaacgatgc acgctgcaca aaaactcata tgggctgaac attgcaaggc
      181 tgccaattta atttgaaatg acttgacaga aaatctctag gccaccaaac actattataa
      241 agcactgtat actcattaaa ggtctgagcc cctccctgag ggcaggctcc tcgtgaggct
      301 gtccctctgg cataacatgt gatagagcta atctgtcttc acttggacag cattgcggat
      361 atgcaaaccc aggtggcact aataggttta cagtaataac tatggaattg gatacagtat
      421 gttacactgt gagaaattcc cacagatcaa tttttgtggt gaaggttaac cagcagatac
      481 agagacataa tattcttttt tcatggatct gctaacaatt ttatggtttt ctctcccata
      541 cttggacaga atataaatat ttaacttttc aaacatatct acaatatatg tgcattctct
      601 tggaaagaca gcttctgttg tcagttattc cagcacaaac ctggaggaat tccattggct
      661 tcaaagaaag atgccaagtg agagcagaa
//
LOCUS       KCOD01000787             737 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 87643pyr ultra-conserved element locus
            uce-1194, sequence.
ACCESSION   KCOD01000787
VERSION     KCOD01000787.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 737)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 737)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..737
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="87643pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>737
                     /note="ultra-conserved element locus uce-1194"
BASE COUNT          208 a          174 c          155 g          200 t
ORIGIN      
        1 ccgagtgaaa gagcagagtc gcagcaccgg tgacccgaga aacctcattg ctccacttat
       61 actggcacaa tgtcatgttc tcagccactc catcaccagc aaggggaaaa aaaaagcttt
      121 tcctttcctt ttagtcaaag gcagtgggta agcagagcac gcggttcaga gggtcattaa
      181 aaagcatcaa aggaggcagc ctcatgatgg taataagacg gctgcaagga aataaagtgg
      241 gcattgatct gcactatcga gtgtgacatt ttaaccgaag ctaaaagcca agagcagatc
      301 tagccctctt attcatctgc ctgcctgttt tagtaaattg tctttttttc ctccaaccag
      361 tggcctcaga ggtcacttca tattagctgg cttgttaata ccgaggcaat caatacttaa
      421 tcaacaagta atgggatttt gcagtcatcc tgtatgatct ttcaataaag ccccgaatct
      481 atctcagccc attcagagcc tgactaaagg tgcacgattg ctgcagagca gggatttgat
      541 ggtctgatgc tcttaggctg atctgcatct gattaagaca ccatgcagcc actgtccttc
      601 acccttttgt tcctttatcc ccgtataatg tagcatggca cagaaattcg tcatcttagc
      661 ttttagatgc aacagcaaag gaattaatat ttccttagtg catgatgatc cagcctcctg
      721 gtcatgatat gcaacca
//
LOCUS       KCOD01000788             749 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 87749pyr ultra-conserved element locus
            uce-6426, sequence.
ACCESSION   KCOD01000788
VERSION     KCOD01000788.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 749)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 749)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..749
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="87749pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>749
                     /note="ultra-conserved element locus uce-6426"
BASE COUNT          146 a          220 c          174 g          209 t
ORIGIN      
        1 ccatgtatct tcagcaaagc ttcgcaggag atgcaaggag agcactcgga caaagtcctt
       61 aggctgtgag gcccccaaag agagcgctcc aaagcacagc gagtcggagc cagactctga
      121 cagaaagggg cgagtttgct ccgccgagca ggacatggct tttggctaca agcaaaaagc
      181 cggaaaaggc ggaacactgt tttccttctc cttgcaactt ccagagtcat ttccttccct
      241 cctggatgac gatggctacc tgtcgctccc taacctctcc gaaaccaacc tcctgcctgc
      301 cagtgtgcag cactacctcc ccatccgctc cccctccctc gtgccttgct tcctcttcat
      361 ttttttcttt ctgctctctg cctctttctc agtgccatac gccctcactc tctcctttcc
      421 tctggctatg tgcctctgct acctggagcc caaggcggcc tccttgagtg cctcacttgc
      481 caatgacctg agtgacagtt cagaggaaga ggtgtgtacc tcggcatcga acacactctt
      541 tttcgtgttc agtgcttcag tcctaaccag tgttagatag tggtcctact ttcagagcct
      601 catttctgtc tgtgctgatt tgttagaagg tttttctctt cttttttctt catgccggga
      661 gtatagcttg gagcccaggg ttaggcacaa cactgtgtgg aagtggcttg gcttgaactg
      721 tgtcagctgg tgcaaagtga tttgcactg
//
LOCUS       KCOD01000789             677 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 87859pyr ultra-conserved element locus
            uce-3356, sequence.
ACCESSION   KCOD01000789
VERSION     KCOD01000789.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 677)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 677)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..677
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="87859pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>677
                     /note="ultra-conserved element locus uce-3356"
BASE COUNT          213 a          118 c          136 g          210 t
ORIGIN      
        1 cactctgcga gtaattgtct gcacagcagt gacagatgtg caatatagca gcttcttcag
       61 gaaaaaatta acagtttgtc cagcatgtca gcttgctctt tttagtgctt tggaggtctt
      121 ggccccatta tggatgattt agaaattgag gcaagctaag accagctgcc tgggttgaaa
      181 gccttagtta gtagccctca tctgcattcc agtattcact tacatctaga aattggtagg
      241 gcccctctgg ccacaagatg agtatgggct gacaatgcct tgatttgttg agagagagaa
      301 taaatgggtt tttcagaaga tgaggaaata tcaccattac tggccaattt acagcatttt
      361 atctgttctt caaacatgtc acttttgtta ttgttgcatg gtaattacat agtgaaacgg
      421 aaagaaaaca aattctggtt acatattcag atggattgca aaatcatata atcctgataa
      481 atgcccattt atgatacaca cggatgaaag gttcatttta attttgaata gctagcacag
      541 ccataaatag gatataggat tagatcccac agaatctgat tacctaaaag caaatagtat
      601 ttttcttcat ttcataacca ggaaattcag tgtgtgcagg gtatttaaat aagcaggttt
      661 tccactaaaa tatatga
//
LOCUS       KCOD01000790             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 87970pyr ultra-conserved element locus
            uce-1868, sequence.
ACCESSION   KCOD01000790
VERSION     KCOD01000790.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="87970pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-1868"
BASE COUNT          193 a          127 c          123 g          197 t
ORIGIN      
        1 ataaatgtca tgagttgtta acaagcacgg tgtcaagcag ggcaaaatgt aattctgtat
       61 ttttttaatt actggaatta acagaatatg gcactaattt ctacagctac cgcttctccc
      121 cctccctgaa catgaagctt gatttgtgtt cttattaact ttgtcctata aatgaccttg
      181 caaggagagt ggttctggag gctaagtgaa acaatgtcta tattttctga agctccaggc
      241 taagttttat taatgtaatg tctaagatct ttgaagttgt gactttacca ggaaaatcat
      301 aatctccaaa cctttattca taatgggtat gacttccagg gggaacagaa tacctgctgt
      361 gctaattatt tcaattatca gctactacta aaacacgtaa tggattttct ctgcttccac
      421 aggtaaaagg catgacatta tggaacttaa ctctgatgtt gtgaacttga tctcccacgc
      481 tacacaggag agattacgag ggctcctaga aaaactaact gtaattgctc ggcacagagt
      541 atcaacccac aaggtaaagg aaatcattag caagttttgc accaaagttt tcctgctttg
      601 cagccttgaa ggtcctcttc caagtgtggg cacatcacag
//
LOCUS       KCOD01000791             811 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 88081pyr ultra-conserved element locus
            uce-5382, sequence.
ACCESSION   KCOD01000791
VERSION     KCOD01000791.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 811)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 811)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..811
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="88081pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>811
                     /note="ultra-conserved element locus uce-5382"
BASE COUNT          237 a          138 c          170 g          266 t
ORIGIN      
        1 tttgcataat aaatgtggtg tggggagcca acgttttatg aatgctgtaa tgtgttttta
       61 tttctactgg ttcaaaacag catttgcttc ttgaaattaa atggaatcgg attgaggttt
      121 gtccttttag agccttgtcc ggtacaaggt aatgcattga ctaccctatt gatattgcaa
      181 tttttctatt atgcattgaa attctcatat tgcaagttgc tggggccctt gatatttcac
      241 aaatttggga tcattaagga tgttttccat gtcagagcta tactaattgt gactgtgttg
      301 atgacaccca ccattctact taaattgaaa attgctgctt actaaagatg ttggaccctg
      361 agcttaagtc cttggtgact gatttgatta gtccatttga gtgagaacag ggcaacacag
      421 gggctatgtt aatggaactt aaacaatagg ccatcactaa tcagagacct caaggttgaa
      481 gtgaggttaa ttgttatgcg ggtggtattt gaaaagaagt gttggctggt gtaatgcact
      541 atgggactgt agcatttgaa catgcagccc taaggccaga ggttttgttc agtttcccaa
      601 tgaaatttaa agctacatta tgtacatctc taaacagcag cctatatttt tgatacatca
      661 caagagcaac aactaattga taacagaaat gagccccccg gcacaaaatt cagatccaaa
      721 tctggtactg gattttaatc cctttctaaa cttggtggga attgattgag ttttgattaa
      781 gcccttcatg aaatgcacat tcaagattca a
//
LOCUS       KCOD01000792             667 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 88185pyr ultra-conserved element locus
            uce-5716, sequence.
ACCESSION   KCOD01000792
VERSION     KCOD01000792.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 667)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 667)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="88185pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>667
                     /note="ultra-conserved element locus uce-5716"
BASE COUNT          198 a           81 c          142 g          246 t
ORIGIN      
        1 gtgtgccata taagacttta attttctgag cttaatagag tatttaaatg tctgtgcaag
       61 caagagagta tattctttgt gccttgtatt ttgtagagct atcagtataa gctggtaaag
      121 ttttgtatga agaaaaccct gaggggagct gtatagatgg tgagatttta ggttttaatg
      181 tatttgttcc atttttgaat gtatatagga atatgttgaa aatgtagata tatgccacag
      241 agtctatgta ttgtataaaa gatggctcta gaatttcggt actttggccg gaagaaaaca
      301 aatacttgca cattaatgcg attgtttatt tttgtaccaa agacaaatgc aactgatatg
      361 gcgaactgcc agtctaagta aagttttgca cagcttatat gatactgtac tgaatgtaaa
      421 aacaaaagaa aggtcagggt tagggatctt actgaactgt gaattttttt gtttgggtcc
      481 aattatctac agaaggagca ttcatacata acaatattat tttgctgttc ttgtagttcg
      541 cttccatggt agataagttg gtggccgtct tggagtcttt ttttttctct gcacttactg
      601 taggagattt taatatattt ggattttagt aagctattgg taaaatagtt ttcgactttg
      661 agaattt
//
LOCUS       KCOD01000793             723 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 88297pyr ultra-conserved element locus
            uce-3907, sequence.
ACCESSION   KCOD01000793
VERSION     KCOD01000793.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 723)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 723)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..723
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="88297pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>723
                     /note="ultra-conserved element locus uce-3907"
BASE COUNT          206 a          136 c          114 g          267 t
ORIGIN      
        1 ttatattcag gaaagggaat ttcacgcaca accatctgaa gcacaacata ttccacacca
       61 tttagaacta tctcaggttc tcttttcata ttaatcactt ctacttaatt taaaatttac
      121 cagacaacca ctgagaaata ttccagttta aatatttgac ttgagttgct catcttttgt
      181 ttaatgacca actttttaca tggatataaa acagtgttta aaatgtattt tgttccctcg
      241 ttctgaatag acttccacta ttatttttta ccaactagtt tcattgaaag gtttccagca
      301 ttacaggtaa tgtaaagtcc attaggtcag gctcttcata gcatgacatg cagtaaatta
      361 caagtgcttc aagcagctca gtgaattaca gttcatcact ttgaaaggtt cccactacaa
      421 gactacagat atcagatctg gcagttagga tccaattaac actttggtca gaataatcag
      481 attgtgtgtg taagacttgt ataattcgtt tattgcttcc atgcatcttc tgtctgtagg
      541 taaatttgtt gctgttattt caaagcttgg aatcagtatt tcacttgcct ttaggttata
      601 tttcaagtcc ttttgcagtg cagtgatgaa ctctccctgt tccaccaatt tagatcactt
      661 gtcccataga tattactgct tgagaaatgg tttgtttctg gtagttttgt tttgtattct
      721 tac
//
LOCUS       KCOD01000794             677 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 88406pyr ultra-conserved element locus
            uce-1435, sequence.
ACCESSION   KCOD01000794
VERSION     KCOD01000794.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 677)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 677)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..677
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="88406pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>677
                     /note="ultra-conserved element locus uce-1435"
BASE COUNT          203 a          106 c          121 g          247 t
ORIGIN      
        1 tccaatggaa agtggtttca ctactggtac agtatcagca ccgaagggtt ttattccagc
       61 aagcactgtg gttgagtgac atcacctcaa ttttttatta tccaaaatat ttcatttttc
      121 atattcttta tttataaagg aacaatgctg ctgtaaatac attttttatt tcattccatc
      181 accatgagat gcagttccct atttgttgaa ggggtatata agctttctaa tggtgtcttc
      241 agaaatttat aaaatgtaaa tactgatttt gatggtcctt aagatgtgtt taactgtgag
      301 actatttaac taatggtgtg gatgtgattc gtcatccagt attaagttct tagtcactga
      361 ttttgtgtac aaaataggaa agagggaaac tgcagctttt cattacaaac ttcttgaatt
      421 gccagcttct tgagttttag caaactctaa ttatgcctct ggatagtaca tcatgcattt
      481 ctctctggct ttaatttgct aaagctgtgc acatatgtaa aaaaatagat tattttaggg
      541 gagaagtagt tctagaatta ttgcttatgt aatttcttaa gcagttatgc tcttaatgct
      601 taaaagaagg ctagcattgt ttgcacaaaa agttggtgac ccccccaaaa tagtaatgaa
      661 attacttctg ttcagta
//
LOCUS       KCOD01000795             619 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 88517pyr ultra-conserved element locus
            uce-6230, sequence.
ACCESSION   KCOD01000795
VERSION     KCOD01000795.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 619)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 619)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..619
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="88517pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>619
                     /note="ultra-conserved element locus uce-6230"
BASE COUNT          168 a          133 c          176 g          142 t
ORIGIN      
        1 ggtgagagag gcagggtgaa gtgggtctcc cgggctctgg tggagttatg gatgcgggag
       61 gtgcaccgca ggagaaaggc gacacgtccc ctttaaaagg aaatataatt tacagtgtgc
      121 agccaggcgg gccatagttt caatctcgtt tactatagag aaaactctgc tagctgttct
      181 ctatcccaca aatccgattt aatcagacaa gccagccagc gtggcttgaa gtaaaaacgg
      241 ataattagta aacagagagc tacttcagtg cttcattggc attcgagccg ggctagtgtg
      301 tcgcatttaa aatgcagtct gatgaagttt acaaaatcaa accatttgtt actcctattg
      361 aagaggcttc aggccacttg caattaaatt ggaattagtg cttagaatga gatacagcaa
      421 attcatacta aaaagggatc tgactttcag acatttgact tcaagatgct agagcacgcg
      481 tgtgtgccag cctgccggcc ccccagagcc cccagcagca cgtccagacc ggctgtgtgg
      541 ctgggatggg gtgactcggg gatgctgtgg caggagggga aaagggagtg gagccaatgc
      601 tggtgagctg agccccagc
//
LOCUS       KCOD01000796             662 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 88623pyr ultra-conserved element locus
            uce-7985, sequence.
ACCESSION   KCOD01000796
VERSION     KCOD01000796.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 662)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 662)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..662
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="88623pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>662
                     /note="ultra-conserved element locus uce-7985"
BASE COUNT          190 a          128 c          132 g          212 t
ORIGIN      
        1 acatggtatg taagagcagg gagacttttt gtacgaaact ttgtggctta caatactcct
       61 tctgtgaggg aatggcgtcc agtttgggac tgacaggcag cctacaagct ttgtgccagc
      121 acactaatcc cttgtctgtg agttactgaa aaccttcttg catttttgtt cccagttcac
      181 cttggtgacc aattccacat atgataaatc cagcgtctgc agaaaggcag tcacctaatt
      241 gcacagtgaa gcagaagaaa gccttgcaaa tggtatacaa ttttcaaagt gttccaagcc
      301 ttaggcaaaa gcctttcaac tatgtctaaa actgaatgat aaaatatgtt gtacaaatta
      361 tctgtgaaca ggaaacatgt ggtagtggca ggggactgaa atgtaacact tgtaaagaaa
      421 tgggaactgc cagtcattta taccctttta cttttctctc tgtcacaagt tccatgatat
      481 tttttttcac catcagttga tgctcaagtt tgtaataaga catttatcag atctcactag
      541 gccaattaca gctttgtagc ccccgtatga aactaaaggt ttagctttgt ctctttcttc
      601 ttttatagaa tttctgtttt atcattacaa ggatgcgtgt ggatggaatt ctgaaagagt
      661 tt
//
LOCUS       KCOD01000797             700 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 88733pyr ultra-conserved element locus
            uce-5441, sequence.
ACCESSION   KCOD01000797
VERSION     KCOD01000797.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 700)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 700)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..700
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="88733pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>700
                     /note="ultra-conserved element locus uce-5441"
BASE COUNT          177 a          208 c          137 g          178 t
ORIGIN      
        1 ggagccaact tacccccgag ttacatccca ttcacaagcc cgggcttcct ctgccgcccc
       61 tcctctgcgc gccagcctct gctgctgcag agaggccaca tatgtctgca aacacttcta
      121 ggcagaaacc agccagtgca gaacaaagac agccggggtt gccttcatct cagcacaagg
      181 cagccagtag ctattttcaa gcttgttcgc tctccccctc taagggcacc ctgctctgtt
      241 tctcccctct ttgcctgtcc agctactgca caacacacat caattattca ttgcttgtct
      301 cccggtttcc aggcaaaacc aatcacagat ggagtcttgc taatgggctc atgccgtact
      361 tgccaacagg ctatttgtgc tcaagctaca accctctaga gacaataaag agaatcaggt
      421 taagctttaa aacttcacac gtacgcgaac agacctaaaa cggcgataga catgtaagca
      481 tccctatgac attgctcagg agtacgtctt cagcatacag catggcagaa ggctgctgta
      541 aatcttccga aagggtttta agaaaatcaa acactcatct cacctcagct gcatgttagt
      601 gatattgatg gttctctttt ctgtctctag tgatccatgt cttgctttcc cattacacag
      661 agaggtatgt ccttctctca tactcgtgca cgcacgcaca
//
LOCUS       KCOD01000798             690 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 88843pyr ultra-conserved element locus
            uce-1523, sequence.
ACCESSION   KCOD01000798
VERSION     KCOD01000798.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 690)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 690)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..690
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="88843pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>690
                     /note="ultra-conserved element locus uce-1523"
BASE COUNT          215 a          146 c          136 g          193 t
ORIGIN      
        1 aaacttcttg aaatagacga gatctcgtga tacatgtttt tcttctgtct tttaacaaaa
       61 gaaaagtcac aattaaataa gcattattct taagaatgtc tcattttctt ccttcctttt
      121 ggcagtttcc taggctgctg tagattgaag aaaataggaa taagcatctt tcgaccacaa
      181 acagatgtgc ttgataaaga aaatgtcagc aaaaatacta aagcaatgtg tcacagcagc
      241 tttctgacag atagagggaa aaggtaaaaa atgttctatc atgtccgaca aggtgttctt
      301 tttgagattt aaagatcact gtgcaacttt aaacatgttt gtcactttgg ctctgactgg
      361 agctatctgg agcttcacaa gaactttatc agctcagcat aggggggaag aaagaagccc
      421 attcccattt atctcagcca ggttcccttc aaagccaaca aataaattac agtgtacatt
      481 tgatacaaat tgatttctta actcaaataa caatgttgtc ctcccagtca ggccatgtgt
      541 cactcattcg cgagcctgag tgaaaggctc aatctgtctg cgtgacagaa ataggcctga
      601 cgcatctcac cgaggaatgc taataacccc ggcctggccc gggcctttgt gggcaagccg
      661 cgataaggaa aatcagcccg tcctgtcaaa
//
LOCUS       KCOD01000799             285 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 88953pyr ultra-conserved element locus
            uce-5895, sequence.
ACCESSION   KCOD01000799
VERSION     KCOD01000799.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 285)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 285)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..285
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="88953pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>285
                     /note="ultra-conserved element locus uce-5895"
BASE COUNT           77 a           74 c           60 g           74 t
ORIGIN      
        1 cccagacaac agccatcaat gtttctgact atcacaggag cacgaggggc catgcataat
       61 tgactggaag atgggctaaa actgtgccca atcagtgtgt gatcaaaacc gcgtggaata
      121 ttcagcgcca cttgattaca cctcgtcctc ccgctctcct catgaaatct cttcaaggtc
      181 cagagtactg taataagatc attactgtca agcgctacga atcgcaggca atgagtcttg
      241 ggataggaag tcatacttca caagctcctc tggtcttcct ttttt
//
LOCUS       KCOD01000800             730 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 89064pyr ultra-conserved element locus
            uce-843, sequence.
ACCESSION   KCOD01000800
VERSION     KCOD01000800.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 730)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 730)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..730
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="89064pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>730
                     /note="ultra-conserved element locus uce-843"
BASE COUNT          193 a          183 c          169 g          185 t
ORIGIN      
        1 tcagacccat ggatctacag ccagtcacca ccatcagccc cgccccagct ggtgtggagc
       61 agagcctggt gacctcccag tgcgtcgggg agagcatgca gtgctgctcg gagcaaggct
      121 cagtgcaact gggagcaccc tggctgccca acaacatctc ggaaaattgt tcagctggcg
      181 gggggttgga tggagccgac acttaccccg agagagagct tccaccagag cagagcagcc
      241 aaacggtcac ggtagacttc tgtcaggaaa tgactgataa atgtacaaca gatgaacagc
      301 ctaggaaaga ttacacctag tgactcgtaa ccttaacgtt acacctggtc aggtgttctt
      361 cagtcagcca gtggcagtgt tcatttgttg tctagaagaa cgtatttggt gcacactaca
      421 gtggtcttag cagcaatact gtttttaagt attccctcct ctctacaagc aggagttctc
      481 ttcacaatgg tgctatccct tgctcaggca gggaacgaag cagtggcaac actgtctgtt
      541 tttgtatgtt gatttcaatc ttaacaggga tggacataac acctctgagg acccaaccgc
      601 agcttttttc tcagtggccc atgtcacaaa accctaactc aggaatttcc tctgaatgtt
      661 caatttttca ttgaagacag cttctttaca catcaaagtt ttatagctaa actgtacata
      721 ttatatataa
//
LOCUS       KCOD01000801             588 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 89174pyr ultra-conserved element locus
            uce-3105, sequence.
ACCESSION   KCOD01000801
VERSION     KCOD01000801.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 588)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 588)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..588
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="89174pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>588
                     /note="ultra-conserved element locus uce-3105"
BASE COUNT          167 a          109 c          135 g          177 t
ORIGIN      
        1 tgagtggcct gaaaactgct gctttatctg agataaacct agctcctctt cccatgtgac
       61 taacagatgg atgcatccac tatgtcatgt taaaggaata attaaaagct tcatttacat
      121 gcaacatgaa atgtccagaa aagatgtgct gtgatcataa ctttggattg ttttggtttt
      181 ctataataaa tgaccctcca aatagtggtt ggccggaggc atgcaagaag caatccatag
      241 tatatggatt tgctcaatgg catttaaagg accctgatta aaattcagcc caggctggag
      301 tgatgagaag actgtttact gagggctgtt tgaagttgta cactgcactg cagacagacc
      361 agagggatgc acagattgaa acgttttacc ttgcctgtct gagtctggct gtcaggagcc
      421 gatggcactc taacattctt gagcggattg actgctgctg cttatgagtc ttaattttca
      481 ttgaaggtgg cacaagctca gcatcagaga tcatggctat aacaacaatc ttgttagctg
      541 gagctgtgtt gactactaca gatgctatgt ttagatattt gattttaa
//
LOCUS       KCOD01000802             343 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 89279pyr ultra-conserved element locus
            uce-6913, sequence.
ACCESSION   KCOD01000802
VERSION     KCOD01000802.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 343)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 343)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..343
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="89279pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>343
                     /note="ultra-conserved element locus uce-6913"
BASE COUNT           98 a           77 c           63 g          105 t
ORIGIN      
        1 caggaatctt ttattgagat aaatatatcc tacaaatctt gaaagaaaac gaacattctc
       61 ctaaaagcag actgtaaacc agttgttttc cagaactttg tcctcttata atggttccag
      121 ctctgctaag ctctctgcta caatatctca gctcgttctg tttgacggct gttctcctgt
      181 catcactcat tttcagtggg caagggggag caattgctgg gcatcaaatc atcatcaagt
      241 aaaccagcct tgacactagt taaaaaggga gatggatggt cagttggctt ctacagaaaa
      301 tattctccta agtatcctat cccttgatac cagcctagtg ctt
//
LOCUS       KCOD01000803             726 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 89387pyr ultra-conserved element locus
            uce-1860, sequence.
ACCESSION   KCOD01000803
VERSION     KCOD01000803.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 726)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 726)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..726
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="89387pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>726
                     /note="ultra-conserved element locus uce-1860"
BASE COUNT          208 a          142 c          130 g          246 t
ORIGIN      
        1 tcactttgcc attttgatta tgacaacaaa atgacaccat attgaaatgg attttggaaa
       61 gaaaggctaa ctgtccaaag aggtccatgc tcactctaat taaaattggc ttaggtggca
      121 caaccttcat aattcagact atggctatga aggatatgca tgttgaaagc actctttgct
      181 cattagtgct atttctgtca gacactgcta cctgctcttt tcttaatgaa tgctaagcca
      241 tctcttcaga agattgtgct gcttccctga actgagggaa ctgtcttatt tcctcccaag
      301 ttcgttgaga gtaaaatcgg ggagtcacct ctttgacatt tcccaacctc tgtacttatt
      361 tatctctttg agaccctgcg ctccagagat atcactgtct taattaagaa gaaggatgtg
      421 accatggtaa attgactgat tccattgatt aaggactagc tgtacaagta acattgattt
      481 taacagtggg tctacataaa tgtaattgtt cgaacatggg gctgcataat tatggtgatg
      541 tacgagaata gttggtttgt ccttttcaac cttcactaac attcttttgc atggtaatgt
      601 acctcgttca attagcagaa atcttaaatg ttacaaaatg tcttttgtga aggcacacag
      661 taatcattat agtctaattt aatctaacag catcagacag atacatctct ttcttttcct
      721 ttcttt
//
LOCUS       KCOD01000804             738 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 89500pyr ultra-conserved element locus
            uce-7522, sequence.
ACCESSION   KCOD01000804
VERSION     KCOD01000804.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 738)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 738)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..738
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="89500pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>738
                     /note="ultra-conserved element locus uce-7522"
BASE COUNT          200 a          166 c          146 g          226 t
ORIGIN      
        1 tacagccata ttttctcttg atgggtttct gtcctgtcac tcactttagt tgtactaata
       61 ccaggaaagc ctattgtatg ccaaatttga agtgcttcaa caacttctat ttgcacataa
      121 aatgggctaa gcaacaattt tgttggcttt cctccttttc agttgccaag tgtgccaaaa
      181 gagaaaatat ggcttccata atttttttct ttagataaac ctcaaggtct tgcagcaaaa
      241 tttctttact tgatgtgcta caagtgatct aggctctatt gtagaatttt ttttccaaca
      301 tgcttcttcc cttgcaacag gtaccgtttt gcagagattc gctaccatcg ccctgaggag
      361 acccacaagg ggcgtacagt tccagctcat gtggagacag tggttttatt tttcccggat
      421 gtttggcatt gccttcccac ccgctcagag tgggaaaccc tctcccgagg atacaagcag
      481 cagctggtcg agaagcttca gggtgaacgc aaggaggctg atggagaaca ggcactgaac
      541 gctaatccct ttttctattt ctgcttctca caggcacagg aacacaggca caccacatac
      601 tacacaacat acatacatag gaggaacata actggtaaca atgactggta aaccagcttt
      661 cagcagtgta gtgaatgttg ctttttattt ttatttcagc tagttcacta actctaaatg
      721 tgtatcacaa atggaatt
//
LOCUS       KCOD01000805             662 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 89613pyr ultra-conserved element locus
            uce-3115, sequence.
ACCESSION   KCOD01000805
VERSION     KCOD01000805.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 662)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 662)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..662
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="89613pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>662
                     /note="ultra-conserved element locus uce-3115"
BASE COUNT          203 a          103 c          129 g          227 t
ORIGIN      
        1 gtgggaggga aggtgaagca tttgagtcaa ataagtctgt aaaatattaa aggaagcaaa
       61 taaactggcc agtgaataaa tcaggaaaac atggaagagg aggattaaga acttgccaat
      121 aagacaaaaa ctgtccactt tggtcaccta gtgccagatt gctatagcat gctccttttt
      181 ccctttctat ttcagcctct tattaactct gctgtctgtg tctttccagt tcctgtggag
      241 tggtgttgtc aattgtgttc ttgttggtag ttttttttca ctattctgct tctataactg
      301 atctactaat ttgctgtttt gaactcagcc tttgtcggaa ttatgggtaa cacaagatca
      361 tacaaactgc tagactggaa tagtttcaat tcaggtattt tattagtcat tcagtactac
      421 atatgctgac agaaattatg gcagctcagt gaagttatta gaaatgctct aggatattta
      481 ggtttaatca tcaaatgcct aaatgtgatg ttttcatgct attaaagact ttatttaaaa
      541 ttaaaaacca taaaatagta ttgctaagaa taatttaata tcaatctgga aagctgaatg
      601 ttcagatgtt tcagctcagc atatttaggg aattccttac acagttggga ttgtgtcaag
      661 tg
//
LOCUS       KCOD01000806             774 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 89726pyr ultra-conserved element locus
            uce-729, sequence.
ACCESSION   KCOD01000806
VERSION     KCOD01000806.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 774)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 774)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..774
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="89726pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>774
                     /note="ultra-conserved element locus uce-729"
BASE COUNT          252 a          133 c          128 g          261 t
ORIGIN      
        1 cccttacatc acattttatc acagataatc caagaatatt gtttctctga gtaataaaat
       61 tgttctttag tgcatgacca gagtaaggga tattgtgtct tttaaacatc acgtatagac
      121 aagaagatac aaatgagagt taataaccat caaatgtgtc tatttccttt ccctataaat
      181 tagagcatgc tttcctactg aattttgcaa gaaggaaaac agactccctc ctgctgatgt
      241 ggagtagcaa tgctaaatct ccctaaagat tcactctggc ttcttacagc tgtatgttag
      301 taccttttta tatgcaattt tacttcattt agtctttaag gttgtgcctg aggttagttt
      361 aaaaggttag ttaaatgtta atggatgtta atgctgcaat taaattgtta aatcaattga
      421 aaactgtggc tccatctcta tctgtgttag tgccggcctg agttgcattg gcgtataaat
      481 taaaagctgt aaatctagtg aagtctaatt agagaccaaa tttctcattt atcttatttt
      541 cacaggactg taagcactga tagataatca acgaagggct aaaacttttt aacattaaaa
      601 aactatttta tctatttcag gactcaggtg actgattata attcagatcc aattactgta
      661 aaaggtcata tgtgaaatga agttcttaca gacactacaa gttttatttt acaagtttgc
      721 atacactgct gcaccatcta catcccaagc aaaaggaaat acactgtacg agat
//
LOCUS       KCOD01000807             796 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 89838pyr ultra-conserved element locus
            uce-614, sequence.
ACCESSION   KCOD01000807
VERSION     KCOD01000807.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 796)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 796)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..796
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="89838pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>796
                     /note="ultra-conserved element locus uce-614"
BASE COUNT          191 a          203 c          188 g          214 t
ORIGIN      
        1 aatctcccac tgaattgctc ctgagtgctc tcattggagt gagatccttc ctctgtccaa
       61 catgagcctg aacctagact tttcttgcaa aattgaataa gagctgccag gatgccttca
      121 tagtaatttc tctacaggtc attcagtccc tcccatgtcc tgtcactttt ccaaacatcc
      181 acgtgtggct gaggagggcc agtatcagca cttcacaaca gataactcta ctgtctacac
      241 aatctacagt gaggagcaca catgggacga cctgcgggca tgtgggtgtg caggtctggg
      301 gggaagagtc ccctcacaca tcctcgtacg caggttacct cttgcttgtc atggttacac
      361 ttctcgcaca tggccggcga ggagtaatga tggaagacgg agcccgatag gttatcgatg
      421 atcattaact ccccgtcgaa ggagtcctta ataattaaag agacactgtc cagccataag
      481 ttctcctagg ggacaagaaa ggggggagga tgggagagat cattttaaga atgtcgagtt
      541 ttgctttcaa gtttcatgtg aatttggggc tgggttctcc accctgactc atctggagca
      601 gcattctgca ggtacttgca cagggtcact acatttccag agggtgtgta aaggtgccag
      661 agttcaatga aaataaggag ggacagtctt cactcacttt gctcacgtct gccttccagc
      721 tctgctggag tcactcactc tcgatctgcc atttactctt ctcctgagct cccctctcaa
      781 atttgctcct gtcaca
//
LOCUS       KCOD01000808             751 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 89951pyr ultra-conserved element locus
            uce-599, sequence.
ACCESSION   KCOD01000808
VERSION     KCOD01000808.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 751)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 751)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..751
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="89951pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>751
                     /note="ultra-conserved element locus uce-599"
BASE COUNT          239 a          131 c          158 g          223 t
ORIGIN      
        1 agtttgcttt tagaaagttg aaggcaggca gcaagggtat ctttcaaatt tgaccatcca
       61 aaaagttatc agaattgccc tcgagggccg acctagttcc cagtactgtt ctgagagatg
      121 aaattatgcc aggttggtca tttgacagaa gtactctaaa acaaatttgg acagcgggag
      181 agaggatggt gacatgaaca cctgtccttg ggatcttatt tagaaaatgc agcaagattt
      241 tactttaacg gggtctttca ggcagaaaaa tatggcagta acatgtgtaa aggaaatttc
      301 aatatgtttt gacaatagtg taatctagag aaagtgttat ccctcttgtg gaggtcatca
      361 ttcttaatac agtgtgtgtc atcaattctc aggacaacag ggaaaatgat ctagtcaata
      421 catatgaaac agaaatcatg cataaacatg ctgcctcact ataaagtggg tgacacaagt
      481 gaaaattgga tagcaggcct ggatgcaatt ttccataact tcttattatt cataagatcg
      541 tgtgatctaa taagccacac ctcaaattac tgtccattga aggtactctt gagtgataga
      601 ttctgacaaa ccagacagag aatatattat gattaagatc tgatgccagt actgctggac
      661 tctcagccgc tgactttttc cagctggtgt tgttctttta ttttgtttcc aaaatgaggg
      721 agcacaaatc cctagtttat aaatgcttaa a
//
LOCUS       KCOD01000809             606 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 90063pyr ultra-conserved element locus
            uce-6743, sequence.
ACCESSION   KCOD01000809
VERSION     KCOD01000809.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 606)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 606)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..606
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="90063pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>606
                     /note="ultra-conserved element locus uce-6743"
BASE COUNT          170 a          158 c          121 g          157 t
ORIGIN      
        1 gccctgcatg cttcagtgaa aagcaacagg gccagtgccc gacccactgt acagagttaa
       61 tgtcctgcaa tttttccctg ctcctgagag tcagagggag tttccagctc cacttttccg
      121 agcagctgcc aacgttgtca gcactgatct gtcagaaagg atttttcctg gcaaaacttt
      181 gaagctcctt tctgacatcc ccaacaaact aattgttgtc tcctgcctcc gagagccctc
      241 tgaagtccca acgagttagt gtcttctcaa gagatgagaa aggggactca caaaatcaat
      301 ttatcaggct attacgcatt gtcatcagcc aaaacaaaaa cctgctaaag acaggagaaa
      361 aagaaggaga aatgggtctc tgagaaaagg ttacagaaca tccatcttct ctcctcttcc
      421 gattgtttcc tttctttacc cattttcata cccatttccc tccactaaaa gacactttat
      481 gacaagcatt gtaatctctt tagaccgggg ggaacctctt ctttaggacc aactctttgc
      541 aaggcgtgag tgacagcggg aaggggtcca attgccactg aagacacttc ggcaataaat
      601 catcca
//
LOCUS       KCOD01000810             398 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 90172pyr ultra-conserved element locus
            uce-1268, sequence.
ACCESSION   KCOD01000810
VERSION     KCOD01000810.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 398)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 398)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..398
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="90172pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>398
                     /note="ultra-conserved element locus uce-1268"
BASE COUNT          126 a           66 c           74 g          132 t
ORIGIN      
        1 ttggcgaaaa agatttagat aagaatactt attatgatat actatatttt gcctaaaatt
       61 ccagtgacct gttctgtttc atatatgaaa ggtgcacatt aaaagaatat gagctagcaa
      121 atatctttac tgaagcactg ttggcagcca agatcactga caacttcctg gctgtgattc
      181 ataatctata ttggtgcctt tgagacagca agctattgat ttttcccagt ctataatcca
      241 agaccatata cacagcttgt tagacatctg tgggaatata aactgagttt tgatacaatt
      301 tagggagctt ctgttagcag ggcacttttt gtctttgaga aaatctttac acatctgtgt
      361 aatcttgaag agaaacagat aattcaatac cgtttggg
//
LOCUS       KCOD01000811             410 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 90274pyr ultra-conserved element locus
            uce-5156, sequence.
ACCESSION   KCOD01000811
VERSION     KCOD01000811.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 410)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 410)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..410
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="90274pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>410
                     /note="ultra-conserved element locus uce-5156"
BASE COUNT          153 a           65 c           59 g          133 t
ORIGIN      
        1 tttaatcatg tctagtttca tagacaaaag taatcactaa aaagccagtg gctacaaaaa
       61 ctgcaaacaa aatgaacctt taaaagctaa tgacttaggg gtgattttac agacatataa
      121 agtatgttag gggcttacac tatttgtcat taacacatat tttgaaagct cggctaatat
      181 aatgtgacac aaaattagtc aaacacaatt catgcaatat tgtttaattt tactcctcat
      241 ttaacttggt tttaagcaaa atcattatgt cacatgataa cgttcacttg aacaagaaat
      301 attttataat ggtgtctgcg tttcgaaatg agttattagg agctacatgc tgaacacatt
      361 cttaactatg aaaactataa agctaatagc ttcatcatat tttgacaaca
//
LOCUS       KCOD01000812             428 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 90380pyr ultra-conserved element locus
            uce-5595, sequence.
ACCESSION   KCOD01000812
VERSION     KCOD01000812.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 428)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 428)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..428
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="90380pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>428
                     /note="ultra-conserved element locus uce-5595"
BASE COUNT          138 a           97 c           58 g          135 t
ORIGIN      
        1 tttttgtgtc aaaacaatta ggcacacata aaactgccag gaaatacccc ttttcaaagc
       61 tgtttttcac acccgtgaaa gataaaaagg tgctcattaa tgtttggggc attaccttgt
      121 aagggatata acaactcagt aagacaaagt gaaaaatgag gtagataatg taacaataat
      181 aaattatctt gacattcact ttctttatgg tccttcaagg gtcattgttc ccaatttact
      241 aagagaacca catcatcaaa atttttcttc aattatcatt tttttcttcc ttctgcagta
      301 ctgcaaatag aacaacttcc cttacgctag ccacaacact acatctccac cctttaactc
      361 agagatctgt ctccatccag ctaaccctga gaaaactttt agccacctgt ttgcttttac
      421 atgcaact
//
LOCUS       KCOD01000813             661 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 90483pyr ultra-conserved element locus
            uce-4986, sequence.
ACCESSION   KCOD01000813
VERSION     KCOD01000813.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 661)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 661)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..661
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="90483pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>661
                     /note="ultra-conserved element locus uce-4986"
BASE COUNT          182 a          149 c          137 g          193 t
ORIGIN      
        1 catccaacct ggccttgaac acttccaggg atgttccctc tcattataga aggaggattt
       61 ttgccattgc ctcggagcaa ctgtgctctt tcttccaaga ctcacaccag ggctgcctct
      121 ctgcatgtgt ggtctcttgg actgcgagct cataaataaa taaggagaaa agttcttaat
      181 cttcattcga aagctcctgg tatcacaatg ctgctgcaca aaagccatct tattagcccc
      241 aagtgcaaaa tgctgccttt tcttgcagaa gctcattaat tgcaggtcac cattcaacaa
      301 gaaagatgag gcacttgagt tcttcaggct ctcattagcc accgagctga acagtatgtg
      361 tgaaattaac agtcacctga gtacctctat aatttcataa ttattaggcc taatgggtta
      421 gtctctgcca aatggtttta actccttcct agccggagct cacatgagat gccaaggctg
      481 gcgcaaacca tttaacagct taataataat aaggagagga agtttccagg atcatgtact
      541 gtttgcattt tttaacatat gtttagcttt taattattca tatccagcgc gccgaggaag
      601 cagatagcct gtatcccgga gagtgggtga aagagctttc tctgcaaagg gattttaatt
      661 g
//
LOCUS       KCOD01000814             415 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 90587pyr ultra-conserved element locus
            uce-694, sequence.
ACCESSION   KCOD01000814
VERSION     KCOD01000814.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 415)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 415)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..415
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="90587pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>415
                     /note="ultra-conserved element locus uce-694"
BASE COUNT          138 a           61 c           83 g          133 t
ORIGIN      
        1 gggcgcatga tttctttcat ctcaactaat tagagcttgg tatgcttatt aaaaaagaaa
       61 gtattaaaat acaaaatcat attaccctgg tatcaagaag cagaatatta caatattcaa
      121 atgctaatca tataacttag cagatgattg cagaaagtag tgtatttgaa ctgagacata
      181 aattataaat tgtaaacagt gcatagggga tatgttataa ctgtctctca tttaaattaa
      241 ggcaggaagt tttctctgaa gcagattatg tgccttcatt aagttttaaa gtatcttcta
      301 taatgtttta ttaagatcgc ttggcacagt gtttcccaaa ctggatgtta gcaatatgta
      361 ctggtggaaa tggccgcagt ggtagaggtg gctcaggtgc attgctgcac agcac
//
LOCUS       KCOD01000815             627 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 90801pyr ultra-conserved element locus
            uce-5923, sequence.
ACCESSION   KCOD01000815
VERSION     KCOD01000815.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 627)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 627)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..627
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="90801pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>627
                     /note="ultra-conserved element locus uce-5923"
BASE COUNT          196 a          111 c          104 g          216 t
ORIGIN      
        1 tagtgtggaa attctactct cgtcttccaa ttctctcctt acttgactag atttttttaa
       61 ctgacagtcc cttcaacaat aaattatgaa aactttaata aagaggaaag ctatttagat
      121 attgaaatgt ataaatctcg ctcatctgac atccattgtc tcactgacat caggtttgct
      181 tgtttggaat ttcatatttc caaacagaag agaatgtaag aattctaatt caaagcatca
      241 atcacagaaa atgaacataa cctaacgtca ctgctgaatc aggccatcaa tttattgctt
      301 tgtaaaagca atcagcaagc tatcaagcaa taaagtgtat gggaaaagtg ctccttttga
      361 gatagcacag ccattgacaa tgatatactg atggagaata gcaactattt tacagcatag
      421 tgtgcctatt acttgttaaa agctctgaac cattcaacag atgtgaaata tgtttcttat
      481 tattatggat caatccagtt tgtttaatag ccttgtatgc cacttagatt cgctgtctta
      541 tttaatgagg ttatatttgc gctctctggc tcttttgttc tggttgagat atgacttttt
      601 cacttggttt tccaaggaac agtgaat
//
LOCUS       KCOD01000816            1397 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 90909pyr ultra-conserved element locus
            uce-1250, sequence.
ACCESSION   KCOD01000816
VERSION     KCOD01000816.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 1397)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1397)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1397
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="90909pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1397
                     /note="ultra-conserved element locus uce-1250"
BASE COUNT          468 a          230 c          250 g          449 t
ORIGIN      
        1 gataaaacat gaaaaagtga gtgtgctaaa aactatgggt cattgctctt aatataactg
       61 gtccagagat gaaaataaat gttgttttga atgcctgtag catgatgaaa aatcattttg
      121 agaatcaaaa gaaagtgatg tcatacaaga aaactgtttg aacagataag aagcaagtgc
      181 ttatgccaac atctctgttt gttgctgagg tctctctgct ttagagtatt aaatggcaaa
      241 gcatggcagg atagctccaa tcaaacagcc cagagtcaac ttcaaacttt aagtgacata
      301 gaattgtgac ctttcactaa taaggtatac taaatgaact tagagagctg agtgtttctg
      361 tgaggctgtg gaaaacagat atgagcgggt ttagttcctt tactaaagtt ctgaagttaa
      421 tccctgctat acagtataat ttaatgtttt ctgcctacaa caaaaatagc agctgtcccc
      481 ctatttgaaa tagcattcgc atgatcacta catattcata ttcctatgca tacgttatca
      541 cttaaaaggc tttctaatta caacaacaag acaaaaactt cttggattct ttccagactc
      601 actaaatgat aaaataagct tgtactctct ccttcttaat ctccgtaaag caccttggag
      661 cctcatctcc gaaatacatg cgaatgaatg tgaaaatgcc atttagagat gcaggtgtga
      721 catttgataa gaaacttctg gattaaatat gttctgctaa tgaggatccc agctaccccc
      781 atcagggcta actattggtt ggattgtgtg tgagctgata acattccaca tgcgaacatt
      841 caaattcatt attaataaac agcccaagtc tctatcagaa aagtctggat cctttagcaa
      901 gtgagggatg ttgcttctca ttaggagaag acatcaaatc ttccagaatt tagcaatttc
      961 atttttggaa ccaatttcta acagtgtatt aatggtgcat tgaaaatctg aacaaagcct
     1021 tcatactttt tattcatttt gtaaattaca gtaatctagg aaggtttgac taagctactg
     1081 gagcaatggg cggtaaagac attgtactga agcattgcag ttctaatgat ttttttatga
     1141 ttaaacgttt atgaggaaaa aattcatcct tggagaggaa aattaacttt cagcttgtat
     1201 gttcattatc tttgatacca aagtgaaatg tggtttcttg ttttttttta aacttgcaga
     1261 tgttaaagga aatgttaaaa tgaagatatg tgtcagctaa tgttttaacc aaataaaaag
     1321 cttttaattt gccatttcat agttaatatt acaaattgcc agacatgtca tagtacagtt
     1381 tctatattac aaagtaa
//
LOCUS       KCOD01000817             751 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 91022pyr ultra-conserved element locus
            uce-2112, sequence.
ACCESSION   KCOD01000817
VERSION     KCOD01000817.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 751)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 751)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..751
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="91022pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>751
                     /note="ultra-conserved element locus uce-2112"
BASE COUNT          219 a          125 c          166 g          241 t
ORIGIN      
        1 taaagtaaaa gttacaagtg ggtggtgaaa ggccttttgg attaggtctt tctgattcta
       61 agaaaagcag tgactcaaat ttaataaaag tactatagct aaaatatttt aatcttattt
      121 tagctttctg gcatgtaata tttatatata gttgtagcag ttaaactcat tttaatggat
      181 gaatttttat gtaaaagtga tgttctgtgc tgcaagcagc aggtgtgttt ttaatcttta
      241 ataggtcacc ttcctcagtg caagcaggca agctgttatt gatcaaagag gttttgttgg
      301 gtagctctca gattattgag tgacaaactt tattggattt gacttaacgg aagtcagaag
      361 acagctgaag cataagagct tgcactacca tcagagtcat tttacgacag ccagggagca
      421 aagctcagag atggatactg agctctttgc tggcccttgg agattaactg aacagccttc
      481 ctaccaattc ccaagcctgt cagcagaacc aattagattt tcaaccagta gacaagaagg
      541 gtggcacttg gggacctttt tgctttaggt caaaggcttt tcagactgca atgagatgac
      601 attgatgatg acacgttgag cattggttgg ttttaagaca agttaaatta gcagtcttga
      661 aatgattcca actgtctcct gacttctcac tgttgccata ttcagtggat cctgtcagga
      721 gcaggttgat gacttaatag tctttcttga g
//
LOCUS       KCOD01000818             621 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 91133pyr ultra-conserved element locus
            uce-6821, sequence.
ACCESSION   KCOD01000818
VERSION     KCOD01000818.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 621)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 621)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..621
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="91133pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>621
                     /note="ultra-conserved element locus uce-6821"
BASE COUNT          134 a          171 c          169 g          147 t
ORIGIN      
        1 gagcatacag ctagggaata ggataccaga gaagcacaga ggaagaaacc aggcaatcac
       61 caggtaaact cagccttact ttgatttatt tcctttcacc tcgcctgcaa gccctcgccc
      121 gaagggagca ggagagcaga attaaatgcc tactcctctc gttcgcttcc tcaggatggg
      181 aaggttcagc gtccactgga tatgggacaa gatcactcgg caacccttgt ggattctcct
      241 tcttctagag gcgaattata gttatggatt tattgtcccg gtgcagcact tccaccaaca
      301 gcagcagctt tctgactctc ttcggtgacg ggtattcttg ggtggataat acggattacg
      361 ttgttattgc ttaagaatac gcgtagtcga ggagagtacc ggcggcgggc aggcaggcag
      421 gcagcgcgac cgcccccagc ccaccagctg gctcctcacc tcctctagtt gccaaggtag
      481 caccttttcc atcttttcct acgctttgca atgtttcatc tgtgtctctg cccgggcggg
      541 gggctcgaac gccctgtctc ttgtggatgc gtgggagcaa gccagctggg gagggccgcg
      601 gcaaggctgg ccaagctcct c
//
LOCUS       KCOD01000819             840 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 91245pyr ultra-conserved element locus
            uce-734, sequence.
ACCESSION   KCOD01000819
VERSION     KCOD01000819.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 840)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 840)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..840
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="91245pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>840
                     /note="ultra-conserved element locus uce-734"
BASE COUNT          252 a          146 c          203 g          239 t
ORIGIN      
        1 tgaaaatctt tcactggaac tgcaaggatt taaaaaaata aattatgact gaccagaata
       61 gaaacagtat ccacagttgc aaaagccatg ctcatgtaac agacattatt taagccattt
      121 atgtgaaatg tatgggtacc gtatgtttag tggcattgtt aaaacagggt gtctgtacaa
      181 atatttagct gtgggaatta taaaatcata aggcgattaa gttagctagt tgtgaaattc
      241 caatattgct ttttaaatga cttcaggata taggaggtgc taaggttatt atctgttatc
      301 aggaatacag cggaattgta cgactggata ataactaaac aactgacaca atgtaaaatt
      361 acattatcag tgtgttaaaa caaaattgcg ccctaaagga gtctacatgc cagctcagag
      421 ctgcagtgta attatgctta actctgataa ttaaaataca acggagatca acagaatcat
      481 tttcattaag aaaattatta atgatggtgg tataacagta attgattgca gagcaccaca
      541 ggataactct gtgcaggaaa gccaacatgt gtaacgtgcc ggtcgcgttg cgtcgcgtcc
      601 cactgagcat gctgccggcc aggtggcagc cagggggcac gtgctgcaaa tcctaattta
      661 gactgctttg caggctgccc cttggaggga cagggatggg tgctggtgca cgggatgatg
      721 ggatggggtc gggtatggct gccggtggct gcaggcagtg acttgcacac ttcttaagcc
      781 agccatcatc tcggtttgtg tgtggttttg catttccatt agtgatttac tgatgttatt
//
LOCUS       KCOD01000820             598 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 91354pyr ultra-conserved element locus
            uce-3582, sequence.
ACCESSION   KCOD01000820
VERSION     KCOD01000820.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 598)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 598)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..598
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="91354pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>598
                     /note="ultra-conserved element locus uce-3582"
BASE COUNT          178 a          117 c          128 g          175 t
ORIGIN      
        1 cagctccttg cacaaagact gaaacacgat gggcagagaa gggtgttggt gtcggtaaga
       61 gaaaaatgat tgaagttgca tcatctgtat gattaaaatc attgtgtgaa ttttgatttt
      121 ctactttcag acatttgagg atgcagtcaa gtcaatggaa ttctgttgta gtggttgctt
      181 cagtgaacat tcaacgctgt cggtgagttt ggaattaaag tgaaaaccat cgaccgttga
      241 ttgtaccctc cagctaacca tcctcctcct tacttcatgc tttcaggcct taacaccgaa
      301 gatagcaacc taaccatcat atgatgtttc tcccccaccc tgccaagctt taaaaaggtc
      361 acaatcaaca ttcattgctg tcggtgggtt taactatgtg gacaagctca ctgaacaatg
      421 aatgcaactg tggccccaca ttgtacagtt gccgttgaga ggagaatagt gagaagcaaa
      481 ctacaatttt ctgggaaaaa tagtttttga gcgtgtttta tttagctgac tttgtcttcc
      541 cattgaaatg tgaaaacagg acaggacaga ggaaagaata ttttgccatt ttaaccaa
//
LOCUS       KCOD01000821             827 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 91462pyr ultra-conserved element locus
            uce-4978, sequence.
ACCESSION   KCOD01000821
VERSION     KCOD01000821.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 827)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 827)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..827
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="91462pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>827
                     /note="ultra-conserved element locus uce-4978"
BASE COUNT          223 a          161 c          203 g          240 t
ORIGIN      
        1 taacagttca tcgcaccagt gcaacacact aatgtttaat acaacttgca tgtgactttg
       61 tattggctgt gttgagtttt aactttccaa aaccttcaag tgcattttgc tgcttcttga
      121 aaccactttc aaatgagctc tggcccggca acatttgcag gagtgcaaat ttgagaacag
      181 aaggggccaa aatctaatgc tcaggaggca gggcttccta aattgttctg caggcactaa
      241 tccatcctga agtgcatttc tcattaaagc tgaactgggg aagtagcgtg tggtgttcca
      301 cccagggggt tctgatgcat tccttttgaa taaatttatt gctgggtaat ttctatgtga
      361 caggagtata tcaggcgaca gctagaagag gagcagcggc acttggaaat tctacagcag
      421 cagctgctcc aggagcaggc catgttactg gtaaagcact gtatctgttt tgttcagtag
      481 ctataggatc catttatcca gccagtccta ggcttccctc agtcgggcac agctgcactg
      541 acagtatgac aacaaaggag cttgattaaa aggccatttt tgctagtgtt gtgggctgac
      601 aggcacatat gagaagtgct gtatggtcac actgctttct gggcaataag aggaggcttt
      661 atgttaatgg aacagttctg gtgtggtggt caagtttctg aacagacctt ggcattcagt
      721 gaagaactag agtgcttgtg ttgcagatca aaagcacaca tgatatgtaa aggatacaat
      781 ggcctagtgt tggtctaaat cattgtttta tgaactttac actggat
//
LOCUS       KCOD01000822             683 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 91568pyr ultra-conserved element locus
            uce-4910, sequence.
ACCESSION   KCOD01000822
VERSION     KCOD01000822.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 683)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 683)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="91568pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>683
                     /note="ultra-conserved element locus uce-4910"
BASE COUNT          215 a          124 c          122 g          222 t
ORIGIN      
        1 agtagtttct gataacacaa ccctaaagaa acagaaaata catttctttt gatggtctga
       61 caatgacaac atgtagctct ggatccctgc atgctctatt gatatgaccc ataaaaggcc
      121 catggttcca tctcttgttt gtattcttca ttttattatc attctctctc taaggtcagc
      181 agtgctggtc tcccagagac cattagcatg cttttgctta tttaattcac taactgctga
      241 agtgcatgct gcttttagtg gcactcatac aactccaagc actgaaaggt ttggtttcat
      301 gtacttgaac tcaagtgaca caaatatttc agtggtgaat caatactggg aaaggatggt
      361 cagtaaggta gggagtgttt atagaagatg tttcatcact actagtaaaa catgtcttat
      421 tgttagttca ggaggtgctg gtatttagct ctttgaagga ggcttctgac aagccaacaa
      481 ctctcagcct gctagtaaaa caaaatttaa aaaattgcac aagcttagaa atgtaaaaat
      541 gtgtgcagat taactattta ggaattctga tttccataaa aagagacaaa ttctgcagca
      601 ctaattatat gtaaatgttg aacaaaaagt acatttgtct atttcatttg acctgattaa
      661 taaatgaata cttactcttt ccc
//
LOCUS       KCOD01000823             537 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 91674pyr ultra-conserved element locus
            uce-4222, sequence.
ACCESSION   KCOD01000823
VERSION     KCOD01000823.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 537)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="91674pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>537
                     /note="ultra-conserved element locus uce-4222"
BASE COUNT          178 a          116 c           82 g          161 t
ORIGIN      
        1 ttccgtacag aaatgacatt caatctacct actgaattga acgtcttcag actgtactgc
       61 aatgtaccat atgtaaaagc cagtaaggtc acaataattg aatctaaata agttgctgct
      121 gagggcaaag aaaaacttgt tctctctttc aacctttgta ttaattttcc ctcaattcaa
      181 ttccatctaa gtctggtgca ctctagtttt acaattcaat tggcattttt aaccaggaag
      241 aacattgctt aaaaacaact tatttgaaaa actacaaaaa gtaattccat agagacttgc
      301 cacttgactg acacctgtca tctcatgata aatgactcca ttttctgcct ctcttgcctt
      361 ctgccacttc ggcaatggtc atttatcatc atctctgtca gcaatggaaa gcagcactga
      421 cagtgcaagt cagcaaacat ttagcacatg gaaccacgca acacagggaa attattattg
      481 tcagaataat aatggtttag cataatttat tacaggtcca ccaaataagc aaaggct
//
LOCUS       KCOD01000824             710 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 91785pyr ultra-conserved element locus
            uce-5849, sequence.
ACCESSION   KCOD01000824
VERSION     KCOD01000824.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 710)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 710)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..710
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="91785pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>710
                     /note="ultra-conserved element locus uce-5849"
BASE COUNT          238 a          135 c          109 g          228 t
ORIGIN      
        1 gcttctttgg gagtggcagc tgtaaactat taaatgttta ttaataacta ctagcagtaa
       61 tgacaaacac aactacaatt tcattagcaa tagagggact gtaacattcc cgtcacttcc
      121 tcaagaaacc attagcaatt cttttcatgt cttctggtac ttttcttgca aggatgcttc
      181 ttataatgta cagctaattt tgacaaattt acgtaattga aggagaggat gatggatttg
      241 aaactctgat cagcagctgg cagctgtgca gaaaaaagct gcttctcttc atcaatgtca
      301 aagccagaac tgatgaacaa aatttgccct tgacaattag aagacaccca tgaatttctt
      361 tagactgctg ggtacagttt tcttaaaaat gttcttgtca gactccaaca cactacctga
      421 cagcttaatt aactggcttt caaccgcaat ctcagatatt taaaacttat taaacttaca
      481 ttccatattg atgtctggct gatagatctc tgaattgcac agctgatatg tgccttttcc
      541 cttgaaaagc catgaccaat acaatatgta tttaacactg atacatattt taacttttac
      601 tatttaattc atacacaata caatagatat taaaaggcta atactgaaat gaccaataga
      661 taaagatgat agatttcctt gttcttgacc aaaaagataa tatttgacca
//
LOCUS       KCOD01000825             505 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 91893pyr ultra-conserved element locus
            uce-5103, sequence.
ACCESSION   KCOD01000825
VERSION     KCOD01000825.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 505)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 505)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="91893pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>505
                     /note="ultra-conserved element locus uce-5103"
BASE COUNT          150 a          109 c           87 g          159 t
ORIGIN      
        1 tgaattgaag cctgctttta ataggaaatg tatcaattca agactaagag caaattttcc
       61 acctaaggag gatattatgc cctcctacac atgaaatata tctccataac tattgccatg
      121 cttgcaggca ctcctaagct atggatctgc cctggttaga ttactttcaa caggattact
      181 gcaccccctt aaccaaatgc tttatgtctt tgttcatatg gttttaatat ggttttaacc
      241 aattgcaagg ttatttataa gtttgcaact ccccagtagt tagagttatg aagcgttcag
      301 acttaagcat atccagttgt gtggtaaccc aactactgct ttcatgcggt ttccaacttt
      361 ttattcatgt acaaaggcat gatgcatggc agtatctgag acctttctca ctaactcttt
      421 gtttcagctg cgcagcagcc tacagtaaaa ttacacatgg acaaagatta aaacatgcag
      481 actgtgaaat tccaccacag actga
//
LOCUS       KCOD01000826             504 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 92001pyr ultra-conserved element locus
            uce-1188, sequence.
ACCESSION   KCOD01000826
VERSION     KCOD01000826.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 504)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 504)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..504
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="92001pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>504
                     /note="ultra-conserved element locus uce-1188"
BASE COUNT          161 a           69 c          120 g          154 t
ORIGIN      
        1 tttccttgcc aactcattcc tgacaatgtt aatgattcac tataaagcag cttctgtgct
       61 atgatttgtg acattcaggc tggttagatg ggaggactag gcaggtttct ggggagtgtt
      121 ttggatgcag aaatgccttg aagatagcac tttattatat ttaggacaag tatgacatcc
      181 cacttcaagg aataggcccc tatacatatt gagaagggat ttctgtggtt taagtgggga
      241 ggagaaggtt agtttaaaag aatgcctctg tgttttctga ggcaacataa agataggagg
      301 tagagaaatg gaggcaggag gcagaaggat tatggataat ggaagaattt tgcctgaggg
      361 tatgtgcctg ctttgcctat tcctgtataa ctagaatatt tataattcaa atacttatct
      421 ttaataatta aaaatgaagg aatattaaag acaaaaggta gagaatatta tgtacacata
      481 tgtaggcatc atgcattaaa tccc
//
LOCUS       KCOD01000827             579 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 92108pyr ultra-conserved element locus
            uce-1796, sequence.
ACCESSION   KCOD01000827
VERSION     KCOD01000827.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 579)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 579)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..579
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="92108pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>579
                     /note="ultra-conserved element locus uce-1796"
BASE COUNT          170 a          105 c          106 g          198 t
ORIGIN      
        1 ttaattgtct gcagatttat atgaagcaca ttagtaaaca tggagatatt agtatttcag
       61 aattcaaaaa aagcccagct gtgctggtga ctaaccaata catgaactga agctcacact
      121 ctgcaaggac ctttggttga cattcgattt tgaacctgcc agatgcattt ttgtgaacca
      181 gggatactgc atctttaatg aacaagtctc tactctttcc cctgttttta aatacaacac
      241 aagcagtgta gcactaggca ctgcaattgt caaagacaat tagactgaaa gcaggaaaat
      301 ttcacctccc tgtctcagtg atatgtagaa tgtcggcagt atgggtcagc cttgccacag
      361 agttgtgtga gaatatatga atcagtccta tagaatgtta aatatttata aaatggttct
      421 gtactacacc aaggttggga gcacattcat tccttcttgt tgttttataa tagcaaaagt
      481 ttatttccaa acctaaactt tgtgtggttc atttttcttt tttttctctt gtggtttata
      541 tgcggttgct agaggctttt catttccttt ttaaaaata
//
LOCUS       KCOD01000828             615 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 92216pyr ultra-conserved element locus
            uce-2868, sequence.
ACCESSION   KCOD01000828
VERSION     KCOD01000828.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 615)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 615)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="92216pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>615
                     /note="ultra-conserved element locus uce-2868"
BASE COUNT          204 a           98 c          121 g          192 t
ORIGIN      
        1 tgtgatgtga ggcattagta atttagcaat taatcattat gataaaggta atttattagt
       61 cagtcatcat gaaaaattaa aacaggcttg tcaacttaca attaatattt tgaattttag
      121 atttttgcta tttcccaact gactagaaat ataaaacatg aaacagatta gttgatgatt
      181 gctctatttc attttgattg ggtaagagta agtgatagga ttgaagtcct tgctaccgag
      241 agccccacca gtagagaagc attaggatga aaaaagattt tcactcactg ggtggtctgt
      301 tcgctgccaa gtttttgaag tggctgcctt ttatcacttc tgctgataat cttccagttg
      361 tagcattata aaggaggcca atgaggattt ctggagctga gccatgtacc agagactgac
      421 aagaggaggt actttcactg caggacactt ctgacatgct catttgagag tcacaaccct
      481 ataaaacaga taaaaagttc tgtgtgtctg ggaaatcgat ttttagaata atgcatagaa
      541 aattctgaaa gcaacttagt gacaataaca gaagttctat tcaatcaccc aataagaaat
      601 gtaccttaat ttgca
//
LOCUS       KCOD01000829             506 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 92324pyr ultra-conserved element locus
            uce-6457, sequence.
ACCESSION   KCOD01000829
VERSION     KCOD01000829.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 506)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 506)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..506
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="92324pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>506
                     /note="ultra-conserved element locus uce-6457"
BASE COUNT          185 a           74 c           84 g          163 t
ORIGIN      
        1 aaggtgttat atattgtcat ggtaattata attgggttat atgtatccaa ggtacagaac
       61 ccatacaagg tgatggctta aaagagggtc ttataaatga gactgtaggg catttaacta
      121 aacaattgca tgcagaataa agagcttaca taaaagtgtg tattatgcag atcttagaaa
      181 cctgtgtctc tgagaagaca ctgttttgac cataatgcat tctgtcatgt gagataaaat
      241 gcagagaaca tttacatttc tcccactcac tgagcttcta tcacacggct tgcatttttc
      301 tcacatcaat gggcatcttt ttaaacatta tattcatgtc tgtctctctt gatggcaaat
      361 aaaattcaat aaataaaatg ctttatgata aatatgttag atttaagaag cagttgtgat
      421 aaaatgctca caaaaaagat ttgttaaaaa caaataaatt taacaagact tgtacacaag
      481 ctcaaaatat attaatatat tgtaga
//
LOCUS       KCOD01000830             540 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 92434pyr ultra-conserved element locus
            uce-5133, sequence.
ACCESSION   KCOD01000830
VERSION     KCOD01000830.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 540)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 540)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..540
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="92434pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>540
                     /note="ultra-conserved element locus uce-5133"
BASE COUNT          179 a          112 c          110 g          139 t
ORIGIN      
        1 tttgtagaag caaaacaatt tagaactatg aattgattag tgaaagtaat agtacagcta
       61 cagtactttc ctctccccat gggttttcag ttttaaaggg gaaaaattca aaaccaagac
      121 tgactgagac ttgcagctca ttaaagctgg ggtgatttcc actatacaga attctattga
      181 tctccatagt ccacagtaga caaaaaagtg tggtcaggga ggggatgatg gatgcctctg
      241 ccaatagcac tgaacaaacc tgttagctaa ttgctaccaa agacaattat ccccgcattg
      301 tttcataatg gaaacacatt acaaaactct aatatacaca cagggaaatt tgatgatttg
      361 actgtggagc catgtgcatt gaatctcatt gccaaaggcc agccaggtcg ctgctgtgag
      421 gggaagaaag tgtcagaata gaagcctgag tatctcacag ctcattctgt aaaacgagtt
      481 tagcaactcc taaaaacact gtaattcccc tgccacaccc atgtgcaaca caaggcatgt
//
LOCUS       KCOD01000831             803 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 92545pyr ultra-conserved element locus
            uce-3078, sequence.
ACCESSION   KCOD01000831
VERSION     KCOD01000831.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 803)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 803)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..803
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="92545pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>803
                     /note="ultra-conserved element locus uce-3078"
BASE COUNT          267 a          156 c          135 g          245 t
ORIGIN      
        1 gcaaggccat gataatcata attatttgaa gttgatattt gattaacact ggcagtactc
       61 tataagtgat ttccactaga caacatctaa ttatttaatt atttcccatt attaatggaa
      121 tgaaacaact caaaacaaac agctagaatg actgttttgc aggaagccca tgaacatcaa
      181 ttcatacatg tagaaatctt actaaaatta tatcaagctg gcccgttgaa cttgaaaggc
      241 atattttatc tcaatcaatg caaaaattat ctataactaa ggcatgtttc tctgctgtac
      301 agttcagctg taatgatccc cacacactgc acttgcacat caattatgat aatcataatc
      361 acggtcgtta agctgaatgt tcattattat caggatgctg gtgacagcag attcaatcat
      421 cgggtgcaat gggcaggcag tcacagtccc acccaagttt ctgcagacag cgttgtgcca
      481 cattaaatct acgatgtgtt ccacatccca ctccattcca aaagctgtag acggtaaagg
      541 tcaactttat gttctgtgca atatgcttag gttctctaaa ttgattcttt gcagtcctgg
      601 gtagttgtag ataataaaat cctgtttagg gccaaaatgc ctgtgcaaat aatgaaaccg
      661 tgattcagct gtacagtaat tcacctataa taaggcatca gagggaagaa tctatcagct
      721 atcacttcct gaattttaca aataagaaaa cattaaatgt tgtcattaaa gtcagttttc
      781 taaaatgcat atgcaaacta att
//
LOCUS       KCOD01000832             765 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 92655pyr ultra-conserved element locus
            uce-2714, sequence.
ACCESSION   KCOD01000832
VERSION     KCOD01000832.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 765)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 765)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..765
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="92655pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>765
                     /note="ultra-conserved element locus uce-2714"
BASE COUNT          225 a          136 c          147 g          257 t
ORIGIN      
        1 tgtgtctggg taactaaatg ttttctttga cttcaggttt tgaaatattg ggtgtatctt
       61 tcttatttac agttctcctg tccatctata agcttttgac aagagctgat acaactgtgg
      121 tataaggtga taaatggaag gcaagtaaag gagtaattaa tcaaaccaca taagaaaaca
      181 ggaataaaaa atgatgcaga aactgacaag agaagtctaa actccttgtg ctttggcacc
      241 aatgaaaatg gaccagagaa aaagttcatg aatgtgttcc aattaatctg tatgcgcact
      301 gcaatgctct ttagtttggt tcatttaaat ctgaaattcc cttccctgtt gatgtcagct
      361 agttagccaa gatggtgcat tactgttatg atcacttcag cgcatataat ttagatttat
      421 ctctttaggg actcagctcc accccctgct agctaatatg ctcaccatgt ttaatgatgc
      481 aaaaaatttc cctgagtaca ggttatttat ctttatcagg ggctgctttt ggctggctgt
      541 cagttatctg ccagaatatt tgttcctaaa tggtttgtac tcatccatat tccagggcaa
      601 ttctgaggcc catattatca ctgatgtttg caataaaagt gtttcagttc ttcagataca
      661 ccttagtaat actgatttat gagtctggac tggctgtatt tctgatgtgg tgatatgaac
      721 cctgaaatat ctataactgt catggaagtg aaatatctat ccaaa
//
LOCUS       KCOD01000833             597 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 92765pyr ultra-conserved element locus
            uce-1181, sequence.
ACCESSION   KCOD01000833
VERSION     KCOD01000833.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 597)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 597)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..597
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="92765pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>597
                     /note="ultra-conserved element locus uce-1181"
BASE COUNT          202 a           90 c          139 g          166 t
ORIGIN      
        1 attttatggc tgcgctgcag cagcggaatg tccactcaat ctgttgagaa gttacacagc
       61 aaacatgcgc cgggcatatt aaacgcgggc ggaacggcgc agtgaatatt tattagcgaa
      121 aatataggtt ctcaaaaaca gaaataaaac agggtaatgg atgaagggga gaatagattt
      181 aacactgaaa taaatatcaa aggtgcaaag caaaatatag tgttcaaaca aagctgcgaa
      241 ttgggcccag atttaatgcg tcccccggga tgaaaaggtt ggacagactg ttggaattga
      301 gatactactt ttagtacaca gcccctgtaa tgctgtcagc tttatttcct ttgacaaatg
      361 tgaaataaaa tttgtcaaag ttagggcttg gtaagtttgc tattgaaaat tcaattggta
      421 ataactagta gagcctggca ctcaggacat ttttaaagga aaggaatgtt taagatgctg
      481 ggagaaaaag tatactacag attgcagttt taaaaattta acagctgact taggcaaaga
      541 gattcctctg tttattatta gttgtgatca agagcagaga tgccattttt tggtgtt
//
LOCUS       KCOD01000834             524 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 92983pyr ultra-conserved element locus
            uce-2716, sequence.
ACCESSION   KCOD01000834
VERSION     KCOD01000834.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 524)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 524)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..524
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="92983pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>524
                     /note="ultra-conserved element locus uce-2716"
BASE COUNT          160 a           96 c          110 g          158 t
ORIGIN      
        1 gggtgggaac ttgtccaacc cagctgatga caagaaatgg gtcagacgct ttaccactgc
       61 aacttagttt gtgtttttat ttattaggga atggaacagc ttttacaggg acaaagagaa
      121 atgaaatcac tttcagtgaa agaaagaggc ctcattatag tcaccaacag cagttattga
      181 cagctacact tcctattaac aaggagcatt taagagtttg gctgttggat ctttggactt
      241 gatctaattt gctagcatta attagtttct tttgagcaca gacacttggt gctcacagct
      301 atagatttag aggactaatt aggacagaaa attgaacaga atggggtaag gcattaacct
      361 tcaaccatta ccagctgggg ctctgataaa gaccacagag tccaaatgct cctattcatg
      421 caaagagtac tctaatgaat atcaatttca gccaggttgc catatcttac aagccttgtc
      481 ttgattttga ttctcttacc tggcggagat ttttatgtat agat
//
LOCUS       KCOD01000835             719 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 93087pyr ultra-conserved element locus
            uce-5961, sequence.
ACCESSION   KCOD01000835
VERSION     KCOD01000835.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 719)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 719)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..719
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="93087pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>719
                     /note="ultra-conserved element locus uce-5961"
BASE COUNT          217 a          116 c          134 g          252 t
ORIGIN      
        1 tttaattgaa taaatatatt acgcagcagg gcagattatt ttctttgtgg ccttgctgtt
       61 gcagtttgag aacagatatg atttccttca gctgatgaag aaagcaacat ctgttcttgg
      121 tttcctgcag ctttccttca gacaatgcat ttagatgcac aatttgaatt ccttcctaag
      181 aaattgaaaa ttaaaacttt gaccccttct tcaaagcggt ggttacactg tgacaacagt
      241 gggttgagct aaattcagct atgtcaggca agaactataa aagtagatag attgccctct
      301 aagcttcact ttattggata ttgtaattga catatagttg tcatttataa tcatctgtcc
      361 attcctgtga gttgggagca gtaaagttaa ttgtggctgc tcatttgcat taatctcacc
      421 tctgaagggt acagtaaccc attaatatca tgtcatgatg aattatcaca aataacatcg
      481 aacatattga ttaatgatct ctgagatttg tatctcgtta aaacattttg ttagctcttt
      541 aaacttttaa gcagacagtc aatgtatgtg ggggaggttt agagatcacc cacgaggtga
      601 tgaaaagtta tggcacacat tttgggtcac taattaaaaa ttgctttttt atattaattt
      661 taagaatgct ttttctttct aaaggtatag agcctgaagg ctaagaattg tcttattat
//
LOCUS       KCOD01000836             698 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 93192pyr ultra-conserved element locus
            uce-733, sequence.
ACCESSION   KCOD01000836
VERSION     KCOD01000836.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 698)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 698)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..698
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="93192pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>698
                     /note="ultra-conserved element locus uce-733"
BASE COUNT          221 a          110 c          124 g          243 t
ORIGIN      
        1 agcagctctg gtgtccctct gtaacaccag tagggaatag tgatcctctg gcttggtgtc
       61 gaggaagggc ataagaaagc tcaggggttt gtttgtgaaa gtgtgcagtt tggaattttc
      121 tttccataat tgttagccat aatgtgtata agacctccac cttgatatga ttcctagcag
      181 attagggata ttagataatt tccttctatt tattgtacta ctgcactgta ttatctttct
      241 atcactcaga taattactaa ggaaatctac attaattttt tttggctagc acaaggaact
      301 gttaacactg gcatgatgta ttgatgtttt acacaacaaa agttttcctc ctgtcattgt
      361 acaataaata aaaagatatt tatcaaaatg caaagccttt catggttttt aaagaacaaa
      421 gcaaataaaa tacaagatga gcatggaagc aaaacctaga ggcttcctta actgaacaaa
      481 attaaggact ctgaagcctc gagtactgta catattaaac actcacattc aagtaagatg
      541 ttgtttgcta aattatgaat gtgtgtaatt aaaatctagt ggctgtttct atgaaagatt
      601 tacaatgtta tttcatcgtt tgtcatggct aattaacaat attagatgaa gtttttcttc
      661 ttcaaaggtc tgattttttc tcatttattt atgtcaga
//
LOCUS       KCOD01000837             688 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 93299pyr ultra-conserved element locus
            uce-649, sequence.
ACCESSION   KCOD01000837
VERSION     KCOD01000837.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 688)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="93299pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>688
                     /note="ultra-conserved element locus uce-649"
BASE COUNT          197 a          168 c          111 g          212 t
ORIGIN      
        1 ggccatgtga tgcacaggga ttctgaaatg cttcctctca ttcacagttc tcctactaat
       61 atcctgggca ttattagtag ttcacaaagc cagcacattt tctttttgat aagtgtccct
      121 gttctgccct cctttgtcca cctccaaatg cctcctagta cttacaaaga ataaagccct
      181 gctgcctaac tagcctggtg ctttggattg ctacccctac tcactcagat gcctgtaagg
      241 ggatgtactt atatcatgaa agataaatcc cagctagaaa tacaggtccc tgacaaccta
      301 atcactgaaa ccctgtcaag taacccctaa ttttaaagca agtggttaat tcccagcaaa
      361 ttgatttatg cactgtttga ggtttggtga gttgtgttgt tcatctgtta ttaccacgaa
      421 ctcagctcag cctattcatt tagaccactg acacaacaca gtgcatctcc caagaaaatt
      481 tcctttgtca gcacatctag aatttgctaa ttaaatcaac gatgacatta ttcactttct
      541 gaaaaaagca acttctctct cctgccttaa tacacatgtg tgtgcataaa catgacaccc
      601 aagcatggcc gtaaatgtac acaaaacttt gaattatctt tattaactgt tttagtcagt
      661 gtagatcatc tggccatctc agtagaca
//
LOCUS       KCOD01000838             740 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 93408pyr ultra-conserved element locus
            uce-2418, sequence.
ACCESSION   KCOD01000838
VERSION     KCOD01000838.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 740)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 740)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..740
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="93408pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>740
                     /note="ultra-conserved element locus uce-2418"
BASE COUNT          216 a          151 c          124 g          249 t
ORIGIN      
        1 gattattgtt cttgacattt ttctggaaaa agaagaaaac ttccttgttg ctgttccaga
       61 cacagcatcc ttactatcta ctgataccct ttctgaggtt aatctattgt aaaattagat
      121 tgtaaaaatg gacacagttt ccacatttat attccagcac tgaaggactc gtggaataat
      181 tcaaacactg cacaattcct tttgcagaaa tcactgcaaa attcatttgg taaaccatgg
      241 aaattagcat ggattcttcc tcagttcaat tcatctttca gaggttgcta cccttcccaa
      301 tctgattgcc ttaagaacac agattgtctt ctcttgatgg tgaaactgct ttaatcccct
      361 cttccaaagg tcaactaatc tccagtctta agtgcaatag atgcaaatac agttctcttg
      421 ccatgttcct tctaatttaa ttctctccta agctttcatg tataaaccta gtaatggatc
      481 aagtttggaa ggggtcaaaa ggtttctgtt ccagtaaaat ttaaattgac atcgcatact
      541 gataatggtt tgctctactt tgctataaac accagctact actctactgg gatagcattt
      601 tgtgcaagaa gacagtggtc caaacagcag cagaacgtat tctttgtttg gttgcagaag
      661 ttgatgactg caacctgtga tacagaaatg catatttttt aattcacagt tgttgcgcag
      721 catctttgac caacttgttt
//
LOCUS       KCOD01000839             342 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 93624pyr ultra-conserved element locus
            uce-6198, sequence.
ACCESSION   KCOD01000839
VERSION     KCOD01000839.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 342)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 342)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..342
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="93624pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>342
                     /note="ultra-conserved element locus uce-6198"
BASE COUNT          114 a           66 c           60 g          102 t
ORIGIN      
        1 aaaaacagca catcaagcac cttgttaaat taactctttc attaataacg tggctccagt
       61 ttactcttgt gtgaaaccca taaacagttt ctaattagtc acatgtggat tcaaatgcag
      121 acttgtacgc cataaaccaa cactgaagtg tataagaaac tgtcagtcag atcaaaagtc
      181 aatccaaaat catcccattt gcagagctga gatgctgtca cagttggtta gcccaaatgt
      241 ttaaaacagc aattttattc taattgagca tgagttgaaa ggctgcacac tttgatgtct
      301 ttgcttttat catttgtata tagctaaaaa cagcagggtg gg
//
LOCUS       KCOD01000840             471 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 93733pyr ultra-conserved element locus
            uce-4051, sequence.
ACCESSION   KCOD01000840
VERSION     KCOD01000840.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 471)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 471)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..471
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="93733pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>471
                     /note="ultra-conserved element locus uce-4051"
BASE COUNT          166 a           92 c          113 g          100 t
ORIGIN      
        1 atcttttgac tgcagtgatt cttctctcct gagatgtatt acatttttta aagtcagtga
       61 aaaataaaaa attgcaaaat accactttta atccttggac tacaaaatgg ttgaaacctc
      121 cagaggccag tcagggacag aaacaaaggg ggagggcaaa gggaaaggga gagagcaaag
      181 agtggttggt ttcaaatagc aacattgtcc aaaagggtga aagggaacag atggccatgg
      241 agaatgcagc ctcaaagctc taaagaaaag ggctattttg acagatcttg ctgtttccta
      301 ttcaagcatg aacactctgg catggagagt taagatgata caaggaacaa cctctgttcc
      361 cagcaactga ctatgggcaa ctggcctctg aagctctctg agaaaaacaa catgagacag
      421 acagacaaac agatatggca gcaagcccag atcccagcca ccaggaaagg g
//
LOCUS       KCOD01000841             804 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 93842pyr ultra-conserved element locus
            uce-2341, sequence.
ACCESSION   KCOD01000841
VERSION     KCOD01000841.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 804)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 804)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..804
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="93842pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>804
                     /note="ultra-conserved element locus uce-2341"
BASE COUNT          224 a          191 c          177 g          212 t
ORIGIN      
        1 aatcagcact ttgaatgaaa ttctgtttcc ctgtggcatc ttgaacaggt tttgaaacag
       61 acttataact ctgtggcaca gcagctatgc agcttgaaat ccaagtagca ctcaatttta
      121 ttatttctta tttgtacaat aagcttccca gacgacgtgt caacattttt ggtgaagagc
      181 ttgaaagact tctgaaaaag aagtatgaag ggcactggta tccagaaaag ccatacaaag
      241 gatcagggtt tagatgtatt catatagggg agaaagtgga cccagtcata gaacaagcat
      301 ccaaagagag tggtttggac attgacgatg ttcgtggcaa cttgcctcag gatcttagtg
      361 tttggattga cccgtttgag gtttcatacc aaatcggtga aaagggacca gtgaaagtgc
      421 tttatgtgga tgataatgaa aatggatgtg agttggataa ggaaatcaag aacagcttta
      481 acccagaggc ccaggtgttc atgccaatta gtgacccagc atcttcagtg tctagttctc
      541 cttctcctcc ctttggtcac tcagctgctg tgagcccgac cttcatgccc cgctccactc
      601 agcctttaac cttcactact gccacatttg ctgccaccaa gtttggctca accaaaatga
      661 agaatagcgg ccgtggcaac aaggtcgccc gcacctctcc caccaacctt ggcttgaatg
      721 tcaatgacct gttgaagcag aaatccctct cctcctccat gcactctctc tacgggcttg
      781 gcctaggcag caacagcaac agca
//
LOCUS       KCOD01000842             591 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 93951pyr ultra-conserved element locus
            uce-7811, sequence.
ACCESSION   KCOD01000842
VERSION     KCOD01000842.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 591)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 591)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..591
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="93951pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>591
                     /note="ultra-conserved element locus uce-7811"
BASE COUNT          172 a          127 c          116 g          176 t
ORIGIN      
        1 agaaaccaaa gtcagccgcg caattggagc tggattccat cactcaccac tcagtcacaa
       61 cttcttttga attcctcggc tgccctgagg caaaggctca atgttgatac tgagattaat
      121 cccaaaagag ccccttattt ctcagcagag aaattaaagc ttgccagttt tcctttcacc
      181 tgtccttctg acagctctgt cagtaatgat atgccttcta catggtataa tccccatcct
      241 atggtaaaga ataatttatt aagaaattaa ggggcttagc tcctctctgt cgggttggtc
      301 ttcaaaagtt ggctgatagc agagacagca tgattatcaa tgaaaaatta tttaacagta
      361 ccttggggct tttttagaca aagcctaata agtcacatgg gtagatatca atcaaattta
      421 tcccccttag atttagtaaa tattccccga agttaagtca aattatgttg attatatggc
      481 tcctctcctt gcagttcagt gtgactgtgg ggcacagtcc tagtttaggg agaagcatat
      541 ttttagcagc acagcagcag cgtgacatgt ttgctaataa agctgacaca g
//
LOCUS       KCOD01000843             698 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 94061pyr ultra-conserved element locus
            uce-7514, sequence.
ACCESSION   KCOD01000843
VERSION     KCOD01000843.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 698)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 698)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..698
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="94061pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>698
                     /note="ultra-conserved element locus uce-7514"
BASE COUNT          204 a          123 c          125 g          246 t
ORIGIN      
        1 aaggatgtac ccatatacag gatcatttag actgtagatt gcttttattt tattttgtca
       61 gtgttttgag tctcttaatc catatttgcc tactgcattt caaaagggaa tcaaattggt
      121 tttgtggtgc attaatgttt tatgcaatat tccatagaga acattaaatc aaaataaaaa
      181 ggttgacctc taacacttac acccatttct tatgtcaaac tggaagatgt tgaaagcctt
      241 atatggtcgt aacccttcta tctaactgtg accctcctta acattaagca ggtgactcga
      301 ttaaacataa atcaggcata aaatgccctg catgaggcag cacagtgaat caagcaaatt
      361 atcaaatggc aaaactcgtt ctgtgctctg ggcaatgtaa gctgccagca cttatacatc
      421 aaaacttcac tcagtgtaag attgatttta ttttattttg tttattttaa ttccctacag
      481 caatctgtgt tagttgtgta aaatgctgtc tgcatcatta cgttcctaag aaatgctttt
      541 cttgtttagc aaaggccagc tgcaatctta agcaacataa tctatcttag actgtgctct
      601 gtagtgggtt ctagtggggt tgatattttg tgcagtaata gcaaaactta agcttctgtg
      661 attgtatagg tctgtttgtt tgtgtgtata catacact
//
LOCUS       KCOD01000844             450 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 94169pyr ultra-conserved element locus
            uce-4063, sequence.
ACCESSION   KCOD01000844
VERSION     KCOD01000844.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 450)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 450)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..450
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="94169pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>450
                     /note="ultra-conserved element locus uce-4063"
BASE COUNT          152 a           75 c           81 g          142 t
ORIGIN      
        1 tacattaagc aggggttaca tacagattgt gcttaaggaa tctaaatagg gattgtagca
       61 cacagtaaag atttagtaaa tacttttcta gtccaaaatc aatgccatcg attgtcatta
      121 aagcagcaag ctaatgaagt ggtttttaat tttcaggctc ctgctggagt ctgctctatc
      181 tcttcttttt ccagttaaga gcatcattaa atggtaagag caaacagcat attgagaggc
      241 caagtgtttt attaattcat catcagaatt atctcagcac attaatatta atagcctcaa
      301 attggatttc atttaggagg tgaaataaat atgctgatag taaaagccta catagccaat
      361 gaatcttttg aaatggcact taacatagca atactcaaac cagatttgat aagtcagact
      421 tcctttagta taggggcacc tttcaggtaa
//
LOCUS       KCOD01000845             583 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 94279pyr ultra-conserved element locus
            uce-3174, sequence.
ACCESSION   KCOD01000845
VERSION     KCOD01000845.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 583)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 583)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..583
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="94279pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>583
                     /note="ultra-conserved element locus uce-3174"
BASE COUNT          140 a          138 c          137 g          168 t
ORIGIN      
        1 ggctttccag cttcacacag tgacgttgtc cagtcttcac ggggaggtaa tattgccaga
       61 aaccctgtgt ctaaaatgaa ttggcttcat ccggtaacag taaacagggg gcagtttcct
      121 gttgatcctt caggagttgt ggccttacct gtcaccttgg tttttgtact ttgctaccta
      181 gccctgcccc tggtccagcc tgagcagttg tgttttggtg aacagatgaa gtgcttagac
      241 attcatagac tgagacgcca caaattcagt tgggttctgc tgtagctcta agcagatttc
      301 tgccctctga gccatgacag ccccggctgg ggctctgaat gctgatggca gggcctttta
      361 ttattaatca ggaattcatg tgaattaatt ttcagaagag gagttggaat ttcacatcat
      421 aaattcaatg aactgaaact gtcatgtgcc acacagtcac tgcacctgag ctccatcctc
      481 ctgctgagca cagcttacag aagggtccag ggcagtccta cagcgtgagt ctgttaatta
      541 atagaagctc agatcacatg cctgcaaatt gctttgtttc cac
//
LOCUS       KCOD01000846             653 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 94385pyr ultra-conserved element locus
            uce-1358, sequence.
ACCESSION   KCOD01000846
VERSION     KCOD01000846.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 653)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 653)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="94385pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>653
                     /note="ultra-conserved element locus uce-1358"
BASE COUNT          242 a          119 c           94 g          198 t
ORIGIN      
        1 aaaaacacac aactaaacaa aactcacgca acaaacatct gagaatctgg acacttcaca
       61 tcagtgttta gaagtgtttc ataaatatct taagacaagt gtatcaaaac cttggcatgt
      121 ttaatttttg ttttactatc agaaagttat ggctataatg ccgggtctgc ttaatttgac
      181 ttaagagttt aatatgactt aaacattaaa agctcacact accccgaaat atataatttc
      241 acgcatacgg tgacattcaa cattcaagtg ccagtgtttt tgtactgtct tttggtcaag
      301 tttctttaaa ctttcaaaga atcactttta ggcttacaaa aataaatatt tgtcaaaaat
      361 gttcaataaa tattacacaa aactagcagc aaaaagtatc tagaaatctg tcgtgtgcaa
      421 atagttttct tcccagctat cattcccatg gtcccaaata agttttagaa tctatttcct
      481 tctccttaaa caagctgcgt tcaatctcca agagacaaaa taagattgga agttaaggac
      541 acgcacacaa gacatatata aaattctctg aatgtgcaat aaaagaagta ttttgtaaaa
      601 agttatgggc aaaatgtaca agggcctaaa cctagacttg aaatagcacc ata
//
LOCUS       KCOD01000847             340 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 94491pyr ultra-conserved element locus
            uce-7719, sequence.
ACCESSION   KCOD01000847
VERSION     KCOD01000847.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 340)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 340)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..340
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="94491pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>340
                     /note="ultra-conserved element locus uce-7719"
BASE COUNT           95 a           50 c           74 g          121 t
ORIGIN      
        1 tattgcagtc caaaagtatt tgttttgaat gtattctttc tgaattatca cctctttgtt
       61 ttctttttct aggctgaggt tcagctatgc tatctggaag cacaaagaga tgctgttgaa
      121 cagatgtcct taaaactgta cagtgagcag tacaacagta gtagcaagcg aaaggaagag
      181 tttgctgata tgtcaaaagt tcacacagtg ggaagtaatg ggtagggaac tattcttttt
      241 gttgttttat tctcactgat ctgttatact ttttttccta gttaaccagg attaggctga
      301 gagatggata tatggatgcc tggattattt atccaaatga
//
LOCUS       KCOD01000848             539 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 94597pyr ultra-conserved element locus
            uce-3501, sequence.
ACCESSION   KCOD01000848
VERSION     KCOD01000848.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 539)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 539)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..539
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="94597pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>539
                     /note="ultra-conserved element locus uce-3501"
BASE COUNT          192 a           95 c          106 g          146 t
ORIGIN      
        1 aaagtgatcc tgaaggttga caatcacatt taagacaaat atagaaatct aaaagaaatg
       61 cttacaagca attctgtatt ctgggcaatg atttggtttg aaaatgcatc cagttcaagg
      121 gttaaatgaa agcaaaagca atcacttcaa ccatgttttt gaagaaaata aaccagcttg
      181 atgtaagcta aatgaagggg gtctgtgact taaaaggaat ggacagatag agaaaaaggt
      241 cagaagatta aattttccct aagggaaaag tcattctttg gaatcattaa cctccttcta
      301 ggtcactact gaaaaaaaca gcaggaaatc ctactgctcc tagaaagatg ggtgcatcgt
      361 ataccaccca ctgacctagc aactctatgg caaacataat tgtgcttaca aattctcctc
      421 caggcgtgct tggttttact atgcccattt taaagcaata tgatctttta gctgaactct
      481 gaagtgtatc tataaagaca atgttccagg ggcttgggac gttaaaaaga aggatcact
//
LOCUS       KCOD01000849             748 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 94709pyr ultra-conserved element locus
            uce-274, sequence.
ACCESSION   KCOD01000849
VERSION     KCOD01000849.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 748)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 748)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..748
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="94709pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>748
                     /note="ultra-conserved element locus uce-274"
BASE COUNT          205 a          148 c          166 g          229 t
ORIGIN      
        1 atcaattttc catttaagtg gaagaggtta aacaatttac agaagtctac tgaagcattt
       61 gctccgagga tagctgggcg ctttcttatc ctctccctgc ttttcacttt cttgtgtcgg
      121 tcgaggccag ggtttattgt tttaggcttt tctgaacata caccagtatt tacactggat
      181 tgaaagcatt tgcttccaat gaaaatcttg tcttagatta cagcccagca gtgtaatttc
      241 cctcccagat gggagtaaag tagcagtatt tgcctaaaaa cagtaggaag aacaaactgt
      301 gcattaagcc aaggctgttt ttggcttgag ctaatgatgt aacagaaacc ttttatttgg
      361 gataggtcac tgcccaggat tgaaggaggt gatctggctc gcgcttgaaa ggtttctcca
      421 ttgtatctac ataagtcttc acttaaaaaa tcctgttcct aatgcttctg ctttcataca
      481 gcagaaataa acaggaaagg ttctggggag tgttataggt ggaatgcaga aagcttttcc
      541 tcccctaatg gaggatataa ttcaggtgcc ctggaggcat gctttcagga attctcttgc
      601 ccgaggtaat gggaagctaa ggctgcttga aggccttgat tatctattga tgcacaaagc
      661 tggaaaaaaa gtcatctccc ttggattata gtagatattt ccataaatta tcaatgagtc
      721 ctcctcccgt caggcatgag gcaatgcc
//
LOCUS       KCOD01000850             300 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 94816pyr ultra-conserved element locus
            uce-5872, sequence.
ACCESSION   KCOD01000850
VERSION     KCOD01000850.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 300)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 300)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..300
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="94816pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>300
                     /note="ultra-conserved element locus uce-5872"
BASE COUNT           95 a           57 c           77 g           71 t
ORIGIN      
        1 tgggccaagc accatgctgt aaaccagttc ctatcatgat gatcagattg agaatgaaat
       61 tgcatttctg tcaattactg agttggcaac tgttcaatat atcttagcag caagatgaag
      121 agcggcgtcg gcagctgaga gagagagctc gtcagctaat agcagaagct cgatctggag
      181 tgaagatgtc agaacttccc agctacactg aaatggctgc agaaaagttg aaagaaaggt
      241 caaaggcatc tggaggtgag ctgaggaacc ttgtatctta ttcctatggc aacctagaaa
//
LOCUS       KCOD01000851             468 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 94920pyr ultra-conserved element locus
            uce-3378, sequence.
ACCESSION   KCOD01000851
VERSION     KCOD01000851.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 468)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 468)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..468
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="94920pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>468
                     /note="ultra-conserved element locus uce-3378"
BASE COUNT          164 a           75 c           77 g          152 t
ORIGIN      
        1 ctagttgggt tagagcaaat attgcatttt aaaactttat ggaactaatt tatagtgtag
       61 ggcaggcaca gacttgatct cctggcagca aaattttatg tttccatttc agcaatactg
      121 cctaacacaa taatatcagg ccagcaaatc ttaaatataa gttaagctaa catgatccat
      181 tgccttataa agcaaaagta ccctgtggag tcatgctgaa tatgccaagt gatttttcaa
      241 aatttaatca tcctaaatgt cagataaagg tgcttttgct gtcattcttt aaaaccaggc
      301 tgagtgtgcc ttcaagttat acagaaaact gttcgaaaat agctacgtta aaatattaat
      361 ctgccatgta aggaaggaaa tattgacgtg ttttattgaa aaataaagaa ttgtataata
      421 aagatcacca gttttcatat caatatagat attactgttt ccttctaa
//
LOCUS       KCOD01000852             772 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 95028pyr ultra-conserved element locus
            uce-663, sequence.
ACCESSION   KCOD01000852
VERSION     KCOD01000852.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 772)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 772)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..772
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="95028pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>772
                     /note="ultra-conserved element locus uce-663"
BASE COUNT          229 a          140 c          151 g          252 t
ORIGIN      
        1 gtccagaatt tcttcataca aagtctacat ctattccctt acttagttaa taataccaaa
       61 ctcaaccaaa tcaaatagga tacttgattc ttccttcaca gaaaatattt tacccattaa
      121 tgagaagttt tcttatataa aggaattcaa ttttttttga ttggcattag actcacagac
      181 agacagaaat aagctgccat tcttccattt gatagccaga cgctgccagt tgttgctagg
      241 gcagtcatgc tgttaaatta ggtctaatga acgagtaatt gctttaggta tagtgaacca
      301 tttcaaagaa aacaaggatt ctaattgatt tgcaatttgt ttggcacatt gcattgtctg
      361 gggctattga ttagtcttct ggatttcaca ctgcatgtgt ttccctttat taagggaata
      421 acaggttact gattactttc cttctgggtt taatgtagcg gttaatgtct actttgttct
      481 tgtgtcatgt cacaggcaag gaaggaataa tatgcaagtg ggtggccctt tgctaagaaa
      541 ctcccctgct gctttgagct gtgtactcta agacatgctg aaaagcagat caagagaaag
      601 ggttagaata gcaggactca caagttatgg cctgagtcag gctagaccca ggctaaaact
      661 tggctttcct ttactatcaa agcacaaaac aagtggttgg cagtagattt gctcgtttga
      721 ttagatgtct ctaaataaga aagcttacaa tatttgtcct tttgctgcaa ga
//
LOCUS       KCOD01000853             817 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 95139pyr ultra-conserved element locus
            uce-1547, sequence.
ACCESSION   KCOD01000853
VERSION     KCOD01000853.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 817)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 817)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..817
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="95139pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>817
                     /note="ultra-conserved element locus uce-1547"
BASE COUNT          250 a          160 c          119 g          288 t
ORIGIN      
        1 atatactgta attctctgaa ataatctcaa attaaaatag ctttaaaaca tcccaaactg
       61 cctgctttgc ctgcctatct ggatatacat aaatacagct atttttatta ttcagatgga
      121 atatttacta tttgatagga tatgggttgg ttttttttta cctctgggac attccacaga
      181 tgctacccaa cttcccctaa caatatttaa attgccttcc aaagcttctc taaatatttg
      241 ctgtgtattt agcatgccta agatttgccc gttatcccaa agtctttttg ctgtaaattg
      301 caattttaca acttcatgcc tgtgatatat tttgacaaag ctctgctgac actctctatt
      361 ggcctccaaa gacaaaatag ctgatactcc atgagccacc agagaactct caatttgttg
      421 tgagacgggc tgctactttg ccatcctcaa tctgcatgga gaaagattaa acattcaatt
      481 tgttacttga taggccacaa ggttcaccac ttaccataca aatggaaaac attactgtca
      541 ttcctcaact tgcttgcctg agtattttat tatttgtaat atttacttca gggaaattat
      601 gattcatgtc atatttatct tcatgaaaaa tgagcatcta aatggaaatc accttttgaa
      661 tgtaccagga tatagtgtaa tactaatatg cttcatgaac tataaaattt agtcacagtg
      721 tatggatata ttatagcatg actttaatac tctcacatca agcaaatttt ctctgtgtta
      781 agctgatact ctgagacctg atttcagttt gataatc
//
LOCUS       KCOD01000854             750 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 95250pyr ultra-conserved element locus
            uce-2005, sequence.
ACCESSION   KCOD01000854
VERSION     KCOD01000854.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 750)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 750)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..750
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="95250pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>750
                     /note="ultra-conserved element locus uce-2005"
BASE COUNT          250 a          133 c          143 g          224 t
ORIGIN      
        1 aaacataagt aaaagaggtg gctgaaacaa gcaggtggat atatctgcac atgtagatgt
       61 gtacattaaa agtggagaaa tggcttccat gcctatgcct tgctctgctc acctgagaag
      121 taggagaata tttgcccttt aaaactagca cctgagctgc cacctgcatt tgccaagtac
      181 ctgctgacaa ccgtgagacc tgttatctct caaaaagagg taaaaataac aataaaccag
      241 ggatataaca actttaaaac caaagctttt tctctctttt ttcctcactc tgtctccaag
      301 tacacctttc cagctcatta ctgcaaatca tttgaattcc agcacacaat gtcacctgca
      361 ctgtaatctg attactttat ggaggaatta gtatgtatat ttaatgtaga aaggttttaa
      421 tcttgatgaa aataatccta aggaactgtg atagggctgc tcatatgtct ggcagatatg
      481 ccagtaacat gctaataaat gacagctgat ttatgtatct ggattctttt atttataaaa
      541 atagcaagtg gactgatttt tgatattaat aatacaagtg aatccacttt gattagactt
      601 ctgtagagag ctgtgcatat tcggcattac aattaaatct tatgatgtgg aatgggaatg
      661 acatgctaat gaagcaagcc agtgagcctg aaccaagaat gtccaacatc attatgggat
      721 atcttagatg aagagtaatt ataagaggaa
//
LOCUS       KCOD01000855             503 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 95471pyr ultra-conserved element locus
            uce-6753, sequence.
ACCESSION   KCOD01000855
VERSION     KCOD01000855.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 503)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 503)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..503
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="95471pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>503
                     /note="ultra-conserved element locus uce-6753"
BASE COUNT          157 a           94 c          118 g          134 t
ORIGIN      
        1 taacatctac tggcaatgct gaatatatat gtgcaaacag ttaagctgcg gtttttcagg
       61 ttctaccaca ctgagattct gaggactccc cccaattcag tttctgattg tttacaatct
      121 cctgctgtgc ctgcaatatg cttgaattga acttaaaaca cataaatctg ccttcaaagg
      181 cagcttggga ggcaaaagtg tggctaggga attttaaatg gaagggacaa gcaatggcta
      241 caaagagctc agtttttagt agtaggtgtt gcagtttgtt ccaattacag cacgcattag
      301 agtgtgaaat gttcatgcca atctagtaaa aggaaaaagt acacgcaatg ctgaaattaa
      361 cacctttgga caagcttctt tacccagcaa gtgcagctga ggcaggttta gagaaaagca
      421 gacacaaggg gttgtgggaa tctgacttga aaattggaac cttccttgac agccgaggag
      481 aagaattgaa gagtgcactg cat
//
LOCUS       KCOD01000856            1230 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 95580pyr ultra-conserved element locus
            uce-564, sequence.
ACCESSION   KCOD01000856
VERSION     KCOD01000856.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 1230)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1230)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1230
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="95580pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1230
                     /note="ultra-conserved element locus uce-564"
BASE COUNT          358 a          267 c          217 g          388 t
ORIGIN      
        1 ttaggttgat aatcagattt ataagccaat accttataaa tggctaaaga gacctctgag
       61 acaattagaa acacgaagtt cttccaatgc ttacagggac aaagctgctt ctgtaacaaa
      121 accatttctg cctctcagag aagcaatggg caagtacagt tacacaagag ggaagtgaag
      181 ggaaggtcac agggctgtgt ggtacaaaaa atgccagaaa tagatgctga tcaaaaaagt
      241 ctctaatcag ttctaaattt cttagacagt ttgctttctt gctgcaccta gaaatgtgtc
      301 atttgtctat taaaaaacat aacagcttca ctggctttca ttggcctctc cccgtttaat
      361 gtctctaact tcatgccatg ttcttttcct ctttcagcac ggctgagcaa ggctgacagg
      421 cggattcctt tgcttttcag ggtattaaag ccactttccc gctctgacag cctgttctac
      481 tctgccacct tatagctctg gcttcacact tctctgggca gccactgctt cttgacagac
      541 cactgtcact tcccatcatc ctctctgtat atcctgttct ctccccctca gcacgcatcc
      601 cgactttcca accaatgcaa ttattttttt tgacaagcca tccatcagct ttaactttaa
      661 aagcactttc cgctgatatc cattgttaaa tcccttgctt tttatggagc ttgcatgaga
      721 gaatatgata tcagacattc aaactaccaa accatgtaaa tttactttgt tctcagctat
      781 gtttccaatt tcacgtccaa tttttcggta cattatgcgt agttgttgtg cttaatatga
      841 tgttgtcaaa tcccattaaa gttcactgca ttgcacggct ttaaaaacag gttacaattt
      901 gcattctata aagaaaggaa ggagtgcagt ctgaagtcaa gctgaatctt attaaaatta
      961 tctgttcaat tgttacattt gtagatggag taattttgag gcattagctg agacacatat
     1021 gaaaatgtca gtgtgccaac taatgacaat gaaagcaaaa ggaatatatc tgtgaaactc
     1081 aataaagctc ctttgctggt gacataaatt tgatgataat ccgaggaaat gaataaggga
     1141 ccatccagtt tgaataggaa ttaccttttc tattaaatca ctttgctgta tttccacttg
     1201 gcctacatct tggtcctatg ccacaatgag
//
LOCUS       KCOD01000857             635 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 95690pyr ultra-conserved element locus
            uce-3073, sequence.
ACCESSION   KCOD01000857
VERSION     KCOD01000857.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 635)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 635)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..635
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="95690pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>635
                     /note="ultra-conserved element locus uce-3073"
BASE COUNT          192 a          141 c          129 g          173 t
ORIGIN      
        1 atcgtttaaa cctttctcct tcagggaaac acattccacc tagaaacaca tcctagaact
       61 ttgctgtaag cagccactca gtttctgcat gaggagaaac aaaattcaaa acaggatctc
      121 gtttatagct acaagataga tttgaggttc ttgaattggg aagtatgacc agctgcaaac
      181 agcaaaggtg gaagtgaagc actacggttt aatgttctat ctagtgtggg ttaataattc
      241 ttcttttccc tgttttggtt aaatgaacat tctcttacca tttgtctggt ttgtccgtgg
      301 ttaggcagac ctaacaaaca ggaaagagaa tagagctggt aagaccattg cttttccaag
      361 acagaaaaaa gtacaaaatc aaaacacacg cagctatgat tacaactgtg ttgttttgct
      421 aagcctgagt tgcctactga actgacttct gcaaggtgac ggagtggctc gaagagcaga
      481 ggccccaagt acaaacacat tccattcacc cagtctcttc tccatttact caaaccttgc
      541 ttcaaactac ccacacctcc tcacgtctgg ggtgacgttc tcttactgac gtcaagaagg
      601 agaaagtgga aggcattatt cactgtcaag gcagc
//
LOCUS       KCOD01000858             786 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 95801pyr ultra-conserved element locus
            uce-6113, sequence.
ACCESSION   KCOD01000858
VERSION     KCOD01000858.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 786)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 786)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..786
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="95801pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>786
                     /note="ultra-conserved element locus uce-6113"
BASE COUNT          254 a          161 c          145 g          226 t
ORIGIN      
        1 ggatcagaca tttttagagc tcagatggaa aacaccaact cgaatatgtt ttgaaacaca
       61 atttccacag taccttaaaa agcagctgtt tgtagaagca tggtttacat taatcagtac
      121 ctaacaattt tatatacaac ctttctaaaa tccatttgca taatgataat ccgcatatgg
      181 cagggtttaa gttatttaag cggtgttata tttcactatt tagtcttgct tcaccactgc
      241 tttagcagtg aatccttctg gagtgtaatg cagctaatga ggtagctttt taactgaaca
      301 aactgacagg tcccatatct gcagaggcag cttgaaaccg tgcccaacct ctcggcttcc
      361 caagaggctt ttcaaaattc aataaataac atctgtaggc gatgttgggt gcagacctag
      421 cagagtgcgt cataacactg agctggcaga acaaagaaac catgacgact gccaagtttc
      481 catggcaacc gctgcgaggc ttggagagta taatagcaca tcaatcattg tccaaaagaa
      541 cttcattatc agcaagcctt taggatctgt ttagtgtgca attgtgggtt aactcacctc
      601 aaagccttgc tctctagcaa aagtggcagc ttcctgaaat aataaaaaaa gaacagttaa
      661 ttataaagtg ctagataatg aagaaataac acattctgaa actcattcag gcagttttcc
      721 ttttacacga ttatctcaat atagccatat acagttgttc aattctgata gtcgcaccaa
      781 aagctt
//
LOCUS       KCOD01000859             806 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 95914pyr ultra-conserved element locus
            uce-129, sequence.
ACCESSION   KCOD01000859
VERSION     KCOD01000859.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 806)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 806)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..806
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="95914pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>806
                     /note="ultra-conserved element locus uce-129"
BASE COUNT          263 a          131 c          139 g          273 t
ORIGIN      
        1 tgcttatgaa catgttagag agctttatct gccacttctt tgcaaacaga gacttcagaa
       61 cactctcatt aatgaagcga aaaaaagtaa tagctctcct aagaaatggc atttaaaagg
      121 agtagtgata aatatcagaa acaagtcaaa agagttgaag aagttttaag cattatcctt
      181 ttcagcatgt ctatcaatag aaagctgaca atagtattat tgctatttac atattggtaa
      241 cacactggta tgaatttgca taacgtattg tagttctgtg ctctagggac ttgcattgta
      301 acatattggt gcttaatgaa ctctgaaaaa attgattttc cacagagtaa attaaggaat
      361 gcattatagc tgttaaagca atcttaaggg aaatctgagg cttccactgc agcaccgtgc
      421 ttagtaagta ataaattaca tgttatactt atttgcctta attcatgcta attttgtcca
      481 attaatgtat cacagtaatt cagaagcctg tcacaggaga gctaattatt tattggattt
      541 ttgtgttcag ctccctagga gtctactagc aaacaaactt gcgactgtct ttctgttagg
      601 tccacaatga cattcttatg tcttactggg gaaagaaaaa gaatgttaat ctttatttca
      661 gttatataaa tggatcatta ttcatttttg tttacaaatt ggtgtcacgt catgacagac
      721 tgttagaatg aaatccaatg tttttcctct tcctgtaaat gcctgaacat aacataattc
      781 ttcttaaaga ccatggcagt actttt
//
LOCUS       KCOD01000860             454 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 96020pyr ultra-conserved element locus
            uce-1204, sequence.
ACCESSION   KCOD01000860
VERSION     KCOD01000860.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 454)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 454)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="96020pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>454
                     /note="ultra-conserved element locus uce-1204"
BASE COUNT          109 a           93 c          121 g          131 t
ORIGIN      
        1 tttgttgttg accttgggca aatgagcttc ttgccctggc agaaatgaaa tgaatgataa
       61 atgtagagag tgtctttgct gagtaatggg gctgcagcat aggctttcca cagaggtttt
      121 ctcctgcaca gcccgaggca gcccgaggac ccctgctgtt catttaaata ggtatgtcaa
      181 atctgcctcg aaacgccgct ggtttgatct gtggtaatat ttgtgaaggt tccatatgga
      241 cttgagcccc ctgcagtgct aagaaataat gtacaacgct tcatggtgca gacgcaaatt
      301 ttctctgaaa agggatgcaa tgctgcgttt tagctgtcgg agaggatgat ggagctgacg
      361 cgctaggcct gtcaacttgt tacacggatg ggttgcacgc agcaaggctg tggaaaatct
      421 gtgcctttta acttttctac ttaatcacgg ttgt
//
LOCUS       KCOD01000861             498 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 96121pyr ultra-conserved element locus
            uce-5415, sequence.
ACCESSION   KCOD01000861
VERSION     KCOD01000861.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 498)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 498)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..498
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="96121pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>498
                     /note="ultra-conserved element locus uce-5415"
BASE COUNT          171 a           86 c           90 g          151 t
ORIGIN      
        1 gaagaggaat tctccttcca tgtcttcctt tgaatttgct ggatgccact ctgaaagaat
       61 caagagttca agatttagtg ttctaataaa agtatgcatc ctgaagtgag acctctgaaa
      121 tgatactgca tcatcagtaa agtgaatcca ccagatatcc tatacattac agtgaaatat
      181 ttcaaatctc atcttcctac agcactcaaa gtgaaatgaa gctgaataga acaaatcctg
      241 atttttcaca ttcgctgtta ttaaagaatg gaacaaagta gtgccaaggg gaataagaga
      301 ataaagctat ggctattcag ttgtgaagaa agtaaattaa taatactaac ctcatttctt
      361 ttgtacatgc tttcaattga tgccccagag aaaaattccc tttataggaa tggggaatgg
      421 acaatagaag ctattgctgt atcttgcctc agtgctattg acaaattgta tatcagcgtc
      481 agattttaag atgtcata
//
LOCUS       KCOD01000862             682 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 96230pyr ultra-conserved element locus
            uce-3792, sequence.
ACCESSION   KCOD01000862
VERSION     KCOD01000862.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 682)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 682)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..682
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="96230pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>682
                     /note="ultra-conserved element locus uce-3792"
BASE COUNT          197 a          139 c          147 g          199 t
ORIGIN      
        1 agatctcttg gctcaagaaa agacatacaa agaggaattt cttctgttta cttattttaa
       61 tgtgttctct ccctgccccc tcttgtcttg tctgttcctc ctgtcaaata aaggccaaga
      121 aacaccaggt ctttctaaca gagacgtatg aaaacaacat gagagagctg gagttactct
      181 tggacagctt tgctatgtca ggccagcgga cagcaggtta gttgaaggta taaaatgaca
      241 gatgcatctg tcaatgttcc aaagtcacta cattgtggga attctgcaga tgcctcttgc
      301 attccctctt ctcaacatgc tttgatttga tgacatgata agagcagttc tcacagcagt
      361 caaatggcct tgctagctga gaaagggtga cggattgtgg acctgctgtt gtcagcccag
      421 agcttgattt acaaatgctg gggtgtatat gatcggtcag aaaagggctc acttgctgtg
      481 ctctaaatcc aactgagaga aaagtcctta cagtatacct gcaaagggaa cagatgtttt
      541 gcctgaactg agccaaattc tgaggcaacc ttcagcaact taaaggtcat atattcaaaa
      601 aggttgtgta ggacgcatga tgcaacacaa tactttttac atttgattgt actatgttgc
      661 attcatttaa tctgatacag aa
//
LOCUS       KCOD01000863             730 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 96341pyr ultra-conserved element locus
            uce-4550, sequence.
ACCESSION   KCOD01000863
VERSION     KCOD01000863.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 730)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 730)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..730
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="96341pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>730
                     /note="ultra-conserved element locus uce-4550"
BASE COUNT          225 a          142 c          133 g          230 t
ORIGIN      
        1 ctggcaatgt ctgtatcatt cacagctctg agtaacagcg agagactgtg ctttcctatt
       61 gctttagtga gtgtactcct caaacattta ttgtattgca ggggataaat aatgcatacg
      121 agggaacaaa atttgcatta taagttgatt aaactgctta acagttttta gccactctct
      181 aaataaggaa accagattta atctatgcag tgtttcatgt ccaaagaact agcatttaat
      241 ctctgtttaa ctgaaattta gttagcaatg ttgacacctc tgcattttaa cactgggatt
      301 tctttgtgag acacaatccc tttcactcaa cttaatatcc catcttggtc tctaagggaa
      361 aataattgag tttaggctag ttctaaatag cgataaggac agggaacaca gatgggtatt
      421 tcattgatta acactaacac tggcctaagg ccttggtgtc aggcattaga ttaggacatt
      481 actaagagaa tgacagagtt ttggcacttt attcctcctc aataacattc tttcacatat
      541 taagtttatc ccaccctagg tagctacttt atcatgcaga aggccttaat ccactgatgt
      601 gactctatct gctttcactt tgatgctgcc tctgtttaca agagtaatgc agcctgtgta
      661 agacaaagta ctcgtgacaa gaacaactga ataaggcttt tagatgcaca gagctctgac
      721 ctaaaaaaaa
//
LOCUS       KCOD01000864             793 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 96453pyr ultra-conserved element locus
            uce-7958, sequence.
ACCESSION   KCOD01000864
VERSION     KCOD01000864.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 793)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 793)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..793
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="96453pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>793
                     /note="ultra-conserved element locus uce-7958"
BASE COUNT          270 a          154 c          129 g          240 t
ORIGIN      
        1 taaaatatat gcttaaaaca gatgggccat tcaatcacag cagtaatatt ctttaatgct
       61 aatttttaac aataaaagaa acactatcct cccacacaca aatagccata attatgtaaa
      121 gaatgactgc ttcagactga tgactttcaa tatgcttgag tctagcatac tggtataaga
      181 ggccagaaag gtcaacagta attcataact gctataaaat tgtgtagcat cctagggctt
      241 ctggagaatg ctgacattat catgcttctt ctgctggttt gtatatgtaa atttgtgata
      301 ggaagtgcac tgctttgcca tatcgcatgc agagcatcaa tcaggcagta gaatacatca
      361 gagtattttc attatgccta gttatttact gcatcagaag aaattaccct ggcaagccaa
      421 gcggccttct ctggatagca tgatatgacc aaccaggttt cagctcagaa gtcttgtaaa
      481 cattacagga ttaatctcac aatcacaatc atcaatcttt cctagtcctg cctgggtgca
      541 actgcggaga ttggtaacca ggcaatgtag atttaaattt aaccctgaac atcaagagct
      601 atatgtcaga tccatgcacc atattacaaa cacctatatt tttactccag ctttagtaca
      661 aaatgatgaa aacataaaat ttttgcactt caaattcatg tctaattttt cattcccatt
      721 tttgatgcat tatggggaaa taagaaatat tctgaaaaag acacatttca taataccaga
      781 atctaatgct aaa
//
LOCUS       KCOD01000865             359 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 96559pyr ultra-conserved element locus
            uce-1065, sequence.
ACCESSION   KCOD01000865
VERSION     KCOD01000865.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 359)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 359)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..359
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="96559pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>359
                     /note="ultra-conserved element locus uce-1065"
BASE COUNT          130 a           62 c           71 g           96 t
ORIGIN      
        1 gaactaaggg gaaaagaaaa ccttcagaag actacagtgt taggcacagc ctggccacgc
       61 ggttcagggg ttcacctctt gacatggggc aacataaact cttggaaata aatgtaaaca
      121 atggcaatga gcttgtaatt tatattttat tttgcacaag cttgcatata tactgcacat
      181 acattcagtt tagagaagat ggaaggcaca caaggcaatt gaactactgt atcctttaag
      241 tggtacaaag caaaaaggta aaagtctgga gagtatacaa aagctttaaa cacacaaaat
      301 aaaatccatt tttcctgtgt ttatcttaaa tttagtagct gccaagctag aattgtaac
//
LOCUS       KCOD01000866             576 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 96670pyr ultra-conserved element locus
            uce-1354, sequence.
ACCESSION   KCOD01000866
VERSION     KCOD01000866.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 576)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 576)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..576
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="96670pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>576
                     /note="ultra-conserved element locus uce-1354"
BASE COUNT          152 a          115 c          137 g          172 t
ORIGIN      
        1 aaaattgaaa tatttgtgtt tgcctgaagg tgaaattgct acgaagcttt tcccttcttt
       61 ctctcctgtg ggctggcaat caggtgttgt gctgggaagg ttacatggca taattcccac
      121 gaatgtagga ggaggatgaa aaagataaag aaattttgtt tttctgagct ggaggattct
      181 ctgcatgact tccccactga tgggatcatg tgctttcagg ctgagatttt attaacaatt
      241 caaatggaaa ttgagggcac aggaggagca gattctcaca taaacttgat ctgtccatga
      301 atgcagttct ctgtttgccc tgaccctgca tggcttaaga cactgcctgt gaggcctgag
      361 tgccagacac aaagaccgaa atgaaaagca agcacattcc agtagtctgc acaaaggcaa
      421 tggagcagtt tctagccgtc tccccaggga gagatcttat ctccttctaa aaccctttag
      481 agtgtttatt tgtactctag cacccgaggt ttattgatat ggatgctgat tgggagaaac
      541 agaggtttct ttccccgata tttatcgttg ctttgc
//
LOCUS       KCOD01000867             539 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 96780pyr ultra-conserved element locus
            uce-5739, sequence.
ACCESSION   KCOD01000867
VERSION     KCOD01000867.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 539)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 539)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..539
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="96780pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>539
                     /note="ultra-conserved element locus uce-5739"
BASE COUNT          167 a           93 c          100 g          179 t
ORIGIN      
        1 tgttcaatgc aaagctaatg tctgttttgt ttacaaaaaa ttgaaatgta ccttaaatgt
       61 gctatagtgc cttagacaga tggagctttc tgtagtcaaa cctcagcttg aaagacactc
      121 agcttgtaga gctgaagctt agttggtggt gcacttcatg tccttcatgt aaaatattct
      181 gtcactttta attttgtacc ttgtttactt tctctgttac aaaagaactg ggacttgttt
      241 ttagcagctc tgattaagtt tctattgatt ttcgagatag gaaatggaac tttcagattt
      301 cccacatgaa tttaaagcaa gtcagatatt aacctcgagg taaaacatct gccatgacat
      361 tcaaagaata gacaagtact atcttactga aaacagcatc tgtgctcaaa cctcagtgcc
      421 tgggatttag aattggagaa agcagcagga cagtattttc acatgtgtca tgcataaaca
      481 tattgacatt tacaagatat ggattattat gtacgtatct cttaaagcac tgatggcta
//
LOCUS       KCOD01000868             535 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 96889pyr ultra-conserved element locus
            uce-2795, sequence.
ACCESSION   KCOD01000868
VERSION     KCOD01000868.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 535)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 535)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..535
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="96889pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>535
                     /note="ultra-conserved element locus uce-2795"
BASE COUNT          183 a          113 c           96 g          143 t
ORIGIN      
        1 ttttcagtag aagtgcaaag caaggtgaaa gaaatagcag caggaacaca aacacaaagc
       61 tgaaataaaa aaatgtagaa tcacaaagaa aacctaaaca aataaagtgc aaacagagag
      121 tgacaagcgc actcagcccc tggattggtt atggatgagt cgacaagtat atgatgaaat
      181 taatgaccct ctgtcaactt tttagatctc acttttaaag agaatggacc aaaaatcaat
      241 agcccccaaa ccactagtac tccagtgaac cagtttatca tttatcttac tgctggcact
      301 catatagaaa gtgcagccaa gcacagcata ggactttcat tggtagtcat cattacaagc
      361 aatgtttgag cactccagtt aaaggtcaaa ggtgtgcagt acagctcctc tgagaagtac
      421 ctatttgaaa ttaccaatat ctgtgtatgg cttatccatg ctctacacta ttattctatt
      481 ttttccccca cccccttgtg cattttcttg ttctgagctt taccttgaag cagag
//
LOCUS       KCOD01000869             790 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 97002pyr ultra-conserved element locus
            uce-2781, sequence.
ACCESSION   KCOD01000869
VERSION     KCOD01000869.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 790)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 790)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..790
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="97002pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>790
                     /note="ultra-conserved element locus uce-2781"
BASE COUNT          213 a          163 c          183 g          231 t
ORIGIN      
        1 taagtgcagg gatatgagct tcaacttttg tgaaacagaa gtacctctga ctttagtgtt
       61 gtgtagctgc agccttatgg gaattctgca tcttttcaga gatgcacaag ggcttagtgg
      121 tctcatttag ttatctatgt gcccctgaag aagccctgct agcaataaaa cactctggtg
      181 gcaaacagct aattcattaa ttaaccacag tatttgctgg aaaggaaagc actaaacaag
      241 gctgcagaga aagtgcaatt gtggttgttc caggtccctg tctgcagtat gtgcggcaga
      301 ggcaagcaat gcctatgctg tttctaatta ttccaattat catggcacac tatgaaaact
      361 tgattaataa cactgaagat attgttgtgg caattagcca tatggttgtg ggactttatt
      421 ctgtcacgat ttagccatta gcatctactt atgtttgtca gaacagagca tccgtgacaa
      481 gttggagttc cgctcacctt gccgagtccc tggtgagcaa caccagagaa atgtttattc
      541 ctgggagccc tgcgtctgag taaatttttc atgtggcatc cggtctgact ggggacaaat
      601 gtcaagcagc ttatgcgacg acccatcaag ccaggctcct ctgcaaaagg tgcctcgttg
      661 tcagggcaga cttctttcag gggaggattt gaccaataaa atcagcgtca aatgtcttgt
      721 attcaatgtt ttcagtggtt aacagttcag acagcatgca cctaccctta tttagatgtg
      781 atgaaatgct
//
LOCUS       KCOD01000870             873 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 97113pyr ultra-conserved element locus
            uce-1573, sequence.
ACCESSION   KCOD01000870
VERSION     KCOD01000870.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 873)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 873)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..873
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="97113pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>873
                     /note="ultra-conserved element locus uce-1573"
BASE COUNT          285 a          153 c          157 g          278 t
ORIGIN      
        1 tcctatttca acatataaag tggcaagcca atttatgcag cttaaaccat tgctaaagaa
       61 gatgtatcaa aaattgcctg tgatcattac aaataacagc ctgaaatgtt cacaagaagc
      121 tgtttgctta tcatattttc attaaaacat cttttcacct gattttcttt tcccatgcct
      181 gtaacctgca ttgtaatcag tcttattaac tgagaacata aatatgattt attatggtct
      241 gataatggaa gctacatgga ccaagagaag ggatatattg tcctttgata aaatggctct
      301 tttctctcaa atagagctct atcacgagag catgcagaat gtagtgagtg attatttcct
      361 gagggtgaat gatggcagaa ccctacagaa aatcttcttg ttggccatga cagcctccga
      421 gtgtccccaa atctcactga gtttgacaac ctgcagacac ttttgatgaa ctgtattctt
      481 ctgtcagaga cagcctgtct gggaggagaa aagggaacct ttatcgtctg atctgctatt
      541 attgtcttga tcttttataa gcaatctcta atgcacatga atataatatc ctttcacaga
      601 agtgccaaac ataatagaaa tgtagttaaa ggaccctttt cccggttatg taaatgtcct
      661 aataccataa ttagaaaaga tgggttgcga atgatagcag taaggaaagg gtaatcaaaa
      721 tgttttaaca ttatctttct gttttaaaga ccaaaatctt tgacaaatag catttatggt
      781 agatatgggg aaccagcttc tgctgaagct tttacctaaa gaaaatagtt ttgagtgtaa
      841 aactgttata ttttcataaa acacataaat ggc
//
LOCUS       KCOD01000871             632 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 97225pyr ultra-conserved element locus
            uce-2049, sequence.
ACCESSION   KCOD01000871
VERSION     KCOD01000871.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 632)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 632)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="97225pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>632
                     /note="ultra-conserved element locus uce-2049"
BASE COUNT          147 a           99 c          131 g          255 t
ORIGIN      
        1 caaatggaaa tttttgtggc ttactctcgt gggccccctc gatcatgact gattttcaag
       61 tttgatttct ggacggtaga aagagagttg gttttgtttc gagaattcaa aactttggct
      121 tgatttcttt ttttcccttt gcttatatct agtgtttaga attttgtctt aacaaaagcg
      181 gtaagtttca ctttttattc tgtatcgtgc agttacacaa taaggtaatt agaattagga
      241 gtactcggtc actttgcgtg gataaatgta ttagttaaaa cgttaggggt ttgctttttt
      301 gctgtttaga tcagagtttt ttctgattct tctgtcctca ttgtgaacat aaccgtgtag
      361 ttgaaacagt cagacttatt tttgtaacgt atgttattgt gtgatgcagt tttttgcttc
      421 tgtctccaat attaaaccat tttcctaata cttgtctctc tactttgtgt gttgtattgt
      481 tggtggtcat tctgtgttgg taatacatct gcacacctca ctgtttcacg tgcctgtatt
      541 tgttggttgt gtacaaaaga tacagtcgat tccacctaag tgaatagctg attggggggc
      601 aaaagaggat ttgtacattt tagacatgtt ct
//
LOCUS       KCOD01000872             416 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 97333pyr ultra-conserved element locus
            uce-3303, sequence.
ACCESSION   KCOD01000872
VERSION     KCOD01000872.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 416)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 416)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..416
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="97333pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>416
                     /note="ultra-conserved element locus uce-3303"
BASE COUNT          149 a           65 c           80 g          122 t
ORIGIN      
        1 agggaagccc actcagaacc attaaacaag cagctcagga attaaattac ccccagctat
       61 cataagcaaa taacctacat gggacattgt gttatctaac tggccagttg atgctttgct
      121 ttttccagct ttaagaaaga aattaaatgg tatggcagtg tattactctc atttccagtc
      181 ctctggagca gataaacatt atcatgaaac tggccaagga tgaaatttaa ataagtagtg
      241 attggagagg agaaaagttt ccaaattaca aaaactgaca aattagttta attaactgca
      301 tattttggag tacaaggata tggggaaatt atttattttg atgtgtaatg catactcaat
      361 atttctgtaa aggattaggg tatagaaact ctgccacaca attattaaga agtagg
//
LOCUS       KCOD01000873             565 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 97445pyr ultra-conserved element locus
            uce-72, sequence.
ACCESSION   KCOD01000873
VERSION     KCOD01000873.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 565)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 565)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..565
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="97445pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>565
                     /note="ultra-conserved element locus uce-72"
BASE COUNT          182 a          121 c          105 g          157 t
ORIGIN      
        1 ggctgcagga gtgaccccga tccaggctag tgtcacccac ctctttcctc ttccctgttg
       61 gggaggggtg ctgtgaggga gtctcctgcc acttgccctt cttgctaaaa gtagaactga
      121 aatggagaca gaaaagaatg caaatactgg cacacaagga aatactgaat tacatattgg
      181 tcgaccaaaa cacaaatcaa ctcaaaacta caggagtcca ccaacatgca cataaatcat
      241 ttataacgat aatccaaggc tgggtccaaa tctcattaaa gtatatgaat ccttaatcta
      301 ttttggcaaa aaagagccaa tacacatttt ttctttttat cataaattac agttctgtgg
      361 cactgtgcaa atattaccaa gctgtaagac agctgtgctc cattaaaatg tgtaatggtc
      421 gctgatttct tacagcacat ggtcatcagg ctgaatctac agccagtaat taggaagatg
      481 aaatgtttaa ttgtgcctta attttgataa aatttatctg tcacacatcc cgtagtcaag
      541 cagtatgctc acaaatcaat gtcat
//
LOCUS       KCOD01000874             799 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 97558pyr ultra-conserved element locus
            uce-5255, sequence.
ACCESSION   KCOD01000874
VERSION     KCOD01000874.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 799)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 799)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..799
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="97558pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>799
                     /note="ultra-conserved element locus uce-5255"
BASE COUNT          222 a          176 c          179 g          222 t
ORIGIN      
        1 caatcttact aggagcaaag ctccatttgg aaactttaaa acaaatactc tgcttttact
       61 taaagcttta attttttctt cttttaaaaa ggagccctta gggaagaaat gaagtaacca
      121 tgcacattcc aatgacatag ttatgacagt tcagaggcta actatgtagt gatgaatgaa
      181 acaaaaatga aacgtggaaa gaaagagaaa aattccatgt tttaaaataa acgaaagtaa
      241 cgtacctgtt gggacattct gaataagagg ttagtgtcag tgttctgcca tgtccccatg
      301 aaaccagagt cggtcgctgc cgttcttgtt ccgaactgca tggagttgtc agtgcaggag
      361 tctcttaaag tcaagtctct tgccctcttt cgctctctgt gtctctgtgt gtgtctgtct
      421 ctcacatcca cttctgcctc ttctgactga aaagtgaagg tggatttttt gagcctcttg
      481 gcagccagta gcaggagtgt agtgtagtta agaagctagc tgcactgtgc atttcatttg
      541 ggaagggggg attcagggga gagggtcaga gctgctttcg caccttcagc agagagaccc
      601 ctatcattta tgcatagatt gtgactcccc aagctcgcct ttgctcagtt taacagctgc
      661 ctgtcaggtg tgcatgcagc actaaggaga cccaaccatc agcttcaaac tctcagccac
      721 tggatgtcat tggatagcag agcaaagagt caactgcact gctccactgt caggcaccaa
      781 atgacatcct gcactaacc
//
LOCUS       KCOD01000875             738 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 97668pyr ultra-conserved element locus
            uce-5845, sequence.
ACCESSION   KCOD01000875
VERSION     KCOD01000875.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 738)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 738)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..738
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="97668pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>738
                     /note="ultra-conserved element locus uce-5845"
BASE COUNT          249 a          135 c          142 g          212 t
ORIGIN      
        1 attttcatag gagctacaca atttgcttgg aagcagtttt cttttagaga ctattccaag
       61 aaaacaatga agctgcagag ttacatttgg gggtgtctga tagcctaaat atggccatgc
      121 cagtgcttaa aaatcataat cacttcaccc tgaacgtagc tttggaattg cttgaatcta
      181 taataaagca aagcgaagct ttctattaaa aaaggagcac ttacctgtaa tcatagttag
      241 agctgataga cttgctaagg ctgggatatc aaggttaagg ctctttaagt ttaaggaaaa
      301 gtctttaata gagtcgagcc actccccaaa tccacgaagg cactgaagtc tatgaagcac
      361 gagtccattg cagaatacaa acttatcctc agcagtatca gacctcaaat aaaaacaatt
      421 gaaaaaatta taaatgcatc ttctacttta cagccaaatg cataaccagt attgaagcgt
      481 ctgtcattta aaatccaagg catattatcc tgagacatat gtgggcattc acgtttgaca
      541 atatgtttct cccttggggc caaagtacaa caaacaagct tctatgattg cttacttggt
      601 agagttataa gcctgaggtt agctgtagca tgtggtgtag actgtctaat tagttaagat
      661 tttggtcctg cccaaaggca taaacaaaga agacattttg cattaaatac tgtatgtttg
      721 aaccaaagga atactaag
//
LOCUS       KCOD01000876             570 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 97779pyr ultra-conserved element locus
            uce-4395, sequence.
ACCESSION   KCOD01000876
VERSION     KCOD01000876.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 570)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 570)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..570
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="97779pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>570
                     /note="ultra-conserved element locus uce-4395"
BASE COUNT          171 a          118 c           96 g          185 t
ORIGIN      
        1 tttttacatt tgctgatagt ctatgcaaat gttccacaat attgcatctc aagctgttac
       61 aggtacaaac tatctaggta tttagatact acggtatcta ataggatgct atcaatcttt
      121 tatagtaagg gaatacataa attataaaca aatatgtcct ttggtctagt ggaacagcat
      181 aatgatcaaa gacacacaat agaaatgtat ttgcttctac actaagcttt attccctcag
      241 tgctcagtct gtagtgatgg acaggcagtg agctgtcagt ttttgttctg tctgtcacac
      301 tacacttacc tcctgttgtt ttaagtaatc aatatggggg ctgaaatcac ctaccactac
      361 ctctggtacc tactattttg tccactcata aattatgaat ccctgcacaa cgtcaagtct
      421 acaatttcga ttgcatttgc taatcattga tcaataattc aaaagcctct tcttcttcaa
      481 gggtccctag tttcctggaa catatggcat aaggctgaca gtgctcacaa aactcttccc
      541 ggaaccaggg aaaacaagtt gttgaaagtt
//
LOCUS       KCOD01000877             674 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 97891pyr ultra-conserved element locus
            uce-6954, sequence.
ACCESSION   KCOD01000877
VERSION     KCOD01000877.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 674)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="97891pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>674
                     /note="ultra-conserved element locus uce-6954"
BASE COUNT          126 a          190 c          228 g          130 t
ORIGIN      
        1 acgcctcgct gggcagcggc aggtgagtct tggaggagct gttgcagtgc tggacctcga
       61 tgatctccag ggcggtcccg tcctggccct gccgcaccgc gccgttgaca caagcgccgg
      121 gcttgggctc tacagtccgc cgccagccct tgccgggctc cccgttgcct ttcttcacgg
      181 tggccggaga gagggtgagg caggtgtcag cgattttttt cttctctgct ttcttgactg
      241 tcttgcggat cctaaagcgt gccgccttga agatgcgacc gtagagcacc agcatgagaa
      301 gaagcggaat gtagaaggcg ccgaaggtgg agtagatggt gtacccgtgg tccttgctga
      361 tagtgcaggc gtcggggttc gagcggtcct ccggagtcct ccagcccagc atgggcggga
      421 tggatatcaa gaagccgata agccaggtca ggctgatgag cacggccgcc cgccggggag
      481 ttcgcttgtt aacatagtcg atggggtccg tgatggccca gtacctgtcc aaggcgatgg
      541 cgcacaggtg caggatagaa gaggtgcagc aaagcacgtc cagcgagatg aagatgtcgc
      601 aggtgacctg ccccagcgtc cacttgttca gcacctggta gagggccgcc atgggcagca
      661 ccagcacgga cacc
//
LOCUS       KCOD01000878             799 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 98002pyr ultra-conserved element locus
            uce-4638, sequence.
ACCESSION   KCOD01000878
VERSION     KCOD01000878.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 799)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 799)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..799
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="98002pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>799
                     /note="ultra-conserved element locus uce-4638"
BASE COUNT          238 a          158 c          129 g          274 t
ORIGIN      
        1 gtgcatcagg caggacatgc acccctagat gcacagcgac atccaagtca ctttttactg
       61 catttgatcc agtgagagca gtgagttttg tcagaacgat attcaagagt cttctcatac
      121 cccactttgt tttgttggca tatatttcca agtacaaagt gcagtccatc acaataatat
      181 tttcaataaa atttcaagaa aatgagatga taacaagacc atgatatttt aaattgaatg
      241 aatttcaaga tagttaagaa ttagactccc agaggaatac tttatgtcac aagctatgaa
      301 cactactgtt taatgtacac tcatgctcca tctgtttcct tttccattat tcgaatctcc
      361 taaccagttt ctcatgcaca cttttcagct ccatgctgtg ttttctattt attgaataca
      421 tttctcactt caacattttt ccacctgagc tggcagttgt ggcttttatg gctgtacaca
      481 tgcaggtctc cgtagattat gaacttcata ttttttcatt tgcctcatgc ttcagttctc
      541 tagcttagta ggccctaaaa tgtgcaaatt gagaggtgtt ttgaagtaac cattgctatt
      601 ctaggccatt gacttgtcat caattagatt aaaacattgg tttacaaaaa taatgttttc
      661 tctttacttc ataaaaaata aaacacttgg aaaaggaaac ccagctgtgc taagaggcaa
      721 attactttat gtgagtaagc aaacattttc tggtcagagc tacaatgtat tattcaggtc
      781 cattttactg catcagttt
//
LOCUS       KCOD01000879             648 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 98114pyr ultra-conserved element locus
            uce-2551, sequence.
ACCESSION   KCOD01000879
VERSION     KCOD01000879.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 648)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="98114pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>648
                     /note="ultra-conserved element locus uce-2551"
BASE COUNT          223 a          120 c          110 g          195 t
ORIGIN      
        1 ataagctggt ggtccaattt ctaactgaat tcataacgta ctaaccaaaa tttacagtcc
       61 ttttttttta ttcattacca ctctgacaga gatgttctaa atccagtcac tgtctaaaag
      121 gatgcagtag aattttaaaa taatataact aatatgagac cctaaattgt aggaattcca
      181 tttacaggaa acctagaaaa cagaagtcgt taatttataa ggaagcacag aacaaaggta
      241 aggcacttgc caacaatagt ttgttggttt aactttgact tgcttccctg ggaaagaaga
      301 aaacagaatt ttcaatgtga actgtcagcc ccacttatga cagggcttca ctagttagaa
      361 attcagagtt cctcctccat tggcagaatg atgtaaagaa aaccaccaaa caaaattctt
      421 tcaagtttca actacaactc tacttaaata atttactttt tagttttact cagactattc
      481 tttttaaact tggttgacat tttcgttgac aagcacattt tattgcacaa gatcagtagt
      541 ggaattggca gtgaaaaaga gagagctggc tctactcaat gagagaacta ctatcatgcc
      601 tttgggaaaa acagtgctgg cagtgaccct ttctgaagcc agcaataa
//
LOCUS       KCOD01000880             457 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 98223pyr ultra-conserved element locus
            uce-8016, sequence.
ACCESSION   KCOD01000880
VERSION     KCOD01000880.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 457)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 457)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="98223pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>457
                     /note="ultra-conserved element locus uce-8016"
BASE COUNT          131 a          111 c           74 g          141 t
ORIGIN      
        1 gatctgccaa acctatggag gaacctcaac acaaggaaca gtaaaataag gtgaagtttc
       61 catcaacacc aaataaaatc catgattgcc taatcttagt gaacttcttt tcatattctg
      121 aacacaagaa aagataccct cgcgtcctta ccctgtgatt tcctcatgtc ttttgtggct
      181 aaagcacgat tcccatgcgg aacactggta aaatcaggat tggtcacatt gttaactctc
      241 agctcttgcc ccaacgactt ccgaccataa gtattttccc cagatcctcc attgacactg
      301 tagccacctg tggacaaacc aattagcagg atggtgtgtg agttattcaa aattagcagc
      361 ccctttagct tcctttttca cttccacatg taagtttcca ggtcacattt agaatttcat
      421 cgccatgaag tttttttgtt gcatttatta ttattac
//
LOCUS       KCOD01000881             424 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 98334pyr ultra-conserved element locus
            uce-1351, sequence.
ACCESSION   KCOD01000881
VERSION     KCOD01000881.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 424)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 424)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..424
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="98334pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>424
                     /note="ultra-conserved element locus uce-1351"
BASE COUNT          143 a           84 c           62 g          135 t
ORIGIN      
        1 caagaaacgc tgaagttcag gaagaggaaa tgtgtattaa gagagcaggt taaaaatcta
       61 cattatccca gactttcatg aaatcaaaat gataggcacg atgctaagtt attataatgt
      121 atttattacc agaattgctt tcatatttaa ctgatttggc ccatcttgag acctgtttta
      181 aaatgcacca ccttgtccac ctttccattt tcatatgaaa aacaggaaag caaaaactaa
      241 tttactcagg gagacacatc gactgtttgc ccgtttatct cttacagacc acccctcagt
      301 ccaatgttga cagtacatga tattccatta atctgcctaa tgaaaattta accagtgtta
      361 taaacaaata attggctatt atcctctcaa agatcccgaa taaattactt ctgcttattt
      421 tttt
//
LOCUS       KCOD01000882             820 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 98444pyr ultra-conserved element locus
            uce-2016, sequence.
ACCESSION   KCOD01000882
VERSION     KCOD01000882.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 820)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 820)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..820
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="98444pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>820
                     /note="ultra-conserved element locus uce-2016"
BASE COUNT          244 a          129 c          173 g          274 t
ORIGIN      
        1 tgagaatgag gcagcacttc aggaatgaaa ggatgaaatg tgcagtatga aaagtgataa
       61 taaataaatt gaacaaagct gtgtgtactt ttgggttatg actagttgaa gtgcagatta
      121 aaagctctga actgatgcat gggaaacaaa aatactgaat tcattttaat cctctggtta
      181 aatgggtgtg ccttcacttc tgggtctaga aataatcata cttgtatcaa tctatattgt
      241 gtgacttttg taagctgtga aaatagtatt tttcactgaa ttgtcactta ttattgttca
      301 tttgtggcca ctaacataga aaaatgttgc agctacaatg tcagaagaat agggacaatt
      361 tgatgttttc ttttgatgct gtttgttgat acctagacca ctgcagcttg attgcctaac
      421 attaaaccta taataacagt gcaatcatag cagtatcatc atgaatgtcg ttacaataga
      481 aacaacattt acacggcttc agaatggtaa ttatcaaact ttttgtcatg aagcgcttat
      541 ttgctagcat tgatctgccc tggtcagttg ttagctcttc tcatctgagg tgtattgatt
      601 gtataatcag tagatagagg ctgcgggcag atgaaattca gtgttgttgg gcaaattatt
      661 gtctgcttgc ctgttgacct ggaccctgct ggttgtacct tagacagtgg tgggattatt
      721 actcatttca gtgaccctac tctgacagag aactccatat tattataaaa gataaatggc
      781 atccttcttt actgtagata tggttgaatg caggtgtcag
//
LOCUS       KCOD01000883             666 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 98554pyr ultra-conserved element locus
            uce-2775, sequence.
ACCESSION   KCOD01000883
VERSION     KCOD01000883.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 666)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 666)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..666
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="98554pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>666
                     /note="ultra-conserved element locus uce-2775"
BASE COUNT          198 a          106 c          109 g          253 t
ORIGIN      
        1 ctgtctgcaa acttcgctat tgcacacatc acttcatatg aagaaaaatg tgtgatgcac
       61 ttattgacag agaaaaacca ataaatccaa tttgattcag gaagctgaga aatattttaa
      121 taactttctg acgttttcct gtagtcctta tttaccttat caatagttat ggtgacatat
      181 gattgtcaac tttttatatt aaaccaaact aataaattaa acatgttgtg tttatacctg
      241 atgaaagctg acgttttgga aaggtgttaa aatatactga caggtcttgt tcataaactc
      301 ctttggtata aatatgtaga tgacatcttt agatattgtt tgtacatagg ctgataggca
      361 ggaaacgttg acaacgtaac aaatgcaaat gtcaacccca caatttaacc tttctgtgta
      421 ggaaaagatg ttagttttaa gttacatgta tcttttaact ttattttcaa agtttttttt
      481 cagcctgtta tcgttgctgt ttcatgtgcc actgaaagta acactgcaat aagaaagatt
      541 tgcacttaag agcttttctc tgtggtgttc ctacttaaat gactatggct gagagggttt
      601 ttttctttta attctttttt ttttcatgtt tgccttgtac tttctgaatc tctctgcagt
      661 attatc
//
LOCUS       KCOD01000884             705 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 98665pyr ultra-conserved element locus
            uce-5947, sequence.
ACCESSION   KCOD01000884
VERSION     KCOD01000884.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 705)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 705)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..705
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="98665pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>705
                     /note="ultra-conserved element locus uce-5947"
BASE COUNT          195 a          158 c          149 g          203 t
ORIGIN      
        1 gaccaattca acagcttgct tttaagtttc ccattgacag ccaaactgca gggtttagtg
       61 ctaagctcca cattgcagct tatctctcct taattaaaat taaaatgtga gcaacaacac
      121 agagatattt tgcagcatcc tggaagagga gaaacagaag ctcgagtgat ggttgtttaa
      181 taagattata attggagagt taaagccttg tgatctatgt gaaaactggt ttggtgctgg
      241 tgcggctccg tggcaggcga gccccaggtg cctggccaag catccctcgc cgacatctgg
      301 aaccagttgc aatacatcac tgtcaaaact gctttctata cgtatctgca tttacacatt
      361 agttactcac gcagcactca tcaaaaaagc tgaacaatct tgacacggtg tccctggtgg
      421 aacggcaaag gtgaaccgaa gttgggaggc agtgtctcgc gtcactgtct gctgagcttt
      481 tacaacagga agcctgatta aaactgaaag gaaaaattta tcgtcagctt ctgctttgta
      541 tcatttttac ctacaaaaag agtattttgt ttcatacaaa gcagttgata gtgaggccag
      601 aggtgctctt cactttcatc actatcttca ctgctttggg tgcctgatta tccacagaat
      661 tccctctttc ttgcccagtt cttgctctga attacagaat ccatc
//
LOCUS       KCOD01000885             709 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 98774pyr ultra-conserved element locus
            uce-5827, sequence.
ACCESSION   KCOD01000885
VERSION     KCOD01000885.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 709)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 709)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="98774pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>709
                     /note="ultra-conserved element locus uce-5827"
BASE COUNT          199 a          160 c          144 g          206 t
ORIGIN      
        1 attttaggaa aacatggtct tttcagccat ttctctcttc cctgcccagc ctcaactccg
       61 agcccccata tcctggactt tgctcctata ctgatggtaa agattgtttt gtttctgttt
      121 cccctaagaa aggcaaaaag gttagtaagt ctttaaactc gcagttctta aggctgttaa
      181 tatttcacat tgccagcagg gaaaggaatt aaaactgcca gtagctatcc agatagattt
      241 taaaaccccc ttccctcccc cttctctctg cctccctcag cttcagagga tattttcccc
      301 gcaaattggt tttaaattaa ggaaggtgat gaaggcaatg tgccgtctca gcattttccc
      361 aggtgcactt aatctaattt cattaaggag atcaggacag atgatcgcta cagtcgaaac
      421 attaagtctg tccatttttg tataaaaaaa ccattaagtc tgtcaaagtg tcggcgggtg
      481 ggctgtttat tattggagat gaaggcgcgc tttgcttccc caataaactg tcaggagtag
      541 taaaccacaa attaattcag ctgctgccaa agatttaggc aaacatctcc aactaatttt
      601 gacacaggtg tggcaaaggc caaactgtgg aaaccaagcc tgtttgagat atttcaatat
      661 gaccactgaa gagtggaaga ctgggcatca gtggccgatg cttctggca
//
LOCUS       KCOD01000886             413 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 98883pyr ultra-conserved element locus
            uce-1039, sequence.
ACCESSION   KCOD01000886
VERSION     KCOD01000886.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 413)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 413)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..413
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="98883pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>413
                     /note="ultra-conserved element locus uce-1039"
BASE COUNT          147 a           69 c           55 g          142 t
ORIGIN      
        1 accaatctta tttttaattt gtatgggaac aattttacca caaattccat attttaataa
       61 tactatccca actctatttt ttaaactcat tttgtcactg ttttgtaaca gaaacactgt
      121 aaatattata gatgtggtaa actattatac ttgttttctt ataaatgaaa tgatctgtgc
      181 caacactgac aaaatgaatt aatgtgttac taaggcaaca gtcacattat atgctttctc
      241 tttcacagta tgcggtagag catatggttt actcttaatg gaacactagc ttctcattaa
      301 cataccagta gcaatgtcag aacttacaaa ccagcataac agagaaatgg aaaaacttat
      361 aaattagacc ctttcagtat tattgaatag aaaatgactg atgttccaag gta
//
LOCUS       KCOD01000887             695 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 98993pyr ultra-conserved element locus
            uce-4725, sequence.
ACCESSION   KCOD01000887
VERSION     KCOD01000887.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 695)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 695)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..695
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="98993pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>695
                     /note="ultra-conserved element locus uce-4725"
BASE COUNT          186 a          157 c          112 g          240 t
ORIGIN      
        1 ttattcactg agcagcttct aaaaggaaca tattaattta tttcagcagt tcctcaaggg
       61 aggagaacag ttgttaatga tcagtttagg caacacacat gaccaccttg aaaagaacaa
      121 acactaatta gtatcgccta cgattcctgt ttccaaacca cactttttaa cctgtacacc
      181 caatcttttc caatatttcc attaaggctg tcaaaagcag aagtttggga acctttgctt
      241 gtgaccttgg catttcttct caggcttaac gtattggcat tttttcctct gactgcatcg
      301 cttctcattt gtcatgatta ttgttgaatt tttcaactgt cattcccgaa cgtaaatcaa
      361 tggttgtcga cttccccttt gtcatatctg cactgccaac agcctttccc ttctaaatga
      421 ggcttcctcc ctttccatcc attaaaaaag gcctgtcttt tggagaagtc aatcctttgt
      481 taggtcactc catttatcat tcttccaatc agtacctgac atacttattc agccaggtct
      541 tcaaccacac aatcattgtt cattttgaga gagagagaag gggatacttt atttatgcat
      601 ggtgtttttt gccatttatc ttgaccagtt ttatatccct tgtatcttta ggggtcctta
      661 cttgcttgaa ggaaacacca aattgagtag aataa
//
LOCUS       KCOD01000888             475 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 99099pyr ultra-conserved element locus
            uce-6659, sequence.
ACCESSION   KCOD01000888
VERSION     KCOD01000888.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 475)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 475)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..475
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="99099pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>475
                     /note="ultra-conserved element locus uce-6659"
BASE COUNT          122 a          107 c          122 g          124 t
ORIGIN      
        1 tttttgccat gtggacttac ttgaacatgg gactaaatgt attataaaat acatttgtga
       61 cacatggagt gttttcagaa tgttgtgctg cagcagagca gttggctgag cttgttcagg
      121 cgtaccaacg tttacaaatc cagcagcaga tgttacaggc tcagcgtaac gtttccggac
      181 ccatgagaca acaggagcag caagtaggcc ctgccagctc aatctgtgct ttagagtttg
      241 gtttcagtta ccaaagcagc taaagcatcc ttaatgcagt gcgagcgccg gacaggaagg
      301 tgctgctcca ggccttgctg gaggaaagct gttcttattt gtaaggattc actgtagaga
      361 aatgtgttgt tttttgtgga ttgacactct gcaggttgca cgtacaatca ataacatgca
      421 gcagccagca ccagcgccag ctggcccagg ccctgcttat gaagcagcag cctcc
//
LOCUS       KCOD01000889             798 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 99203pyr ultra-conserved element locus
            uce-5864, sequence.
ACCESSION   KCOD01000889
VERSION     KCOD01000889.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 798)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 798)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..798
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="99203pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>798
                     /note="ultra-conserved element locus uce-5864"
BASE COUNT          232 a          139 c          165 g          262 t
ORIGIN      
        1 taattcctct ccaactggca ttattatttg attgcaatga attacctttt taaaaaaatc
       61 ataagtataa attcacttga ctgatcctgc aaattattta tgatgtagtg ttttggtcta
      121 ggataacctt ttaaaataaa tcagtttttc aataatagtt caatgtttgc ccacctaatg
      181 gtgttcccat taagatctgc atttgtcacc aacctgcctt ttccgcctgt gcaggagaca
      241 agtcaccgcc cctaaaccca ctctgcttgt agggtaaagt aaatgcatgt ctttgtagga
      301 gaataaataa aaagagcaag ctgagtcaat aagcgggttc aattcctgcc tgcagccatg
      361 gcggacagct catttggtag atgtgggtgt tttgtttaca tttataatgc agctttattt
      421 aatgctgaca gatatagctt gtggcaaatg atagtcagaa tgtatgagca gtcataatgc
      481 ttctgtcttc ttatagtgtg ctgctgaaaa taagcagttc acctctgttt ttattgagga
      541 aaggatatga gacagctata gcttcgcgag gctatttatt gagttgtttt actagctgtg
      601 aacatgccgc tttatagcag ttgtgaaaat ggactttgct agtgtgtggg aaaggaaata
      661 acattgcagt atacaagggt agtaaaaaaa ccctctataa ataatttttc agactgaaga
      721 atattctcat ttaagcagct agagagcctg gtgatttttg ccagctgcca gctcttcccg
      781 ggatggcatt gggttaaa
//
LOCUS       KCOD01000890             434 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 99312pyr ultra-conserved element locus
            uce-3503, sequence.
ACCESSION   KCOD01000890
VERSION     KCOD01000890.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 434)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 434)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..434
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="99312pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>434
                     /note="ultra-conserved element locus uce-3503"
BASE COUNT          168 a           59 c           78 g          129 t
ORIGIN      
        1 ctcaactaat atagtaatca aataaacctg acaaataact tttttaaagc tgcagaggca
       61 tgctaacaaa tctatttgat caatatatgg gatgtgaaaa aagaggagac aagattgact
      121 gatgaataaa atggaactga cacaaatagg ctgacagcca gtcgcaagtc tctttagggc
      181 aaatgcaatt aacttagaat aatagactca aatttgatgg ttagaaatgc atttttatta
      241 acaatcacag cctgaatcat tatgcactct tatgaataaa attgtagtta tactgaaagt
      301 ctgtgtatac atgtatgcat gtacgtgcct tgttgaagga gagctttatt tttgtgacag
      361 aatggttgtg tgggatttaa aatataaagc atacacaagt ataaatctaa atattcaaac
      421 cagtgatata aaaa
//
LOCUS       KCOD01000891             632 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 99419pyr ultra-conserved element locus
            uce-2195, sequence.
ACCESSION   KCOD01000891
VERSION     KCOD01000891.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 632)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 632)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="99419pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>632
                     /note="ultra-conserved element locus uce-2195"
BASE COUNT          183 a          131 c          148 g          170 t
ORIGIN      
        1 acatgttgga aaggagccac caagagaatg ggcacctttc cttgggagat ccttccagag
       61 cagccagcag aagctgagaa cttcccttcc tcccctttct tcacctgcta agtgcccaca
      121 ctgcacacct ctctgagctg gggttccttc tgcactggtc agcctctggc cagaggacca
      181 ggaacaaagg cgcctttttg aacattgcat gtgcaaggat gggaggagga ggggagggga
      241 tgggggaaga ggagaggtac agacacagca ctccttggca gtgatttata gactgggtca
      301 ggcacaaatt gactcgtatg caagaaatgt aaatggaatc gagacttttg atggagaagc
      361 tcattttcag acttaaacgc tttagattaa acacactcac acacaaatgc tggcggggag
      421 ggtgttttat ataatttaca ttacaaatca attcattatc cacagaggca ggttgcactg
      481 attttcaagg atcggagatt tgatgaagag gattcatttc aagaaataaa ccttttaaat
      541 taaccgcaag atgagggaaa tttctttatt taaaaaatgc accagcccct tctttgtttc
      601 ttttattatt attaatatta ttttccatcc gg
//
LOCUS       KCOD01000892             767 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 99639pyr ultra-conserved element locus
            uce-943, sequence.
ACCESSION   KCOD01000892
VERSION     KCOD01000892.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 767)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 767)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..767
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="99639pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>767
                     /note="ultra-conserved element locus uce-943"
BASE COUNT          223 a          113 c          150 g          281 t
ORIGIN      
        1 taaatcctaa aagcaccact attttagcat aataaaagaa agtccaaaga gctcctatat
       61 agactactcc agataacttt gcttcatcgg tatttgtagc ttattgtaac ttttttaaag
      121 aaatacagga tcatcatcat cgtattgtac aaaagcgctt tgattaacac aacggctata
      181 tagtttttta attttaggaa aaacctgtgg agacagtgaa ctagtcttta agagtccttt
      241 cagtataatg tctgactaaa gacatggcct ttaatatctg ttgggaagga aatgtccaga
      301 cttttcagcc ttttattgta tgtttccttt tccttgttta catagggaac aatgtttata
      361 gttgtgtgta cagtgggggt ctacaacaag aagtgtatat tttaaaacaa ttttttaatg
      421 atttaacaat tttttgtaaa tcattttcgg gcttctgcag ctgtagattc tcactgtgaa
      481 ttcccttgct tgctcatgca taagtgtatt tgcaatacca aatatacagg tttagtactt
      541 ttgcctgtta gtgattgttt tacatgtgta acgttttggt tgagatgtta aatggtggaa
      601 gagtactgtg gatgtgaatg tgggaagtaa ttttaatcat gtgtaattgg tcacagggcc
      661 taagttgcag taattaactt tcgctgattt atttaacaat gccttgttgc tttgtatgca
      721 ttaacgtttg ggtgtaaaga ttgtgtgtat atccaacagg gagccac
//
LOCUS       KCOD01000893             653 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 99749pyr ultra-conserved element locus
            uce-1389, sequence.
ACCESSION   KCOD01000893
VERSION     KCOD01000893.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 653)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 653)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="99749pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>653
                     /note="ultra-conserved element locus uce-1389"
BASE COUNT          237 a          105 c          118 g          193 t
ORIGIN      
        1 cttaattgag gaatttaaaa acaacgactg aaaagagcac aaatttcaaa gtaaatgaaa
       61 tatggagacc ctttgaaacc caaactttag tgacagcccc tacagagagg ctattttctc
      121 aaaacatgta aaatatgact atagaaagaa agataaggag caggggaatg gcgtgtattt
      181 aaaaacacat gcacagcgcc tggtgtttta acttttgcct ttctatagct aaaatatcaa
      241 gtccataaaa tttcagatag tgtgcaaaat gtttatatat taccaaggtc tccctttaaa
      301 aggtttatac ttttacttta tgacctgtcc ttgatttgac acttccgctc atcagaaagg
      361 gatttataaa ataatcctga aggtgaggaa cagacatctg tcagggactg gctgagtttc
      421 actttgcgaa atttaagaag ggagagaaat cctgttaagc tctctttagt caccaataga
      481 catcaaaggt aataattaaa gaagacagac gtcataaaaa taaatttatg tagttcttta
      541 taatgcacaa gcactctagt gtgtaaaaca tctattagag tgaaagaaaa tacaacattc
      601 caaatgagca aaatctgttt tgtttgaggt tttttgccta cttgagtaac gtt
//
LOCUS       KCOD01000894             659 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 99857pyr ultra-conserved element locus
            uce-3713, sequence.
ACCESSION   KCOD01000894
VERSION     KCOD01000894.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 659)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 659)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..659
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="99857pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>659
                     /note="ultra-conserved element locus uce-3713"
BASE COUNT          247 a           90 c           90 g          232 t
ORIGIN      
        1 tgtacagcat gtttacttaa atatttaact tgtgaaattt aataaaataa caatttaaac
       61 agataaggat taaaaaacta ttagaaacat tcacataatt aaaaattaaa attctcagcc
      121 attatcagat gtaggaaaac cacataagaa tccataaaaa agttttcaag ctccaataag
      181 ttaggtataa tagacctttt ttgtcaaaca caaaaataaa tatcattgat tttatgaata
      241 aatacatttt cttaaatgat ttagaaagct ctgtttattc atatacagac agtgtttaga
      301 atatgtagta gccagtatgt ctgcagatat atttatgttg gactgtttag attggcttca
      361 cctctgtaat aatttataac agtttcaatg taaacctgcc attgagcagg tcataaaggt
      421 cctgcatttt aaccatcata atttcagata aacccacaaa actatttctt gcaggaaagc
      481 tctagttaat ccttgaatat ctttgggatg gaatttgttt ttatttaggc aaatttaaag
      541 agcaataaag gctgcatttt aacagtgttt gatattccag tagtggtgat aatttaaaat
      601 ataaacattt tgttttgttt tacagcagta actcttcatt gacacttatt aatacaaaa
//
LOCUS       KCOD01000895             523 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 99963pyr ultra-conserved element locus
            uce-1361, sequence.
ACCESSION   KCOD01000895
VERSION     KCOD01000895.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 523)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 523)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="99963pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>523
                     /note="ultra-conserved element locus uce-1361"
BASE COUNT          184 a          110 c           80 g          149 t
ORIGIN      
        1 cctagagggt atgtaaaatt agagtactat tttgatgact ctggaaagaa ggaaatctcc
       61 ttctccttgc tgcaaatgtg ttcagccaaa tgttgattgg aacagaaagg gttaccatac
      121 ctctcaggac attttgataa gatattttaa taccaattta ttaaagtacc agcatactag
      181 tgatattgct gcaattcatt gtacctagaa aactcagcat tttatagagt tctaaggcag
      241 cccaataaag actcgctcca ctctaataaa gcaatactcc gggcaaattt acggttgagt
      301 tctattctaa taaatctcca attgtaaact aatgaaaaga ccccagtata cctccctcat
      361 ccactcacac aaaaggaagc aatttgaaaa tgtttgacaa agtaacactg cacatcatca
      421 gcactgaaga acctcatttc ccgtccatgg agatattgca ttatcattca tattaaagaa
      481 taacccaatg gcacttattt tcaggaaact aaattaccac aca
//
LOCUS       KCOD01000896             502 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 100072pyr ultra-conserved element
            locus uce-180, sequence.
ACCESSION   KCOD01000896
VERSION     KCOD01000896.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 502)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 502)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..502
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="100072pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>502
                     /note="ultra-conserved element locus uce-180"
BASE COUNT          181 a           90 c           83 g          148 t
ORIGIN      
        1 ttgaattata ggcttttctt tacctgttgt agtatgaaca ctacctacct tctaaacacc
       61 actacaaagg agatcaggca tgaaatggtc ataagtatta gtttccagta gatttcactt
      121 ttctttttca agctacagct tgacattttg caaaatctct ggagaccaaa cagtgaaatc
      181 gagttactgc aggagtgaac tgtaaattcc atgaaaccat gtaatatatc ttaacacaga
      241 tggacacagt acattaaaat aactgtggat gataatagaa caataccatc tgttttgtct
      301 ggggaagaca acgcacatca gctacactgt cagtcatatc atatatcttt agtgtcatca
      361 tgtggtagac gacaactcta tatgtcagac caagtgtaca cttctttagg gattactgaa
      421 aacagtaaaa agttaactgt gaaaaagaat tcataaaaat acttaaacat aagtctagta
      481 cttaacaagc agacaaatgt aa
//
LOCUS       KCOD01000897             593 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 100178pyr ultra-conserved element
            locus uce-6502, sequence.
ACCESSION   KCOD01000897
VERSION     KCOD01000897.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 593)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="100178pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>593
                     /note="ultra-conserved element locus uce-6502"
BASE COUNT          208 a          111 c           90 g          184 t
ORIGIN      
        1 cagtggcaaa agttaaaaag gtaacatgaa aagaaagatg aaaaaggaat gctgttcaaa
       61 ttgaaggact gcagtttcaa gtttcaatcc tgtatcaaaa catctccgcc tcatcttctt
      121 tctcagtcat cacaaatgaa atagtacaaa gaagtacaca aacatcagta caatgctgtg
      181 tgtgtactgc tatccaaaaa tcacagttac aaaattatac ctgacatatc aaaaactgac
      241 agtcacatcc tcaagatttt cttctgttca ttcccatgga ccttctttat taataaatct
      301 gacacataaa aagcatctgt atgactaaag tgtcagttac tggaaagacc gttttgatct
      361 acttcttaac ttttagaaga aatattctct tttttatgaa gacagaatcc gttcactgac
      421 tgccagcttt caaatgacca cctcttgaag tttaatttta agttttaaat aaatattgta
      481 tgcatgcaga ataattatga tgctctagag agactgtgta taatgacatt gattcttttt
      541 tatctaaaaa tgccaaaccc ttgaggcggc aaagcctgta tttgccacag ata
//
LOCUS       KCOD01000898             738 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 100289pyr ultra-conserved element
            locus uce-7297, sequence.
ACCESSION   KCOD01000898
VERSION     KCOD01000898.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 738)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 738)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..738
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="100289pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>738
                     /note="ultra-conserved element locus uce-7297"
BASE COUNT          238 a          177 c          129 g          194 t
ORIGIN      
        1 gggacccgac tataggaatt cttatcctat ataaagctat gtagccttgc acaaatagcc
       61 tttggcatct tgtctctggc ctacctggac agtagcaaaa catgtttatc agaccataca
      121 aaatctgaac tgcaagcagt tactgaaggt cgctaaactg caaaattcaa acatgcttct
      181 atgctttagc cacacagaca acaataaaac aaagcctcca caaccacctg taataatatg
      241 cctattcagc cagcaattcc aaagtactca gcaacacaag gtagacattt tctgcagctg
      301 gttttacatg tacattcctg acaaattgtc gtcttgtccc ctcttacctt cacattagtc
      361 cggagtgcac agtaacatgc aaaaaacatt gcagtaaaca aggagcatat ggaccagtat
      421 tcagcgtctc tgctctgcac aaacggtaca cacacgatcc cgagcatgtg ctactaagga
      481 gcatccgttc cctctgtcag tttgaaaatg cattgatctc tgtttttctg actacaaaaa
      541 gacatgtctt gaaggcacag agtgaaagct acatatctct tcagcaacca tatatagaaa
      601 catgcccagt aatttcaatt agcagagaat tcagcatctg aaacttggac ctcagttgct
      661 tttccttcca gcattttaaa ttcagaactc acccagaggg gaaaggtgag aaattaaaac
      721 gtaagcagtg agttactt
//
LOCUS       KCOD01000899             818 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 100399pyr ultra-conserved element
            locus uce-6260, sequence.
ACCESSION   KCOD01000899
VERSION     KCOD01000899.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 818)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 818)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..818
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="100399pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>818
                     /note="ultra-conserved element locus uce-6260"
BASE COUNT          249 a          175 c          126 g          268 t
ORIGIN      
        1 gcctcgtgca gtgtaaatca aattcttcct taacaaactc atataagtca aataactcag
       61 ccttcgttat gaaacactgt agttgcatga tctcataacg taaacattta cataactggg
      121 ttattcacag atgaaaatca aatccatttc agttcagata atcattctgc attaggaaaa
      181 tgaataaatt agaagtatgc tccagcaatt tactcttccc aagcagctat cctgcacgct
      241 ctgcagagga tgtcaaaacc tgctgatatc tagcagagtc aactccaagt ttgtgtatcc
      301 cggtccattc tacctttcca tcaggcagta catgtggaaa tggaaaaata gctctctaat
      361 taatcaaagt cagatctgcc tgaatgcctg gagttgctgc tgatccttgt cccagcttct
      421 accatgttct ctctctatgt tttttacctt gaaaacttct gctctgagct gggaatgcct
      481 gaagggcttg cacggtaagt caatgtgaaa ttatctcagc aggaagaagt tgcttttcag
      541 cttaaatgat ttaaggcagc aatttttcac actctcaaac tctgacaaac gcacagattg
      601 cctctcatgt ttgacttcaa aatattcaaa gaaaagctat ttttattaaa aacactctag
      661 agaaaattgt atgtcacttg ttctctgata taacttcatt tctcctgaca gtgacaattt
      721 tcacctcagt acaatttctt tatttttttc caaagctaat tctgcttaat attagtattt
      781 atacaaactc atatcaactt gtctctgtga aatgttca
//
LOCUS       KCOD01000900             817 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 100508pyr ultra-conserved element
            locus uce-7764, sequence.
ACCESSION   KCOD01000900
VERSION     KCOD01000900.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 817)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 817)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..817
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="100508pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>817
                     /note="ultra-conserved element locus uce-7764"
BASE COUNT          217 a          186 c          189 g          225 t
ORIGIN      
        1 aatcaaagtg aagagattct ggtagtgcat cttctgctaa aaatctccca gtaatttcat
       61 ctctcagcca ggcagacgac ccaccataat caattccgga tgtgtgggac agcctgggaa
      121 tgttaggtca tggtgagcac cattccactc tgtgtctctc tttaaagggc cacctaaaag
      181 gccccagact atggccacac aatcccttct tgcatccttc aattgagagt atcagggcct
      241 atacagtgct ctccagcgtg cttccccttt aagacaggac tgtgcagtct ttatttgctt
      301 gttgaaactg ttcagtttta ggacaggggg ggaggtcaca cctgttgtgg aacttgatag
      361 aaggcttatt tataaacttt cagagcttgg gattcttgca gagctgaatg cgctgatgtc
      421 cggaggggaa ggtcaccgaa atgcttgttt ataaaagcag cagcaactgg aaaaaccata
      481 aaagtctgaa atgatgaaat taccaagcta tttgatcagg cgcatgggct atgtgctctg
      541 tggtcagcca gaaaaacctc gcacgtaaga gtcaaccctg ctggctgctg ccctgaattc
      601 tccttcagag gcgaatgcag tgtgcctgaa gagggcaaaa aataatcagc tgcttagtat
      661 ggtctacttt tgggttgctg gctggtccac tcttaatttg accttgcatg gaaaggggaa
      721 agcctactct gcacttggta tcacagctaa tccactcttt agtttcacaa cttcaaagag
      781 ctacaccact tgttaacatt cagaatgttc ttttagc
//
LOCUS       KCOD01000901             572 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 100620pyr ultra-conserved element
            locus uce-2370, sequence.
ACCESSION   KCOD01000901
VERSION     KCOD01000901.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 572)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 572)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..572
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="100620pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>572
                     /note="ultra-conserved element locus uce-2370"
BASE COUNT          156 a          114 c          120 g          182 t
ORIGIN      
        1 tgcgctactc taatcttaga ggctggataa tacggttgga gatttgacat attcctactg
       61 aataaaaatc aggagaccct taccaaaatt gttagcaaaa gggactggca gaactaggta
      121 cagagcgggg tggttttttt ttttctcccc ttcctttcgc tagctgtcta ggaggagtaa
      181 agcaggtggc tccccgtggc tgacttttca tgacaacatg ccattagaaa ttgcggtcct
      241 gttgatcaat ccactcgaca tgacagcttt gccgcaaggc ctggctcttt gagcaccagc
      301 gctctggctt ttccctcctt ttttcctgca ctaattggtg aaagttttta ctgtgcttgt
      361 ggcataggaa attcttttga acattgtcac aatcaagtgt tgacttcttt agaattgcaa
      421 gtaggttaag tgagtatcaa cattaatcca caaaaggttt tattaaagta aaattgggat
      481 tccgaggagt caattaaaat attgctcctt tttttgcaaa gccaaagatg ctaccatatt
      541 tgcatctcaa aaagtagaat tggttactta ca
//
LOCUS       KCOD01000902             625 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 100728pyr ultra-conserved element
            locus uce-8046, sequence.
ACCESSION   KCOD01000902
VERSION     KCOD01000902.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 625)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="100728pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>625
                     /note="ultra-conserved element locus uce-8046"
BASE COUNT          121 a          172 c          137 g          195 t
ORIGIN      
        1 tctcattggc gagtcccgtc cccaaaattc ccagctcctg gtgctctcct gtaagtgcct
       61 gctgcagggt ctgggtgtgc atcccttccc ccctcgcctg gccctgccgc actgacctgc
      121 acttagtgtg tttcactcac tgcctgatct acatttcagg gaagctgtac accactaatg
      181 gtagcaactc ttcatcctca agtagccacc atcacgccgc agtatgcggt gccctttacc
      241 ctgaactgcg cagccggccg gccggcgctg gtcgaacaga cggctgcagt actggtaatt
      301 gcctcccttg attgtgttca ctaactgagt ttttgtttta acttagaggg catggaagca
      361 tgtgccatct tgtggctgtg ttcttgctac atcttaatgt cttgttgttt tcctccccaa
      421 cattgctgaa gcactgtctg actctgacgt ttagtgtggc tctgtaaaga atccagatcc
      481 ctttgctagc ctagtattga aagctcttct aaaatagact ctagaagagt tgtaatcgtt
      541 cttgttcttc gcttactctc ctatctttgc ttttgattgt ggaatacaaa ggaatcagtc
      601 tttagcttga ctctgctaca ggtac
//
LOCUS       KCOD01000903             593 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 100838pyr ultra-conserved element
            locus uce-169, sequence.
ACCESSION   KCOD01000903
VERSION     KCOD01000903.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 593)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="100838pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>593
                     /note="ultra-conserved element locus uce-169"
BASE COUNT          182 a          103 c          132 g          176 t
ORIGIN      
        1 tgaactgctc cttcatattg gctttttaaa aaggaaaatg caaagaaagt catagtaaaa
       61 ggaagtatta aagtactttg tgagttttaa ccattttatg taaaccattc cttatcatca
      121 aagggttatc ttctgacatt gcacagggat agaactatac agtaaataat gaattgtggg
      181 atgcagccag gcttgcagaa aataactatt tgagggatgg tgcatgaaca gaaagctgta
      241 attttgacag gtggcaaggt gtcgtgtcac caagcccttc caaagcctca tatctcatac
      301 ctattgatta atggctctaa ttaaggaatg aaatcaagca tgtgaagaca ggggatcgct
      361 ttaggtcctt gtttggtagt tttctcttcc tggcgcacaa ctcatccatc taaatatcac
      421 tgctctttca tttattacag ttggatgata ccaaaaaaga actggaggag gtgcatgctg
      481 atcttgtcat ggtcatgcag gaacttgatt tggcaagagc tggggtaagg caatgtgtat
      541 gagcactgtc tgagtgaacg ctacaaaacc atttgaaccc tttgtcatgg tga
//
LOCUS       KCOD01000904             584 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 100948pyr ultra-conserved element
            locus uce-7538, sequence.
ACCESSION   KCOD01000904
VERSION     KCOD01000904.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 584)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="100948pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>584
                     /note="ultra-conserved element locus uce-7538"
BASE COUNT          161 a          103 c          130 g          190 t
ORIGIN      
        1 agagagctta cgaaagattt gctgcgctgg tctttagggc aatagagctc tttcaaattt
       61 atttagccag aggatgaaag tgaaaagtga atgaagaaaa atcaggcttt ctgctgaatt
      121 agcagttgtg tgacttgtgt ttagccttga tttaattctt atttaagatc tctcctccca
      181 gcacattaat ataatgtcaa tgtagaatgc attgcatggt gtaattactg gagagagcag
      241 tagttgggaa aacagacggt aattgaacac atggctgttt attacaacag gacagtgctc
      301 ctacgctggt atttagggca ttaataggga agaattgatt tgttgtttta agatgaattc
      361 aatcactgtt gcttaggcct ttgtttgttc aggccgagtt atgctttgtt tgtgttatgt
      421 gcccaagagg tttacacacc acagcctggc attagtcatg cagagggctt gggagcagag
      481 agccatttaa atgaacaaag gacatttttg gctctgttta tcttcctctc cagttttgtt
      541 accctctaat ctatctccac caccccaaac atttctaatc agtg
//
LOCUS       KCOD01000905             525 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 101161pyr ultra-conserved element
            locus uce-5510, sequence.
ACCESSION   KCOD01000905
VERSION     KCOD01000905.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 525)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 525)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..525
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="101161pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>525
                     /note="ultra-conserved element locus uce-5510"
BASE COUNT          151 a           90 c          119 g          165 t
ORIGIN      
        1 catgagtgtg atttactggc ctgtgcaatg ccacatgtct ttaaaattat agtgcccgtt
       61 tcctgctgaa ataatttcta catagagagg ctcctattac agcaagagga gtgtggacgt
      121 catgatttat tattatttat ggtcccaggg ccttgtttat gcacgatggg ttaggtgctc
      181 aggatagaaa tgccattatg caaatgacat tgaatgtcct tactgagcct aaataatttt
      241 tgtgttggac gattaaacct catctgttat tgatatgggc tgcagtcggg ctattaaaga
      301 gtcccaacag tacttactcc cagtaatggg aaaattgaga ggaagaagct aaacaattgc
      361 ctcaagtgtg ctgtgattgt ctggtaggag tggaacataa cgaaccccct gaatggaaat
      421 cgtgtttact acttagggat aaataaaaac acgcaataaa ttgtgctttg tgatctgaat
      481 tggcgcacca gagaatttgc gtactttcga tttacttatt tgatt
//
LOCUS       KCOD01000906             537 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 101273pyr ultra-conserved element
            locus uce-7943, sequence.
ACCESSION   KCOD01000906
VERSION     KCOD01000906.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 537)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="101273pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>537
                     /note="ultra-conserved element locus uce-7943"
BASE COUNT          193 a           81 c          105 g          158 t
ORIGIN      
        1 tttattgtca gtcattatga ttagggtgga caaagtagag tttgcaacta cattagtaaa
       61 ctcacgattt tgcaaggctg tagtaaacat tcctgtgaag taataagaga atagaatcat
      121 agaatggttt tatgagagaa tacatagagt acactactgt gttgaaactg cttaaaaata
      181 gctgtattat ttgctggtct aggaaaacat aatggactat gggtaagaca ttttcccatt
      241 cttaattaaa cttacaacag gaaaaactac cgaagatatg tttcagcctc aatcctatat
      301 aaaacagtca aaacagggat gtgggaaaat gatggagcaa agcacaggta agtgtcaaga
      361 agggcatggg tcttcaccat atgtagcttc aggaagtagg ccagtgaatc cagttgcatt
      421 tgtatctttt tggattatat agttcacgat accacactat tgcacaaata aatttaaata
      481 atgttgtcat aagaatatgc tgcacaaagt acctgatgca caaattctaa aatattc
//
LOCUS       KCOD01000907             649 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 101382pyr ultra-conserved element
            locus uce-2451, sequence.
ACCESSION   KCOD01000907
VERSION     KCOD01000907.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 649)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 649)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..649
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="101382pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>649
                     /note="ultra-conserved element locus uce-2451"
BASE COUNT          156 a          134 c          140 g          219 t
ORIGIN      
        1 gatcctttta ttgcagtgga tctgtagcaa tttgcactgg ctgggaattt ggcccctaaa
       61 agcttgtgtc aacaaaagag aaagcagtag aactaagtga agctgttgct gtcagagaca
      121 tttctattat gtaaccctaa agtagtagtg tttgagtata gcccgttcag tcatcctaaa
      181 cagaattagg ggggaggtgt gaatgtttca aggaggtctt tgaacatttc ttcaaatgtt
      241 cattgcatct aagatcccag tgtgccttta tttgctccag aatgccgctg gactgccaac
      301 aaaggagggc ttgtcctccc aggaattttc tgcattcctc tctggagtag gcatttttct
      361 cagctacaaa ggccctttgg caaattccct ctaatcattg gatttaccct gggctctgat
      421 aggtgccatt catgaacttg gtctgctgtt tgatggggct gaagcattaa tggggtcttt
      481 tcatgataaa caaaacagag taacattact ggaggaatca caaagctgct cttgtagggc
      541 agtgtggttc tttcttgttc cactctgttc tccattttcc tttcattttt ttccttatca
      601 tttccttgct tttatcaaca tgcattcttt ttagtggcag atcttccca
//
LOCUS       KCOD01000908             616 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 101493pyr ultra-conserved element
            locus uce-2886, sequence.
ACCESSION   KCOD01000908
VERSION     KCOD01000908.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 616)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 616)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..616
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="101493pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>616
                     /note="ultra-conserved element locus uce-2886"
BASE COUNT          185 a          122 c           95 g          214 t
ORIGIN      
        1 ttcctttaat tatttccagt tgaccagcac ctttcatatc catccttctt tcttttaatg
       61 aaatgtattt attaagtctt tactccaggt gattctttaa acttatagca tgaggggaaa
      121 gagagaatat ttcacagtga tatttcattg cacttgttcc gtaaaatgtt caagtctgct
      181 atattgctca acccccaggt gtagaacatg agctcccgag gttgaataga atgattcact
      241 tgtttcacta tgaattcaaa gtggatatga agcataaatc ccctttttcc ctctgtaata
      301 tagtagccat gaatcacaat gtcacgctga gtcgatcata atcttaacac ttcacgcctc
      361 agacaacaac ttgatttgtc aagagaacag gcctgcaagc tgccagtagc attgattccc
      421 attggaaaag aaaggataat taagtcctca gtgagctaat ttctttcctt tatataattc
      481 taagaaatga agaaatatat gtttagaatc agttttgctt tccctaaata actttttgtt
      541 ccatttccgt ctgataaatt cttgggatca ttttatttca ccatacaata gcacattgtt
      601 ctacatctca attagg
//
LOCUS       KCOD01000909             616 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 101603pyr ultra-conserved element
            locus uce-7412, sequence.
ACCESSION   KCOD01000909
VERSION     KCOD01000909.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 616)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 616)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..616
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="101603pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>616
                     /note="ultra-conserved element locus uce-7412"
BASE COUNT          185 a          122 c           89 g          220 t
ORIGIN      
        1 taatctatga aataaagtcg cttttcaata cttttctttc actactaaag ctttttatgt
       61 ttgcactatt tacttcaatc agatgttttc aattttactt ttttcttcct gaaaatactt
      121 ccgtcggtag tgaccaacag cattattctt tttctctctc ccctattcac caacccccac
      181 acattaaaaa attgagaaaa gaagaggggg aggaagaaag aaacatcttt tcttaaatga
      241 tttgcaagca tctgtgcttt aagctacttt ttatgaacgc tccttagtaa tgactcaagg
      301 taaaaaagca gaaaagcatc caacgctagg aaattgcaat ccaataccat gtaatttaaa
      361 cctgccattg cctctcctgt actaaatgac atacagatgg gtagctctgt tgcctctact
      421 ttgggaacac aattggtctt tttatgagtg tatatacatt actagctttt tgttgggact
      481 gtttatttca cattgttcca tattttaatt acaattagag tgcccctcct gtattttgtc
      541 agctaaattt tgccaaatat tatcaaagtt acctgaatat tttgcaattt atgttactac
      601 ttcgggcaaa agcaac
//
LOCUS       KCOD01000910             569 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 101713pyr ultra-conserved element
            locus uce-3444, sequence.
ACCESSION   KCOD01000910
VERSION     KCOD01000910.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 569)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 569)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..569
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="101713pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>569
                     /note="ultra-conserved element locus uce-3444"
BASE COUNT          179 a           87 c          103 g          200 t
ORIGIN      
        1 ttttatgaca caaaagtgtg tcataaaaat taccatttag ttataacaag gagatgtttt
       61 tatttcactt aacatctgta gcagatgtga aatatgtaat tatttttgta aaagacttca
      121 taactttcac gattcttttg tttggcagat ctttcttcta ttgggcattt tagacaattg
      181 ataagcatta ttcagtggca tatggtctga gtctgacgtg ctttgaaaag agtagagagt
      241 actaataatg aggattctgt gaaaatggga aaaccagcac aacagatacg ctttgagaaa
      301 gtatggggtt ttagcatctt gaaacaatat atcacactca aagggacaga attgggctgc
      361 acaatctgtt agctcattct tgtccaatct ggtctcctcc tttcttttgg agccagcatt
      421 gtcatcaact tgctgaatta tactctgact ggaatgtatt tcaggcacag ggtaatgtat
      481 ctgcttaaat ggaatcctat ctttctacaa aagcttttta agtataataa atttaaaata
      541 tattctatta gctttaagta aatggttca
//
LOCUS       KCOD01000911             576 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 101821pyr ultra-conserved element
            locus uce-357, sequence.
ACCESSION   KCOD01000911
VERSION     KCOD01000911.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 576)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 576)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..576
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="101821pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>576
                     /note="ultra-conserved element locus uce-357"
BASE COUNT          207 a          105 c           97 g          167 t
ORIGIN      
        1 agcatcactt taaattaaaa ccttcacatt ttcaaaggaa aataaatagt taatggtttc
       61 agaattatta ttcttttcca cacaataaaa aattcccaat gataaaccaa tggcgagaca
      121 cttacatatg caaatacgtt tccgtgaaag agttaaagtg ctttataata taaatttgct
      181 ttcagtgcca atataattag attgtaacaa gcaaacccct gcaacataac acagtgaaaa
      241 tttgaaaatt tgattctccc tggcaaacaa ccaagtccct gcgtgtgcac aaacctgaca
      301 ttaataagct acaagagatt acatgattta gaaaagaagc acttggtgtt acaaaatcaa
      361 ataatagatc tctaggctat aattaggaga attgggattc aacaatgaag tcataataat
      421 gtaatttagc tgtaagtaac agagccatgg agtcacatta ggaggtgtga tcacatcttt
      481 cagcaaagct ctgctgtgta gacttattgc tgttcagttt agtctagtac acagcaacct
      541 gttggcacag agctcaggct gacagcctct tgttct
//
LOCUS       KCOD01000912             773 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 101933pyr ultra-conserved element
            locus uce-2344, sequence.
ACCESSION   KCOD01000912
VERSION     KCOD01000912.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 773)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 773)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..773
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="101933pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>773
                     /note="ultra-conserved element locus uce-2344"
BASE COUNT          189 a          183 c          214 g          187 t
ORIGIN      
        1 ggctgtctgc tgaagacccc ccaccaccaa ggcaaaggtt caatgctcct acctcagctt
       61 gggaggcagc tttgagagag cagctggtcc ctaattgccc agggcctcca ctgacatcgg
      121 actctcagca gaagcagtgc tgctcacaga gagctgcaaa aagatccttc cccacaaaaa
      181 gtcttcttct gagggtctgg tgccattctg aaaccgaggt tccccggggt taaaagccag
      241 catcttaatt cagagtgcca atgttcaatt ttgctttctg ccaccagact agattgcagg
      301 ccagcgagag agtctgggtt agtggcccac tgggtcacct cccatttgtt ttcctcaatt
      361 ttgtgttgtc ataaattcat tccagcccgt tgtggttgat cagtttatct ccgccggggc
      421 agggagcgct gcgagcatga tatatggcac agagcattgt agccagcctc tccatgaatc
      481 actccagctg tttggtgtca gccccaaagc aaacaggacc cggccgctga gcattgacta
      541 cgatgagctc agtatgggaa gagacatgac gtatgaatgt ttatttaata attctctaat
      601 atttccagcg gagtgtggct gtgccttctg ggaggggtga aaggggggga ggttgaagag
      661 ggaaactcta atctgttggg gtgggtcata aatcaggcag acaacatcat taatcaggga
      721 tgggacagaa gtggaaggag gtgggactga aactgccatc ctcgttggga agg
//
LOCUS       KCOD01000913             403 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 102037pyr ultra-conserved element
            locus uce-4918, sequence.
ACCESSION   KCOD01000913
VERSION     KCOD01000913.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 403)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 403)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..403
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="102037pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>403
                     /note="ultra-conserved element locus uce-4918"
BASE COUNT          136 a           77 c           93 g           97 t
ORIGIN      
        1 ccaaaccaaa cccatttccc tttttttaag accacaaaag ggagcagacc cagagaataa
       61 aagctgaaat aaccaaaaga agaaaagaga gattagagag gggagaatga acaacccaaa
      121 ataaaagaaa taaaaactaa ccagctgaat tgggagttga gggtgagtta gcctggcttc
      181 catgggctga cacattggta gccgtgacag ccgttttggc agcataaata ttggcttcct
      241 cttgaaattt acctatgttc ttcttgtacc ggattctctt atttccaaac cagtttgata
      301 cctagagtga gttcaagaga agacaagttt cagctctgcc aagcgaaggt ggattagttc
      361 aggtcccaca agcccaggaa aagttatggg atttgtgtgg atg
//
LOCUS       KCOD01000914            1410 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 102141pyr ultra-conserved element
            locus uce-103, sequence.
ACCESSION   KCOD01000914
VERSION     KCOD01000914.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 1410)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1410)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1410
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="102141pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1410
                     /note="ultra-conserved element locus uce-103"
BASE COUNT          444 a          259 c          286 g          421 t
ORIGIN      
        1 gttataggtt aatataaaaa gagatgtgac tgtctgcatg caacatgggc tcaccaaact
       61 acatcccagt gagatgcagt gcccatttat cttcatgcag atgaaaatag gtatattagt
      121 aaaggaaaat tatttctgta tgtatctagc tgtaaagtcc tgagctgtat tttaacccaa
      181 tgacatcacc acacacaagt tgggccccac aggacagatg tgctttcatg tgcagtgata
      241 tcactttcac taaaacacta aaggcatgac tttcaagcag ttttaaaatt cagatcagtt
      301 ctgctcatat ttaatccaga catgttggtt taacaccaag ccaagccaga ccttttaatg
      361 ttcagtggcc atgatataaa attcctcacc gtgttgcacc aataaattca gaagtgcagt
      421 gtaatttgct atagtcacag agactcttgt gaaatttaag caagagttga aagcaaccct
      481 tcattttgtg ccttacttca gctcctgtgc ggacattact cttgcttgtt ttggtcatgt
      541 tgagatttaa aggtaggctg taaaccacca ttggattcaa gttaggaata gctgtggcat
      601 tatttaggag ttatttaaaa caaacaatgg aaagaaagtg ccacttgaca ctgacagcaa
      661 gtatctctgt tcattttgca ttgtcaatag ctccagtggt agcactattc ttttgacagc
      721 taaaagcaga tgtgtgggtt aagtatggga gcaattcaaa tgtccatagt aaactgcagg
      781 ggggcagaga gagctcagag agcagcagct ttaaagtaat tgactaatac agtaaggata
      841 ttaaagtcat ttagtgccaa aagggaacac actgatcctt gaccctgagc cactttggag
      901 taatctagta ttcaatccag cgtgtaatga ctgccaggcc tgtcaatcct ccgggctctc
      961 cagtcaaatg cctgtggcta ctgttggctt atggtaaaag gacaaaaatg caaggaaatg
     1021 cctctcaatc aggctatgat gtgataatgt tattgctcca atgtattcta tattgtccct
     1081 gcatagttta atctgttgag atccatgtca aaaattgccc ttgttcccca gaggtcttta
     1141 ctcaaccttt tagtaataca agtggatttg aaaggagagg ggtaactcac ttgatgaatg
     1201 gtttccagtt aatataaaaa ataagaggtc aactgtggct taaaggctaa ccatggaacg
     1261 tataaattag aataagtgtg ctagtaatct gattagtaag ccttgctctt catttacccc
     1321 agtgggtaaa atattttcca ataaataata ttgacacaga aatttattta caagagtgac
     1381 ataattccta caaagtttag atgttgagag
//
LOCUS       KCOD01000915             946 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 102249pyr ultra-conserved element
            locus uce-882, sequence.
ACCESSION   KCOD01000915
VERSION     KCOD01000915.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 946)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 946)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..946
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="102249pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>946
                     /note="ultra-conserved element locus uce-882"
BASE COUNT          316 a          192 c          177 g          261 t
ORIGIN      
        1 ggagtaagaa ctgtctttgc actttcctca tgccttatct ttcaactggt atctggaact
       61 tcctgacact cttctttaac tgtttttctg ccaataggac agaagactga tagacttggg
      121 tttagcaaat aaatcaataa aaatagtcaa gccatctgca aggaagatga aatccaagaa
      181 aagaggcaaa ggaatgaaca aaactctgca atgcaatttt aattagcatg ccaaatgcag
      241 gtgtacgaac taggagactg ggaaatattt tactgtaaac atacttccag gctaactagc
      301 aatgctaatg tcaaggtaac aaagaagttc tgcctgtgca ctaatttctc actgcagctg
      361 ttggggtgtt agattagaag cctgtatacc tttcccaaga atattaaagc agactgtcta
      421 acgcctgtgt ttgtcctagt agcctcattc ttgctgctag cagagcatgt cccaactgtt
      481 gtcaatttat caatgtaacg tgcactagtg ggcacagttt gagcagccat taggacaggt
      541 gcctctatcc atcacagcca gtcacttatt ccaccttgtc aggaaaacta aatggagctt
      601 ttggagaaat gtaaacaact ctctaatgga caatcaaagc accactttct gaagcaaaca
      661 agaggaagga atcttttagg agtattttaa gtgttaatat gttgcaattt aaaaacggga
      721 aaaaaaacca acaaagtcag gtacatacac tgagaaaatt tggattatgg gccattaaca
      781 tgctgaaaag agcacctctt tgtctgtctt aatttcgcca acctgaaaac aacagcaaaa
      841 tagggcaccc caaaataaat cagctcagtg tatctagggg cttttctcac aagcttttca
      901 tcttgataaa aatacctcac acaattaggc aatttcattt accaaa
//
LOCUS       KCOD01000916             716 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 102360pyr ultra-conserved element
            locus uce-5564, sequence.
ACCESSION   KCOD01000916
VERSION     KCOD01000916.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 716)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="102360pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>716
                     /note="ultra-conserved element locus uce-5564"
BASE COUNT          184 a          173 c          166 g          193 t
ORIGIN      
        1 tgaagtggat gggagttttg ccattgactt caaggagaca agaagcaaac cgggccctct
       61 gcttgcaaat ccagtcttta tagtcctttc cagatactaa ataaaactgt gcttggaagt
      121 aatttgaatg ccagcaagct gggccagttt gccacggatt tcccaacaat gtgatgttat
      181 taggatacaa atgaagtgtc ttcttcacag tgcaatgtgc aatttccttc ccagtaaaat
      241 ataaacttgc cttatgtgca aacaatttta gcatttctgc catctttctg acaagaaact
      301 cccagctgtt ataatttgtc tcatccttct ctctcttgta gaaccagcct ttgttccttt
      361 ttgcagtgcc agggacttgc tgagctccac ctgatgtgat ttgtccaggc attaataatg
      421 catcttcaag atgcaagatg catgaattcc tttagtaaca gatccgccgg cagactgccg
      481 caccgtattg tgccactttc ccgagatggg ggaggcaaga gggccacaca cgcataggtc
      541 gtcaggcttg ggagcagggg tcctgttatc actacatcct cacgacaagg tcaggctgag
      601 gataatgaac attacaggag acgttcctcc agcaggcagg tccttggacg acctgaggtg
      661 tcaggagagc tggcaagtag ctgccccgct ggcgagtcct gtccctaaac atcaca
//
LOCUS       KCOD01000917             446 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 102469pyr ultra-conserved element
            locus uce-2057, sequence.
ACCESSION   KCOD01000917
VERSION     KCOD01000917.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 446)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 446)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..446
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="102469pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>446
                     /note="ultra-conserved element locus uce-2057"
BASE COUNT          183 a           64 c           70 g          129 t
ORIGIN      
        1 atatacaaaa tttcaaagat aaatacaata tttatagttg atatgttaca aaataaattc
       61 ccttagtgac tgcaagtgtt tatgtgaaag aaagtgttgc aatggataag actattttat
      121 tccttatagc cttcataagg aataaaatct gctttaagtg gatctgaaaa aaattcaaga
      181 caagtgtata aatatttagc tacaactttg gcaaaatcac aaaagtctac aattttataa
      241 ccacatacaa aacacattag ggaagaagga tctagaagtc aaaaggacaa ttttctggta
      301 caagaaacat agacttcaca gtagcctaaa atgcaatagt atacagtgct agcaaaagtt
      361 gaaaaaatgt tgcagatcac acttaacagg aagctctagc agtggaagta tattaaacca
      421 acagacagta gcaatttctt tttttt
//
LOCUS       KCOD01000918             433 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 102572pyr ultra-conserved element
            locus uce-3533, sequence.
ACCESSION   KCOD01000918
VERSION     KCOD01000918.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 433)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 433)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..433
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="102572pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>433
                     /note="ultra-conserved element locus uce-3533"
BASE COUNT          130 a           78 c           88 g          137 t
ORIGIN      
        1 ttttaaagat gctttgacag tgtttcatca gttcaaaaac tcttcagatg tttattatct
       61 tctcagagaa gatgcttgtc tatattttat ggtcagcagt tcacagagga gtaaataggt
      121 tgggtgtaga agaaaataaa aaaggtgttt ctacttactg ttaggtgata ctgcctccat
      181 atttctgggc aagcctggaa aataaaaata ttgatcagct aggagcatga aacaaggtgc
      241 tttacagcct gttggttttg gcataacaca gtatccactg gtgtcggtca caggaaaata
      301 agaagcttaa ctgaaagggt ctgcatttca gcttcaaaaa cccggctaga cagtttaatt
      361 gaattttaca ctggtttaac acactccctg ccattgtcag aaagccagta acagttttct
      421 ctctgccctt ttt
//
LOCUS       KCOD01000919             283 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 102679pyr ultra-conserved element
            locus uce-4757, sequence.
ACCESSION   KCOD01000919
VERSION     KCOD01000919.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 283)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 283)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..283
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="102679pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>283
                     /note="ultra-conserved element locus uce-4757"
BASE COUNT           91 a           38 c           64 g           90 t
ORIGIN      
        1 tgtcattatt aagttttcat gtgtttctca gttttgatgc taatcttcat gtgtgtgaac
       61 agcaccaatg tggttatgaa ttattcagaa atagagtcta aggttcgaga agcaaccaat
      121 gatgatccat ggggaccttc agggcagctc atgggagaga ttgccaagta agtgataatt
      181 tgactcagtg atgaagaaaa gaaaggtaca ttttatataa gaatatgaaa tttcatgcta
      241 aatcaactct gtggtattca gactggtaat gcaaaagttg ttg
//
LOCUS       KCOD01000920             605 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 102790pyr ultra-conserved element
            locus uce-3025, sequence.
ACCESSION   KCOD01000920
VERSION     KCOD01000920.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 605)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 605)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..605
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="102790pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>605
                     /note="ultra-conserved element locus uce-3025"
BASE COUNT          187 a          132 c          146 g          140 t
ORIGIN      
        1 aaaaattaag tgttaaatca agcaggttaa aacgaataca ttcttctatg aggctggtct
       61 aacattaaga cactaaagtt cctgagaaat tattatacta cccaataaca cttgtgaata
      121 aaggaagaga gtttggccca ctgcacaggt ttgggcacaa aagtgcttgc taagctatct
      181 atttcacaca tgcaacgaca gaaggttcga tattcattcg atcgatgact gaaaaggcac
      241 aatggcaaaa tcggacggac ttcttttcaa atacagatct ccgatgtccc cctacagtct
      301 gcagtcgcac ggctggtggt gtggcacaga cggagcaagg gttacatcaa ggctgttctc
      361 tggaccgtgc aaacggtcta gaccaatgac ctgcagcatc gtgccctttg aagaagaggc
      421 aagttcagtc acgacgaaga aaaatcaagg cgtacccctt ttaacaatag ggagcagctc
      481 gtggctgcaa agaggtaagc aggggtaagc aaaaaaggca tctgcttcca tggttacagg
      541 ccaagcatgg gaaccttgct tttgaagagg gacggttctc aggctccctc acaggctatg
      601 tcatg
//
LOCUS       KCOD01000921             723 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 102900pyr ultra-conserved element
            locus uce-625, sequence.
ACCESSION   KCOD01000921
VERSION     KCOD01000921.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 723)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 723)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..723
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="102900pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>723
                     /note="ultra-conserved element locus uce-625"
BASE COUNT          207 a          134 c          146 g          236 t
ORIGIN      
        1 acctaaatca agcataaaca atagagcagt ttgaaaggtt tggtctacga aaaatgtcac
       61 agtctaggaa gactgcttcc tctgtttgat ctgtcactat acttttcaaa acatgacact
      121 ccttgacata atatactttg atgataaact agattaactt tcccagtaca aatgaaaggc
      181 cacctgttgc cagaatgccc atattccttg ttggctgtct tgtagctgtc atcacttcaa
      241 tgcaatctgc gcccaacatg ctggaatata atgaatatgt caggagttgg aggtcagcca
      301 tcaaagtaca tgaaaacttg gcttgcatac agtgtcagca tggaggcctc gcctatcatc
      361 ttgtgcaaag gatttctgca ccacttgatt tgtttgcaga gggcttgttt ctgttggatg
      421 gaacacattt actgagaggc tttttgacag cccattcaaa cattttcaat ttggaaaatg
      481 gtgcttcctg tttcaagctg tataactgat ggatgttgtg aaatgccact gtagctgatc
      541 atgctattgt tattatttta gcatgaaaag agtcatgatg tgccttgaag tattttgatg
      601 agagaaaata atataagagg aatacagtgt atctatcaaa tcctgtccct tatgtatagt
      661 tagcagaact tgctttattc atccttgctg gacataatag gtctctttgg tggctttgta
      721 att
//
LOCUS       KCOD01000922             286 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 103007pyr ultra-conserved element
            locus uce-7929, sequence.
ACCESSION   KCOD01000922
VERSION     KCOD01000922.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 286)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 286)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..286
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="103007pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>286
                     /note="ultra-conserved element locus uce-7929"
BASE COUNT          100 a           54 c           47 g           85 t
ORIGIN      
        1 gggaaaaaaa tcagcttgaa aataattaaa cagcaaggca gccacccata atgatattca
       61 gcagaacaca ttagggacag tttgctggga atgcacaaga gcactccagt tgtttaatta
      121 acattgaaac ggcggttcca caagaactaa aaatcctgtt aatttatgtg tctcttaatg
      181 atgctcattt aaatactgtc aacttttctc cagtttaata ttcatgattt ttagtcatta
      241 aaacaccact ctcagcttgt ggattcactg agaaacacaa attgtt
//
LOCUS       KCOD01000923             690 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 103114pyr ultra-conserved element
            locus uce-6714, sequence.
ACCESSION   KCOD01000923
VERSION     KCOD01000923.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 690)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 690)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..690
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="103114pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>690
                     /note="ultra-conserved element locus uce-6714"
BASE COUNT          222 a          115 c          126 g          227 t
ORIGIN      
        1 aatcagcact gctcttctta aggtcagggg aatgtatcaa aacattcata tatttaaata
       61 tgtattgtca ttttaatagg cactgtggat agtttaattt gtatctgtat taaattaaac
      121 atatggtgaa cagggtataa tagattttct ataatttagc tgccaatgtg gcaacagaag
      181 ccagttactc tcaccagcag acttgtcagt ggtttgttta ctagcttatt tgaattaaaa
      241 taaagcttcg cttctgctga ctgcacatca ttatctatga gaccataatc ctgctagcaa
      301 atcctatatc ttccagaact ggctcttttg tttgggatta ctgagagctt agcctataac
      361 aaagaggaat aaggcatccc tctcatcctc gtaattaagt gtggggagta atttagaaac
      421 aaacccagaa agatgtacaa tttggagttc tgcttctata caggattggg gaacagaaga
      481 ggccaaacac tgattatgtt agcacaatat ttaaactatt caggaatcca gcttttaaaa
      541 gaaatgacaa ctatcagtaa agtattaagt tattttacac tggagacatt ttttacgtat
      601 ctgaaggtat gttggcaaat ttgggcggag cttgaagacg attttaaact acatgcacac
      661 tttatagcac ttttataaca tcttcatttt
//
LOCUS       KCOD01000924             352 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 103222pyr ultra-conserved element
            locus uce-4930, sequence.
ACCESSION   KCOD01000924
VERSION     KCOD01000924.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 352)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 352)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..352
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="103222pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>352
                     /note="ultra-conserved element locus uce-4930"
BASE COUNT           95 a           60 c           93 g          104 t
ORIGIN      
        1 gggtgtggga gcgggcggct gccagggaag atgaatggtt ttaatcacgc cgcttacagg
       61 gcaccatctg aagttttgtg taagttatga tagcgacagt ttgcacgaaa attgtatttc
      121 caggcttcat tgactggctt aatgagaatc tttacgtgtc agatattaaa ttaagaaatt
      181 aaagagctgt ttcggtgtgt atagactcca ctgagctgct tcttccagat caatcaggaa
      241 cgcgcctcta gaaaagatgg gagaagcctt tgattttctg tcactgggga agtgaatcta
      301 atacgcgttg gcacctaatt catgttttat taaaaggcat gaggtggatg ct
//
LOCUS       KCOD01000925             411 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 103425pyr ultra-conserved element
            locus uce-2127, sequence.
ACCESSION   KCOD01000925
VERSION     KCOD01000925.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 411)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 411)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..411
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="103425pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>411
                     /note="ultra-conserved element locus uce-2127"
BASE COUNT          122 a           77 c           94 g          118 t
ORIGIN      
        1 aaaagcaaat taattaaaga cccttaagtt ttaaagggtt ttaaatgcta tacgttttgg
       61 ggaaatatca gaaaatgtag cttgactgac gtcagttccc atctctggga tgggaggcca
      121 tttgctattc tgtttaaggc aggctggatt gtcttatttt ggagccagct tggtgggggg
      181 ttttctttgc tgctgcttca gagctctgag cttcaaaggc tgaaattaat ggtgaacaaa
      241 attgtgcggc tctgaccatc ccatgcgggg caaacccatc gagggttatc attaagtaaa
      301 gaaataaaga aaaaaaaacc ctgccagttc caagaaaacc tcatcagata atgacctctg
      361 tgattgggtt ttcattacca aatagcatcc agagattgtc tgccccatag a
//
LOCUS       KCOD01000926             464 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 103532pyr ultra-conserved element
            locus uce-6606, sequence.
ACCESSION   KCOD01000926
VERSION     KCOD01000926.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 464)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 464)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..464
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="103532pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>464
                     /note="ultra-conserved element locus uce-6606"
BASE COUNT          106 a          166 c           96 g           96 t
ORIGIN      
        1 aaagccaaat tgatccatct ctgctccgac aaagctggta tcaatgcaca catccagccc
       61 tcgcaattca tcccctcgct tttgcctttg aaagcacaca aacgggtcac cccctctcca
      121 cccactcgcc agggacccca gccccgcact cacctatctg gatattgttg gggaaattgg
      181 cccctaacac cgcccctagg aaaccggtgc agaagaaggc aaaaatgtgc tgcatattcc
      241 cttttgcatt ggcgaaaaag aagcccagtt ccaagcatag atttgatttt tcccccgctc
      301 tgctctcttt agctgcctcg cctcctctcc gctgcgcctc cggggtgctc tccctcgctc
      361 cgaatccagc gctgagactg ccgctgagca gcgcctggca gcaggattaa ctgagccccg
      421 agagaaagaa agagagcccg ctcctcatct cccccgccac acac
//
LOCUS       KCOD01000927             564 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 103640pyr ultra-conserved element
            locus uce-2734, sequence.
ACCESSION   KCOD01000927
VERSION     KCOD01000927.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 564)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 564)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..564
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="103640pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>564
                     /note="ultra-conserved element locus uce-2734"
BASE COUNT          120 a          161 c          105 g          178 t
ORIGIN      
        1 tttatttctg tagcttgatc atctgagcag ggatattatt ttcttccatt catcctcatc
       61 agagaagaaa aggccttggc ctcatcccca gcaagccccc cataaggcac tgtagcctct
      121 gcctttcttc cctccttcca gggctataaa ttaatatctc atcattgacc ataatatgcc
      181 ctgtaactct gtttattatt actgcgtatt ttagacaggt ggtaagtatt ggcacttttt
      241 attatgctga taaacaatgt cggactgcca ggtgaaatgt gttgtcgggg cgatttctca
      301 cttccctcta gcctctcatg gatttctgcc tgggctaagg gagtgcagag ctccccacct
      361 tttgcagcac cctcccctct cctgcacgga gccaatggct gtcactcctt tccaatccac
      421 gctttcaagg gacataatgc cacaaataca agtgccttcc cttgcttccg atcctcattt
      481 ccctcatgat ttttgcagct ctctcagatc cattcctagc agcattggag gtcctgccct
      541 cctgaactgc tgttgtttcc gaga
//
LOCUS       KCOD01000928             818 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 103753pyr ultra-conserved element
            locus uce-1754, sequence.
ACCESSION   KCOD01000928
VERSION     KCOD01000928.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 818)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 818)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..818
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="103753pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>818
                     /note="ultra-conserved element locus uce-1754"
BASE COUNT          268 a          176 c          135 g          239 t
ORIGIN      
        1 aagcttgaac atgaagccaa taaaagaaaa cacaaaaaag tgagacatct tagctaatga
       61 aaataaagat cttccctcat acgtgccctg ggccttcctg ccatatttaa ttgcacttac
      121 taggagagac agccccactt ttatttcctg aaccactggt ctcacatagg actgaaaagc
      181 agcagaagaa agtcttcttt gctgtgctac tatacacatc agacatctct aattagacag
      241 caacaaaatt ttattaatag gctggacatt atggaatgag cttgttataa atgggccctg
      301 tcaaagcctt attcagctac caaatgagta ttctcagttc actgctcgca tctgaagcat
      361 caccgctggt gccggataac aaatgattgc tattaaccgt attgttagta atgatggctg
      421 aaaacaaaca aaaacccata aataacagtc tacagaaaaa ttaacccata aacttgatag
      481 atatccagct gagaaataat aaatgacact ttggttcctg ctgggagaag ctagtggttt
      541 ttgttttctt ctctgtcatt aacacatttt ctgtgctaaa aattagattc tgatatataa
      601 ttatcaacgc ttccagatat taattctgct atcgctccct ctgcttctct gctggttggg
      661 tgtaatgtta ttcacagatt actctgagaa aacacatcaa acacttaaca gagcaggtca
      721 aagtgacaag cagcttttgc tgacaacacc aacctgcaca gcctttttta ccccggacac
      781 aaaacaaatt tctcgtatta attaactctg gtttcttt
//
LOCUS       KCOD01000929             664 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 103863pyr ultra-conserved element
            locus uce-959, sequence.
ACCESSION   KCOD01000929
VERSION     KCOD01000929.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 664)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="103863pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>664
                     /note="ultra-conserved element locus uce-959"
BASE COUNT          219 a          126 c          118 g          201 t
ORIGIN      
        1 tgtgatagca tagatgttgt tatttaagga agcaatatga catcccattt aatttcctct
       61 gaaacaagac aatctggctt accaaatata gcctgacaaa gaaaaataga aatttcctga
      121 tcaaagatcc aagagtgcag tgctccacct taaatccctc ccacctatta ggtccccctt
      181 tagacaagac agagaaacaa atttctcaca catcaatgat gcctccataa tcaatttcaa
      241 atagcccctt gcatagggat gcaaatctta gctttctctt aataaagcct tttagaagat
      301 ggatgtactg atctgatatt attaaacgaa aagtggtctc tttttaatct agagatgcag
      361 gggcgttagt aacagagtga atcaaaggcc tggtctcttt ctcttcctaa ttatcaatag
      421 tgttttataa tcttattaat attgatacac agtatactga agatctgtta acgtataatg
      481 tatgtggagg ataattaacg agatccgagt cagatcaatc gcctatttga cagaaaacgg
      541 tgtgtggctt ataaattata catatgctag gtatggctag aaatgtttaa agtttcagtc
      601 caatccttcc agtacagcac tgggaaaact gatgaactta aaggcacagt cccttgcctg
      661 ttag
//
LOCUS       KCOD01000930             448 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 103969pyr ultra-conserved element
            locus uce-1912, sequence.
ACCESSION   KCOD01000930
VERSION     KCOD01000930.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 448)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 448)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..448
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="103969pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>448
                     /note="ultra-conserved element locus uce-1912"
BASE COUNT          168 a           73 c           88 g          119 t
ORIGIN      
        1 gaaaaaaatt aaaaagagcc ttgcctaaaa gactacagta aatcacgaaa gtgatctcaa
       61 gtgaacagag atggatttct ggaatacggt gtgcaatgaa accactgacc tcttatacaa
      121 gggttcatgt ctttttctac agaaacagat gggtaatagc ataatgctga aatcatgctc
      181 tacataatat ggacctagtg attgcagacc tgattgcttg ccatatggtt gctgaagggt
      241 tgaagagaaa atgggatgat atgcaaaccc ttaaaagcaa catttttatt gaatggccat
      301 tacattaaaa cccaaactct gcaaatgaag gcaagaactg tggtgaataa tgatgaaata
      361 acaaaacaat aaaagaagaa acacaatagc atgtatttgt ttgcagtatg caaaataata
      421 ctcctcattt ttgccttgtg ttacgagc
//
LOCUS       KCOD01000931             380 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 104068pyr ultra-conserved element
            locus uce-5189, sequence.
ACCESSION   KCOD01000931
VERSION     KCOD01000931.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 380)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 380)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..380
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="104068pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>380
                     /note="ultra-conserved element locus uce-5189"
BASE COUNT          139 a           82 c           70 g           89 t
ORIGIN      
        1 catttcctag gcggaagaat tatacccctg ctgtgttcta atcaaccaac catcatcaag
       61 acaatcaaaa taatttgcct aaattagcca atcaagacac cctgcaaacc gcagaatgcg
      121 aaaagctaca ccagaaatca tcatagttga ttattatact aataatcacg ttaaaaacct
      181 aatgagatga ggaaattgga agcttgctgg agcaactctc tattacctca acatgctggg
      241 aactaattat atagactgta attaaaacaa aaacaaaccc aagcccaggc cctggctaag
      301 ttaatagttg gtccagtaat gaagggctgg gataggagac agtaataaag agtgacagtc
      361 ccagaggtgc tccttctcag
//
LOCUS       KCOD01000932             492 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 104169pyr ultra-conserved element
            locus uce-6263, sequence.
ACCESSION   KCOD01000932
VERSION     KCOD01000932.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 492)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 492)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..492
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="104169pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>492
                     /note="ultra-conserved element locus uce-6263"
BASE COUNT          183 a           86 c           77 g          146 t
ORIGIN      
        1 aagtaggtag atattaaagg ttacccagat ggtttatata ttactataat aatcttgttc
       61 atagaaactc tcacaaagaa aataattaat cataaacata ctgtgatccc cctaaagcag
      121 tgactgtttt aagttgaaat cccataatgg ctatgacctc taaccctgat gtaactgttt
      181 ctatcctggc tactaaagtg gctgctcatg aaaggccatc aaatacagaa gtaaatgcaa
      241 aggttaacaa agttagtgga ccaaacaaac ttgatactga gaatgaactt tcacatgtag
      301 caagaaaata aacacccctc ttccagactg atctacacag gaggtttgag atgccaaaat
      361 attaaatgtt attaagcaca taatctctat tttacagata agtgtttact ctgggggtta
      421 ccatcctttt atattgataa aaaatcttcg ctcaaattaa aaaagaaaaa agttcatgca
      481 ttttcattga ga
//
LOCUS       KCOD01000933             437 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 104271pyr ultra-conserved element
            locus uce-6640, sequence.
ACCESSION   KCOD01000933
VERSION     KCOD01000933.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 437)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 437)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..437
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="104271pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>437
                     /note="ultra-conserved element locus uce-6640"
BASE COUNT          128 a           86 c           74 g          149 t
ORIGIN      
        1 ccttgcttag aatactaatg tttactataa tgcagtgaat cccaatttgg ttttgattgc
       61 aataaactgg agtcaaacat gcaaaccttt gctaatttaa gttgatttta cctttatcgt
      121 attgcatact gcgtgatcta gagccacaca aacaaaagct tgtttggact taccgtgctt
      181 tccttttcag aaaacagaat tcaaaaacac tttaaaaaaa tcagtatgtg taattgctaa
      241 cacctgctat gtgttactaa cagatgtttc ttacttacct aagggaactg ttataattac
      301 actgtacgct tattggaatg gcatttaacc aagatagttt aggaacttta ggtggtgact
      361 ttgtgttctt tcattcatct ttccgacaac caggcctcct attcaccagt caggacaatg
      421 ctttgggcgt tcagcct
//
LOCUS       KCOD01000934             701 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 104377pyr ultra-conserved element
            locus uce-3860, sequence.
ACCESSION   KCOD01000934
VERSION     KCOD01000934.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 701)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 701)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..701
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="104377pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>701
                     /note="ultra-conserved element locus uce-3860"
BASE COUNT          201 a          160 c          127 g          213 t
ORIGIN      
        1 acaggaacgg cagacattta tctcgttcag atcacgttag actgaggtat ttacatccca
       61 gattatactt agatttccca ttctccattc tttcattctg tatcatatat tcaggtttag
      121 ccactgctct ccacatggtt gagacctccc tggcagtgcc aacctagtag ttggttttct
      181 gtctcattag tgaatgaagt agtagtaagt taatgtaaat ctagcaatcc ccacatgctg
      241 ctctgatgta atcacagatc ccaggaaaag attgtgcagc ttcttacctg cagctccttt
      301 gagactctct ctaagtggtt agttatcttt tttattaggt cactatacat ctgttccgaa
      361 tgctgctggc atacacactt atacacacaa ctgcagaaac aaatatagga acaaacaatg
      421 aacttacaac agtttgcagt gaagggtaac agacttcaaa acattttgtt caagtttcag
      481 tttagaggat aacagagtta attgaatgac tccgaagctt ggaatgagtt ccagcaggac
      541 ctcaccgctc ccctggaggc tccagggtgt ccatcccatt ttttaacttg agttctctta
      601 acagcgcact tcaaaacagc caggacaatt ctgtcaacag cacacctact tctggctttg
      661 tctctcctat gtgaatgaag aaataaacag gtttaacaat t
//
LOCUS       KCOD01000935             252 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 104479pyr ultra-conserved element
            locus uce-3642, sequence.
ACCESSION   KCOD01000935
VERSION     KCOD01000935.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 252)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 252)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..252
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="104479pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>252
                     /note="ultra-conserved element locus uce-3642"
BASE COUNT           75 a           49 c           45 g           83 t
ORIGIN      
        1 acatttccac actttctcct gggttcgtac aataaaggag ttaccctact ggctgcctta
       61 ctgaacagag acctggtatt gattacctat cacactggca tcagaactac tcttaggatt
      121 caattttttt gttgttttgc atattttatt gatcaaaagt ggtaaatgag catcaagcgt
      181 gcaagaagac gatgaattgt ttacttgcat aaaataacct ttcaataagg gaagatgcat
      241 tgctcacact tt
//
LOCUS       KCOD01000936             604 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 104582pyr ultra-conserved element
            locus uce-3439, sequence.
ACCESSION   KCOD01000936
VERSION     KCOD01000936.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 604)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 604)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..604
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="104582pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>604
                     /note="ultra-conserved element locus uce-3439"
BASE COUNT          182 a          119 c           97 g          206 t
ORIGIN      
        1 cagtggactc taatacctct gatctcattt ccttcttatg attgctgagc acacacacag
       61 tttaatagac gaacttgtac ctttcatatt gtcagaagaa ctatcagaat acttacatta
      121 aatccttgta cattttgcct tattttttac gtatctctcc tactcacata taaaacatgt
      181 cttctaatga tgtactttta gaaaagtcta attaaaattc aatgcataaa agcgtgcaag
      241 ggttgataac ccacagaact cagcagaccc tagttaacat tctaatgcat cctccatttg
      301 gagagagaca gtgagacttt tccacctcgg tggcagacac taatgatact tgcaaatatg
      361 actaatgtct tcattggtga aaaattaatg caccgcaata atttttctac ctggggttaa
      421 tgaacatgtc agatgctgaa aacgagttgt ttgaaagtaa attactataa tctatattta
      481 gaagactctg ctcttctatg gtgtgtttga tgtcccctgc ttatttttgt catgaatttt
      541 gctgttcacc cagtaagact acactaggtt gacttttcta aggaaatgtt ttcctagaat
      601 gctc
//
LOCUS       KCOD01000937             562 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 104694pyr ultra-conserved element
            locus uce-5860, sequence.
ACCESSION   KCOD01000937
VERSION     KCOD01000937.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 562)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 562)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..562
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="104694pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>562
                     /note="ultra-conserved element locus uce-5860"
BASE COUNT          191 a          104 c          109 g          158 t
ORIGIN      
        1 tttcaaccca catttctgaa gatgcagcat tttcagaaat agtataaata cacagtataa
       61 aaaggaagta gacactttga aacagatgca ctggcgccct tttatagcaa ataaacgacc
      121 tgggcactaa ggaagcacag actcaagcat gccactaatg aagcatttgc agagtcacaa
      181 aatgtcacag atgagccacg cagcagctga cctgataggt ggaattagtt ggcaagtgct
      241 gcagtaactg agcgattgtg taatttctta tactagccaa cttagcctga tgtctcctta
      301 atcgaatgag aagcaatgtt agctcttcag gctgcaggta tttagacaca ttgtaaagag
      361 gaaattagca gtcttcaggg agaggaacta taattacatt tttcacctca gtgcccagaa
      421 agcacttgac atgattaagc aattatttaa ttaactctgc atttggtcaa ataaaaactt
      481 gaatcctgta ataacataca ggctttactg gtttaagatt aagttctcat tcgagttatt
      541 tatgctttaa ctaagattaa ag
//
LOCUS       KCOD01000938             412 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 104799pyr ultra-conserved element
            locus uce-5974, sequence.
ACCESSION   KCOD01000938
VERSION     KCOD01000938.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 412)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 412)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..412
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="104799pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>412
                     /note="ultra-conserved element locus uce-5974"
BASE COUNT          135 a           76 c           85 g          116 t
ORIGIN      
        1 tgtggcatta ggtttgcagt atattgtgat tactacggac cagctacaga tgcaaacatt
       61 taaaaattta cattttccac tgctaaaatg tatataatac acacattatt gcagtgtgcc
      121 ataccactat aatgatatta tatggcaaat gtaaacttac acagcattag ttaccataga
      181 gtagttttgg cccagtgaca ccagtaggaa aaattatgtc cttgttcagc tcatcatatg
      241 ggcaccttaa atctaggtga ggacaaatgg ggaggtgatg tgcatgtaca ggcagggaac
      301 ttattgcttg acacggatca acagagcact taggaaacca gtgcagtggg aaatcaatat
      361 gactcagggc cagctcttac tttgtgctct tttgccaatg ccaaaaaaaa aa
//
LOCUS       KCOD01000939             800 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 104909pyr ultra-conserved element
            locus uce-6703, sequence.
ACCESSION   KCOD01000939
VERSION     KCOD01000939.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 800)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 800)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..800
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="104909pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>800
                     /note="ultra-conserved element locus uce-6703"
BASE COUNT          264 a          157 c          125 g          254 t
ORIGIN      
        1 caagtttcct gcaaaggtac cgaccacgtg ttagtgacac ttgagagagg aatacacaag
       61 ataaaacccc acagcatgta acttttcagg taatgtttat taaatactat ctttgtttca
      121 aagcagtgca ctggaagaac atcaaaatta cttcaaagct tcagtgataa tttttgtgtt
      181 atactttaac tttatcacta tagctcgctt tagatttgct tcaaatatta aacagacgct
      241 ggctatagta gttagctgaa ttgtttatgg gatcaaaatc aaactaaacg ttcagaaaat
      301 tttcagcaag agattccagt taatgaaagc accatttgtg atgtgctaaa acatgtatac
      361 acataggtat tgccccattt atcagacatg agagctaatt acctcatcca ctgctatatc
      421 tcttccatcc tctgcatttc aattcccaat attaacacat aggtggtcaa gctgaccatt
      481 gaatagccta catgagcatg aatgcattaa ataatttaat gttagaagag tttattaaac
      541 tgccacattc taatcagcat gcgtacctgc cttcattaat cttgcactgg tccatggtgt
      601 gtctccacag ccgacataga gtgtgctaat gttaatagga gctcttaaca aacaggatca
      661 gttaatcaag gaaaatttac tattagccac atgaccatgc atactgaaat ctaattacaa
      721 tcagatttaa cctcttcatt actgtattca tccaaatatt ttttgttatc acttgtgata
      781 ctaaagtatt ccaaactgag
//
LOCUS       KCOD01000940             798 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 105017pyr ultra-conserved element
            locus uce-6528, sequence.
ACCESSION   KCOD01000940
VERSION     KCOD01000940.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 798)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 798)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..798
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="105017pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>798
                     /note="ultra-conserved element locus uce-6528"
BASE COUNT          228 a          159 c          175 g          236 t
ORIGIN      
        1 gcctcaaaag aattttcact atctccagat aattaaaaat taatgaaaag caagatatct
       61 tttctccccc ttagagacaa aattcatgca ggttgagctg cgacttgaaa gatttgaaca
      121 gccctttgac agcatcactc tgtaggtaga tagggaagtc aaattgcaaa gtgggttttt
      181 agaaagcaaa cacaaaagaa cacgtcggca agcttttctg tttgttcccc atcttcagat
      241 aacagtggac tcaaattatt gtgatgtgtt gattgattac agccgttaag tttcttagta
      301 atcagtttca tcacttattc tcaattcacg cttgcacctt tgatttctct tccacaacag
      361 ggtgatgtgg gttgtcgttg actaatgaag aacagaattg gtttcggcgt gagacaaacg
      421 gaatgccgac accaatccca aaatgcatta atctttaata atccacatct gcatgtttat
      481 aaatgatata accaggagtc gctagtgtta atactccccc ttccaaacag aagctgacat
      541 aggagttggt gtttgcaaac tgcatgagag gcacgtggcc gcgcgtggtg cgtgtgacct
      601 tgcggaggga gctcgccaga tgaaagttct cggttgatta aaaatacatg aagaattgct
      661 tcgcttctgc accggtcttt ggagcttatc gttgtcgggc aagatgaaat atggcatgat
      721 agatcttgtc ttctagggag atcagaccca ccaaatggtt tttggaagca ggtttgcctc
      781 aaggtgcttt tatccttt
//
LOCUS       KCOD01000941             475 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 105127pyr ultra-conserved element
            locus uce-3200, sequence.
ACCESSION   KCOD01000941
VERSION     KCOD01000941.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 475)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 475)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..475
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="105127pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>475
                     /note="ultra-conserved element locus uce-3200"
BASE COUNT          145 a           87 c           96 g          147 t
ORIGIN      
        1 cttttcagtt tgttctttta agtcttttaa aggtttcttg aaaggataat aatgatccat
       61 tttcatcaag agctttgaac tgacggccct gggtatatag ttagagcatt aagggcagta
      121 tgggtagaac agccaatcag agtaatgagt ctccactgct tgagaaatcc agattaatct
      181 aaatcaaata ctttccacta tggcaatttt aactaattcc ctcatgaaag tataagagat
      241 atgtgaaacc cctacagtca gcataaacct cctggtaggg ctagacaggt aatacctttt
      301 aagcttgtta atgtcttatc ctgctggttt ctacaactga ctcaaagaat agctgagtag
      361 ctctcaacct gtcattacag aagaaagcaa ctttcagcat ggagatggaa agggtgatgc
      421 tgtgttttgt atatcatggt aatactagta cggctagagc tctctggact gacat
//
LOCUS       KCOD01000942             689 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 105237pyr ultra-conserved element
            locus uce-2222, sequence.
ACCESSION   KCOD01000942
VERSION     KCOD01000942.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 689)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 689)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..689
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="105237pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>689
                     /note="ultra-conserved element locus uce-2222"
BASE COUNT          223 a          142 c          136 g          188 t
ORIGIN      
        1 ggaaacgtaa tagataaagg accaataatt cttactgggc tactgggctt ctgcaaggga
       61 agaaaaatca gttgttggcc cgatagctga gtgccctcca ctgtcaaatc catctgcaca
      121 tgctcttcac ctttcagtcc ctcttcatta caaaactgtt taacagcaaa ggtaatgtga
      181 tgcaacatat attttacaca tagatacaca catacaaaca attttttgtt tttgtttttt
      241 tacctaaatg caaactggat gaggatccat gtgatgaaag tgatggcggt ggcgtaagtg
      301 aatgtcctgg cgtttggctt ggcagaggca tgcctattgg acttggagag gaggaaaatc
      361 ccagactatt gtaaaatggc tgccctatgg gtgctaggct gctactagat cttttgtaca
      421 agtcagagct agtagataga gaatctctcc ttgtggcact actacttgca gaactgccaa
      481 ctgaagaaga aataaaaaga ccctaattac acagtgtcaa ctgaataaaa cctatcccca
      541 actacagctg ggcaacaaca gatgtgatca caataattac agcaatcgtt atgacaaaga
      601 caattactgt gataaccaca catgctttct aaatctaagt gggtataaac ataccactgg
      661 caagtaattt caccaatttc aacatttca
//
LOCUS       KCOD01000943             885 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 105346pyr ultra-conserved element
            locus uce-2070, sequence.
ACCESSION   KCOD01000943
VERSION     KCOD01000943.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 885)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 885)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..885
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="105346pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>885
                     /note="ultra-conserved element locus uce-2070"
BASE COUNT          278 a          180 c          125 g          302 t
ORIGIN      
        1 taatttatgt tacaatattg ctgtagtgat atcagagaca aatgtttaat tcacagaaac
       61 tcagtttcaa actacagtcc ctgaatgcaa acagcagact tcaatttctt agttcataaa
      121 aatcaatttt tttacactgt acataaaaga ctgtggcatc aattagcctt aattcttttt
      181 tttttctttt ttggaaacct ctttgtagga aaatctcata tttcagcaat ttgcattatc
      241 cacacaatct gctttgaagt tctaagttat ggtaagaaaa ggatccactt atctgcacat
      301 aaaaaatgtt caaagcttat aaattccctg aaacagatgt acattatcat tggatttgcc
      361 tttctctctt tgctgttgca tggctaatag agtttcatgt gccccctcac atcctcccca
      421 tttagcatct tttctctaca gaagcatgca ccctactgtg ccaatccaca cttcaaagat
      481 ttctgtctat ctattagaaa caaagcacaa agtgagaaca tatggcccct tttaaatttc
      541 ccacatttaa gtcaatatcg tttcttttct cctttggcaa agaaacataa taaggtttat
      601 cttctccctt cctaaatctg ctggctctct caaactgctt gtgccaattc agcacttact
      661 ttgcagtatc agacttggca gcacatatga aaacaaaatc tctaattttt taaattgctt
      721 ttatttcttc agatcaagaa gatgcattta aatgatgaaa atgtaactgc acactttcag
      781 ataagtggat tttaaacaca tgaaagggca caacagaaag tcaacagctg ttcaagttct
      841 tttcatggtg acatctttcc aaaggatgga agagtattct ggaat
//
LOCUS       KCOD01000944             863 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 105457pyr ultra-conserved element
            locus uce-290, sequence.
ACCESSION   KCOD01000944
VERSION     KCOD01000944.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 863)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 863)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..863
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="105457pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>863
                     /note="ultra-conserved element locus uce-290"
BASE COUNT          237 a          148 c          207 g          271 t
ORIGIN      
        1 ttaaagatta atttaataat ctcagttggg tgaagaagag agcaggttag gcacgaacaa
       61 accataccaa agctgcaggg agtgaaggtg acagtccagg gacagccact gctgacttta
      121 ttctagtggg gacatgactg atcttttgct cagtttggtg catgaagaag gtacagctta
      181 caaggcatgg tgctccttaa ctaaccattt aaatgaagat taaagttatg gagttggaga
      241 gtgttttgct gttttataat ttagcagttc aggctgaagt ttcttttgtg gtttttatac
      301 aggcagccta gaagatggac atttcacagg cgacaataga ctgctccttt cccaggtatc
      361 tcctgcttgt ttcctttatc tgtgaatagg aaatggctta aaggcacctg tgttatgaag
      421 gtcccagggg cagctgcctg actagtgaat gcctgattat gtgttaacat gctttgtcag
      481 atattggcag aatctgttct cttcttttgc cttttcagca agggtaccat tgacagactg
      541 gctacccatt tatagaaatg ttgtccatca aactgtgagg aaggacaatg gtgtttttct
      601 gtgaccagtg actgtgggaa acttttcttt ggctattcag gcaatttttg tagcttgctc
      661 tgaagaggag agactgatga gtgcaaaaag tacaattaag cgaagccaga cttcaattga
      721 aggctgtagt gtagtctgct tgttctcaaa aaaaatctat gggttttcac gttgctgtgt
      781 ggcattcagc ggggggctat tacaatccta aatttttttt ctagaccacc taattctaag
      841 taaaaattaa atgtaatgag agc
//
LOCUS       KCOD01000945             362 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 105568pyr ultra-conserved element
            locus uce-6499, sequence.
ACCESSION   KCOD01000945
VERSION     KCOD01000945.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 362)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 362)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..362
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="105568pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>362
                     /note="ultra-conserved element locus uce-6499"
BASE COUNT          118 a           76 c           70 g           98 t
ORIGIN      
        1 ccacaataaa gtgattctgc tgtggagata gcaccaggtg catgggggtg acctcacaca
       61 cacaccaaat cgggagctga catccatcac actttgaaat tttggatttc atcatttcct
      121 gatctttcta aagggatcac agcacctggc cctcacagct gtagttcatt tagaaagcaa
      181 tttaaaaacc gagaaaaaag caaatgacat cttgctgcct cagccttgtc attaagtata
      241 gcagaatggc cttcatttat gagacacatg gctaagaatt aatatctttc agtgctttct
      301 caagttgaga ttacaaaagg tttgaaagac cactaaataa ttagtactat gactgaggca
      361 ag
//
LOCUS       KCOD01000946             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 105678pyr ultra-conserved element
            locus uce-2252, sequence.
ACCESSION   KCOD01000946
VERSION     KCOD01000946.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="105678pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-2252"
BASE COUNT          143 a          149 c          108 g          234 t
ORIGIN      
        1 ctttggtgcc tttttaacaa tattttctct tttccttctc ttcccatcac ctttttgctt
       61 ttatttcatg tgtttggttg tggctattcc ttacgttctc ctcctcatcc cacctctgcc
      121 tatccacatc caccatttca tttcacctat acatccttag catggcaagg cactgacctg
      181 atgcataatc acgtcttggc tgatgatgac caatcaagtc tagactcctt gggtcgtcgc
      241 agtagtcttt ctcgtttgga gccttcagac ctctcagaag actctgacta tgacagtata
      301 tggacagccc atagttacag aatggggtct acatctcgta agagctgttg ctcatatatc
      361 tctcaccaga actaatgcac ttctgagctt tttcttaaca aatgcttgtt gtatcacagc
      421 ctgcttttct tagatgtttt cttgctgttc cttgtctctt taatgtgata ttttaacaac
      481 ttctgaggga gctcctgaga cttcagttat acctggtgga aggctctatt gtcaattcaa
      541 tacacgtacg aataagtcat tctaaaatat cctgttaagg atgatacttc ttgagggttt
      601 ttttaactga cagatgttaa tttgtagctc tgaa
//
LOCUS       KCOD01000947             481 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 105784pyr ultra-conserved element
            locus uce-5761, sequence.
ACCESSION   KCOD01000947
VERSION     KCOD01000947.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 481)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 481)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..481
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="105784pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>481
                     /note="ultra-conserved element locus uce-5761"
BASE COUNT          163 a           96 c           82 g          140 t
ORIGIN      
        1 actttgagac tgagaaaatg gcaagtgatt ttacttaatt gttctttact ataactttca
       61 ccctatgaca ttaaacataa gctctttttg aaaatagtca ttaacctttc gcatgatgta
      121 taactagctt tatcagtccg gttccacttt gagttctgaa aagaagatcc actgggagac
      181 acacaaatgg taaaccacac cgaaggacac aaaaaggccc ataaaacatc agtagggtta
      241 taaaggtcta tggattttaa ttgctgtgtg ccattgggcc tttacaaagc aatcaagcag
      301 gcaatctccg aagacaaccc tgccataata cgtttaacaa tagagttctc gccccatcag
      361 cagactaggg tttatgaagg tcccaattgc aattaatgac cttgtacatt ggacaaaatt
      421 acttaaatta actacccttt ttggatacat atctaagtat cagaaagtgt aatttcaaga
      481 c
//
LOCUS       KCOD01000948             522 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 105894pyr ultra-conserved element
            locus uce-4044, sequence.
ACCESSION   KCOD01000948
VERSION     KCOD01000948.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 522)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 522)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="105894pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>522
                     /note="ultra-conserved element locus uce-4044"
BASE COUNT          118 a          110 c          139 g          155 t
ORIGIN      
        1 tttgctgtcg tatcacagga cacgataatc tcccgtatcc cgtcccggta acccagaagc
       61 cgcctatttt acatattggg ggcaggagag gagataacgg cggtgagttg agccgagtgg
      121 gaactgctga ctgacaaagt gtgtagtgca gtatttctgg ctctctaatt atccttttcc
      181 ttcttgactc cagtatcaca tgtagccatg tgtagaatca taaaataatt atgcagtgta
      241 caagctttct gggagcatgt accactgttt tcctaattct ttatcgctcc cattgatcgt
      301 ggcgtgtgtg cattgatcca agtcggccat ctggttgggg aagataagcg tgcgagtgtc
      361 tttgcattgc actgtcactc agggaggggg gtacattttg gctgtaggga attacagggg
      421 caggattagc cctcttccta ggagtaaact gaattttaaa tgcagtgttg cagctgcatg
      481 gaccatgttg ctaacttctg gttttgccca cagagtgggt gc
//
LOCUS       KCOD01000949             654 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 106001pyr ultra-conserved element
            locus uce-750, sequence.
ACCESSION   KCOD01000949
VERSION     KCOD01000949.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 654)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="106001pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>654
                     /note="ultra-conserved element locus uce-750"
BASE COUNT          212 a          102 c           97 g          243 t
ORIGIN      
        1 aagttgttcc tcattgatat tttgttgctt aaagtataat ggtgtaaaga taattatttc
       61 agttagtttt gtgtctctgc ttttccagac actgatctca aattgccttt ttcatgccag
      121 acaatataat tttaatagta actgtagatt taagataaca ttattcctcc agcatggttc
      181 ctatatacat gcatcttttg aatcaataca attaagcttg tctcctgttg gaattcttgt
      241 aattattttt cttgaaatac ttttcctgta atgatattga agttaaagta atcaggttac
      301 tggcagatca tgtaaaattc aactcaaaat tgctggctgc ttgattttaa tttgtctgac
      361 atcaagtttg tttgaaaagg gataatatgt ggttaaacca aggagcttat aattatggtt
      421 gacatttgtt tgtttataat gaaatctaat taaagttcat acattttaaa acaccaaagt
      481 taattactga attgctcact tcacttatgc acagcagtca aattaacttg cagaacaatg
      541 acaaaagact atgcataata acaaaatgcc cagctgatct tggcaataca aaacaaattt
      601 gccatgataa tattctagaa gtgctttatt aatacccgtc ctgtattttc actg
//
LOCUS       KCOD01000950             456 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 106110pyr ultra-conserved element
            locus uce-1058, sequence.
ACCESSION   KCOD01000950
VERSION     KCOD01000950.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 456)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 456)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..456
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="106110pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>456
                     /note="ultra-conserved element locus uce-1058"
BASE COUNT          142 a           82 c           83 g          149 t
ORIGIN      
        1 cccagagcct aattttatgt gcctgggagt agctatctga gcttcaggca atacaaacgt
       61 tgctattact ggggagtaaa agctctgcat aattaacaaa catcatcagc cttacagttc
      121 ctgtagaatg tagtaagttc cttgcctgaa ggctgctctc agcctagtaa gtctgtttac
      181 cctgtccaag attagattag tttaattatt atgaaaaaga ctgctaagat cttacagcct
      241 aattatgcaa atgtttctaa atgttcacaa aagtaattta tttatttgga gataaatgaa
      301 tctgttttgt cataaaccag attgcagtcc tggcaatgta caagcagggt tatgtgccct
      361 taggcatatc tttcaccaca aatatcagtg ggacccctgg attacaacat ttgtaaatac
      421 ataaatgttt tttagcaggt tttataaatt atagta
//
LOCUS       KCOD01000951             615 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 106221pyr ultra-conserved element
            locus uce-1582, sequence.
ACCESSION   KCOD01000951
VERSION     KCOD01000951.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 615)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 615)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="106221pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>615
                     /note="ultra-conserved element locus uce-1582"
BASE COUNT          201 a          115 c          105 g          194 t
ORIGIN      
        1 aaggagtcac tgaaaaatgg agtgttgatg tacatttgac ttcaaagaat gcgtggattt
       61 acatgatgca aatattatcc ctataaatac ttgaatataa ataagtagaa atcaactgca
      121 atatcctcat taaaaatcaa cccccaatat tttatattaa tactgttgag ctgcccataa
      181 aaattatttt aatctgcaaa ctgtggcaat tctataaaac tacaagtttt gctcctgagg
      241 gttccttttt ttaacacctc tctctaatct gccctgcctg ctgagtagca ttgacatcag
      301 tagtacatca atttcagaaa gtggattatt tttactagac agctattgtg acatattggg
      361 tcagtcataa atgaaagata ttcatgcaag catgcaatac ttgtaatgaa gtctcactct
      421 gaccttctgt atgattgatt ctgtaattta gttttctcag gcagtgcctg aaatgaaatg
      481 aaatcatgtt gaacaagttt tgaataccca cagtgcacca ggagaagaaa aatctgcagc
      541 cccagaggct tgagagagag cagctgaacg atttatctcc atgctattat agcctttgcc
      601 agcattcaac atttc
//
LOCUS       KCOD01000952             849 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 106333pyr ultra-conserved element
            locus uce-550, sequence.
ACCESSION   KCOD01000952
VERSION     KCOD01000952.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 849)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 849)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..849
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="106333pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>849
                     /note="ultra-conserved element locus uce-550"
BASE COUNT          275 a          110 c          188 g          276 t
ORIGIN      
        1 attattggga attagtttaa attgtatgaa aatgatgctt ctgtaagcaa tacagagaga
       61 agctaatact cttatttaca ttaaaacatg tattttgttt cagagaaaca aacagctatt
      121 aaacactaaa tcctacaatt caggatgggt ggggaattaa gtaggcaatg gaatgctact
      181 ctgacgtgca gagttgtgag tttacattat agtggcagta tccaatcatt tttaattctt
      241 ttaattactg aactctccag agtacataat ggtgtggaat atacacatgt atctgtaata
      301 aacaacatgt atcttgaaga aatggattta gttttggcaa caacgtgata gggagatcaa
      361 agacctagct ggcattaaaa tgatttagat acatttgtca taggcagctg ttatgctaat
      421 ctcatttatg cagttgtcag ctgataggtt ctgatgagcc agcttagtgg gaaaatcatt
      481 agtagatccc tattgtgata aatgttattt attactgtca aatggtatta atgtttgatt
      541 caaagatggg aaatgggcat catctacatg aagttcatcc attcatggtc aatgatgaca
      601 aagggagctg ttgaattcca gccaaaggaa cttcatttct gtaagaaaaa agaataatgg
      661 atttaatttg catatgtttt aaaagggtaa tgaagtaata tgatgtttat cttggttgaa
      721 gagtggtaat ttttgctggc atggctccag caacatttga gtcattgtgc agcatttgct
      781 gttcagttgt tggttgtgga aggggctttt caaagcagca ggtgcataag gggggaggaa
      841 actaaaatg
//
LOCUS       KCOD01000953             596 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 106441pyr ultra-conserved element
            locus uce-6719, sequence.
ACCESSION   KCOD01000953
VERSION     KCOD01000953.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 596)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 596)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..596
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="106441pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>596
                     /note="ultra-conserved element locus uce-6719"
BASE COUNT          164 a          107 c          146 g          179 t
ORIGIN      
        1 agtaacattg gtggtattct ctgcaggtag ctctgaggat gtgaggctgc cctcgattgt
       61 gacctcataa tttccagaag caggtggagg tggcaattat agctatggcc actatcttga
      121 accttctgta gtaggtgatg aattgtaaat ggctagaccc ggtgcacaac aataaactca
      181 aataaatctt caatgtgtaa taatgacaag actgaaagac tggcagttat aacaaggctg
      241 ctgttgtcac ccactttact gtagccttga tatccatcat tatcagctgg agctagctca
      301 ggagtcggac aagaaggtct gaagaaggat gagttgtttg cgctgaagcg tccagtaggt
      361 cccatctggc agagagtaaa tgggattttt ttgcctgttc actgggccag agctgtccat
      421 cattttgggc agatatctga tcacttcatg ctgtgggaca atatggcttt gtgctgtttg
      481 gtacagcaat ggcaattaaa ataactaaat ttttcattta tttcaagctt tttttttagt
      541 tagctgaagg agatcctaag aagggatctt tacattagca gagcgattca ggaagt
//
LOCUS       KCOD01000954             820 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 106541pyr ultra-conserved element
            locus uce-371, sequence.
ACCESSION   KCOD01000954
VERSION     KCOD01000954.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 820)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 820)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..820
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="106541pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>820
                     /note="ultra-conserved element locus uce-371"
BASE COUNT          248 a          185 c          145 g          242 t
ORIGIN      
        1 ttcctgtgca tcacttagtt agaaatgcaa agacgcttgt actatgaacc ctggcatctt
       61 tgaactgctt ccaggaagga tgtggtgtac atattaaatg agcatcatga gtaggaacat
      121 taaagcagtt gaaatgaaat taaattcctg gatttggaat gatccatttc tttcaagata
      181 aaaatttagc tgctgccttt tcagcgtgtg ctgcatgttc tgtctaagat taatcccaca
      241 ggaggttttt ttatttccta ctctgcctat ctttcatctt caccccagac taagcagatg
      301 gatgtgaatt caaagttttc tgatctttag cacaagttat ggagggttat ctttggctgt
      361 atatctttct gctggcagca ctcccttggt gatgaaggat taaccaccac agctgtctct
      421 tcccagaatg atgcagtgca gcgctcctca acacgacagc atcacttaat cttaatgtcc
      481 gctcttccag cgcagccgcg caggacaaag ccaatcaaca tcagatgcca ccaagatgga
      541 cctactgctt ggccctggag tctttcaccc tcacacacct attaatcaac atcatccaga
      601 ccaatcccag tgttcacttc tttcaaacca cagttaaact aagccaggtt ttatattaac
      661 agaccgagag atacagaaat ctacccagag ataaagcatg cataggcaga actgtagagc
      721 aaattcaaat cgagttttaa actccttatt tacaaaacaa aggtgtttat tttgttttaa
      781 agcataacta caatttctaa tattgaaact caaaaataag
//
LOCUS       KCOD01000955             581 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 106639pyr ultra-conserved element
            locus uce-3368, sequence.
ACCESSION   KCOD01000955
VERSION     KCOD01000955.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 581)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 581)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..581
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="106639pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>581
                     /note="ultra-conserved element locus uce-3368"
BASE COUNT          187 a          112 c           92 g          190 t
ORIGIN      
        1 ccactaaaag taactgtctc actgcacatg atgctatttc cacttgcaat tagcttttat
       61 tgtacaatgc tgccaggtgt ttagaagggc ttctctagac actcagccat taaaccaagc
      121 tctgactatc aaagagactg cttaatttat ttttaagatt ttaaaatatt cctattccat
      181 gatggacatc ctttcaataa ctgaatttaa taaagatgta ccttatcagg ctgtgcagat
      241 aacatgaagt cctagtacta atgctgtaca atattcttca aacagattaa caggatgtgt
      301 gcttcagcaa atttattctg tctatctcca ctgaatcagc tgtctgctaa tgcttgtaca
      361 actcatacac caatagtgtt atcataaaca caatttaata gaggtgactt agtgaggcta
      421 gatataatat tccaaaatga actgaaggct aaggtattgt ccaccatctc tgaaaaataa
      481 ttaccacatt ttggaatcta ccaagacagt ctgtggttgt caaaataggt gtctctttga
      541 tggatatgtt tttatagttc ttgctaccaa cagcaacaat a
//
LOCUS       KCOD01000956             649 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 106748pyr ultra-conserved element
            locus uce-7125, sequence.
ACCESSION   KCOD01000956
VERSION     KCOD01000956.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 649)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 649)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..649
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="106748pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>649
                     /note="ultra-conserved element locus uce-7125"
BASE COUNT          178 a          117 c          108 g          246 t
ORIGIN      
        1 tggttgttta ctcaaagttc caagcatcac ctttgatttc aagggtgggg atgccctaag
       61 agtttgttcc agaaccagtt ggttacaagt gcacctctta tatatgcctt acaaacttca
      121 gaggccatat tcaaaacagg gttttatcag tgtatgcaag ggggtgcaac ccctcttctc
      181 ttcctcccca ggtcaaacag tatggacagt tttcacacat atctacctgt ataaccctct
      241 gtacctctca taactggtca atgactgtaa caggttacat caggtgtttt ttctacatac
      301 tttttacaca aattctatgc gattaatgta acttaattca atgcatcatt ttattgtact
      361 agttcttaag cttgtcttta tttttttttc taggtgactg tggtttcttg tgatttttat
      421 tgtataaata aatgaggtgg ctgttgatgc ttactctctg ttactaagaa tttttacctt
      481 tttggaagaa agcattgcta tgaactaatg aatttaaaat gtcatttact cattgtaaat
      541 acagtattgt gcaacccttt tcattcattt gaattgctag tgttaactga attttgtcta
      601 gacaccattt ctgttgatga aataaagaca tatcattatg tattgtaaa
//
LOCUS       KCOD01000957             340 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 106852pyr ultra-conserved element
            locus uce-4401, sequence.
ACCESSION   KCOD01000957
VERSION     KCOD01000957.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 340)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 340)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..340
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="106852pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>340
                     /note="ultra-conserved element locus uce-4401"
BASE COUNT          125 a           82 c           49 g           84 t
ORIGIN      
        1 tttctgcagc cccaacagca cttttcacag tcaggattat tctccacatt gttgtctgca
       61 gtcaaagtca ctcaaaaatt cctatggtcc cagcagcact aaaaatacat aacagcctcc
      121 ttacaataat ggctgtgaat cacagcactc ctcagctgac ataagtagtt aaaatagttt
      181 aaaaaaaagt taaaataaaa ctttttaaaa gttcaagtga aaaatgaaaa aaggttgaaa
      241 aggactcccc taccgtctaa caatattaaa gtctgcctca aatttacaaa cgtactcagc
      301 aacatcaaac gcgccggctt caaacacacg cggcagcttc
//
LOCUS       KCOD01000958             497 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 106951pyr ultra-conserved element
            locus uce-738, sequence.
ACCESSION   KCOD01000958
VERSION     KCOD01000958.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 497)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 497)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..497
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="106951pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>497
                     /note="ultra-conserved element locus uce-738"
BASE COUNT          139 a          117 c          109 g          132 t
ORIGIN      
        1 tgcaaggaaa acacttccca ctctactaac agctatggca catacttcat ttttaatctc
       61 tggaacttat tggttgctaa atcatgtaga agtatagaca aaacctctag cactgctgct
      121 cttttagtgc ctgtgacctt gaagccgtga tgagccacgg agatgctaca aaatgtacag
      181 gctccaccag atgagggact ttgatgctgg ggggagctct ggggtcaagc gcagaaaggg
      241 gaaataaatg gtaaaatcac tgtctctaga ctcctcagat aaaatggaaa caagcacttg
      301 gcattttcag tgctgacaac ctggcttgtt tgttcactct aatgagcact ctggctccat
      361 taatgagcag actgaatcca ttatcatcat catttcaaaa ggcagcgtgc cactaaatag
      421 cttcccatat tagcaggcat tgcccttgtt gttccatttg atcagcagtg gcagcaggga
      481 gcccgctgta ctcccac
//
LOCUS       KCOD01000959             520 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 107054pyr ultra-conserved element
            locus uce-7205, sequence.
ACCESSION   KCOD01000959
VERSION     KCOD01000959.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 520)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 520)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..520
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="107054pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>520
                     /note="ultra-conserved element locus uce-7205"
BASE COUNT          122 a          111 c          135 g          152 t
ORIGIN      
        1 tttttttagt tccatttggg ctgttgggat agtgactgtc tcagtgcaga ggtctgaggt
       61 gagaagcagc ttaaaaaggc tgtgtggcat gtgaggaagc aagttagctc ttaatcatat
      121 catattggcc tcctttgcag ctgatacatc tgctgtaaaa cgcttagtgc tgagtgcctg
      181 attgggcagc ccatgctaag tgttcaaact cctgctgcct tttttcttca aacaatatct
      241 tctggcttcc agatttctga taaattgata agaggaattg cgtgagtcaa tagagttgta
      301 gacactttgc caatataacc ctagcgctat tgatctgcca gtaaattaaa gtcttactta
      361 gaggctgccg atatttctaa tctcctgcct caccaattac accctcccag ctacctggga
      421 aagacagcga tgggagacga ggctgccgag gcttttccaa gcaggtcgtg gcgtggcagc
      481 tgtgtggggc cggggtggca ctgagcctgt tgggaatgct
//
LOCUS       KCOD01000960             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 107162pyr ultra-conserved element
            locus uce-7629, sequence.
ACCESSION   KCOD01000960
VERSION     KCOD01000960.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="107162pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-7629"
BASE COUNT          234 a          106 c          122 g          240 t
ORIGIN      
        1 ctcctctgaa ccagttttta taatgtgcat ccttaactga caataagtaa ttggaaaaga
       61 atttttgtat ttgtaaggtt tgaccttgac attgtttgtg taggcctcca aagcaattat
      121 tgtagaaact gagatggaaa acgaaaagca gacagaaatg cttgaattag tgcaaatcac
      181 aaacatagct gaatggtatt agatgacagt ttgcttttaa tgagggaaga catgaagtaa
      241 ttaaatcttg acatacaatt atgaaaaata tcaggtaaca agcctgctat gcaatataaa
      301 ataagaaacg acattttctg aaaacttgcc tgatgctctg tcatctgaga ctgttcttta
      361 tgagtgcagg gtgaaggtca aggaggtatc tcaactccat caatcctttg gacagttaca
      421 aatgaccttt cacttttcat aagacattca atattctgaa tgggggggat acatttttct
      481 gtgtttagaa aatagcaaaa ttgaaacctt ttatactgta caaggtgcat ttgtgtttgc
      541 atctcttgaa cagctcattc atttttaaat gttcattgac accaatatct catttacatg
      601 aagtaaacat tttaaaatgc tgtatctgtt tcaacatgta ttttaacttt tcatatttgt
      661 attgcattaa ttttcaagaa atgttttaaa atgctatagt gc
//
LOCUS       KCOD01000961             675 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 107273pyr ultra-conserved element
            locus uce-6071, sequence.
ACCESSION   KCOD01000961
VERSION     KCOD01000961.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 675)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 675)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..675
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="107273pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>675
                     /note="ultra-conserved element locus uce-6071"
BASE COUNT          191 a          170 c          170 g          144 t
ORIGIN      
        1 ttacctagaa ctactgcaaa gtgtgagaac atcattctgg tttcagttcc aagataactt
       61 aatgttcttt aaggctggaa gagaacatag tttcattaca actgcacata tttttgtatg
      121 aaatgagcat ctcaaggcaa gggaaagaaa gcagcattgt tccagggctg tttttcacag
      181 gcctgtattc atatctcatc cttgttgttt gcaggagagg cagatgtgaa ccagaacaat
      241 gggacctcca cgaagagccc agcggtgaca gactccaaag gcacagcaga cccgaagaat
      301 gcctggcctg aggccaaccc agctgacagg actggtcgcc cccacttgat ccgcctcttt
      361 tcccgagatg ccccaggaag agaagacaac accttcaaag atcggccctc agagtcagac
      421 gagctacaga ccatccaaga ggacagtgca gcagcttcag agaattcgga tttgatggct
      481 tcacaaaaac gctcctcttt ccggcacgga tcaaaaatgg catctgcgag cactatagac
      541 catgccagac atggatcccc acggcacaga gactcgggtc tacttgactc gctgggcaga
      601 ttctttggag gtgaaagaca cgttccccgg cggggctctg gcaaggtgag ctctgaggaa
      661 tagagaactg cgagg
//
LOCUS       KCOD01000962             616 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 107382pyr ultra-conserved element
            locus uce-3068, sequence.
ACCESSION   KCOD01000962
VERSION     KCOD01000962.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 616)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 616)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..616
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="107382pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>616
                     /note="ultra-conserved element locus uce-3068"
BASE COUNT          187 a           98 c           94 g          237 t
ORIGIN      
        1 agttaatttg ttgatattaa ttgaatacta ttttaactca ttctcatcca gtatcagaca
       61 gttggttttg atatggaatg ccccttttat agacttggca aagaccatca gtttatggcc
      121 tgtttcgttt cttgccagta gacagcactg aaagttataa aactaaaaca attgctttca
      181 tttatatctt ttcctgatta ctctgatagc tgaaatgtct gaagaagttc agaatctgta
      241 aagcctgtca cattatagaa acatgtctct ttaaactaaa tgtgaaattc cagtaattga
      301 agtgataaat ctactgtttt tgctggggta cttttgatga gaactatagt agtaaattag
      361 aaattattct ctgctgttat atcatggtaa aagcctttcc attatctgtt gtcagtcact
      421 aggtatgggc aaataactca gttgtcaatc taactgtgaa accttaagtt ctgggaataa
      481 tcaataaggc aaaaactctc tattatcttc atgtaattct ttagacaact tgaagttgtt
      541 ttttcccttt ttatttctgc acatctcatt tattcacaga tatatttgat atcttagaat
      601 atttcatttt ttatag
//
LOCUS       KCOD01000963             672 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 107494pyr ultra-conserved element
            locus uce-4891, sequence.
ACCESSION   KCOD01000963
VERSION     KCOD01000963.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 672)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 672)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..672
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="107494pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>672
                     /note="ultra-conserved element locus uce-4891"
BASE COUNT          249 a          110 c          111 g          202 t
ORIGIN      
        1 ttactgttct aaccaaagat attttatata aattaagagt ttgtttaaaa aaaatcgaaa
       61 atgggaactc aattctagac aatgcttaat ttaaactaag tgttaaaata aaagcaataa
      121 cactgagaat aaattaatga actacaatta actatattta caataagtgg tttggttgga
      181 aacacctatt ccctgcactg ataaaataaa acctgcattc tgcaaaagct ggaataagtt
      241 aaatgaagat gcttttaaca aggttattac ttaagcagtg acaggtttac agattttagc
      301 accactgggt tttcacagga gctgcagcaa gtgctaaaat aacacacacc ttcaggttca
      361 ttaaattcac cagtgtgatg aaataacttt ttctatatta ctatagtgcc tcaaagaact
      421 gactataaat aagatacact aataacaact gtttgcagtg ctaaaacaat aaaataattc
      481 ttccaggctt atatgcaaag gaagaaaagg cagactgtta gcagagttct atctggtggc
      541 tttaattcta ctggtgccat gccttcagcc atttacttat catagaaatg ctctataaaa
      601 tgttttatca ctcattgtgg caggaagaaa tttgtttaaa ggctacataa agagggggct
      661 cccgtcccga aa
//
LOCUS       KCOD01000964             890 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 107603pyr ultra-conserved element
            locus uce-415, sequence.
ACCESSION   KCOD01000964
VERSION     KCOD01000964.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 890)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 890)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..890
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="107603pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>890
                     /note="ultra-conserved element locus uce-415"
BASE COUNT          325 a          153 c          133 g          279 t
ORIGIN      
        1 atcttcaact tataatgtca cataccttga aaaacaaaac aaacatttgc tacaaaaagt
       61 cagcaataaa ttttttgaaa atcatatatg aaaaaaattc tcttaatttg aaatagtgat
      121 tacagcacct acagcttact gtgtttttgt taatgccatg cgacaatcta agaaaataaa
      181 ccacagtttt cgtatatcaa tgtaaaaaat tactgatctc aacttgttag tttacaaatt
      241 gtagataatt gtaaattagg gtaagcaaag catgcaaatc tatagattct atatctgaat
      301 tcctagatta gcattaaaac caatcaccgc aacaaatacc tcaacagtat gccttgtgtg
      361 cagaaaggaa gcgatactga acattcaatg ccacaactgt aaggttttcg gagaagcacc
      421 tgtggcagtt tcagcagttt ctatatggaa tgctccccct ttctaggatt acttgaaaaa
      481 atcaagtcaa ttcgaattac gtagctgtaa aacattgaca tgtgtagttt ttacagtttc
      541 agaatcttct gtttgattta aacgggcaat ggtgcataaa caggaaactt atatcataag
      601 ggatcacata tttgcaggca acattaagat ttacattaac atacataaag tgctgtagca
      661 cattattcaa tatgtaagcc attgtcatgt gaccacctta acaacaagat actaagcctt
      721 ttatgccttt aaaagcaaac tttcatcctg aaaccaattt ttcagttctt cactgaaatt
      781 tatatagaat ggattaaagt tactggtcaa ctcatggctt caattacttt aaatttagta
      841 ggctgtatct caaaagaatt agtagctaaa aattagcaga tacaaggatt
//
LOCUS       KCOD01000965             651 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 107715pyr ultra-conserved element
            locus uce-3211, sequence.
ACCESSION   KCOD01000965
VERSION     KCOD01000965.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 651)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 651)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..651
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="107715pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>651
                     /note="ultra-conserved element locus uce-3211"
BASE COUNT          199 a          119 c          129 g          204 t
ORIGIN      
        1 gaagaaaagt tgtagtactt gttccttccg ttccaagaca tgctaagcaa gtcacttgcc
       61 ctttcttatt cagagtgaaa attatttgat ccagttttct gaagacaata ctcatttcat
      121 aagaatattt agacagtaga aaatagagag gatttagttt gtttgtttag tatttagcca
      181 agtgaataag gcagattagg ggaaactgga cccataaaca aggtgatata taatattttt
      241 tttcgttctc cttttaaata aataccgatc agctttatgt tcagagacaa taggagccgt
      301 tggcttaaat ttgcagttta ctgtatttat ggctgtaata tcaaggtgct gccgtcgtaa
      361 tttcatgccc caatgagaag agcaaggtcg aagcaaatgc ttccatcggc atctgctaac
      421 acactaactc ataaacaagg cccggctgga tcaggtggca cggaataata caggctaatg
      481 aaatacagca cagctttcca ttactgttag tttttacagt gtcgtcatta cgtgtaattt
      541 atgtttaaaa aattcaattt tatacaaggc tctgggaaat aggggtctgc aggtcacccg
      601 acgactttta acggctctga gagtccttat tgcactctac tgttccaaca a
//
LOCUS       KCOD01000966             714 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 107825pyr ultra-conserved element
            locus uce-4327, sequence.
ACCESSION   KCOD01000966
VERSION     KCOD01000966.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 714)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 714)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..714
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="107825pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>714
                     /note="ultra-conserved element locus uce-4327"
BASE COUNT          228 a          164 c          128 g          194 t
ORIGIN      
        1 catttaaaga ggcaaacaca tcgtatattt catatttatc atcttgcaaa agctaaataa
       61 aacattaatt agaattttat ctgggtaggt acgtagcaac tactgacact gatgtgagta
      121 actgaatata atacagagaa ttcagttaat catctcctta cgttgccatt ggcacataaa
      181 tttgtctcat tagcaggggc tacttagttc gctgtagtaa acaaagctgc cgatcctcgc
      241 acactttttt tctttcctca gcctgctagc atgtgtcata gaagagccga aacattcctg
      301 gagtgtcaca atatgtaata caataaaaca gattacaacc atacctttct ttcacagcag
      361 tggtgccaag cacaggtaca ctgtagcaat caatttgttc tgcagacagt aaggctttca
      421 tagaatacta atgcaaaacc tcttttcttt ctccttcgac ttgactcccc aatgcctggg
      481 tcccgaccaa tacaaggagg agggcagaat gtcttctgct gagataacca caactactaa
      541 tcaagtatac gtgtacaagg gcacaggatt aaacctccac cgggcttgac tcgggcaccg
      601 agagcagctc aacacatgca cagcaaggtc agaattaaac acacacacac acgagtgaac
      661 taatttatac actttaccat ttttacctcg gggagtaaaa ttacatcctg gtga
//
LOCUS       KCOD01000967             209 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 107933pyr ultra-conserved element
            locus uce-2932, sequence.
ACCESSION   KCOD01000967
VERSION     KCOD01000967.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 209)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 209)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..209
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="107933pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>209
                     /note="ultra-conserved element locus uce-2932"
BASE COUNT           74 a           32 c           33 g           70 t
ORIGIN      
        1 accagacctg catttttgtc tttaaaaaag gactatgaat gaccaaagac taacatttat
       61 aattttatgt agaaacaagc catgttttgc atttggatag atttaaatga attaaagcta
      121 aaaattaaaa agcacgatgc tgcaacatct ggtcacttgt tgaagacctc acttttaaag
      181 tggttaaggc acaatttgta cttttttct
//
LOCUS       KCOD01000968             475 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 108041pyr ultra-conserved element
            locus uce-1867, sequence.
ACCESSION   KCOD01000968
VERSION     KCOD01000968.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 475)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 475)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..475
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="108041pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>475
                     /note="ultra-conserved element locus uce-1867"
BASE COUNT          128 a          103 c           88 g          156 t
ORIGIN      
        1 tttactccat ttcatgcaca gtatattttg caaatgtgag ccatgcacat gcagacaccg
       61 agggtatgtg tctgtattta ctggtgtttg ctgcagtcaa aacaccccaa aaggctttag
      121 aatttcaaaa actaaggtag cagctcactc cattctgatc tcggttgtat atagtgccat
      181 ctgactgaag atactttggt agcctgtgaa tgatggaatg ctgaacacct acacaccctt
      241 attccagtaa tggagaaagt tcattggctt aattcttctg tacttcgtag ccatagctcc
      301 actgtgtgtt cagtatgtct ggtctctttt cactttaacc aacagaagca ccatacaaaa
      361 gtcttacaat ggatgtctta atctctctgt gtgcttttag agcattattt tgaattccat
      421 catgcaggct tctcttctga agttttatta caacaacaga attcccaggg agctt
//
LOCUS       KCOD01000969             703 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 108147pyr ultra-conserved element
            locus uce-2903, sequence.
ACCESSION   KCOD01000969
VERSION     KCOD01000969.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 703)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 703)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..703
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="108147pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>703
                     /note="ultra-conserved element locus uce-2903"
BASE COUNT          212 a          135 c          137 g          219 t
ORIGIN      
        1 gtattaaact ttcacatgga agaaaactga ctgagaaagg ctacataact cttctaaaat
       61 cacctatgca gtgcaggtgc agcagttgtc tgcaaacagc cagttgtctt gcagacaata
      121 gtctcactgt gtgacatgcc ctaaattttg aatcttattt tctgactgca atgtcagact
      181 tcctaggtga cttcttcccc cttccccctc ctttaatcta ggataagtgt ttctgactta
      241 taattattaa agagggtggt aaaactgcac atattgaaga acagattctg tagtagtagt
      301 agtagctggc agaaatgtta agtgcttttc acagtcaaca ttcaaacaga ttatcagatg
      361 gcatatttca ccctgttgtt actttaaatg aagtgaccat gaaatcaaca aatctgctgt
      421 caggtgcctg tcacggagat agttctccct gtcacacaat gcctcacata acaggtaatg
      481 tgtttttaag aatcagtcct gtgtcacctc atcaagtcct tgttaaaaga tgaaataaga
      541 cggatggtgt tgtctcccat ggagttgact gaaattcagt aaaagcaatg catgtgtaaa
      601 ataggcagta agatgccttt tgtcttgaga attttttcct gcttcctttc tagactgaaa
      661 gggtcaagtt taaattttgt gataaggaca ggaacaatta atc
//
LOCUS       KCOD01000970             866 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 108258pyr ultra-conserved element
            locus uce-1613, sequence.
ACCESSION   KCOD01000970
VERSION     KCOD01000970.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 866)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 866)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..866
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="108258pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>866
                     /note="ultra-conserved element locus uce-1613"
BASE COUNT          304 a          153 c          180 g          229 t
ORIGIN      
        1 gtctgacagc ggggtttgga ggaggagagg caaacctgga gcaaggcaag ggaaggaaca
       61 tgcacgggat gtgtggaaag aggaaacaaa gagacagcga caaggtgaaa tcctttgata
      121 tttcctcagc ttaaagaggt aattcaatgc attaaaatgg atccttgaaa tttcaaagga
      181 tgaaactcgc acaacaaaga ttgtcgagag tgctattttc taggattaga acaaaaacgt
      241 attgggattt gctatatgat ctcacatcgc cgagcaagac tgtacacttg ctgttatgca
      301 agcaccatct tccaatagag aattttcata attataacag aaaggcgtaa attttctaat
      361 gcatggcagt tcaaaaagta atcaagagaa tgagcctgag ggctatttta atgtatgcaa
      421 agctagtgac ccacagtaaa tgggaggtag gcttcaatga atgcaaagta atgcacacat
      481 actaaagacc tggtctgatg agggacggct aaaattaaca cccaattaat ttccgaattg
      541 acaaacaaat gaaagccata aatctacttt ctcattaatt ttcttgtggt ataatttaaa
      601 gcagtaatat gagggcaaaa actgagcatt atccatcata aatatcaaaa aagatagcac
      661 tgtaacacca taaattatgc atattacctg ttgttaaaaa tgattaatgt attatcaact
      721 ttatcgtgca ctgtatatgt ctagacgtat ctaaaatctg aaatttcatt tagtgcttag
      781 gaaataaagg gtccagaaga aatgcgatta cgcgcagcac atccttggct ctgcctcctg
      841 acgctctcac ctcggctgga ctcatc
//
LOCUS       KCOD01000971             503 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 108368pyr ultra-conserved element
            locus uce-6412, sequence.
ACCESSION   KCOD01000971
VERSION     KCOD01000971.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 503)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 503)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..503
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="108368pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>503
                     /note="ultra-conserved element locus uce-6412"
BASE COUNT          164 a           97 c           81 g          161 t
ORIGIN      
        1 attattattc agatttttcc ctcaaagtga tcacatttgg atgattaggc tacatttggc
       61 caacactcca ccggctagaa aagccttcct cctttgtata ttcagaacaa gtttcatgag
      121 aagtatctca aaaacatctg ccttcattat aattatattt ctatttcagc tgcaccaagc
      181 tatttacaga tgagcctgtt cataaagagc tttataatta agcaaacaga aatatctttt
      241 tataggatgc agatctaggg gtgataatca cacacaaaat acacagcaac agttgcaaat
      301 agagcgttta atgctagtta tatagttagt gatgtgctca ataaagcctg acatgtcttt
      361 gttcctaaat gtaagaaaat atggtctttg ctacacaact gtgtaaactg cctttttcat
      421 aaaaaggcca tatatttcag ggggtatggc ttgaaatccc tcatgaaaac atgccctcat
      481 gtctccaatg caatatgatt atc
//
LOCUS       KCOD01000972             639 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 108478pyr ultra-conserved element
            locus uce-7425, sequence.
ACCESSION   KCOD01000972
VERSION     KCOD01000972.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 639)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 639)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..639
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="108478pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>639
                     /note="ultra-conserved element locus uce-7425"
BASE COUNT          191 a          134 c          112 g          202 t
ORIGIN      
        1 ccaggcttac atttggcatt agcacctaga gttaaaaggg gaatttgact gtttagtcct
       61 ctctggatga gatgtatgga aaacagtcca ttaaaatatt ggttgttgca ggcagactgc
      121 tacagatttg cttttgcaaa gcaacttttc ttccataaaa tcattctctt ttcttaagct
      181 acagaagcag cataaaggtt gaaattttcc attatgattg ttacctggga agtagcactg
      241 gttctagact ctgggctgcc actgatgtct aaattttctt acagtgtaca cacgaatacc
      301 tgaaacacac acgcgcacag tcaattacta gatcactttg gtaacacgta tttcaacagc
      361 tgcacgtatc ctacctttgc agtggccctg gctcggaatt cggggcagcc attaacagtt
      421 atggtttcat gcatgtattg atacacctaa aatgttcatg aaaataaaat gaaattaatt
      481 atagaagcaa aactatacta accttccttt ctgtcataga actaactttc attaatgctg
      541 tcaatcacat agtcaagtgt acttgagcat gcccaggcta acagagagta tcaatctgtc
      601 tttctcatta tactttccaa acttaacttt gtatcctcc
//
LOCUS       KCOD01000973             897 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 108590pyr ultra-conserved element
            locus uce-711, sequence.
ACCESSION   KCOD01000973
VERSION     KCOD01000973.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 897)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 897)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..897
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="108590pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>897
                     /note="ultra-conserved element locus uce-711"
BASE COUNT          297 a          139 c          198 g          263 t
ORIGIN      
        1 aaaatgtgag ttaggtgtta taaaacaact ggtgggtgct tgtgtgcatg tgaaatttgc
       61 ttacacgagt aataccactg atttaaatga gagcattcaa gtgacgaaaa caggttcaac
      121 gtgagaatgt ttagaagatg gtgaccttag aaacgaacag tcgtctttgt aagtattcag
      181 agggggttat taaaacttaa agctgagagt tggcgtttga aggcagaagc agctagagag
      241 gtgtttgggg agctcacctg ccagataata atgctaatga tgctggttaa ctctgcatca
      301 actttctcat acttatgggg gaagggatga gggcgagaga gggacggtga cagcaaggct
      361 gtttgttttt cccgaaagtt gtttgtgatt tcaggtactc atgggaaatc tcttgatcag
      421 attcacatct gttcctgtca aagtgggtgc taagataccg gtcacccagc aaccatgtcc
      481 aagagggaat tgggccgata ataacttcaa aaaggaatga cagatgctag attaggatga
      541 aagacaaaac gcatgaaaaa tgagcttgtt agaataaaaa aattgttcaa gcaccttcat
      601 gcaaattaaa tgaatattga acatttgcat gcagtaattt ctactttttc tgttgattga
      661 gaagaaataa agacggtaca tataaaaaca taaatgtaat tttttttttt gcaccaatta
      721 acatacaaag cagtatcttt cttctaaaaa tgagattagc cacctgggtg cttggctgta
      781 tcccacatat gtcacaacat ttttgtaacg tgtatgcttc tgttgaagaa acaccttatc
      841 taattctttg tagcaaaaca aacaaggaag caaccttata ttaattttaa aatactt
//
LOCUS       KCOD01000974             390 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 108700pyr ultra-conserved element
            locus uce-1900, sequence.
ACCESSION   KCOD01000974
VERSION     KCOD01000974.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 390)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 390)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..390
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="108700pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>390
                     /note="ultra-conserved element locus uce-1900"
BASE COUNT          149 a           67 c           75 g           99 t
ORIGIN      
        1 gagcagggca gggagctcag gggaagcagc cacacaacca cgttctatac aagccattta
       61 tttgaaatgc caactaagga taaagtcagt gttacatgct tctcagcaac agtagaaaaa
      121 tagaaccagt gaaaaccttt ttacaactgt aatggtactc aaaagagaaa tgtattgttt
      181 tacaatgcat cacacaagac tagaattcaa gtttggaggt acctaaataa aaatactaaa
      241 aaaacactat gtacaattga agcgtaaaca agttttacaa agtactggtt atgcaggttg
      301 tagaaaaaac acttgcatag gacatgaagt cagtttaaga aagttttctg agcctttagc
      361 attgaaggca cttgacttta taccagtaac
//
LOCUS       KCOD01000975             525 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 108806pyr ultra-conserved element
            locus uce-3505, sequence.
ACCESSION   KCOD01000975
VERSION     KCOD01000975.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 525)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 525)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..525
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="108806pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>525
                     /note="ultra-conserved element locus uce-3505"
BASE COUNT          168 a           93 c          117 g          147 t
ORIGIN      
        1 aagaaagcag tgcaaccaac actgcttggg gaaatacaat ttattcagat tcttttggga
       61 gtagggagga atttgaacac atgtaacgaa acgtggtcag tttgatctgt taaactaaaa
      121 tggcagacca gcttaagtcg acactgagct ctgacaatca agcccaggga accagtgaag
      181 gaacttgtat gaacttacag cgcaaaccgt cagcagactg ggaagagttt tgagggttac
      241 ggtaaatgtt caagagggca atggtctgaa atacaaaacg caacaacttt atattatgga
      301 aaataatttt aacaagaaac tggtttcctt tagggtcgct ttagccgagt ctgtgctgaa
      361 agagaggtgg ttattctctc ccaagcagga gaacttctgg tgacctttct acatcaacct
      421 aacactgtaa agtaatagag atctcatgat attattgtat tcttaatttt attccattca
      481 ccaatattgc tatagagggg ttttgcatga tttcagacag ctctg
//
LOCUS       KCOD01000976             394 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 108913pyr ultra-conserved element
            locus uce-2846, sequence.
ACCESSION   KCOD01000976
VERSION     KCOD01000976.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 394)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 394)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..394
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="108913pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>394
                     /note="ultra-conserved element locus uce-2846"
BASE COUNT          133 a           77 c           68 g          116 t
ORIGIN      
        1 aaagcattac tcaacagcct gttctgtaat ttaacagata cttaaaatct ctctcagtta
       61 cataaagaaa gtattcagtc aactacaatc aaagttaaaa caaaaaagtg cctgtgatcc
      121 aaggatcatt attccagacc tgttgtgaat cagtgaaaag gagagtagca aaggacatac
      181 cttggaactg ctcccaaaac aatcaagttg gctttttgtt tgttgtttcc aattacagca
      241 tttttcatat ctctgtaaat ccagaaagaa aaacaaaccc tggtaaatta tgctgaggta
      301 ctgagggctt atctatagaa tttactattt ccatgattat caagcagttt tccacatgtc
      361 catgctgcag ctacagactg ggcagtgctt cagg
//
LOCUS       KCOD01000977             627 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 109022pyr ultra-conserved element
            locus uce-2540, sequence.
ACCESSION   KCOD01000977
VERSION     KCOD01000977.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 627)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 627)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..627
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="109022pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>627
                     /note="ultra-conserved element locus uce-2540"
BASE COUNT          178 a          146 c          135 g          168 t
ORIGIN      
        1 cagctagaag tgagatagtg ctgccttttt ctccttaaac tcttggtgcc acgggtatga
       61 ctctaagtgc gccttgttaa ttgtcctcct gtttctgccc gtggctccaa aacacactct
      121 ccacaagtgg aaaggaccgc gtctgttcct tgtcaattcg catcagttta aggtcaggaa
      181 agctaacagg gaacaaggca ctgcagcatt tgaactcaac cttgccttcc caaggaacaa
      241 actgacaatt agtacaggga tcagcatcaa aaaagagcaa cccagcatga agcctgtcta
      301 attagtcata tgaacggagg gcttcccctc cacttcctca ggaacacatg cctgtcagat
      361 ctgatacaaa gagacttctc tccctaacat aatactgaaa ttaggttgag aacaggtagc
      421 cctgcttgtt taagcaacag gaggcttagc aacttgcaca gttgcagcgt gcttatgacc
      481 atgtgcgatt gcaggatgtt tccttccttg cgttggtcat gttgctaatc ttctcgattt
      541 aataacactt cttgtttaga tggaaaatga gcaaggggaa aaattagaga tgaaagctga
      601 atgacagtct cctaatctca gagaatt
//
LOCUS       KCOD01000978             703 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 109135pyr ultra-conserved element
            locus uce-6342, sequence.
ACCESSION   KCOD01000978
VERSION     KCOD01000978.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 703)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 703)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..703
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="109135pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>703
                     /note="ultra-conserved element locus uce-6342"
BASE COUNT          213 a          137 c          138 g          215 t
ORIGIN      
        1 ctaattcagt ggcttctact tttgttattc actaccaatt cctctgcacc cagcaatgtc
       61 aagaggtcaa caattaaatt gttcggagta caccatgatc gtaagagtga ccctatatta
      121 tatcttcatt ttttcccttt gatcatccct ttatttgact gcatttcagt aaattatcca
      181 tgtagttttt attttgacag ctctctttac agcagtaaaa caaaatgtgt gcattgcaaa
      241 tggcaaagat tcaaatttca gctatgttta tccaaaatag cactgaactg cttctgtact
      301 tatgctatac tgcctacagc cttacggaag gggagacaga tgggatgaat ttagcaggga
      361 aacagctgtg gcttgaagaa gagacaagca aaagttttgc tatcaggctt cattatgtat
      421 caaggtacca gtaaaatgtg tatccgtaag gcagccaaaa aagtgttttt catttgacta
      481 gtgataatta ccttttctca acagctgaca atgttctaag caccattaaa taggtataat
      541 aattaagcaa taagataaga caggcagtgc cttgctgggg attattgctc gcctcgggtg
      601 tgttgcaagg cacaaggctg aagggtgagt gacttcagcc acccgagaaa tgtaataatc
      661 cctcagaaat gcactgcctg gagtgtcttc ttgctatcaa aaa
//
LOCUS       KCOD01000979             689 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 109246pyr ultra-conserved element
            locus uce-3134, sequence.
ACCESSION   KCOD01000979
VERSION     KCOD01000979.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 689)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 689)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..689
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="109246pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>689
                     /note="ultra-conserved element locus uce-3134"
BASE COUNT          244 a          134 c          113 g          198 t
ORIGIN      
        1 tttgtattta aaagccctcg ttccttgata ggtctgtatg tacactgcaa ttatgcatgc
       61 atacattaag cactaaatga aaacaaaagg catttaacgt taattactct agaaagtcac
      121 catattgtga tcacagacag caccactatt gctgcccagc tagatactcc actttcatgc
      181 aaacaacata accaaattga attacataaa aagaagctac atactgactc ccagcagtat
      241 gttttgacaa aacactttgt ctacttaaat gatttcagaa gctgtagtca aaagccttga
      301 ctgcaaataa tgggttcata aaacctatct ttaaaatttt acctgacagt aatgctgtgc
      361 aaatatctgc acttctagtt caccttctcc acttgtttac atcaggattt taatagagtg
      421 gctgtcacag aacaacagct aaaggccact gtttgataag ttactgtaaa aatagactgc
      481 ttaaaatgag aatttcctcc taaattcagt catcacaaaa agctggtggg taggaaaaca
      541 ttgaagggag acaatttcta cgaggactgc aaaaaagact tttcaagttc agtgacattc
      601 taacctgcaa tgactttgta agaaactaca tttcccatct gtcttcagtt ttagtgagaa
      661 atgacaaaaa taaaaggagg agaagtcag
//
LOCUS       KCOD01000980             683 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 109357pyr ultra-conserved element
            locus uce-1766, sequence.
ACCESSION   KCOD01000980
VERSION     KCOD01000980.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 683)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 683)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="109357pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>683
                     /note="ultra-conserved element locus uce-1766"
BASE COUNT          222 a          154 c          154 g          153 t
ORIGIN      
        1 caggaggttc tggcatgcag cgcttgctca gccctcagct catatcagca taaacacttc
       61 atcacagctg acacgctgat atgctaaatg agtaagtgcg gtgcacaaag aggtcacagg
      121 gaagttaact aaagggatta taagggacag tcaacacact tcaaaaagaa aaaacctgat
      181 aggtgcagaa aacatggtaa atgagcccga agaatgcaaa ccctccgccg tgcactccat
      241 tacagccctg acagtccagt tccaaacagt taaatatgaa actgtcaaca agggcctgtc
      301 ttaataacca aacttgaggc cttttatcct ggaagattta tgaagtaatt ttaaagaggc
      361 ccaagcaaac atctgtcaat aaattgaatg ccggctacag gatttacaag caagacaaga
      421 atttctcatt aagtgcacat tagcactgtg gggatcataa atagtaagag ggcaggatgc
      481 tgagcctctc aagctgtcat taaaacacta tctaagaact aatgaggaag tgatggaagg
      541 atactaatga tccctcgggc tcctttcatt cagcggtgcc tgtgatacat ttgccacaac
      601 gagggtttca gagcctccca aactctgtcc ctgcaaagcc acagggacgc tgagtgctca
      661 ctggggtaca agcagtggca ttg
//
LOCUS       KCOD01000981             623 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 109465pyr ultra-conserved element
            locus uce-6626, sequence.
ACCESSION   KCOD01000981
VERSION     KCOD01000981.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 623)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 623)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="109465pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>623
                     /note="ultra-conserved element locus uce-6626"
BASE COUNT          201 a          111 c          121 g          190 t
ORIGIN      
        1 ttagacattc tctattaatt agaatgcaat cataataaaa aggaatactg catctttaat
       61 gatgtttttg tgcctgtgta gttaagcttt aatgctaggt agattaaatt agccttgtaa
      121 cctctttctc ttccagactg atgatggaaa ataaaagctc ttagccacag aatgtaacac
      181 ttagaattaa tatttaatta gaccagcaaa ctgtacaccg tggctgaaag cttccaaaga
      241 gttgttagtg ccacaattga cctacaagtt taataataac tcacttctag gagcaagtgc
      301 cagttcagca tagtggagcc actgtaagaa agtcctgtga gattaaaatc agcaaaccaa
      361 atggcaggcg aggattcctg ggatggagcc ttctggaaag ctgggagctg gagtagcttt
      421 tcagccagga ttcagatgag aacagtgggc aaaaaaagct gatccctcct gttctgggag
      481 cttctggttg taggccaaaa tcttagaaca gattttttct aaatgttctt actgcagcta
      541 ttaatttata tcacaaatca agtaatgaat ggcttatctt catcttttaa ttaagtttca
      601 gtacaaacat tatcactgaa ttc
//
LOCUS       KCOD01000982             813 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 109577pyr ultra-conserved element
            locus uce-5451, sequence.
ACCESSION   KCOD01000982
VERSION     KCOD01000982.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 813)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 813)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..813
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="109577pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>813
                     /note="ultra-conserved element locus uce-5451"
BASE COUNT          246 a          166 c          164 g          237 t
ORIGIN      
        1 tactctctga gggcttatct gtacagagcg gttgctgaga aataatgaat ttacaacacc
       61 tcagctccac aggtgggcac tcttaacatg cagtggaaga aggtgctgca tgtgaaaagt
      121 agagagaaaa tattccctgt gaggattttg aggctgagtg cagtttcctt tgctctacgg
      181 gaggcttcag ccacactgta aaaaataaca acccacaaaa tctgtctggg agggtgtcac
      241 tggttgtcac catggcacgg atggcctcac caactgcagt gacggagcca cccatggtaa
      301 atgccggaca actcttctga cctgttaata gttggcagac tatttgatga cagttgcaag
      361 aatctgatgc acagcagtat cctttacagc agtttaatct ttgtcatcaa atcccccagc
      421 agccatgatt aatagcagca cttgagcttg ttttgaaagt tgtatatttg gcagctatga
      481 actttgatct atggtttcgc tttaaagaat cattatgaca caaacttttc ctgtaatcct
      541 tccatctaat taaaccacac acaaatacta tgtggggaaa tatgatgcta ttgatataag
      601 ctgtctgttt attacattat tttaggcact ttattaaaat ggatagttgt tcccagcaag
      661 atagtagata agctccccaa aaacaataac atcacccaga aagaatatat aagagaattt
      721 cccaaggcca aattcgatta gaaactttct ttgttgatta gtactgtgcc cttgaaccct
      781 ttaagggctc agatgtttta acctggctaa aat
//
LOCUS       KCOD01000983             443 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 109685pyr ultra-conserved element
            locus uce-3084, sequence.
ACCESSION   KCOD01000983
VERSION     KCOD01000983.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 443)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 443)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..443
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="109685pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>443
                     /note="ultra-conserved element locus uce-3084"
BASE COUNT          136 a           77 c          110 g          120 t
ORIGIN      
        1 tttcttgagt caaaggaggt gtaattggta gaaagcacag gagctctgtc agtaggtgat
       61 gggaagcgat ggcaggctcc aggaccggcg ccggagcaga tgttctctac ctgcctcgtt
      121 actaatttca acaagtgttc gccttctagc tgctgccagc aatggcatgg tttgttacca
      181 tgagcaattt tcttaattaa cagacattaa ttagccattt agcaattttg caagcatttg
      241 tttagcagct ttcctaaaca tgaataccac tgtgataatg gtactgatta gagggtcccc
      301 taattaacag tacagggaag gaaaattgaa atcacataaa ttaaaaaggg aggggaagtt
      361 aatgaaggca ggacatattt gcacctgcaa atcttttgta cagcggaaac ttgagtgcaa
      421 tgtaaataaa gtaagagggt ggg
//
LOCUS       KCOD01000984             646 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 109790pyr ultra-conserved element
            locus uce-7690, sequence.
ACCESSION   KCOD01000984
VERSION     KCOD01000984.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 646)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 646)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..646
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="109790pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>646
                     /note="ultra-conserved element locus uce-7690"
BASE COUNT          216 a          118 c          108 g          204 t
ORIGIN      
        1 acatctcaac ccatttaaaa agcgcagcag tttttaggag gaatgcttgg gaataactac
       61 aaatagtaag tttccctagt tctttttgtt agttaacaca gcagaaacta ccatttcaaa
      121 tgtgatagcc atatctgtat ttcacttata aactcaacta cgttacagct atattcatat
      181 ctctccagaa taaattatgg gaaataacca tttgtcttca ttgtagacac ttttgcatgt
      241 atagtagaaa acaaacctct attcaataac tgcacagagg caccattaaa atcaaattta
      301 cagtaaacag aacctgcagc tggggtaaaa cactaactgt tagtatttta attatctgcg
      361 aagctttcgg aggtctaaca tctgctcata gccaaatgac agcagctgct tgtgtacact
      421 taaaacaaca tgaatttctt ctataaatat taaaatgaat tgtatgtcgc atgttcattg
      481 cgactctatt cctatttgtt taagtatata gggtattttg aacttctttc ttgtggtaaa
      541 ttcataaagg gctgacctcc tcaaaagaat gagaggcaaa ggcagcagaa attcttgagt
      601 ctgtaaattg aaaatgttta gagacagtac tggaggtcac cctctg
//
LOCUS       KCOD01000985             688 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 109901pyr ultra-conserved element
            locus uce-2612, sequence.
ACCESSION   KCOD01000985
VERSION     KCOD01000985.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 688)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="109901pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>688
                     /note="ultra-conserved element locus uce-2612"
BASE COUNT          200 a          141 c          161 g          186 t
ORIGIN      
        1 taaggtatgt tggcttttaa ataaactgtc aagtaaacct tggcattgaa aacaccaagt
       61 gagtaactgc ctctgtagaa gagctgacag ctcggctgtg tgtcagatag atagctgccc
      121 aagactgagc tgggaaggct cacgcatcct gcttggaagg gttgcttgct cctggattta
      181 cggctgcaca atgctttggg gtgatctgaa tgctggttaa ctagctactg gcagttcacg
      241 ctctgcaagt gctggttctg gaattagaaa gtttggaggt gcaaaaacat aattggaaaa
      301 ctccctgttt aaaaggctaa ttgatttcac aggtgtttaa ttatcatttg ctgtgagata
      361 ataccttgta gtgccataaa aaatggattt aattttcgag tgcttgcaaa accattgcca
      421 aagccaagtt agagcgaaag ctagataatt attctataaa tcaaacacac tgcctccttt
      481 aatacttgcc tataatgata tctgacgacc ttgaaactaa cataaaaagg attgccaagc
      541 gctgaaaagt ggagtatttc tttcagtcta gctcgttacc gcagccgctg ccaccacgcc
      601 gccctggctg ctggactcca agggatgcta cacagcagca gcaggtgtga acagtgattt
      661 caggatacag gtaaatgagc atgagccc
//
LOCUS       KCOD01000986             601 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 110011pyr ultra-conserved element
            locus uce-1072, sequence.
ACCESSION   KCOD01000986
VERSION     KCOD01000986.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 601)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="110011pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>601
                     /note="ultra-conserved element locus uce-1072"
BASE COUNT          217 a          138 c           91 g          155 t
ORIGIN      
        1 aacttcccag acaaaacgca acccaagcca attaagacac aagtatttaa agacatgagt
       61 agtaattaca aatgcattat tcatacctaa tttacaagat gaacttcttt cagtaaaata
      121 ttaaactgtt tacatgcatt caggaagaca atttcccaac cctgcgcgtc ctgctctgga
      181 acagtgacta ttgctatgca acaactccac agacttacag tgtacactat ggagtaatca
      241 gaaaatgttt gacctcagat atctacttga ccccacagaa atgcagactc gctcactata
      301 aaatcctaaa caatgggcag acaaggtcag agggtcaaag caagtattaa caggtcattg
      361 tgcaacccac ttgggagcaa ttacttctgg tcacggctaa gtggacactt gattgaatac
      421 cactaagaca gctcacatcc cacagataac aatcctcaca gcgattaaga attaaagccc
      481 ccatgattca gcctttatta ctcaaatgaa cctaactatt ccataaaaaa ctcttggtat
      541 atgcatgatg caaggtctaa attgaaatgc cacctcatta aacaataata tctaatttta
      601 t
//
LOCUS       KCOD01000987             750 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 110122pyr ultra-conserved element
            locus uce-4885, sequence.
ACCESSION   KCOD01000987
VERSION     KCOD01000987.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 750)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 750)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..750
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="110122pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>750
                     /note="ultra-conserved element locus uce-4885"
BASE COUNT          219 a          143 c          151 g          237 t
ORIGIN      
        1 atagcttggc taaggtagac agagcaaaat acagagaata gttgctccag ggctttgaaa
       61 cccctcaagg caaggatcag gatacaatta gctcatgtct ctacctccag tctgaatcaa
      121 tctccgaaat aaaagttaaa ttaaattaac tgatcacacg ggcataaaat tgatctcctt
      181 cgaaacgtgc atatagaaag tatatatatc gcgttttttt tggtggaaaa aacagtctca
      241 ttccagccta caacttgctt tttactctcc tcttgcacag aaaagctgat tttaatcgtt
      301 gtgattagtt ttgatgtaac gtttccgcgg gcgatttctg caaatggatg gagtgtttct
      361 ttgccagaag agggaaaagc agcagatgat gataattata aggattgttg gttgtttctt
      421 tcttttcttt ttatttgtgt ttagatctgt ctcttcactt tcccgagttg acctgacatt
      481 gccgttgcac taaggtcgca caacttgttg attaggatca cctcccgttt tgatcgaggg
      541 atatgggata atttggcagt ggagcaacac attttctgtt cccttggcta tataacttcc
      601 caaatgacgt gtataaaaat aagcacatgg agtctgcttt gccccaatca agtctgaatc
      661 aatgcctgag ggtgatacac aaactcattt caaatgttca accatgcaga attgcaaaaa
      721 gattgaagga gttgcactgc atttttaaaa
//
LOCUS       KCOD01000988             643 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 110234pyr ultra-conserved element
            locus uce-7460, sequence.
ACCESSION   KCOD01000988
VERSION     KCOD01000988.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 643)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 643)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="110234pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>643
                     /note="ultra-conserved element locus uce-7460"
BASE COUNT          192 a          130 c          124 g          197 t
ORIGIN      
        1 agttatgaga gagcaaatac tacccatcac ccataccaac tccagcttcc tactctcccc
       61 catcacaagc tttttgtact acatgaaagc tagtttcaaa atttcatgtt catagttaca
      121 gattaaataa tattaaacag cattacactg gaaagatttg tttccaagta gcaaacaaat
      181 tccccatatt attctttact gtaagtagtt gttgttatat cttattcatc tggaaaataa
      241 tttcaaacag ccatgaaaat agctgatttc tctctgttaa aatgatagtc agagcctggg
      301 ccgctgacat atagtaacat gattcacttg gacagttact gactgcacat ccaattcatt
      361 tcttctctag agcaccaagt tattatctga aatgcacaag gtgtctgggg gtaacatatg
      421 atcagccagg gacgcttttg acggcttgaa gagcaatcaa taaaaattgt ctccagcagt
      481 tttgtagagt atggaagttg gtggtgaaat gaagtgatgg agattaactg gtggaagtca
      541 atgccccggt gctgtgaacc ctgtttttta attaaagatc caaagctgct tttcactcga
      601 atggggtgtt gtgccacatc ctgtgctgag ggagccttcc ctc
//
LOCUS       KCOD01000989             462 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 110344pyr ultra-conserved element
            locus uce-2992, sequence.
ACCESSION   KCOD01000989
VERSION     KCOD01000989.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 462)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 462)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..462
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="110344pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>462
                     /note="ultra-conserved element locus uce-2992"
BASE COUNT          153 a           77 c           90 g          142 t
ORIGIN      
        1 tttttatact aagtaacagt tatctttgca gctccgtaat atgagtttac agaaatcttt
       61 gggttgcttt atcttactgt aacatcaaac tggctggtga aatgatactg gcagtataag
      121 tcattacagg tctgacgtta cagttgttac acattgctga atctgtcaaa tgaaaaggga
      181 gcacaaaggg aatttccaaa tgcagctgct atttcccatt tgttaaatcc ttttattaca
      241 ccatataagt acacagctgg gaaatactat agagtgggag ttaaaacaaa atattttggc
      301 ttccagacat tcagaataca caaaggactc agtggaaagc aatgcctgat atcaaaaggg
      361 agtgaaagtt tgaaaacatt tctagccagt gtttttctga taatgcacaa cgtagtttaa
      421 aggtacctta cattacggaa agtgctgcgt accataaatg tt
//
LOCUS       KCOD01000990             613 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 110453pyr ultra-conserved element
            locus uce-6157, sequence.
ACCESSION   KCOD01000990
VERSION     KCOD01000990.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 613)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 613)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..613
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="110453pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>613
                     /note="ultra-conserved element locus uce-6157"
BASE COUNT          175 a          136 c          107 g          195 t
ORIGIN      
        1 ctgccccaca ggacgtaaat tgtcctaaac ttctcctggc ttatgccatt ataacctcaa
       61 tgctgtcagc ccagaatgct gtcggagtgg gaaggctgcc ccttgaacaa ttccagttta
      121 taacaagtgg ttcatatcaa cgcagctcag atctcaacca gctcacggaa gggttaaaaa
      181 tagaaagtgc tatccactgg tttgctctga tgttcctgta gatattgtca ctggatgtat
      241 cctcagaaga attctattca acacctctgt ctttaagtac aaagctgtag gctgtagcag
      301 ctttaggaaa cataagtatc cttttttctg ctgcacagta tctgtgtgtg aaattctcta
      361 aaggggttta agtatttacc ctgaacacta tcagacagtt tctaaaattt tccttatcct
      421 gttgcagaaa cacttcaaag agaatcataa acacagtctt ttgtgctttc agcacacatg
      481 ttgttttgga agcttaagtc tgaattccct cagaattgta aatacctcaa agatgtgcaa
      541 tacaacttta cttttttaca gattcattgt gattctacta cagacaacgc taaatctttc
      601 tcccatttct gac
//
LOCUS       KCOD01000991             557 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 110563pyr ultra-conserved element
            locus uce-6509, sequence.
ACCESSION   KCOD01000991
VERSION     KCOD01000991.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 557)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 557)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..557
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="110563pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>557
                     /note="ultra-conserved element locus uce-6509"
BASE COUNT          174 a          101 c          111 g          171 t
ORIGIN      
        1 aatgttctta aacacagtta aattaacact acttgcagtc catgtcacat ggtctccgta
       61 acatcaaatc acttaagctg tatgaattgg ttaacatatt ttatgactga gccatattaa
      121 gactattaaa accagcccaa catgttagat ttaataggtt tttttgttac tgtgtgaata
      181 tgaatattct gatgaaactg gtgtagctgt tgctttctgt tgctctctgt tactcagtgt
      241 tttcagagct tgggaacaga tggtgcacca cctgactctg cacactctaa tgtaagattc
      301 attgtgcttc acaggaaatc aaagatcaag caacattgca gaaggtgaag cagcacctca
      361 gcaaccagca acacagtatg atacagtcaa gtggtggagc aagaaagcag aaagagagaa
      421 gggagagaga catatttttg aggtttattt ttctttctcc ttttattttc tcaatctcga
      481 gtctggaaaa ggatcatggg attcaacatg agaaacttta gtgcttatgt tgtcaaaagt
      541 tcagacctgc caagcaa
//
LOCUS       KCOD01000992             329 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 110665pyr ultra-conserved element
            locus uce-6522, sequence.
ACCESSION   KCOD01000992
VERSION     KCOD01000992.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 329)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 329)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..329
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="110665pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>329
                     /note="ultra-conserved element locus uce-6522"
BASE COUNT          107 a           62 c           45 g          115 t
ORIGIN      
        1 tttataaaag catgctgtct ttcaattaac atagtaatga cctattgtca cctgttacca
       61 tgctaatcct gagctggtgt gaaattactt tataataaac actatgcagt tctgactttc
      121 aattaatttt tcccatgctg tgctaaatca gattaactgt accccaccct tttgaccaca
      181 gacataattc cttccatata atgaaataga ggattaattt atatgaagca tatctatacg
      241 catttgcaaa taaatgtaaa gatagacttt gtaccataat tgcactgctc acagtgtcag
      301 gttgaataca gacttaattt ttatgttca
//
LOCUS       KCOD01000993             816 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 110772pyr ultra-conserved element
            locus uce-5822, sequence.
ACCESSION   KCOD01000993
VERSION     KCOD01000993.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 816)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 816)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..816
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="110772pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>816
                     /note="ultra-conserved element locus uce-5822"
BASE COUNT          266 a          165 c          148 g          237 t
ORIGIN      
        1 atgattaagc gtaaatctgt cctttaaata tgcatagcag taatagctta aatgcagttc
       61 aaatcatggc cagtcttgct gcatgtacaa atctgcacca ggccgtgcta aattaaaaag
      121 cacctcaaaa gataaagaaa aaattggttg taaactcctc tgcattgcaa agatctcttt
      181 tgtctgtcaa tcaacagaaa agtattattc caccatcaca aaaggcaaac ctttggagtc
      241 agtataggtc tgtgtgttgt gcaaatgtgc agttgctaag aagcaaatat gcttctcctc
      301 taatcaaata gcccagctca gcaatgctgc tggcttgggg caagaagcaa attccaccag
      361 ccacaaactt agaaacagtc ttgaattatt tgttgctgac cgctggctga accctgtcct
      421 gatgagcacc atcaccatta gccacttctc agtgtattcc atcaaccaat ggcaatagca
      481 gcatgctaca gctcaggctg caaggaattg atcaaacagg gtaatgagac tatttcttca
      541 tggaggttat tttaaatgaa tataaatatt ttctttctac ataatttgcc acaaaaggtc
      601 actgaactcc ctgcgattct aaagaaaaat gctgtggtat cccctttata tatttgagtt
      661 aggatatagc caacaaacaa ttctgggcat ttttgatgat cgtgtaaatc ttaatgaggt
      721 ggcatcccag acaattgatt agcagcaacg ttctatcttc acatttagtt acgaacaaaa
      781 agaagatttg atgctatttt cgaaaatcat gatata
//
LOCUS       KCOD01000994             501 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 110883pyr ultra-conserved element
            locus uce-5123, sequence.
ACCESSION   KCOD01000994
VERSION     KCOD01000994.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 501)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 501)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..501
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="110883pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>501
                     /note="ultra-conserved element locus uce-5123"
BASE COUNT          133 a           94 c          108 g          166 t
ORIGIN      
        1 ttttaacctg agcaaaattt actgaacacg tgttaattgt ttagaatggt tagcaggcat
       61 gaaaacctcc tcagttccta aaatgagcat gagtcatgtc cttcttgaac aagtagctgt
      121 gcattaaata tgctggcaca tcttctgctt gagcaagtgg accgaaatgg tgtgaattgt
      181 taatgccttg ctgctttggt tcacggcttg tgattgatca tttgtaacta tatctactcc
      241 ttgttccatg aaatcaagta tggagtaatg ggttcatcag atttttgggt taaattgaga
      301 gtgaagaggt actgtgtgtg gaaataagag ttgccatgtt cggggctggc cttgtaacag
      361 catggaatct aaaggcgata ttcaaaacca cttcactcat catacgctta ctgattctga
      421 atagggtcca tttgcagggg acatttggta gttttccaat acactttatg cctctttctt
      481 cacttctacc atcctgcaca t
//
LOCUS       KCOD01000995             657 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 110992pyr ultra-conserved element
            locus uce-7479, sequence.
ACCESSION   KCOD01000995
VERSION     KCOD01000995.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 657)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 657)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..657
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="110992pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>657
                     /note="ultra-conserved element locus uce-7479"
BASE COUNT          222 a          119 c          128 g          188 t
ORIGIN      
        1 agcgctggcc agtcagaaca aactggagct gtgttttacc attaatattt cattgaacca
       61 gaagcaacag attaaacacc tttgtataca ctggaaagca aaaaaataat atggaaatta
      121 aaagaaattt ggtaaaaagg ttgcacactt ctaaattctg agtgcaatgc agtgcaatta
      181 tgctggaaaa gccactgctg ctgctgtgca gctgttggag gagagggtta cagtgacaaa
      241 cagcttccct gctacaaagg tggcaggaaa tctatcaaac tggacaataa aattgcaatt
      301 gagtttcttt ggctttttat agcagctgca tgtatcttga tgtgtagctc tgcaaaacct
      361 atccaattct gtaacactgg tcctttatgt actagttctt tatcatagaa tggtgttata
      421 aattagtggc accaacgcag agggttgtaa aaataagcag taacccaata caattagaga
      481 tgaaatagga aaaactcaaa ttggttattc tcttagcaat gttaaggaaa tatttttgtt
      541 cccataattc ccacattact ttgaaagcat gctagaaatc aaaaacatct gagatgcgct
      601 tagcatcgaa caatttgccc actgaattat gcctacacca ggttacgtgt gaatctc
//
LOCUS       KCOD01000996             498 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 111104pyr ultra-conserved element
            locus uce-2646, sequence.
ACCESSION   KCOD01000996
VERSION     KCOD01000996.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 498)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 498)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..498
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="111104pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>498
                     /note="ultra-conserved element locus uce-2646"
BASE COUNT          160 a          101 c          112 g          125 t
ORIGIN      
        1 agcaaaatag cagggtggca cccaccctgg ctgtagcaac acaaatgagg cctcactgaa
       61 ctggagtgca caaagcacaa ctgtatattc cgtacacgag acggttaaaa atttgaacat
      121 aaggcagcat ttcctttatc atatcccata aaaatagcaa tttgctaaag cccttgtagc
      181 acagtatgga aggtggtgta ttttactgat aatgtagaga tgacagatag tcctatacta
      241 ggaggtttca gtggtgtctt gctgtatagc ataataaatt gtgaggagca gagacagagg
      301 acagtgcagg caggcactgc tccacctcca gtagccaaat aattcagccc cggctcagta
      361 attatgctgt gtgaaaatat gggattaatt agactggtac actaacacac tgtagtctca
      421 ttaaaggctg aacagcattt tcatagatac tgccacttga acagggctgc tgctaatgtg
      481 aaaagacaaa gtctcttc
//
LOCUS       KCOD01000997             687 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 111210pyr ultra-conserved element
            locus uce-2003, sequence.
ACCESSION   KCOD01000997
VERSION     KCOD01000997.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 687)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 687)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..687
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="111210pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>687
                     /note="ultra-conserved element locus uce-2003"
BASE COUNT          233 a          114 c          116 g          224 t
ORIGIN      
        1 aaagcaacct tctttcacag cagctttcag ttttgctcag agagctgtat agaatttatt
       61 ttaactccct gcaaagttta ggtctctgat taaacaaagt aggagctgga tgatatcaat
      121 ttaatcagac cattgaagac agccaacaag aataaatagt atgtgaaaaa ccagatttcc
      181 aatgaaatta aatgaaaagt tataaggctg tggttttagg aacggcctct cttttgtggt
      241 ttttggttga gtgtgttttt ataagaacat tattgcttta agaaaaaaat ttaaaccctg
      301 agaaattact ctcagtctaa cgagttcttt tccactgact acagacatca ttaggggatg
      361 gctatagcct gaggctgtgc atgaactttt tcttctaact gtacacttta tgtataattt
      421 agctttcttg cctaaattat tcaagcaaat agtgagcgaa aataatggag ttcactgaaa
      481 ccttccacag tattaaaata aaacacgttt atttgaattt ttaagctttt taatcacgga
      541 tttcaaatgg aatacgcatg tcttcagctc ttctctgctt gtccccccag aagaaaggaa
      601 acgaacttca gcaaataccc cattaattaa taaatgttac ttatgactac ttgaagtaga
      661 agtaatagta attaatagat atagaaa
//
LOCUS       KCOD01000998             276 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 111319pyr ultra-conserved element
            locus uce-5052, sequence.
ACCESSION   KCOD01000998
VERSION     KCOD01000998.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 276)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 276)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..276
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="111319pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>276
                     /note="ultra-conserved element locus uce-5052"
BASE COUNT           98 a           44 c           43 g           91 t
ORIGIN      
        1 tttacctgac actgccttct ttctgcaaca gaggagtggt ttattgcatg ttaaaagaca
       61 agatatgtat tgaaagtagc aattttattt gagttaaaat tatttacaaa aacccaaaga
      121 catacttcat gaaactggta caaactattt ttcctgccgt tggcttttgc tccaaagatc
      181 acagctgaga aatactgtat aaaataaaaa taggattgga ttcagaaaag tactctactg
      241 ttctaatttc caattgagag tatttacaca aatatt
//
LOCUS       KCOD01000999             409 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 111428pyr ultra-conserved element
            locus uce-4473, sequence.
ACCESSION   KCOD01000999
VERSION     KCOD01000999.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 409)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 409)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..409
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="111428pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>409
                     /note="ultra-conserved element locus uce-4473"
BASE COUNT          131 a           61 c           55 g          162 t
ORIGIN      
        1 tatgtttttc aataaacttt ttcacagaga aaattctctt cactttaaaa attataatta
       61 tatgtcttcc tcccactttg aaaatggcac aaggtgctca tttgcagagc tctactgttc
      121 aaatcttcac tgagaataga aatgtcatga ctcagttaac aatgctttat tattcacatt
      181 gatctttttt tatagtgttc tttatctcaa aaacattgta aatcagatat cttcctccca
      241 ctcttttgtt catttgcaaa tttttattat tctagtttaa aaaagcaatg gagtgtcaag
      301 agtcagtgta tattgtttat gttctttttt gctttaaaat tacttttaac tataaaaagt
      361 aagatgtata gcaggagctg gatttaagga tgcttaaaaa agaattgat
//
LOCUS       KCOD01001000             589 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 111536pyr ultra-conserved element
            locus uce-4549, sequence.
ACCESSION   KCOD01001000
VERSION     KCOD01001000.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 589)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 589)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..589
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="111536pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>589
                     /note="ultra-conserved element locus uce-4549"
BASE COUNT          180 a          113 c          121 g          175 t
ORIGIN      
        1 aaaatacaag caaacaaccg acacattagt taagagacct tccattttac tttggcagtt
       61 cacgataatg gaatttaatt gtggaaaaag ctgaataatt ttagctgaat gtcatttggt
      121 tcattcaaac tgggaatcag ggacattttt aacaaaggtt ttcaaacttc ttttgaaatc
      181 aggaagctgc tgtgcacaga taaggggaga ggtttgagga ttctctatca gaaatttcaa
      241 ggttttttcc atctgctttt tcacattaac tggtaattat ccagaaaggc acataatagt
      301 gcagaaatga cagaagctga caaaggtttt cctaagatat gtaaattgtc agtgataggc
      361 aaggtgcaac agaaaggctt tctacagcac aattatttat gccagtttca tttgctttta
      421 ggtagcactg atggttctac tccgccgctg cctttatcac aggcactgca cattccctca
      481 ccaccagcac acagggaagg tggcaaaaac tgagcttgga gcttggtggt ctcctccaat
      541 gtaaatacat gcacatgtgt gtggagatat gcttgttata accttcccc
//
LOCUS       KCOD01001001             625 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 111646pyr ultra-conserved element
            locus uce-278, sequence.
ACCESSION   KCOD01001001
VERSION     KCOD01001001.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 625)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="111646pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>625
                     /note="ultra-conserved element locus uce-278"
BASE COUNT          189 a           95 c          116 g          225 t
ORIGIN      
        1 acactgatta tgtaagtgga cttagaaaat aggagaactg ggaatgtcag ggaagtctgt
       61 ctataaatat ggtacataac caaacttttc taaatgaagc actgccgttc tgcaagtgaa
      121 ataaagcagt tgctgttgaa tgcatactga gagacaagtc ttataatgtt cttcatttgt
      181 tgaggtttct ttgcattaat taaaaaaaaa caaagtattt taatgtgacc ttcatttggc
      241 atttgtttta acttttcttc tattttattt aattcttcca cttctgttgt tcaattagtg
      301 tttgacccct ttagcagaga tttaaattaa atgacatttc aatgccatcc catatttaaa
      361 atactgtgtt agttgtggat cataaaggat gatcttcgtt ctttagctaa tttattcatt
      421 taacaatttc cctccagaag ttccagcaga aggctctgaa gcaaactaag cagaagaaat
      481 ccaagtcggc tgaatttctg atgggtgagc cttgcttgat gagttattgc tcataatttg
      541 tgtaaggatt aattaactaa ttacagacaa atggctgtgg gcgaaatttt gctcttgctt
      601 gtcagggtgc aatttgtaat tattt
//
LOCUS       KCOD01001002             850 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 111760pyr ultra-conserved element
            locus uce-2503, sequence.
ACCESSION   KCOD01001002
VERSION     KCOD01001002.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 850)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 850)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..850
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="111760pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>850
                     /note="ultra-conserved element locus uce-2503"
BASE COUNT          246 a          151 c          160 g          293 t
ORIGIN      
        1 aacagtgtat ttgttttaag tgctttcttt tgtcatctcc atttcagtgg ttttgcagag
       61 atttatcgtg agtagaatga aaaagtggtg caaggttcag ttatagtaag agcaacttgt
      121 ttgtatgcat ttcacatgct gttggtctgt aggtattatt aatatctatt tttagaatca
      181 agattgtgat gcacagagta cgtaggcaca atgtgataaa aacacagcaa tactgtttcc
      241 tttccatttc attataaagt ttctttgacc ctgtggttta ttttcaaaca tacaagttat
      301 ttgttctggt gtattcttaa acaggggttg tttttctccc tttcagaaaa tgagcacaga
      361 tggtgattga tttttcaagt gctgacatcc ctgcttgaga aaatgttccc accttctttg
      421 tgctgagcaa gtcaggcaaa ctaacatgat gatgcgatca tcagtttcat gcagacatgc
      481 agaattgatt gacagggaaa attttaacat aaaccacaca ttcttccagt gtcttcaatt
      541 ttttaatgat gtttatttgc aggatattag cagcagcagg gatttcattt aaaaacttat
      601 ttcagcaaca aggttaaatt gagaatttcg ttgccttagc ccagcacaca tcagtacaat
      661 ttgtaatagc tcttctgagc cagttctgaa gctaaatgct gtcactggct aactagccat
      721 tctcaggcca ttgcttctgt ttgcgtgact aaatacatac aattaaagcc tagcactttc
      781 attctctatg aactcattgt tatccagggt tcaagtactc agataatggg ccagaagaaa
      841 acaggcatat
//
LOCUS       KCOD01001003             488 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 111871pyr ultra-conserved element
            locus uce-7499, sequence.
ACCESSION   KCOD01001003
VERSION     KCOD01001003.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 488)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 488)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..488
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="111871pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>488
                     /note="ultra-conserved element locus uce-7499"
BASE COUNT          155 a          101 c           90 g          142 t
ORIGIN      
        1 gagctggcat tccccacatg ttttagacaa ataatgcact cccgatcgaa agcaatggaa
       61 gctcctgcct tgtgggtatt atatttttta atctaccaat aagtttggtt tcattttaca
      121 ggaagtaatt ccaaactgta agccacgact gacctaacta cttattaaaa atgctaatat
      181 gcttttgtgc tttgatgtct ggtgaacaat aaaagggaga gttactctgg gacactgtaa
      241 tcctttattt gtcactaagt tatgacaccc agcagagctg tgtgacagtc caaatcaatc
      301 atcccccgtg cactgcaggc cttctctgcc tcctgcagag tctatgcagt ttaattagct
      361 ttttttcaca ctagcataat gtacatctgc agcttcagca agaaaaagaa atggaggata
      421 gttcactggg atacggtgcc ttaaaaaaaa aaaaaaaaag tctgaaagaa gaaacatcac
      481 aatccttt
//
LOCUS       KCOD01001004             383 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 111973pyr ultra-conserved element
            locus uce-3265, sequence.
ACCESSION   KCOD01001004
VERSION     KCOD01001004.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 383)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 383)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..383
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="111973pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>383
                     /note="ultra-conserved element locus uce-3265"
BASE COUNT          123 a           66 c           63 g          131 t
ORIGIN      
        1 taattaatcc tttggaattc caggcatttt tcatttagtt cttagcagag gaaaaaaagg
       61 tgcctgaaca actatttgtg tcgtagagtt cataaatgag cccatcaccc tataccagaa
      121 ctgctataat tttatcggaa tgaaaaccat tctctttgat ctcctccagt tcttaaatcc
      181 agcagttgtg tattcaaaca tcaatggaaa tgtggtttca agcttcctct ttcattatct
      241 ttctcaaaga taaaaaagag caaaagaaaa gaagttctga gctttagaga tgaggcaata
      301 tttttacagt aatttcttta tctgatttca tcctgtttac agaagctgct gtttggaaga
      361 aagatggctt ttctttaaat aaa
//
LOCUS       KCOD01001005             756 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 112083pyr ultra-conserved element
            locus uce-1703, sequence.
ACCESSION   KCOD01001005
VERSION     KCOD01001005.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 756)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 756)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..756
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="112083pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>756
                     /note="ultra-conserved element locus uce-1703"
BASE COUNT          234 a          148 c          137 g          237 t
ORIGIN      
        1 ccaaggatta ttttggaaga aacattaaca gccgtcccag cctggcgctt atatctcatt
       61 tgaaacatct actcattcct gaccaacaaa gaaaatttca ataaagtact tttactggtt
      121 taacagcagt gagctcctgg gattgtcaaa gtgctcagtc ttttccgagg agagaaggaa
      181 tcagcagctc aaatataatt aaccttccat tctcaatgca aactgccacg cacaggagct
      241 ctgcagtcta ttagtgaagt tataacggcc aacaggcaga ggcaaaattg gtcaaaaagt
      301 tggctgctgc tgtcatattt ttagaattat gattaatgac actaataatg tggatgatta
      361 ctgatatgtg tatctcctgc agtttatcat attgcactgg ctgcctacgt ccacaataaa
      421 catgatgcta tcatttacct ctttattgaa ggcaatcctt ctcttgaagg agcacattct
      481 aattactttg taatgtttta tgtcttaaac attttgtagc tctggacctt gccaactgct
      541 tcatgtctac cattgattaa ttacagaatg tttaatcaaa atttagaacc taatgcagtc
      601 atttatgaat gtgctgcaat agttaggctg ctgtcccaag cttggagagt gctgggttca
      661 aaattaaatc ccagaaatct gaaagatgcc aaagatttta cctcaagtga tttgagttta
      721 aaaatcttac ttcatttgat gaatgacagg caccaa
//
LOCUS       KCOD01001006             768 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 112193pyr ultra-conserved element
            locus uce-1458, sequence.
ACCESSION   KCOD01001006
VERSION     KCOD01001006.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 768)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 768)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..768
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="112193pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>768
                     /note="ultra-conserved element locus uce-1458"
BASE COUNT          245 a          155 c          152 g          216 t
ORIGIN      
        1 tttgtcatcc agctgattaa gaggcaagga aatgaagtta ctcggctgca gtagtatctg
       61 acttttgtaa aacagtggaa gatactaaag tgacatagac aattttgttt taataaagca
      121 tctataaatg aggtacacac attcaggtaa tcaatgtgag aataactgac aaaaaattca
      181 gatgaattgt catttccatc gattgttagg agggtgatgg tccttaatct cgcatcaatc
      241 tcaatgtgtg ccactaggac aaaagaagag atgctctgct gagatcagag cagctttgcc
      301 ctctattccc aacgtacaaa tacattgtgt ctgcagatgg gcatgagata gctgcggaac
      361 tgccatgatt tcccaaagct cacccccaca aatggatgaa ataagcagct atgtgttctt
      421 ttgctgtctc cctttgcccc ctgtacatta gcatgtaatc cagaggagaa ataacatttt
      481 ttcaatcact cgcagacatt caattacagg gcaagcagac agctgcagga gctggggcag
      541 tccaggtcct gtagaagacc cctgacaatt tccacttcat ttctaaccca caccacttta
      601 ttagtgagga ttacttctta atcctattgc cattgtcaag attatataat taaactcccc
      661 tttcacctct attacagtat gaacgtatta cttgaaccaa tgaatgaata atagaaggaa
      721 acattgagaa ggctgtaagg aagttcatgg tagaaaggga ttcatata
//
LOCUS       KCOD01001007             278 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 112293pyr ultra-conserved element
            locus uce-5745, sequence.
ACCESSION   KCOD01001007
VERSION     KCOD01001007.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 278)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 278)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..278
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="112293pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>278
                     /note="ultra-conserved element locus uce-5745"
BASE COUNT           73 a           58 c           70 g           77 t
ORIGIN      
        1 atgtgtttat ttaaggtctt gtaggccgac tgatgagacc atctttgcct tgtctttgcc
       61 agcagggtac ttattgtctc ctctagaccc atagtcatta gaaccggaat cgctccgctt
      121 gctgtttgcg ctatgcttgg ttggcgtgcc ggggggatgg ctcacctgcc cgttcttctc
      181 gtctgaaaaa agttgtttaa ttacgtcaaa gaagttactc aatgggctgc ctgggtacac
      241 aaaacagagg agacaaaaaa agaaagaaag aaagaaag
//
LOCUS       KCOD01001008             674 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 112400pyr ultra-conserved element
            locus uce-5542, sequence.
ACCESSION   KCOD01001008
VERSION     KCOD01001008.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 674)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="112400pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>674
                     /note="ultra-conserved element locus uce-5542"
BASE COUNT          200 a          148 c          112 g          214 t
ORIGIN      
        1 cttctattgt ccatgactta tcattgtcag gattttttgc atttcctcct tatctatttt
       61 gttggaaatc tgaccatttt caaaggttca tgtagattta ctgttttaga acatttaaga
      121 atataacttt cactggtttt tgctccaatt ctttcctttt ctcttcctct gtctcacttt
      181 ttttttaact cttctaaagc actataaagt aagtatcaaa ggtatcctgg gtaattagcc
      241 attacagtac tgtcacagag gcttctgcag tcaatacaga gataatttgg gcaatggtga
      301 atgacagcat tgtccagact tttgggataa tcaaggacac atccagctgt accagacatc
      361 tgtcagaccc atgaatcatt tcaagtagct ttgcaatatt caggcaactc gagcaaagat
      421 aaacacttca gcagcacgca gccacggaaa aatactgctg ccacaagaaa gcatttagct
      481 gctcagtgct gcaggcctgt ctctcaaagc cacatctttt acacatttat ttacctactg
      541 tagtacaact gaaatagcat cccctacaca tgatattcat tagaattaaa aagagagcaa
      601 ggggactcaa aggctgtaat cctgataaat gcaacatgcc ctcttgcaaa taagggcact
      661 attcatattg gcct
//
LOCUS       KCOD01001009             637 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 112509pyr ultra-conserved element
            locus uce-7414, sequence.
ACCESSION   KCOD01001009
VERSION     KCOD01001009.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 637)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 637)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..637
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="112509pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>637
                     /note="ultra-conserved element locus uce-7414"
BASE COUNT          202 a          120 c          119 g          196 t
ORIGIN      
        1 aaaatataca catataagtt ctgcaacctt ttaaagtcct tctatcccct ctggaggaat
       61 gtggtaaata tccttgacat ctgaaataac tggacattgt aagagtgatg ctaacagagg
      121 gggttaacag cttgtgcgtg taccaaatat tattatgacc ttgtgctgac cacattctat
      181 gaagtgttac atgatcaggg acagggaagt tgcttaatgg aagttatata gtagctagat
      241 gtatccttgt cacacttcat ctaaactgat acattgcaat ggtccacact gctcagacct
      301 ggcaattact gtccaattcc aatctattcc acactgccac tataatgaaa aataattagg
      361 agcctgaaaa tgagttttca catgaaatgg tttcagtact tggacacaat cgcctttggc
      421 agatggcttt gggtttgctt taatataata aagacagtta atcatctcta aagagtgcac
      481 agaatgaata aacttttaac actactttct cttctgaaac tctcatattg atcaaatgaa
      541 tactgcagag ttcacatttc tatgggtgag tgttccacac gttcttatac atcctggaga
      601 agaatcaggg gcaattgcgg catttagaaa ctaatat
//
LOCUS       KCOD01001010             694 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 112619pyr ultra-conserved element
            locus uce-1514, sequence.
ACCESSION   KCOD01001010
VERSION     KCOD01001010.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 694)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 694)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..694
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="112619pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>694
                     /note="ultra-conserved element locus uce-1514"
BASE COUNT          157 a          153 c          162 g          222 t
ORIGIN      
        1 aatataaata agatgataga ctggcttttc ttcctttctt ctgatttaca aaacagctcc
       61 aacgagctgt ctgtggccaa aaagtcgggc ttacgccggg gttagagcgt tgttatgtct
      121 gtttacagtg atttgggaga ctagagggga aaagtttgaa tcaacaaata ttttctactg
      181 gtaactcttt tcagggtggg cctcccttgt ctgttacaag ttatgatgtg tggatgaagg
      241 ctttttccca tgcagtaatg actgtatact gagatttcaa ggggctgttc atgacaatcc
      301 cattttctgt gtaatttcat ggttgtcttc ttgaatgaag atattggctg ctctgaagca
      361 ggaggtcaga tgctcctgct ccctttcagt attgttccgg agtatgtttc ctttcagctg
      421 atgaaaagta attcatcatt tacacccttg aattctgcca gcgttttttt gaacaacttt
      481 tctttccccg tggtaccttg ggcccatgaa agagataaat aggttcaata caacgccggg
      541 ccccggatcc tgggagcagg ttcggccttg gaggccctaa gctgcccctt tctcatgatg
      601 gagtttgtca cctttctacc tcgggaagtc aaatcctgtc gactcagcca tctctcagcc
      661 tctctgaagt ggctttggca cccactgggg catg
//
LOCUS       KCOD01001011             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 112724pyr ultra-conserved element
            locus uce-377, sequence.
ACCESSION   KCOD01001011
VERSION     KCOD01001011.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="112724pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-377"
BASE COUNT          195 a          112 c           91 g          204 t
ORIGIN      
        1 ctttatagtt aacagatagc ctacacattc ttttcagtaa gtgggttcca cactgattaa
       61 ggaatgttcc aaatgcttaa tttatagcgg ctgtatatgt aagggtttta gatgctagga
      121 taaatcacca ctttccttat tttagatccg tatttaatgt atatgataca tttaaataat
      181 tattaaactg gctaatgctt aaacgggagt ccaattccac atctgatatt gctctgcttt
      241 tcaagctgct gtaataaaac cattcttttt atagcatgcc attattagaa accaatttca
      301 gaattattta taacctggaa tggcttatta agcagcaatg cgagaatcat gcaaattacg
      361 cgatcaaatg caatataata agcataatca ttagtctcta gcacggatta attaactttc
      421 aatattttat ttacataaaa actaaatcag tgaaataact tctgcacagt caggcttgcc
      481 ttccaatatt ttatacgaac aaaaataatg tgctgtaatt ccattgaccg tgtcccccac
      541 aatggtcccg tcacctgcca catcttaata ggggacaagc tgagagtatt ttctagtttt
      601 ct
//
LOCUS       KCOD01001012             738 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 112833pyr ultra-conserved element
            locus uce-1858, sequence.
ACCESSION   KCOD01001012
VERSION     KCOD01001012.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 738)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 738)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..738
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="112833pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>738
                     /note="ultra-conserved element locus uce-1858"
BASE COUNT          230 a          132 c          155 g          221 t
ORIGIN      
        1 tgcactagat ctgacaagac tgtatgcgtt actttatttt gatactgaca tttaaacaat
       61 aaaataaagc catttaaaac aaatagtggt gcttcaagtg tctgagctgt caagatatca
      121 aattatataa cttggaaaaa tcagaattca ttgttaatgg tatgcactta acacaaaggg
      181 tcgctggagt actaaccaga tatatattca gctaccatgt tggagctaac aggcggtatt
      241 cctttagata gaattgacta tattcactta aatggacttg actctagtac aatcactgta
      301 ttcaaatgtc aaaaaaaaga gaaagaggat gtcacgtagg gtcacaaatt atgttggatt
      361 ttgacagatt gtagccttgc tttacaagag cagtaacatc tcatttgtca ccgtttgatc
      421 tgtaagtgcg ggaatgagag cggaaggccc tccatctcca ccgcaattta atcgctctga
      481 ggccgacagt ggcagctaaa gccacctgcc catgcactgt actgctgatc tgttttaatt
      541 taatcgtccg tcagctggga tgaaagcata aatcgtctcc ctttgatctg caaacggtgt
      601 ggtttttttg taaagcgtgg tgcagaatca gggagacagt tttcacgttc agtgcaacat
      661 agacaacatg ggcaaaagct tgtacgtgat atttcactgt agtagtaaaa gagaagttgt
      721 tctttttgta aattgata
//
LOCUS       KCOD01001013             565 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 112942pyr ultra-conserved element
            locus uce-7977, sequence.
ACCESSION   KCOD01001013
VERSION     KCOD01001013.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 565)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 565)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..565
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="112942pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>565
                     /note="ultra-conserved element locus uce-7977"
BASE COUNT          212 a          102 c          100 g          151 t
ORIGIN      
        1 caataagtta taataaataa actctgatga ctcacaataa tttcatatga aaggtcagca
       61 ttctaatatg tgacactttt gtgatcccta tataatagtc acagataact tttgatttga
      121 tattatgtac caacattaga tgagcagcag atttgtgctt aaaatccctt tccattgtac
      181 ataggtgata acaataagaa tccaaaactg atactatcta ttactctact gaaagcatta
      241 ctatattggc aaagaagctg cagacacaat gcagtggaaa aatgcatatg ccattatgaa
      301 caatgaaagc cctaaaagga ggctagggca aaagtacaat atatatggca gaaggtgaac
      361 aacaagcacc ttgcttcagc tctcaaaaag gcaattctga gcatggcagc tacaactaat
      421 agcacaacag aaaaagggca ctgtacagat aagatactgc agagccccaa agtaattaca
      481 taatcttttc ccagctagtt attaaagtcc tcgtggaaaa ctgtaagctt ttgtacagtg
      541 aatagtataa agtgccgctg ggata
//
LOCUS       KCOD01001014             648 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 113053pyr ultra-conserved element
            locus uce-119, sequence.
ACCESSION   KCOD01001014
VERSION     KCOD01001014.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 648)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="113053pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>648
                     /note="ultra-conserved element locus uce-119"
BASE COUNT          184 a          133 c           99 g          232 t
ORIGIN      
        1 aaaatgtcag agttgatacc aatacaagga aagtaaattg gcacagttct taaatgcatt
       61 aaaaccttcg ctttgttatg actccttcag gaagcacctc aagatgtact ccatatccat
      121 agacatatat atgtaccgta gtttcaataa tccactaata tttagactta gcatgcttat
      181 tagctttaca gaaatacttc tttcctgtta cgtgtaagct ttttactcag ttgttctaaa
      241 cttactaaga attctctgct ctaacaatag taaaatgtct gtatgtcact ggttctgtta
      301 attctaatga ttggtcctag gctgttcctc cccttccttt aggaatggta ccttccagtc
      361 tctccatgtg catgaaaagt gacaagcatg ggtccccata tttctactta ttgggccacc
      421 ctaaagacac ggtttgtaaa ctctgcatgt atatttttgt ttctcacaac tgttaataga
      481 gtattttcca actacatgct agcttcgact tttctttcgt aactgattat ctaagacatc
      541 aaagcagctg tgcattctac aaatgtcttt tttgcatgtt acactgctgc tagtgtatat
      601 attcactcat gacaaaaatt tatcttctga atatgacttt tcaggtag
//
LOCUS       KCOD01001015             580 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 113162pyr ultra-conserved element
            locus uce-4775, sequence.
ACCESSION   KCOD01001015
VERSION     KCOD01001015.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 580)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 580)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..580
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="113162pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>580
                     /note="ultra-conserved element locus uce-4775"
BASE COUNT          191 a          112 c           92 g          185 t
ORIGIN      
        1 ccaactccct gcatcccttc gacccaaaat ttccattaca cttaaaccac ctgtttatta
       61 aagagcatgg gtaagtagaa aacagcctaa cagatctccc aagccacagc tatttagcct
      121 aacttgatct cctgtaatga tcagcgtttc ttcagaactg tgatttagat gttagaagaa
      181 ataatgattt ataaattttc tacacaaatg tgccacgaca cctctatctc caattgacac
      241 agaacatagt tatacatacc acagtttggt gattaacttg aatcacttca tccccagcat
      301 ggattttctt gcaccgatct gcaggtgact gaatttaaaa taaaagagat gatcaagaat
      361 acaggtctta ccggtcatca tctctctttc agcagtatga ttgctaagct atgtaattca
      421 ggttagattg ataatgacat tctactgtga aataaagaaa tatttaataa atcagtttgt
      481 tcttgttaaa cgatatgcac tattctacag aataaaatgt taagaaaggt gttgagtcct
      541 aaggattttt ttgaatttca ttctgataga aggatgcttt
//
LOCUS       KCOD01001016             668 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 113270pyr ultra-conserved element
            locus uce-1093, sequence.
ACCESSION   KCOD01001016
VERSION     KCOD01001016.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 668)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 668)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="113270pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>668
                     /note="ultra-conserved element locus uce-1093"
BASE COUNT          228 a          140 c          129 g          171 t
ORIGIN      
        1 aacagaacat ccgtattatc atttgaaggg aggggatgga ccggcgaggg aaagcttccc
       61 taatcaatcc agctgtagga atcagcctct taaaaaaata ctttaaaaat tctgcctttt
      121 accatagcag ttacttcagt tgctttcctt ccctttagtt aaagatttat atatgcaaat
      181 atatatctac atatagataa tcacacacat acacacgatc agactttaca cgctgcggaa
      241 gacaaaataa ctttggaggc gtaaatctta atgtcaatga caggaaggct ttggtgaacc
      301 attaccataa atctgacaaa cgctaatttg atgggtggct gtatctgtct gctgcaagac
      361 cagtctagac agtctattga gaaatcctaa aacacaactg tttgttccct gtaacaccat
      421 ctggatatgg caataagagc cgacccagtg ccattcacac atggatcaaa gcacatgcta
      481 atgccatcat gaagtcatac acataaaaaa ttcaatctga gaactctatg caattttcct
      541 aagtcctcag tgaagaaacc tcagacttag cacaactcaa gctaagtgca tgaagagggg
      601 gagagggtgg aaaaaaagaa gagaatattt aatgagcttg gccttcccga ggaatgttag
      661 gccaccca
//
LOCUS       KCOD01001017             561 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 113379pyr ultra-conserved element
            locus uce-1808, sequence.
ACCESSION   KCOD01001017
VERSION     KCOD01001017.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 561)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 561)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="113379pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>561
                     /note="ultra-conserved element locus uce-1808"
BASE COUNT          184 a          103 c          108 g          166 t
ORIGIN      
        1 atagatacta agtaaaatgt attgccactc atgaatacca tatacagaaa tatggaacaa
       61 tctattattt taaaaaggcg atgaattaaa atgtattctt attttaaact cactcacttg
      121 tgaccaatct catgtgcaat ggtaaaagct gaacctaggc caatgtcttc attaatgctg
      181 cagctccttt caggctcaca cattccagcc acagaggcca agcctgaata aacagaagga
      241 gacacaaagg gtcatgccaa ggtgtttcag tcttaaaagc cctagttata aatgcctgga
      301 ttctttttaa taacttctat gcacagaagg agcagttggc aaaaggttaa ctttctagtc
      361 atttgcaaaa tcactggggg gaatttcact ttgccggcta gacattaata ttttttgaac
      421 tgcagtcagt gctggaaaat gtctagacta ggggttagat ttataaattt tacttctggt
      481 aacttgggac cacctagtaa cttgagccag gagagggaat tcaagaaagc atttctattt
      541 taacattctt ggcctgaaga a
//
LOCUS       KCOD01001018             782 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 113486pyr ultra-conserved element
            locus uce-7399, sequence.
ACCESSION   KCOD01001018
VERSION     KCOD01001018.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 782)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 782)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..782
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="113486pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>782
                     /note="ultra-conserved element locus uce-7399"
BASE COUNT          192 a          147 c          175 g          268 t
ORIGIN      
        1 agtcagggta ggttgggcag gaaaacggga acgaggaggg taaataactg cagcaaaaac
       61 aggttctgag gaatacacat aattttgtct gctttagatc acaatagaat ttttaataaa
      121 taaatttctt tttctttgta aattttgaaa cagtagattt agcccagtca tttgtgtcat
      181 ttgttttata aaccatcttt tgttgtcccc ccaccccacc ccttataaat gttttagatt
      241 tgagtctctt gaacattgtc tttcgagttc attcggatca ataacggttc atgcactgaa
      301 ctgtgtattg aatttattgt gttaactgtt gttgtgtgat tgaaaggaga tttataagag
      361 ttatagtgat ttaggtgctc atgctctatt gctggcatgg gcaaatgact ctctatgggt
      421 gtgtcacctg taagctcatc atccacatta atgatctcta cagtccgtgt tggagcatga
      481 tggttctgcc ggtgatgctg tttcctcatt ttgtagaaaa ttaccagcat cacggcagcc
      541 atgagagtga tagccacaaa acaaccaatt atgattttgg tagtcttcat aacctcatct
      601 attcccggga tcccgttgtt tgcgtccgtc acaggaatgg tgaacgtttt ttctgttgat
      661 cttgtgctct gtggagtgag tgaggttgtc atgttaatgg tttcccagtt ggtaactggt
      721 gtgggcccaa cctgctctgt ggtctgtgcc tcatcctgag aaggttccac agtctctacc
      781 gt
//
LOCUS       KCOD01001019             531 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 113595pyr ultra-conserved element
            locus uce-3479, sequence.
ACCESSION   KCOD01001019
VERSION     KCOD01001019.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 531)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 531)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..531
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="113595pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>531
                     /note="ultra-conserved element locus uce-3479"
BASE COUNT          161 a           94 c          128 g          148 t
ORIGIN      
        1 tttcaaatca tattttagtc acagtcagag atgtgtggct agtctttcta tttcctcatc
       61 tcagaaggtg tccactaagg attcccactt caattgagca ggagaggaca gtgcagactg
      121 aatacaaaga gaagtggaac aaggttagcg aagtgtgcag ttggtgagat tgatgttgat
      181 acccttcact gccaagtgaa atgccaataa tgcttgtata gcattttgtg agggcaatgg
      241 gagtattgat tcctgagcaa taataaagaa tgaagctgct ctctcaggta taaaaatatt
      301 ggcaactgtt acaaagaatt gactcataga ggcctgagtg ttggcctgtc ttaatacaaa
      361 taattcaggc ttcagaagga tttcaagagc agccaggcat ggtcctcagg cacattctct
      421 gctattaatt tatctgcagc tttcacaagt gtccagccaa ttgggtgcag ggacaaaaat
      481 ggatttctga aggcttgttg ggagacaata tgaaaagcca gttgagccat g
//
LOCUS       KCOD01001020             481 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 113707pyr ultra-conserved element
            locus uce-7649, sequence.
ACCESSION   KCOD01001020
VERSION     KCOD01001020.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 481)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 481)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..481
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="113707pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>481
                     /note="ultra-conserved element locus uce-7649"
BASE COUNT          128 a          121 c          102 g          130 t
ORIGIN      
        1 ttcctcacgt agccctgccc gccctcccag aaatagtctc ttccctctga agccctctcc
       61 tacagcagtg cgaggtcagg cacacaaagg tgctgtcccc tgattgcagc aaacaccgcc
      121 atgtgttgta tgtttgatga attaaaagga tgctgccaac ttaattacac tgtaaccctt
      181 caataaagga agggcagagc tgattaacta gtgaataatt gggggctgat tgatggcttt
      241 ctccctcact gctaaaggct gtatatataa ttattttgcc tgtgggccta attttgccac
      301 tgttagcttc cacttttgtc atcagctgta atttatggat ggggcctgaa gccttaaaaa
      361 aggctggaaa atgaaatagc cccaaatccc cagatatgtc acctggaaat ggccagcagg
      421 cagcctttaa cgtcaacatt tgcagccatt tagcagcatt aacacctcat gcttagccgg
      481 a
//
LOCUS       KCOD01001021             720 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 113816pyr ultra-conserved element
            locus uce-6569, sequence.
ACCESSION   KCOD01001021
VERSION     KCOD01001021.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 720)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 720)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..720
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="113816pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>720
                     /note="ultra-conserved element locus uce-6569"
BASE COUNT          229 a          145 c          116 g          230 t
ORIGIN      
        1 agatgtcgtt tacatcacta tcattattaa gcgtgtgtct ttgtatgatc cacagcacac
       61 ttactgcagg aaccaggaat aataaacaca ggggtgtggg tctttgcatg gagccttagc
      121 aatgatgaca tgaattcagc tttccttgat aaaaactgat attccatgca cacatattta
      181 tcaacagtga ctagtcaccc cttcctctgg cagcaataat tatgagcggt ctttcatctt
      241 ctttaacaag ctctacttcg cacgcaaagt ctcagtgacc tcctcaaggt gttagttgtt
      301 tatcagggcc cattcagcag cagcagtctc tttccagtac agtccttggt atggctaaat
      361 tccattgtcc ctttttcagc agtcaaaaat ccatgataaa ttctgtacaa cactgtagtt
      421 aatataacag cagcaccaga tattatatta attcatttgc taaaagctgt ttgcaattat
      481 ctctctattg acaatattta aaagtaaatc aatgtacatc tctaaatatc agaaatgtat
      541 actttgataa atacattatt gtacaagaat tctgacatgc aggtcatgct atcgggctag
      601 gcaagaacat gttacatggt caacaataag ttgagtttct tttcctaaca aaaaataaaa
      661 catgacaatc aggtattatt caacaatttc aaggatcact taatatttca gtcattatgg
//
LOCUS       KCOD01001022             324 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 113923pyr ultra-conserved element
            locus uce-2313, sequence.
ACCESSION   KCOD01001022
VERSION     KCOD01001022.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 324)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 324)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..324
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="113923pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>324
                     /note="ultra-conserved element locus uce-2313"
BASE COUNT          124 a           68 c           37 g           95 t
ORIGIN      
        1 gaacagcagt gataaatctt acagctacca attaaaccac aatgccttta tgaaaatttt
       61 tttctgttct cttatttatt gacagatttt tttttaatta caacacaatg aaacgatggt
      121 aagtacataa gatgcaatag tataaaaagt tttaaccctt cccttggtta agacacttac
      181 agcagacaag aactgcccca ccccaattcc ccccttctca aatgaaaaca aaaaataaat
      241 ataaattaat aaatataaaa caaatcactg cacagccctt aactctttga ttgccatggc
      301 aagaaccata atgatgattc tagc
//
LOCUS       KCOD01001023             873 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 114033pyr ultra-conserved element
            locus uce-342, sequence.
ACCESSION   KCOD01001023
VERSION     KCOD01001023.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 873)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 873)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..873
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="114033pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>873
                     /note="ultra-conserved element locus uce-342"
BASE COUNT          320 a          172 c          129 g          252 t
ORIGIN      
        1 tttctgaagt tttgaaggtg aactcgaaaa atggaactga aataacttat aatgcactat
       61 ttaactgcat taataaggat taagcttaca gaatatgcag gaaaagacgc acgtatgcgc
      121 acttacacac atgacacgag ccatacctac aaaagacttc ctcccatggc tacaccattg
      181 ctttgcaaac aacaagctaa tttgggttcc tatcatgcat ctgatcggtc atacagcaat
      241 acaaaacaga aataagtaaa gacgaccatc tgcttgttag ctgaaactat aaaagtacat
      301 ctttttaata aacaataaaa ttagtttgac agggcagaga ccacctgaat agaaaatcaa
      361 atatttcatg ttatttaagg tgtatgtctg ctggctatta aaatactcct ctttaattta
      421 ttacagcaac acacacaata ctcatgtcat cctcattttc taaatcaata atcagcacag
      481 catgcttcat taacagtgac caatcacgaa tgagctgggg atctcatttt acaacatgag
      541 cattcctaag acataaacca tctgctactt gtagtaacag aaaaatcaaa ttaatccatt
      601 cttatcatgc attcagattt taaagcaatt aaagatgctc ttagtgtaat cgcagccaca
      661 gaagtagttc tgtaatgagg aaagcaaact cttcactgaa ctttctgtca ttctcaatac
      721 atttgaaaac tttacaagct ttctgcactc cagtgggcca ttgttctctg aacacagatg
      781 ttgaaaacaa caagcaattt ttattaaaca tttaatcttt gcacatttga aagagtttaa
      841 atactgaaca gtgatcaaaa aagagcataa aac
//
LOCUS       KCOD01001024             483 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 114144pyr ultra-conserved element
            locus uce-7107, sequence.
ACCESSION   KCOD01001024
VERSION     KCOD01001024.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 483)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 483)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..483
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="114144pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>483
                     /note="ultra-conserved element locus uce-7107"
BASE COUNT          147 a           96 c           86 g          154 t
ORIGIN      
        1 cacagagtga gcggcataat ttaaaaatca aagaaattca tttcagtagt aaaaggttaa
       61 cagcctttag gaggaacact ttttaatcac ccacgtctag actctatcac tcgaatcacc
      121 ggcagcagga gtgaaatatg gctaagcccc cgtcaccaaa cagcacctaa agactgttgt
      181 atttaatcat gtctgtgcac tagttatgga ttttcattat gattcccgat gctgttgcgc
      241 tgtgtaaaat attaatatcc atagtaatga tgcatgaagc ttggagtgta atttcttcac
      301 tctccttgtc tgatattaaa ttgttaccac tttatcattt gtgtagaact gcacgtttca
      361 attaatcttt ccgtatcagc agccctgatt aatatagatc atgattcata agcttatcgt
      421 cactatagtt ttaacagatc atttataaag atcttaaatt tcagggcctg ggaggcgcag
      481 cca
//
LOCUS       KCOD01001025             534 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 114252pyr ultra-conserved element
            locus uce-5834, sequence.
ACCESSION   KCOD01001025
VERSION     KCOD01001025.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 534)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 534)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..534
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="114252pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>534
                     /note="ultra-conserved element locus uce-5834"
BASE COUNT          148 a          113 c          108 g          165 t
ORIGIN      
        1 ttttattgcc ttgttttcct gtaaagtcaa caagttaaac aacaggattt aaaagagata
       61 atacatcctc ctcctgcttc ctggtctcct cgaggtgctc cagctcaact tactggcctt
      121 ttgcaggtga tttatagaac ccgatggtta ttgtatggct aatgattcat ggaacttcat
      181 taaataccaa gtatgtgcct gcttactgtc tgtgcacact gcatattaga acctttgcac
      241 tttgcaaatt gcccccatta aagccgcaga caaaaggtcc tctcagtagc ttacatattt
      301 tcccacatgt gagagagcaa ttggaaactt cctcttgata actttttgaa ttagaattta
      361 tgagaagggt cttttggtct cgttgcctaa gggctgaaac agatcccagt gtgtacaagc
      421 gttcctttga tgcgtggagc tgcacagggt aacatttttt aacaggatca aaaagcgtaa
      481 tgcagggaca atgtgtctct gacacaagga gtttttccaa ggctaatcca aaag
//
LOCUS       KCOD01001026             504 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 114362pyr ultra-conserved element
            locus uce-7513, sequence.
ACCESSION   KCOD01001026
VERSION     KCOD01001026.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 504)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 504)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..504
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="114362pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>504
                     /note="ultra-conserved element locus uce-7513"
BASE COUNT          154 a          105 c           89 g          156 t
ORIGIN      
        1 tttcacaagt agcacattcc tgtttctgtg gtttcccgca tcttgagaca actcttagac
       61 aaggatgtgc aaaattagct agtacaagca ctttacttgt tcaccggaca tcaggcagat
      121 gtggggataa aactgtcaag tctgaaaaca caaagagaaa tattgctatt ttctattatt
      181 cacattcttc ccatgagctg tttgctcagt tgccatggca taggcggtga gattttataa
      241 tttttcccct gcctgccatg tgctcataca acaatgtgaa tttaatcagt ccagacagtt
      301 ggttgtgttt tgtccatgtg agtggaataa aacttttctc accagctaaa cccacaaagt
      361 atctaaaagc cataaataat cagtaactcc tatgacttgc acctgcttgc tttatttgac
      421 caaggataca gaaaggctca tataatgaac agtgttccca agcattaatc acctctgatt
      481 gcttataaaa atcaaagtag atat
//
LOCUS       KCOD01001027             719 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 114471pyr ultra-conserved element
            locus uce-2553, sequence.
ACCESSION   KCOD01001027
VERSION     KCOD01001027.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 719)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 719)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..719
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="114471pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>719
                     /note="ultra-conserved element locus uce-2553"
BASE COUNT          241 a          118 c          155 g          205 t
ORIGIN      
        1 tttccacaac aatttgtgca cacaaatatg ttagcaaatt caaaatctac ccaaatattt
       61 gttataaatg caggctgatt cctactccta tctatttctc acacatatgc atacagataa
      121 atgtgcacac atataccgag tatgtactca ttctctgggt aatcagagac acagataaaa
      181 taaagcttct agagtgacag acattctgca gacagggttg ttagtttatg taggctatag
      241 gcagagtcga ctggaaaatt ttgatcactt taatttacta tatccagcat gcctgctgta
      301 ctcgtccagc acttttatca agccctgtga ggtggtattg atttttttat tttctatgta
      361 ggataagaag acagagagtt aggagcaaga gtgaatgaag aactttcctc agattactgc
      421 tattctctag cttattgcat cctgtcgttt gtagtttcag atgatgtcca gtatgtcagg
      481 gttgcttgaa gcaataaaca gggtgaataa caatggaaag gctagatgag aaagattgaa
      541 aaaggagaaa gaggcagcaa agaaagtaag aaagtgaatg tgagaaatag gagcagaggt
      601 tgagaaaaag tgtcctaggt gtggagagct tgataagtgc attcctttaa agaaactgta
      661 accagccatg gcagtttttc gaccaagagc tacacataaa accagaattg tgaatgact
//
LOCUS       KCOD01001028             592 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 114582pyr ultra-conserved element
            locus uce-4339, sequence.
ACCESSION   KCOD01001028
VERSION     KCOD01001028.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 592)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 592)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..592
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="114582pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>592
                     /note="ultra-conserved element locus uce-4339"
BASE COUNT          180 a          123 c           90 g          199 t
ORIGIN      
        1 tttgtgagga aacgtctaat tataagtgac actactcaca ctgccctctt aaacactggc
       61 ctgaggcatg tgagaaaaaa ttattctgac agctatgtct cacctttatg ggcgtacacc
      121 aaagaggaac agaaaataca taacacataa ttttgcattt ttattataag gttgaaacta
      181 aacactagga aaccttgtca gtgcctgcta agctgattcc aattaaagct tctggcagag
      241 ttccagctgt tttactacct caaatagcac tgaacataac aaggtttatg aagcattcaa
      301 aagtcaaata ccctattaac ataaacatgt agtgaaatca actcttctac aattttcagc
      361 ttgctttctt tctttcattt acattggact aatctaagat gatgtctgtt ttctttgttg
      421 catctttttt tctgcttgct ggaatgcaaa acaagattta gtatttgaac agtgcctgat
      481 ttgccctgaa aacttactcc ctttggcaat tttattacaa cactttcaat cccactctgt
      541 ttcttagcag catgctgaag gttagtttcc tactctgctt ttaactccaa aa
//
LOCUS       KCOD01001029             826 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 114693pyr ultra-conserved element
            locus uce-1598, sequence.
ACCESSION   KCOD01001029
VERSION     KCOD01001029.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 826)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 826)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..826
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="114693pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>826
                     /note="ultra-conserved element locus uce-1598"
BASE COUNT          236 a          161 c          172 g          257 t
ORIGIN      
        1 agaagggaag agaggctatt tcaaagtaat tgcagggatg gttaaaacgg cagacaggca
       61 gtaggattgc aataaataat aaactgtggg ccacaacagt gagctcacag ataatataaa
      121 atacagttcc taagcgagta acggggggag gaggggggga gagaaagttc ctgtgcactt
      181 tgttcaaggt tctgcacctc tctaagcagc tgtcacatcc gtacattatg gtacattgaa
      241 tctgaatgag gctctccaca tcaaaacctt gcatccatta tgatatcatc tcctgctcta
      301 agctgtaatg cttattaatt ctgcacccat actctccaag cttcagcaaa tgtattccat
      361 cagcctagca tttaatttaa ttagtacagc tgggctctca ttctcctttc tgtgtcagag
      421 gtattgtcag cacgttctgc tataacacaa ttactgattg cttttagata ggcagaaata
      481 tgattagggt attgggtgac tgtatcataa gccttattag attcatttga aatctggaga
      541 taaataggaa acttttattt gcagtgtaat gagattatgc ttattaggcc aaggcctcac
      601 aaccttttgc aaagaacata gtgtatcact aggattatac tctggaacca cactttttgc
      661 tcatagcatc caagcaattt ctcagcagct ttgaggttta actgttgtag ccctgtacac
      721 attttagaat tgttttctgg ctcagtggct ttctcctttg tgtatgcacc ttccaccatg
      781 tgatttcttc tgcttaaacc ggaggttgtt ttgttcaaaa gaggaa
//
LOCUS       KCOD01001030             790 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 114804pyr ultra-conserved element
            locus uce-7352, sequence.
ACCESSION   KCOD01001030
VERSION     KCOD01001030.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 790)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 790)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..790
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="114804pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>790
                     /note="ultra-conserved element locus uce-7352"
BASE COUNT          245 a          163 c          134 g          248 t
ORIGIN      
        1 caaatttgtc cctgactgtt ctgctctcaa tggaagctga caggtcatca ttcaccttat
       61 gatgtcgttt caaccccatt atcttttcta ccttgtttta gcacctctct ctggcaaagg
      121 tagtgagtaa gatgttgaag aactgaggtg gtatttcagg ctgtcggcca gcaaatgctg
      181 aataataatg gaatttgttt gcttacaaat tgagcaattg aatttagaca ttgagggggt
      241 cacctctgtg atttgtccca tccccagatg gtcaaaaagg cagagttaca gggccagtca
      301 tggaactctt ttgtagtagc acaacatacc aaccatacaa ctactaggcc atcccccaca
      361 gttacaagta tttcaaggtc aatttatcaa tttaacagct tcatcttctt aatcactaaa
      421 cttctgtctc tttgagcttg tgctgaaaga ctgtggctgc taattaaaat ggagctttac
      481 tagcaagtac acaaattaga tcctgtcagt aagtttattc taactattgg tcatttctaa
      541 atgccttttt aatcccctaa tttttacatt aaaattcaaa agcctaacaa tcttaatcac
      601 ccctacatca aattcatcat taagaacagg aagccagatg gtataatttt gatttaccgg
      661 acttcagcgt gaattaatgt actgagtgcc gataatgaat acatcaaacc tgatattgca
      721 gaaacctatg aatctggcat gttaaattaa taacacactt tgcacaatga aagcatgtaa
      781 gctcatataa
//
LOCUS       KCOD01001031             616 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 114912pyr ultra-conserved element
            locus uce-7032, sequence.
ACCESSION   KCOD01001031
VERSION     KCOD01001031.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 616)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 616)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..616
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="114912pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>616
                     /note="ultra-conserved element locus uce-7032"
BASE COUNT          149 a          126 c          139 g          202 t
ORIGIN      
        1 acctggcagg tgtttccagt gagcaactca caccagggtg ctgccttctc actgtctcag
       61 taccttggga agttgttgaa aggattacag tgtcccttca tttttcatat gcctgccagt
      121 gtaatattgt gcctaacctc acatttgggc atcgcccatt ctgcagtgca tgtctagtgt
      181 ttatttcagt gtctgtcaga gacccagggt taaaactatt ggaggtccag atgacatctg
      241 gcttctcagc tcctccagaa tattggctgc agtgtttatc agtgcattat tcatcaaaac
      301 tgatgatgca aagtacaaca tgctgtctgc agctcagcgt aagagtggaa agaagttggc
      361 agaaatgcct agtgttctgt gagcagcatg taatcaatag tctgggtgct tgttcacttt
      421 atgttgatga ctattccctc tggtacgtct ttgtatattt ttgggttctc tgtattacca
      481 gctgtgcgat ttttctctct cttttcttga taccagctta gatagaacag aaggggcaac
      541 cttttgtgca gtaggtgtca aatcaaataa actatttgca caaagcctgg aaatgagagt
      601 cattagttga gatttt
//
LOCUS       KCOD01001032             544 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 115023pyr ultra-conserved element
            locus uce-913, sequence.
ACCESSION   KCOD01001032
VERSION     KCOD01001032.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 544)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 544)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..544
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="115023pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>544
                     /note="ultra-conserved element locus uce-913"
BASE COUNT          151 a          114 c          100 g          179 t
ORIGIN      
        1 tgttagccta acccaaaatg tgttcactgg atttgaaggg agaactccca ttccatttta
       61 ccttcacaat ggtgctggaa tggttgaata aagtgtggcc ctgctgccca tatgccattc
      121 agcttctgtc tgtctttttg tttacactgg gaatacaata ggaactatag tccttccaat
      181 gcatcattta taagtgtatt ctacctctga atgtacagac agaactggct ctgtgaatga
      241 gctctgtgaa tattgccaag acactgtgct ttgttcagca ttattcttca caatagatac
      301 cacactttgg aagtaatttt aaaaagggaa tcaaaatagt ggtactttta gcctttgttt
      361 cttttatacc acactgcatt ctctgtctct cactcagctg cttctattat actgacaaat
      421 taaataaacc actccattgc taaagaggct tgggcgggct gggcttcggt acactgccgc
      481 actaggaagt cgaaataaac attaatgccg gttttattct taacaaattt aagctaactt
      541 tagt
//
LOCUS       KCOD01001033             538 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 115133pyr ultra-conserved element
            locus uce-7833, sequence.
ACCESSION   KCOD01001033
VERSION     KCOD01001033.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 538)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 538)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..538
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="115133pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>538
                     /note="ultra-conserved element locus uce-7833"
BASE COUNT          160 a           97 c          124 g          157 t
ORIGIN      
        1 taaactggtt ctgtggtaag cattacagtg taggcattgc taattattta tttcctgctg
       61 ttaagcagaa aacaggcttg actgccctca caacagctgc agcattacaa tgtgtgaaac
      121 actgtgaact ttttgtgcct ggtctcctga agagctctgg gggcaatggg tgttacaagc
      181 aggtagacta gttgtcagaa gagccttctg aagagtccta gtgcatcagc agcaattaat
      241 gcaggtggta ttttagacaa gggagctaat gagctttaat atgcatgcag gtgagggagt
      301 gctgaatcag tagagccatt aatgaaccta tgacagccta attagctaca atttaaaatc
      361 tatggaatct aatcagaaga gctgaacact gctgcaaatc tgtgtatgaa tgactctttc
      421 taaatactcc aatctgttgc ttagtcactg attgatagta attgccctcc attgtgtata
      481 ggaaaatgcc caattttgtt ctgatagagg aggacacaac attgaagtta aatgcctg
//
LOCUS       KCOD01001034             354 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 115242pyr ultra-conserved element
            locus uce-7661, sequence.
ACCESSION   KCOD01001034
VERSION     KCOD01001034.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 354)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 354)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..354
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="115242pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>354
                     /note="ultra-conserved element locus uce-7661"
BASE COUNT          113 a           70 c           69 g          102 t
ORIGIN      
        1 ggggtcagat accaatgatt atatcacatt ttctggacac aaaccctccc ctgatgtcag
       61 ggtaagaaac cacaaacaag ggttaggtca gaggtgtacc cacagacaaa agctgaagta
      121 ggtagcccac caggcacagc tgattggctt taataggtgt tgattacact gctcatattg
      181 catgaaatta aaaagcttac aaatgttatg agccattacc cttccattta agagatctta
      241 tgacaagtta gcaacattta atgaaatcct ttttaaaatg ccagaggcac gagattttgc
      301 tttgaaatgc aacttgtgaa gttatttctg aaagtttcct gttcttgcac atct
//
LOCUS       KCOD01001035             465 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 115348pyr ultra-conserved element
            locus uce-3610, sequence.
ACCESSION   KCOD01001035
VERSION     KCOD01001035.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 465)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 465)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..465
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="115348pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>465
                     /note="ultra-conserved element locus uce-3610"
BASE COUNT          117 a          125 c          112 g          111 t
ORIGIN      
        1 aattagacct caggtccctc atcttttttc cattcactgc tttcgacgac tgggcaaata
       61 ttattcccca aagtcccccg gggctttatt tgtgtgattt ctgccttggc agccccgctc
      121 ccctccccca gcagcgcact acaaagcgtg ttgtacaggg actccattaa tcctacattt
      181 cctagatggt atctgaggca cagtgggttt ccacagaaat taatttgtcc tgacaacagg
      241 cctaaagatt ggagtccagg gatcacttgg caaattccct ttaaactgag cacaataata
      301 aacagaaagc tgataacgac agttctgaaa gaccacacag aggccggagc ccgagccgag
      361 gcgctcggtg tggatccgcg gatgcctgga gccgggagct ttaacgcctg ataggaaaat
      421 gagctgattt atgcaggccc agcactggga gggctcactg cagct
//
LOCUS       KCOD01001036             331 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 115452pyr ultra-conserved element
            locus uce-3859, sequence.
ACCESSION   KCOD01001036
VERSION     KCOD01001036.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 331)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 331)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..331
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="115452pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>331
                     /note="ultra-conserved element locus uce-3859"
BASE COUNT           84 a           94 c           87 g           66 t
ORIGIN      
        1 agtccgtcag gacggagcta ctggtgggat ggagctgctc caaattctga caactggaat
       61 cactgaccca aactcatttt gtgctgctac gctgctgctg aaaacctcag aaacttacca
      121 tctaagagct ccagagttac agtgccatca acgtattccc accagtgctt cccgtccgtg
      181 gagactggga tctcccagtt ggaccactta caggccaggt ggatacagac gcaggccaca
      241 acgggcgggg tgtactgcag gctgaaggtg gtcaggtgca ggctgacaaa caaaaagcca
      301 tcaactcctg agctgcaggc cagctccatc c
//
LOCUS       KCOD01001037             765 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 115557pyr ultra-conserved element
            locus uce-1776, sequence.
ACCESSION   KCOD01001037
VERSION     KCOD01001037.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 765)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 765)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..765
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="115557pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>765
                     /note="ultra-conserved element locus uce-1776"
BASE COUNT          227 a          155 c          145 g          238 t
ORIGIN      
        1 gtagttgtgc cctgatttct gctcccttta gtctcctgtg caggcaggga ctccatttcc
       61 ctactcctgg aacacacctt catctccttc catccataat taaaactgac ttaccttatg
      121 tgggccattc acctcctatt tagcctacaa aaatagctga gaggtttaca ggaaggaagc
      181 agttaaatga taaaaatgtg aaatgttatg cagcaagctg tgtacaatta actagaattc
      241 aaatatacac cttgttccaa tccaagccat ttatgagata aaaatagtct gctagaagaa
      301 tgtcatgatt aatgaggtga gactccagct aattactgtt tcctccagaa gtaattaggt
      361 tggcattgct aatcaagatg aatgaacact ctgacccgct tttttaaatg taaaactatg
      421 agctgcagca gcaataacat catttagttc aggcaatgta gtctttatta ggcttgtagt
      481 ttgattaaat tcttttgtta taccaggctt tccacacatg aacagatgaa tgctgtgatg
      541 ttcaaagagt ttgtcacctt taattaaaga ttgaaaacgc ttgttcaatt catggggcaa
      601 tacacaggac agctctaaat tgatagcttt taagtggggg tgaggaagtc atagggtttg
      661 cccagctgca agaggatccc tcctccttcc acagttttcc gtctcgctgg aaaattagta
      721 tcagatattt gtattgactc cattaggcac actcatttca tcaga
//
LOCUS       KCOD01001038             540 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 115661pyr ultra-conserved element
            locus uce-1570, sequence.
ACCESSION   KCOD01001038
VERSION     KCOD01001038.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 540)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 540)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..540
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="115661pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>540
                     /note="ultra-conserved element locus uce-1570"
BASE COUNT          180 a           91 c           86 g          183 t
ORIGIN      
        1 tttttagtag ttgcaatgga ttataaacct tttgtacaga ccctaaatgt caccaatatt
       61 actgaatgca aagttaaaac cgctgagaaa tgcctttaga atagcagtag tgaaatttat
      121 atgaatttct gttataggat aaaatgaatc tattttttta aacaaaggac agtcagtctg
      181 agatttacac ctgatttgtg ctatagtaat ctttgaaatt aagaagtgta tccttgcatt
      241 tcattaaatt ctggctaatg agataactgt cttcccaagg agggagtgat gaagtactca
      301 tgccataaag cataaattaa tgctgcaagg ttaaacactg gaactaactc atgtttcaac
      361 aaaagcccct accagcagtt aaattaactg acataaatac cataaaatct gtctttattt
      421 tagtctcaga tgatgcttct ttttacaccc ctgctttcag tttgtataac tcatttttgc
      481 acattattgc atgcatcatt tgccatttaa aggatcagct tcaactgaga gatttaagta
//
LOCUS       KCOD01001039             474 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 115768pyr ultra-conserved element
            locus uce-3499, sequence.
ACCESSION   KCOD01001039
VERSION     KCOD01001039.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 474)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 474)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..474
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="115768pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>474
                     /note="ultra-conserved element locus uce-3499"
BASE COUNT          162 a          103 c          112 g           97 t
ORIGIN      
        1 cccgtgccca gattttgttg ggggagggtg aatgaagtga agcaagctac aaaagtcaca
       61 gggcaggcag gactgaggac tgaagaaaat gggattttct gagacatttt tgtcatgcca
      121 ggatggagga catgcagtat tagaaatgca gaattccccc cactcacttg tgatatcata
      181 aacaacaact gcaacagtgg agtcacgaat gtagctagga atcaagctcc tgaaccgctc
      241 ttgacctgct gtgtcccata attgcaaccg tacctaacaa aatcagtcaa acaagcaaga
      301 aaaataagaa aaaaggtcaa aaaaatacct acttgtgata tcgtaaacta ctacagcagc
      361 agcagagtca cggatgtaac tgggaatgag gctacggaaa cgttcctgac ccgcagtatc
      421 ccacagctgc aacctgatct gtgggtggga gaataaaaaa gccaaactgc cact
//
LOCUS       KCOD01001040             875 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 115878pyr ultra-conserved element
            locus uce-2147, sequence.
ACCESSION   KCOD01001040
VERSION     KCOD01001040.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 875)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 875)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..875
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="115878pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>875
                     /note="ultra-conserved element locus uce-2147"
BASE COUNT          284 a          148 c          175 g          268 t
ORIGIN      
        1 aaaattctaa agggaaatat actgaggcta catgtcagat gtttctctct tcttttctct
       61 ccctctcttt ttatgcacac aacacccata tgcacatgca catatattaa tatatataat
      121 atatgcagat attgatggaa ttctatgagt tgaaagagag ggaagatgtc tttaaggatc
      181 catatctctc acagcagata tatgttatta tcactgaaat gtggccttca gtcttgaaac
      241 agttaaaaga gttctacggc cacaaaagaa gagatttctt cagaattatc tcccgcctca
      301 catttgctct taggcaagca gtttaaaaaa gcccagtgat tgagccagtg atccaatttg
      361 aaatgcagaa atgattagag ctgcttgcct catttcatat cgaaattctc tgatttatga
      421 cagggctgca gccaagatct atctccaaag ggaattagtg tgcaagtttg catatttttg
      481 ttatttaggt ttctgatagc agctgctagc tagaaatact gaactgggag gtggtggtgc
      541 agggtttttc agccattgga gcaaagaaag ataagagcct tatgtttagg acatttagac
      601 cccttgacca tctcaccata cagtaatttt taaacttgga ttgcagtaat acaggaatcc
      661 agcggaatgg ttaattgtag ttgtggagaa aggaattacc aaaattctgt ctccatgttt
      721 taactagggg aattttaatg aggcataaaa cttcaatcat gcgactgacc tgtggggcag
      781 agtgtagaac atataatgaa acagaaatag aattctgaaa aaaaattatt accttatctg
      841 gaatttacat gaagtgttaa caggaaatta tgcag
//
LOCUS       KCOD01001041             652 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 115988pyr ultra-conserved element
            locus uce-2843, sequence.
ACCESSION   KCOD01001041
VERSION     KCOD01001041.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 652)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 652)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..652
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="115988pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>652
                     /note="ultra-conserved element locus uce-2843"
BASE COUNT          196 a          104 c          121 g          231 t
ORIGIN      
        1 tttttcagcc ttgaacttct cgttgtactt ggacttgtat ttccttttga ggtggaaggc
       61 aaaactgtgt gctttccatg ggctaaacga atcaggctct aaacttttat ctagatctgt
      121 agagcttgga tataaattga aaagatcaca actatgggga aaagacctat actgtaaagg
      181 cctttctgca tagattatga acatcataac tcaataattt ttttttcaaa actatagtta
      241 taattggacc caatgggggt ctctctcttt gatcagatca cagtaactgt gactttacac
      301 tggaaaatgt cactactgtg aaggtttatc acctgtagag ctggtctttt ctctgatgcc
      361 gtgttcagtt ctcattagca ttattcaaag tttagttgtt aattaggttg acacttcaat
      421 tacaatcatc atctacaaga gcagtcagga ctcttgcata aagaaacaaa aaattcttgc
      481 attatttcca aaatgaaagc tgttttggtg ataaatttgt atttataata tcctgtttaa
      541 agagtaactc cgaatgttat ttagggactt aaataatgct ttacagaggg atgtagaaat
      601 gtgtattcta tgtaaataga gttgacttat ttccaggtgt ctttcatgat gg
//
LOCUS       KCOD01001042             709 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 116098pyr ultra-conserved element
            locus uce-627, sequence.
ACCESSION   KCOD01001042
VERSION     KCOD01001042.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 709)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 709)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="116098pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>709
                     /note="ultra-conserved element locus uce-627"
BASE COUNT          216 a          129 c          138 g          226 t
ORIGIN      
        1 tgctctgctg gaaaaacatc atatttctaa ggttgaggct gaatgtatga atgataactc
       61 tgtgtttatt gtatgtcact ttttaaaatt tcatttttat attgatcaca cttcacatat
      121 gtttccaatt acataattct gcctcaaaat ggaagagatg tgataaatgg acatttatac
      181 atctgtgata aaaagataga gcaaacagcc agtaatttac atatctgctg aaatactgca
      241 gactggcttt gtcagtgctg ctgagtccat ttcaaggatg tcgcccttag tccattagtt
      301 tggataatga gccctataaa gtacatttat aactcgtggc actgcaagga gatggattct
      361 aattttcatc cttttatcca gacacattga aagaaggtca atggagggtt cgctgtgatt
      421 cattgtcgca acacagatca gatgacagag acctgataat gtcagtgcag gagtgtttgc
      481 tgcatttgga agcactactt gaaagaaatt ttctcagcat caccctttga agtaaagtgg
      541 gaaattaaaa gctctctctc tcagtttaaa atcttatcac atatgtgacc tgctgctatt
      601 cctgaacaaa ggagaggaaa cagcacttag caggaaaata gtgtcgttgc ttttgctggc
      661 tttgagtgat gcaacatgac atttaatcaa cctttcccct tccataatg
//
LOCUS       KCOD01001043             575 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 116208pyr ultra-conserved element
            locus uce-5968, sequence.
ACCESSION   KCOD01001043
VERSION     KCOD01001043.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 575)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 575)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..575
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="116208pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>575
                     /note="ultra-conserved element locus uce-5968"
BASE COUNT          204 a          113 c           85 g          173 t
ORIGIN      
        1 agaatttctg ttaaatatat atatgtcttt aattgagctg ggaaagctaa gtttagtaaa
       61 accacaagca ttcccaaagc tttaaaatat taacgggtat ttggttaacc agctgtggtg
      121 ttgcaaatct catgtacact caaagcactt cttacaaaca agaactgcag aactaaacta
      181 acctcggtct gcggtcacaa tcctttggta aggatggaca cgcatatcgt gccttcgaac
      241 tttagtagcc accgcaccta gttaaattgc aattaccaag acaaaacatt cacagaaaac
      301 attaacagca ggtttatcaa aatggattta aatgatcatt aactacaaaa gttcaaaaag
      361 caacaagtta aggcacagta gtttcaaatc ttaatcttaa aaagaagttt atctgtgcag
      421 attaatattg catttatttt aaacatcctg gccttaacct gtttaatcca ttcatttaca
      481 atcccaaaat tacagtattt catgaaatct attagaccca agcacattta agctttacta
      541 gtcacatatt cactgaagtg cctttcttgc agcag
//
LOCUS       KCOD01001044             564 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 116317pyr ultra-conserved element
            locus uce-4899, sequence.
ACCESSION   KCOD01001044
VERSION     KCOD01001044.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 564)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 564)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..564
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="116317pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>564
                     /note="ultra-conserved element locus uce-4899"
BASE COUNT          180 a           87 c          123 g          174 t
ORIGIN      
        1 aagtgagcat gtgctgcata ggcagcagtg gagctgacaa agattccttt agttaaagca
       61 ggcatatact gaattttgaa ctacctttta aatacttaaa ttgtcaagca agcgttctgc
      121 aaaggaaggg ttttcagtat ataattcccc aatgtaggtc aattaaagct ataacacttt
      181 cctaaatttg aatctctaga tcaagtgagt tgtacatttt ccctctgtgc atttatttca
      241 aatgttaata aagttttcat ctacaaaagg cttagaattg acagaacaaa actctttctt
      301 tttaaatgat gacaactact actgtttctg tctgcaggta gtggaggaca tgctagagga
      361 cgaggaagaa gaggatgaca gagatgacaa ggtaattatc tttcctagca cttcagtatc
      421 tggggatggg agaatttaga catgacactg tttttaccga cagttaaaaa aggagttgat
      481 gtgttttagt ccagaaaatt ggacagagct gtttatcatc cgctatagtg ggttgaggga
      541 aaggttagag gtctataaat cctg
//
LOCUS       KCOD01001045             624 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 116424pyr ultra-conserved element
            locus uce-4400, sequence.
ACCESSION   KCOD01001045
VERSION     KCOD01001045.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 624)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 624)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="116424pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>624
                     /note="ultra-conserved element locus uce-4400"
BASE COUNT          194 a           96 c          122 g          212 t
ORIGIN      
        1 aaaaataaag tcaaatacga taaaaatcag gttgtactgc tgctgttggt tttttgcttc
       61 cagggctgtt cattgctagt tagagttgct aattctgtag atgcttcatt ctgctgtaca
      121 aggaggttaa tctacaatta aacaatattt cctcttggcc ctccattatt ttctgaaaca
      181 gatggttcat catttcctgg gctgttaaac acagcaaggt taaggttaga ctcttgggaa
      241 tcagctagtt ttgaatctta ttaggctgta gaaggaaaac taataagaat actccttaat
      301 atcattttgt gactgtaaac aattatttat tagcaaacaa ttgatcccag aagggcaaat
      361 tgtttgagtc agtaatgagc tgagaaaaga cagagcatat ctgtgtattt ggaaaataat
      421 tgtaacgtaa ttgcaatgca tttagacagg catctttttg gacctgtttc tatctttaaa
      481 tgaatttctg aaaacattaa cgaggtttat atgcttttct gacatttaca agttgcttgt
      541 gccaaccggg cactaagaat gatgggtata tagtgtgagt catctctggt ttcttctaaa
      601 aataagttac ttaggacaga agac
//
LOCUS       KCOD01001046             549 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 116529pyr ultra-conserved element
            locus uce-3067, sequence.
ACCESSION   KCOD01001046
VERSION     KCOD01001046.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 549)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 549)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..549
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="116529pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>549
                     /note="ultra-conserved element locus uce-3067"
BASE COUNT          132 a          133 c          132 g          152 t
ORIGIN      
        1 gcctcagtag aagtaattgg ccaaagatta aactgaatgg cagaggcttt gtgtaccaaa
       61 caggggcttg tctttgtctt tacaaagtat ccggcgccgg gtgtcaggga ggacaagttt
      121 tttaatcatg ttaaaatgat ttatttaaac gtcaagccat gtcacctcac ttcctttcat
      181 ttttcaaact gtttgtgttt tttctggatg ataaatttat cttcagacag cctcaatatg
      241 actaattaac tttgaaatat aagaaccaga tgtgtgagct ggagagcttt ctgaactcat
      301 gccaggccct ctcctctccc accgaaattg ctttgcagac actcagggca catgggaaaa
      361 ccagaggggt ggacccctcg cccccctcct gccccagccc aggtgatgtt tgctgcccgg
      421 gacggtcctg ccctggcctg ccggggtgac tctgggtgtg ggaatcaggc tgccactgtt
      481 cctctgccac atggaatcaa ggctggatgt gacacaaagc gatttctttg aaggaaaatc
      541 ctgccgtgt
//
LOCUS       KCOD01001047             558 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 116642pyr ultra-conserved element
            locus uce-866, sequence.
ACCESSION   KCOD01001047
VERSION     KCOD01001047.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 558)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 558)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="116642pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>558
                     /note="ultra-conserved element locus uce-866"
BASE COUNT          156 a          128 c           88 g          186 t
ORIGIN      
        1 cccagcactt cagttgcatg tacacaaaat aaatgttatt aaagaagact gaatgaaaac
       61 tttcattaat ttttctgtct gtgatctaat tccaagttaa aacatctaga atgctaccag
      121 gtttatgtag ccgaaagcag aaccacagtt tgttcacaga cattgcttgc tgtctgcaat
      181 ttttttatcc ctttacaaaa ctttgaaccc tatccagctt tgacacactg cctcttcagt
      241 taataactat caagtttccc cttgtctcct gtctactttt ctttgaggca attgcgcact
      301 cagcaccccg agataataac acacatctat aagataaaag caatggcatt aatgtaattg
      361 tctgcctttc tctctttagc ctaatctttt ttttccttca gttttgactg cctctgtgac
      421 acctgttttt gtctcctctg atcctacgac aggttttccg ctgacaaggt tttgacagag
      481 attctgccag acaagaacat aataaagtat gaagaactgc ttgtcagact ttctgccaat
      541 gctcacatga aatggggg
//
LOCUS       KCOD01001048             655 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 116751pyr ultra-conserved element
            locus uce-2151, sequence.
ACCESSION   KCOD01001048
VERSION     KCOD01001048.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 655)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 655)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..655
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="116751pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>655
                     /note="ultra-conserved element locus uce-2151"
BASE COUNT          192 a          138 c          119 g          206 t
ORIGIN      
        1 tactctacct ctaaaaatat ttcagccctt gatgtgtttt gtgtttcacg atacatcatg
       61 tgttttccca gcgagcagct tgacgtttta atacaattac tgttttgcaa cgtgagccct
      121 tcggatcctg gtacatgcac cacagctgca gatggatttt tttattgact taatactagt
      181 tctaactaga tcctgaagat taagttggtg gagcacatac cactttcaag caggaatggg
      241 aaaaaactag catatcttat tgtacctgaa acactctatg atatgtacta aatattatga
      301 ctactgcgag ccctgcaata attgattcac ccacacagcc atttagtctg tgagctgttc
      361 gttttacaaa ttctacaatc ttttagaaat tctttcagtg aagaagattg ctgcctggcc
      421 tcagattcat tatggtgatt gaatcctctt caatagagaa ctgtttaaag agagcacatc
      481 cctgtgtgtc tcactcagag tgaaggcaca taggttaaaa gcttgtctgg gtggcataat
      541 tcactgctgc tgtgccaaac aatcacatct tattgtgacc ttcataagat acaaaaaggc
      601 aacagtatgg agctagtctt taaccacagc acaattttag ctacccaaca tctga
//
LOCUS       KCOD01001049             591 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 116861pyr ultra-conserved element
            locus uce-1842, sequence.
ACCESSION   KCOD01001049
VERSION     KCOD01001049.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 591)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 591)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..591
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="116861pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>591
                     /note="ultra-conserved element locus uce-1842"
BASE COUNT          179 a          130 c           93 g          189 t
ORIGIN      
        1 agctctgttt gtcccgatta tcccacacaa cgcagccaaa ggtgtaacac aattcggatt
       61 tccccctctg cagctctcct gtgcagagac acagttacca gtctgtcttc agaaggactc
      121 ctaccattct aaaaatactg tcccacagct gtttaaaatt tattttttta gaccatagca
      181 ccactgtttg gttgtttcca atttctaaaa ccacaaatag taaaagtgta ctcagtctac
      241 tgcaaacata aatagcaaat gcacgcttca gcacttttaa aaggatatgg aaattggcaa
      301 caaaaatgca gttcatgttg aaaatttacg agggccctgc catatttctt cagaaataca
      361 atcaggtaaa aattaggaag atctctacca gctgggtggc atttttgtgt tttctttact
      421 tataaactga aagactttca ttatgcaatt tctggcactt gataaaatag agcatggtac
      481 ctttgctcaa accacagctt ctttggttat gtttagcatt acacaaacat ctttcacctt
      541 agatatcctc ttgcattagt gtgtttcatt tcaaataagg cactttacct t
//
LOCUS       KCOD01001050            1064 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 116973pyr ultra-conserved element
            locus uce-200, sequence.
ACCESSION   KCOD01001050
VERSION     KCOD01001050.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 1064)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1064)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1064
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="116973pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1064
                     /note="ultra-conserved element locus uce-200"
BASE COUNT          307 a          221 c          203 g          333 t
ORIGIN      
        1 aaaagattag ttaaaacatc tctaaccccc actctctctg ctttaaatta atgtgattaa
       61 attatgtaca gcgcttaacg ttgtacataa agatgtggcc ccatctcctc ttgttctggt
      121 gctactgtgg gaatttgtta attcagcttt ccaagggcta ttgtgaggat agtcacaatg
      181 tatacacatg ttaaagagaa tatatatatt ttgcacaaag tccttgcact gcattaaaat
      241 atgtaagcaa attctggtgt taagacattt ccacattatg atttattcca ttatcatttt
      301 ttccatctca gaatgcaatt aatatggttg tgtgttaaat gattcagtga aagtaaatct
      361 tttatattca ggtaagcaat tcagccttgt aaggttttat gggaattaga ttttttgaag
      421 tctgtgttga gcatgcccat aactctgaca gagccctgca ggctcttgtc ttcaccttca
      481 aatcataaga cagagaaatc aagctccctc tgtgctctca attataccaa aaaacacgga
      541 gcagaagtct tcagtaattc aatccctgtg gaagcttctt catactgttt gcactgttgg
      601 aactgctgac agcagcaatc ccacaatccc tcctggtagg ctgtcaaagt tcctcgtgcc
      661 gtgtgagcgg cactgctctg tcccaccgct cctcctccag agacctttaa gcacatgcat
      721 gacttttgat gcttgctcga tacagtggcc aagaggccaa aaaacatcac aaggagagtt
      781 ctcatactct tacaaggtgc tttgtactca aactaatagg atctgtggct acatgtgggc
      841 cagggctggt gtaatttaat cacaagtaca gctgcataaa cactgtacta aggaatgtct
      901 gcctgcaatt ggattctttc tttgaaagtg cactgtagaa aattcctgag tgccattttc
      961 catatggtta atgaggaaat gtatcatggc cagcttttaa aagtaatttg aatttatgag
     1021 ttgcggtgat tctaacacat gtgcacaaga aacactgcat accc
//
LOCUS       KCOD01001051             555 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 117083pyr ultra-conserved element
            locus uce-5288, sequence.
ACCESSION   KCOD01001051
VERSION     KCOD01001051.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 555)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 555)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..555
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="117083pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>555
                     /note="ultra-conserved element locus uce-5288"
BASE COUNT          159 a          109 c           95 g          192 t
ORIGIN      
        1 agctaaaatg caagagctct aagtaaatcg ctccttaccc atcatcagtc caggaagaac
       61 actccttgta gcagcgagca gttcaaaaaa attcctaacc cacaaaatga tatagaatgt
      121 gtcgttctcc tgaatgctct tttacagtgt gatcaagagg ctttctttag tgaatacatt
      181 tgctcactca gttttggaga gtcgcccttc atttattctt tccctttgga agtactttcg
      241 agtgcaaatt actgctatca gaagccttga actgagaggc tattattctc catgctcaga
      301 ttaaattaat tttgaacagt ttaatgcagc atgtccgagc tgcaagtcca agtggtgtca
      361 aatctatttc tctgcttttt taagctgcac cttcaagggc agtatgattc atggtaaatg
      421 tgttcttcta atgtcttttg ctaagcatta ttattttctt tgcaagtcat gaggataaaa
      481 tgttaactat tttcctccta aaattatatg aagaatgcac aattttatac cagcctaaga
      541 ttgttatatt tgctt
//
LOCUS       KCOD01001052             441 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 117189pyr ultra-conserved element
            locus uce-5108, sequence.
ACCESSION   KCOD01001052
VERSION     KCOD01001052.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 441)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 441)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..441
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="117189pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>441
                     /note="ultra-conserved element locus uce-5108"
BASE COUNT          167 a           67 c           53 g          154 t
ORIGIN      
        1 gaattaaact ttaacaaata gatcttttaa aaacgaaatt aataaacttc cttatttctc
       61 tgctatcaag ttcatagcct ttacttaatg atgatgcact tgattaaata aaatgaaaga
      121 aaaatggaag ttctttcaga cattaaaatt aataatgagt ttagacttaa tccaaaagca
      181 atttaacttt aaacattcat atgaaattaa atgaaccatt gaatttgcta tataagcaag
      241 cattaatctt atcaatctat gaagactgga atgttataca gtgacccatt aatttcaaag
      301 cctaatacaa ggtctgttta atgcctttag tctattaaaa agtgtgatcc tacaatataa
      361 ctgctttttc ataaacgttt aaaccccaat tcattctgtt actgcgatca tttgataatc
      421 tgtactgaca agattatggt t
//
LOCUS       KCOD01001053             830 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 117297pyr ultra-conserved element
            locus uce-4666, sequence.
ACCESSION   KCOD01001053
VERSION     KCOD01001053.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 830)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 830)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..830
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="117297pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>830
                     /note="ultra-conserved element locus uce-4666"
BASE COUNT          266 a          120 c          164 g          280 t
ORIGIN      
        1 agcactgccg ttggcaaatg ctgtaatgtt tcccctcact attaattgtt ctctgtttac
       61 tttgatgctc aaagattgcc ctgttttaca agcatatttt cttaattgtg tcaccttgta
      121 ctgtaagtgt gtcagagggg aaacatttgc aagtgattag atatggacct ttgtgtcacc
      181 aaatgtatga ggtacatacc cttataggat ataattgtga tcttttaata tgcggccatt
      241 gacccggact tgttattatc tattatagtt tataataatg tatctcttta tgattaaatg
      301 atgatgcctg gcagaacact atgattagca tttcagttat ttatagatta tgtcagagca
      361 gtaataaaca taaaatgctg ttaatgtgtg gctaatgaaa tctggacatg aacaagttta
      421 tgaattgata taattcattt gagtgttcta actgagctgc tggttctcgt cataattcaa
      481 aagcttagca gggttcaccg attaggaggt agactaattt gctacaaaaa gtcaatgggt
      541 tttcatcgtc ttgggctatc atacacagca tggctgattg cataaggact atacaaagta
      601 attctcataa atatatttat taagcttaat atgttttgtg aggttaggat ggaatcagcc
      661 agtgcacaac atatgtggaa caaaatcaca gtgtgttaga tactaaaaag atatgttcag
      721 taaaatcatt caggagcgga tcgatgaggg agttatttga attttaaaaa gtgagcaatt
      781 caatatcaaa tataaatgag agccataaag aatgatacag atgattgact
//
LOCUS       KCOD01001054             690 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 117517pyr ultra-conserved element
            locus uce-1877, sequence.
ACCESSION   KCOD01001054
VERSION     KCOD01001054.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 690)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 690)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..690
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="117517pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>690
                     /note="ultra-conserved element locus uce-1877"
BASE COUNT          208 a          137 c          126 g          219 t
ORIGIN      
        1 acttcgaccc agaagcgatt cgagacttga ttttgcagct ggactacccc tacactcagg
       61 gctcacagga ctcagcactt ttgcagctgt tagagattcg ggatcgtgta aataaactct
      121 ctccacccgg ccaacgtcgt ctggacctct tctcttgctt gctccgccat agactcaaac
      181 tgtctaccag tgaagtggtg aggatccaat ctgctttgca ggcctttaat gccaaattgc
      241 caaacacagt ggattatgac acaaccaaat tatgtagtta accataaatg tgaagcacaa
      301 cacaaaacct tgaaggagtt tttacagtgc ttttgtggaa cagtttatgt ttggaagagt
      361 aaatttaaat tgtcttttca atatctgtct tatatcagtc aatactgttg gatggcaatt
      421 tacacacatg aacttgctga aaatatatta tacctgcagt tttggtttat gaatgaaata
      481 aatactgaca ccagtctaga agacattcta ctttttacaa taaatttcat ttgtaatttt
      541 atatgttccg tggcaatgct tttgtgcatt acatcctcta gagggaacat agaaggagac
      601 caataaaatt ttgtagctga acagttatta caaagaaacg ctgtgggatt cttttttctt
      661 acacaaaagt agtaactttg atacactttt
//
LOCUS       KCOD01001055             642 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 117625pyr ultra-conserved element
            locus uce-6102, sequence.
ACCESSION   KCOD01001055
VERSION     KCOD01001055.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 642)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 642)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..642
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="117625pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>642
                     /note="ultra-conserved element locus uce-6102"
BASE COUNT          220 a          120 c          117 g          185 t
ORIGIN      
        1 agttcagtgc agaaattagt atcaagtgtc agctaactct accttcatat aaagagtgac
       61 atgaagaatt tgactacacc tgcatagaaa gggctcccag aatggtagtg gcccactccc
      121 aacatctgct ccatccattg aacttagctg taaattgaaa ttccattgca atgtttttag
      181 aatcagttga agtaaggaga ctgtcagaaa tcctctttaa actcactctt atccaaacag
      241 gaagctgacc tctaaccccc ggacgtaaca gtacaccagt ggaaatttca ttatccccgt
      301 ctcggctgta ctaagtgaaa attaattgtg taattatctg gatgagcgca tgtgtaaaat
      361 tttacaatgt gccagttaga ttaagtaacg tgttagtggc atggtttagt gcagagtcaa
      421 ggctgtctta taaaaatggc ataagaagtc caacaagatt tgaaggaaaa gaacatatgt
      481 ctgaataaac gctaacatga gaaagtaatg taatatttaa taccataacc tgagtaagat
      541 cttagcctcc tctgatggag atttgtctgg cacagaagag atcttttgtc tatcacttta
      601 aacacacata atttaatcat caaaatatca ttacaatatt aa
//
LOCUS       KCOD01001056             705 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 117733pyr ultra-conserved element
            locus uce-544, sequence.
ACCESSION   KCOD01001056
VERSION     KCOD01001056.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 705)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 705)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..705
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="117733pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>705
                     /note="ultra-conserved element locus uce-544"
BASE COUNT          221 a          102 c          125 g          257 t
ORIGIN      
        1 tttttcaggg actactgtaa taagaagtct aaaatttcat ttaactgaag ttcaagatgt
       61 aaaagataag tactgttcag ttgactaatc aaatagtcat aaaagctctt ttctgaacta
      121 taattacatt tattcagttc tgggtttgat ttatttttta ttttaattgt cagctctgct
      181 acaccatgat gctaatagaa atgttattgc agccaatatg ggctaaaatg atgtctgatg
      241 attattaatg agagcaataa gaaggtatct tcatataaag tcagcattaa aggagtaatt
      301 cattttacct gatataattg gattgtagca tttaaatagc ctgggacttc ctcttaattg
      361 tgattagttg taacttcttc cttttagtac cacatttaac tcttccttca ctactacttc
      421 tgtgtcttct atgaagtaat taaacatgaa ttgctcagtg ccttttagta aatatatcca
      481 aggatttagt agctgttaaa tggaatagct gtttgttaga aatagttatg catggtaccc
      541 ttagctggag atgtgaagct atcacttcac tataatgttt tatatggcac gtcattatac
      601 aaatgcatca attgttgctt tggttgcaag aatcacagca ggtgcctttg tcaggagcaa
      661 ttgtaaagct gaattttatg agaatcaaat gaaaggaggg tactt
//
LOCUS       KCOD01001057             650 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 117842pyr ultra-conserved element
            locus uce-998, sequence.
ACCESSION   KCOD01001057
VERSION     KCOD01001057.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 650)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 650)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="117842pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>650
                     /note="ultra-conserved element locus uce-998"
BASE COUNT          199 a          143 c          112 g          196 t
ORIGIN      
        1 ctattcctga tgtggctctc aaactactcc ccttctattt taattttaaa gtaagttagc
       61 aaacacttcc ttcctaatcc ctagggacta tctgtatggt gacacaaaca cacaaattta
      121 tgacagtaac ataaatactc ctccgaagta atgtgcaaca ttaagtgaaa tcgtttcctg
      181 gaaagatatt ataggtatct atattttatt taaacatatc tgggtcttta tgaccttatt
      241 tttaaaatgt atttcctttt tacatttcct ggtgcaaatg gactgcataa ataagcaatg
      301 tgctatgagg cttcagacta gccgataaac cctttcaatt ttcatgccag cttcttcttt
      361 tgtaattcaa atctggctga aaactggcag ctctgaaaac tgaaacaagc actgccacaa
      421 ataccttgta atgctatcga ccttgtctgc ccatgcagtg agaaaggggg atgcatatgt
      481 gtctgcagtc atccagataa cacaactcat ttttttgggg ggataacaga agctggaccc
      541 ggactgcgca cccaaagcag tcattaccag gcaggctgga gaataagtct cttcaaaata
      601 cacagcgcat ttaaaaacca tatacagggc tcagccactg ctttcattac
//
LOCUS       KCOD01001058             552 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 117949pyr ultra-conserved element
            locus uce-931, sequence.
ACCESSION   KCOD01001058
VERSION     KCOD01001058.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 552)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 552)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..552
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="117949pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>552
                     /note="ultra-conserved element locus uce-931"
BASE COUNT          178 a          106 c           99 g          169 t
ORIGIN      
        1 aacttgaaaa ctatattaat aattaagacc tagatcctga gtgaatccat cccctctttc
       61 tcttaatagt tcactatttg aaatatattt ctggctgaca acaacagaaa aacctcacta
      121 agaataggaa gttgctgcag gaatgaaact ccctttctgg ctaacaggga tatgttttcc
      181 tatgcaaatg cagcaaagcc cagaaattag caatgactgc taaattaaca cacttgaaga
      241 gcttggctgg ttctaatagg cagtcaaatg gtcttgttac attgtaatgg tgccaagcta
      301 attgaagtga ttactgttgc tcatgagcag cccttttgaa gtagaagtct tttaaattat
      361 ccatagacgt taaatgtcag acactattgt gtaattatac tttgtaaacg ctgaatgtca
      421 taaggcatca caggtaattg aggtttacag agaagagctt tatctaaacc taattgggca
      481 tcaactcttt gtcactattt ctaaacctaa ttgggcatca aatttttgtg ccaggggaca
      541 ctccaacacc tc
//
LOCUS       KCOD01001059             531 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 118061pyr ultra-conserved element
            locus uce-7607, sequence.
ACCESSION   KCOD01001059
VERSION     KCOD01001059.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 531)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 531)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..531
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="118061pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>531
                     /note="ultra-conserved element locus uce-7607"
BASE COUNT          156 a          114 c           92 g          169 t
ORIGIN      
        1 tccagaaggc agccctccca ttctgtctca catgccttaa ctgaattcct tgccatttca
       61 taggcattac tgtagatttg ttttacatga tcaggagaca aatatatgtt atgcattaaa
      121 tatcacttaa gcagggaagg agtacagtaa ttttacagac tctggtttct aataaatttt
      181 cacagctacc taaactgcat taccaagttc cagtttattg tcaagcttgt gcacaacatc
      241 cctcagtggc atgtcaaatc tttaccaagg cagctgaact cctaaagctg tcctcattgg
      301 caggaaactt gtcagattaa attgccacct cttgtcaggt aaagatgtat gatttgctat
      361 ctccctgtgg ctgatgacac aaactgccct tccactttgg atgtattatg aatgtccagt
      421 gttccttact atgagaaaag attaagagga aatattccac cactttaagc acagtttatt
      481 ataaatatag acacaggaac acttttgctc agtttcaggg tacttgctta t
//
LOCUS       KCOD01001060             579 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 118167pyr ultra-conserved element
            locus uce-5853, sequence.
ACCESSION   KCOD01001060
VERSION     KCOD01001060.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 579)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 579)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..579
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="118167pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>579
                     /note="ultra-conserved element locus uce-5853"
BASE COUNT          151 a          133 c          107 g          188 t
ORIGIN      
        1 acgagtggca tttcgggagc tgcttcttca gctcactcac atcacccccc tcccttcttc
       61 ctggcacaag ggccctgtga actcctggcc atgggagcca actccatcac cgagggactc
      121 tcctgacgtg ttttcacagc atggaaccca tttcacacca cccctctcct tcaggtttcc
      181 atccccttgg gcctaagtaa cactactgcg gcactgactt caataagtaa ctttttattg
      241 tgtctaatca tgtgcaaatg tgttaaaatt ggtagttttt agcaagcagt tatggaacat
      301 attaccgtaa ggcatttgct catggcgtga caatgattgg ctccatgcca cttaaatgtt
      361 ttatttaata atgtgggaat ttcagtgtgt tttcctttca ttatttttaa cttgaaaaca
      421 gaaacagaaa gccccttctt taaagttaaa actttaccgc ctagagtctg tcaaaagcaa
      481 tataagcatc tggattttaa aaagggagct tttgcaggat gttaatttaa tatactggca
      541 tatttcatgc atacttttta tattttgtat gcttggagc
//
LOCUS       KCOD01001061             650 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 118280pyr ultra-conserved element
            locus uce-1713, sequence.
ACCESSION   KCOD01001061
VERSION     KCOD01001061.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 650)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 650)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="118280pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>650
                     /note="ultra-conserved element locus uce-1713"
BASE COUNT          178 a          126 c          136 g          210 t
ORIGIN      
        1 cacaaaaacc atccagcgtc cttgtcagaa aaaatcagct tgagttgcag ctgacagaat
       61 gcagagcttg cagtgcacct agtgctgtta gcagctatag aagcctcctg caggaagaaa
      121 atgtatttct tctggggtgg cacttaaaat ttataaaagt gtgatgtgga gttctcatta
      181 gagcttcagt ggttatcagt aacccataag ccttgttttg ctggctgctt actggtgcat
      241 ttaataaaat aaagatcact cagtggtgcc gtgggcagca tgcaaggtga tagccatatt
      301 tgcttactgt aaatacaaga gaaaatcaca cacaaaccgg ctgtagtttt gacaagtatt
      361 aagatcgctc tttacatctg tacttctgta ccaaagtgca attagttttc ctcgcacaag
      421 gatttctgtt tatcttattc tgcttgatta cttgagcata atcgcactgt ttgcttcatt
      481 gctcctggta gtaagctcca gtttaaaaag gggaggatga gtgtgtgtaa atatacagaa
      541 ttctgctgta agactctaat ttatgcatct ggatgacagc gttttcttct cttttactct
      601 ttctttccac aaggtttggt tcatgtacat cagattcctc ggcttaatag
//
LOCUS       KCOD01001062             691 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 118388pyr ultra-conserved element
            locus uce-2811, sequence.
ACCESSION   KCOD01001062
VERSION     KCOD01001062.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 691)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 691)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..691
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="118388pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>691
                     /note="ultra-conserved element locus uce-2811"
BASE COUNT          218 a          150 c          127 g          196 t
ORIGIN      
        1 tgattagttc ttgtggcttc ccgaagaatt caaacacctt tatcattcaa atatcaataa
       61 ctgcttttta atgttgcttc tttacacaag ctgaatgatc ttttgatgct gctagatggt
      121 gcatattcct tcaacatata cagaatggca ggactgaggg cctcagatag cttagactaa
      181 acatcagctg ttccttcaat cactgcttct gccaatcctt gtgcctggta tttattcttg
      241 ttttgtgttt accctacagg gctctatgaa aactatccaa ccaatgcaga accagaatgc
      301 tgtgatgtca gatggggact attatcagat catcaaccca aagggactat aaaaacaagt
      361 ggctcaacaa cgtgtcacag gacatctctc acagtttcat cagcatcaag actgtgtaac
      421 agcagactta aactgtgtgt tcttgtatta attctcttac atacagtact tacagtctca
      481 gcagcacaga actcaacagg actgggcttt ggaggcataa caactttgga agataattca
      541 gccaatgagg aataaaagaa aggattcatc ttacatgaca gaaacacaac aggcccaaat
      601 tactacagtc aaaaaggact gagtgcttta ccctcagatc tcttcttgaa tgactttggg
      661 taaaatgaaa agaatgggcc gctacccaaa c
//
LOCUS       KCOD01001063             406 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 118496pyr ultra-conserved element
            locus uce-297, sequence.
ACCESSION   KCOD01001063
VERSION     KCOD01001063.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 406)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 406)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..406
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="118496pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>406
                     /note="ultra-conserved element locus uce-297"
BASE COUNT          114 a           57 c           71 g          164 t
ORIGIN      
        1 gctttacttt acataatttg ctgattatat ttaaaagaaa tacaattttg caattactgt
       61 tctttctggt gtgctatcta tgcatcattt tctttttatg tttatatatt tctccttcat
      121 tagtgcagtc tgaagggtga ttagatccct tcaaacattt tacagaggtt aaacgttgat
      181 taagatttaa ttattactgt aaatagcttg gaatgacata tggtgcaaaa acctgacata
      241 tgtgcatttg aataaatgaa gtgctatttc ccatgatgct tcagtagctg tttaacagct
      301 ttgctgaagg gttatgttgc acctcatgtt aagattgctt tgatgttata ttttgttggg
      361 tttttgcagc tgaaagctaa gaacagtttt tccagttttt aaaaac
//
LOCUS       KCOD01001064             875 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 118606pyr ultra-conserved element
            locus uce-1813, sequence.
ACCESSION   KCOD01001064
VERSION     KCOD01001064.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 875)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 875)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..875
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="118606pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>875
                     /note="ultra-conserved element locus uce-1813"
BASE COUNT          249 a          184 c          215 g          227 t
ORIGIN      
        1 atgtgaagga attaatgaac taaataacag ggaaaccttt ctgttcagaa gaacgggtat
       61 ccatatagcc acattctctt tcagctaacc tttgtgtgag agaaacttct gctgatgtca
      121 aaggacctgg aggacattag cagctgatac tggtgcctgt caggtgctgt tgggtttgtc
      181 tccccaccac caggctggct tccctcacta ctgccagtga ccttgcaaac ggctccgaca
      241 aaggtcggaa tggattcatt gatcagccag gccaagcata tgacagtctg tgccttaatt
      301 gaatcccaaa agggggcaga ctgggttttt attacagagg ccagacgata gcactcatta
      361 aaagctccac agactgtgtg gtttactaat tagtttatta tacagacacc ttgacgatgg
      421 gcaaagttgt cattttgccc tttatcgcac aggggatgtt gttaaaagtt taatcagcta
      481 acactgacca acttagcttg gcaggctgtg gacagtcatt accgaggtca cccctgctgt
      541 agcaattctg acagggtcac agcatgaatc tccaataaaa agcacgttac ataaggtaag
      601 agtgcacctg aaagggaacc aggaaaagag atgtgctcag cggggagtag gaaacagatg
      661 gactgttagg acaagtgaag cctgttacgg tttctctttg cttacattgt ttaacatatg
      721 ctttttggaa atatggggag ctctgagcta ttgctgtgat atgttcatta gaacacaaga
      781 tagcctgaac caagcggtgt gtgaacaggc actaagtgtc tctgctctgg caaaagcagg
      841 gatgatttcg ctagttaagc aaagccgagc accca
//
LOCUS       KCOD01001065             532 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 118715pyr ultra-conserved element
            locus uce-5908, sequence.
ACCESSION   KCOD01001065
VERSION     KCOD01001065.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 532)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 532)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="118715pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>532
                     /note="ultra-conserved element locus uce-5908"
BASE COUNT          188 a           94 c           94 g          156 t
ORIGIN      
        1 gggcagatta agctctgtga acctcacagc tgaaacctca caacactggc aattttcagt
       61 gattaaagta atttacttta tctataaaat gtaaagatat ctcataatag ccatacagca
      121 agtacaggga ggtgtagttt tcctggagat aatcagacct ctggggataa agggtcctgg
      181 ctgcacctca tgcattgcaa gacccagagg gctttattat ctgatgatta ccacaccccc
      241 atttccatgt ctttttgctt aattaatcac agtaacatta ttgcccaact tcagacaaca
      301 aaaataatga gagaggcttt aaaagattca aagactagag caaaaacaag agatcccata
      361 ggaaagtacc catagtgaaa ctggggttta caaatcactg aaatctatta aaaatgatgc
      421 ttacgttttg taaagtgcct tctttaatat aaatataatt acgttttaaa tattgtaaat
      481 gtgtatatac aatataaaac atatacttgt tttgatcaga ggagacgagg tt
//
LOCUS       KCOD01001066             780 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 118823pyr ultra-conserved element
            locus uce-2700, sequence.
ACCESSION   KCOD01001066
VERSION     KCOD01001066.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 780)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 780)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..780
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="118823pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>780
                     /note="ultra-conserved element locus uce-2700"
BASE COUNT          250 a          139 c          169 g          222 t
ORIGIN      
        1 gaatctggta agcatataaa caaccactgt aacagcagca tcccccataa acctcatctg
       61 gggccaggct aggggttaga gtgcattcac tgctgccaca agcatatttt cacaaaagaa
      121 gccaaagagg cccatttcat gcttccacct aactggtcta ggaagaaatt aatgtagtgc
      181 agaactcagt gaaatacttg ggtctgggtg ggctggatta tgatttaatt ttcaagctat
      241 tgggttctaa gcctgcacag tcttaagctt gcagctattg gcatgtttga cattttaaac
      301 tatgaaatac caacctattt tgaaattgtc caaatcatta gttgtggaat tttcctagca
      361 cttcatgaat accactgtta attgggcaat taactcgaaa ctacagaata tgctgtgatg
      421 gcatgatatg atataagcca tgtaaaagaa ggaacagcca agcaactcag tatgttgaaa
      481 gatattaatg aagtggcaaa atctgccaga aaaataataa tgggtgattt taactacccc
      541 aatattaact ggttgaataa cacatctgta catggtttgg agaagcagct tattgatact
      601 ataaatggct tctttttgga gcagctcctt ctggagcaca gaggaggagg agttccactc
      661 agttaataat ttgtgtgtgt ttgtgtagaa agcaagcatg ggtgttctgc taagcaacaa
      721 tggccatggg acaatgagtt tgaatctatg atgaagcatt tcaagtggca accaaatagt
//
LOCUS       KCOD01001067             618 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 119041pyr ultra-conserved element
            locus uce-7184, sequence.
ACCESSION   KCOD01001067
VERSION     KCOD01001067.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 618)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 618)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="119041pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>618
                     /note="ultra-conserved element locus uce-7184"
BASE COUNT          173 a          102 c          129 g          214 t
ORIGIN      
        1 tgaaactgtt ggttgacctt aggtatgcag aggaacacaa aatgcatcat taaaatgctc
       61 agtcttagat ttcattaatt ttatgactgt aaaattgtca cctatgtttc caaatgaaat
      121 gctctaacaa ggaagacagg tttatgtggt aaggctttgt agttcttcag ttcagccacg
      181 cttgaagctt tttcactctt cctttaggca aatcccttag aagcagaatg tttcaatttt
      241 acacattttg tgtcaatttt ccagacagaa aagtagcccc tagacattag acatttagct
      301 acggaaaggc agtttcctta gttttatttg attactagaa gttagattcc tgctgatagt
      361 tcaggactgt tagtggttac ctgactattt gacagaaaac atttcctctc ctttgtttaa
      421 cctttgactc atgaatgtaa aagttttatc agagctgtag tagaagcacc ggtgaggtgg
      481 aagtctactt atggcaacaa gggttgtgcg tgactttgaa tgaaagtctg agttgtggct
      541 catttggatt aagagaaaat gctaagtatg tttttaattc ttggtctctt gcttttgtga
      601 cagacagggg ctgtactt
//
LOCUS       KCOD01001068             582 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 119149pyr ultra-conserved element
            locus uce-4850, sequence.
ACCESSION   KCOD01001068
VERSION     KCOD01001068.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 582)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="119149pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>582
                     /note="ultra-conserved element locus uce-4850"
BASE COUNT          202 a           94 c           96 g          190 t
ORIGIN      
        1 aacttaagga taaaaactaa ctagtcaaag cagaacactg tttacagtga aaaaaaaaca
       61 ggtagaactt gcattttaaa caaactatca gtgtaagaaa aacagcttat aacatatgtg
      121 caaccaagag cttttcacaa tattttcttc aaactcttta aaattatttt ttaatgacaa
      181 ttatatttca gttggacaca aatgtattta ttttacccta gcaatagaac aaaatataat
      241 ttctttagcc attttttcat gagaacggtt cattgtacag ttgaggaaat atatgaaata
      301 aggcctgtgg cttgattgct agtggttaga catgtattca atctttgccc taatggaaaa
      361 gatttgcagt gaactgcaaa ctgatgcaga atatctctcc tgcttttgca agtcttgtca
      421 ggaacagtaa ggtacagtaa atttgtccca caggatttta aagcctacgc cttgtatata
      481 atacaatgta ggcctaggtg gtgcagccat atttacaaat ttacttcaca aactgctgca
      541 gtaaaatggc tggaaagtgt ttatttctct tttgttaaat tc
//
LOCUS       KCOD01001069             370 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 119258pyr ultra-conserved element
            locus uce-7310, sequence.
ACCESSION   KCOD01001069
VERSION     KCOD01001069.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 370)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 370)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..370
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="119258pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>370
                     /note="ultra-conserved element locus uce-7310"
BASE COUNT           92 a           84 c           88 g          106 t
ORIGIN      
        1 gtcagctgca gcgcacagcc catttttatt tatttgtagt tcttgacacc caccacctcc
       61 ctgccagcct ggtgtggctg atcaagctgt tcaaacaact ggaagacatc agaagttaaa
      121 cactcattat tttaatttga tgctaatcat gtgttaatga gactaatcct tgcaatgatt
      181 caggtaattt gcttaatggc tgcccggagt acagattaca gcaatcagtc acatctgata
      241 agatgtctgt tgtggaggag cctgtcaggt gaatgaggtg ggaagatctg ataagtcagg
      301 agccttcttg ccctctgcac atggtcctct cctgcctgga gaggactcac acgaggtcgt
      361 ttgggccatg
//
LOCUS       KCOD01001070             494 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 119474pyr ultra-conserved element
            locus uce-5963, sequence.
ACCESSION   KCOD01001070
VERSION     KCOD01001070.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 494)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 494)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..494
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="119474pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>494
                     /note="ultra-conserved element locus uce-5963"
BASE COUNT          130 a          110 c           87 g          167 t
ORIGIN      
        1 atgctccctg gggccaacag gggagggaga gaaacttcca gggtgaatca gtgagatgtg
       61 ccctatggag tatgcacaga ttgactttac agcacttgaa ctccatgaat gcaaatcatc
      121 tccatgaagg aaagagcatg taaaactgcc cttgcccttt ctccttcttt cctttcactt
      181 tatcctgtca gcaccacata tatcaaactg gagctctggg ttttaactag gctttactgt
      241 ttcattctgc ttcatgaatt tttcagtgtt tacacttatg cttaatataa taagattgat
      301 aatgcagctg cctgatagat tctcatccag gcttctcagc aagagagatt cttattcttt
      361 cttcctaatt tctgtaatat ccaaaagttc attttcacct tttgcatctt gatgctgttt
      421 ttcatctttc acatattcat cttctgaaac aatgtcttca aggtaacaac acccagcgga
      481 tttatatgac tggg
//
LOCUS       KCOD01001071             580 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 119583pyr ultra-conserved element
            locus uce-258, sequence.
ACCESSION   KCOD01001071
VERSION     KCOD01001071.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 580)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 580)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..580
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="119583pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>580
                     /note="ultra-conserved element locus uce-258"
BASE COUNT          184 a          117 c           97 g          182 t
ORIGIN      
        1 gctgggtgct gggaaggcta acagttagca gtagggacat ggccctactg accacattta
       61 atcaaccctt ctgtaaacaa ttcaacattt tcattgttct ctaaaaacta ataaagagaa
      121 acacgcactt ttcattcatc ttgaagtaat tttctgtcag gtttgagccc cttgtggctt
      181 acagcttgtg cattgctagc tatgtgatac aacaactatt tcaatttatt ttacaaactc
      241 tggccattca catgtcagtt agtgttcacc aagccggcat ctgaaattgt gcagttaacg
      301 agttttacaa catttctatc aagagaaact gtttagcata actgactctt aaggagttat
      361 tatacctcta aaaatccatt ttaaggggca ttatttaaat aaaatagaaa aacggttcac
      421 tgccttttaa aggggctaca aaaaaagtcc atcagatcca gtgcagtaat cctcagctta
      481 aagcactctt gagagcactt ctgggaatta tcaccataat gaaatgtttt gtgaaatgtc
      541 cagatagatt cctctactca acaattttac tgcactatat
//
LOCUS       KCOD01001072             545 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 119690pyr ultra-conserved element
            locus uce-2600, sequence.
ACCESSION   KCOD01001072
VERSION     KCOD01001072.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 545)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 545)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..545
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="119690pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>545
                     /note="ultra-conserved element locus uce-2600"
BASE COUNT          147 a          138 c          116 g          144 t
ORIGIN      
        1 ctgtctgaac tttgtctcgc gtatgaaggg ccttcagaga gctcaggaca tgtttgtggc
       61 aggggaaatt ttctgtccag gcagccattc taccaggcag catcagctgc ccgaggcaca
      121 ctgccttcac actcttttgc tccacagctt tagcttattc cttttctcag aagagctcct
      181 tctaatgtct acacaccagc aaacaaaaca gatggggtgg tggaaaatga ataattagcc
      241 tctgcaccac tgagttcaag ctaatactct gaaccaggta tgacatcaaa tcatttccag
      301 tgggacaaca aatgtcatga tggagatgag aatttttcag atgcctcttg tcagaagcaa
      361 acacgagaaa ggttttaact cttccagtag tctgcaagtc ccaaaggttg tgttcgttgg
      421 ctacaagatg gaaatctctt cttttctcag cgtagcaatg gccgccacca gcacaagtaa
      481 tccctcaggg cccagctttt ctacctcagg cctaaagact tctaacacag ccttggcatg
      541 catag
//
LOCUS       KCOD01001073             587 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 119799pyr ultra-conserved element
            locus uce-6447, sequence.
ACCESSION   KCOD01001073
VERSION     KCOD01001073.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 587)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 587)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..587
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="119799pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>587
                     /note="ultra-conserved element locus uce-6447"
BASE COUNT          197 a          111 c          111 g          168 t
ORIGIN      
        1 atacctggaa ggagattcct gtcaccaagc tggtaaaaag gacacattta taatcttctt
       61 tatatgcaag ataatttagc attacagatt tccagtcaaa agggatgtca atgttgtgaa
      121 actgacaccc tatttttgca accattctct gtgttgaaga agttcctcta tctggagcca
      181 tttattgagc aaacacacat gatctaatag gacatcatct gatcaaagtt gggtacctga
      241 ctttggagta tgagaatcat aaacttgctt acggtctatc tggtctgcaa acacttcccc
      301 atagatcatc cagtaaggca tgtaaaaaat gtttttcgcc agcttccacg aaggctcctc
      361 attggggaaa agaattgcct gtcttgccac accaaagctc atcagaacca ccaacatgat
      421 gatgacaaag tacatcatgt ctatcatctg aatgtaatga caggaaaagg gagagaagag
      481 agagaaagga caagaattag aggaacttgt ttgtccatat tctttattat atgctgtctg
      541 tgaatcttag aaacagaatt tttaaaaaca aattttgaaa agccatt
//
LOCUS       KCOD01001074             865 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 119907pyr ultra-conserved element
            locus uce-1456, sequence.
ACCESSION   KCOD01001074
VERSION     KCOD01001074.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 865)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 865)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..865
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="119907pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>865
                     /note="ultra-conserved element locus uce-1456"
BASE COUNT          274 a          122 c          179 g          290 t
ORIGIN      
        1 ctatagtaga gatggaaaga gttaaatgaa tcaggtcaga atgctaaaac tgatattcct
       61 gcatctcaac ataccacatt aaaaagtagt ttggggtgcc tggcatcatc acgactagta
      121 atatacgtaa tatcagcagt attcaagatc attcaggatt gaagtgcaat aaataaataa
      181 atatgcatta tgtgtctttg tgcatattag agatacataa taggcagtat atgttgaaat
      241 ccatgtttca catcaaacct ctatagcatg cttcatgagg gagacaagac ccatgtgttt
      301 tgcagaagct tttaaagctg tttcatttat tttattagcc tttaatgaat gtaattagaa
      361 cccaagtaat taaatgcaat tgtgctcagt atgttcctgt tgtaaattgc cctaaacaat
      421 gtgcatggtg tgaacaaatt tgtgggatta atagaggata gataatgttt ttggatagta
      481 tttcacacta aacggccgca gagagaaaca aagaagctgg cgcagtgtca ttaatcttag
      541 tcaactggca gttctggtgt aatttgcatg acttaggcag tgacacaaga tggggctagc
      601 ttgggatggg tgttagatca ctaggatata tatgtattta tttctcttta gtactctgat
      661 ttataagtag aaagaagttt gttttaagaa accgattcat tctggtttca tctttgtctt
      721 agattaatag aattactggc agtatattgt atgtgttcct ttgtttttat agttagcata
      781 ttggtttatg gatattaaaa aacatctgtg catccttatc accacagaag aaaagcagat
      841 gtgctgtgat tggatagtgt gttgc
//
LOCUS       KCOD01001075             746 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 120018pyr ultra-conserved element
            locus uce-5422, sequence.
ACCESSION   KCOD01001075
VERSION     KCOD01001075.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 746)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 746)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..746
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="120018pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>746
                     /note="ultra-conserved element locus uce-5422"
BASE COUNT          242 a          148 c          126 g          230 t
ORIGIN      
        1 aagaggaaaa ttatgtcttg aaatatgact gggtgattat atttagactc tgaaagatcc
       61 actgaagaat catctgtttt gctaagtaaa ctcctgacac tggatgtaca gtattcgtct
      121 gcaacctagc aaatcactgc agtgtaggat tatgaatgtg cattaaatta aatattgtta
      181 cagagttttt ctcccacctt aggatgcact caacactttc ctccttcctg tctgacaata
      241 tgttgccatg ctataaaagc cctaatgccc atttcaacga ttagctgtac atcagcatta
      301 ctacttcaaa tccacaagtt tcgcatcaag cattaaatgg gatgaatatt gatctgctaa
      361 agaggattta tttatttcta gctctatcca aagatcaact actagcagct tttggtggat
      421 ctgttgagct ctcacagcac aaagctactg catacatgac accggacttg acatttcagt
      481 tctggaagaa aaccaaacag taaattcact gcaataatcc tagataaatg agatgatcac
      541 tggaaaagct gagatagtta agtggtctat cagaaaagtc caaaggatga tattgaattg
      601 ttgctacgta gtaacctctc tacatggcac aagatcacct gccaatatct ttgccttgat
      661 tatcttggaa cacttcacaa ttatgttctg agctgaaaat tttatcctca gagtataatc
      721 agatacatat caatatcaca atgttt
//
LOCUS       KCOD01001076             700 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 120129pyr ultra-conserved element
            locus uce-7617, sequence.
ACCESSION   KCOD01001076
VERSION     KCOD01001076.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 700)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 700)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..700
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="120129pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>700
                     /note="ultra-conserved element locus uce-7617"
BASE COUNT          238 a          125 c          119 g          218 t
ORIGIN      
        1 atagagcaga gtatactgaa taaagaatta cgcacgcgtc cacaaagttg tcttcttagc
       61 caattggggt ttcatctccc atgctcctaa gtcaattata attaacatct ggagtctctt
      121 taaggcaagc attgtttgta ccaacattac ttaattttct ggttagcttg tgcttaaaca
      181 gtccacagag gaccaataca gcaaggaaga gtttatttct cgtaaagtaa ctagagtctt
      241 gttatcctaa agtgctatca gttaatttat gactatcaga gtgggtcaga ctctaatcaa
      301 attgtagaaa catttccaaa gtgattattc aatcaaatga ctaacatggt taattaggag
      361 ccataaacat tgctctgaag ttcatcaaag taatgacttg cccagaaaaa ttactgctaa
      421 ttaaattgcc tgctgctttc atttctacct tatctaataa aaagtccaac caatgaaatt
      481 tagtattgca gttttaaatt gtactaaatg cttgactaag acccagaagt atttttacag
      541 gctaagtgga gctacttcaa aagaaaacat tttagtgtag aaattacaga gcaattacat
      601 gttttcttct ccttaaacca ttgtttcaag acaacaagta agacagaagc aggcatgaaa
      661 tacttccagg gcaagatcca agtgtttaag gtgactgatt
//
LOCUS       KCOD01001077             571 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 120347pyr ultra-conserved element
            locus uce-5072, sequence.
ACCESSION   KCOD01001077
VERSION     KCOD01001077.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 571)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 571)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="120347pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>571
                     /note="ultra-conserved element locus uce-5072"
BASE COUNT          170 a          102 c           91 g          208 t
ORIGIN      
        1 gcactgtaag tacttcacac atctcctttt aagtaggata tattgaacat ttcacaaaat
       61 gacctgcaga cctttgtgat tttagatatg ttccatgtgt acttaaaaga caatatctac
      121 atactcttct aatatatggt tttagtctga agtacaaaag tctgatttat ataagaccta
      181 ctcagataca ttaagtcagg ttaattattt ttcttatcag gggatgagag ttctttaact
      241 ctcccaagtt catttttgtg ccttctaacc taaaaagaat tcttaagggc tattataaga
      301 tctttattat tcacttgtgg cttattccat tggagctact tgaaagaaat caagggtccc
      361 taataatagc tgctatccta acctggtaat aggtagattc atctttgtta gagtggtttg
      421 ggagtgcaca ctgtaatatc tctgatttgg agcagctctt cagactgtca ataacataca
      481 actcaaaata gcagtttttt aattaaaggt tttaagctgc tgctcacatt aacatttttt
      541 ttccccttat gcctgcttag actgcttaat a
//
LOCUS       KCOD01001078             555 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 120455pyr ultra-conserved element
            locus uce-3637, sequence.
ACCESSION   KCOD01001078
VERSION     KCOD01001078.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 555)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 555)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..555
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="120455pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>555
                     /note="ultra-conserved element locus uce-3637"
BASE COUNT          203 a           84 c          107 g          161 t
ORIGIN      
        1 aaaatttatc ataggatagt gctaatgcat ttatatgcaa tgagagtcag tttaattata
       61 gtacatttaa gatttgccaa gggcaataaa ctttgtaaca acatacgaaa gtttaataag
      121 catgaaacat aagaacaatg tagactaaac cttcctcgca tccgaaaagc tgaaatgcaa
      181 agaagttttt atttattgcc tcaggtagaa aagtctgtag aaacagataa gtgatgacaa
      241 agctttgatg ttaataaacc caaatggaag taaaaatcaa agtgtgtaaa tggctaggtt
      301 ataaaaagaa agatgacaga gttataccct gtaattaggt gtaatttgtg cttttggtgc
      361 agctatttgt cctgcatgaa tgagaggctg tccttgtccc tgtataatag aactgcaggg
      421 cacagcccac ttaaaacctc cctaggacaa taagtatttg atgggagcac tgtagccagt
      481 ttgcctttcc tagtacttga aaataatcat aagctgagtg tttataaaac actagaaacc
      541 aagaaattat tttag
//
LOCUS       KCOD01001079             772 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 120566pyr ultra-conserved element
            locus uce-6642, sequence.
ACCESSION   KCOD01001079
VERSION     KCOD01001079.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 772)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 772)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..772
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="120566pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>772
                     /note="ultra-conserved element locus uce-6642"
BASE COUNT          218 a          232 c          146 g          176 t
ORIGIN      
        1 aggatgaacc agttttctca aggccaagaa ggcctcaatc agggaaaccc tttcattgcc
       61 acctcaggac ctggccactt gtctcatgtg ccccagcaga atcccagtat ggcaccttct
      121 ttgcgacact cagtccagca atttcaccac catccccccg ctgctctcca tggggaatca
      181 gtagcccaca gtcccagatt ctcccctaat cctccccagc agggtgctgt taggccgcaa
      241 acacttaatt ttagttctcg gagccagacg gtaccctcac ctactataaa caactcaggg
      301 cagtattctc gatatcctta cagtaacctt aatcagggat tagttaataa tacagggatg
      361 aatcagaatt taggccttac aaataacact ccaatgaatc agtctgtacc aagataccca
      421 aatgctgtcg gatttccatc aaacagtggt caaggactaa tgcaccagca gcccatccac
      481 cctagtggct ctcttaacca aatgaacacg caaactatgc acccttcaca gcctcaggga
      541 acttatgcct ctccacctcc catgtcacct atgaaagcaa tgagtaatcc agcaggtaca
      601 cctcctccac aggttagacc tggtagtgct ggaataccaa tggaagttgg cagttaccca
      661 aatatacccc atcctcagcc gtcacaccag ccccctggtg ccatgggaat tggacaaagg
      721 aatatgggcc ccagaaacat gcaacagaat cgtccattta tgggtatgtc tt
//
LOCUS       KCOD01001080             979 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 120678pyr ultra-conserved element
            locus uce-353, sequence.
ACCESSION   KCOD01001080
VERSION     KCOD01001080.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 979)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 979)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..979
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="120678pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>979
                     /note="ultra-conserved element locus uce-353"
BASE COUNT          261 a          186 c          216 g          316 t
ORIGIN      
        1 ttgggagctc gagcacaggt gagtggacag cattttaagt actaggttta ttcagtgttc
       61 tctaagcagg gttagataat atgtatttac aaagccccat tctctgtact gcccactttg
      121 gtaacatcga tgccattgaa cgtattagca gcagtgaggg gtggctgtaa attttgcctc
      181 gtgtagacaa ggcttacaag gtaagcagca gacccccagc tgcaactgct tgcctgggaa
      241 tggaaccttt tatttgctgt catagtgatg acttttaatt gtcccaataa acaagctttt
      301 aaaaagcttc taaaatgttc tctaataaca cactttggtc tttagccata gaaatgcaga
      361 aataattaga agtgccattg tgtacagtgc cttctggact gggctgaagg tgaaggagaa
      421 agtatcatgc tatccttgtc agctgcaagg gtaattactg ctggctgaaa ttactcaaca
      481 tttgtttata agctccccag agcatgctgt aaatagattg tctgttatag tccaatcaca
      541 ttaaaacgct gctccttgca aactgctacc tcctgttttc tgtaagctag acagagaaag
      601 cctgctgctc acttattgag caccaagcac tgaagagcta tgtttaatat gattgttttc
      661 attagctctt ctccgtctga tattacattt atagtttgct gggcttgaag actggcgtgt
      721 tgcattgctt tcatttgctg tagtaagagt gaatagcttt atttctggag gctgtatgca
      781 acagttgatg ggaattttgg aacagcaaaa atgggggaat atctacagac aacttgttct
      841 cctcttgggc aatgtttttc tatttgcctt ctaaatgctc tgctccggtt ccagcagtgg
      901 tcgtttgcct aaattgtcct ttgaaggacg agaagtattt tcataaaagg ttagaaagga
      961 tgtattttcc ttagcactg
//
LOCUS       KCOD01001081             445 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 120787pyr ultra-conserved element
            locus uce-3249, sequence.
ACCESSION   KCOD01001081
VERSION     KCOD01001081.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 445)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 445)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..445
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="120787pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>445
                     /note="ultra-conserved element locus uce-3249"
BASE COUNT          152 a           86 c           73 g          134 t
ORIGIN      
        1 cctgaataca cttgtcatat gtaagcacaa acatggatga aaatatttcc aaagaggaag
       61 gaacacatgc tcagatatta tctaaaaaaa tgcattgaaa ttcctctgtg atgaatagac
      121 tctctcctca gggtgacctc taccttcaga atatgatggt tttattatga ttaataaatt
      181 tcatttccac agaggaaagg aacagtgtca gcttaaactt aaagcaagtg ggtttctttt
      241 taaatgctaa tttttaaaca cgcccttgca tgacaccaaa tttagaagct cagaaggtta
      301 gcagaataga ttctgatttc caggctgaaa atagtaagaa ggatttaaac tatattgtca
      361 ccctgcaaat cagtaagctg cttcagccac acacacactg cttcatttac tcactgttaa
      421 cttctcatta caattagcgg cattt
//
LOCUS       KCOD01001082             652 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 120896pyr ultra-conserved element
            locus uce-5901, sequence.
ACCESSION   KCOD01001082
VERSION     KCOD01001082.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 652)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 652)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..652
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="120896pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>652
                     /note="ultra-conserved element locus uce-5901"
BASE COUNT          216 a          129 c           94 g          213 t
ORIGIN      
        1 ctgaaattgt gatacaagat tgcattcact tttaccttac cctaagcaat acaactgtaa
       61 aggaatatat actatgcact atcatattat aatctattta aaagaactgg cacagctaca
      121 ataaaaatca tccttttttg tagcttgttc tttgtaaatt acccaaatgc tagagttgag
      181 gagagccttt ggttttttca cgttggcact gtaaaccccc tcttgttcga gacacacata
      241 tccctcaact tctgtcaaaa gcaagaacaa atttcctaac caaaactgaa aagtccttgg
      301 cttttcaaat gactataaat tgcatggcta agtgcatatg gccacagggc tgtcacagtt
      361 acttttcctg acaattcatc atagcatact aattctgtaa tatcattact gtgtctcttc
      421 tcactgtact gatccagcca gttaatttaa tcaactaata atagattcag aaatggatgc
      481 aaagggccct agcacttcaa attatattac tagagatgca cagcagtgaa aacaatgtat
      541 tctatacttt ccattaaata taaccccagt aagttatatt cttttgttga agattttcct
      601 ctaaaaggga aagtattttt acacatttag aaaaggtgca gtttatttca ca
//
LOCUS       KCOD01001083             615 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 121006pyr ultra-conserved element
            locus uce-6087, sequence.
ACCESSION   KCOD01001083
VERSION     KCOD01001083.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 615)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 615)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="121006pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>615
                     /note="ultra-conserved element locus uce-6087"
BASE COUNT          181 a           85 c          115 g          234 t
ORIGIN      
        1 acagaagtct tgtgtaatat gggtataatt tttaattgtt tgcattattt tcaaagttca
       61 aattatcact ttgagattac tataaataca cttaaaatta tctattttaa attaagaaaa
      121 tattagagat attttcatgg gttcaatgac ctttcatttt ataagcaatg ggcatggtac
      181 agagtggctg tcatgtaagg tacttgaaga ttcttagttt aattctattt ttgcaataac
      241 cttgactttt ttttttgagt tgtgcatgta atgagtccag taaatgctga aaatggggaa
      301 gagtaaagta tttatctaaa ataaaagcta ttggggaggg gaaacaatga atgtatccat
      361 ctgtacatga tttacatgct gtggatgcct tgtaaacatt ttcctatttg tttaaactgt
      421 gtttcagcga ggatgtaatt gcccttgtgt gtagttttaa gctaatgaca gtcatcaact
      481 ggttttgtgt gaaattaaat tcatggtatt tttctgtaac tttatcccca tggtgagtct
      541 gtacaaacca cacgctcttt catactgatg ccgaaggcca gcttttccag tcattttgat
      601 tcactgtgta tctga
//
LOCUS       KCOD01001084             268 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 121110pyr ultra-conserved element
            locus uce-6330, sequence.
ACCESSION   KCOD01001084
VERSION     KCOD01001084.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 268)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 268)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..268
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="121110pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>268
                     /note="ultra-conserved element locus uce-6330"
BASE COUNT           94 a           52 c           43 g           79 t
ORIGIN      
        1 gggacacagc atgagaactt atggtatagt tatctgaaaa acttacccac tccctataac
       61 atgtttagat tgctttttta gactctataa aattttagca agcactaaac atagaacttc
      121 attcatcatc atgcaagcaa aggctgccaa aggaagccta ctcttcctga gctaaaagtg
      181 gcaacactcc agtattggca gaaatcaaat gaatcatttc ctgcttttag ttttagataa
      241 ataatcaaaa aagattgtct agagtctg
//
LOCUS       KCOD01001085             750 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 121219pyr ultra-conserved element
            locus uce-2518, sequence.
ACCESSION   KCOD01001085
VERSION     KCOD01001085.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 750)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 750)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..750
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="121219pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>750
                     /note="ultra-conserved element locus uce-2518"
BASE COUNT          123 a          217 c          255 g          155 t
ORIGIN      
        1 ccccagtgca taatgtgggc ttctacctct tctgcaggga aggatgctgt gggaaggtgt
       61 ggccccagca ggcgtgacct ggaaaatttt ctctctgtcc tcagagaagg ctcgaggata
      121 tatcctccct gcggtgccag agtgtgtggg tagcatgtct ctgggcatgc ccctctttct
      181 ctcctcctct gcagtgagtc cctccagagg agaggaggtc tcagggcact ctcacctgac
      241 cttctcactc tcagtcattt cccaaagtcc caggttgagc accttgaggc agggcagctg
      301 ggtgatgcgc tccaggcccc gcttggtgat gcgggtgcag ccgtagaggt cgatgcctgt
      361 gagctggctg aggtgctcgg cgatgagctc caggcccttg tcggtgatgc ggacgcactg
      421 gccgatgttg agggtgcgca gcccgtgcat ctgccgcacc atgcggttga tgccctcgtc
      481 actgatgtgg caggagcaga gggacaggga gcgcagcccg tcgaggccct gtgcgatgta
      541 ggctaggctc tggtccccca ccttgtcgca gaaggagacg tcgaggccgg acagccgcag
      601 gctgcccatg gccaggtgca tgatgcccgt gtcgctgatg ttgtcgcagg agcgcaggtt
      661 gaggctccgc aggctgctca tgtgcgacag gtgcagcagc cccgcgtccg agatgccccc
      721 gcagaagctg aggttgagct ggcggaggcg
//
LOCUS       KCOD01001086             641 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 121331pyr ultra-conserved element
            locus uce-6827, sequence.
ACCESSION   KCOD01001086
VERSION     KCOD01001086.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 641)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 641)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..641
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="121331pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>641
                     /note="ultra-conserved element locus uce-6827"
BASE COUNT          191 a          126 c          131 g          193 t
ORIGIN      
        1 aaatgcaatt gggctgctcg cactgtagtt tacaatttaa agcaaaaata tgacctgcgt
       61 ttttggttct gtcaatctta catttctcca atgagactgt gagaaaagtt atgtgatcat
      121 ttctgacagt tcttggcagc tgggcaggca agcattggaa aggatctctc tctcccgatc
      181 caagattaaa tttggactga aacacagggc tcatttaggc agcaattaaa ggaccttata
      241 gactgaggga gaatgaaatg ataaatgcaa agaggcttat ttaatgggga tattaagtaa
      301 actgctggta aaaatgccca tttatcatcc actgattcct aattggtttc ctgttcctgc
      361 ctgcatgtgg cattttcaga aggaattacc ttcctttagt gcgactgttg caaatgcaat
      421 aaatcaaggc catagatttc tagctaattt agatggagac taaattggag ccaaagcatg
      481 caagagtgct tgcaattaat gttcattaca acttttagct tcggaaggat cattttaatg
      541 caccattccc gagcaaggat gctgcttcaa gacttggcca ccctttgtat gctcaacaaa
      601 aatcacttgc ctttgtaagc cactggactt cctgaaacct t
//
LOCUS       KCOD01001087             807 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 121441pyr ultra-conserved element
            locus uce-3, sequence.
ACCESSION   KCOD01001087
VERSION     KCOD01001087.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 807)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 807)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..807
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="121441pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>807
                     /note="ultra-conserved element locus uce-3"
BASE COUNT          260 a          143 c          184 g          220 t
ORIGIN      
        1 ctctgttccc tgcacacagc tgctattcaa aaaatacaag gagctttgca ttatcatttt
       61 taagctagta accgtagaac agcgcagaat agatgacaca cttactgtaa tgtcccatga
      121 agcaaagttc ccatctagag agagaggcac tcttattcca ctccctgcaa aagggttaac
      181 cattatgaag aaacattatg ccagacatta gcagacagcc tacttagata ttacattttt
      241 ccatacatga taaatcctgg gtaaacctgt ttttcttttt aaacaccttg cagagtgaag
      301 cctagcactg catctagttg ccaaagcaca atcaatatgg aaggagcggt attttatgat
      361 tggagaagtt gttgtgtttt tggtggtgaa attcattatt tagtatctga accctcagca
      421 tttcagtatc atttattcat aaagtccctt tttgccagga ggaaatggat acagctgtag
      481 agagagagag tgcgagagag ggagagggag agggagtgag acggattgat gatattgatc
      541 aggtaccatc ttgaaacaaa ggctaggtgc tctattttag ttgacaactg tgacacataa
      601 aaaacaagca agagaggggg aaggctaggg ccttgaacat cacaggcttt aaaaagcgtt
      661 tgaagaaacc attatgacaa gcaggtctag gcaagctgct gcaaaaatgt attcagaaga
      721 gtcattaaaa aatgatgctt tgtttgcctt gtgaatatga ggtttgtagc tagctgcaga
      781 gcactctcct acagaggaaa tgatgag
//
LOCUS       KCOD01001088             636 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 121550pyr ultra-conserved element
            locus uce-5902, sequence.
ACCESSION   KCOD01001088
VERSION     KCOD01001088.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 636)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 636)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..636
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="121550pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>636
                     /note="ultra-conserved element locus uce-5902"
BASE COUNT          203 a          122 c          102 g          209 t
ORIGIN      
        1 tccagcctct ttcaagatgt gctacctttt tataaaacgg ctcattattt tggttttggt
       61 tcaagaacaa ctaaagttgt tgctgatttt tggcaaggta gttcacacat tccctggcca
      121 aaatacagta gctgatgttc gttccatcat gtgactggta caatgaactg tagtgggtca
      181 aatagtggtg actaataacc ctaataagac ttattctatg ttggagctaa caaatccttt
      241 atcagtactt caaccattct gcttacgtgg cctcattgtt aagattatgc ttttcatcta
      301 tgggaactaa tccctttcat atacaatttt agcaagaagc ttataaaatg tgtattaaag
      361 catattgact tgtccaacaa taaaaagtac aattaggctt ccaacacaga gcattactaa
      421 tttgcataaa aacctctcta acccattcct tttactgcag agtataacca agaggttaca
      481 ttctgtacca cgcaccagta atttactgta aaatcagtag atagctgtac ctgtgtaata
      541 gtgttcactt tctttgtgcg aatcttttaa aagtgaattg acactccgaa tgtatcaata
      601 ggaaataata taaaagatca ttacactgaa tgacca
//
LOCUS       KCOD01001089             537 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 121661pyr ultra-conserved element
            locus uce-4518, sequence.
ACCESSION   KCOD01001089
VERSION     KCOD01001089.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 537)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="121661pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>537
                     /note="ultra-conserved element locus uce-4518"
BASE COUNT          168 a          122 c           80 g          167 t
ORIGIN      
        1 tttgagaaga tgcatctata atattcctgc aagttttgaa atgtggcata ttattcagcc
       61 ctagtccttt gatgtgtgtt tttccctcaa tccatgctcc aacaattctg tcatacagag
      121 aactgaaaat taagttattc tcaccagcaa tactagaatc tatcaaacca cagatataaa
      181 cctcagaaca atccctgcca ggtttctcat gcaaatgacg cagaaaaact tacaagagca
      241 ctttaagata ttgagaaccc ttcaatacaa cccagtataa taacttttac ttgctaattt
      301 ctatgggtca gttgcaaagg aatagacctg tcaatctttt tcagatgtag cagaatttgt
      361 ctgtctgcaa acagggatgc tttgttgttg ccatagatac taatcctcca ctttccttct
      421 gttgacacag ctagtcacac tctaaactac ctgatcacac ttttaatagg cagctgactc
      481 cagtaccata aaatgctcaa atcaagttca caacacttga cgtatctact gttgctt
//
LOCUS       KCOD01001090             825 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 121773pyr ultra-conserved element
            locus uce-4201, sequence.
ACCESSION   KCOD01001090
VERSION     KCOD01001090.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 825)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 825)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..825
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="121773pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>825
                     /note="ultra-conserved element locus uce-4201"
BASE COUNT          226 a          168 c          160 g          271 t
ORIGIN      
        1 agcaagatcc atttcctttc gtttttacat gaaacataga aaaaacacaa gcgagacatt
       61 ttctgataga aacaggcaca tacatgcaaa gcatcaagct ggaatatttt ttatccttaa
      121 ggaccaaacc ccaccaaaga gatttccagc ctaagagctt caaggtctcc agctttcagt
      181 tattcattca ggatagctgc aggttcgaag tgccaggact gactcattgt gttaaggtat
      241 tcttaatgct ttctcttcct acactgccag actgaacgtc accctagaac tggtttgtaa
      301 ggtacaatga aagactgaac ctgccatgtg accaagatga catttctcat cctcaaagaa
      361 gccacatgta cctttctgac aaagctgtgt gaagtactag aatctgatgc tgtagaaaga
      421 tcctagttgc ctttgtgtat atttactgcc tgcttgagtg tttctctgtg tgggttttct
      481 ctgtatcttg tagaaatgtt tggggtgttt tatcctgcca tatcgctcgt ggcccgcgag
      541 ctgacaactt tagctgtatt ttaccttcat ttttgatgag gtggtttata ttttgtttca
      601 ctttgtgtag tgacttccca cagtagagtt ttccaattgt cgttaacata catattacac
      661 agatattcaa taaaaatgtt ttatttcctg ttgatgtttt ctcttttgat ctaaaatttt
      721 gaaaagacat tatcacatac tttgaagtgt cacaagcata gcacagcgtt tcgaggggct
      781 gtgaaaagct gctttcatca gtaagaagtc acagccggca gcgct
//
LOCUS       KCOD01001091             905 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 121885pyr ultra-conserved element
            locus uce-1043, sequence.
ACCESSION   KCOD01001091
VERSION     KCOD01001091.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 905)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 905)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..905
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="121885pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>905
                     /note="ultra-conserved element locus uce-1043"
BASE COUNT          255 a          198 c          165 g          287 t
ORIGIN      
        1 gaacttgctc atcttcgaaa gccctttgca tgcttcttcc ttcaccctta actctgatcc
       61 tcgcagatct tcccttatgt gtgtgccaat tttaatggta taatatgtgc gcttctttta
      121 gttgtgttct gatgatttct actgagagat acttaaagct tatacaagtc aaaaactatt
      181 ttatcacttc tgaagaaaac taatagggca gagccactga atgataagag agaccactgg
      241 atttatttaa taatgcatgt ccatttcaca aaaatggcct gtgtaatcct tttaaaaata
      301 ataacctgtt catttcagac cttgcacaat gcttctcttt gtcccttgta agtctctcaa
      361 atgtcttatt ttaaaggaat atatagtact cccggaagac attttcccat ttctattctc
      421 ttcaactcct gtgagccctt gttctgtgtg ataaggcaat ctccttcggg atctgagctg
      481 tgtagtttcg caccacgagt gacaaggact caacttgaat aactgctgtg cgcaggttgt
      541 aattatgtca gctggagtgt tgaacaaggg gactgattaa tgtgagcccc agcccaggca
      601 cagtccctat caaaaccttc gtgcaggcca gcagtgggga tgggttaaag cagaaagaca
      661 aaacatgctg tatcgcccat gatagatgaa ttgctccaac agtcttcagg cagatgttcc
      721 aggacagtat aatatacaat tactctgcct tatcaccttc ccagggacaa taaagcttcc
      781 tccttctata gctcatgtga gtgaaggcaa aattagtttt acttttacaa cactgactca
      841 cttatcatgt tgccttgatt gtgcttttac agctaaagaa aacatatatt gcactcttaa
      901 actaa
//
LOCUS       KCOD01001092             705 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 121992pyr ultra-conserved element
            locus uce-2704, sequence.
ACCESSION   KCOD01001092
VERSION     KCOD01001092.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 705)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 705)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..705
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="121992pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>705
                     /note="ultra-conserved element locus uce-2704"
BASE COUNT          204 a          142 c          167 g          192 t
ORIGIN      
        1 aagctgctgt ttggacaaca tccatttgat aatgaagcaa gatgcaggct agacagctgc
       61 ttttttctca ctcatttcac tctgttattg gttaacttag tggaaaaatg taaattttcc
      121 agggacttta ggttggaggt atcccaggca aggtagatat gtgctcgact tgaggtctaa
      181 tttaactcct gtgttgtatc gaccggcttg gcccaccagg gaccctcaga gccctccttt
      241 gccaaaggta gacaatggga tgaaagtaaa gtgtaataaa tgcccctgtc cagtcccatg
      301 tcgatatcca gctgcttctt ttttgctgtt ttgagtgcat cagtatttca cgtttattgt
      361 agtgtgatga aacacctttc agaatggcca gagggacact cagcagtagg catttaggca
      421 gtacaaattg gagtgaacag gaggacagtt agcagggaat atttctgagg tcaaagcaga
      481 ttggagctga atcagctgaa gagttgagag ctacagtacc tactgcaacg taaatatgga
      541 ttacattcct ttggacaaat tgatccactg gaggatgata ggtctcccag aaaaagaggt
      601 tgctacataa gtattttaca ctgacaaaga acccttaaac acagcagcca gagatgtatc
      661 ctggagagtc catcccagac cctcacagga ctgcaagatt taagg
//
LOCUS       KCOD01001093             665 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 122103pyr ultra-conserved element
            locus uce-7048, sequence.
ACCESSION   KCOD01001093
VERSION     KCOD01001093.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 665)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 665)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="122103pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>665
                     /note="ultra-conserved element locus uce-7048"
BASE COUNT          168 a          181 c          134 g          182 t
ORIGIN      
        1 gctcgtgtaa aggttttcaa agctcagctc acatgtgcac acatattctg agctcttaac
       61 acttctcatt ttctaactaa gataattgaa tgactcagtg aacatggctg gcattaaaat
      121 cttgggggag ggaaaagcag aggtagcaag cactaaatcc tctgccaaat ccccttttca
      181 taatttatag tctgtcacca gtttatcacc gagaactgtc cctctttttc tcattctcca
      241 ggctcctttc ccagtggaca gtccatgcca gctgtctcgg cagcaggaac gtcctttttt
      301 tcccaagcct cgacctgtgg gaaaatcttc attggccagt aattgattcc accctgccag
      361 ctccattact ttagtctaca gtcaaactgc cagcaagctg gagacaggca gcctcagccc
      421 tcccctgctc ccgctattga acccgctcct gcccaggcta ccggggctct gagctgatgt
      481 gtcagcccgc cctgcaatta gcactaatct gaaaattggc ctttgctagc aaagccaagc
      541 acctgacagc taattgttga tgtcagattg atgtgcattt aatatggaaa ggttatttat
      601 caaagagtac ttggtttgtc cctggattgc cacaggcgct tacagcccac agaccaataa
      661 agatc
//
LOCUS       KCOD01001094             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 122212pyr ultra-conserved element
            locus uce-5093, sequence.
ACCESSION   KCOD01001094
VERSION     KCOD01001094.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="122212pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-5093"
BASE COUNT          235 a          109 c          118 g          240 t
ORIGIN      
        1 aatgttaact ttttatacac agaagtgctt gtgagcactt aggcctagaa aagcaaaccc
       61 acaggcccct ccttacacca atttattttt ttgaactgag tagaaaatat gtataagaaa
      121 atgcaactaa atatacttct gacagctcaa atgatacata aatataaggg ctgacaaggg
      181 ttggtttgtc attgtagttc acttcgatca actctacatg gttctgtagg acaatgaaat
      241 tcaatgcact tataatttcc aaaaaagtga gctcagattc ttttaaaagc atttctatgt
      301 gaaaacggat catttacatg ccaaaagcac ttttaatgtg acatatttag cacatgtatt
      361 attgagaacg aaagctgctt gaacttagtg aattttaaag tctataaaat ggcaccctgc
      421 tgagcagaaa ggtagctgtt cagtgaattt cctggttatg tgattatttt gaataataga
      481 cttgtacata acttttttat gaaattaaag gtatgacatt tgctttagtt cagtcctcta
      541 aattgcactt tagaacataa agaatgggct gatgtatgaa tttgttgttc ctccaagcaa
      601 ttttgctgat tttttaaaga acagttttat gtttcatcta ttgagtaaca catcaaacag
      661 ttatcttagt agatttaatg agcattcatg tatatcttaa ca
//
LOCUS       KCOD01001095             622 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 122321pyr ultra-conserved element
            locus uce-7946, sequence.
ACCESSION   KCOD01001095
VERSION     KCOD01001095.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 622)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 622)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="122321pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>622
                     /note="ultra-conserved element locus uce-7946"
BASE COUNT          154 a          175 c          129 g          164 t
ORIGIN      
        1 actgaaccta atcaaagtta caattccttc attagcaaat tacaaacaag agcgcgcagc
       61 tgacacaccg gccatgatta tcacaactaa ttgcctcgtt gttacggagc agcctgaaac
      121 tgtgttcaga tgtccgtctg tggtagcaaa ttagggccac atcaggctat tcccgcgatc
      181 acaaggggct cttgtcgagc gatctgattt accctgctcc tggcagcact cggcccaatc
      241 aaagccccct ctacaaaggc agctttgaag ccagcacagc ctagaaaccc gctccatatg
      301 caggccggca gactgcactt cattaggcct gttgtcacat tttccctctt cttattctaa
      361 tgatcctatt ttaatacaca taggaacctc tcctaattga tgtcaagtga gtgacttcca
      421 cattcatcac cagcgcacat caaacgcgga cccgaggcaa ctatggaaag caggtatttc
      481 ggcattacct gtttaattgg gattgctcgg ccgcttccaa tgctgtctgt tctgctctcc
      541 aggaccttct tctctttgtc tgggtcgctc cctttccgag actgcagagc gaaaagtttg
      601 tgctccattg cacaaggagg at
//
LOCUS       KCOD01001096             654 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 122429pyr ultra-conserved element
            locus uce-80, sequence.
ACCESSION   KCOD01001096
VERSION     KCOD01001096.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 654)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="122429pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>654
                     /note="ultra-conserved element locus uce-80"
BASE COUNT          217 a           94 c          109 g          234 t
ORIGIN      
        1 agattgattc ctaaacaaaa caagggatgc attacacgct tgtctagaga ggatataacc
       61 tcttatgtgt ctcctttata tattttttta cccttagaag aagtagtact ttactaatat
      121 ttgagtgaga aatatagttg ttaaaaaaag aaatttatgc tgaaaactgt tctagaaatt
      181 tggatagaaa agtcagttga tggaaatgtt tctcactctt aaatctctag ttgaagttca
      241 tttgacaaac ctattataaa atgaataaat gtagctctgt gtgatttgtc cattgtcaac
      301 atgttaacaa aatttatttg aaggtagatt gatgaaggat ggctgaagga gtttaccctc
      361 ctgagttaaa gaatagaaaa ccctttttcc ttagcatttc tctttttttc ttagaagttc
      421 acaagagtag atatacaatt atcctcgact tgctgatgca aaggaacaga gcatttagtt
      481 tcttgtcact gtctctgaaa ttcctaaagg tacaattagc atttcatttg acataatgtt
      541 gaaaggttca tagattgatc ttccctaaaa tgcagcaaga attttttgaa atgcaaattt
      601 tgacatttat taacttttat tccagatctg tttatagact gtaaaactgt gcat
//
LOCUS       KCOD01001097             558 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 122539pyr ultra-conserved element
            locus uce-5224, sequence.
ACCESSION   KCOD01001097
VERSION     KCOD01001097.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 558)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 558)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="122539pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>558
                     /note="ultra-conserved element locus uce-5224"
BASE COUNT          181 a          126 c           98 g          153 t
ORIGIN      
        1 atctgctcct tcatttaatt tcatctgtac cactggccaa gagaaacgca ctaatttata
       61 agttgaagca agccttgaga taatgtcacc caccattcat ccaaatttgt cactagcatc
      121 ccattaaagc cataattatt ttttaattaa aactaaggaa gctggcatgt gtgtgcctac
      181 tttatacatc tgttatgggt taaaatagct tttaaaaaat gtttctttag accgcagtct
      241 tttgtggcca tggcctatgc caaagaaaac gcaaacttgc ttattttctc catggggcgc
      301 aacactgcct atgtgtgcct gaacagattc gactggccgt gaaaagaatt ctaaataaaa
      361 cacaaacatg gaatttggca actccacaga agcgagctta agactaattc cagcatgcgg
      421 acggctctca cacagcaagt ctggctccac tataaatgaa accaggctct gtaaaatcgc
      481 cagtaaagtt tgagttagga tttaaagaga cagcactctt attccaaggt ttaagacaca
      541 cacatgcaca cacacaca
//
LOCUS       KCOD01001098             642 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 122650pyr ultra-conserved element
            locus uce-6152, sequence.
ACCESSION   KCOD01001098
VERSION     KCOD01001098.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 642)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 642)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..642
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="122650pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>642
                     /note="ultra-conserved element locus uce-6152"
BASE COUNT          212 a          117 c          104 g          209 t
ORIGIN      
        1 ccaagtctaa tgggttaaat gcttattata ccactgtctt atttgtaaca taaggcacct
       61 actacaagcc tactcttcat gcaaaattgc caatttatag caatattcct tgtttagaaa
      121 acaaggctat ccaaacacta taattacaat atgcaccagc aggcataacc ctgcattaat
      181 gcacagactc cagatacatt cgtcaaatag agtttttttt ctctttgcct tcttctcagg
      241 gtacttttaa gttcagggac agagaacatg tcttcattag aaacattaac attcacaggc
      301 tgtagtaaat tttgacagtg aaaaggtctc tgtaaccttt agttgtgcag aaatttactt
      361 cccaagaaaa ttacagctgg cactgtctta attaatgcta gctttctttt ctgaaaattg
      421 tgggcttgtc agtaaaaaag gcagaaaaac ctgagtttaa aagactggac acaaaagacg
      481 cctagaaata aagccctgca aaatttcata atattgctct gtttttgttc tacagtaagg
      541 agatgaaaag atctaatttg attttgccaa atggagcaac atatatgtaa tatagaaatg
      601 atttgcattc tctcttttgt ctttgagttt tatcatgtaa ag
//
LOCUS       KCOD01001099             685 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 122761pyr ultra-conserved element
            locus uce-5100, sequence.
ACCESSION   KCOD01001099
VERSION     KCOD01001099.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 685)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 685)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..685
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="122761pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>685
                     /note="ultra-conserved element locus uce-5100"
BASE COUNT          195 a          133 c          161 g          196 t
ORIGIN      
        1 caagccagat gggactggca gagacatgtc aaggaagtgc tgaaaaggtg acttgggtct
       61 ctggcagcta gtctggagct catttctttg cgaaatctct gggggctgct gctttgcaat
      121 ttctcaggaa tgtttaattc tcctcatccc tttgctgagt ctctctggag aggtcatgga
      181 ggcctgtgac atccctggag ggcactgcct aactaaatta gcatgagata actttggact
      241 ctcttccaaa caagaaaata caagggagag aatttcatta aaagcagaag actaggtgat
      301 ccaagttaat cccagcccag agctgctgca gaaatgttct ctgtttatat tttgacttta
      361 ctctctgtta cagagttcac tgactataat ggaagctgtg ttaagtgcac aacttgacct
      421 cagttgacca atcttagttt cataataaag aaaaagtggg ttaggcggct ctaaaaggtc
      481 tgattagtta ctcttttgcc tgtgtgtgac tacacagggc actgagtgaa tggtagaaga
      541 taagctccta tgtactagat gagctgttta atgaagaaac atgaacaaca ctactacaac
      601 cataggtgtg caagtcccaa acttgcattt ggatttttat ttaggttcct tcaattggtg
      661 ccgggacaac tcagagaaga tggaa
//
LOCUS       KCOD01001100             524 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 122871pyr ultra-conserved element
            locus uce-4172, sequence.
ACCESSION   KCOD01001100
VERSION     KCOD01001100.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 524)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 524)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..524
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="122871pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>524
                     /note="ultra-conserved element locus uce-4172"
BASE COUNT          156 a           96 c          128 g          144 t
ORIGIN      
        1 tgttccttac tttaaaaaca gagaggcaga cggggcaagt ttaaggcaag atgtggggaa
       61 aatctaaagt gaaggtagaa agaaaaactg agcttattta tacagtaaca cgtgagagta
      121 atgcctccct tcctcggcta tacgctcccc catcttctct ctcacacacg tatatacaca
      181 cacactttaa ctgtgctttt gtgttttgtc agaattaatg agaaaagttc ccttgcccta
      241 ggggtaatta gtgtccttgg agttaaataa gctaatactt agacacctct ggcacaggca
      301 attatgtttg tgtattgaat aattgattca aagagggggg gaaggggctg ctaatcagat
      361 ctgagcataa tgaattgatt taattaacag gggaatctga gggtccctgg gaaatgtgtg
      421 catttattca gcagcaggag agagtgcaaa gcacataaat tgagcgagcg agcgaggcag
      481 gcggcaagtg cttttgcttc cagtgatagg ttcacatctt tcct
//
LOCUS       KCOD01001101             460 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 122980pyr ultra-conserved element
            locus uce-4394, sequence.
ACCESSION   KCOD01001101
VERSION     KCOD01001101.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 460)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 460)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..460
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="122980pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>460
                     /note="ultra-conserved element locus uce-4394"
BASE COUNT          168 a           65 c           91 g          136 t
ORIGIN      
        1 tttcagagaa gtgatcatag aagctaatga aatgcagata agtgcattag gtatgcaccc
       61 tcttattctg tcatttaaaa ctcaaaatca atctgagtta ccttaagtgg caatactgtg
      121 tctttaatcc ttgattcatt tgttgtgaaa tatagtcaaa ataataattt gaaagggaaa
      181 tttgaaaatg tcagatagta aatgcatatt ttacttattt taatgtttgt tgatttgagg
      241 ctttgagggt aacacagtaa atattcggtt tggctggcac aaactgtgca ggaatctaat
      301 agaaagcaat attgttgaaa atggatatca attgaaaaca gagagcagtg tcaactattc
      361 cccactggga gcagacaaca ataaaaccag tcaagcatta cacagttgag cctgccaaat
      421 gtcattagag tgtagaaaaa aagtaaagga acatacgagg
//
LOCUS       KCOD01001102             718 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 123093pyr ultra-conserved element
            locus uce-7500, sequence.
ACCESSION   KCOD01001102
VERSION     KCOD01001102.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 718)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="123093pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>718
                     /note="ultra-conserved element locus uce-7500"
BASE COUNT          230 a          130 c          105 g          253 t
ORIGIN      
        1 tttattaata aaaaaagtag gagttaaatc cttttaccaa catagtgaca ttttttccag
       61 ttcaaataga tatggtccta attgcataat gccattttat ctgctgaaga taaaagtgcc
      121 gataaaaatg cacattaggc aggagatttt tcagaataga tttttttttc aaataaccca
      181 cttgcattaa caaaagattg caatggcttc caaattatag ggtgttattt ttagtggaag
      241 tagttcaata ttcatattgg agcagatgta gcagtttaac aaaacagctc ttcaaatcct
      301 gcacaaattg aaaacaggaa aactgattgc attttctctt atcactttcc ttttctgcat
      361 tgacactttt ggccttctga aaatttacac atggctttca tctcaacagc acctgctgat
      421 caaacagaaa cctaacattt tcaggaaaat ggtataaagg actagttttc tttttaccat
      481 cttaaagggc atcggcagtc cacttgatgg caacaattgc tgaatagatg gcacacaaaa
      541 tacattttat attttcattc cacttacttt taaaaattag tttcttctgt atttgctctt
      601 tgtctgcttt aaattaattt ttatctctgc attaccctgt ttcattctac agtcagccag
      661 attttaaata tgatctgaaa gcctttgaaa taagcatatt ctccaaacag gggtcttc
//
LOCUS       KCOD01001103             428 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 123200pyr ultra-conserved element
            locus uce-7021, sequence.
ACCESSION   KCOD01001103
VERSION     KCOD01001103.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 428)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 428)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..428
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="123200pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>428
                     /note="ultra-conserved element locus uce-7021"
BASE COUNT          142 a           84 c           78 g          124 t
ORIGIN      
        1 agaaagtcac tggccaactc agactcttct ctccactcct caatagagtt gttagaaatg
       61 aagaggaaaa tattgcctta aaaccagatt tgagcagtat ggaaggagtt agactccttt
      121 ttaagtatgt ttttccaact aatactcttg tgtagcttaa aattatcctg acagaaaaac
      181 aatcaaggca gcttttaaac taatgacaca atcccatgga taatttcccc taaatagcac
      241 agagatgtga ctgaatgatc ccatatatca ttgtgggaag caattttcct caatgagttc
      301 tacctgctgg atattgcaat gcattacaga gtgagtgaaa tcagattcaa actggctttg
      361 gagcaaaatt taaaccctga gggtgaagag ccatgattat accctttgat tcacaggttc
      421 cacacatt
//
LOCUS       KCOD01001104            1007 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 123311pyr ultra-conserved element
            locus uce-717, sequence.
ACCESSION   KCOD01001104
VERSION     KCOD01001104.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 1007)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1007)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1007
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="123311pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1007
                     /note="ultra-conserved element locus uce-717"
BASE COUNT          311 a          199 c          190 g          307 t
ORIGIN      
        1 tgacacctca atatatagca aaggacaccc tgaaatggtc attgctattt caaatgaatg
       61 acatcagtac accacattgt caaaaggaat tatccacaaa accagggcat ttgaaagctg
      121 aacttacaca tagttatggg attttatgca gctgagaaac tggtagcaat aggaaataac
      181 tccatgcgtt gttttacatg ggcatgtttg aattacacat acaacaagag ccttccattg
      241 ttcactctgc tagtgtgagt acataatttt cctgctgtct ttttcttttg ttcttttcat
      301 ctattttgtg attaacaccg tctggggaag aatttcagta ttttctctgg tttagcagga
      361 tgtgagtgag gtggtgctgc tgcatgaatc ttttaaaagc agcctaagaa atatttaaga
      421 ccttagtcta ggaggaacag ctctcccagg cataattttt ggtgctggtt gcagcaggga
      481 gcgtatgctg tgaggaaagt attatttttc taaatggaag gtgtcagatg gtcacgcaat
      541 gtgactgcat gttcgagatc actgcctccc atctgcaatt tgtgacgtgt gaaagattct
      601 gcccaaatgt gctcaccaac tggaaaccct cggcactttt tttttcttat caggagagac
      661 caagataacc aatggtttta cagatcaggg atcctatcaa attaatatca ttctaggata
      721 aaatctgctt taaatacaac cactaaactc cagcaaagtt aactagtaca tacaagttca
      781 ttcaactgat taaaaatccc tactagtaaa acaagaaaat atacatggac aagaaaagta
      841 ttctgttcct atctttaagc caaaggaaaa catgacagtc ttttccagca ctaattaatg
      901 ccacctaatt ataacactta ctaggctcaa gcgaggcatt aatatgctgt gaatagtttc
      961 tccttgtcca gcttcccgct ggatcacaca agatgattgc tatttgc
//
LOCUS       KCOD01001105             707 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 123424pyr ultra-conserved element
            locus uce-1359, sequence.
ACCESSION   KCOD01001105
VERSION     KCOD01001105.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 707)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 707)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="123424pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>707
                     /note="ultra-conserved element locus uce-1359"
BASE COUNT          206 a          141 c          137 g          223 t
ORIGIN      
        1 aggtgactcc tgggcaggcc gtgccttaga taatgttgag cagccaggtt tctgcattaa
       61 tgtacgggta ctcaacatta ttcagaatcc attatatatt tatccttata ctcctttgtg
      121 gaaaatgatt tctgtaagta ccctattacg gttatgaaag cctaaataag catcagtctc
      181 aaaccctttg acctgtctgc acagaatgga gatctgtttt gaaaaggact cctttatatc
      241 tgtttttact ccatgccctt ccattcattt gcctatacaa agcaataaag ggtaaaacta
      301 aagtaacata aattggtctg tcttcctgaa tccatgtctc actaatgtac ccagattaac
      361 tcaactgtaa attgtctcct ttggatgtcg tgtcttgcta aaagtttcct atatgattca
      421 tgatttggat tgcttttaac agctattggc taagcaatat ggtaaatgta caaggtgatg
      481 caattggcat tagtgagagg atgcacagga gcatgtaatg cagtcaatac tacattaact
      541 actgatgccc aattacagaa actggaagag tggcttttag gagcattagg acttgcagaa
      601 gagctgagat cacctgccgc tccttgccta aaagcttcac cctttacgcg ctgggatcaa
      661 agcaaacatt tagttgctct tttgtcatgt ataacaacga aggtatt
//
LOCUS       KCOD01001106             719 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 123535pyr ultra-conserved element
            locus uce-6432, sequence.
ACCESSION   KCOD01001106
VERSION     KCOD01001106.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 719)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 719)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..719
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="123535pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>719
                     /note="ultra-conserved element locus uce-6432"
BASE COUNT          233 a          167 c          123 g          196 t
ORIGIN      
        1 aggttcttcc tgcataaatg cactcatttc actttatgct tgtaacctat catggtttaa
       61 actgatagtg tccctctaaa aatcaaggta cttaagcaaa gttattcttc acacatacat
      121 gaagatctct cctgctgaac ggtgacttca atgtctgtta ttttaaccaa gtcaatcaag
      181 ccctacctac ccaactgctg tgattatacg ttcccttata catactgcat acaatttata
      241 tatgtgtata cacatatact caaatatgga acaaacagat tgcagcctca atcctatcaa
      301 aacttaccca agggtgttgc ctgccagtct gcccagagtt tcagaaccag acagaaacca
      361 tggggagtca ctagtcctgc ctggcctgga tgtccttcct gcccctgagc cactgctcaa
      421 ctttgaactg aaagtaaaag atggtaaatc agtcacaaaa caatcccaaa tgggttaaga
      481 acaaaacctg gaatcccagg ctgaaattct cagggactta gtctggtaac ataccagctt
      541 aagcaacacc cttggggaat attccaaact aatctaactg taaaagtgga aagcatgcct
      601 aacagacctt acgtacatgg gcaatccata atagcacagt tgcaaataca tattaagcta
      661 attagagtta gccactgtgc taaggtatat gtacaaattg taatcagcag gtgttctaa
//
LOCUS       KCOD01001107             814 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 123649pyr ultra-conserved element
            locus uce-1206, sequence.
ACCESSION   KCOD01001107
VERSION     KCOD01001107.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 814)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 814)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..814
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="123649pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>814
                     /note="ultra-conserved element locus uce-1206"
BASE COUNT          266 a          144 c          179 g          225 t
ORIGIN      
        1 aataagctaa ttcagatcaa ggtgccatgc tgctttgtgc atgactggtg tatatacaga
       61 ttcgttttgc cttgacatac tctgctgaat ttagggggaa attttctaaa caaactgtta
      121 cattccttgg acaaagaagc ttaacacttg cagcatgata acggctgaag catgccaaca
      181 aaaagctgtg ttaacattca tgttgtctga aacttaacac agtaaaactt ttagcaatcg
      241 gtgataaaat gaaaaccaaa atagactgaa acaagtggaa aattcatcaa ggtctgatga
      301 tgcaatgttt ccagccaata taagtatact ttaacaactt gttctttact gtaatccaat
      361 tgttaacata ctgaaacaat tttggggcag ctcataagat tgatcgtatt cattagtatt
      421 ttttctgaca gatactcagg acgttacatt tacttctcag ctggaaacta tatgcaagtc
      481 tgccagatat ggcaaactgt gagtgtttgg ggagggggag gctataaagc tgttaaattg
      541 cctacggttc tgatacagca cagaacatct ggtctggaga gcttgaggaa acaccattaa
      601 ataggcagaa aagaaaaaaa tctttgtgct aagaaacagt ccaggttttg tatgcttctg
      661 tcagaggtat aaaaaaactt ggcaactcgt gtgatgattg gtcagtcacg tacagagcca
      721 gacacgctag caagcagggt ttgttagaca tctggtcggg ttccaccagc cccttccacg
      781 agggagggga gatgaaggaa taaaaatgaa gcag
//
LOCUS       KCOD01001108             641 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 123757pyr ultra-conserved element
            locus uce-5331, sequence.
ACCESSION   KCOD01001108
VERSION     KCOD01001108.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 641)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 641)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..641
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="123757pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>641
                     /note="ultra-conserved element locus uce-5331"
BASE COUNT          174 a          143 c          173 g          151 t
ORIGIN      
        1 agttgagcaa gaggaattgt gagatgcttc ccttaccaac gtggggaata aggcctttag
       61 acgtgttcag aactgccgag agactcccag caggttggag aacggcggca caaggacata
      121 aacagctcgg gatgggaaag gagggaaaca gcaatcacag cgccgaatcc cggaaggggc
      181 gcggggaagt ggtcacaggt gattgtcatg tgtgataatt attattactg tacacctgct
      241 cctccgcact aattaacttt ggatatgcaa atcaatccta ttgcatcatg cccctgctct
      301 cctcccctac agataagaag atgttcagct gctggattta attaggataa tgaacggcag
      361 gcccactgtg gcttggcagg ggaggagagg ggggagaagc tgtgactgac cttttctccc
      421 aaaacgttga cattttctat agcttctgag cactccgagt cacctccatg gctgggacgt
      481 tgataggagc ggattgatga ggtgtcatta gaggagaaac accatggccc cagtgtttgc
      541 tgggagaata cagcaggtgt tctgacaagg acacaagcca tcactgttat ttgccaaaca
      601 attctcttga ttcactaaag tcaagcacgc cagcatttct t
//
LOCUS       KCOD01001109             720 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 123869pyr ultra-conserved element
            locus uce-3656, sequence.
ACCESSION   KCOD01001109
VERSION     KCOD01001109.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 720)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 720)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..720
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="123869pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>720
                     /note="ultra-conserved element locus uce-3656"
BASE COUNT          241 a          112 c          129 g          238 t
ORIGIN      
        1 atggcaaata tagaaaataa aacagtgggt agatgtctgt aaatggtaat atgcattcaa
       61 atattatttt aaaaaaatat gttctaagaa ggcaaatatc tttgttttat aggtctctgg
      121 ccctctgaag aagtgctggc ttactactgc ctaaagcata atgaaatatt caggtacaga
      181 gttaaacatt tttccaatct cttagtttta ttgtatctgc atggtaattg ctatgattta
      241 agtcttcaga ttaaatttaa aatgttcaag gtgaaagcat gttgctctta acaaagaatt
      301 ctgagctgcc tttgggtact aatattgcac agcaagcttt ctgctatatg tcaaagactt
      361 ttgatttcca ctcaaggcgt tttatttcac tttgattttt gggaaacaaa agtgaagctc
      421 caatcgatca gtgctgattg tgaaggtcag gaaaaatagg atattcttta aactgacatc
      481 cattgcaaaa gcaagcaaaa tattatctga taaaatacat aaaaatcact gcatatagta
      541 aggggaattt acacctgtat ttaagtgttg tgaaacagtt ttgagacatc cttaaactta
      601 tagaagacag ttatcaaggc ttctaaatat aaaatccatc ctgcatcctt ctttccccct
      661 gagtagactg agatttgcac ttggaaaccc ttgaagtttc attgtctgga ggatgaatag
//
LOCUS       KCOD01001110             678 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 123981pyr ultra-conserved element
            locus uce-234, sequence.
ACCESSION   KCOD01001110
VERSION     KCOD01001110.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 678)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 678)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..678
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="123981pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>678
                     /note="ultra-conserved element locus uce-234"
BASE COUNT          245 a          104 c          121 g          208 t
ORIGIN      
        1 aatcactttg attgtaacat cagtaaatct aaaaatcctc tggccatatt taacccctgt
       61 ctgtgataat gtaaagtggc aaataaaagc tagttcttgt aggaagtaaa agagatctct
      121 tctgcagcaa attccagaac ttcttaatta tacacagact tattatctgc atccccagtg
      181 ttataaagta ccagaacttc attagaaaaa ttaagatgga aaaatgaagg cgctacttcg
      241 caaatttcca gtggaaatta gctggaagaa gcagaggaat actggatcaa aagagggtaa
      301 tcatgcttaa ctgtgcccta gagcacccgc atgtataata cgatttgcac agtaactacc
      361 tctcctatta ctgcttgttt ggagtattct gtgttaatgg ggttagctaa tttagtattt
      421 taacttaaaa agactctgct gattaataaa tgttgcacac tgcgctagta attaaaataa
      481 atggaagagt tacaaacaga agttgaattg ttaagaaaac attatctgaa aatatatgat
      541 aatccctgtt tatcataata caataacagt ctggaaaata tgcaaattgc tgaagttgca
      601 aagcatatga caaagtataa tttgaaaaaa gttttcagat gtgttgtatt tgtatgacat
      661 aaaatgtagt agccgttt
//
LOCUS       KCOD01001111             623 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 124090pyr ultra-conserved element
            locus uce-861, sequence.
ACCESSION   KCOD01001111
VERSION     KCOD01001111.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 623)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 623)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="124090pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>623
                     /note="ultra-conserved element locus uce-861"
BASE COUNT          199 a          126 c          119 g          179 t
ORIGIN      
        1 gtaaaaatcc ctgttaacaa gaaagttttt tacctttatt ttcaatatgg catttttgca
       61 tgggaatgcc ctacaagacc cccaacagca agtttaccca gaagtgctct aattaactgt
      121 accaaatggc ctactcctct gtcatgttaa tgccttctat ctggctgttt gctggccatc
      181 atgtatcatt gttcagcaaa tgacagcagt caggttatta aaggtgtaga tattaaatta
      241 acaacagtgg taaacattgt agctgtactt cacatctcag cagagccaat gaagtggatg
      301 acactgcatc catgctgata cactgcaatg acagatgggc gtcatttaat acaatacatc
      361 agtgggcaac ccacgtacca cagctgtcct ccactaaatg aattagatca gggtaattaa
      421 tctaaggcag aaagtattac taaagtgggt cctaagcgga attagaaatg aatgaaatat
      481 cctgttaggc tcatcacagc atgagtgtgg aaatgattac taaacatttt gattcgacac
      541 acggctcttt gtgtgaagga tatttaataa gcacctcttt tgtcaccagg aaagcaagat
      601 ttgatactga gacaatccta tca
//
LOCUS       KCOD01001112             503 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 124200pyr ultra-conserved element
            locus uce-7046, sequence.
ACCESSION   KCOD01001112
VERSION     KCOD01001112.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 503)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 503)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..503
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="124200pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>503
                     /note="ultra-conserved element locus uce-7046"
BASE COUNT          163 a           80 c           83 g          177 t
ORIGIN      
        1 cagtttatca agcaggaatt tcaagtacgt attttcagtc taccaatgat ttgattttta
       61 acttacacca tttattgcta agaatcttag cagtgatgag gataagcaat gtagcataac
      121 acattgattt tatgcagatc atcaccttta tgttttggga ggtctgctgt attagtgata
      181 tataaaaact gattactttc tccagcattg cctagtaatt gtttattatt ttcctattag
      241 acaaacaaga cagatcaata ttcctgaaca ccaaccagac tatgagtaac atcactgtaa
      301 atagatttgc ctcagacctc agtggtgtat tcattttaat gatttagaca atgtgagtcc
      361 aatgacaaag cgctcaagct aagttaaaaa ttaaattaag gataggaatt gcttactttg
      421 ttcctttgtt aattgatagg gccttgtttc tttgccatta gttcctagaa aatagtataa
      481 aaataggtaa agtattcttt gca
//
LOCUS       KCOD01001113             607 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 124309pyr ultra-conserved element
            locus uce-4525, sequence.
ACCESSION   KCOD01001113
VERSION     KCOD01001113.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 607)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 607)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..607
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="124309pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>607
                     /note="ultra-conserved element locus uce-4525"
BASE COUNT          183 a          128 c          117 g          179 t
ORIGIN      
        1 cctttggctg acacccaaca aggctattag tttaaccatg ggatgcacta ccaaatgtac
       61 aagagtcagc agaacttttc cttctgaaaa ttgctcgtaa ctttctgcga agaagccttc
      121 gaaaacccag aaagaataga cggaaaaatc aggcaacaag gggctgactt attggcttcc
      181 gataactggc atggcttcag cttccagttt cttttcaaca atgtccgctc actatagcaa
      241 ccccagatcc catttaaatg tcatgctgcc ctctgttcta taaacatgta tcatccatca
      301 ctaaatattt agatctgaat tgttggagct gagttctgtg ccaggggtaa ggggattaat
      361 tcctttcaag gccctcacat gatggatttt tcactgaagt aaacatccga gaagagctca
      421 cactacggcc ataaaatata taaataaagt ttaaagttta attaagtcaa cattatttaa
      481 agtggttgtc atattttatg gtgaactctc tgtgtttatt ttgtatgact cctcataaat
      541 agtctctccc tttcagacaa aaggcacggc tgggttaaag ttaagggtcc catgcatggt
      601 acgggaa
//
LOCUS       KCOD01001114             493 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 124418pyr ultra-conserved element
            locus uce-1488, sequence.
ACCESSION   KCOD01001114
VERSION     KCOD01001114.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 493)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 493)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..493
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="124418pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>493
                     /note="ultra-conserved element locus uce-1488"
BASE COUNT          165 a          102 c           89 g          137 t
ORIGIN      
        1 tttctatcca tacttcaaga ggatgtgtgt gtgcacatgc acgtgcctgc acacgcacac
       61 gcttaccctg acttgcaatt aagacaaaat agcaggctgg tgacaaaact cagcaatttc
      121 caattgcacg gtcaccctgt aacgggaaga actgtttacc ccatgttcct tattaaactg
      181 aagtatttta tttaatgagc atgactcatg caaggtgttc ccataaatca tcagctggtt
      241 tacaaactca ataactaggc ttcctgctat aactaggctg tgcacacctt aaattattaa
      301 cacgccaggg ccttaaggca gatctttgat gatgatgata taaacactgt gaggacaagg
      361 tgctctctca gcaaaagatt attgactcta attaccattt accacaggaa aaagaaaaga
      421 aaagacaata aaatatgagg gagaatttaa atctcagatt taattttatg aggagtttta
      481 aactcccaaa ctt
//
LOCUS       KCOD01001115             430 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 124522pyr ultra-conserved element
            locus uce-2850, sequence.
ACCESSION   KCOD01001115
VERSION     KCOD01001115.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 430)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 430)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..430
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="124522pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>430
                     /note="ultra-conserved element locus uce-2850"
BASE COUNT          133 a           85 c           94 g          118 t
ORIGIN      
        1 tgccgggagt acacagacgg gctactaaca tttgcagcca taaataactt agaagctgct
       61 tttaaaaacc gcaggttaaa ggatgagggc tgccatgacg cacacagagg ttgagatcag
      121 aggagcagct aagaggggtc gagagaaaca atgaatcccc ttgttcttag tcatatttat
      181 gagtgctcca ttgcacctaa agttcatatt tattggctag gccatggggt ttccccattt
      241 gctcatctct taaaataaca cccctggtta aaatttccta taaaacacag aaatgctaca
      301 gcaggcagaa cttgtcaacc ctgacaacta cattatttaa gtttgtgggt ggggtacacc
      361 aagcaagagc tggtttgtgt tttgtactga attatgaatg tttctattca aaacatgact
      421 ctaatagaag
//
LOCUS       KCOD01001116             658 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 124631pyr ultra-conserved element
            locus uce-1378, sequence.
ACCESSION   KCOD01001116
VERSION     KCOD01001116.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 658)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 658)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..658
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="124631pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>658
                     /note="ultra-conserved element locus uce-1378"
BASE COUNT          179 a          137 c          101 g          241 t
ORIGIN      
        1 ttatcatcct ttctcaattc aagttccttg tgttaggttg caaaacagga cccactatga
       61 ccaatttgat tattcacttg agccactgta tgatttacag cacgccaccg tgttttgttc
      121 attcttgctc tttccttcgc catctctctg aaaataattg tttcatggct gtatgctctt
      181 attgctgaga tatgactgaa aactgcatgc agtacagtga agcacattca ttttcatcta
      241 gtacccgttt attgccttga gcactgtaaa tctgtcagct cttcacgatg ctttcacctc
      301 tttcttcatt tgctccagct tctagtttga caatgttccc ctgaggcaga attctaatct
      361 gcttccaatt agttgcaaaa tgtgactcaa atttccacat tatggccgaa cacatctaga
      421 aacaaattaa tgctcttgaa tatttatttt tgagccttca gatttagaaa agttgccaac
      481 tacattcaaa ctacgtccaa gattttttct caaactgaaa tattcctttt taaaatgctt
      541 ttcacaaacc gttttcaact ggttggtaat tattgagggt acattgtatt gcgataaatt
      601 aaacaagttt gcaatgcaca taatttttaa atatggatgt gattgctgtg tcagttta
//
LOCUS       KCOD01001117             327 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 124735pyr ultra-conserved element
            locus uce-7191, sequence.
ACCESSION   KCOD01001117
VERSION     KCOD01001117.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 327)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 327)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..327
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="124735pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>327
                     /note="ultra-conserved element locus uce-7191"
BASE COUNT          115 a           61 c           58 g           93 t
ORIGIN      
        1 atctatgctg cagtcctact gtcattgttt gattctgctt aaatccctct gtacctaaag
       61 gtacagcctt atcaattgaa aagctaatgc tatataagaa gtgaaaagaa cacagaaagg
      121 tttcctagca actactgtga atccttctaa agtaagtcag ttaaaaccat gtagtacgtg
      181 caatgggtgt aaattaggga gctaagctga tcctcagatt tacagatgcc cactataaag
      241 tacaataaaa cccgtaatag aaggtgaatt gctcaagaag aaaatcacat cagtcttgac
      301 agctttatca ttatttaaat gatccag
//
LOCUS       KCOD01001118             519 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 124841pyr ultra-conserved element
            locus uce-4990, sequence.
ACCESSION   KCOD01001118
VERSION     KCOD01001118.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 519)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 519)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="124841pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>519
                     /note="ultra-conserved element locus uce-4990"
BASE COUNT          168 a           99 c           99 g          153 t
ORIGIN      
        1 aaatgtagct ctgaacaaaa atggcattgc tttgggtgtt tacagcgctg gagcactgtt
       61 tggtttgtca ctgtgtttaa ccactgctct aaagccagca aagtacatta ctggtagtaa
      121 cagctcatga aaaatacagc gaagaaactg ctagtggcag aagcatttaa ctttcttgtt
      181 agcagcctcc cccatgtggc actttagcac cagcaagttg tttattatgt tctgtgccag
      241 gcaaaactga ttaaatgggg ctcttaagaa tcaaagcgtt ataaattcat ggaaatacag
      301 caagcaataa attccatgga attaaaagct tactagtgct attagcattt cagggtgttt
      361 gcattgttaa tagtgatgtg caaaaatgat gttcctataa gacaaggcaa accgacagaa
      421 catatgcttt agctgctaca tttttatacc atgtcatcat taatggcttt tcctaaaaag
      481 ctcattaata aactgaacca aaccaaggat ttacatccc
//
LOCUS       KCOD01001119             384 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 124949pyr ultra-conserved element
            locus uce-7324, sequence.
ACCESSION   KCOD01001119
VERSION     KCOD01001119.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 384)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 384)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..384
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="124949pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>384
                     /note="ultra-conserved element locus uce-7324"
BASE COUNT          129 a           73 c           66 g          116 t
ORIGIN      
        1 aggccacagg agccccgccc tctacgtccc cagtttacac tggtatatat ttgcttatgt
       61 attacctaat attataggaa gcaacatagg gaagtatatt ttgtgctaaa attgggaatg
      121 cactttcaaa tatacttaac aaggaaattg aatgtcttat taaatccgta ttatcaaaac
      181 actgttcaaa aatttaaaga aagtagcttt tcattttatt catcgaggaa tccattaaag
      241 cctaagctct gaagtagtat gtaaattatg tgcctttcaa ggtagagcta gggcaaattc
      301 actccatcaa ctaatgatga acctcattat gtgcagggag tattcataat gaggaaacaa
      361 gccacccgcc attccatgtt ctaa
//
LOCUS       KCOD01001120             547 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 125057pyr ultra-conserved element
            locus uce-3811, sequence.
ACCESSION   KCOD01001120
VERSION     KCOD01001120.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 547)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 547)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..547
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="125057pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>547
                     /note="ultra-conserved element locus uce-3811"
BASE COUNT          165 a           91 c          105 g          186 t
ORIGIN      
        1 ccatgctggg taatgcttgc taattaccca taacaaaagt agacacacaa tgctggtaaa
       61 ttacctgacc ctttgcattt taatgagaca acaaggattt catgaagtga tgttgtttca
      121 gtggttaatg gtgtcagcaa tgttgtaatt gtaggctgag gcacattagc tgcacaacca
      181 catgtaggca gggtttctct caacaggccc tttggagaat agaactgggt attatcatta
      241 agcctatgtc atttgcatgc tgctaatcac ttactttatt atcttgtgta tccattgtct
      301 ttctttaatt gctctttaaa tgaaaattaa aaatagttcc aatgcccacg atacttgtga
      361 tagcatcttg attatgaaga taacttcaag aaaatggaac atatagataa tgtattgcag
      421 gaatacaaga tagtttgaaa gttatgtacc acagcaggca gcctcatgag tgtaattctg
      481 gtgtctttct ttgcttcact acgtattgtt tgcttaataa atggttattt atattcataa
      541 aggtgat
//
LOCUS       KCOD01001121             738 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 125166pyr ultra-conserved element
            locus uce-660, sequence.
ACCESSION   KCOD01001121
VERSION     KCOD01001121.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 738)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 738)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..738
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="125166pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>738
                     /note="ultra-conserved element locus uce-660"
BASE COUNT          231 a          160 c          124 g          223 t
ORIGIN      
        1 ccacgtactt ctttctttcc tgcaaatatt tctgtggccg agtcaaacag acggacacac
       61 gctaagaaag gggcagtttc taaccatgga ggagaaaatg ttctttactt ttgaggctga
      121 caggtcctca tatgataaac ctgccagaaa tgttacctaa tattgttgtc tgcatcgcaa
      181 tctgtttccc agtaactctg tctgagcagc agtaatagaa ttaattatac ttcattttgc
      241 tgtctttaac agtattgacc aaatttaaga acaaatgaga agcgcttatc aagcttgaag
      301 aaaataatcc atcagtggca caatttaaat tctctgcagt tctcttatta atcaaagtaa
      361 cacttactat cctatcttca cttcccatta acagtcatta agcactgttg ctgattgaag
      421 caatttcttt agggatctca acctcatttt taagagaacc ttctacagtg gaaaacaata
      481 tcatacagga acagcgactt caagagagaa agaaggttct tcaatcatgt tctgaccttg
      541 acacttccct gcagcagaag ttcactaagt acacaaccaa catgctccaa acttctgact
      601 tcattcttcc agcagtacca gtgcccctct attaaccagg gaagaaaaca ccacttcaaa
      661 agatggttat agcaagcagg ttaagtgtct ttaattattg tactggcctg caatggtgat
      721 tattatttat agagcctt
//
LOCUS       KCOD01001122             489 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 125279pyr ultra-conserved element
            locus uce-2388, sequence.
ACCESSION   KCOD01001122
VERSION     KCOD01001122.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 489)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 489)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..489
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="125279pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>489
                     /note="ultra-conserved element locus uce-2388"
BASE COUNT          145 a           96 c           95 g          153 t
ORIGIN      
        1 gttaaacttt gaacttctat ctgaatttcc tgcacagcca ttgtagggta tagatgaaat
       61 tccaaaatcc gttaacaagg aggtacctaa cagaagtact ctctttggaa tcaacaggcg
      121 agaaaattag cagctgccag actaagaggt ttattattta tcttccctgt tgcagtgccc
      181 atgtggcagc actgatattg agcagctgga cagattgcac cctggagcca catctgcagc
      241 tacatagatc aacaccactt tcattgcctc tttatcttct gtcgttagat ttactaccta
      301 cttcatgaat tgttaagggg tttcccttcc cctcctccaa tttgattttg aaaacatatt
      361 actgtagtct gatcattaac agctgattag tcaagtattt gaattaatga ggatttccag
      421 ttgggtttgc aaagatgaat ctggaatggt taagagaata aaaatgattg ctcaatgaaa
      481 ctgggaaat
//
LOCUS       KCOD01001123             838 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 125390pyr ultra-conserved element
            locus uce-3926, sequence.
ACCESSION   KCOD01001123
VERSION     KCOD01001123.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 838)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 838)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..838
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="125390pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>838
                     /note="ultra-conserved element locus uce-3926"
BASE COUNT          262 a          137 c          155 g          284 t
ORIGIN      
        1 tgcacaggaa accagagcag tttctgatct ctcctccacc taaaaaatta gaacatcaaa
       61 accagtttta ccagcaataa atgaagctac tttgaaaagt gaggcaaagg gatctatctg
      121 gagtcagtaa gacattgtta ggatctcttt gatcgggagc cttaaatgaa aattatcaaa
      181 tggcgcttta aaacatacac ccttttgttt gattagcctg ctgcagataa cctttattaa
      241 acctgatcta aaattacagc catgcactgg tggttctttg atgccttggc tgtttcattt
      301 cctgtttata ctatgataca cgttgcacta ggagataaag cacttctgaa ggatattaag
      361 acatgaaagt cccttggcta tttgctggca ctgttttgat gttttcttgc tctctagaaa
      421 ttagcatatc cttttcaaag actgcctctg atgagagtaa tcctttgcca tgatgtattt
      481 gctaaaagtc ataaatgata gtatattgtg taaagaaatg acacataaaa gggacgatgc
      541 tagattattg ataatgaggc aacttgtgca actctgcttt tggcttttat aaaacacatt
      601 tttgacacca taaatacatt gagcttatat taatgaggat ttaatacttc tgagatttta
      661 gaaacttgct tagaacaact tttcaaaaga aggggaagtt taatgttttc actaattttg
      721 ataagatatt ctgttaagca cgttttgctg ccttcataat gaggaatgat ggaaaggttt
      781 ttagcatggc tttgccagaa ttaaactgcg ctggaatatt tattttatta atttgtat
//
LOCUS       KCOD01001124             414 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 125497pyr ultra-conserved element
            locus uce-2086, sequence.
ACCESSION   KCOD01001124
VERSION     KCOD01001124.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 414)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 414)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..414
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="125497pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>414
                     /note="ultra-conserved element locus uce-2086"
BASE COUNT          134 a           66 c           65 g          149 t
ORIGIN      
        1 atatactgtt atggtgttat ttttgtcttt catttttatg acaacttatt tgtacttaaa
       61 ggaatctttc caaagagtta agaagcatca ttaaataaag actgtgaaat gtgcaatatg
      121 gcttatttat ttaaatgtta attggtccaa cgaacacttc taattagctc tatatttgct
      181 tagcaaaaag ttttacaaat tccaattgtg aaaagcagct attttgagct ggtaagcatg
      241 ttgcagaatc agctatgatt tttctatagt tctcagccct tgaaggcaca atttaatttt
      301 tcatgtatgc atactagcaa cggtaaacac ttgcgagtgt aaagaacctt ctttaattag
      361 ctgcacaaca attaaaggat tcacaaacta aattgaaccc tgtctctgtg ctta
//
LOCUS       KCOD01001125             541 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 125606pyr ultra-conserved element
            locus uce-4386, sequence.
ACCESSION   KCOD01001125
VERSION     KCOD01001125.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 541)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 541)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..541
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="125606pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>541
                     /note="ultra-conserved element locus uce-4386"
BASE COUNT          162 a           87 c          104 g          188 t
ORIGIN      
        1 ctcttgtact tttgttgagg ccataagttt catccagatc tttctgtatt ttgtcccagg
       61 catttgtcct actttccttt gacagaagaa tagaccacat ttgtggtatt cctaaattaa
      121 ttatacttct ccaggcttaa aatactgtga cagatcaaca aaacagtagc agaaaactaa
      181 ttccttcaaa aaatatgaaa aaaggaagtt gtgcaagatg gtgtaattaa tcttgcaata
      241 aaaataattg tttacagtta aaattaatgt aacatgcatt cctcagcaga taataaatta
      301 tgggttttct cattagcatt tgaattgatt tcctctaatt tctgaggaac acatgagcat
      361 gtgactagat caagtttaat tggactacag ctggcactga ttgtgtgtgg atagggtggg
      421 ggttttgact gatttggcat cttcctgcat tgtgtttcat tgtctttcct gttcagcctt
      481 ttctgcacag gttataaaaa ggggaaagaa ccttctgaag tatttataga agtggtgtca
      541 g
//
LOCUS       KCOD01001126             550 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 125716pyr ultra-conserved element
            locus uce-507, sequence.
ACCESSION   KCOD01001126
VERSION     KCOD01001126.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 550)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 550)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..550
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="125716pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>550
                     /note="ultra-conserved element locus uce-507"
BASE COUNT          178 a          114 c           84 g          174 t
ORIGIN      
        1 ggagaaaaca ccttatctgc atttctcttc caattccatt tggacaacag tatttcctaa
       61 atgtagccta ttcactgctg gatatgtaat taccttcagt tcatagtcta gacattaatg
      121 ctttcgtagt atttaagact ccttgtaaca tgcttgctgc tttaagtaag caaggctaaa
      181 tcttgaccag ataaattagc aaagaatgca ataaaagctg caataaaaga actttatcct
      241 ccaaaccttc aagttgctgc taaatgagat ttctttgaaa tgcagatcag ttgaactaga
      301 ttagtgaatt ttagctcctg tcaacatcat aacaaaatac aaatacaatt gttcactggc
      361 cttatctcca tgcttccatc tgctgccttg ttatttactt tccttgattt actatgcaga
      421 tctaaataag acacatcaag gagggcttac aacacaatgg cttcttaagc tttacatcaa
      481 ggtatttgaa actgaagccc tgaaagggct gccatcaaag acatatctct aatgaacttc
      541 catatcagag
//
LOCUS       KCOD01001127             592 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 125821pyr ultra-conserved element
            locus uce-128, sequence.
ACCESSION   KCOD01001127
VERSION     KCOD01001127.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 592)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 592)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..592
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="125821pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>592
                     /note="ultra-conserved element locus uce-128"
BASE COUNT          208 a          115 c          105 g          164 t
ORIGIN      
        1 gagaaaacat cagttgcttc tttgacaatt ttgccattca ctgatttact tctaatgaag
       61 acgcactcca accagccagc tcgaaaggtc aaagcaaatg cctcacaaaa tcaaggcaaa
      121 tgggaaaccc gtaaagaaac cttctcataa agtgccgtgg caattaaaaa gccgtcttca
      181 gtaaaaagta aaagaaatta agctgccact actgtaacag gttagatgaa aatcaaaatt
      241 taatgtattc tcccttgtgt catcttgttt tgtcaagaca tcaaatagaa ttggaaagta
      301 caaaataaca agcccttgag aaatcacaga agccgacctt tttgatgttg ttggtttacc
      361 ttgttctcag ttatttgaac aatgatgttt cagatttaag ggcaagataa agcttaaaaa
      421 ttaaaaagtt tggggaggat tgtccctccc aaataacaga gcatctatca atgaaggcaa
      481 atccgtccga aactagtaca cagaacaatt agcaattcca cttatttgtt cattattcag
      541 tctggattct ctaacattcc tgctagcgca gtaaacagtg ctggaaaggt ta
//
LOCUS       KCOD01001128             557 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 125929pyr ultra-conserved element
            locus uce-7872, sequence.
ACCESSION   KCOD01001128
VERSION     KCOD01001128.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 557)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 557)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..557
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="125929pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>557
                     /note="ultra-conserved element locus uce-7872"
BASE COUNT          175 a           98 c          116 g          168 t
ORIGIN      
        1 gagagtttgt ggcatggagg tctgagtaag aggaactgta ctttccattg catcaccgac
       61 gtttcagccc ggagccccac atctcataag ctgctttgag cctgtgcagt tctcagagta
      121 aaagggatta aaaataaata ttaaagcacg taagaattaa atatcaccta ttcaaatagc
      181 aattatgccg ttgaaaacaa gatcaccaca cctgtacaag aaaagacaac caagcctaaa
      241 acatctgttt ggatccacct gccaagcacc tgttccgctg tttcaatgcc atttgattgc
      301 tggagatgta gaggctcttg tgaggtaatg agtgatttta cattatgcat gattgaaaac
      361 aggtgttcta atgctgtaca attctatgca tgaataattc agtttgttta gagcaagatc
      421 tttaaaagaa atatggtctt taataaatat taaggttatt ctctgcgatg tatggtggct
      481 ggtcttttca gcaggctcac tgatgaccat ttttgtataa ttttatgggt aggaaataac
      541 accgtgaaag gtaatta
//
LOCUS       KCOD01001129             479 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 126039pyr ultra-conserved element
            locus uce-3891, sequence.
ACCESSION   KCOD01001129
VERSION     KCOD01001129.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 479)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 479)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..479
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="126039pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>479
                     /note="ultra-conserved element locus uce-3891"
BASE COUNT          154 a          110 c           82 g          133 t
ORIGIN      
        1 agaaagggct tttgaaagca tgacccatca gttctaattt ttaaaactta tcctttcagt
       61 caagactaga aaaaggccca ttccaacttt tatctccact acaaagtgct gttatcttgg
      121 gctgttgtca ggagctctct ctctctttct gctgacaagc agagactaga gagataagat
      181 tgggaacgaa tctcacttct ctgagtaaat aaataatcaa tactcatcta aatgtaaatg
      241 agaaagtatc cccctctgat aacagggctc ttatcaaaca gccaattttc tgcagacatt
      301 tggcctcaac caaatcacca tcattcagcc ccagcctaat ggctaaaaat cgtaactaaa
      361 ttgaaccgat caccagagat caactaagtt cagccatggc tactatgggt tcaaatgttt
      421 ggaatgcaat ttttccccca ttaactttca atagcaatga agaatgccac ggtcagggg
//
LOCUS       KCOD01001130             766 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 126149pyr ultra-conserved element
            locus uce-3331, sequence.
ACCESSION   KCOD01001130
VERSION     KCOD01001130.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 766)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 766)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..766
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="126149pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>766
                     /note="ultra-conserved element locus uce-3331"
BASE COUNT          239 a          113 c          148 g          266 t
ORIGIN      
        1 ttcaatgaag agtaaaagga gcagtctccc tgcatataat gcattgaaat accaattgtc
       61 tgccactttt cggcaaccta gcattgttaa attgcctttt aatcactatg tttgatattt
      121 gatatgtagc agtaaaatgt ttatactgtg aattgtacag taaaccttca gtttaggagc
      181 aaattaatag tctggaaccg tgagaatctg actgtatctg aatattgatg atctcacttt
      241 ctgagtctct ctgggattgg gggtgcgagg tgttgatcat tgcttctcac tgataagcaa
      301 aatatttcca gagcgtgaag aattctgtgg tgtgtgagaa ggataaacca taatctgcat
      361 caacacacta acttctcctc tgccatttgc attgaaaatc aggtagaagt tatgctaagc
      421 tctctattat agcctcatgt atgtgaaagg tcttcccctt catttgaata aggcctctta
      481 tgcacacatt taaaaggaag gttcctttaa ttagggtggc atttagaatt cttaaatgtt
      541 cactttttgt gatgctaaat tgtggagtat tttcaaatat gttgtagtag tcattttcat
      601 tagccacttt tatttttatt tatttttaaa aggaaatgac atgctctaca atctgaagtg
      661 aaggagtaga ttaatatgac tagctagatt aaggaaaatt taaatcagag tgtttgatga
      721 aatgtaggaa aatgtttaaa tataggatta gacttacaat atagaa
//
LOCUS       KCOD01001131             568 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 126261pyr ultra-conserved element
            locus uce-4902, sequence.
ACCESSION   KCOD01001131
VERSION     KCOD01001131.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 568)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 568)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="126261pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>568
                     /note="ultra-conserved element locus uce-4902"
BASE COUNT          188 a           81 c          102 g          197 t
ORIGIN      
        1 aagttgccat cttaatgtaa ctgctagtaa atatagcagc tattttataa gtattgctgt
       61 cattttcttt gactaaagtt acagaaattc tttgaatttt atatagggga ctaaatttgt
      121 aatggaaaat gatgtttgat ggtgtttaaa tgcagagtat gtcactgtat aaagcgtagg
      181 gctcttttaa gttatttttt ttaacttctt gacatgtgtc acaatttgga attctgctct
      241 catgggataa atgccagatt acatggtgta gtatttttat cctctgtact ttcactgtag
      301 aagcatacaa catcaaagaa gaggcagatc actcacatca gcagaaaatg gaataggact
      361 ataatatgct tgctttgatc tctccttcta ataattatct tggctacatg catacattga
      421 aagtaagatt tgaattaata aggccaagag accctggaaa atgtaagaag gatatctgaa
      481 tactaacttt gactatcttt aacaagataa actgcaattg agcctacaaa gttgtggatt
      541 gttaatttaa ggcaataatc cttaaatg
//
LOCUS       KCOD01001132             754 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 126356pyr ultra-conserved element
            locus uce-378, sequence.
ACCESSION   KCOD01001132
VERSION     KCOD01001132.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 754)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 754)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..754
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="126356pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>754
                     /note="ultra-conserved element locus uce-378"
BASE COUNT          237 a          126 c          125 g          266 t
ORIGIN      
        1 ttctgttggt ttaaggcaat ttcaacacaa ttttttgtag ctttaatgca atgtgggttt
       61 tttcccaaaa tgctggtgaa tacacaaatg cataaatttt tttttttggt tccctaagac
      121 tccttatttt ttcatagctt cagcagttaa ttatgtcatc aagataagag aaatcaaatg
      181 aagccagaag gaaggcaaag gacaacaaga ataagaaaga tggaatctgt cacaagcttg
      241 aattatgaat ataattatgc atgattattt tatactgcaa agatgttccc tttttctgca
      301 catttataac taatctaaat aagtagcttg ccggcagaca acgtatttca tgatttatat
      361 aaaatggtcg agataaggtt cacgactgaa ggaaatatga ttggaggatt tttatcagcc
      421 tctgcatgaa ttactgtttg aaaatgctta tgcaggagca tttcattaat catttaatca
      481 taatcctagc aggatgtttg aactgatttc acaaataccc tttcatttca ctacttcatt
      541 atgctcgcta atggatccaa tatattatat atatcataaa ttatatcaca tcttcactga
      601 ccatgtaggt cactgtcact aagcattcct ccgtgcttag cttggtagtt tagcaaatgt
      661 tgctccagct tacttttgga attccacttt ttgccattta ctgaaatttg aagttttctt
      721 atcggtcagc gggggtctta attaaaagaa aact
//
LOCUS       KCOD01001133             552 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 126454pyr ultra-conserved element
            locus uce-3901, sequence.
ACCESSION   KCOD01001133
VERSION     KCOD01001133.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 552)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 552)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..552
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="126454pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>552
                     /note="ultra-conserved element locus uce-3901"
BASE COUNT          185 a           85 c           83 g          199 t
ORIGIN      
        1 aagattacaa gttatttctg gaccaaaatg tcacatataa gtacttttaa acattctagt
       61 tgtgtgacat tgtgatgaga caaaaagctc ctgagctgca ttttaataag catagaatct
      121 tttaaattta tcataaattt atatgtacag atttaaaatt tatacctggg gactttaata
      181 tcacacaatt catgttcaga tgtcattgaa catgtaattg tttctacatt tcacattatg
      241 ctgtactttc agattgtact ataaatcttt tgtgaccatg acggttattt cggaatgttg
      301 ctaacactga tttatgctca ttcatgttac tttaatttga acatactatt tccaaagcat
      361 ccacttaatg cagctggtac ttagaaagac atgaatatcc cataagttaa aaatttttac
      421 atttcaatta caacagcttt acaggaagtg gaacattttc cagtagatta aattgtaatc
      481 acaaaggtgt attaaatcat ttgtcagtaa gttatgcatt aacgtgtctg tctttgaaag
      541 gtgaggaacc ca
//
LOCUS       KCOD01001134             688 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 126563pyr ultra-conserved element
            locus uce-7462, sequence.
ACCESSION   KCOD01001134
VERSION     KCOD01001134.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 688)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="126563pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>688
                     /note="ultra-conserved element locus uce-7462"
BASE COUNT          236 a          113 c          134 g          205 t
ORIGIN      
        1 aatgggtatg attttagaca agtaataaaa gagaaggtta actttatctg gtctcagagt
       61 tgccgtgtat tcatgtgaaa ttacagtgtg ttaaataatt gcacaaagta taggccagtt
      121 ttaatgacta tactttatgc caaaaataca ttccttttca cagaataagc aaagcccagg
      181 aaatagtgaa gcagcttagc atctattcta acaaacatta ggattcaggc tgcatacgga
      241 tgggacagga ccaacaggat ttccaactta atgtaatagc tgtgcgtatt tgattactta
      301 ggacggacaa aatgaaatac cataaggacc acaataaaca ttgatagact gaacaaaaac
      361 acggtagtga cgtgcttcaa gacagatagc agagagtgat tttttgtgac aatctcccta
      421 aggcttttgt gctgttacct ttatatccta tcttgtctgc ttttatggcc aaggagggaa
      481 aatttgggaa acaattaaca taatttaata tatccaaaat cgataattgt tttcagtcta
      541 acattgcatt cagtatctgt cacttcttag tgatgaaatc tggcatgcag ccaaaatgat
      601 ctgtatgagg atgacaacgc tataaatatg tagatttcgg tgttccttat ctatgactat
      661 gataagacac tgacagaagc aagtacag
//
LOCUS       KCOD01001135             556 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 126673pyr ultra-conserved element
            locus uce-3603, sequence.
ACCESSION   KCOD01001135
VERSION     KCOD01001135.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 556)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 556)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..556
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="126673pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>556
                     /note="ultra-conserved element locus uce-3603"
BASE COUNT          172 a          101 c          102 g          181 t
ORIGIN      
        1 ttgtgtttct gaacaagcaa taaggctcca gccttagctg agaatagctg ggattttgga
       61 actcgctgtt ttctcttgga agatggatta aattgatcat tttttcctag acagagtgca
      121 cttcaggctc attttgcttt gtaattaaga agaaagccag aaacatcatt tacacattaa
      181 gaatttaata gatatatttt tctagcttta tgcattagca caggacagcc cattaatgaa
      241 ataagtcttc cttcagggtc aatttagatg ggctgtaatc ttctgcaaat atattgcaaa
      301 tgaggatcat ttaatgatct taaaactaac tgccagaaaa ggattgttat aactctccag
      361 acaacaaaaa gaggttttgg catgacttgc agtacctttg taattagcaa atgtttaatt
      421 tcaacccacc agatcataaa atttaaaata ttatcttctg tagaggtcag cttcagactc
      481 tgtgacctgg ggtgttaatt ctgagaaacc tgaggttgtg tttgtcactc aatgcaacag
      541 ctccagctcc ctactc
//
LOCUS       KCOD01001136             597 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 126782pyr ultra-conserved element
            locus uce-1285, sequence.
ACCESSION   KCOD01001136
VERSION     KCOD01001136.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 597)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 597)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..597
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="126782pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>597
                     /note="ultra-conserved element locus uce-1285"
BASE COUNT          160 a          163 c          110 g          164 t
ORIGIN      
        1 tttatttatt tattttttgc tttgggcacc agctagttct gggccacaag gggttaacca
       61 caaaagctgc tttctttgcc ttcactctac ctcaatttcc actgctccca tcaccttcct
      121 cccccacccc ctgatcttat gaaaaaaacc catcaaaata actattttat gtctccaaat
      181 atgcagatca ttttctttaa tgaaagatgc ttgacgtctc cgatccaatt aatatgcaaa
      241 tgcaggcgag gatttatttg tgacattctg tctgggtgag agaaaacaaa aaaggcctgt
      301 taaccaaaac actaattgct gtgactgatt gtcacatatc atcattttca taggatctcc
      361 tccatccctg gcttgcaggg agctgtgaac caggactcgg agactagcag acaccaagga
      421 gaaacagggc aaccagctac ctgcctggca cgctcggata agccaaggcc ttcttcccac
      481 tgcccctcca gcttgcatcc ctccccagcc caaccagcag agatactcgg aagcagcttt
      541 ttctgggtaa gatactctgt taccccacaa aagtcaggag ttaccagtgt tggtctt
//
LOCUS       KCOD01001137             155 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 126882pyr ultra-conserved element
            locus uce-6218, sequence.
ACCESSION   KCOD01001137
VERSION     KCOD01001137.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 155)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 155)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..155
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="126882pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>155
                     /note="ultra-conserved element locus uce-6218"
BASE COUNT           35 a           39 c           44 g           37 t
ORIGIN      
        1 cacagctgcc ttcagcagga attgcagggc ccagtgctca cctgaagcgt ttaaggtgca
       61 gccggaggac ctgaggtagt ctgtagatca gcaactgctt tttagcttcg ctcagaacaa
      121 gaggtttagg agaagacttt cgccgtttgc ctgcc
//
LOCUS       KCOD01001138             721 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 126991pyr ultra-conserved element
            locus uce-2109, sequence.
ACCESSION   KCOD01001138
VERSION     KCOD01001138.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 721)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 721)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..721
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="126991pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>721
                     /note="ultra-conserved element locus uce-2109"
BASE COUNT          216 a          135 c          126 g          244 t
ORIGIN      
        1 tttatctctc ttgttgtgga gatcaatcta tgccattttt ctccttttat agccttattt
       61 ttccttcttt gtccagcatt atcaaaccat gacacaaatt cagttatgat gttgtgatgc
      121 caaacctgag gtcctggcaa aatgtatcat gcagcatatc taggtaagtg aattaaaaaa
      181 gcatctgagc aggtatctgg tgtgtgtcac cgttcattct tccataataa actatgttct
      241 tattctcatt catttgtcaa tcacagtaac taaaggttat tatgtgctgt atgtacgtga
      301 caccagcaat ttgcaaagtc tgttggaaag aaaatcaggt tagaatgaca gagtgagaaa
      361 ttaaacagaa gtctgatgta attagctata acaatcagtg ctctaatttc tgatttattg
      421 tttcctgttt tcctgctgct ttcagtccat gcatactgta tgtgcttcat ataggtcaaa
      481 caattgtctt atcagtcctg gcaaagcaag aggtcagagt taacaatatt tatttaaaca
      541 tgcaggatgc ttcccactgc aattaggaaa taactattag taatagatct ttggtgctgt
      601 ttcctcattt acaagataaa ggcaataggg acaggcttct tcataaatat atcttgcaga
      661 tagatttact tgacgtttgt tgaactgacc acactgccca ccaaatgaca acctgacaac
      721 a
//
LOCUS       KCOD01001139             424 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 127299pyr ultra-conserved element
            locus uce-7490, sequence.
ACCESSION   KCOD01001139
VERSION     KCOD01001139.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 424)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 424)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..424
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="127299pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>424
                     /note="ultra-conserved element locus uce-7490"
BASE COUNT          140 a           74 c           72 g          138 t
ORIGIN      
        1 gcagtggagg gagaaatgtt attggttttc tcagaaggat tttcttttat acatagcttt
       61 atcctataat tttgtccctg ttgggcacac tgcctaaatt taaacacaaa cagtcaagca
      121 atgaagaaac attaccacat ttactgtgaa caaaaactcc cagttgtaca gtgaaatttt
      181 aatacatttc aacttatctc ttttactaat ggggagagta caaaccctgc aggaattcgc
      241 tctgcaaact ggtaattaca gtagactcac ttttttataa tgcatatgta tagtcagaca
      301 caagaaacat agctgccctt ttgatgtagg ttacaatagg aatgtttatg aaaacctcct
      361 gcaattctaa aggaatgcat tatttcatgg gaagttgttc tttagctata ctaaatagta
      421 caat
//
LOCUS       KCOD01001140             831 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 127507pyr ultra-conserved element
            locus uce-7801, sequence.
ACCESSION   KCOD01001140
VERSION     KCOD01001140.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 831)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 831)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..831
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="127507pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>831
                     /note="ultra-conserved element locus uce-7801"
BASE COUNT          266 a          127 c          171 g          267 t
ORIGIN      
        1 gatgtttcac tgcttctgtc tgacataaac taatgatgta gactggctaa acctggtgac
       61 atgattaaac agtgatgtta attagtggct tctgtgagag acttgactcc tttagcagta
      121 tttgttatgc atatacccaa gttaaaagga atttttacag catctgttaa tagcattaag
      181 agttcagaaa aagcatttaa attatttggt aaagctcata aggtccatct tcatgccctg
      241 tggttgtgca aagacaatat ctttgtgtga agggaaatgg caattttctg caggcagtaa
      301 tcatctgtac tattacttag atgtcatgta ttgatgatcc tatttcaatc aaacatatct
      361 cattcagaga gcttttgatg ggaggaattt ttggaagggt ttaggaaggt taaatctgcg
      421 agacatggct tccatctgga atgcattagc tacaaagatt tattagccag agtgcctctg
      481 cataatgttc catggaaagc aaagccctgc atctaatttc cagcatgatg tctatatgag
      541 aagtgatctt tgaaatatca taggtgacaa tcaagtttgt tataaaaata gtaaatgcac
      601 aggattttca tggcagctat tttaaatccc tcatgagggc tgctaagcag gtagttgatt
      661 tgttgacaaa tgataaaact gtagaaatag caacatgcat gacattttta aacaggatag
      721 actctaagca gtaagagtca catcaggaaa attatcaaca tttagtggtt gcttaactct
      781 gtgaaggatg gcattaggaa ataatagagg caatatttaa ctttctgttt c
//
LOCUS       KCOD01001141             699 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 127618pyr ultra-conserved element
            locus uce-7521, sequence.
ACCESSION   KCOD01001141
VERSION     KCOD01001141.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 699)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 699)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="127618pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>699
                     /note="ultra-conserved element locus uce-7521"
BASE COUNT          217 a          112 c          123 g          247 t
ORIGIN      
        1 aaactggtgc ttctggtgtc aactacagta atgaaatgaa catgtaaagg aatcaggtcc
       61 ttgctcatta aattcaaaag catattatta tttggcttta aaccggttta gttaaagctg
      121 aaatcaaatt tatacagctt tcagaaagtt actggaacta aagtagttgg tgatgtaatg
      181 tatgaagtca aagagtgttt tgctatgctg gagaaaacta atggaaacat tcacttgggg
      241 taagacaaat ggtattaaat gagaaaacac accatgaatt gcaaatggag ctgagttaat
      301 ttgttgctac agtagtgttg ccctactgtt aaatgaaggc tgtgtaatta tcttgctggc
      361 agagataatg tcaaaacctc atttctcctt acatgcctca tttttacatg agggctaatt
      421 gagctgcaag gtgacaactg attatatata gctatcatca ggtcctcttg ctcaatttgc
      481 aaataatgtt atctttttta agtgatgatt tttatcacat gtcaaattaa ggcattaaaa
      541 aaacttttta aagctatttt agttttgtag cattgcattt ctgtcaccat tttatttata
      601 ttaattcttc ctccaagatt cttgccatcc atttacttac cgtcccttta tttaaagcag
      661 agagtgctag ttactttttc atgcctcttg atcatcatg
//
LOCUS       KCOD01001142             749 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 127728pyr ultra-conserved element
            locus uce-710, sequence.
ACCESSION   KCOD01001142
VERSION     KCOD01001142.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 749)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 749)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..749
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="127728pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>749
                     /note="ultra-conserved element locus uce-710"
BASE COUNT          253 a          157 c          130 g          209 t
ORIGIN      
        1 gaatgtttca aatggagaac acaaagaaaa gagagaagtg atcattgagc aaatcattct
       61 gcataagtta ccatctattt tccatgaaac acagggtaaa gcatgttaat gtaaagtaca
      121 gatattgcaa cgcagtgtag tcttacactg tgcagggaga gcccagcagt ctgcggcagc
      181 ctgaaaccgt gcacaagtgc ttacagctgc agtgacatgg tgctaagcat gttttaagac
      241 tagtcccagt cgagcggcat cttatccaac cagaaacaat cccacaatcc agctcttttt
      301 aagtgatcat ccttgtatca taacagattt aggttgcagc tactttggat tatggttaat
      361 ctaaccttta tccattcaca tcttcacctg aaacttacaa ggaccaagag tcaattgcca
      421 gggcataatt cacaatgaca ctgatctctc cttcctcact ctaattatct ggattaagaa
      481 taacactttt gagtaattat tttcacattg gataaacatt aagctttcct ggatttatct
      541 gagctttttc ttaacatgaa atagatccga gcaggcttat aagaacataa ctgacagcag
      601 tgacagctta atcaaggaaa ccctaaacaa ctaaaacaat aggaaatgtt tgtttcacat
      661 tgttttgaat aatcaagagc cagtaacttg ataacccact ggcaaactat ctactcatag
      721 accaaagcaa tatccaggca tatcaatta
//
LOCUS       KCOD01001143             617 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 127839pyr ultra-conserved element
            locus uce-5710, sequence.
ACCESSION   KCOD01001143
VERSION     KCOD01001143.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 617)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 617)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="127839pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>617
                     /note="ultra-conserved element locus uce-5710"
BASE COUNT          209 a          117 c          115 g          176 t
ORIGIN      
        1 tgacacaggc tgcacctgaa tccaatcact ccttgggctc tgagaagatt cacacgcaag
       61 gactaaatct gtcacaaatg ggttggtttc cgatcctcct gtagccgcct tgctttattc
      121 tgacccccat ttaacaaatc aacttaatgg gcactgggag tgctataaaa cttaacaatg
      181 gagtgatttt aacttctaaa atatagttat gaagcaaaat gttggagagc tccttcaata
      241 ctggaaatca aattaaaact agacattttt taacagtctt gacagatata atcctagtta
      301 ccatgtaaat ttatggtaag ctgctgtgat attagccaca ggtgctactt ttaatatatg
      361 gcttgcatct ggctgggaat aaaatatctc aagaggactg aaaatgacct cactatcaga
      421 caatggagaa gacacaagac cgctgtggca tataaaaagc tggagctgtg gtccacaact
      481 gaatatttac cataaaattc attttaactc tgcagattgt aagttaaagg atattatgtt
      541 ttcaatgcat aaaaggcgtg gacctttttt agacaaacag ccaaaagaat aaagtggcaa
      601 aaatacactg cctatat
//
LOCUS       KCOD01001144             419 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 127948pyr ultra-conserved element
            locus uce-7033, sequence.
ACCESSION   KCOD01001144
VERSION     KCOD01001144.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 419)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 419)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="127948pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>419
                     /note="ultra-conserved element locus uce-7033"
BASE COUNT          124 a           82 c           82 g          131 t
ORIGIN      
        1 tgagggctca cttatctgag ttacagcata ttccataaac gtgattgtgc cctaatgata
       61 tcactgtcct ttagcaaagc cctggggcca cgcagagtgt tcaatgccgt ggacagcagc
      121 tcatgttttg cacactgcct aaggcctaaa taggcctttc atatacaggc cagatgttca
      181 gtctttctta ggccagctta aggctagaac aaaccttttc aaccagggtt tatcagagtt
      241 tctaaattac atgctgggaa gaaatttaat tggtttaatt aagaaagttt atttcatggt
      301 aattcagttt tgttatgctg caagacttaa tgtgtcctct gataggagtg atttgttata
      361 aatattcata gcaatcctct tctcatccaa gccaaaaaaa tcaaatagga agttgcaaa
//
LOCUS       KCOD01001145             622 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 128057pyr ultra-conserved element
            locus uce-7269, sequence.
ACCESSION   KCOD01001145
VERSION     KCOD01001145.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 622)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 622)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="128057pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>622
                     /note="ultra-conserved element locus uce-7269"
BASE COUNT          215 a          112 c          109 g          186 t
ORIGIN      
        1 ttttcagcat ttttttttta atcttccttc taaaatgata atgaaataag ataaaataaa
       61 aaaaatatta acttaaaagc aaagcaggag agaaaccaat tctgtttcca ctgctgctaa
      121 ttttaatgcc acccattgtt cagctctgca gtctaatttt atgttaatat cctgaaagtt
      181 gtcaaatctt ggcaaaacct atgcataaat tacacagaaa gtagctcgca ggagggggaa
      241 agtaatgact gtcatggtta gccaaaccca ttaatagtct gacaagcaat aacccaagag
      301 ctctggtcaa ctgctgcaga catctgtgaa acttttgcaa ttaatttttt ttggaggagg
      361 tatcagctgt gaaatagcac ataagtgact gattattatc agctctgctg gtgagggcag
      421 aactgatcaa ctccaagcat tcatccttcc accacattat tggtttacaa ataaaaagtt
      481 ttagaggcac tctaatctcc agaaagggaa aaggaggagt aattgtacat gagtagcact
      541 tatacataat ctttcatatc agcagtttcc aaagaacttt acagaggtca ttagccttat
      601 ctctgtctat aaagtgaaga aa
//
LOCUS       KCOD01001146             477 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 128161pyr ultra-conserved element
            locus uce-4542, sequence.
ACCESSION   KCOD01001146
VERSION     KCOD01001146.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 477)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 477)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..477
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="128161pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>477
                     /note="ultra-conserved element locus uce-4542"
BASE COUNT          167 a           80 c           87 g          143 t
ORIGIN      
        1 gggctgaaat ctgtttctca acttcgtaac atttaaatat caaaaacttt gttttctaat
       61 gagcgaagta ttgagggggg agaaatgaat tatatgcttg atgtatactg aaggctggga
      121 aaattaaggc catttcccat ggtgagaatg cagtgatttc agtttgcgag aataaattaa
      181 acctttggga aaatttgtct tccattaaat tgaacagcta aacaggcaca gaagatttta
      241 atgtcaccac cagcaaaccc caaaggttgt gaaaagaaac agtgttttct gtttggaagt
      301 tctctctacc taagaaaaga tgcaaactgt aaatgtatgt tgagacacaa agactcttaa
      361 agatcataat tccattccta taccatatgc tattaatgtc tgtcaacact gtttagccag
      421 caactgctga cagaaccata tttgctatct aaatacatca taaataaatc agtaatg
//
LOCUS       KCOD01001147             577 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 128269pyr ultra-conserved element
            locus uce-1698, sequence.
ACCESSION   KCOD01001147
VERSION     KCOD01001147.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 577)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 577)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..577
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="128269pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>577
                     /note="ultra-conserved element locus uce-1698"
BASE COUNT          194 a          120 c          110 g          153 t
ORIGIN      
        1 tgcctgcaca cggggtaacc tcttaagaaa atccactgtt gaaataaaca acaactctca
       61 acaaatgatc aaagaagaaa taaatctttt acccttcttt ttaaaactga aatcccattt
      121 tttaactgga taacagttaa gaggctaccg gccacctatt tctctgggag ctacgtttgc
      181 cgcatggatg cagacaaatg aaaagctttt aaaataaagt ttgtgtaaaa catattgttt
      241 ggaatttaag ttctaatatc taggactaaa cagagcatta aatcaagcaa aactgtgaca
      301 aggccaatat gcacatggat gatgccagcg aggcatctcc agccctttgt tcacagctta
      361 acaaaactgt gccgtcacac cactttagct caacagtgcc tgtcgaatgg gcatcagcag
      421 atcagccaat gcctgtcaca cacacagctg aaaaactgtt tgaaagcaag gcttacttta
      481 gcacaagtct ggtaggaaaa gtgagaggga tttttaatca tctggtaacg actacagata
      541 tatatttaac acagtcttgc tcgagggaat gggtctt
//
LOCUS       KCOD01001148             590 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 128375pyr ultra-conserved element
            locus uce-2223, sequence.
ACCESSION   KCOD01001148
VERSION     KCOD01001148.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 590)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 590)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..590
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="128375pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>590
                     /note="ultra-conserved element locus uce-2223"
BASE COUNT          186 a          127 c          124 g          153 t
ORIGIN      
        1 gagagagaaa aaaagagcaa gagagacaga cggagagagg gagagagagt gcaccaggaa
       61 ttatctatgc ataaagaaat taaaagagaa tatttttcca gagcaattga agcccatctc
      121 ctgaacaatg acgacagctc ctcattttcg acaacaatag agggcacgta ggagtcagct
      181 cattagaata tctgtggctc ttttctgttc tctttgcatt aagcccccat aatgtcagtt
      241 gtcacttatt aatgacaatt aactagtaat cagcagtgag actcttcgag gtggtccttg
      301 cctgacaggt gaagaaagag aacattgcgt agtgccatgc agtgacatgg aaccttcaaa
      361 gggagcacgg catttccata aattatttca gaaagaaatt ttcttttaga catcctcttt
      421 aaagcattag gatctttaac cctagaagga ctatacggtt gcagctgtcc tccctccccc
      481 ctccccttat cactagtatt ggataaaatt ggaaggcagc ctgatctgtc atgtaaccca
      541 attcccatct ggggctggaa tagctatcaa cccactctgc tgaaactata
//
LOCUS       KCOD01001149             708 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 128481pyr ultra-conserved element
            locus uce-2477, sequence.
ACCESSION   KCOD01001149
VERSION     KCOD01001149.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 708)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 708)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..708
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="128481pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>708
                     /note="ultra-conserved element locus uce-2477"
BASE COUNT          205 a          155 c          126 g          222 t
ORIGIN      
        1 aacaagaaca acctctgtgc ttctagcagg ttgaatgata acccttaaag gcatcccatt
       61 aaaagccaac aaaaagattc ttcacctctt tctcttctct cctctatccc cttaaaatga
      121 atcctgcaaa ttattaagca acgctggcaa ttggagaacg aagcagcttg catgtgggta
      181 tattttcaca gtgattctaa tctgagaaat ttacttgctc ttccccttct atctgataaa
      241 ctatacattc aagcgttctc attagtgttt ggatcaccaa agagagctgg agatgaatca
      301 gtccatccac ccctcctctc cctgctctgt tgagattatt tcattgaaat gttcattttc
      361 atccctgctg gcaacattag aatggaagta tttaacctgt ttccattact tatacaaatt
      421 accattatgg ggtaggacag atgttagaat catgccacat aactgacttc catacattct
      481 ttacggggag gataagaaga aggaaagctg ttagatcata ttatccaggc tcaataatgt
      541 tctctctcct cccagattca ttaacttcca acatcaacgt ttccctttct ttctgtgtga
      601 aaatgctcgg tctccttgag ctcatttaat ttggagcagg aaatctttgt cagaaataat
      661 tttttgatca ggtgctctaa ctaaggggcg aagggggtgg ggaaagaa
//
LOCUS       KCOD01001150             726 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 128589pyr ultra-conserved element
            locus uce-1360, sequence.
ACCESSION   KCOD01001150
VERSION     KCOD01001150.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 726)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 726)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..726
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="128589pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>726
                     /note="ultra-conserved element locus uce-1360"
BASE COUNT          226 a          139 c          128 g          233 t
ORIGIN      
        1 tttttattat ttgaaatggg tgctcactac tgcagtagaa atcagggatc cttattgtta
       61 ctaatgaaga aaatgataac agacatggct gaagcactat tattcccctt tctctcttct
      121 tgctgtcctc actgttattt acattgatgt gaattgcaag taaaccaata ttatccatct
      181 ctctgcttta atttgttgac tttaataagt cttaaataag cgcttactga agatgaagta
      241 agatatgcaa gcaagtagtc cttttatcaa caattttgcc acagaaacac acaaacattt
      301 caatggctct tcattagcaa acaaatcaac aagtgatatt ttaatgcatg actttattcc
      361 atctctgtgg ggactgtagt tgagagtgtg atgtacagta cagagaaagg aatcatcagc
      421 cacaatgtcc cagggctcta tccattgagg acttctcagc ctctgcttaa agagtgcatt
      481 taattgactg atagacagta gcttctttgt tcacagaaga cagcgaagta atggcagctt
      541 gaaaatcgta ccatctacag gatctcctga gactagtaac agggggatat gtgtcaggaa
      601 taaataaata atctaattat taagccactt cctgtcaagt taactccaat ttgttggctt
      661 ttgaaggcaa caaaacgagg catttttcct cattatgctt ctctttttat accactggta
      721 atcaca
//
LOCUS       KCOD01001151             852 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 128698pyr ultra-conserved element
            locus uce-1822, sequence.
ACCESSION   KCOD01001151
VERSION     KCOD01001151.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 852)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 852)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..852
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="128698pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>852
                     /note="ultra-conserved element locus uce-1822"
BASE COUNT          239 a          157 c          156 g          300 t
ORIGIN      
        1 attcggcatg tggtatgctg tgcttttcca gcaggctgct ttttgtcatt atctctccac
       61 ccaagtgaat gttcaggatg ggcatgttct ttcttcaatt attgcagaga actaaaatgt
      121 aagcaataaa tgctaaagcc agatttttct aatacaaaaa atcaagcctt tgtgttctca
      181 tataattatt ctgaaagtgt tgcaagccgg gaaataaaat actgtgtctt aaaatatgaa
      241 acaatgtttt ctttcaggat aaggataaga atgtgattta agtttgcttt agcccatttc
      301 ttcactgtgt tgtgctgaca tgattgttca aagaaattgt gcttttggaa ggaaaaggtt
      361 aaagtttgct actgatattc atcaggagat ggatatttaa tctttaatct cttgttctag
      421 gcccctactt cggatcaact cattatcccg aataaacgat gtgtcattcc cattatttat
      481 gtttcactgc agccaaagta tctggacctc gttttggtaa gcaccattca tttcgaccca
      541 ttcagtatta atctcccttc taacatcttt cctgtcctat gtgctgtccc ctatttgctt
      601 ttatgttttc cgcagagtgt ttataaaagg ataatctttt acaaagcaga cagaattttt
      661 gtgtataaac tgctctgttt gaatgcctca ttgatatacc atctaaactg aagtgttcag
      721 caagattagt gcatccactg agccactgaa ctgggtaaaa atatgggaac tgctcctttc
      781 tttatagcga gagagggtag ctaatgatgc catcttcttt taaataggat acttttagca
      841 gatggactct ga
//
LOCUS       KCOD01001152             785 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 128811pyr ultra-conserved element
            locus uce-4607, sequence.
ACCESSION   KCOD01001152
VERSION     KCOD01001152.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 785)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 785)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..785
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="128811pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>785
                     /note="ultra-conserved element locus uce-4607"
BASE COUNT          275 a          152 c          168 g          190 t
ORIGIN      
        1 agcatctgtt tctctcagat cacgaaggac ttacattgcc acgccaaaga attcgtgttt
       61 agctgtggag atgacaacat cggctgtgca cagagctcgg aaatagtcat ccttgctggg
      121 caagtacccc cagtgcaaga cggacgatcc caacactttc ctggcctctg aaaagatatc
      181 tttaacagga gaaagagaaa agtcatctat ttaatatggt gcaaaatgat ataagatgtc
      241 agcagtgtct catctgaagt tcaggttaat tagctgctgc ttattttaac gaacttcttg
      301 gagttgtttg cttttataat caaggcacag aagcagaacc aaatgttaag gtgccaaaaa
      361 aagctgacaa aagcaaaggc ccgcctcgcc accctccccc taaatgaaaa gccaactgtc
      421 tgcttcataa aactcgctta gcagacactg aaacaaaatg gactgtaaag ttcgttagat
      481 gaaaatatta aaaaagaatt aagctaatgg agataaaatt aaaagaaatg aggcaacaaa
      541 cacatcacac caaaaatggc attgcagtga cagctaagat tcctaatgac ggactgcatt
      601 cggaaaaatt aaatggcatt ccgtgcttaa atttctttgg aaagtaatga tccatgaatg
      661 atgctcactc caggcacttc agaaggagtg aaaaaagcaa agtgttctga aataacaaag
      721 aaatatgtgt tgcagagtgg aaggaggttt agacaatgcc atgggaggtc tcctaaatgg
      781 ggctg
//
LOCUS       KCOD01001153             867 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 128925pyr ultra-conserved element
            locus uce-990, sequence.
ACCESSION   KCOD01001153
VERSION     KCOD01001153.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 867)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 867)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..867
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="128925pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>867
                     /note="ultra-conserved element locus uce-990"
BASE COUNT          276 a          180 c          167 g          244 t
ORIGIN      
        1 tatttcagtc tttgggcaaa acaagcttga catccctgtt ggcatctctg ctgagaacag
       61 acactggcct tactcagaaa acatcaaacg tgactttctg ctagctgtgg caaagctgaa
      121 tactgaaggc agggggagga gaggtcacgg aggaagcagt agttaacagg gtaaagtgag
      181 tgttataatc cccaaattgc acttggactg aatgtttgca gacaatctgc ctgtctaaac
      241 caagacagta tcatttttct ttcttctagg agagggttaa gtatcatctg aagcctggaa
      301 aatggctgct gttgatacta ctgaggcctt ctctttaact agatccttca ggaaaaaaca
      361 aattaatcaa cagccagctg aagtgggttt aatgattgca ttctgcatac aatcagcttt
      421 tcccttttca agggccatca atatgtcaag ggaagacata tctgaaggat atagctctta
      481 acatcaaggt tatctattct ccacaaggct cccactcctt actgggctga tactttacac
      541 tgcctgtgtc taacattttc atcaactctg caatcaatca aggtaataat gttgtgcaaa
      601 aaatcaatta acaacgcaat taaactttcc ttattatctc aaagggctga aataatacct
      661 aaagggaaga tagactcact gaatgcagac atccataacc caatgtgaaa gtgaattatg
      721 aggttagaca gatgcaggca tgtactggcg ctgttatttt caaagggata tatctcatcc
      781 aggcagtgta tcagtcacca ccaatcccat accctaaaat tccaaattac ttttaagaaa
      841 tatacgatgt gcaatatcca tttcata
//
LOCUS       KCOD01001154             514 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 129035pyr ultra-conserved element
            locus uce-3225, sequence.
ACCESSION   KCOD01001154
VERSION     KCOD01001154.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 514)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 514)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="129035pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>514
                     /note="ultra-conserved element locus uce-3225"
BASE COUNT          184 a           67 c           88 g          175 t
ORIGIN      
        1 ccattagtta ttttagaggt aaaaaataaa aggatgtttt acctaccaaa ttttgctagc
       61 tacccatagc ttaacttaat gatttgtata agtgatagta attgctgaaa ctacagttga
      121 gtattattag ctataaaatg aacatggtta tatgtccaac acaactagca aggaacagaa
      181 atgcagttgt atccaagaga aaataattac agcaataatc agtgtaattc atgataatgg
      241 ctgaattgaa tttcacacca tagctccaag cacttacatt taatgaatgt agtttgtgct
      301 tgtttactaa aaaggttttt agcagaaaat cgataatgta acttcagtgt ttctaattgc
      361 aaatgcaaaa aaagtagtgg ttcaataagg attttgtagg gaaaattaag gtatgtgagt
      421 gcagcaaatg ctgttacttt aattaggcta cctgtacatt agtgctatag ttccttaata
      481 tttatttatt actccatatt gattaaaatt ggtt
//
LOCUS       KCOD01001155             580 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 129143pyr ultra-conserved element
            locus uce-2645, sequence.
ACCESSION   KCOD01001155
VERSION     KCOD01001155.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 580)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 580)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..580
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="129143pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>580
                     /note="ultra-conserved element locus uce-2645"
BASE COUNT          151 a          121 c          139 g          169 t
ORIGIN      
        1 aaaaggtgca aattgcagct gcacaattaa atcacggggt gtgtcccggc ctcgcagctc
       61 agccctaagg aggagacagt ggcattacta atcagggctt tgacctttac atggctttta
      121 tttaatacac attccacact tccccaaact cccatccaaa acattgacat ttccgctgat
      181 agattgggtc agattttgga gtagttgggg gactcaattc actcttacaa tggttaaatt
      241 cttacagcta aatgggctta ttcagttagt gcagcagctg gtgtgatttc gagaagaaaa
      301 taaacatttc cttcaaatat tttgattggc aactggacaa ctgaaatact caagctcgta
      361 ttgccagggt ccaaaaaagc aaatgggggc tggacaacga gtaagtgaag aggcagcact
      421 atggagcaga tgtgtgtgag atgtgctggg gagatggggt ttttagccca ttttcagctg
      481 tgattccttc acccactcct ttttccctgg cttttccagc tgcttgctcc aggttgctgt
      541 ttgatctgtg acaaagcttg ctgctgagtt aggtggttat
//
LOCUS       KCOD01001156             484 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 129248pyr ultra-conserved element
            locus uce-7940, sequence.
ACCESSION   KCOD01001156
VERSION     KCOD01001156.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 484)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 484)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..484
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="129248pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>484
                     /note="ultra-conserved element locus uce-7940"
BASE COUNT          150 a           93 c           89 g          152 t
ORIGIN      
        1 ttttattaga ctagtcagcc ttgatattag tcttcccaaa gctactatcc attacactgt
       61 caggaaagca agctgcctta cagtaggcca agtgtcaaca gaaggtaagg cagaaaatca
      121 gccacaatct aaagctaatt accctgccta gaagttaatt aaatacttgt taggagcagc
      181 agggtagatc ctaattaaac ttgtctaata acagtatgct gacatactct gacactggga
      241 attcctacag ggtttaaata attgtacaaa gggcaataat acctgtcaca tcatggtgtg
      301 caggcaaacc ctgaagatgc acatttctca gtattttctg tactaatttg ccacatattg
      361 tgcacttcac atgtgtttaa tttacacatg ttttaatttt ggtgccctgg atcttgttaa
      421 atgactgctg ttgctgatct aaaagggaga tggccattag tatttcattg tatcatttaa
      481 taca
//
LOCUS       KCOD01001157             863 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 129358pyr ultra-conserved element
            locus uce-1819, sequence.
ACCESSION   KCOD01001157
VERSION     KCOD01001157.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 863)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 863)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..863
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="129358pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>863
                     /note="ultra-conserved element locus uce-1819"
BASE COUNT          277 a          136 c          173 g          277 t
ORIGIN      
        1 tcttcagctt tgataaatac ttaaaaatgt atttttaaaa agtcattaac ttctggaata
       61 taagactcag caatcacact tgcagcatgt gaagctgctc tgaaatttgt agcaaaatac
      121 ataccacatt tttaatcagg gaattgtgtc tcataaagcc ctaatacctg taagtgaatt
      181 aaagtatttt actcattcaa atattccatt cattatgtga tctaagagga aatctatgga
      241 atcctattat aaacttagaa aaaggataac tctgagtttc agccataaac tgaagtaatg
      301 cagatgaact ggacacatat gttgcacaat aggtgattca gagcaatata gcacatgctg
      361 ttttatgata tggaaagcaa tcaaatctta tttgcaaaaa attcagatca attgaatttt
      421 aatgagaagc aggtgctgga gtgtagcatc cacaaagaat tctgggaatg tttaaaatta
      481 gtcccatatt tgccaggaga cagttgggta cataaacttt tttatttctt gattcatggg
      541 tctgttcgga ctgtagattg ctctgccatt ctgagttcag caatttgaat aaattatgct
      601 gaaaatcact tggtggttca ttttgtgtga aattatattt tcgctggaaa ggttaatttt
      661 gaagggagct tgaatggctg gaaattgtgc agctggggag tctgcatgtt cagaaggcag
      721 cagttattaa aagcgattgc atttcctccc agatttctcc tgagaccaga atcagtggag
      781 atgttaaacc ttgcttgaca ccccagttgg ataattgtgg gtgtgggagc taatcagcag
      841 aagatgtctc ctcaatttaa atc
//
LOCUS       KCOD01001158             362 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 129465pyr ultra-conserved element
            locus uce-4752, sequence.
ACCESSION   KCOD01001158
VERSION     KCOD01001158.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 362)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 362)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..362
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="129465pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>362
                     /note="ultra-conserved element locus uce-4752"
BASE COUNT          129 a           69 c           60 g          104 t
ORIGIN      
        1 aagacagtaa atctccatgt atgaacccac ttcaagataa aatccaaact tgaagcacag
       61 atgcatatgc atcctggaag ctacataacc caggcatatt ttattcacat cacactccaa
      121 ggagctcact gactggaatt caatagaaac tgttctctgt gtgaaagtaa tttcagaaag
      181 taatctagtt tatggaaatg aaaggcatca aaacacaaaa aacactgttt ctgtacaagt
      241 gctttgcttc aaatatttga catggaaatt tatataatcc ctctggggca catgggtttc
      301 acgagtgtta acatcttttg aaatgaattt cacaaatgtt tatttggaat accaggcata
      361 ca
//
LOCUS       KCOD01001159             796 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 129576pyr ultra-conserved element
            locus uce-4658, sequence.
ACCESSION   KCOD01001159
VERSION     KCOD01001159.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 796)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 796)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..796
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="129576pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>796
                     /note="ultra-conserved element locus uce-4658"
BASE COUNT          204 a          174 c          189 g          229 t
ORIGIN      
        1 ggaactggcc cacggtttgt catcaccatg ggaggactgc gaggtgggac accaattgga
       61 ggcacaatgc tagcaggtgg ctggacagaa actggtggaa tatttggatt ctcactgatg
      121 ggaataggtt tgggaactgg cgtggggatt ttactgacag agcagttggc agtgtcagac
      181 ggagaggcag tggtagacgc tgatggtcca gggccttgaa tttggccagc tgcagacgct
      241 ggggatgggg cttttctccg agcatctgct agcggtatat tccaagaatc tggagtcagc
      301 agctgcaccc cagtgccttc tgctttattt tcgactggag gatgtaatgt actgcacagt
      361 ccagctggaa gattggcctg tgtctctttg tagaaaatgt ccattttgta ctgattgaga
      421 cattttgcac tgcagaactg aagccttctt tccccgtccc caaaatccag atactctttt
      481 gtgtgtctta tgtgcttaca ccagtcacat acctacaaca cagtaataaa atcaaatcag
      541 gtaagaaaag caatcttctc ttcatagcgt tattttaaaa gtattttttc agttgctttt
      601 tctaacagga agttacattt gtgaaaactg caccatatta atgaaccctt ttctggctcc
      661 tcagctctcc cttatataat gcattatata tcttgaaccc atagcacaga gaagaatcct
      721 cagtcagcat aaactgctac aactacgtat gcaaagtccg agtatggctg tgattactcc
      781 ttgcctgtgc catctg
//
LOCUS       KCOD01001160             500 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 129686pyr ultra-conserved element
            locus uce-642, sequence.
ACCESSION   KCOD01001160
VERSION     KCOD01001160.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 500)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 500)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..500
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="129686pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>500
                     /note="ultra-conserved element locus uce-642"
BASE COUNT          154 a           81 c           86 g          179 t
ORIGIN      
        1 ctttcagtca aaatggggtg ggagggcagt caatatttta aaacagctgt aaaaaaaaag
       61 ttttgcaagt ttaatcttaa tagtctaaac ccagcagaca tgctctgtca taaaataact
      121 attagtgact agtttgtatc ctataaatct aacttgagtt gataatatgg tccattacca
      181 gctaactgca cagagtattt ttcattttac actcttcagt tactttttag tgaagtgtta
      241 aaaaatatga agcttttctc ctctctaaaa ttgcacactg tctgtctgtt attagggaga
      301 taacagctct tataaatgtt tcagtaagcg ttaagtagac agttatgtgc actctcattc
      361 cacgcttatt tgcttactgt aataaactga taaaatatgt gtggtttgtc tctgtgtatc
      421 tgcaggcatc atgagtcaca tagatttcct ttagaaataa tgttgtgtct gcagaattga
      481 ttggttattt tcataaacca
//
LOCUS       KCOD01001161             754 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 129799pyr ultra-conserved element
            locus uce-4428, sequence.
ACCESSION   KCOD01001161
VERSION     KCOD01001161.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 754)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 754)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..754
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="129799pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>754
                     /note="ultra-conserved element locus uce-4428"
BASE COUNT          134 a          180 c          234 g          206 t
ORIGIN      
        1 agaaaatgat ttggttaatt acttttacct tgtactgaga ctcgcagttt tcgttccagt
       61 cggcgactcc aatccctccc ctggctttga ggatttctct ctgttcattt gctggagtat
      121 tgagttcaat tcactaatga cattagcctt ggggcctgag agaatcgggc ttttcacctc
      181 tggcacgtcc ccccatagct tggatgtcct ttgggggacg actttggcca ggttgggctg
      241 ggcactgatg ggaggcgggg gcggagcggg aggagggatc acaaagctgt ctacagtttc
      301 ctcgatcagc gcatccttgt aaagtgcatt gcttttgttg attatgggct tcatttttgg
      361 cttaggaggt actgggggtt tgtccaccag aaatgtttgc ccatctgcat agactgtaca
      421 agtatccacg ttctcccctc cttccgagga taaggtagag atgctggaca ccgttgagat
      481 agtgctggtt gtctctaggt gatggtcgct gctgctccga ctgtcgacct cctcgatccc
      541 ggagtcggtg acgttgtcga agctgtcggg gggtggcagg aaggaggcag gcaaacagtt
      601 tgagagaccc gcttgctttt tgccgtccaa ggagtttgct ggctggctgg ggaaggggtg
      661 ccgttcttcc tctgcgccat caggtccgtc agcgccgagc cgggcgccgc gcggtcgtcg
      721 gggatgtcga agctgttggc gaactccaag ggag
//
LOCUS       KCOD01001162             325 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 129904pyr ultra-conserved element
            locus uce-5702, sequence.
ACCESSION   KCOD01001162
VERSION     KCOD01001162.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 325)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 325)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..325
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="129904pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>325
                     /note="ultra-conserved element locus uce-5702"
BASE COUNT          113 a           49 c           51 g          112 t
ORIGIN      
        1 gaggttgaag aaagcacgtg agagggaaca cctcatttac agctggggat gccttcatgg
       61 atttttattg atggcattta tcccatggtt taacatgtta attatactgt aataaacatg
      121 gctttaatat taaacttttc cttattatcc aaagtcacca cagtccattt cagtaaatat
      181 aaaaatatat acttaatact ttgtacaata ctggtttttg gtccaaacaa aaatggatca
      241 gaaaagccaa taaatttact ttaagaattc ccaattttta agattttcta aatggattta
      301 ggcaactttg aataatggga tttac
//
LOCUS       KCOD01001163             578 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 130009pyr ultra-conserved element
            locus uce-2447, sequence.
ACCESSION   KCOD01001163
VERSION     KCOD01001163.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 578)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 578)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..578
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="130009pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>578
                     /note="ultra-conserved element locus uce-2447"
BASE COUNT          192 a          107 c           99 g          180 t
ORIGIN      
        1 gaataactaa ttaagaagca acaggttcac ctagagcaaa tgcaaatacc caaccacagg
       61 tctaaacatt gggcaagtga aaacatttgt tctccatctg tcatttgcta atctattgca
      121 aactgcacta tctgggtttg taacatctgt ataacaaatg ataatgtaga atagttgttc
      181 tgggccttta tgaggcttgg tgttgataat ctccaaagca cacccatgat tctttaaatt
      241 aaacataaga atcttgtctc acagtacagc taggttatcc atgtgtaaga gcccaagcca
      301 agtaattaca catccgctca aaggattaga cacataagat ttctttaaat ttttaataaa
      361 agtgcacagc tgttgtactc ttttgttcta gataaaaacc attaagctca aagtgattca
      421 cagttatgct tcaagagaag tactttcaaa gtatttctgt taggcacttt tttagtagat
      481 ttaacatcac tttaacctca tggcaacaga tttgagccag gaataagctc atggagaggt
      541 atttggtcaa gttttaaaga atactctgat cttcccag
//
LOCUS       KCOD01001164             590 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 130118pyr ultra-conserved element
            locus uce-5888, sequence.
ACCESSION   KCOD01001164
VERSION     KCOD01001164.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 590)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 590)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..590
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="130118pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>590
                     /note="ultra-conserved element locus uce-5888"
BASE COUNT          213 a          105 c          128 g          144 t
ORIGIN      
        1 ggacacccca gagagaaatg ccaagcttga ggaagcagcc aaagggaagc cagagcattg
       61 tggccagcag tgaaggggac acccatcaga gccaatgaca gccagctctg agctcggaag
      121 aggaggagat agtccgcaga acgcttcaca taaaacgctc actactaagg aagtgagagg
      181 cgagagatat tattttgaaa ggagaggaaa agctaggcgt ttattctctt catcaaaggg
      241 aaggaagaag caaatgaatc agaaatcaaa gattgaatat cattggtttt gctgacaaag
      301 caatcagcaa tcccctcaca gcaagtatag gggtttgttg aacaaagcaa aggaatttga
      361 aagtctttaa caaaatatct ttccatttat aaaattagac ataattttag aacagcattt
      421 tgatttagga gctgtgaaga atttctgcat taaaaaaatc caaattttgt gatgtgcaat
      481 taataacgac tttgtccaaa ccctcagcct cctttgtaat tctcttaaga aggcattaaa
      541 tgaggacatt ttcactttag ttgaaaatca atgacacttc aatgaagcat
//
LOCUS       KCOD01001165             554 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 130228pyr ultra-conserved element
            locus uce-7129, sequence.
ACCESSION   KCOD01001165
VERSION     KCOD01001165.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 554)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 554)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..554
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="130228pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>554
                     /note="ultra-conserved element locus uce-7129"
BASE COUNT          159 a          100 c          106 g          189 t
ORIGIN      
        1 agggtgactt taagaagaaa gataaaggaa acagtgagat tttttctgaa aagcctagtt
       61 cagctttacc ccttgcggag caataattta ttcaaactac agtttaaatg tctcctcaaa
      121 gagttaactt attaaaaacg atcatgaaag aaaatgcccg tttatactga aattatagag
      181 aagtctcttg tctttatcaa gtctcaagtg tatttgcact taaaagcttc tttgccaact
      241 agaaacaata gtgcaggtgc attgcccttc agtgaacaat gtatttatcc tgggaggcag
      301 gaagttggtt tcacacctgt ttcttctttt tatttgttct tggcctggct aatttgccga
      361 atgtcatgat tggtacagct gaggctgtca gaaagaatta ccactttgta acatgacggc
      421 ctaattctgg cagttcagat tttacaatga tttgcctttt gttctttctt tctgttttct
      481 gtactgcaca caaactgaat ctgatccgta gtaacagaaa ataggctgct ttattagatg
      541 actgtccctt ttgg
//
LOCUS       KCOD01001166             537 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 130339pyr ultra-conserved element
            locus uce-7308, sequence.
ACCESSION   KCOD01001166
VERSION     KCOD01001166.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 537)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="130339pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>537
                     /note="ultra-conserved element locus uce-7308"
BASE COUNT          156 a          119 c          132 g          130 t
ORIGIN      
        1 tgggtgtggg cagcctggca gaactgaagt ctgggcttga gcttggatgg gggtgtggat
       61 tattaaccct tcacccagca gcaccaaaat taggactgtc cccttctggc agaaatcaca
      121 gaagctgctg tgatggaggg aaaaaatgag caaataaaca gaaatcacca aatgtcttgc
      181 ctgcttttct cccacactta tttcctctcc atgtcaacac caaacaagac agactaaaat
      241 taatggggaa agcagcaatt agcaaattag gttagcggcg tgttgcagtg tgccatggct
      301 gccaggtgtg aggggctctg gcagtatatt tattaatggc tgtcagaaaa gtgacacttt
      361 gatgaatgaa gctgggtaat cggcaccctc cgacagcgag cgctgagagg cctcaacatg
      421 ctaaactgca aaatcaaacc tttctgaact gcaagaggag cgcgtttttc catcagggat
      481 tagaacgcac attctcctct aaatgctcct gtaacaactc taagttgtca agttgaa
//
LOCUS       KCOD01001167             666 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 130448pyr ultra-conserved element
            locus uce-2638, sequence.
ACCESSION   KCOD01001167
VERSION     KCOD01001167.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 666)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 666)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..666
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="130448pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>666
                     /note="ultra-conserved element locus uce-2638"
BASE COUNT          205 a          116 c          128 g          217 t
ORIGIN      
        1 tcaataacat cttttttgta gacttgttac ctctttattt acccttcaag atatttgctt
       61 ctggtttata gcacaatatg tattgaggag agacataaac ggggcaggga aatgccattg
      121 aaatgagaaa atagaaagtt aatggtgaaa ctagagtagg ctaaattaat ttactgatta
      181 tatgaccata tcccatcagt aagacatgaa ttattttgtt tacagtcttc aggttgttgc
      241 ctggctctgc tacccttcac tgttttcaat ttaaactgca gtgattgtaa agagaagaga
      301 aaataaacca aatgttccca ttccacttat aaattttatg tttataatct tgtagccatc
      361 catggaaacc atgcctgtta ttcaagtgct tcgcctcccc aagctgagca taattattac
      421 tgatacatct ggatgtttaa ctacctacta caggctcttg aattctttcc agttataaaa
      481 tatccattaa tacaggagtg gagaggagtg gagtcacagg gggaagaaga gaggggaggg
      541 tttatgtcta ttacttcaat tctcagagga tttatgcctt gcttagcacc acagggagta
      601 aaatattatt acctaagcta gtgtcattca gataaaagga tgtaacgtgc ctctttccac
      661 ttggtt
//
LOCUS       KCOD01001168             337 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 130551pyr ultra-conserved element
            locus uce-1506, sequence.
ACCESSION   KCOD01001168
VERSION     KCOD01001168.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 337)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 337)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..337
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="130551pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>337
                     /note="ultra-conserved element locus uce-1506"
BASE COUNT          131 a           67 c           48 g           91 t
ORIGIN      
        1 tatttctgag ctgttttatg tgtaaaacac aacttctgta aggtcttctc cacttagaga
       61 tacaagtata aaagttccaa acatcaatag atgagtgcaa tgatattcag tctaagttaa
      121 tccccagaca tccaaatcca tgaataaaaa ttcatcagtt ttaaatacac tgagcctatt
      181 aagcaagaac aaaagcatat gcacaaaaga gcttttaata tatttcaaag cccacaagag
      241 ccatggtctc attaaaatta taaattacac aaacatggaa taaagattcg aactgcagtg
      301 cagctaagca gattacagca aaccccgcgt tccatat
//
LOCUS       KCOD01001169             526 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 130656pyr ultra-conserved element
            locus uce-3366, sequence.
ACCESSION   KCOD01001169
VERSION     KCOD01001169.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 526)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 526)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..526
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="130656pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>526
                     /note="ultra-conserved element locus uce-3366"
BASE COUNT          161 a          107 c           95 g          163 t
ORIGIN      
        1 gctaatttca cagagtgccc aaaacattta tttcataggg aaacaactga aagttttcag
       61 aagtacttat cctggatgaa ataaaccaag gtaacacaac cccagtcccg cgacttgcct
      121 ctccccaata taagcctgtt acacctgaaa gatttgttca gaatgtccag tgggaacctg
      181 gaaatcgtaa taatttgtag tatcgattgt gtgaagctat gcagctgggg cctctagtga
      241 atagacagga atagacattt tattgattaa cttttacagt catattttca ggactctgct
      301 gcaacataat tttcacttcc cagctttgtg ctgctgcatc atgaaacttg gattcttctc
      361 tcttaacatt tacccacctg agagaaacag tacagacttg tcttttttaa gctgtgctct
      421 gcagaaatgc ataatatttg gtgtagtgaa atcctttaaa tttcccctct gctgtcacaa
      481 taaaatgaaa aatcttcaca agtggtgtta gcaagtattg aataag
//
LOCUS       KCOD01001170             759 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 130768pyr ultra-conserved element
            locus uce-2013, sequence.
ACCESSION   KCOD01001170
VERSION     KCOD01001170.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 759)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 759)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..759
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="130768pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>759
                     /note="ultra-conserved element locus uce-2013"
BASE COUNT          197 a          196 c          145 g          221 t
ORIGIN      
        1 ttcagcctct aggcctaatg gaaaacaggg agctacgctt atctatgtga cccctaaaga
       61 atatgacatc tcactgcaat atatactttc ccatctgctc cctcctcctc atgacatctt
      121 tcactgcaac caagttcctg actaaagaaa taaagtgact ccatccattc ccagcagtta
      181 aggttaaaga gatgcactcg gttctaaatc tctgctgcta acgctctctt gacctttgac
      241 tcgccttagc atggcgaagt ttgatgggcc catgccaagc cgtcttctgt aacccatgag
      301 ttggttaata tactcccatt tctcattcag acagccaaca gaggcaaaaa aggcagcagg
      361 gcaacaaatg ctgtctcctg caaatgctct gtaataaatt gttctttcag tagtgcagaa
      421 gacagatttt tctttttctt ctttcctcct tttgcacaga agtcaccaat ggaaagctgg
      481 gtttcccacc tggccccagc tgactgtgcc cataaatttg cctatgcaat gcctgtttac
      541 gggtcgctgc tggaacacgg agacgggtgc attttctaag caccgggtag ataatcacag
      601 taattgatgt ttggagctgc tcactcctag gagcataggg tctctttctc ccagtgaggc
      661 cctgctccat gttatcagtc cagcccataa ttaaatatca ctcttttaca atatgtttca
      721 ggttccttaa tgagtctaaa gcagaaatag tcacctctt
//
LOCUS       KCOD01001171             385 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 130871pyr ultra-conserved element
            locus uce-4257, sequence.
ACCESSION   KCOD01001171
VERSION     KCOD01001171.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 385)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 385)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..385
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="130871pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>385
                     /note="ultra-conserved element locus uce-4257"
BASE COUNT          124 a           85 c           72 g          104 t
ORIGIN      
        1 gagctgagcg gagcctgcac gagatggatg cgggagccat caatcccaag ggataagagg
       61 gtttctaccg tggtgtaaat gtcaattgta ttcccataga caatgacgtt ccctagggga
      121 aagatttcta agacatacaa tgaaaacctt attagtataa ctcagatgat aataacacgg
      181 aattgctctc tttgaccctc ttatttctct gatgctatga agcaaacaat gttacctagc
      241 aacagcagct aagataattt agtgaagaat ctgtacaaaa catcccacaa agtaggctta
      301 acacagaatt catcctgacc ccataatctg aaatttgaaa agcctctatt ttgttctccc
      361 ctctctccct aatttcaaag gactg
//
LOCUS       KCOD01001172             303 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 130972pyr ultra-conserved element
            locus uce-7567, sequence.
ACCESSION   KCOD01001172
VERSION     KCOD01001172.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 303)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 303)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..303
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="130972pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>303
                     /note="ultra-conserved element locus uce-7567"
BASE COUNT          102 a           67 c           60 g           74 t
ORIGIN      
        1 gcatagtaaa ttttaaagga aaaaaatgtg tcaggcaggc atgagctgtt ccctccctcc
       61 ccccctcttt cattagctca ctggcagggt ggcacttctg aacctcatta ctgcaggagg
      121 atttatgaag ctgaacccaa tggcaaagaa aaggcatctg tcaataattg tagggagctg
      181 cactcacagc tttgaaatct cattaagtat gcagttatca ggcataaaga tcaaaaacat
      241 tactcaactc cgacagaatc ttatggagga acattaatta gcaacaggcc tacagtacaa
      301 aaa
//
LOCUS       KCOD01001173             817 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 131083pyr ultra-conserved element
            locus uce-3135, sequence.
ACCESSION   KCOD01001173
VERSION     KCOD01001173.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 817)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 817)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..817
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="131083pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>817
                     /note="ultra-conserved element locus uce-3135"
BASE COUNT          210 a          179 c          165 g          263 t
ORIGIN      
        1 atctcattca cttctgcatt gtgtcattgc tctcatggag agaacaggca attcgcagaa
       61 tttcctttgc tgttacctga tataccatta ttcacctctt atcattttag caaagtagtt
      121 acactgctgt cagaggtaat ggagagcatg ccgctaagaa aattggctgt aatttattta
      181 tcaactgttt ctgcatacca caaaaagaga ccatctactt tacagctggg tctaaggtat
      241 ctgagagccc ttgaagttca tggttttccg gtattctaag ttctacttat ggcttttcct
      301 gtatatgaca cacaacacca cccctgtggt cttcaaggct gatttcttct ttgctttctt
      361 tagtcacaaa tcattctgag gcgtccctta agtgcatttg tattgttaag tgcaccggcc
      421 tgatttggtg ttaattcaat ttgagtgccc ttaatatctt gcgggagtga ggcaatgcat
      481 gaaagctgta ccttgtaaaa acaggttcca ggtctgcctg agagcaaagc acctttccca
      541 cagcaattta ccaaagttgc tgataaaatt ttcataagga aaccttttta gtctgaccct
      601 attgtgttgt tctaccatta agagttgggg aactgagact gtgtcctggt gacagtttat
      661 cactatctcc attattttag cgtatagaca gcctactgat gggtcacagc ctacatcctg
      721 tcctcttaca gtgtggaaat ggctttcaga gctggagccc agaggcccaa gtatgccagc
      781 tgcagcattc gtatgtcaat acaactgaag tgaactc
//
LOCUS       KCOD01001174             519 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 131194pyr ultra-conserved element
            locus uce-560, sequence.
ACCESSION   KCOD01001174
VERSION     KCOD01001174.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 519)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 519)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="131194pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>519
                     /note="ultra-conserved element locus uce-560"
BASE COUNT          162 a          101 c           85 g          171 t
ORIGIN      
        1 tttctctctt caaggaccag ttggctgtac aaacacttgc ttttgcatct ctttgagcta
       61 tcctcaaaac accagtgtta taattggatg cccttacctc tgctggcctg tgctgcatgg
      121 gtcatatatg taaacatcaa actcaaataa caacccccaa atttaattta tttctaccta
      181 aacaagttct tttatcataa agcaataaat ttgtcttggt gctagcaatt tgttgcgggt
      241 gacataacac tgcaaattga ttaatcgcta ctgtacacga caaaatgaga aaagcaagga
      301 attattatga atagcgtcca tctgatacag tagggattca ttattcaaaa gtgttagcta
      361 gtggttagct atccccttgt tgcagattac attcatttgc agaatcctac atcatgctta
      421 cacaaatcaa caaacatgca tttattaaga catggaatga aagctattaa aatgtgaaaa
      481 attgcctttt tctttttagt caagtttggt ggtagcctt
//
LOCUS       KCOD01001175             265 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 131303pyr ultra-conserved element
            locus uce-235, sequence.
ACCESSION   KCOD01001175
VERSION     KCOD01001175.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 265)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 265)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..265
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="131303pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>265
                     /note="ultra-conserved element locus uce-235"
BASE COUNT           94 a           56 c           39 g           76 t
ORIGIN      
        1 tgtaagaaat aaaaactaca cttttaacac gatggtaagt cactacaatt acatgtgaag
       61 tcacctatac tttcttaaca cgattgaaat tacattggta tgggttttaa cccgtaatgt
      121 aataatctaa ggctttaata gatgtacagt acaatcagga aaatcaacac atcattctta
      181 tctataaagc atctctctca agcataaaaa cttgcagtaa actcggagta tggcgagttc
      241 tacaaccgaa cccgcgcctc tccct
//
LOCUS       KCOD01001176             701 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 131409pyr ultra-conserved element
            locus uce-1371, sequence.
ACCESSION   KCOD01001176
VERSION     KCOD01001176.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 701)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 701)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..701
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="131409pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>701
                     /note="ultra-conserved element locus uce-1371"
BASE COUNT          220 a          132 c          140 g          209 t
ORIGIN      
        1 caggaaggaa ctgggctgtc agcttcatcc cgtcaaaaag ccttccagtg ccatgagctg
       61 aaggcaggtt ccaattgtta agtcattctg gcccgagctg aatttaaagg caggctcctg
      121 tagctaacgg aagttgctgg aggcaactgc tcagcaaagg cattaaaatc atatgtcgca
      181 taattattcc tttgactcaa ttacccattt actctttatt tttatatcca gtgaaacctg
      241 agggcaacaa atggggaaca aatcctgtat aatagttctt gttttggtac attcacttag
      301 tggtgattta ttaagggctg ctgaataagc ctgattaaaa tgcataaaca gttctgaaca
      361 gtaaacaacc atgtctgagg atgaaaaaat gggacccaca tgctgtgcat ggaaattgcc
      421 cttaacaaca tggcctattg ttgaacagat aggaagccaa aggttgcttg taatcaaatt
      481 tgaagtttcc catcacttat aaaagcaaca cttccttgtg taaacgtttc aatttgttgt
      541 tgttgaaaac tgcttcctga cttaatccct gcaggaacac acaaattctt tgattgtcag
      601 gtagaaagac aattttagat aaagtaactt ttagatttag actaggtaaa ataaatatgc
      661 tgcattcctg cagcagtgaa atctttcctg agattaatta g
//
LOCUS       KCOD01001177             884 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 131521pyr ultra-conserved element
            locus uce-3541, sequence.
ACCESSION   KCOD01001177
VERSION     KCOD01001177.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 884)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 884)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..884
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="131521pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>884
                     /note="ultra-conserved element locus uce-3541"
BASE COUNT          232 a          247 c          182 g          223 t
ORIGIN      
        1 tgggtccctg acatcttctt ctgccccatt tttgtccccg caaggctgcc cctgcccagc
       61 cgcgtatgaa tgaacagaag tgcctttcat cccccacttg cctggtgctt caaaaggaac
      121 tacgaaaata gcagcaacaa aaatccagcc gcctgccaaa aggcccgcac acgtcccatt
      181 ctcacaggca tgcgaaaggt tggagagctc agcaaaattt ttatgtacgg gagcaggccc
      241 aaggaaaact cacacgccat aaccaattgt ggacagagga tcatctatca gcagacaaat
      301 gcaggaactc cagaatgtct ctcctcaaat gaaataatat atctttgaaa gccaatgccc
      361 gttttaggcc tgaggcccat atatcaagcc tgagaggctt gtggatacgc tccagggcca
      421 ttaaccttcc acctgtttcc ccttgtcctt caggatgaga ccctgccctt gattttactc
      481 ccttcccctg ttcatcttcc gacagagtgt aaatgtaaag cagagggcct gcgaaataat
      541 tcaaaggcaa tggaccaggg acatggttac aaatctctgc cactggcact gtgacttatg
      601 caggcagttt gtcacacatg agccaggtga cctctgtgac ataacagaga aaaatatcgc
      661 ccgagatcaa aagatgagat tcagagcact ctaagtaact ctggtgtaca cagccgcact
      721 atgcggtggc caagggttcc tctcttccca acgttgctcg ctccgctcgc tagcaggcga
      781 gacgtactcc tgctaatttc agtaaacttt ttctcttgtt tctttggaaa cctttcctgt
      841 aacctgaaca tcaatatttt tctccttctg aagcccctct tttt
//
LOCUS       KCOD01001178             648 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 131633pyr ultra-conserved element
            locus uce-5593, sequence.
ACCESSION   KCOD01001178
VERSION     KCOD01001178.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 648)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="131633pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>648
                     /note="ultra-conserved element locus uce-5593"
BASE COUNT          183 a          160 c          140 g          165 t
ORIGIN      
        1 agaaacacca agggtgggaa ttaagacgtt ttcatttcct ctttcttgtt tgttacttgg
       61 tctttctcta gtaaaaaaac aacctgacaa caaaaaaccc agctgcacct ggggttttcc
      121 ataaatgttc tcttgcaatt caactcgttc acctcctcgc aacactaaaa tacggtgcac
      181 tctctcttta agagagactg ctccctgccc agctgttgac ttgcctgaag gtgagacctc
      241 tgcttaaatt catggctcca gctgtcaaaa gcaaagaaaa gcagcttttc cttggcggct
      301 ctctgctttg ggtagaattt gacatcttcc tcagtcagca gaatttaatc agcatcaagt
      361 gcccacagcc actcagctcc accactgctg gggctggggc taaccagacc tgcggaggag
      421 aagaggggga gagtcctcaa cacagcaggc aaagacacag gcacaatcac acgtttctat
      481 gggaaatcca aagcttgtca ccgtctaggg agagcctcat tatcctattt gacttaagaa
      541 ttgctgttat catgcagtaa ccttacccat ctcagctgag cagctgagag cagtaaatgg
      601 agtgagctat tgacagctaa caatgataag taaacctggt gaaatggg
//
LOCUS       KCOD01001179             564 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 131743pyr ultra-conserved element
            locus uce-3476, sequence.
ACCESSION   KCOD01001179
VERSION     KCOD01001179.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 564)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 564)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..564
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="131743pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>564
                     /note="ultra-conserved element locus uce-3476"
BASE COUNT          179 a          112 c          103 g          170 t
ORIGIN      
        1 ttgtaacaag cagaagtgac tcagttcctt aaataatggg acatcttttt tatttcttcc
       61 actctttatt tacttgcagt ctccactgtt ttactgcaaa aactgtttgt aaagcaagaa
      121 ttgtgctgat cacatcaaaa ctcaataata taacttgttt ttccattatt agcaccatct
      181 gagcctgttg aaagccttaa ccagggcttt aatttttcca cagagagctt taaattaatt
      241 agtggtttac atgctaacaa agaatctgat acattcataa atcaatctaa tgcagaagga
      301 ttaccagagg gtggaaacct attcagtggg gacctcacat tcacttaaca tggtgtgttt
      361 tcaacaaaag ggtgcaggtg tggaatagac gggtaccagg aagagcccat gataatcact
      421 ttgcatcact taaaggacac atggtaaatc agagcctagg gcccacccca agtgaaaacc
      481 gtgtagttac aaaaggcagt atcatcccac tttaaccttc acagttaaat tgccagagcg
      541 gtacaatttc ttttatgtag gtta
//
LOCUS       KCOD01001180             695 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 131855pyr ultra-conserved element
            locus uce-648, sequence.
ACCESSION   KCOD01001180
VERSION     KCOD01001180.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 695)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 695)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..695
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="131855pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>695
                     /note="ultra-conserved element locus uce-648"
BASE COUNT          220 a          131 c          130 g          214 t
ORIGIN      
        1 cctcgaatgt ggacatttat gtattcccat tattcagacc ctcctgatgc cacaatctcc
       61 cacttctata gtttataaat gtttgattta aaatatagcc attttatcat ttgtaccaca
      121 tttacctcat cttaccactg ttctgactgg atgagaagct aatgtagcct acactgtctg
      181 gtcaattatt gcatggacac cagggaccaa ttaatgccat ccataaaagc ctgaatcatt
      241 ctgtcaatta actagaacta actatgtcat cagatatatt actggtgagc aagtctattt
      301 ggttgcaata tgtcttgaag gagagcagta tcaaatgaat cacaattgac ttggacaact
      361 gctagcataa tttcagaaga tgaaaagaca aatgtggtag ttattagtgg tcccctgagg
      421 aattacggcc aagcaattgt aatgtgctaa gactgtacta gcaggtgccc acagcacaaa
      481 tcaggcagag ggttaaatca atattttcaa tttcttagga tcaattcagt gtttgaacaa
      541 gatggaaact tgttagcaat tggcagaatg tgtaaatgaa aagtcaaact tcttattatt
      601 tgttaaaaag gaatcagtgc tctgcatcat gcccttggca caaggtaatg ctttcatgat
      661 ccagttgctt gggcattcac taaaaatgta gcagt
//
LOCUS       KCOD01001181             716 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 131968pyr ultra-conserved element
            locus uce-337, sequence.
ACCESSION   KCOD01001181
VERSION     KCOD01001181.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 716)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="131968pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>716
                     /note="ultra-conserved element locus uce-337"
BASE COUNT          243 a          131 c          129 g          213 t
ORIGIN      
        1 tctgcagaaa ctgatgcaaa gagattcttt tcttcagaac taatgaaaca tcaagttcat
       61 ttatcctatt tccactaaat ggaaaacaaa aatcactctg cagtggtgac atctcaatcc
      121 tttgactgtg tgatttagtc tagccaggat tttgaattct gaattctgca gtagtacttt
      181 tctgttaata tggacttatt acccacttgc cacttagttt atcagtcagt ggttaaatcc
      241 agttctatca gtgaagtaaa tgccgacaca ttatcactct gcagcaggct gccaacagag
      301 acagtctcgt cctagtcatt aacaagcaca atgtatgcag aacaccagag gggaattaaa
      361 accacaaaaa atacctcagg gtggtatttt taatatgaga atttaatttg taatttcaca
      421 gattaagaat tttggctgca ttaatccttt tatcagctca cagcaggtta tttgcagaag
      481 cataaccata aggcgatatt cattggcaga aacacgtctt tgcataacgt taaacatcag
      541 gagcagtgga accttttgaa ggggggagaa taaagatgaa aaatcattat attttaaagc
      601 aaggttcttc taaatgcctc cagtaaaaat ttgagttaca gaaagactat ttctgtgtct
      661 agtagataat cattatgaag cataaaccca gatgcaagaa aggacaatcc cagtat
//
LOCUS       KCOD01001182             670 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 132078pyr ultra-conserved element
            locus uce-2042, sequence.
ACCESSION   KCOD01001182
VERSION     KCOD01001182.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 670)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 670)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..670
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="132078pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>670
                     /note="ultra-conserved element locus uce-2042"
BASE COUNT          239 a           99 c          121 g          211 t
ORIGIN      
        1 aagtacaatt gttttaacta ctgtgaaatt gacagatgaa gctgaaaacc aaaagcacct
       61 ttcatgggat tttaaacact attttcctcc atatgccatc ccaattatta tttagatatt
      121 acattcctaa tttactgtta aggttgatta gaattcaagc ctctcaaaag catgcaccaa
      181 aggtcttggg ctgtggaaaa catttttata aaataatcca ttaatgcaga ggagtgcaac
      241 taaattagtt agcaatttgc tgagcatgaa ttaatgaaca gagcttctcc cagctcccag
      301 agttgtaatt ttcataataa cctcagacct ttatttggca ggttgtttag ttttttcgtt
      361 tgaaggtttt cattagtcta atgaggactg tgcaagggcg agcagtcagc acaatttaca
      421 tggggaagct atcataataa atgaagcaat ttgaataaca cgcaagggtt tatgcaacaa
      481 gataagaaga gattgtagag tgagatttag aggtaaccaa tacattagac caactaataa
      541 ctgaagtaat cccaataaaa ggcttaagtg aaaggaatga aattaatgat atatacaaaa
      601 ctgtaatgat atgatacatg attcattaga ttaataaaat aagtgttcaa ttgtttttag
      661 tgcttttagt
//
LOCUS       KCOD01001183             403 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 132189pyr ultra-conserved element
            locus uce-3742, sequence.
ACCESSION   KCOD01001183
VERSION     KCOD01001183.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 403)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 403)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..403
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="132189pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>403
                     /note="ultra-conserved element locus uce-3742"
BASE COUNT           90 a           80 c          127 g          106 t
ORIGIN      
        1 tgggatgtct gaagggggag ggatttaatg ccataaggga gcaaggtgct atgagaatac
       61 tccgtctcat aggagttcat gtccagtttg ttggcgctgg gctgctgtac gggcgtcaca
      121 aaccaccgct gaggagagct ggccacctcc tcgttctgct gcggggacag caggccgttt
      181 gtctgaggga cggttctctc accgttgtaa aacctggctg ggggcaggtt gttgacaaac
      241 tgttcttgga agaacggctg cacgctgtat cgggcgccag ggacgatctg gtgggatcta
      301 ggagaatccg tgggagatgg agttaatctg tcattttcgg aagctgtgta catgctacac
      361 aattccaata cttaattata aatttaattg gtgatttagt agg
//
LOCUS       KCOD01001184             712 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 132299pyr ultra-conserved element
            locus uce-6468, sequence.
ACCESSION   KCOD01001184
VERSION     KCOD01001184.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 712)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 712)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..712
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="132299pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>712
                     /note="ultra-conserved element locus uce-6468"
BASE COUNT          216 a          144 c          124 g          228 t
ORIGIN      
        1 ggacactgga attaatcaga ctcaagtttg ccttccttta aatcaaaggg tcatgtgaag
       61 gtggggagaa gaatttgcag tggtagggat tgcatttcga attttgcccg acataactcc
      121 cagtgccttg aattgctgat tattacaatc accaacagac acacatacat attcctctca
      181 catttgtatt cattttactt tgactcgact ggaatcataa aaggaatgtg taaacgagga
      241 gagcctgttg ctgaaatgaa gttgaatttt ttccccacag aaacttgggt tcatgacagc
      301 tttttgttgg gcaggacatt agccttttgt aatttattgc ttttagatta aatcttggga
      361 aactcaatat tgcagttgaa tgattagagc aatacccctt ggagtaataa attttctttg
      421 gtgctatgca tctcccgatc atgtttccct tctaattaca tttacataaa tgatattctg
      481 caaaattaaa ttaacattca aaccgttatg ctgccaagga gagacaaaaa ttagttacaa
      541 acttaaaaaa ccgaaatgac acctcattct ttccacaaac tgaatcatat ctatccccca
      601 gtgtctcaca cacaattcat tattctagtt ggttaatcac gacctagagg ctctgctccc
      661 cctctttcgg aagtttaata gtgtaaggaa ctactttcca cagggtctca tt
//
LOCUS       KCOD01001185             493 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 132412pyr ultra-conserved element
            locus uce-6407, sequence.
ACCESSION   KCOD01001185
VERSION     KCOD01001185.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 493)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 493)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..493
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="132412pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>493
                     /note="ultra-conserved element locus uce-6407"
BASE COUNT          163 a           80 c           87 g          163 t
ORIGIN      
        1 aaaaacttaa gaatgggtat gtgatggtgt tcaaagaaaa tgcagtttag cacaagaaat
       61 gctgaacctc aatttttagc agtgacattt taatgatagg aagtctgcaa aattatttgc
      121 catcaattgt gaaggcaata acaagccttg gtggtttttc acaccctctg tgttaagtgc
      181 tttcagaatg acagcgtaaa ctgtgttgga gaactccaag gaagtaaaac tgattaaaat
      241 gttcatgctt gaatggtgct gatggaatag ttcatttgga ctttctctac ctcctgcagc
      301 tcaagctgaa atattaaaat tcagtgaatt taaatctctc tcccctcagc tcaggaaaaa
      361 aacattacat tttaataggt tttaaactca taattcattg gtttggagca gcactattaa
      421 atctatttaa ctattacttg tattactaag gaaacgattg aaataatttt tctttaccat
      481 tctatgcatc tga
//
LOCUS       KCOD01001186             758 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 132521pyr ultra-conserved element
            locus uce-1304, sequence.
ACCESSION   KCOD01001186
VERSION     KCOD01001186.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 758)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 758)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..758
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="132521pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>758
                     /note="ultra-conserved element locus uce-1304"
BASE COUNT          209 a          166 c          199 g          184 t
ORIGIN      
        1 cccccagctg attatcaacc tcatgcatag caaatgacag agcgggaagc gcctctgccg
       61 ccgaataaaa tatttacaga ctgacaggct aatggacact ttgccaaaga gccgttcgaa
      121 agaagtagta aatgggcccg cgctgatgca gggcagcggg cccggtcagg gatcaggaca
      181 cacggcaccg gatcggataa catctaattg gcaggtcaca tccaaatgag tgtagtcatg
      241 catcatccgg aaggcttttt gctggttata aagacacttg taaacaattc agccgctgaa
      301 catggcaata atatgttgat ccggcatgta atgaggtgtt cctggaatca ataaactagt
      361 catgaagagc agggagcaag gtcagcgcct gcctttttga tgacctttgc tggctggtga
      421 ggacatcata tactctgaag aggacttttc tcatattgca gaaggcgccg agtgtcagaa
      481 cttccattcg cagcaagcaa atgaacagcc gggctctgca tgctaatgaa gtccaggcta
      541 ttttccacct tttcatctgc acattatgct cttgactttg gagaaggtgg gaattaggtt
      601 ggaccctcgt gtcagactgc ctgatggctc ggctccggaa aactggtaat tgaagctgat
      661 gactgatgcg gaggaggcct gaatttggaa ataaacagtt tcaagcactg catgtcattt
      721 ctagagagac tgctgagtga atggaaatga gctctgtt
//
LOCUS       KCOD01001187             848 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 132635pyr ultra-conserved element
            locus uce-3198, sequence.
ACCESSION   KCOD01001187
VERSION     KCOD01001187.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 848)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 848)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..848
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="132635pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>848
                     /note="ultra-conserved element locus uce-3198"
BASE COUNT          236 a          183 c          160 g          269 t
ORIGIN      
        1 ttttggaata ttactgtaaa aaactggaag ccacacttgt attcatttta gtggttatca
       61 ctgtaacagt taacaaaaga cacaaagaca tccataccca aaacagcata tgaagattta
      121 attttttttt taaatggcac atacatttaa atagctccta catttggcaa ggccattgtt
      181 gtggctaatg tatgtatttc tgaaaacaat gatacatttc cagtagtatc ttccacgatt
      241 ttttttcaat gagcaataaa gaaggttgag gtgggatgtg ttttatccca ccacattata
      301 tcattcctct ttttcctctt tgttggatgg caatcaggaa ccctcatgcc aagcttggga
      361 agcaacagca tctggctcct tggcagattc tgcaggcggt cttgttgcca gcctttaagc
      421 tgtgtctggg tctgctgcat ggtttggctg cagatgggct ctctgggttg ccttgtgctt
      481 atgggtgcca gttttggctt acctttgatt ctgaggactt tactcatttt tattcatttg
      541 tgaataagga cccatccaaa tgcttcatga aaccaatatc agagtgtacc gatatttaaa
      601 atgaaaaggg aaggaggccg tttccctccc ccccctcccc aggatgaaac attataatag
      661 catctgcaaa tggatctgga tctatcagta tttccattat aaatcagagg cttagagctt
      721 agccatgaat attcctccca gaatgaaatg caatgcggcc acttgtatca aaacaacact
      781 gaaggttttt tcagaccacc taggcattcc cacactcact tccccttcct tccattttga
      841 agacaaaa
//
LOCUS       KCOD01001188             626 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 132746pyr ultra-conserved element
            locus uce-3565, sequence.
ACCESSION   KCOD01001188
VERSION     KCOD01001188.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 626)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 626)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..626
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="132746pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>626
                     /note="ultra-conserved element locus uce-3565"
BASE COUNT          183 a          144 c          116 g          183 t
ORIGIN      
        1 tgctgagcaa tacacacagc agcaataatt atgaaagctg ttttctatac aaggaagttt
       61 cagcctaact tacaaggtgc tgagtcaaaa ctcacccctc ccacagctga accctgtcag
      121 gcaggatgct gtggaaattg tatggagttt gattataaaa ctgggcagtg gagagctgcc
      181 aggtcagcca tctgtcaaaa ccaaaagcgc tctgcttttc cactattcta ggagctgtac
      241 aaacatcagt gacaagggaa caaaatggaa cctgtgttgt acaaacagga actttttgaa
      301 gtatttctac tttgaatttc ttccgtgttt gcacagttgg gaattttttt gccccttctt
      361 tgattgtact gacatttgct tcctgtaaag tgcacaaaaa ctttactgac cttacgtcta
      421 ttgcttaaag catttcacca cctactcttt tcatgatttt gacaatgcta acaagcacag
      481 gaagagatgg tctgtgagct gcagcaatca caacagaaca tccctgttcc acatgctccc
      541 aaagcacagt ttcaacacag acttagtcat ccacttctct gtggcctgta ctttaactcc
      601 aaagagagac catttttcaa atattt
//
LOCUS       KCOD01001189             601 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 132857pyr ultra-conserved element
            locus uce-6645, sequence.
ACCESSION   KCOD01001189
VERSION     KCOD01001189.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 601)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="132857pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>601
                     /note="ultra-conserved element locus uce-6645"
BASE COUNT          156 a          116 c          126 g          203 t
ORIGIN      
        1 atcaagaggc agtaattaaa accttctgaa tgaaaggaac ttttatacca acatccaggc
       61 atatttcctc tacatctcct taattatcca gctttgtggc agtcgggttc tcatttattg
      121 tgttttataa ctgtgtattc atccagctct tatcacaaag ctggatgctt cggctttgtt
      181 ttccctccct gaaataattt atatgtaagg ttcagcaaat ggaaccttgc tacttgtgtg
      241 aagctgccat ttaaccatga agtgaaatgc ttttatcgag tttgccctgc agatatggtc
      301 tgctgtggca gtgctgtcca tatttggtgg ctgtgcaagg agagccaggt ggtgctgcaa
      361 agcatagcac agtgaagcgt ggacagatct aggtttgaca tttgtcatcc tgtactgcta
      421 aagggaagag aaaaatctgc ttttccatat gcttatgctt taatttttgc ctgcagtttt
      481 gtccagatgg ccttgtgaac attgtttact ttaagatgct gtcccagatg tttttgaatg
      541 ccgatggata aatgcaacaa ctgtggtata ctaatacaca aattatttcc acaattttgg
      601 c
//
LOCUS       KCOD01001190             624 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 132965pyr ultra-conserved element
            locus uce-1191, sequence.
ACCESSION   KCOD01001190
VERSION     KCOD01001190.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 624)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 624)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="132965pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>624
                     /note="ultra-conserved element locus uce-1191"
BASE COUNT          208 a          114 c          112 g          190 t
ORIGIN      
        1 ttttttaaga cttacaacac acattgcatt tttaaaataa catcagggaa actgtgaagc
       61 ttcttttgaa ggattacatt acagctttga tttttattta taaaacataa aggactaata
      121 tatatcagtt aggacatttt gcttccgaag tgcattgtaa caaaataatt ggaaggcagt
      181 tgtggtgtga aatatatgac agctttacag gacataaaaa gcagcttttt ctttgtaata
      241 gtgtaattgc cttaaacccc acaatcataa ttgttatcaa aaaataatcc caaggaaagg
      301 ctaatataag gtgagcagac tattataaga gctctaatac actcaattcc ttgaacggca
      361 aatgcagccc ctcaatctcc cagtgctttt agtgtcagtc agagagcact cagtcatttc
      421 tgtgcatcaa gcctgcagta ttgatttttc cactgactga aacagccata taagcataaa
      481 ttttgcatga ggctttcact ttgtagactc tcctttggtc agatgacaca tgatgtgaac
      541 atgaagactg tataataaca atgcatggtc aacctgcagg cattaaagcg tggtctctca
      601 cagctttgaa ggacaaaagc tgga
//
LOCUS       KCOD01001191             800 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 133076pyr ultra-conserved element
            locus uce-3104, sequence.
ACCESSION   KCOD01001191
VERSION     KCOD01001191.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 800)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 800)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..800
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="133076pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>800
                     /note="ultra-conserved element locus uce-3104"
BASE COUNT          248 a          177 c          144 g          231 t
ORIGIN      
        1 ggtttaaatt ccagtaacag gtttcatatg gtcgctataa catctcagtg tattaattag
       61 cccccaagca ataaaaatgt agccattcaa ggtcacagtt tgacttattt acaattgatg
      121 tataacttgg caaactctgc attcagctac ttcgtacaat agaaaatata ttgtcattca
      181 ggttaacaaa agactctttt ctttgccacc tcactacaat ggccctgcaa atgaacatcg
      241 cctgaataaa atcctaacca cattttcact ctcattaacc acagtagggt atcacacaat
      301 ttgcctggct cctacttaga ccactgtgca ccattttact agcagcagtt tgatgggttt
      361 tatggcaggt gatatatgga gtgggagttt cgggagtcgt aaacagaagc cacagtgtat
      421 cacaatgtgg tttagggata taatgactgt gttgtaaagc aaaggatgac aatactgcac
      481 taggcttgag gtagtgaacc aatagaccaa acagctcaac ataattcaag ctacaaacag
      541 agcatcctag gtgtgtgctg gccttcctat atctttcatt aattacccct gatgaatttg
      601 aataagaact actaaaactg aaataaatct gcagccaaga gaaaaattat agagtttctc
      661 cttgtatttc ttggaagaag ttgctctccc ccgtgcatac acagacccca tattaccagt
      721 tcttaaccag ccttttgtat ctccagctag acagtcccct tggctcctgg ggctgcgctc
      781 attaacacac tagaacaaat
//
LOCUS       KCOD01001192             549 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 133289pyr ultra-conserved element
            locus uce-5773, sequence.
ACCESSION   KCOD01001192
VERSION     KCOD01001192.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 549)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 549)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..549
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="133289pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>549
                     /note="ultra-conserved element locus uce-5773"
BASE COUNT          154 a          123 c          104 g          168 t
ORIGIN      
        1 ccgccgtgcc aggaggtttg taacaacaaa tctggcattc cacaactacg gcatctcgct
       61 aacgggctga ggcaccagag ttcagtaatg taatataaaa agtaatggtg ttagctaaca
      121 catccttaat aagatattgt ctgctgctct gccatatgct accgagcagg ctttccctct
      181 gtggggcttt tgagttctct caataagatt atttcaaata ctctaatcct gaatcattga
      241 catgaataca aaagcctagt gacatctaat agatgcctct tagctttgct tttcctcttg
      301 ttcctttcct ttttcttccc tttttacctg acaaaaagct tacagacact tgggctctgt
      361 ctctcagtac cagcatgtgg gtcccctcat gaaatataaa ggaggaaaaa gggctgacat
      421 agggctgata agccacaaaa ggaccataga attaaaagtt aatgcaagta aatcctaccc
      481 tgtacactca gttgttcttt ttttctttaa ttctttcagt gccatgctgg gctaatgaaa
      541 aatggggct
//
LOCUS       KCOD01001193             787 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 133400pyr ultra-conserved element
            locus uce-3416, sequence.
ACCESSION   KCOD01001193
VERSION     KCOD01001193.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 787)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 787)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..787
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="133400pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>787
                     /note="ultra-conserved element locus uce-3416"
BASE COUNT          299 a          131 c          124 g          233 t
ORIGIN      
        1 cataagaaat tctagcctaa tcatgcaacc ttcgtgctaa tttaaaaaat agtccttgat
       61 tttgaaataa agttgaaagt atagtgtcag tacaaagtga aagagttatc attagccttc
      121 aaatgtgaca aataagaaag acacaaacaa gtgtcaggat aattaaaaag gcattgttca
      181 ctttttagaa gaaaaaaatg aattgcatga gaaatattaa gctaacaaag aaagagcaaa
      241 tatgagtaga aaaaatgaca gttatctgca aaattcataa atgtgtcttt tgtataaccg
      301 taatgatcat attttatgct gtcattttac atttaattgc tcaccctggt actttacttc
      361 atagaagcca tcagtacccc acagagccag atgctgaatt gcaaaaaaac atactgtgac
      421 cacagactta taggaaagta actttgctga gctgtggtgt atgacaagtt aatttttgca
      481 attatacttt ttccaagaat aaatgaaact gcaggtcatt actattctat atcattaaaa
      541 agaggcagaa aatgttcttg atcataaagg cctcaaactc attttatcat tactttgaca
      601 tatgaaagca actttacaag ctgcttttcc tcaatgtgac ctaatgaaat aagcaccacc
      661 tcagctgaaa tatgtaaaca tcttgataca ttaagaagca cataactaaa gaaaattgtt
      721 attatgacac agtgctaacc catcatatgt ctagcaggaa ggaaatgcta catggcctct
      781 gcttact
//
LOCUS       KCOD01001194             752 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 133511pyr ultra-conserved element
            locus uce-408, sequence.
ACCESSION   KCOD01001194
VERSION     KCOD01001194.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 752)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 752)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..752
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="133511pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>752
                     /note="ultra-conserved element locus uce-408"
BASE COUNT          212 a          155 c          171 g          214 t
ORIGIN      
        1 ctgccatcct catccttctg gccagagcac aggagaacag gctcagactt ggtgctcagt
       61 gctctgcctg agcaaaggaa ggggacttga gcatcacctc tgttaatatt tatgcccagt
      121 gggcctggaa ctggattgca gttgtttttc tgaatgaagg agacgtaaat tatgtgtaaa
      181 tccaacatgt ttagctccat aagtttttat tatctttccc tcattaagaa gctttcaaaa
      241 tattacccag tcactgaagg ttctttaaga aaaatatgac tgctcgtgta aacaattaat
      301 ggttgttaag cgtggcagtg tatattatga caaacaacac atgctacatt atgccagctg
      361 gtgtaatgat gtgataatgt ctgactcatt aactctggca cacagtttac gatgcccttc
      421 tatgacagga ttaattgatt cacacataca ttaaaacaaa aataactaaa ctgaaattca
      481 gctggaagcc tggcttctca tttgtcatca accctgttgg tggctgcagc cagtccgagc
      541 ccagtgcaga gccagatgag gtttgtcccc tgacctctgt tcagctccat gagtaccttg
      601 tggaagggag gaggtgatac tgaagggccc cgtaatgact ttcaggtatt ctgggactgt
      661 ttggatcaag tgaaagagtt gaaaggtgaa aatacctttt tgcctgagta aagccaatgc
      721 atggcgtctg tacagagcca cgagctagtt aa
//
LOCUS       KCOD01001195             693 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 133622pyr ultra-conserved element
            locus uce-2471, sequence.
ACCESSION   KCOD01001195
VERSION     KCOD01001195.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 693)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 693)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..693
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="133622pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>693
                     /note="ultra-conserved element locus uce-2471"
BASE COUNT          215 a          122 c          135 g          221 t
ORIGIN      
        1 ttaaatccat tttacgtgaa actgttaact ttttcaactt gggcaccttt tgaggtcttt
       61 tgtttgttcc atcagagtca ctttgaatta aaacacaagt actccatgaa atgtgtgata
      121 aaaagcacct gacaatttca agaggttaag tggccatgat ctacactgtc tgtactgcag
      181 ctgagaagga gatgcagttt gacacagtat ctaatttgct gtgacattca agttttaagt
      241 gatgttcaag gagatggaag tcctgactct aaacatatcc caacgtgtgc tggtcttctg
      301 tctgttaact tactaatgaa ccatgattga gtaaagtaat gaagagttta cagagagccc
      361 caggaaacca atttccaatt ttgcaaccag caggctttaa cttcactgca gtcttttttt
      421 gtctaggagg ggacttggat actaaatgcc atttctgctt tgtgaatcag acagactttt
      481 ccagtccctg aatacttact tgctaatgaa tgtctcttct acagatccat tttgtttcca
      541 tctgcagttg ttaaaaatag gctgaataac taaaaatgat tactgagaga aatgaaatta
      601 taatcacaaa atcagatgca ctgttggact catggtgaga aggaaatttt aatcttctct
      661 gggatgaatc atggaaatag gtgaaaaata cag
//
LOCUS       KCOD01001196             687 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 133731pyr ultra-conserved element
            locus uce-1919, sequence.
ACCESSION   KCOD01001196
VERSION     KCOD01001196.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 687)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 687)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..687
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="133731pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>687
                     /note="ultra-conserved element locus uce-1919"
BASE COUNT          233 a          123 c           98 g          233 t
ORIGIN      
        1 tttttcagcc tattaagttc tccagtatca gaatgaagcc tactaaaagt tagtaaataa
       61 aggctttcag gagagcttta ttaaatcact tatgacttat caagttaaaa ctcccactca
      121 gatatcttaa taaaactttc agagaatata tttaattttc ctggaaatca gaagccaatt
      181 actaactaca ggagttactg ttggctatgc cactgatcaa tttgccaaca acttgaatta
      241 gttctctaaa gtttcggttt ctgaaggtca aataactatg taactgctta ataaagaagc
      301 aaagaagtac ctctaaatat ctccaagctc tgatgggctt atattctgct ccttaggtga
      361 ggtattagca aagcttattt attttcattt ccaaggcttt tatttgctca ttcccttgtg
      421 gtaaagctga tttccatgat gattcccttc ttaattttaa tacccttttt actcatcata
      481 tagacataag aattttccat aaaataatga aacccttcca aaggaaatga agacaactag
      541 gagaggaaag taaactacag cttacttttt cccaattaat tgatccactg tcatatgcat
      601 atatgaaaga tttaatgaaa ggaaaataag gttaattaac ataaaacccc tcactccttg
      661 agatgttgaa ttttgtattt tatccat
//
LOCUS       KCOD01001197             603 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 133839pyr ultra-conserved element
            locus uce-1478, sequence.
ACCESSION   KCOD01001197
VERSION     KCOD01001197.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 603)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 603)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="133839pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>603
                     /note="ultra-conserved element locus uce-1478"
BASE COUNT          194 a           98 c          111 g          200 t
ORIGIN      
        1 gcttgaagga ctgaacatgc cagtagcaag ttctgcttca gaatccaaga ggtgtatcag
       61 ctagactaat ttattcggtg tcattgctgc atcacaagct tctgtttgat tttcttataa
      121 actaataatt tcctgaatgg actaatgctg ccatagctac tagtacctct ttttttattg
      181 ttgtgtatgc aactaaattg aaatatcttt cacttgaaat attgacttta atatctcatt
      241 tgaaaaattc atgaagcctt tgatgttaaa tccatactca atttagccaa atgccattag
      301 aatatgcaat atgcctgaat acagagagca ttattgtctg tgtttctgca gaagaattac
      361 attttatgac tgtaacgtca ggatcttttt tggatttgtt catgaagaaa agaaagagaa
      421 aggcagcaca ttagaagcaa aatgaaaagt ggtattgatt aggctctcat ttaccctctc
      481 tttgcttgaa tccctaaatg catggaaata agggttgtgc cacagcaagt aacaatgctc
      541 tgtaatgaat ggaacaatct ttagaaaatt agtgtaaaca cgtatgatag tgcacagatg
      601 ttg
//
LOCUS       KCOD01001198             311 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 133946pyr ultra-conserved element
            locus uce-3341, sequence.
ACCESSION   KCOD01001198
VERSION     KCOD01001198.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 311)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 311)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..311
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="133946pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>311
                     /note="ultra-conserved element locus uce-3341"
BASE COUNT          129 a           48 c           39 g           95 t
ORIGIN      
        1 tagtaaacct ctttaaaatg ctaacaaatt tacttacaaa cacctatatt tattatttca
       61 taaataggcg caacaggttc cataaaaaag attaaataca gacacagtat gaagaaacaa
      121 taatacatag ccatatgtag aggttataat ttagctgtct ccaatctgtt tctgcatcta
      181 ataaaatatc aggtaagcat aaaaggactt aaatgacgtt tactaaccag tacacataaa
      241 gtgattttca aaaaaaaaga agcatttttt aggcagtaca aaataaatgt gtttgctctt
      301 tatcaacatt a
//
LOCUS       KCOD01001199             394 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 134055pyr ultra-conserved element
            locus uce-7704, sequence.
ACCESSION   KCOD01001199
VERSION     KCOD01001199.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 394)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 394)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..394
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="134055pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>394
                     /note="ultra-conserved element locus uce-7704"
BASE COUNT          132 a           68 c           83 g          111 t
ORIGIN      
        1 ttggtggaga ggtacagaga ggatattatc taaacttcca gtgaatcaca gctgacagtg
       61 ttgctatttc taggccagag aatcactctt tgaacaaaat gcaattgctg tgtcttttca
      121 acctgcgctt cagcagagtg aaacagcagg attcccgtac tgtataataa ctgtcagaaa
      181 caatttctgc tctgtaagtg aggtgaagca aaatgtcaaa atatttgaat acatttcatt
      241 gaggatatct tcttttaaat tagtgaaggc tagaggaaga gaatcctatt ctctcgcata
      301 ataaatatgc atggagcagt ggggccaagt gaattctaat aaagctaggt ccttgctcgt
      361 taatgcgtta gagaacaaca acaataaaac acaa
//
LOCUS       KCOD01001200             628 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 134267pyr ultra-conserved element
            locus uce-7831, sequence.
ACCESSION   KCOD01001200
VERSION     KCOD01001200.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 628)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 628)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..628
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="134267pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>628
                     /note="ultra-conserved element locus uce-7831"
BASE COUNT          156 a          139 c          137 g          196 t
ORIGIN      
        1 gtgcttctgg attgcatctt tgcatatgaa atttcagcct agagctaatt gttactgttg
       61 atgaattata aactgttttg aaattctggc acgttcttga gtacagtagc atgatcttgc
      121 ttccctggca aataagccat ataagttctg ttaagtcatt cacagttttc aaaccctcat
      181 gcatttcttt catgattccc ctgtggagtt atccttgttg ttttgagaag gatagtctca
      241 agtctgagcc tgtacttcca agtcctgctc tctgttgcct taggagtata caaaggttta
      301 gattgcatct tttcaatgca ttatggcact gcagcctaaa gccaatgctt gttttttaac
      361 tggcaacctg cctgtacgaa tggaggaagc agattgcctc tttgctgaac acttagacaa
      421 ggtactgatt taacaacagt ggacaagcag ctgggagctg ggctgtcagc ctgtcacaca
      481 ctgacaaatc tgttgttcat attcaggcag gatgttccag ttagattgcc atcagtatca
      541 tccatctacc acaggcgtgc gaggcgcacc ggcgtctccc gcgctggtga ttcagatttc
      601 tgggggaacc tcaagaaaac agctaatc
//
LOCUS       KCOD01001201             569 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 134374pyr ultra-conserved element
            locus uce-6613, sequence.
ACCESSION   KCOD01001201
VERSION     KCOD01001201.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 569)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 569)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..569
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="134374pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>569
                     /note="ultra-conserved element locus uce-6613"
BASE COUNT          168 a          108 c          115 g          178 t
ORIGIN      
        1 tcactgtcct gaacagccaa tgtcatccac tgagtcagtt atttgccaaa atgcaagaaa
       61 cctgaaataa tgtgtttgtg gaaataaata gtgggtggac ctgacttttg tggcgtgaaa
      121 gtcaagtgga gcttttaatt gactccaaca ggcgctggat caggcctgtg gggtgtttgg
      181 tgctcagtta caagttagtg ctctctctaa tcaccttgtt ctctaaagga aatagatact
      241 aaacaggaac catctggtaa tacattctgt acctcttaat tacaatgttt tgagtggcac
      301 ctaaataaat ttcatttaca agcacatgac tgcttgtcaa aagctctgtt gataatttta
      361 ttattgtagt ttaccttctc gcttaatgac cccggcccag taaagtcagg aatattcagc
      421 tctactgcag tgattgtctt tagaaagaca caaactccat ctctcatggt gtccttctaa
      481 ttattttcaa attacacatg agatagggat ggatctgcaa taaaaattac caaaattctg
      541 atttcttggt agagaggaga agctgaggc
//
LOCUS       KCOD01001202             422 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 134480pyr ultra-conserved element
            locus uce-4167, sequence.
ACCESSION   KCOD01001202
VERSION     KCOD01001202.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 422)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 422)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..422
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="134480pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>422
                     /note="ultra-conserved element locus uce-4167"
BASE COUNT          155 a           63 c           70 g          134 t
ORIGIN      
        1 caatagaaag tgcaaaaatc aactgaaata ttttcagaaa taatttaatt ctcatgtcac
       61 tgctgactga cagctctaat aaattcctac attttaagca gacttacatt tcacatgcat
      121 ttgctctcca ctgctgagca gagtggaaca tctattgtca aatgcataaa ataacattag
      181 aaatgcaaac ttaatgtagc caatggtaat gtgttattta aaacttatga gcctgaataa
      241 gggcttattt tctctaaatt gaaatttata gtttcatttt gaagtgctaa cttgaatatt
      301 gatgggcttc aggcatgctg ttataaaatg ggaaagaaaa acaaagcaag taactatgag
      361 gcataaagct gctattatgg taatatatgg aaacttatat aaaaagtgga tcctagttac
      421 ct
//
LOCUS       KCOD01001203             534 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 134587pyr ultra-conserved element
            locus uce-7793, sequence.
ACCESSION   KCOD01001203
VERSION     KCOD01001203.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 534)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 534)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..534
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="134587pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>534
                     /note="ultra-conserved element locus uce-7793"
BASE COUNT          151 a          103 c          109 g          171 t
ORIGIN      
        1 gaaatcctcc ctctgcttta gggttatacc ttctagccta atttaatttt tgggggtgtc
       61 tgaatatcac cctgcccttg acataaagag tagtgtgagt ctttgtgccg tgttgtgcaa
      121 aagcagagaa tggtttcttg tattcaaagc ataaacgcag cggcccatga gactgcttgg
      181 atgaggacta gataagagag ttacattagg gcagaaattc gggtcacatc atatcaaact
      241 gaaagcatga ggccaaagat aggcttggct aataatattt atacacaatc atttaaaatg
      301 tgaaaacttc tgccatgcaa gaaacctcct ttcagtctca agtgcaggta ttttcaatac
      361 cactgtttgc tgcatttgca tcttctttgc attatttatt gttatcctgc aggctggatt
      421 gtcacactaa gcatgattta tgtcactgaa ttttatcagc ttctgccaga ttatattttc
      481 aagtggtgcc taggaagaga aatgtcagtg caagtctttt acacctgtta caca
//
LOCUS       KCOD01001204             593 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 134694pyr ultra-conserved element
            locus uce-3309, sequence.
ACCESSION   KCOD01001204
VERSION     KCOD01001204.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 593)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="134694pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>593
                     /note="ultra-conserved element locus uce-3309"
BASE COUNT          192 a          115 c           95 g          191 t
ORIGIN      
        1 aaagtaacac atgctcagag atggataaca ttaaaataaa agtaggtaca gggtccaaga
       61 tgaacatttc tcatgagcag agatcacgcg agaaagcatt ccacaggcat aactttgcag
      121 ataatcaaag ccaagtatta atacattttt atcagtccac cttctaaaca atatttcagt
      181 agatttcctt tcacacagtg atatttgtaa taaatgttct gcctttgttt taaagtcagt
      241 ccgtagaaag atgacatcag cttagcaaac aataaagtgc ctgtaatatt gtctccagag
      301 ggctgttaca tttactttgt agcagtaaaa ttcaattttc aaaaaacact acatgaatga
      361 tgttaggtta ttaaccctat caccaccgta aaacatcatc attgtgtgca gaatgtaggt
      421 cactatccag gagctagaag ttgctttttg ttaaataatc catttaatct gcttttcttt
      481 cctatagctt gggttgtgtt ccttcccttt gcaaaccaaa aaacagtctc atttctaatc
      541 tcaaggctct gagtaagcgt ccttattaca catctcattt taaggtgttc ttc
//
LOCUS       KCOD01001205             840 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 134804pyr ultra-conserved element
            locus uce-1490, sequence.
ACCESSION   KCOD01001205
VERSION     KCOD01001205.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 840)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 840)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..840
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="134804pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>840
                     /note="ultra-conserved element locus uce-1490"
BASE COUNT          252 a          146 c          183 g          259 t
ORIGIN      
        1 taccaattct atgaaattag ttctgtgcct ggatcttcca ttccctgtgt gatgctttaa
       61 cctgggaatt cttataacag atactcctca aagaatctca tagacgagct ttatattgaa
      121 atcaagcaat cagctagata gtttagttgt ctttatttga gagcagtaaa tctttttagc
      181 aagtggaata aaccagtaag aataactcgg aaggcattta gggaattaca caaagggtgt
      241 gtggtttaga ccttttctgg aacgcaggct gcagtttagc tgtcgagtca ctatcattct
      301 cctcaaaggt gaaatgattt agaggcctag agaaacttaa tttttcttga tcaccatgtg
      361 caacctggaa ttttaatggc aggcataatt aattcttctg atgttaatca tcagggctgg
      421 gctccacaat tatcagccta gtgcagctgg ggcatggtgc agacatgaaa aattaggaaa
      481 atgaatcagt aatagggtgg cagatttaat ctgcatcatg aaaacaaagt taaaaagagg
      541 gagatcgaga gaatttcagc tgaagctttt gtgccaatga gcactgacag aactgaaaaa
      601 tgttgccgat gtccaaagtg attggtaatt accaagccat tgaatttttt attgtcaatt
      661 tatcattgcg ccagaggtta aatttaacat cttcttctaa agccatcact ctaggaggaa
      721 ggcaagcttt gcatcacgtg gaccaggagt cagtgaaagg ttaatcaggt attcctttag
      781 tttgtgtgtg cttccaaatc agtctttttg tgtcctttat gctgcataca taccgtgggg
//
LOCUS       KCOD01001206             254 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 134914pyr ultra-conserved element
            locus uce-2083, sequence.
ACCESSION   KCOD01001206
VERSION     KCOD01001206.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 254)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 254)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..254
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="134914pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>254
                     /note="ultra-conserved element locus uce-2083"
BASE COUNT          101 a           45 c           27 g           81 t
ORIGIN      
        1 aaaccctttg tagttgttct tttattatta tttatgaaca cctaggcagt gaaaactgtt
       61 atgttaatac atacattgac acacccaaaa catacaaaaa tactattatt tcaaactact
      121 aagaatagga caagttcagt tatctccatg ctatgacttt aagagcatta cactgaaaca
      181 aacaagaatt taaacgacaa ttttttaata tcccagaaat ataccaaaat atacatctaa
      241 gctttggaat tact
//
LOCUS       KCOD01001207             703 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 135022pyr ultra-conserved element
            locus uce-1480, sequence.
ACCESSION   KCOD01001207
VERSION     KCOD01001207.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 703)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 703)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..703
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="135022pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>703
                     /note="ultra-conserved element locus uce-1480"
BASE COUNT          210 a          169 c          128 g          196 t
ORIGIN      
        1 aaaagcttga ttttacaaac tatttaatgc actctaagga tactgttaaa agacactggc
       61 atgttgatgt gagccgtaca aaggtcagtg atttggaggc tctttcagac aatttgccag
      121 gattttggca ttttgtaagc acacatagga cagctctcca gcaagctgac cttgacagtg
      181 aattggataa ataaaccttc aatttacccc ctccagctcg atgctagccc agctgatccc
      241 tctggagcct tcacctgtcc atatcgttca actgcctgca actttcagct gacgaacatc
      301 cacagcttta caggttctgt gacaaacacc atctaacaga taaggcttct gaaaagtcaa
      361 agtcaatagt gtttccattg aaaatttaat gctgcttcca tctttaccca tcattcttcc
      421 tactgttgca tgtatcccag gaggcacttc aagcaaaagc actactccat aacaggtaat
      481 gacgtggcat ttaatgatac tgtccaaagt gatccaagcc catggaaagt aatgtgcact
      541 catgtaccag ataagcacag ctgaatgtac tagaacagca gtatctctca ctgcactgtc
      601 actagataca atgtgacata tgctctgcca ttgtacctgg cttttccttt tacttcacca
      661 tcagaggaaa agagcatttt cagatacaga gcaccaaagt gtt
//
LOCUS       KCOD01001208             438 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 135136pyr ultra-conserved element
            locus uce-5273, sequence.
ACCESSION   KCOD01001208
VERSION     KCOD01001208.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 438)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 438)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..438
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="135136pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>438
                     /note="ultra-conserved element locus uce-5273"
BASE COUNT          102 a          120 c           89 g          127 t
ORIGIN      
        1 aaatatctta attagctgtt acccccctga gccatatggc caccatgggg attttaatac
       61 actgctccat tttatgtcat cagttgcgag ctgtggattc actctcacct ctgaagtgaa
      121 aacagggccc atctgtcggt gatagcgcgt attcttttat acatttcctg cattgcatat
      181 gatttcaaat atttgctctt ggaactgcaa ggtgtcctac tgtcataaca gtcaagttat
      241 tcattaagct gtcagcacct ttttccattc cccctcactc atcgccgcgc gcggcccctc
      301 agaacgggtg caactgagat cctcatgtca acagaaaagc cctacctttt ccattgccac
      361 cccgaatttc cgagggcact aatggagggc cagctctgat gcagttcttg gcacgcactt
      421 ctgagggccg tgaagtat
//
LOCUS       KCOD01001209             697 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 135242pyr ultra-conserved element
            locus uce-4138, sequence.
ACCESSION   KCOD01001209
VERSION     KCOD01001209.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 697)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 697)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..697
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="135242pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>697
                     /note="ultra-conserved element locus uce-4138"
BASE COUNT          233 a          116 c          115 g          233 t
ORIGIN      
        1 tcactatttg cataacagtg cctaaaagaa attaaaaatg gaattggaac tttggcattt
       61 ttacttaaac gcagtacatg aaatgaagac attgcatgac tgctcatttt aatgtaacat
      121 ccattttgat tcttcatcac actgtacatc tgcccgcttt ccccagctat ctcatgttct
      181 gtagcatttg tattgtgctc ctgaggatgc tttattggtg aactacatta aattcatcta
      241 gaaagaactt taaaaaaaag ccttttcata tgcccttagg attacttggc tagacttgaa
      301 tcaatttatg catttgatgg ttagtttcag ttgtcatgga taaacaaaag ggtaactgtc
      361 tagaatatat caaatattgt ttcattttga aatgtatgtt tccagctata cacatctcct
      421 accctgtttt gtaaaagtat tctgctgata aaatgtagac ttatgtttga cagcttttta
      481 atcaagttca aagagaataa ataaaactaa tccagtgtgg taaagagtct gtctggttat
      541 cgatttgttc ataaaatgaa aaataaacca tgtacataag atgtgtgaaa cacagatcca
      601 gaagcaaata tttaaagcaa ttaaagaccc caaaacatag gattaatgca taggtttgct
      661 gtgcattaga gatatgtctt cagtatcacc tcagcag
//
LOCUS       KCOD01001210             619 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 135351pyr ultra-conserved element
            locus uce-6356, sequence.
ACCESSION   KCOD01001210
VERSION     KCOD01001210.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 619)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 619)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..619
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="135351pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>619
                     /note="ultra-conserved element locus uce-6356"
BASE COUNT          188 a          131 c          122 g          178 t
ORIGIN      
        1 gaagttttgc tgctgatcca tgctgtcttt gcagctctgg aggcagctga caacatgcat
       61 ttaagggatg tcccccagcc tctgccccca ccagcctgct attaactggg ttaaaatgta
      121 tatgaccata gaataagcat ggagcatgga tgagtaggag agagggagga cctcggggcc
      181 aggcagttta caaacaggca tcacagccac tctgtccttt gccccctctt acatttctta
      241 ttacagtaca ttaaaaccct ttgctctgtc aaattgacaa aggcagctat aaaaggggtc
      301 ctttctaata cacagtaata taaactatgt ttgtacactt accacataat ccctaattac
      361 ttccatactt ttatgtgtgg agagctttga cgcttgcatt gctggatact tagtgaatga
      421 aataaaaatc agaaattatt tctgtataag tatggggtag tatgtggtat gtgaattagc
      481 ttctaggcgg gagacagagc tcacatttca gaataaatat actaagtgtc attgatcccc
      541 taagtgttaa ataaaaaact gtgacaccaa caaaactctc atatgaccct gacattcctc
      601 cagtacttaa agtaattac
//
LOCUS       KCOD01001211             680 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 135460pyr ultra-conserved element
            locus uce-4179, sequence.
ACCESSION   KCOD01001211
VERSION     KCOD01001211.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 680)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 680)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..680
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="135460pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>680
                     /note="ultra-conserved element locus uce-4179"
BASE COUNT          199 a          164 c          169 g          148 t
ORIGIN      
        1 cagctctggc cgtcctcagc acagcctccc cgcgcagaca gaccgactgt attttattgc
       61 gtgcagatat cgacagatga gaaaattacc gtgcccataa actgaagctt tggtcacgtc
      121 agttcaagaa gcagaataga gccaagaaac cagcttgtgt cagtcaggct gacgagtgca
      181 ggcgccaaaa accacacccc tgtgagactc aagcacccgc acgcacgtag agaccccgct
      241 cctcttcatc tattctcagc aactgtttgt ctgaggccac atgcaactgg atttgtcaag
      301 ccccctttta acaacttctt gtcacagtcc attaccaaat tgcatatagt tatatattcc
      361 actaattagg cttctaaaat atcattaaca tgtctcttga tcattagcat aacgtatgag
      421 gcgtcctcgt taggcacgac tcgagtttgt taatgcggta atgaaaggca cggggctggt
      481 actgcaggag ccatgcagag ataggaggct gagaacatca aaagcagcag tgccaggctt
      541 caacaagatc agcgagaagc aggggcagaa gccaattgct gggaaaccag gttgatgtgg
      601 aaggtgaaat ctggatacag cacaggtaca ggaggatgac agaaggatct gggtaaaatg
      661 ggagcaatgg ccagggtcca
//
LOCUS       KCOD01001212             544 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 135573pyr ultra-conserved element
            locus uce-7653, sequence.
ACCESSION   KCOD01001212
VERSION     KCOD01001212.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 544)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 544)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..544
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="135573pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>544
                     /note="ultra-conserved element locus uce-7653"
BASE COUNT          162 a          119 c           84 g          179 t
ORIGIN      
        1 gaagtcgtgc aggacgtaca tttttagtca gttcctgatg ggtgactttt ataaaattgt
       61 cctgctccaa ttcttcctga aaaatacagt ttagagggag tattgtcaaa aattctgctc
      121 tactttatta tcccctcatt ttttttgtca tttaactcca attatgggat gctaagtgct
      181 tttggaaatt tcattgttaa tatcttctta cagtgctatt aacgtaaatc aacgttaata
      241 gtgtcccagc aagtataaaa gcaatcaaaa attcagtact cacgaatcat tctgtaattt
      301 cagcataaaa tgttaataga aataaaatcc aataccataa aatatcagca aattcaactt
      361 taaatacatg tgatgaatga ctttaccatt ctacagcatc ccgtggactt ttgcagggga
      421 aacctcttct cagcaaaggt ctcgtcccat ccctccctcc tccgttgcct tcccggcaca
      481 aggtgtgccc aggattttac ttttccagaa attaaaaatc catcctccct tgcgatgtgg
      541 catc
//
LOCUS       KCOD01001213             509 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 135682pyr ultra-conserved element
            locus uce-4180, sequence.
ACCESSION   KCOD01001213
VERSION     KCOD01001213.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 509)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 509)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..509
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="135682pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>509
                     /note="ultra-conserved element locus uce-4180"
BASE COUNT          157 a          108 c           78 g          166 t
ORIGIN      
        1 ttgtggacct tcaaaatatt gcaagtcaga atccactatg ctttatttgt attgctttaa
       61 aaggaaagtc tggattaaac tgatccttca cttttctgca ttcacaggaa gttattgttt
      121 tgataactga gccactgcca attattcaat ccctcttatc catccccaaa tgcatcttct
      181 ttcattacta aaattacaaa ttggccaatg aagtacactt tgaaatttaa tcttcatcta
      241 cctacatttg cagtccttct ggtttttggc aagttcaaag ccaggtctac attcacaggc
      301 aaccccacct ttgggtgtct cccggcagat gtgtgcacac ccatgatctt tgttcataca
      361 gttcataccc tctgtggaaa gaaaaataat gttagtatta agattacaag catatccaat
      421 cataatttta tctgtaactt ttatctggat cgtgttccac aagacgaaag aacagagctg
      481 aaaagagatt catagtcata ataaaagac
//
LOCUS       KCOD01001214             705 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 135794pyr ultra-conserved element
            locus uce-1995, sequence.
ACCESSION   KCOD01001214
VERSION     KCOD01001214.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 705)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 705)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..705
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="135794pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>705
                     /note="ultra-conserved element locus uce-1995"
BASE COUNT          192 a          144 c          156 g          213 t
ORIGIN      
        1 ttttcccaat ttgactcgct tgcccaatcg tatttttact tcagccttta ggcttgaaaa
       61 agcatgtgca taatcagttc attttgtgtg gtctaggcaa taaaaatgcc ccctctgttc
      121 tttccatatg aaaaacgtgt ttttaatttt ggggaactta tataattttc tgtgctttct
      181 tttgtatctc agattaaaaa caaatgctcc cttcccctaa ctttgcatgt tccaattacg
      241 gagttgtgaa aataagtcat ccttcagctt ttgttacttt aaaacagcta tcggtgatgt
      301 cagagtcaat actaaaagca ttaagaatgc tggcagaatg taatgcagct gcaatccaac
      361 atgatgttgg aaatggggtt gagagcataa aggctttcca tattcccagg gcgcacaact
      421 gctcgcggcc ttggctttga tctcttcaaa ggctgctgcc tcctcctaga tggagagact
      481 tggctgccac tcgctcgcat tgaaaaaagg cagaggtctc tattcaggca gaaatcaatc
      541 actgtgcaga aacaattatg tgtaattcaa ccatcatgaa aacagggtga gattatgggt
      601 ttgttacctg agtgactgcg tggagatggg gagcagcgga cgcgggagtc ctgctgacat
      661 gccacatctt gatgacaatt atagacacat gaatgatgtg gcggg
//
LOCUS       KCOD01001215             511 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 135905pyr ultra-conserved element
            locus uce-7928, sequence.
ACCESSION   KCOD01001215
VERSION     KCOD01001215.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 511)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 511)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..511
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="135905pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>511
                     /note="ultra-conserved element locus uce-7928"
BASE COUNT          140 a          143 c          127 g          101 t
ORIGIN      
        1 cccaggggcg cggaacatca cgactcgaga actatggggc aggataggga gaggtggggc
       61 tcctctcgtt cgtcccccga tatctcaaat tgtgcgttgc gatgagaaaa agtgcagaaa
      121 ccaggtggtt tgtgaaggat taatcctttg cttgcttcaa atctgaacag gaatctccac
      181 acaaatgccc cacatgtgga agaaccttta atcaaagaag taacctgaaa actcaccttc
      241 ttacccatac agacatcaag ccctacaact gtgagcagtg cggcaaagtg ttcaggcgaa
      301 actgtgatct acggcggcac agtctaactc acaccccgcg gcaggacttc tagagcagcc
      361 agggacccgc gcccgctccg gcagctccaa cttgcccact ttactcaagg agtgtattgt
      421 aggaactcac agcacacaca cggagacacg cacgcagact cggggccaag ctttcctacc
      481 acatgtctgc gaaactcgtt tagagagtgc g
//
LOCUS       KCOD01001216             273 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 136014pyr ultra-conserved element
            locus uce-4081, sequence.
ACCESSION   KCOD01001216
VERSION     KCOD01001216.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 273)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 273)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..273
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="136014pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>273
                     /note="ultra-conserved element locus uce-4081"
BASE COUNT          100 a           55 c           44 g           74 t
ORIGIN      
        1 tagctcatta tctccaaaag tctgggaaaa cctagattgg ggaaactaaa tccagctagc
       61 tctctaacaa taatgcagca gggtgaaaag atcaggacca ctttatacac attgtgctaa
      121 ttactgaaag tacttaaagt tgtaattagc ttattatact gcagagaacc taacatggca
      181 tgtctttcaa aaaaaatttc tctccagatc attagtggga aagctaacaa catctgcttc
      241 aaataaaatc aaccaattag ctcaggcaac ttc
//
LOCUS       KCOD01001217             670 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 136123pyr ultra-conserved element
            locus uce-6095, sequence.
ACCESSION   KCOD01001217
VERSION     KCOD01001217.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 670)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 670)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..670
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="136123pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>670
                     /note="ultra-conserved element locus uce-6095"
BASE COUNT          182 a          141 c          130 g          217 t
ORIGIN      
        1 tggtgtcatg ctgcatttga tacaaaagct gaatattcta ttagacaggt cctgtgaagt
       61 taaaaagagg accgggttga gttatctcac catgggaaaa aggcatgcac aatcagatat
      121 ttaacactcc tttgcaatta tgggaatttt tattctctcc ctggtaggga acatagcatt
      181 ttactgcagt gtttcaagtt cgcctccaat ggtatctgat agaagtgctt ttatcccctg
      241 aagatacagt acaaaataca aatcatcatt ggttttatct cagctggagc tgcctatttt
      301 ctaaatgagc ttactctgtg ctactgccca tcaggcacat ttttcatcct tcatccccac
      361 tcttttacta tagctgggtt taagtccttt cttctgtcct ttgttccttc agctcagcga
      421 agtaaacagc aggattgatc ttacactgca ttttggtatt gttccaactg ctcatcaata
      481 gacatgggct gggaatgcac tgactggaaa agaagggcaa gattgaaatt cactttttgt
      541 tctttgtgcc ttttagtgtg cagcggaatg tccctaatct gaaagctgct acactgactg
      601 cctatcaaca tgcaaattaa tcatcaagtg acgagtccca tattcaaaag tctttaaagg
      661 tatctgggca
//
LOCUS       KCOD01001218             490 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 136233pyr ultra-conserved element
            locus uce-2572, sequence.
ACCESSION   KCOD01001218
VERSION     KCOD01001218.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 490)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 490)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..490
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="136233pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>490
                     /note="ultra-conserved element locus uce-2572"
BASE COUNT          144 a           82 c          111 g          153 t
ORIGIN      
        1 ttcattacag agcaattgga atgagattgt tgacaatttc gatgatatga atttaaaaga
       61 atcccttctg aggggcattt atgcttatgg ttttgagaag ccttcagcta ttcagcagag
      121 agctattatt ccatgcatca aaggtatgct taatatcagg cattgtaaaa ttatgttgtt
      181 tagctatttt taatctttat tgaaaaagtg atgtgatggt acaccatctt tcgggactga
      241 cctgaaatgg agagaactca gtactgatca cttaagggga attaaataaa aatgacccgt
      301 gtgggagcag taaatgtgta tcctactttt tttagggtat gatgtgattg ctcaagctca
      361 gtcaggtact ggcaagacag ccacatttgc tatttccatc ctgcagcagt tggagattga
      421 tctcaaggag tcccaggcac tagtattggc ccctaccaga gaactggctc aacaggtatt
      481 gatagtgtag
//
LOCUS       KCOD01001219             447 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 136338pyr ultra-conserved element
            locus uce-6179, sequence.
ACCESSION   KCOD01001219
VERSION     KCOD01001219.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 447)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 447)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..447
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="136338pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>447
                     /note="ultra-conserved element locus uce-6179"
BASE COUNT           92 a          104 c          118 g          133 t
ORIGIN      
        1 ggaggagaag gaggttcact gtatctctca ctgcactagg acaagccagg gggaaaacca
       61 aaggtgggag ccagggagca ggcgggctgc gtgggaagga tctaagcgac ccctttgtag
      121 ctcttcagtg ttggttctat ttatacgttt ccttgcttgt gatgccttgt tttttgtaca
      181 gttttatgta catgcaggtg tagcttttct aaaggagaaa tcctatggca gagtccccac
      241 tatttttcag atggtgacgc ctcttgctaa ggttgtacct caatgtgtga tgcatttccc
      301 tgtgcgggga agcctttttt tccccgggcg ctgtgagcac ctctttccgt tcggagccgt
      361 gagcatgaca ccgtcgtgat cccctcgttt gctgagctgt cagatgacca actccattgt
      421 aattagccct tcctaaagct ttacaat
//
LOCUS       KCOD01001220             471 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 136448pyr ultra-conserved element
            locus uce-4696, sequence.
ACCESSION   KCOD01001220
VERSION     KCOD01001220.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 471)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 471)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..471
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="136448pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>471
                     /note="ultra-conserved element locus uce-4696"
BASE COUNT          167 a           77 c          102 g          125 t
ORIGIN      
        1 gatcctaacc aaactggcaa gcatgaattt tgttagaata ttcagtcagg attatgctaa
       61 atgatgggct atccagactt atcttcaaac taacttaact gctgccttag catcaggaca
      121 cagatggatg ggaaagatga ccctgacctc cataagaccc acattcctgt gcaaggatag
      181 aagcatgata atcaggaaat gatggttatt agttacagaa aatgcattat tgtgaaaacc
      241 aggagaaaag tgcttatgag aggaagtgat tggattatag gggaatgaga gaataagact
      301 aggtcatttc tccagagtaa attgctgtga tttataagag aaagggggta gtgatatcat
      361 ggcttcatat tgaccagatt catttcacaa acaaacctaa atcagaaagc agcagttgaa
      421 tcaaacacag ttttaagaca tgagacacgt cagatacctt tcattttgta g
//
LOCUS       KCOD01001221             739 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 136560pyr ultra-conserved element
            locus uce-1741, sequence.
ACCESSION   KCOD01001221
VERSION     KCOD01001221.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 739)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 739)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..739
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="136560pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>739
                     /note="ultra-conserved element locus uce-1741"
BASE COUNT          197 a          151 c          186 g          205 t
ORIGIN      
        1 ttttatttca gcagatagcc cccaaaaaag gcagggatgt caaaggcttc gagtcccccc
       61 tttgacattc acgcagtgct gagagtcagc cggggtctca gctctgacaa atttgcatct
      121 ctttgaatgt gacgcttgaa aaaagccgga gctgctagat taaatttttt tttttttcca
      181 tcgagaaaat gagaaaagcc tctatctctc cgccgagtct actgggaaga tctttattct
      241 gattcttgtt agaattgttt atcaccctga cagaccagac tcggacgaga taaaggcgct
      301 gctccatcac ggggcctgac agtggtagga catgcagaga aatgaaagga gcaggggaaa
      361 atattattaa tagatgccga cttgatttgc ctctatggca cgtcaaggaa ggaagggagg
      421 ggggagccac ggcttgattg caagcctatg aagttctgtc caaaaaagaa gctatttttc
      481 attaagtgat agaagggctt ttttcatgtt ctttcctgag gagctgataa cttatgcagt
      541 ttattctaac cctgctgatt tctgtcaggg aaagaaaact cctgaaagat ggctccagct
      601 cgtccttttc agagaaggag gctgtcttgt caaaaatggt agcaaggcat taaagccccg
      661 gccttaactc ctgcaaggtc ccttggatgt gattggtgtg tctgtgccca ttggggaagg
      721 agggtgttat tatgtaccc
//
LOCUS       KCOD01001222             652 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 136668pyr ultra-conserved element
            locus uce-4557, sequence.
ACCESSION   KCOD01001222
VERSION     KCOD01001222.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 652)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 652)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..652
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="136668pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>652
                     /note="ultra-conserved element locus uce-4557"
BASE COUNT          233 a          122 c          109 g          188 t
ORIGIN      
        1 aaactgtaca ataattagca ttgtcaatta ttaattatag catggccaca catttatgaa
       61 aatgcagcaa agtaacagcc ttgataattt caaagaatta caccttctgt cacgtttgaa
      121 tatttctcat tttgtctatt attataagtg cagaaaagaa aaagagataa aattttctaa
      181 gccaaattta agcacacact gtttggaccc cttactgccc aaagaacatg tctccctcat
      241 tctaaatata aacaaattaa cttcctatgc atgttgcttc tgagagaatt tttttagagt
      301 ggttttccat cactacaaac cttttccttt cccttatgca ccagcaaaca tactgataca
      361 atttaaaggt catgttcttt tcaaactgac agggccctcc aaaattttga cgagagtccc
      421 tccaagaatc acagcataca aacggaaagg aattaagtaa agcatcactt gatgtaggct
      481 caatcatgtg aactgattag aaaatgtaac catggagaga ggtgattcaa agtgtgacgg
      541 acaacctttc aaagaaagga gatgtcatgt tgataataat aagcaagtac ctgacattga
      601 aggagggggt aaacacagag ggtcaataaa gatataattg ccttcagtca ct
//
LOCUS       KCOD01001223             603 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 136777pyr ultra-conserved element
            locus uce-7628, sequence.
ACCESSION   KCOD01001223
VERSION     KCOD01001223.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 603)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 603)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="136777pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>603
                     /note="ultra-conserved element locus uce-7628"
BASE COUNT          198 a          129 c          121 g          155 t
ORIGIN      
        1 gccacaaacc aaatcaggaa ggaaatgaac cgtaaaagca cgatagtatc tttttgcaaa
       61 caatccattt gtcactttca tggacctggg ttaattaata ttctataaag gtcttccaaa
      121 agctgaatac ctctcaagtt ctgaattcat ggggctgacc ttagactttg tcagaatgat
      181 ttttaatgca gtctgttatc agcaaaaccc gtttaaacac atgccccatc tgccagtacc
      241 ccatttgcaa aagagcttct tatacttgca gacagtaaag cttctgcctg cttccctctc
      301 tcctctaaat accagctgta tggtaatgag cacaaacagc tgaaaaatac tgcacagtaa
      361 caaagctggt acgaagcggg cagaacaacg catccactca atgaggcagt tgtagcatga
      421 atttagcaga ttagcgattg aacaggggtg gggggaggtt tggaaagggt ctacacagat
      481 agcaagaaaa tgaaaagaga ccaaaggggt aggctaccaa agaaaagccc aaattctaaa
      541 gtacttttgt tgaactgcat gaaccaattc ttcaaatttt ctaaggctta ctcgtcctgt
      601 act
//
LOCUS       KCOD01001224             720 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 136890pyr ultra-conserved element
            locus uce-5937, sequence.
ACCESSION   KCOD01001224
VERSION     KCOD01001224.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 720)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 720)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..720
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="136890pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>720
                     /note="ultra-conserved element locus uce-5937"
BASE COUNT          235 a          123 c          129 g          233 t
ORIGIN      
        1 taaaagctat caagcagaaa accatgatgt tatgccagat accaattact gtggtttctt
       61 aatgtgcttt ttttgtttca catttattaa atatttagaa gttcaactgt agatattttt
      121 aatcaaaatc agaattttct cacaaaatgg gtgattacat catttgcaca tttatattgt
      181 aagacatttt aacgatataa gcattttttc atttagacag caaccataat aaattgaaat
      241 aaaattcagc cttgattgat gttctatgtg tcatgtacag ggcaagtccc atctataaaa
      301 tgtggtttgc caaggcagca atattagtag catttgaatg tttttcttat taaggagaaa
      361 aatggtcagc aacatcaata ccgtctgctc caaagaccat ggtaaatgga aactgcctgc
      421 agcacatttg aattcctcac tgtatttggg atgaaggtac gatgcaggca gtgagaaccc
      481 ttgaaaatta ggatagacta ttacagttcg tacgatgaaa gagagaggct gattacaaca
      541 taatggagtg taccatattc atctctttga aatatgacct cactcggcct tttccatttt
      601 acaatcgatt ctctcattcc cttaatgaac ctgtgcgttc atgagtcttc cttggaagta
      661 tgcacatgaa gtattacagt agcagagagt aattgtctga caagcaactg caagtaaagt
//
LOCUS       KCOD01001225             590 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 136997pyr ultra-conserved element
            locus uce-2908, sequence.
ACCESSION   KCOD01001225
VERSION     KCOD01001225.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 590)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 590)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..590
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="136997pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>590
                     /note="ultra-conserved element locus uce-2908"
BASE COUNT          184 a           92 c          104 g          210 t
ORIGIN      
        1 tttaggacaa aggttgattt gataatcata attgcatttc tactgtatct attttcttaa
       61 gtgttagtag atttattgga cttttcctgt ataacctatg gctgatttgc agcttccttg
      121 gtaatttctt agtaggcagt agcaatttct tatatcttca gtaatgtctt gaatgtacat
      181 tttttatatt aatgatctca ccaggagaaa aagtgtactg tgaatgcatg atggccatat
      241 ggaaaagaca atgaagttta gtaattaaaa ctgaaaaggg aaagaactat gcagtaatta
      301 gaacactgat taatcagctg ataattttat cttgattaat gctgctgatt ttcctcttct
      361 tattgaccta ggaaaggtag gtttagacca attaaatata aattattccc ttttttcaca
      421 ttccaggcag cttccagtgt tctaagtcat gctacactta agatgcagca ctgaattgct
      481 cttactaaat tgggcagctc aacaaaaggt aaaataaggt ttatgttcca aacatgctga
      541 tgcttttatc taaggcagaa tcggacagaa tcggttattt cactattacc
//
LOCUS       KCOD01001226             472 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 137104pyr ultra-conserved element
            locus uce-7457, sequence.
ACCESSION   KCOD01001226
VERSION     KCOD01001226.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 472)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 472)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..472
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="137104pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>472
                     /note="ultra-conserved element locus uce-7457"
BASE COUNT          139 a          101 c           79 g          153 t
ORIGIN      
        1 ctcttgcctc taatctgcaa caaggaattt tcaatgttaa aaatgctaat aaaattgatt
       61 caggtaagat gcgcttaata aaatagtgac ataattacac tttgtacata ataatacatc
      121 tgtagtatta taaccttggc tatgagttat gaaatcagtg tattggccaa ttagctacat
      181 aggaactaag acactataaa cactggtttt aaatgtccta attagttact cgctcattaa
      241 ttaactttct gattaattgt gtagcaatct aatttgcaga tgagacactt aaacagtgat
      301 accttgtaac tctttaaaat tcgtaattaa aatacaggtc cgcaggtttc gacccctttc
      361 aaagtttgat ccccttgggt gatgctacgg ctctgttccc tcacccttca caaacgcggt
      421 gtggccccgg gacctgtagg ctcggtatct catccttcgc ctttcgcccc tc
//
LOCUS       KCOD01001227             546 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 137215pyr ultra-conserved element
            locus uce-3922, sequence.
ACCESSION   KCOD01001227
VERSION     KCOD01001227.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 546)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 546)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..546
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="137215pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>546
                     /note="ultra-conserved element locus uce-3922"
BASE COUNT          167 a           90 c          108 g          181 t
ORIGIN      
        1 tttactgttg attcacttat acttcttgaa atttaagaag tcctgcctct aagattttca
       61 ttttggaatt tgagattgta aattaagccc tcttaaagaa aataagaagt ttgctgttgt
      121 ttttaataag attttatggt aagtatggca acggcaagtc tgccagtccc agctttactg
      181 catgtgtgta gtttgagacc cttgaaatat ctggttttag gacatcagca gggggctaat
      241 gaaaaggctt tgttgatttt aacgaattgc aagccactgt agccaaaata aatataatct
      301 gctttttgga ttagttgtca cacatgattt tacctactaa ctgtgattaa agaaccctgg
      361 tggaccagaa gcatagctac tctctagtga ctcttgctaa aatagcaata aacagaagta
      421 aataaaatgt tagggcatta gttatcttta ataaacactg acactgcgta taacgaagct
      481 tcagaaacac tgagtgcagt gtcactcttt ctagcacaga gtgcattggt cattttggat
      541 gtctgg
//
LOCUS       KCOD01001228             694 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 137328pyr ultra-conserved element
            locus uce-5879, sequence.
ACCESSION   KCOD01001228
VERSION     KCOD01001228.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 694)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 694)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..694
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="137328pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>694
                     /note="ultra-conserved element locus uce-5879"
BASE COUNT          215 a          154 c          134 g          191 t
ORIGIN      
        1 aaccatttct tcactttaac ctggctaaac tcacaagaac ccctggtact ggcagcctaa
       61 aaggtgacaa gaacaggtga caggtaaaat cagccctagc acccacaggc catgcactgg
      121 ctcacggcat taaacataac attaccactg ccacaaaagc aaaatggagc cgttctatta
      181 ccaagaatct cgctgcagac aggaagggga ggggtctggt tattgttgca gaccctctct
      241 ttctccaggt ctttaatccc agacttggct tgttgcgctt caaattgaaa tatcctgaac
      301 agatgtaaaa acacatgtga gccactgctc acaagctgtg caaagctttg tttcatctgc
      361 tgatgatgtg agcctaaagg agatcttttt aaaatttcat cactattcaa aaggataatt
      421 aatacgtacc cccaggcttt gattatgcta tacccagtgt gtactgctgg tacaaaaata
      481 atgaggctct catcaggccg aatgaatact tgcagcaaac attcagtttc cataagaaat
      541 ttaagattca gcggtggtac catgtaggtg gcttaatcta attttaattt gtaacacaat
      601 acaatagata agatcatttg tttgtaacca gcacaggcat tttgtttaca tgaaacccca
      661 gtcagcattc agcagatggt ctttttaaag gctt
//
LOCUS       KCOD01001229             764 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 137438pyr ultra-conserved element
            locus uce-3097, sequence.
ACCESSION   KCOD01001229
VERSION     KCOD01001229.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 764)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 764)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..764
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="137438pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>764
                     /note="ultra-conserved element locus uce-3097"
BASE COUNT          244 a          150 c          151 g          219 t
ORIGIN      
        1 taagacaggc ttttacacac ttccaaactc ttctccctga aaattaaccc cattgattct
       61 tcaaatgtta agggtctcgg gcaaaagtaa accaaaggct gaagtaaaat aaccatcccc
      121 ttggaacgaa aaaaatccag aagggattaa ttccatatta tgtatgcgat acacatatat
      181 atgaaattaa aatagagaca cacatgactt gggcatcaga aggggactgc tactttcata
      241 cattcataaa tagctgctga actctctact catgaagaag ctcttgtagg cagtttgggg
      301 atttgaaaat ctcagggacc tcactgtcca gcttacagat gaccttgtat atggccttct
      361 tccaggaagg atcaacatct ttgcctgcga taatggcatt gaaaaactcc cgtaacgtga
      421 tctgagccac ttccaggaat ctctctggaa cctgctgata caaggagaca atggcattaa
      481 tacagttttc aatttcaagt ctctggttct tcaaaggaaa ctgagctaag ttctttcttt
      541 cagaaagggg cttacatagc acctgcattt tctaaatgtg gcagccctct attctcttat
      601 gcaaagctgt tatatatagt actatagcaa taacttttat aacatgtgtt agagatcttt
      661 gtaaagtcta ctgacagaat gtaggtaaca aaatgttact gcttgagttg ggagagtagg
      721 ggtaggctat aattagcagg aggggaaaca agcacaattg tctt
//
LOCUS       KCOD01001230             710 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 137548pyr ultra-conserved element
            locus uce-34, sequence.
ACCESSION   KCOD01001230
VERSION     KCOD01001230.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 710)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 710)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..710
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="137548pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>710
                     /note="ultra-conserved element locus uce-34"
BASE COUNT          217 a          129 c          146 g          218 t
ORIGIN      
        1 tgtattaact gaccaacatg cctgagaaag ctgaataaca taaacttcaa ctggcagtac
       61 cttgaataat ccaacagtta agatggagac aataggaata cttgatggac cagacaggag
      121 ggaacagaaa ggattttagc acggttttct ttaacagcag gccataacag acccttgcat
      181 ttatttagtg ctgagagaat tactagtttg ataacgacta ggaatgttgt tattaaaaca
      241 gtatgtgcag ttcattttca acagttttga attagagtct gcactaatga aacggatacg
      301 gtttctttca caaagggcag atctgttagt taatatagct gcagcagtgc cttgtggacc
      361 atgcctttag ctctatttgt atttcacagc atgataagca aagagtgttg attttcaagg
      421 atcctgctga tgaaaggtaa tggcattatt acatctttat ctcaaaaaca gaactgcatg
      481 gtaaatgatt attttttctc cccaattgct gttgcacaaa ggatttcttg cttagaatcc
      541 ttatttcttt gaatgatttt agccttggaa atgatatgtt attatttaat gtctgcacag
      601 caagcctgag agcacctaat agcgaatgga ttggaagtga agtgcctcct gctcacagat
      661 atggatcggc tcagtcacac gctgtaccag ctgtcatctc agccatactg
//
LOCUS       KCOD01001231             583 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 137657pyr ultra-conserved element
            locus uce-6850, sequence.
ACCESSION   KCOD01001231
VERSION     KCOD01001231.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 583)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 583)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..583
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="137657pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>583
                     /note="ultra-conserved element locus uce-6850"
BASE COUNT          155 a          124 c           78 g          226 t
ORIGIN      
        1 cagccccttt gtcagccatt ttgcctttgt ctttgtcagc ttggggatgt taattcgatt
       61 ttccattgag aggtgcagat atctatatta ttttcctaaa actccagaga atattataaa
      121 tttcttttta ttgcttccag ccatgttatt taaagtaatt aaccttaatt tataaatttt
      181 tatatcaaac tgccttttaa cttttagaac tggcaggaga agtccatttc ccagggctcc
      241 taatagttct ccatttaatc aaaattcatc catcagattc cagtgttaaa tcatctttta
      301 attgggagtt acattctggt taatagtttt ataattcgcc gcctctaata gtttttacca
      361 cagggatcta ctccattttt tctcactcta ttattcctgg tgttcagcag ggacatttta
      421 aaaacgttca cttcccctgc ctgttctttg tgatctcatt aattcttgat agcaagttcc
      481 ctttctcctc attactggag cataactacc tttatcacta ggtgaaacct tactcatttc
      541 tacaagtgct ctccaaaaca atctgcaatt tatttcagaa aat
//
LOCUS       KCOD01001232             862 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 137767pyr ultra-conserved element
            locus uce-1172, sequence.
ACCESSION   KCOD01001232
VERSION     KCOD01001232.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 862)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 862)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..862
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="137767pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>862
                     /note="ultra-conserved element locus uce-1172"
BASE COUNT          299 a          156 c          162 g          245 t
ORIGIN      
        1 ataatactaa tttttaatag aagggtttag aaaacttctg tggctgcctg taatattccc
       61 attgatacat gttttcctta cagaaaactg actctggaaa tgcagctctc tttaaagcac
      121 tcctaaggat attaacagat taagaaaaga gatttcacag caaaaccccc ataaaaacca
      181 atattaggag tgataccaaa cttaaagaat gttgtaaaat gagcatggaa aaatgtacaa
      241 aatgaattca tgcccattta catgctttca gtcaggctac cagataacaa agcctctgtc
      301 tttgtgttaa cactgcagat taggtcaagt ttttacccct ctgagctctt ttcctgtaaa
      361 tgacgggttt tgatgtgaaa caagcaacat gtcaaagcaa gttgaaagat gtaggcattt
      421 tatgccatgt cacaatgaca ggccggtgaa tatttgggcc attaggggct tattagtgaa
      481 taaatgacca gatggttcag tgatgcacag agatggacag aactggatgc tactaatcag
      541 cactgtctgt acttgatgtc aaatcacatg acacagtaac ccatggatac cgaataaaag
      601 ttaccattag caagtcaatt tgatatctgt gtggtgtaaa cagacttata actgcacttc
      661 agagctgcct gttgttaaga agaaataatg gtagggtatt taaataaaca cactctatct
      721 tatcaagtta tgataaatat aaatagaatt tcaattccca ggacctcctt ttgaagaaac
      781 atttacatat ttgcctctct ccacagacaa aaaggctggg ctggaaatgc tgtaaaagag
      841 aagcaagagg cacattcttc aa
//
LOCUS       KCOD01001233             742 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 137880pyr ultra-conserved element
            locus uce-6367, sequence.
ACCESSION   KCOD01001233
VERSION     KCOD01001233.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 742)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 742)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..742
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="137880pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>742
                     /note="ultra-conserved element locus uce-6367"
BASE COUNT          234 a          135 c          145 g          228 t
ORIGIN      
        1 acagagctgg ggttagaagg gcagaatggg actgcttatt ttattcagct gaaccatgca
       61 aattggcttc caactgaact gttgctttta gctgaacaat tgagtaatct ttgctgtttg
      121 gagataaata ataatacatg ttactgaatt ccactggcaa ataaataatt aatatataaa
      181 caccttgaga agtaaagctc ccttcagtcg ataacaggac agttttgtaa accacttaaa
      241 gctgtgataa aatcctactt gactggtcca caagcagatg tgacaagttg aatttatttc
      301 ctctcttacc aggaagcttt gcaggaaact cttaacatat ggtgcttttc acttccatct
      361 agagctataa atgttattgg aaaaggatgt tcccaggagc agcaagtttc tgacgtttct
      421 gccaaatgga ctccaaatga tccttctgtg gttcagaatt ccccaagttc tttggagctg
      481 gcagccaaga atctctgatc taaacacaac tcactaattt aattatttta ttatagatct
      541 gtggaaagct cttgcagacc agtgactttg catctgtatt ggatctagct agacaggaag
      601 tgcaagttag aagagtataa atattttgtt tcttaactgc tttttgcttg aaaacttgga
      661 aaccatttca cacacaaatc agtcacgcaa gtgaatgcag aggaatggga aataggcata
      721 aaagtgacat cagcttgtat tt
//
LOCUS       KCOD01001234             715 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 137992pyr ultra-conserved element
            locus uce-1794, sequence.
ACCESSION   KCOD01001234
VERSION     KCOD01001234.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 715)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 715)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..715
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="137992pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>715
                     /note="ultra-conserved element locus uce-1794"
BASE COUNT          222 a          135 c          148 g          210 t
ORIGIN      
        1 ataaagcaaa cggatattgg aaagagttgg ccatctgcct ttattttctt ttacttttgt
       61 taaggaaaaa aaaaaaataa accccaccac agcctctgaa aggagaaaga gcacagccat
      121 gaaactgata gtgacaaaaa acaccctttt ttatcaggtc aaaatctcat ctaaatgcat
      181 ttctgatgaa tggtaaaaag cttgctttgt ggatttggag tgggtctcaa gaccagcaat
      241 gaagtctaat gattatttaa tggtgccgca cttgaagcag gattatgtga gactctcttc
      301 cccgttaaga gtttgatgaa taggttttgt gacagccatt taggaataaa caagaattca
      361 tcagtctgca taagaagaag ccagtttata gattaagttt cttgaggtaa ttcatgaggt
      421 cagtcccatt tagatgtaga ctattagggc tcagcttttg agagcggcca tacaagggag
      481 ttactccaaa tggacctctc taatacaaag ccccctttca gagggaagcc tgaaattttt
      541 atgaccctgc tgctaggaag cacatcaact tgtcactgtg aagatctgct ggggcaagac
      601 ctcatcactc tattaaagag ctctgtgacc ctattgattt gaagtattta aagcaggggt
      661 gaagttcaaa gcaatttctt ttctatacta ttactcagcc tctctgtgtc ttggc
//
LOCUS       KCOD01001235             673 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 138103pyr ultra-conserved element
            locus uce-7390, sequence.
ACCESSION   KCOD01001235
VERSION     KCOD01001235.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 673)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 673)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..673
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="138103pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>673
                     /note="ultra-conserved element locus uce-7390"
BASE COUNT          215 a          128 c          118 g          212 t
ORIGIN      
        1 gctcccactc acattcatat ctgtagctga gggaaaacat ctactagaag gccgctgttt
       61 tatagttgcc actcttgagt ccacagttgc attgtctgca attcttgatg gcttggaaac
      121 tggcactatt tcatccacct tatctgtaat ataaaagcat tcagtaaaat aaataccact
      181 tgtccaaaga aatggaacag ttaagtattg caaggtcaaa ggaagagatt tacttttcaa
      241 aaaaatgcaa agaaaaattt ttttggcatt ttaacaaggc aacgcttgag catcataagt
      301 cgtgcaagcc gagcactttt tattgctgct acataacatg catgctttag ttttaagcct
      361 gcatgcattt aatgtttact tagtgtgact cgaaaaacaa tcctcttctt caaaccttca
      421 aaatgtgaag ggagaatatc tatatagaaa tggaaagaag acctttagaa atagtgaatc
      481 cgtacagcac tgtttcaaat agagataagc agactgtact tagtcatcag aatttcagtg
      541 atattttgga cattaacaag tactccagaa gtgctctttt atgcctattc tcctagtaat
      601 cacatcctga tttgtcacac acttggactt gtaggctagc ctgcatcctt tgtttaaatt
      661 aaacttgtat gtg
//
LOCUS       KCOD01001236             723 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 138216pyr ultra-conserved element
            locus uce-4202, sequence.
ACCESSION   KCOD01001236
VERSION     KCOD01001236.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 723)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 723)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..723
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="138216pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>723
                     /note="ultra-conserved element locus uce-4202"
BASE COUNT          194 a          140 c          144 g          245 t
ORIGIN      
        1 tatctgaaaa ccttttaaag cagagattaa attgtttagc tcaatattta atctgttact
       61 tcctctttaa agatgcccag tggaatttgt catacactga gctgataaca cgtaatattg
      121 atcagtcata aacataaaac agagaaatct caggaagtct tctgcaatcc ttttcttttt
      181 aattaaattt tgatctgaac tgcttttgat taattttctt atttgtaagt atgtgaattc
      241 tgggggccag caagtttctt aagttgcctg gcattggtct ctggtgagtg gcttagctcg
      301 ggaacagtat gattgcattt ttatggtttt cagatattta atagcttctt cctgtcattt
      361 tctgaatgag tgaataaggt ttagccctct gggagccagc gcagcatcag agagtggaga
      421 aaatgactcg aatctgtgta cttgactgat tgccttagtc ttaattgttc tcttaattag
      481 ctgcagtagc aactgcatct ggggagagat cacggtattg gtaaacagct ccaccttgga
      541 gccctgtgta atgccttttg gaaacacgac aatgagctct gcatctccac tacacaaacc
      601 tgccaaatct tctgcccctg aagtcttgtg tgatctgtca ctcttgtctg tgagatgcag
      661 gcccccaact gtttgttctt aaacaaatta agctttaata tgccaaaagc cagctttatt
      721 gag
//
LOCUS       KCOD01001237             661 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 138322pyr ultra-conserved element
            locus uce-3161, sequence.
ACCESSION   KCOD01001237
VERSION     KCOD01001237.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 661)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 661)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..661
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="138322pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>661
                     /note="ultra-conserved element locus uce-3161"
BASE COUNT          228 a          101 c          112 g          220 t
ORIGIN      
        1 tatttcataa attaaacatt atctggataa atacatgtca gtacagaagc atttgtgtct
       61 catatctttt ccttgattta aatgggttca ttcaatatca gctaggtagt gaactttgaa
      121 gcagagtcca ctgtaataat agtaaagttt aatgatgcat agctttgtga gactgacaaa
      181 ttcccagcca aagtattgat tcctggagaa tttatgaagc acaggctcta ttatatgtca
      241 ttacggtcca tttttggctg aaagaatcat gtaaaataga tttttaaatg agtggtaata
      301 gccagacata aagaaggtat tgatgtgtgt catgaagggt gaaatagcat gccaggtaaa
      361 ggcatataac aaattgcaaa caacagtgct gaaactcctg caaatgtaaa tttgttttta
      421 gttttaatca aacctttgtt tcagtaaata caaattttgc catggaactg caccctttta
      481 aaaaacatta ttatttacag tttgatttca tgcttcacat tggaatgtgt ctataaaatg
      541 catatctcgc ttacagacct gttaatcaat atgaattgtg tactacatta caacacaact
      601 acatctgaga ttattaggga aaaaatcaaa tgcacatatt tctgcttact tgagcaatat
      661 g
//
LOCUS       KCOD01001238             606 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 138431pyr ultra-conserved element
            locus uce-823, sequence.
ACCESSION   KCOD01001238
VERSION     KCOD01001238.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 606)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 606)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..606
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="138431pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>606
                     /note="ultra-conserved element locus uce-823"
BASE COUNT          176 a          113 c          122 g          195 t
ORIGIN      
        1 ttacatgcct gattattttc atcctttgga attaagatga ttcctagtgt tggctatgtg
       61 agagccagct tagttctata ttttaaggaa gggtgttaaa ttccctaaaa taatgttatt
      121 ctaagggaga ggaagatgga agaaggtggc tgttcaatga tttaaacaag tgccctgtgc
      181 tcattttgga aaaagacagg ggctccctgc acccatttct gctccaattt aatgaagttg
      241 ttaaagtagc aagactgaca ggttaattat cctttataaa agggggacaa attgaactgt
      301 gtctttccat cattttttga tatatcaaga agctcctgag gtgctcagat gccactctgg
      361 tgaatagaac aactaatcca ctctgctatt ctttgctgac cctggtcccc ccatcggggc
      421 cttgcagtat attgcagttg ctttttgttt cacattcaac agattccact ttattataaa
      481 ttcagaagga tttttttcct ccatatgttg gctgacagct cccctgaaat aactgatggc
      541 taaatttaaa ctctgatgaa aattaaccca agtgttaaat gcaaacagga gctgcttgga
      601 aagaaa
//
LOCUS       KCOD01001239             574 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 138541pyr ultra-conserved element
            locus uce-5140, sequence.
ACCESSION   KCOD01001239
VERSION     KCOD01001239.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 574)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 574)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..574
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="138541pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>574
                     /note="ultra-conserved element locus uce-5140"
BASE COUNT          171 a           96 c          133 g          174 t
ORIGIN      
        1 gtgtctgtgt ttccaggtgg gtgatactgg ccccacgact gtgtccatac atccctctgc
       61 ctgcaatgca attttgcagc agcaggatta gagttatggg agcaaggata ttgttggagt
      121 aacttggcaa cactctaggt gttctgacac tggttctttg ctcaagggca agggggattc
      181 tggatacaaa ccagtgagag aaataatgtc agaaaggttc agaagatgaa agcaatgaca
      241 gtaaataagt ctgaaattat tttaggttta catactttaa gtcctcagtg actgaaaaca
      301 cagccaagaa ttgcttcagc aatattcctt cataaatctg cataataatc tctcagaggg
      361 gctttggtga aattacaagt attcatttac taaattgggt tcagtgtctg tatcatacgc
      421 tgtatgaata ttcagtgcca tgaattcatc caaagtatat tgaagttagt gtggtctctc
      481 tgaaatagac agtaggtatg ggcaaaaagg gctttccttg aaatattcta ttagaggcta
      541 tgttcctagg agtggaaatg tgaaatttct gatc
//
LOCUS       KCOD01001240             525 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 138653pyr ultra-conserved element
            locus uce-5051, sequence.
ACCESSION   KCOD01001240
VERSION     KCOD01001240.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 525)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 525)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..525
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="138653pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>525
                     /note="ultra-conserved element locus uce-5051"
BASE COUNT          157 a           88 c           87 g          193 t
ORIGIN      
        1 aaccagttct ctgtcattct caagttaaga agattggagc ataattaatt ttttttaata
       61 gttcttggct atgttgcacc agcacccaaa gttagatcac tgaaaatgtg gctaggtgtt
      121 tctctaaagg attagctcta aatgtgtccc atgcatgcca cactttctgt tctttaaaat
      181 tttccattaa gatgaaaatg taataccttt ttgcctggag gaactaggtt ttgatttgct
      241 ttgacaaggt gggaaagtgc tttctttatg ttcttttctt tcatgctttg cagcacagca
      301 gatggaagaa aagtctctaa tccccattct tttctgcaat aaaagtattt aatttcacat
      361 tcctgtgatg attatttatc taaagactgg tgactacgat gccaagtgaa tgattacctg
      421 aaaacagaag gagagttgat caagtccaga gttttgaaaa attttttaaa tttaaacaat
      481 ttatttcttt taaaatgata aataatcttt cttctatccc ttcca
//
LOCUS       KCOD01001241             561 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 138760pyr ultra-conserved element
            locus uce-2541, sequence.
ACCESSION   KCOD01001241
VERSION     KCOD01001241.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 561)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 561)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="138760pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>561
                     /note="ultra-conserved element locus uce-2541"
BASE COUNT          107 a          134 c          157 g          163 t
ORIGIN      
        1 gatgaccagc agcctccaga gaatgtgagt gtctctccca aatcatttgc cacctccctc
       61 ttctttggtt ttctggacaa tctgactgga gctgggaagt ggttgtgctg gggtaagagc
      121 tgcgtggtgt aggtgctgta tgaagtgtgc tgcgggaagg tgcaatggtg ccctgagtgt
      181 gcgcagactt gctgggctgg acgaggcttt tcctctctgt ccttctctga gctgtttctc
      241 tttccccttt tctttcgcct cctgtagatt cagaacattc tgaaggtgct ggtgtcagac
      301 cttaaccgct ccaatggggt agccataccc tcattggaca agaggaaggt gaggcagtgc
      361 ttgtgtccct cgcactcgct ctccctcccg catgcttcgg gtcctgttca cactgagctc
      421 tctgggatgg agcctttttg tcagttgctt cagtttacca ttgctcacct tctggtttgt
      481 gtcaaaaaag tgagccttga gacagctgag cttggaggaa aacaggaatt tggggtgagg
      541 caatataaca gctgaggaaa a
//
LOCUS       KCOD01001242             643 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 138870pyr ultra-conserved element
            locus uce-1751, sequence.
ACCESSION   KCOD01001242
VERSION     KCOD01001242.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 643)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 643)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="138870pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>643
                     /note="ultra-conserved element locus uce-1751"
BASE COUNT          222 a          106 c          105 g          210 t
ORIGIN      
        1 ctttgtgcta gtttgacaag aactaatgtg gatacttaaa tattttaaag gctgcacatt
       61 tcagaatgat aaaatactca actgatcttc ctttcctgtt gaatttgtgg ctaatgataa
      121 aataatttaa tctataagag atttttaaca acaaacacta aaagttcttt tgagatcttc
      181 atatagggcc atgcaatgac actttttaac tacagttgtt ttttattcag ccataaaatc
      241 tatctttcat atagaaaccc acttacatgt cttacttcag tgaaggttat ttgtagactg
      301 aaggtctttt cttgtcaaga tatgatgaat accatgtgtg aagacagaag agcatcagga
      361 cctgtattag ccggaaaacc cactgatctg tgaataacct aaaaaagaaa acctgaagat
      421 tagcaacgtc gcttttaaga atgatccatc aaattcaaca agcagattca cagagatgaa
      481 tcatctagtt ccttttattc caacaataca gtaaaggtta tttcccttcc ttacaaatag
      541 aagttctgaa atacaagaaa tagagacttg tgagtacttt ttcagtcata aggcaatgaa
      601 tctattcagt gtggttttta aagataattg aatcaggtgt ggc
//
LOCUS       KCOD01001243             713 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 138981pyr ultra-conserved element
            locus uce-2521, sequence.
ACCESSION   KCOD01001243
VERSION     KCOD01001243.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 713)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 713)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..713
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="138981pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>713
                     /note="ultra-conserved element locus uce-2521"
BASE COUNT          238 a          121 c          104 g          250 t
ORIGIN      
        1 acagatgaaa taaataatat taaaggcatt tgctttattt tatattgatt tctgactgta
       61 tcaatgtcct ctctattgtc acacttgtct atctggttcc atataaactg actatattgt
      121 atgaaagtta atataaaatc ttctcttgga tgataacaaa cacagtaatt tgcatttaaa
      181 tgacaatgca agcagtcatg aatacaacaa aacaacatta tttgcattta aatatagatt
      241 tataaatgac aggtatgctc tattgttcag taggaatttg ttattcttta catgttgttc
      301 ttttttcagt aatgtatttt tatggtaatt tttgtaacaa agtcattaaa ttgtgcaatt
      361 cttaccagat acagccagta gagtgttagc atcaactgga atggcccatt gtgctattcc
      421 tagaacaaac agttctctcc aagcatcttc caaaagcatc agctgtcata caatagatgt
      481 acaatataac atagtgtata atttatagat ttataaacaa tttaaatatg taaatttctg
      541 ttattttaaa aactacttta aatgcctgtc atggtatttc ccccacagca tcttctctta
      601 gccttttgag aaggtgtcta gaaataagtc tatgcattgc agactgtgca cctgtggacc
      661 aaaagagagt gagaactctt tccccagagc atttgctcac aacatgaaca cac
//
LOCUS       KCOD01001244             400 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 139084pyr ultra-conserved element
            locus uce-1798, sequence.
ACCESSION   KCOD01001244
VERSION     KCOD01001244.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 400)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 400)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..400
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="139084pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>400
                     /note="ultra-conserved element locus uce-1798"
BASE COUNT          139 a           68 c           97 g           96 t
ORIGIN      
        1 aaaatgcaat gaatcggaat gcctcacaga tcatagcgga atcagacttt ccagcaagga
       61 aaatcttttc atggtgaatt aagtggtgga ggaagaaaaa tggtgatgaa aaaaggtagg
      121 cacagatcac aaacactggg ctcagggctc gccgctgaag atttaagaac cttagctaaa
      181 gctatgcaga atagaatgtg gaaaattgaa tttactaaac aattaagcat tgaattaatc
      241 tacatcccgc acagtagaaa agtgggggag ggaaccgaac agagctgaat aaatcagggg
      301 agctcattaa aagatagtga atatatcagg tctgttgttg cataaaggag ggccgtttcc
      361 tggtataatt cttcagtccg gagcctcttc ttttctgcac
//
LOCUS       KCOD01001245             367 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 139188pyr ultra-conserved element
            locus uce-2439, sequence.
ACCESSION   KCOD01001245
VERSION     KCOD01001245.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 367)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 367)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..367
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="139188pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>367
                     /note="ultra-conserved element locus uce-2439"
BASE COUNT          125 a           79 c           58 g          105 t
ORIGIN      
        1 cccacggagc ttctgttcca ccagagatcc agcaatgaaa ttgtactgca aatggaggaa
       61 ttatgtcccc tctagttcaa ggcttaaagc ttcaatcaca ctataaaagc accaagtgat
      121 cacaaaacac caaaaaatac tgagttttga agcaataaaa ctttagagtg cagttgccct
      181 cccttaaatt tattcatgaa cctacattaa aatgtatggt tctttttaca cagcatttat
      241 agcttaattc aaatgaatgt ttctggctaa gcacgagtgc ctctacacac tcaagtataa
      301 atcaaaactt caaatccatt aacagatggt ttctcaatag gctgtctgac ttggctacag
      361 tagtgaa
//
LOCUS       KCOD01001246             377 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 139298pyr ultra-conserved element
            locus uce-4733, sequence.
ACCESSION   KCOD01001246
VERSION     KCOD01001246.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 377)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 377)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..377
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="139298pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>377
                     /note="ultra-conserved element locus uce-4733"
BASE COUNT          109 a           79 c           58 g          131 t
ORIGIN      
        1 gtcaagcact acaaattctc tatgcttgcc catcaaccac aagtactgtt ttagtaagct
       61 gccttttagt gaaatgtgac tgctactgcg cacaatttta aaaatggctt gacagaattg
      121 ctaatgttct cattccttca ggatatttcc taatacttgt agccttttca tgtttctaat
      181 taggccagta atggtccctg aagttaaacc aattaaaatt atttactgtg acacatagtg
      241 tggagataat tatctgatat ctgaatccaa cttctgctta cttcgcatca ttacttaata
      301 gaaaacaggg aacctgttgc ccatgctttc attttacttg tctaccaaat gtgtttgccc
      361 tatagcaaac tgttcaa
//
LOCUS       KCOD01001247             637 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 139406pyr ultra-conserved element
            locus uce-7657, sequence.
ACCESSION   KCOD01001247
VERSION     KCOD01001247.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 637)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 637)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..637
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="139406pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>637
                     /note="ultra-conserved element locus uce-7657"
BASE COUNT          184 a          144 c          128 g          181 t
ORIGIN      
        1 aattacagtc tttaatgaga ctcagagcct ctcaagttca taatttttca tttgtctgta
       61 tgcttttctg ggatgaggca cctgcctcta caggagttat gcttccttcc cttcctcccc
      121 cccttacaca taccactgca aatctgaagg gatatttcaa tcaccacttt gataaaggag
      181 atcattttgg catataggtg atctcctaac agattaagga tatttacttt cttcctgatg
      241 gatcattccc agagatcagc acaacacaac ctacgcaatt agttttcaca ggtggctgtt
      301 ttgcctccag taaaactgct ttctttctcc tcctgcaagt catagcagag caaatgtata
      361 taaaaacatt tcagatatga aataaacact ttcataaaag cagctgtgat gcaatgcatc
      421 atttctgtct gacctgagct atggaatgaa cttttgttgc cagaatcaaa gatggtaagg
      481 agagagtgga ggacaggggc caggggggga agatcagggc tcagaatagc acagtgtaaa
      541 atgacctcaa acactcaaag ggtaaatgcc tgtttggtgc aagcacacac tctctgtgta
      601 ctctgctgca caacctgtgc aaacaggctc atgctgc
//
LOCUS       KCOD01001248             735 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 139517pyr ultra-conserved element
            locus uce-166, sequence.
ACCESSION   KCOD01001248
VERSION     KCOD01001248.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 735)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 735)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..735
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="139517pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>735
                     /note="ultra-conserved element locus uce-166"
BASE COUNT          232 a          111 c          145 g          247 t
ORIGIN      
        1 aaatagaaac atgggtttag ctacctgtct tgcagtagtg tgtggtgtct tttgtttctg
       61 gtttctagtt atgttagtac cctattgaca tagaaggtaa ctagattgtt ctattagtga
      121 tttctgacaa acagaaatta tttgatatac taaagctatt tctggcagaa gatagaaagt
      181 tttgacaaac atgcatggca cagcaagtgt ccaattctaa agagcaaaat aaatgcaaac
      241 caccattatg gggaacacaa acagcctgaa agcaagttat cagtaagcaa ataattgttg
      301 aactgttatg aatggaatag gatgttgaaa tagggcatga ttggctgatg ttacatatgt
      361 ccttgattac cttccttgtg cttttatctt aataagtgac attctttgta ttcccttgga
      421 tggctagaca gtctgacact gaagaagaat aaatattgca tgtggtacac attaagctgt
      481 catctaggac agcatttata aaaagtaact agaaaaattc ataagaaatt ctgcagtgct
      541 acagtttcct ggctccagtc ataattgtca aagttcttga cacattcagg tcttctgaag
      601 tgatttgggt ttacagctac ttggtgtatg aataattatt aaggattcat tttttctgat
      661 aatgcagact gttaatgttc tcacaatgat gcattttcat tgaagaccat ggagtgatat
      721 atagctagtt ctctt
//
LOCUS       KCOD01001249             527 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 139624pyr ultra-conserved element
            locus uce-4564, sequence.
ACCESSION   KCOD01001249
VERSION     KCOD01001249.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 527)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 527)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..527
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="139624pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>527
                     /note="ultra-conserved element locus uce-4564"
BASE COUNT          176 a           73 c           93 g          185 t
ORIGIN      
        1 taattagggc ggtaatatgt ttgaccatta tttttttagt atgacttttt tctgttacta
       61 ttataacaga aatgatcctt tcaaagacaa ctaaagtgct aatgatagct aagaaggtca
      121 ttcctaggag gttaaactgg tttaattaga atttatgaga aggttactat aggagtgcag
      181 aaagatgtta aggggttaac ctataagaga ttacattgta gtcagtgttc tgttaaagtt
      241 tgaattaatt tttcccatgg gtttttcaca ttctaatttt caactaaatg agacatctgt
      301 ttcagaaaag gaaaatttgc tatggttgtc atagcaacta tcattctgta agaaaattat
      361 tccaatggtt actttagaac agaaagatag aaattcagta cataaagcaa catccgattg
      421 ctagcactga taattcagcc ctttttgtat ggcagattat ttgacctgca aaacttgtgc
      481 atatgtttca agcataagct gtaaacaaat tcacctctga tatattt
//
LOCUS       KCOD01001250             753 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 139732pyr ultra-conserved element
            locus uce-370, sequence.
ACCESSION   KCOD01001250
VERSION     KCOD01001250.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 753)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 753)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="139732pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>753
                     /note="ultra-conserved element locus uce-370"
BASE COUNT          253 a          151 c          146 g          203 t
ORIGIN      
        1 atggcctcaa gcaaggctaa agttaggaaa caaggatcag gctctcatgg cagaactagg
       61 gattactctt ggttcattta aacttaatta acctgcaatt atgattaact caggggaaag
      121 tctttccaaa ttaaatacaa aaaatatatt atttcctaag tctgtccaaa gttcttatta
      181 tgtcaatatt aatattcata aagaagcact aagtggcctg aaacatctct aaccttgaca
      241 gtttttttca ggggtaataa taatctgcag caaatgcagg ccaaccaaaa accacttaac
      301 taattagtag ttgcagtcac cgagaaaaca tgaatcaaca ctgttattac aagtggcaca
      361 tttgagtggc atctaattat gacttgatga gcacgatact tgcattatca acattactac
      421 tgcatcccat cagggactaa aagccgctga tggcattgac tgcgagaaac tccccctcaa
      481 tggtactgca gcacccaaca atctccttgg caggggcacc ctcactaaat gacatgttaa
      541 gcgtaattac tggtagacat tgtaaataaa caggattgga agtgaaaatt gtaccaagtg
      601 cataagacac aatctgacac attggaagtg gcagccttaa ttgagagttt ctttgactgc
      661 tcaagatcat ttcaactgca tttctcggag gacagtgatt ataactgtgg agacagacgg
      721 cataatggta tcagcactgc tgacagagca gtg
//
LOCUS       KCOD01001251             449 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 139842pyr ultra-conserved element
            locus uce-4119, sequence.
ACCESSION   KCOD01001251
VERSION     KCOD01001251.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 449)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 449)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..449
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="139842pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>449
                     /note="ultra-conserved element locus uce-4119"
BASE COUNT          124 a           78 c          112 g          135 t
ORIGIN      
        1 ctggtgagtt ctcgactcga aggagggaga gaggattgtt ctcctgtttt taacctgtgg
       61 accttaagta gttttagaaa acaaaagtgt cagagtcact gaagcagaat gccctgctcc
      121 tggaaatgga gtgatttaca tttagcatct gttttgggct gagagtggga attggctttg
      181 taatttcttc tgtcatgcca ctgtcagaaa attaagctgt ttacgccaga ctatagaagg
      241 ttaatggctg ttctagcaaa ggtcaagtgg tcattttaaa ggaaggctat gctgaataat
      301 cgaaaatggc agaaggataa ggcataaaat cttagctgac tgctcatcct accctgtgtt
      361 tgctctgctc ggaatgtgag ttgcttctga agataccttc aattccatga gcttcatggc
      421 aagggagcat ttttggaaca aaattcagc
//
LOCUS       KCOD01001252             752 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 139951pyr ultra-conserved element
            locus uce-5679, sequence.
ACCESSION   KCOD01001252
VERSION     KCOD01001252.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 752)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 752)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..752
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="139951pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>752
                     /note="ultra-conserved element locus uce-5679"
BASE COUNT          261 a          156 c          124 g          211 t
ORIGIN      
        1 cctgccatca acactgtcat catttggtgg catctgtctc tgcatttaca tctgccttac
       61 aaagcagcca ttccactgtt ctgtgctatg gctgactgca aagtctccta cacagtagga
      121 aatattaagc acatacctca aagacttgaa ttgcattgaa agtaacaagg cgaatattat
      181 gtagtgttta ttgcatttta aactctttaa agatatctaa ttctgggcag cactgcatcc
      241 ctacacacag ttgaaagaaa attccattct gttaacatca gatttttttc actagcttca
      301 aaatcaaaaa cacaacagta agcttaaaga ttacaggcaa cagcattcaa acatggatgt
      361 gggtagagaa aggagtacct ggcatgagta cctgcttagt ttgactgaat ccttgatttt
      421 taatttggct tttcatgggc cgctcacaac accaacgctg tgtgaggtat ggtagtcagc
      481 tgcaataatt cataaaccct acacttccat caatccaatg ctactggctc tcgagttaca
      541 gaacaaactg cattagaatg caaggcaata aagcactaga aacatccttg acaaagaaat
      601 actagcagtt tatatgaaag tagtccaaca tgtgcctcaa atattaagca aaagtttctg
      661 ctgatgtacc aacacaatat ggacttaaat acaaaaacag ttcaacaaca aaatccctaa
      721 aaataaaaaa aggataatta atttttctat gg
//
LOCUS       KCOD01001253             574 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 140062pyr ultra-conserved element
            locus uce-4616, sequence.
ACCESSION   KCOD01001253
VERSION     KCOD01001253.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 574)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 574)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..574
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="140062pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>574
                     /note="ultra-conserved element locus uce-4616"
BASE COUNT          193 a          102 c          108 g          171 t
ORIGIN      
        1 atccttcatt tccaaggact tccgtgtctt atctttccag aagattgcta cagctagctc
       61 aattattact ttcctgggat gtcttgtttg cttccaccag acggaagtaa tataaaatta
      121 tgtaaatcag ctttcttgaa gtaaagaatc atggaccagt caataatgtt tatgcattaa
      181 gaaagggcag ctcctcctgg aagaaataac acagggagcc gatcataagt aaacatttct
      241 aaacagacaa agggctggtc cctgcagcac aatatattat catatttcca cataattagt
      301 ttgttttcca cttgaaatca gaaaacgatt cgacattgca ttctgtgcct caggatggtg
      361 catacagtac aattctcatg tgcaggttca tatgttgaat aattagtaag aattaatctg
      421 ttgaaattaa agtttggaat attatagaac tcatgaatag tgcatggaac aatcaagtaa
      481 attaaaccag aaacagaatt taggaagcca gacaatagca gatgactgct ggcaatctgt
      541 tttttaatca gtgcgttaca agccagaggg atga
//
LOCUS       KCOD01001254             474 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 140172pyr ultra-conserved element
            locus uce-6824, sequence.
ACCESSION   KCOD01001254
VERSION     KCOD01001254.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 474)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 474)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..474
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="140172pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>474
                     /note="ultra-conserved element locus uce-6824"
BASE COUNT          157 a           82 c          104 g          131 t
ORIGIN      
        1 tgttagacgt taaggctgat ctgtgccact acagcagtgc agaggaaaaa tgtaggagcc
       61 tcaggacctg aaaagtacac agaggcattt attaaaaaac agattgaaga attcaaccta
      121 ggaaagagac atttagccaa catgatggga gaagatccag aaacttttac ccaagaggat
      181 attgatgtaa gtacagttgc tctgttggag aagtaattta ctgtagagtt tcagatattg
      241 aaagcacttt acttcagcat gagcccctca gctctctgtg aattttaatc aaactgtcag
      301 aataaggaag aatgctgtta tgcattgcaa acattgcaac tgtgactgtg aatagagatt
      361 ctacctctgc taccgtgtga ggtcagacat cacagtatag agctgtatac tatatctaag
      421 gcacagtagg ttctttttaa aagtactaat ggataatccc cttgatctga ggtt
//
LOCUS       KCOD01001255             611 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 140281pyr ultra-conserved element
            locus uce-939, sequence.
ACCESSION   KCOD01001255
VERSION     KCOD01001255.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 611)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 611)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..611
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="140281pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>611
                     /note="ultra-conserved element locus uce-939"
BASE COUNT          187 a          140 c          131 g          153 t
ORIGIN      
        1 aagtctgaag agatttatgc taattaagtg gtttgcttgc agcatttcat ggaaaggcaa
       61 tgacaaaaca gtactatttt cctcgcctgc ttccacaaaa tatgttttat attctaagca
      121 gcactcacct agcagcttcc aggagttcgt ccttcttgta ttcacctaaa tgattgcaaa
      181 atatcatgct gttagcattt ggcagaagac agattaagaa atgcagtagg aagcaaatac
      241 agaattaaaa cagagaagag gagagcccac accccgctgg gtgatggagc tgtgacgtta
      301 gccagcttgt ggaggcagca tcaccagtac cttggagacg ggcagcaaat tgacgcatct
      361 tcttgtccaa tcctcagatg gaaaggcttt cttcggacaa ccaatgactg cgaaatcttg
      421 tgtccagaaa cacagtcccg ctgatagcag catgtcagct gaagacaatg tccccacccc
      481 ctgccctatt cagtatgtca cattatactt gggaagcata ataaattcca agacaaagca
      541 aggcagtgcg gcttttgaaa aggtacaaat taccgatctc caaggctctc acctgcctat
      601 ctgaatggta a
//
LOCUS       KCOD01001256             653 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 140392pyr ultra-conserved element
            locus uce-41, sequence.
ACCESSION   KCOD01001256
VERSION     KCOD01001256.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 653)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 653)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="140392pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>653
                     /note="ultra-conserved element locus uce-41"
BASE COUNT          220 a          127 c          105 g          201 t
ORIGIN      
        1 tctggcctat aaaattgctt tcaagtatgg caatcgttag gcttcctaat ataagtgtaa
       61 atgatttaca ttacactaat gtgcactacc tctgctcctg tagcctgtct ccaccttgtt
      121 cacatttctc aaatgaaagt gcaagcccat gttaattgtt aactatcaag ggtttcactc
      181 tattaattaa aatatgtttt aataaaagga aacatagcac attttggtaa cagccttcta
      241 aggctgaaaa gtatttacat tgttgcattt tagggctgct gtgaaagccg attttgtgct
      301 attcagggac cacaataata acgctttaaa attcctcact gggatgcaat gtagtccttt
      361 tgatggaaag actgtctttc tcattcggca gaaataaatc cattcatttg atcatgtagt
      421 cattgagggc aatacaaaac aaaccaagtg tgagaaattc tatgtgatga agtaaacaaa
      481 acaaaacccc cccaaaaagg ggaaaaaaac atttccatga caaaaagatt ctttgtcctt
      541 aatctaccca ccatatgcaa gcgtttcttt ttagcatatc tcttgttcta atctcgggtg
      601 acatggctac atagataaga ttcacaaaac aaaacaaaaa cctagtttaa caa
//
LOCUS       KCOD01001257             538 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 140501pyr ultra-conserved element
            locus uce-1205, sequence.
ACCESSION   KCOD01001257
VERSION     KCOD01001257.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 538)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 538)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..538
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="140501pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>538
                     /note="ultra-conserved element locus uce-1205"
BASE COUNT          133 a           98 c           98 g          209 t
ORIGIN      
        1 atttaaacta ttactgttga gaaataagag ttgtctggtt tagtaccatg cttacatttt
       61 tggtctctcc agttatttgc tgttgacttt tcagtgttcg tctcttaaac ccgacagcta
      121 aactgtgctc cgtgtggtgc acttttcctt ctccttttgc tgcttgtgtt ccctcagttg
      181 ttgactgtga ctggaaaata ggcgtacaaa gcattttgca ttctctgaat gtaccacaca
      241 gtaattctgc tgtctgaaaa ctctgtaatg tcaataattg atgcacttga gaagtggtaa
      301 ttaaattagt taattatgct ggtaaaatta catgcaatta tgtgactgca gggtatgttt
      361 agtaaattag gctttcccat actcactaca tattgtggtg ccaattttgt tccttgatga
      421 ttaggtagct tttgatactt cttaattgat ttaatacctg gatcttcatt agccctcgat
      481 tgctatgcaa ggtatgtctg acatttttct ctctgatatt tcacagaata tcattcat
//
LOCUS       KCOD01001258             623 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 140613pyr ultra-conserved element
            locus uce-345, sequence.
ACCESSION   KCOD01001258
VERSION     KCOD01001258.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 623)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 623)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="140613pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>623
                     /note="ultra-conserved element locus uce-345"
BASE COUNT          221 a          109 c          116 g          177 t
ORIGIN      
        1 gcattgcgtc ctttccattt cgccagcgag taggagagct gggttaggag gcagaaggaa
       61 aacatcatgg caggaatatt ggtgtatttt ggatgcaaag cagaagctta tctgttttac
      121 tactgcagca ccagagaaaa tcaattttga cacagaactg ccactttaca agaaaataac
      181 tatactttcc aataacctaa tctgtgcaaa gcctactgaa aattccctaa agaaccagta
      241 gttaaaacct ccattaaatc aaagggttta atatgggaag ggaagagagg atgcagtttg
      301 acttgggaat gtaatggact cagtggggaa ataaatacgt tgttttatgt gtacagttac
      361 agaatttgag aacacagcat tcatttcaaa gggaattctc ttgctgtgca acttattcct
      421 aaacagatgt gatttttgct tattcaaaaa catttacgta acaattacag cataataaat
      481 tataattgcc atcatcttcc agctatgcta tgaattctat gcaaacacaa agaaaatgca
      541 attatataga actgtaaatc ctactttcag gtagcttaga gcactgacag aacacttgac
      601 ttataatgaa caatacctta aaa
//
LOCUS       KCOD01001259             416 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 140718pyr ultra-conserved element
            locus uce-142, sequence.
ACCESSION   KCOD01001259
VERSION     KCOD01001259.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 416)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 416)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..416
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="140718pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>416
                     /note="ultra-conserved element locus uce-142"
BASE COUNT          118 a           80 c           94 g          124 t
ORIGIN      
        1 ccgcaaacga caaagaacga catgatgcaa tcttcaggaa agtaagaggg taagttcttt
       61 ccttactcct ttctgtgtac ctaagaaatg ggctggaatg tgggtcttga ggaggtgtgt
      121 ccggtaattc ctgtaagtag attattctga agatctaaaa ttacacataa gttgagtcgt
      181 agcgtgctta tctgtatatt cctctttagc atactaaata agcttactcc tgagaagttt
      241 gacaagctat gccttgagct cctcaatgtg ggtgtagaat ctaagctcat cctaaaaggg
      301 gtcatactgc tggtaagctt gctgcattgt tttgatggga tacagaaatt ttggattatc
      361 cccacccctg caaaaaggat ctccaggttt aatgcaaatc tccacagact ggggat
//
LOCUS       KCOD01001260             823 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 140821pyr ultra-conserved element
            locus uce-24, sequence.
ACCESSION   KCOD01001260
VERSION     KCOD01001260.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 823)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 823)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..823
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="140821pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>823
                     /note="ultra-conserved element locus uce-24"
BASE COUNT          279 a          147 c          148 g          249 t
ORIGIN      
        1 tttgtgcatg tatgtgcata gattgtataa ttaaattttc cattgactat gacaaccata
       61 gaagaataat gatagaaaat taatcaacat atcctgaagt ttatttttcc tctgaaaaac
      121 atattagaaa ggtcactgtg atctgagaaa agagctagga agtccctgat agcacctggt
      181 tatatataaa taattttcat ccccctttac ccctgaagca acagaagacc tgctttttta
      241 tcttgttaat agaaaccgca atctctcatt aatatgcagg gctagtgtgc tgcttctcaa
      301 gaggaaaacc tgcagcaagg ctttgccatt aatcaacttc agcccagcag ttcagtgaga
      361 catgatgata catgttttta actctaaatt aatgaatatc tttaccaact gtcaataaat
      421 gaagaaaaac actggtgagg aacacaagtt gaggtgggaa atttccaaac acaacagagt
      481 gatggggaag tgggcaacta acaagaataa taatgctgtc acacacaaac aaggcttaac
      541 atgatccagg ccctactcaa ggaaagggtt gtgctgcaat gataaatctg ccaaaaccta
      601 attatttttg acacattaga tgcatcaggg aatcactgtg attccttatc aagtagtttt
      661 tgcattagaa agtgactgaa cctgccagcc atctcttggg ctatagtctt caatgaaaga
      721 agtaactttg aattttaaaa ggtacagatt gctttaatat tcactgcaaa ataacttatt
      781 attcaaacct tattggggag actctcagtt ttgttttgtt ttt
//
LOCUS       KCOD01001261             716 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 140929pyr ultra-conserved element
            locus uce-1512, sequence.
ACCESSION   KCOD01001261
VERSION     KCOD01001261.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 716)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="140929pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>716
                     /note="ultra-conserved element locus uce-1512"
BASE COUNT          243 a          128 c          141 g          204 t
ORIGIN      
        1 tatgaacaga tcataacaat ccagtcaata attaggagat tacaagtttc tgtgttttag
       61 tgcatctatt tcaatgttac cagacctaga gctgcatgaa ggagagggac attcagtggt
      121 gtgtccgtga aggggaaaca gtgaaaaata ataacctatt agcagtccat aaagttcaat
      181 ataaaatatg tttgtactaa agtgttaaac aagtagaaca aatagcgtgc tagtagcata
      241 caaaattaaa acgagtcaca aatggatatt ttctatggca atttatttca caattactct
      301 tgtggaagct ttcatgaatt aaatatgagt tctatcttga aattaggtgt tataaggcta
      361 aattacaaga ggcagccagt aattgaggtg gctgaaacac ggggtctagt gaactaatct
      421 cttgctgtgc cacgtggctg tcccctcgcc aatgggaaac ctccccatga caaaaacaga
      481 ggcagctgag aaaaattgat ttctcatctg agccatattt gatagctttt gaaatcgaaa
      541 attgaaatta actaacctaa gccccattgt aacaaaagag caaattaaat atgcaacatg
      601 gcttcctatt ggcagcaaga gggcctgcca aggtaaattt gtaaatagag tttaagatgc
      661 agtcctcccc cctccttttt ttcctttctc tcagtgcgaa aagtataagt ctgcaa
//
LOCUS       KCOD01001262             645 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 141039pyr ultra-conserved element
            locus uce-6479, sequence.
ACCESSION   KCOD01001262
VERSION     KCOD01001262.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 645)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 645)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..645
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="141039pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>645
                     /note="ultra-conserved element locus uce-6479"
BASE COUNT          176 a          123 c          143 g          203 t
ORIGIN      
        1 atggtcagtg cagtcagtgg cctgaggcag acagtctgca agcacagctg ggcactgccc
       61 ttgtcacaag gcaaagttgc ctgccttcac tgaattcaga ggtctgcagg gcatgcaatc
      121 cctaatgctt cacaataaat ctatggtgat ccaaggtaaa gccctctttt gctgttgttg
      181 tgacattctc ctttgcaacc tgtccacacc tgcaaattct gcaaagcatt gttcgggggt
      241 taattaaagc agtctgtttc tacagcacgt tctgtctgtt tcttcttttc attattagat
      301 gtgatgacac atttgcctgt gtggcttccc gcagatggca cggaaatttt gtgatcaaat
      361 gttaagagta aaccaactgt cagatccgat cacagcttcc tgtattgctc tgctggtgta
      421 ggaataccgt tttaataaag ggctccttta agtgataggg tttgcagcaa ggataaagtc
      481 tgagagtaag atgtctagtt caatatgaac agtttcagga ctgtattgag aagttttatg
      541 ctctatttat ttgcaaacac ttttaatatg aagtgaacat tattagagat tgtggtttaa
      601 ttcacaggca attaaactga ataaaataca aaataatgtg tgtgg
//
LOCUS       KCOD01001263             295 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 141146pyr ultra-conserved element
            locus uce-4050, sequence.
ACCESSION   KCOD01001263
VERSION     KCOD01001263.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 295)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 295)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..295
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="141146pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>295
                     /note="ultra-conserved element locus uce-4050"
BASE COUNT          106 a           56 c           45 g           88 t
ORIGIN      
        1 tttttataaa tctaaatcta cacacagagg tcactggttg gctgaactta aaccgtttta
       61 cttagtaaat ttaattaaga aaatacagtg caactcataa gcaaatgaga aaccaaacca
      121 ccctcttgag tgttgattgc ctcgctcgac ccctggtgat acagaaacag gcaaaattaa
      181 aaaggacatt aaagcttcat taaatctgaa acacatttag tacagtgaca tatctgcagg
      241 ctatttcagg gaagattaca gactcttttt tcttaattta taataccttg acaat
//
LOCUS       KCOD01001264             631 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 141255pyr ultra-conserved element
            locus uce-1985, sequence.
ACCESSION   KCOD01001264
VERSION     KCOD01001264.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 631)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 631)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..631
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="141255pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>631
                     /note="ultra-conserved element locus uce-1985"
BASE COUNT          184 a          128 c          119 g          200 t
ORIGIN      
        1 ttttcactgc aggcttctct tctgcttgca ggtgaggccc ttccccggga gcgcgtgccc
       61 cggcgctgca cggggctcca ttaaagccgc tgttcaatag tttggtgata ttcagacaat
      121 attgaaacat tcccaaatga actttgcagg gagacatttt cattcgctgc ctccctcctc
      181 atgcatatta acaaatggta tgcaaggcct catttaattc actgatttta cattcggatc
      241 actttctctt ttacagctat ttttaccggg cttcattaat ctttgttgaa tacaatggca
      301 tacatcttta atgcggccgc tgtcaagtca tatttcagta agagctgcaa actgaatgac
      361 agcaagcaat attaataaat ttaacataga ctatatcaat ttttaacaga atgaatgtgg
      421 aaagctaaat gtattatttt tcgtttaaat catagggttt atcaccggtt aagtagcagc
      481 gatttcggga aacttgtgac gtgccgtaca aatagattta catctcatta ataagtaaat
      541 taggcaaatg cctttcaagt tcagacaagt acataagtgt aatctccata ttaaaggagt
      601 agtctttgat aaaccactga ggaattgcag c
//
LOCUS       KCOD01001265             725 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 141367pyr ultra-conserved element
            locus uce-5969, sequence.
ACCESSION   KCOD01001265
VERSION     KCOD01001265.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 725)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 725)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..725
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="141367pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>725
                     /note="ultra-conserved element locus uce-5969"
BASE COUNT          225 a          121 c          118 g          261 t
ORIGIN      
        1 ctttaattat atttaccatt tggaccactg tatatttgtg tgacccagag ttatttaaaa
       61 gtatttcatt ttcacaggtt tccactattt ttctatagat aaattagaaa agcttgggaa
      121 attgcatact gaaaattgaa ataaggacta taaaatccat tttgagactt gccttttggt
      181 gtttacttca aagcatgctt ctgtgtgtgt gcttgattta catttagcaa tatctaagtg
      241 caaatagtaa tcatacacca aagtaaactg gactatatgc aattgcttcc tctgtttctt
      301 caattgcagt tgcaatccca tagattcaaa tcttgacagg tagcataatt agaaaattcc
      361 ctttgtctta ttaaatgtga ctcttctcaa tagaattcac ttcattgcag gcaaagaaca
      421 gaaaatatac ttcaaatcta aaatgggaaa tcaaggggga ctgttttatt tttatctgtc
      481 tttgtgcaag cgacattatt atcaaaggat attgtaatgc tgaaaatgta cttttgggat
      541 ttaaatcacg tattagcctg gaaagcaaaa agtgctgtag ggcccatgca atatattttc
      601 tcattaatct gattgaaaga ttatccttcc tatagctatg aaaagtctaa tacccatata
      661 tccatctttc ctgctagtaa aattcagctt tgtgcgtagt cattgtctct tgtgtctgag
      721 gtcct
//
LOCUS       KCOD01001266             443 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 141471pyr ultra-conserved element
            locus uce-458, sequence.
ACCESSION   KCOD01001266
VERSION     KCOD01001266.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 443)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 443)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..443
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="141471pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>443
                     /note="ultra-conserved element locus uce-458"
BASE COUNT          115 a          108 c           98 g          122 t
ORIGIN      
        1 agaaatttct tgaacctaaa gacataatct ggtgatccaa ttctccccac tgtgtccatt
       61 cccgtgaaac tccatttact ttctcctatc cgtcaccagc tcccccgcat cccacctagc
      121 cagtcctcta ggtttcccac attgtttccc cttttgtctt ttcagtccaa acagaagaac
      181 aacagacaag gtttcgaagg gcagggagca tcaggggctg gaagagaatg gctaagatga
      241 gggtcagagt cccagcccta ctgccaacag ttactagggt ttgtgctgcc tggctgggca
      301 gtgttcaaag actttgctgg gctttgttcc actgtgtagg gattaggcct ggcggtctga
      361 gaatttgcct tctaattaaa aaggataaaa gatagaagta gcattagact aaaacatagc
      421 agtgatactt cacaggcttt ttt
//
LOCUS       KCOD01001267             698 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 141581pyr ultra-conserved element
            locus uce-4784, sequence.
ACCESSION   KCOD01001267
VERSION     KCOD01001267.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 698)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 698)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..698
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="141581pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>698
                     /note="ultra-conserved element locus uce-4784"
BASE COUNT          217 a          104 c          112 g          265 t
ORIGIN      
        1 taatttttag aagcaatttc ttatcagatt aatagataca ttttgagttt aagaaaatta
       61 attgtacgat ataatgaaag atttttcaag agctaagaca acataattta aaatagtcag
      121 cttaagattc agaaatataa ttttgctttt gttgcagttg aaaaatgaag gtttctttta
      181 tatactgtat atcccaagat gatttcaaag cactttcact tagaaaagct agctgctatt
      241 acatatgaat tttcaaagct tgccaaggct ttggaaggaa tgatgaaaat tactattgca
      301 cgaccttcag gttttctttg tttcataaaa ggctaagata gcatttttgt catttttctt
      361 tcagctcagg tctttcatca taaatatcaa agcatgcaat tatgcctgct catatcctac
      421 cgtattctgc ctgttttcta tccatagtga tggtgttctc ttttaggata cctttttctt
      481 ttgtttttcg caaatctgaa agaagtccca tgtttttgtc gagtgccata aattgttcat
      541 gaaatgcatg ttgcactgat taagaagaag atttgattct tttattcttt tgttctaagc
      601 aaaatcgtaa agtaatgttc aagtgtcaat cctaagactg atttggccta caggtggaat
      661 ttttaaatag tgctcattaa aatgggacaa tcttctat
//
LOCUS       KCOD01001268             422 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 141693pyr ultra-conserved element
            locus uce-7038, sequence.
ACCESSION   KCOD01001268
VERSION     KCOD01001268.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 422)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 422)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..422
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="141693pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>422
                     /note="ultra-conserved element locus uce-7038"
BASE COUNT           97 a          110 c           98 g          117 t
ORIGIN      
        1 cactgaccag agggtgacaa gtggcaggtg gctgggatgg caagccacag ccacagcaag
       61 atgggaaggg ggctggtgtt atttacctgg gactaaactc aggcactgtt tgctaaaata
      121 gaagctgggc ttaaattgat tcctagtgtc tatatttcat gttgaaaatt ggcttgtaaa
      181 tccatgtttt gatctatgag ggccgtctcc ttaagaaaaa gcaagagtaa atgtgtaatt
      241 tctcccttga cagcacacag cgcagaggcg atccttcttc ccgctcccct ccgtttcggg
      301 acagctccac tcgttccgat taccactctt tcttcctcgc cccacgcctt gatgtctcca
      361 tttcattacc gcccgcccat ttatcaagct gttaccgtaa gggtgacttt gcccacttgc
      421 gt
//
LOCUS       KCOD01001269             501 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 141798pyr ultra-conserved element
            locus uce-4190, sequence.
ACCESSION   KCOD01001269
VERSION     KCOD01001269.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 501)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 501)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..501
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="141798pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>501
                     /note="ultra-conserved element locus uce-4190"
BASE COUNT          146 a          112 c           95 g          148 t
ORIGIN      
        1 ttcagaactc cttccctgat aaatgatagg aaagtttgac agatcagaac gatacgaagc
       61 agcctaaaac atttggcata atgtgtgtct ggcatacaga gactgcttgt caaatgccta
      121 tgactccata cagcagctag ggaccctatg gagcagcaga tggaccatta aggtagtatt
      181 aatgtagatg ccatcagttt tcagttctga ctgggacata ctctttagaa ctatgagcag
      241 ctgctgccat ttattgtgac agcttcctgc taacttttgc caactggcac aatctgactc
      301 tttgtacctg agctattaaa tgtgtgactt ccaccgtttt attcctccag agaactcttt
      361 taataatcct ctgaagaagg agtaaggcat ttatcatcaa agttaataca cataccatac
      421 agttctattg tcctttcaca ctgctgtgga ttttacatca ggagtaagca taagcaagct
      481 tcccatgcct tacacaatgc c
//
LOCUS       KCOD01001270             699 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 141909pyr ultra-conserved element
            locus uce-5260, sequence.
ACCESSION   KCOD01001270
VERSION     KCOD01001270.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 699)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 699)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="141909pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>699
                     /note="ultra-conserved element locus uce-5260"
BASE COUNT          210 a          150 c          128 g          211 t
ORIGIN      
        1 ttcactcttt ttctctcatc catcatcaac ttatctgccc gcaagtcaaa atggtaccaa
       61 ttattaatca aggccagagg cacccgttcc tgcataggag caccatgttt caactgtcag
      121 gtggcatcca tcccagcctc tctttgtcag caataaagaa aatgaaattg gactaatatg
      181 aatctcattt ctgccctgat taaaggccta cattttccct aggcgttgcc tgaccaggtc
      241 ctgacttgtg agatattcaa tgttcttgta atgtcattcg gacacagtgc gcctgtctcc
      301 ttaggtcatt gttcttcaga ttcacttgtt ttacatggaa tataggctag aaaatctaga
      361 cttcctttgg ggtgttaatt aagaagagca tccaaaatta atcagcaaat tcactagggc
      421 gaaggggagc tgtctgaagg cctcgatata aaatgcactt ctagtacagg gaaatgagcc
      481 ttcggctatt gacaaagaaa aaacaagtgc acagacggca atctgacata aaaattcata
      541 tacgtataca attttacatt cattttcctt gtcagcttgt cacctttaat tataaaggtt
      601 gattcgctat ttggcagatc tggaaattgt aaacgcttgg ccatttgaat atcatcatat
      661 ggtcaatgtc ttcaaaaaag aatgacacaa gaacttacc
//
LOCUS       KCOD01001271             752 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 142018pyr ultra-conserved element
            locus uce-2920, sequence.
ACCESSION   KCOD01001271
VERSION     KCOD01001271.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 752)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 752)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..752
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="142018pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>752
                     /note="ultra-conserved element locus uce-2920"
BASE COUNT          255 a          132 c          121 g          244 t
ORIGIN      
        1 aataatactt agaacactac actgaatttg ggagatttca ttttcctttt aatacaaact
       61 tatgtaaatc aggttatttt aaatcctata cagttttctt taataataag ccattgtttt
      121 gacattccac ttaatgctct aataaacaaa aatttgtcag gagtgatacc tacgtacaaa
      181 agttacttaa tttaaaactg aaagacagag aaagcattgc aaatttatga atagtattgc
      241 tataattcta ttataaaagt tattgtgata ctgagtagtt atggtctgct gttaaggtgc
      301 ttctgctata taccctgtag tttgccattt gtaaacacat ctttttgatg tttctgccaa
      361 catcctggca acaaagcagt gcaatttcaa atgagctaat taacttaatt gttgatgaag
      421 catgaaacag ttcattcacc ctgttagctg caccatgaca acataagagt ctcagcccct
      481 gaagttactc atctatataa gcctatctgt agctttccat taagatctat tgcatgccaa
      541 atgagtatgg ctcttctaac aaagaccagt ccataatgta cataggtagc aaatcagtgc
      601 tgctgttgaa aattcagatg aatacagaaa taaatacttt gtgcagaaac ccattgcagt
      661 ttgaaggaaa aggaaaagct gtgtcactaa atgctctgat ttagaaaata gctggctaaa
      721 ccaaatgctg tgacatcact tttcagtcct ga
//
LOCUS       KCOD01001272             577 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 142128pyr ultra-conserved element
            locus uce-7756, sequence.
ACCESSION   KCOD01001272
VERSION     KCOD01001272.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 577)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 577)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..577
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="142128pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>577
                     /note="ultra-conserved element locus uce-7756"
BASE COUNT          126 a          165 c          150 g          136 t
ORIGIN      
        1 ctgcccacac ctttagggga ccaaggacca ggctgatccg ccggtgcccc agggtgtccc
       61 aggacacaga tcaacaggaa gaggggaggg gcggctttcc ttcccccgga tcgcctttca
      121 gcccctgtgc caggctgggg acgctgatgg ggcaagaggc agcctttaaa agggagaggt
      181 tgcatcatgc ggggttgggc gggcctcggg aggcagaaac ctcatctgtt aaacacatac
      241 cgctccgccg gggaacattc aatcctctct ttgatggacg tccaagaaaa tacttcttcc
      301 acatcctaaa cttgttagca ccagttaatc atcttaacct tcttgaacac acactccaat
      361 gagtttccca tcgctggcag ctgttaaaga cgcagcgatg ctttttgtgc cagcctttgc
      421 aggcgaatta aacctccctg ctgcaggtgg gagagcagct acccacatct tgtgctggga
      481 tgcacttctc tccccttccg agctgtacca ggtctgtgtc cctctgtgca ctgcctcttt
      541 gattatgaag cagaagccct ggaaaatatt tgtttgc
//
LOCUS       KCOD01001273             443 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 142237pyr ultra-conserved element
            locus uce-76, sequence.
ACCESSION   KCOD01001273
VERSION     KCOD01001273.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 443)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 443)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..443
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="142237pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>443
                     /note="ultra-conserved element locus uce-76"
BASE COUNT          123 a           96 c           89 g          135 t
ORIGIN      
        1 tgcatgcatc tgtctcttcc tctgtgcttt cccttctcta ctcatccttt atctctttcc
       61 cgctctttct cttttttcca attccattag tgaaagtaga taataacttg tgaattcaag
      121 tggaacttca tttctgaaac cgtacacttg tgctggaacc cattaagctc gatagcgaga
      181 aatgagagaa atcataatta tcaggccagt aaaatacatg aaacataaaa tttgtcaggg
      241 aaagtaattg aaattattgg agcagttggg tcctggtgct gtgcagaccc tcagtgataa
      301 tggaaaggtt acgggcaatg tttagcaatg ctgatgaggc ccaaggtgac tcaacaccac
      361 cacagtcagc aactttatgc tctgcttaca ttaatttgct aatccatctt tggaaatggc
      421 caggctgagc agcacatcgg ggt
//
LOCUS       KCOD01001274             369 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 142347pyr ultra-conserved element
            locus uce-6206, sequence.
ACCESSION   KCOD01001274
VERSION     KCOD01001274.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 369)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 369)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..369
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="142347pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>369
                     /note="ultra-conserved element locus uce-6206"
BASE COUNT           80 a          106 c          106 g           77 t
ORIGIN      
        1 ctctcctcta aactaattgc gcggtgtctg ggcgcggatc gatcggcgct gttgaaatgt
       61 taatgccgcc cgtgcgccgc gccgcgctcc gctggcagct ccaattaatc tcaggtaacg
      121 ccgcgcgcga ccttcgcctc cgagccgggg cagcagccaa gcgatgctta tgtaattaca
      181 ccgtgaagtg tgtaatcacc tgccctaatc cccgaggcct cacaattggg ctgccaagtg
      241 ccccgggccg gcccgcggat gaaaaacgga caattaaagc ggcgtgacgg gggctccgag
      301 gtgtccgctc gatcgtaatt agctgtaatc atggggagtt ttataagaag caatttagga
      361 aatcaagtc
//
LOCUS       KCOD01001275             533 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 142454pyr ultra-conserved element
            locus uce-3472, sequence.
ACCESSION   KCOD01001275
VERSION     KCOD01001275.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 533)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 533)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..533
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="142454pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>533
                     /note="ultra-conserved element locus uce-3472"
BASE COUNT          170 a           80 c           93 g          190 t
ORIGIN      
        1 caaagttggc aggaatttta catgaagagg tgtcaaggta gaaattatac aatcttatgt
       61 gtgtttaaac aatacagtga agtaagtatt actttgtaaa tgatgttgtt tgcatcatga
      121 tttaaacttt gtttaaatac tgtgatagca ttattgcact ctgtgcttgg ttaagccagg
      181 cggggttgat tatcattaag tgttatttat ttctatttta ttaagcctcc ttttacattc
      241 atgttacagg ttaatttata cttttatttc atgcactact tggctttact gattaatatg
      301 ccccatggca ttcaataaag ccaggcagtg gaggaaataa gagtggtatt aatttctaac
      361 attgctataa atttgcctta ataaaactag ctcaataaca ctgcagtagt agtacaatgg
      421 atgcttccaa attgttagca aagacacaac tgaaagaaca acactcaatt taagaatgcc
      481 tttttactag tgttcaaatt aggctacctg ttataatact gagtgctctt aca
//
LOCUS       KCOD01001276             548 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 142564pyr ultra-conserved element
            locus uce-5898, sequence.
ACCESSION   KCOD01001276
VERSION     KCOD01001276.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 548)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 548)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..548
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="142564pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>548
                     /note="ultra-conserved element locus uce-5898"
BASE COUNT          174 a          104 c           96 g          174 t
ORIGIN      
        1 ctcaggttta tttttcctag ctttggagat gtgtccatgg cttgtatgct ccctgtagca
       61 ccagagtcag gagtcaatgc tgtttgcaca gctcactccg attatctctg cagcgcctgt
      121 aacctcagag cagtaaacca gtggcatata tatagttgaa caattatatg tattgtgact
      181 aaatttcccc caaagatctc attcaggatg ttagagtgaa aggatcataa aatgaattaa
      241 tagctgattc actgtataat ttcctagttc aatatacttt agtgtaccag ctaaatgagc
      301 catacacagc attcagctca gccagttaac agctttatca ttgagatctc aggcttagaa
      361 ataaaagcaa ttcttctgaa gtaattgcgt ctaattaaaa gaaacattta aaaagtgtaa
      421 ccaaaaggaa ttcatttcaa atggaaaatt aatgctgaaa aatagccctg agctctcttg
      481 tctttgctaa tagctaagca ttctcagaat aattaaactg ttttgagatg ttgatacctt
      541 tccctgtt
//
LOCUS       KCOD01001277             785 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 142675pyr ultra-conserved element
            locus uce-837, sequence.
ACCESSION   KCOD01001277
VERSION     KCOD01001277.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 785)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 785)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..785
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="142675pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>785
                     /note="ultra-conserved element locus uce-837"
BASE COUNT          233 a          153 c          154 g          245 t
ORIGIN      
        1 acagtcacaa ctttaaatgt tttttaaatg tagttactgt ctttgatatc aagggactat
       61 gtgttcagat atacgctcac atgtccaact aactgaaagc ctcaatttgt gagaagaaga
      121 aaagcgaggc tggggacact gtacaaacgg tgtttacacc actgaagtgc ttttgaaatg
      181 gaaagactct gcatgaggag gcttgcagct atgccacagc cttgccgata ccagtgagga
      241 gctcatcttc aatgtagtgt tgaacgtagg tggcaaaact gtaatttctc tcttttttta
      301 aaactatttt ttcttctttt atttttgaaa ttttcatcta agcggcagtt tcttgtacta
      361 tagtgactcc tgctgggaga gttaagttga agtagctgaa ggtctcttac agatatatca
      421 actcccggcc agtaaaaaga tgtcctaaac gcaggagatg gagttaaact gttcccctac
      481 cttggacgca atggcttctt tcatcactaa gaacaaaccc ctaggtttta caattgagac
      541 tgagaaacta gtacagtact tgtacaattt ttgatctaca gcatcacgac gtgaagctgc
      601 aacaattaga tgtaaagggt ccattcatga ggaataacat cactttgacc ctttgtgtta
      661 gctcctactg ctaatctttc catacgcgtg aacttacttt caatttgaag aagatgaaaa
      721 agtcttttgc aaaaccccaa tactgttttc tgatctatgt acctgaatgt agaaacgtag
      781 tctta
//
LOCUS       KCOD01001278             901 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 142786pyr ultra-conserved element
            locus uce-5383, sequence.
ACCESSION   KCOD01001278
VERSION     KCOD01001278.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 901)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 901)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..901
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="142786pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>901
                     /note="ultra-conserved element locus uce-5383"
BASE COUNT          262 a          188 c          189 g          262 t
ORIGIN      
        1 tggcatttta gtcatcatgt taatgtcaac aaacaaggca gattaatgct tataatcctg
       61 agctgtctca cactctgctt attagaactg taggcagatc ttcattagga tgaatgacat
      121 ctgaatctat aagctcatca caacagaggc accttcttgc tgtggtgtca ccctgcagat
      181 gacaatgtcg gccattatga atgacactcc acaattcgtt acttcctgcc tcaaattgca
      241 gttaatcttt catccaaact gtacacatgt gcagctttaa gtgggctatc acagcaagta
      301 cccagtaatg ctgcaagcac atggagaatg acagaaggta aattgcttgt caggaggtct
      361 gtatttcaat tcacagcata ttccaaacac gttgtggtga aagctctcca caacagctgc
      421 tttcattgct aactattttt gatgtaaatg tcaataaagc tccaggccct ttcatatttt
      481 tggccaagac tgtccatctt tccctatgca ggctggcagg ttgagctcca tttatctact
      541 cttaggaaca tgtcctataa taatgattgt ctctggagac cgtttagagt gattgaaagc
      601 agtgattggg acaataggct gctgaatttc attgctggat tgggttgaca ggtgactgct
      661 tttatatcct ctggaggaga ggtggaaata aaaacatggt tatatctaat caacagacag
      721 gcatccacca attgcaaatc tataccttca gtttaccctt ctcatcggaa caacttaacc
      781 acgaattatt acaggactct catatttctc cagtggtcag aggggtttca agaaagcaag
      841 atggggaaga tatgtgttgc ctcactagag gtgagaagga gggaaagaac atgtcacagg
      901 c
//
LOCUS       KCOD01001279             714 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 142898pyr ultra-conserved element
            locus uce-7427, sequence.
ACCESSION   KCOD01001279
VERSION     KCOD01001279.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 714)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 714)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..714
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="142898pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>714
                     /note="ultra-conserved element locus uce-7427"
BASE COUNT          232 a           98 c          143 g          241 t
ORIGIN      
        1 atggggaagt tcaggatttt ttctacaaga aaactccaat gaattagtgg tgactaggga
       61 gctgtgaaaa ataccccatt aggagatgat gggctaaatg taggtccatt tctcttagac
      121 aagtaggata acctttaaga tgcatggaac aacataataa ttgggaaaac taaagctgac
      181 atttgtttcc aagaaattct gtgagaacta tctatggaaa agacatcagt gattgagaat
      241 aatgtactgt ttgaaacttg tgtatccatt tctttaatct catactcttc agtgaacggt
      301 acacttgtgt tcagttttat gatcaaaaac aaagaccaaa gaaggccagc ctcatttgat
      361 tgtgtatatt ctgcctgtct taattatcag tagctgtaag gatacagtgc aagtgatctg
      421 gtaaccagtg gttctcgtcc ttttctttta gggggaaaaa caattttaaa atgtataatt
      481 tattgctcag caataaccat gttgttaaaa taaaaaggaa ttagcaacat gtcttaattt
      541 cccaatagca ttattatatg ttgtatttca gtttactgta tattgtgttt ttgtatttat
      601 ttgtgtttgg aggtcttgct atgtctttaa atgctaataa acaaggacag tgtgtaagag
      661 tgtagaatgc tgaactctga aatgctaaac tgtgttatta aaggtaagta ggaa
//
LOCUS       KCOD01001280             271 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 143000pyr ultra-conserved element
            locus uce-3849, sequence.
ACCESSION   KCOD01001280
VERSION     KCOD01001280.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 271)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 271)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..271
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="143000pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>271
                     /note="ultra-conserved element locus uce-3849"
BASE COUNT           86 a           48 c           40 g           97 t
ORIGIN      
        1 agtgctcgaa tgctttattt taagatagaa ggctcttgaa ccaggcttta ttattgaact
       61 aagactatct atcctttttg acacttttta aattaagttc ttcctctaat ttatgttttt
      121 gtcagctttc ctcctttacc tggctttaaa cagattctct caaagtaata aaccacttcg
      181 gagaggagag aaaaaaattt taacgaccct aggaattcag attaacaaaa tggatcattt
      241 gtatacagct gcagaattat gaaacctttt a
//
LOCUS       KCOD01001281             568 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 143109pyr ultra-conserved element
            locus uce-2861, sequence.
ACCESSION   KCOD01001281
VERSION     KCOD01001281.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 568)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 568)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="143109pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>568
                     /note="ultra-conserved element locus uce-2861"
BASE COUNT          175 a          134 c           95 g          164 t
ORIGIN      
        1 tttcacctct cactgcaacc atttcctaca cagacacaga atttatataa aaggctttcc
       61 tcagctttca tcaaatctag gttgcaggcc tatttcgtaa cattaattct ctccctcacc
      121 aaccgccaca tcaattcagt actttataaa ctatttcagg gatccgattt atcaggcctg
      181 acagagcttc acactgaaat aaacagcact gcctctgctg agctcgctca gtggctccta
      241 tttatcatta tttaattcaa gggcctaaaa ttctctgaca ttattaatag taagatgaat
      301 cactggaaaa ctacagaatc tgtgaccaac gaggctgaaa taatccattt tggtgaaaat
      361 gtctacgtgg aattgcattc cctgatgggt agctgctctg tcattagcga ctccatatgc
      421 atgggtggta aagaactgaa gcatgaagtc cccaaagagt gggatacttc cattctcttc
      481 ccaacactta acaccaaagc agaaaataag ggaatgcagc acagctctaa tgcctctgtc
      541 agttgaattt aaatgtacta atttaatc
//
LOCUS       KCOD01001282             581 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 143218pyr ultra-conserved element
            locus uce-6291, sequence.
ACCESSION   KCOD01001282
VERSION     KCOD01001282.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 581)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 581)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..581
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="143218pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>581
                     /note="ultra-conserved element locus uce-6291"
BASE COUNT          180 a          128 c          120 g          153 t
ORIGIN      
        1 gattaggatc caaacacata attaagaaag tcagaaaggt aacctcgctt tatccagtaa
       61 ttagggctgt tagaaatcag atactgtctc ttaaaagtgt tacaaataca cggcactact
      121 aaataacctg cactgctggg aaagtatact cgctatcaag ggcaaagctg ctatacactg
      181 aggtaacagt aaatgacaga ctgttgttca agtccattag ctgctatgtg ataggagcac
      241 attcactagc acacgacctg tgaaaaatct tagatctctt taaatctttg aattggattg
      301 ctgcattaat tcttaagaac tgcaatcctt caaccaagtc aaattaccct cattaacagg
      361 ggaaaaactg cctctgcaat aagttaaaaa aaagagatat ttattaccta taatcacttt
      421 cacgtacttc acctggaagt aaactgggac agaggctggc accagttcag ctgctggtgg
      481 ggccggggtg gtggtgccgt gcacgtgtca ccctctgtgc ctgtgcgcgc ccctgcaccg
      541 acattcagcg tgaatacgtg tgcttcttaa aaacctcaat g
//
LOCUS       KCOD01001283             693 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 143328pyr ultra-conserved element
            locus uce-1634, sequence.
ACCESSION   KCOD01001283
VERSION     KCOD01001283.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 693)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 693)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..693
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="143328pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>693
                     /note="ultra-conserved element locus uce-1634"
BASE COUNT          241 a          110 c          118 g          224 t
ORIGIN      
        1 attcttttgt tgggatctat tcaacataaa ctgaaaaatt taacatttta cttcctagaa
       61 aggaggatga ataaacaagc acagactatt tcataagatg tgtctttcct ttcctgaatc
      121 agaagaactc caggtttaaa taataaatta agcatagcct aaaatgcaaa tgaagtttct
      181 ctcaataaca cagcgagcta ttaagagaaa gtgtaaaggg ttatgataat tttaaagtat
      241 tatgaactac agaaaacaaa taaaaagcat tttcagtgaa tatgtccaat tcattgaact
      301 attctctcaa tccacttaac tacccacatg tgtacaataa tgatttatag acattatacc
      361 taattatgca tatttgggct gtgttagagt gcctaacaaa agctctagaa agcaacaatt
      421 acctctgttg cttagctaca tagtttaaaa tattcctatt aagtgcagat tattgtggag
      481 gggaaaaggg ggacaaaaat gcacatgtgc accacaatgc atttcacttt actgctgcca
      541 aactgttagc attttgggtc atttccagtt tacataattg tttggttcaa ctgtttgtta
      601 tatgttaaaa gaaaatattg attaattctt attcttcttc agaaaattgg actcatgcag
      661 ggagaggtgg ccttgtgcac tgtgtgcata aag
//
LOCUS       KCOD01001284             596 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 143436pyr ultra-conserved element
            locus uce-25, sequence.
ACCESSION   KCOD01001284
VERSION     KCOD01001284.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 596)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 596)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..596
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="143436pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>596
                     /note="ultra-conserved element locus uce-25"
BASE COUNT          202 a          122 c           95 g          177 t
ORIGIN      
        1 aaccttcagc cctatattgt aaatgtatta tgtctgtcca gatcgagtaa tttgtgtcaa
       61 gataaacata ttgcaggtac tgcaaaaatg ttagtaaata aagaccatat gcatatattt
      121 taaatttaag gaatattcga ctattaatgg atatcaaagg aaagggaatt ttaatcatct
      181 ctccattcag tctcagttgg gtaaatcata tctaagagat ttgcataaat ataaaccatc
      241 aaagactttt catcttcaaa gggggtttca agaccctata agctttgtac tgtaatcatc
      301 gcaggtcaca accctgcagg aataaggctg ctatggcaac ataaaaaact aatgcttaag
      361 gcttagcata atattctgac taatagaaag gaaactcatt ttaaaagctg gcagcctatt
      421 taccagaagc tggattagag gtgttatttc cccttttagc ttccccccac cacccctccc
      481 caaaagaagg aaaatctaat cacccagatc ttgcaatttg cagtaacttt acaattaggc
      541 caaaataaat cacagctttc tctgatgaag aattctgccc tcccatctct gctctg
//
LOCUS       KCOD01001285             699 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 143543pyr ultra-conserved element
            locus uce-4681, sequence.
ACCESSION   KCOD01001285
VERSION     KCOD01001285.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 699)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 699)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="143543pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>699
                     /note="ultra-conserved element locus uce-4681"
BASE COUNT          218 a          151 c          150 g          180 t
ORIGIN      
        1 tggagggaat gggcagcctc acaacattcc caacaactcc tggagcccat gagcccaaag
       61 ggacccatgt tgctcgggcc aagggtgaca cggcttgtcc ttcagcttct gtgtctgtcc
      121 ctgcacatcc agcatcccct ggcagccttc cctgagcaaa caaagtgaat gctgccatca
      181 ccccggctgc tcaccgtccg ggagagaagg ggagcggtgt gcacagcaat acagggaaaa
      241 aagccaattt catctttatt agaaggagat ttctctttta gtaataagca cacttcaaat
      301 aattagcgtg ttttacgtaa taatgaaatt atggaaatgc aggccactta ttcaaacaag
      361 tcaccattac catattttta aatattagac ttaattagag tttatcactt cagagaagta
      421 cgaggagtgg agattttttt cctttacaaa aaaaatcctc ataaagtgtt tattaagagc
      481 gggtaagaag gggataatga tctgtttgga aattaaggca atcaaacatt taatgctctg
      541 cactcctgta ggcaaaagca ttcaaatgag tcaattatac atccattatc caggcacgat
      601 taaacaaggc aggacgggga atttgtcctc cgcatcatgc gattgtcgtg aggacttatg
      661 tccacttaaa ggcagctaat aaaacactaa acttgggaa
//
LOCUS       KCOD01001286             667 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 143653pyr ultra-conserved element
            locus uce-1802, sequence.
ACCESSION   KCOD01001286
VERSION     KCOD01001286.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 667)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 667)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="143653pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>667
                     /note="ultra-conserved element locus uce-1802"
BASE COUNT          194 a          119 c          146 g          208 t
ORIGIN      
        1 atacccagaa attcatggaa ttttgtcctc tagcctcttc ccagttatga acaaaaggat
       61 gctgggttga gtttggccag aatgatccag ttaccagcct catgccaggc cttaaaaggg
      121 ttaaagatgt taatggtgcc gttaaaaatc cagcttgcca atgagctatt ttgtgcaaat
      181 ggtataaata taagatacac ttgtctggct catttgcaag cattcttttt gacttctttc
      241 acacaactgg tgtttttgtg tttaatttaa caagaaatga gtagtaaatg aaagctgctg
      301 cctgaaatcc cactgtgagc gtgttttgca cttggctccc tagtgaaaag gcaatttgtg
      361 aaattatgtg atagagtaat tagatgaagc cagggcttct gattgttgcc atgcgtatgt
      421 ggtaaaggtt tgctggggac acggattatt accctggcaa gttggctcaa agcttcttca
      481 tttatttgta aacagaatat ttagtgaccg cataggaagt agctgtaatc accagctcgt
      541 aaagaaacca cagcagagct tttggatttt tacagagtgc tcatgtaaaa tttaagctgg
      601 gaggcagaat ccctgttaat gtaattagga tctaatttac caccctttgc acacagatgt
      661 aataatg
//
LOCUS       KCOD01001287             591 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 143760pyr ultra-conserved element
            locus uce-4083, sequence.
ACCESSION   KCOD01001287
VERSION     KCOD01001287.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 591)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 591)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..591
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="143760pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>591
                     /note="ultra-conserved element locus uce-4083"
BASE COUNT          195 a          110 c           94 g          192 t
ORIGIN      
        1 aaaacctttc cacagatgca gaatatcatt tataacctct cagtattgtg ccataaactt
       61 aaatgacatt aaacaaaatg tattctttat taatgttatt ggaaaatggt gttccctaat
      121 caaaacatct actggaaaca tctactcagt tcctgaaatc atctctatta gattatgtag
      181 ataccatcta agaaaatact tctaaacttg atctgtcaag acttcaaagt ctataagcaa
      241 atacttagat ttgcattaga tttttgactt tgaaatccat tattgtaagt tccttgctga
      301 ctttgatgtg ctgcctttac acctcctctc tgagaaagga agtgtaaagg cagcacatta
      361 gtttatagat gttcacagac tgtttttcgg ataaggccat ttaaatctct tttgaaggtc
      421 aatcccagct cttatcattc aagaagtaat aataacagag ggagtctgcc tagactaagg
      481 actgctttaa aacataaaat agcaggggtg gaatgaactt acttaactct tgacctagca
      541 caatatcagc attctagtgt tttgctgtga caatgccctg ctaaggcata a
//
LOCUS       KCOD01001288             619 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 143867pyr ultra-conserved element
            locus uce-3632, sequence.
ACCESSION   KCOD01001288
VERSION     KCOD01001288.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 619)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 619)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..619
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="143867pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>619
                     /note="ultra-conserved element locus uce-3632"
BASE COUNT          171 a          137 c           91 g          220 t
ORIGIN      
        1 aaaaatgcaa aggaaacaaa aactagccaa aattccaata ttcaaactcc tcatctgaaa
       61 tcccttttag agagatttct gccttccttt ttctacataa gtaagcaaga aggaaagcct
      121 aactaggatt cttccctcct gcttaaaatt ttctctttgt ctatccatat atttgttctc
      181 attctcagca gaaaaacctt taagccttga agacttttgt ttttttgctt tggtgtcagt
      241 tgatttccta tgaaagtgtt tgatttgcaa tttttttctt gtcgtttgca gaagccgaaa
      301 gcggtatgcc ctcttcgtta cctttccttc caacctcaat cctaccttca ctccttctaa
      361 cttcaggact aattccttgc caagaacaca ggaagataac atctttgtct atctttctct
      421 gtatatacac acacatatat acctgtgtgt atatttatat atgagccccc aatctcaaag
      481 agaacagcat tttgtctctc cagtgtttct tgtgactcac gcactaactt ctttgcagga
      541 agtacaaaat gaaacttttt taggccccct ttgtggagtc attggtgtat cagattgttg
      601 catttgaaaa gcagatttt
//
LOCUS       KCOD01001289             686 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 143976pyr ultra-conserved element
            locus uce-2849, sequence.
ACCESSION   KCOD01001289
VERSION     KCOD01001289.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 686)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="143976pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>686
                     /note="ultra-conserved element locus uce-2849"
BASE COUNT          204 a          128 c          153 g          201 t
ORIGIN      
        1 aaattaaatt gatctattac agtgcatggg ggggggaagc tttccagttg tctttctaat
       61 gtgtacttca ccaaataaag atagaactgt gagaaagcaa accccatgtg ccatccttgc
      121 ctcacagggc aggcagaatt gtctttccag ggaaggacat taggagaaaa gtaaatcaag
      181 gcaatctgat agggaatcgg gactctgtca ctcaggggcg agatattgtg ctgtgtccat
      241 atactttgtt tacttttatg agttgtaacc tgcccatgca agctgttaat gaggctaaat
      301 ctttctgctt gaggattgaa ttacagcaca cctctgggct aatggttata aacagaaagt
      361 cccattaggg ctgcattctg attcagtcat ttgcactatt gtgccgagaa caatgctgag
      421 taaatagcta caaacaaaca atttacatgg aaatggataa aatgtaccta attagtattt
      481 tgttgtttta ttaatgattg cttaaactaa atagcactta gcaacagctc tcaccagcct
      541 ctgcaggtgt gggatgctca agtttctggg gaaggctgcc agaaaattag gcagtttgtt
      601 atattccact tagttcaggt caacagcctg tacctgggat ttcaggtcat tatgtcaata
      661 gtacagactt attggcaagc caagca
//
LOCUS       KCOD01001290             738 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 144087pyr ultra-conserved element
            locus uce-7692, sequence.
ACCESSION   KCOD01001290
VERSION     KCOD01001290.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 738)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 738)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..738
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="144087pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>738
                     /note="ultra-conserved element locus uce-7692"
BASE COUNT          231 a          153 c          147 g          207 t
ORIGIN      
        1 taataaaatt ttccctaatc gagctctgtc agtgaggtgt cttatcgtgg ggaggaaaat
       61 gacaccgatc ctatcgaaaa acagagacga tgtcacagtg tccgcaatca cagctactca
      121 gcctccatat ctaccttctc cacaaacacc aagcactgct ttttcataag aacatcaaaa
      181 cctagcgaag tcattaaaat tgcacccgcg tagagttgca gggatcagcc acactagcgc
      241 aaaatgggat gtgggaaaac agactctcta aatgtgctaa ttccattgtc acgtgtttac
      301 ggcttaattt taatcagtta aaaaagccac acattgcaat aaattggcat tatcttctgt
      361 gacaccagag gacacagttg gttcaaggat ttagagggtc gctggcaaca gtatatagtg
      421 ttacagacaa agtattttta cgcttgaact acggtagcta aggtgcaatc cccagttaag
      481 actgcaaaca aagactataa cccacacagc actaagttca acatgcagac caccttcagc
      541 ctggagacag tgtagaatgc taaactgaat agtgcttttt ttaatttaat ggttaaaggt
      601 aattttctgg ccggtataat tgaggttgca gttcagtagc attctcttat gtgtcctgta
      661 ccaaaatgaa gaaagatcta ttgggaaaat ccctttgctg tatttgcatt cagtttctaa
      721 actgatggtg cttgttta
//
LOCUS       KCOD01001291             238 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 144191pyr ultra-conserved element
            locus uce-3126, sequence.
ACCESSION   KCOD01001291
VERSION     KCOD01001291.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 238)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 238)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..238
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="144191pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>238
                     /note="ultra-conserved element locus uce-3126"
BASE COUNT           67 a           52 c           46 g           73 t
ORIGIN      
        1 actgaggtag caatggcttg tttgttgttc cactcactga gaacttccag tttccaacag
       61 ctcggctccg agaacgtgga ggcacaacac gcgaactgtt gtgatttgtt gccatgatga
      121 cagtgtcaac ttaactacag ctgacaaaca gtttttaaat agaacatttc agttcattat
      181 agtattctcc atctggtttt tttcaccatc tgcatacatg caaaacatct gagaaatg
//
LOCUS       KCOD01001292             490 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 144298pyr ultra-conserved element
            locus uce-4939, sequence.
ACCESSION   KCOD01001292
VERSION     KCOD01001292.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 490)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 490)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..490
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="144298pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>490
                     /note="ultra-conserved element locus uce-4939"
BASE COUNT          162 a           87 c          108 g          133 t
ORIGIN      
        1 ggggagcgaa tttgtgtgaa gagtgacaga acgctttgtc cagcgcagct ttggctggtt
       61 gtaacaagcg tcaggacatt agacgcaaca aaagctggat tggcagtatc atcaatcaca
      121 gctctgacag tcgacttcag tttgtttgtt ccactctgca taataagtga ttggatcagg
      181 tttaattaga tattgggtaa tcaatcattg ccaacaaggc aacccagctt gggatctaga
      241 tgctgcaaag ggggaaaaaa agcaaatctc atccagggtg cataaatact caaacgtata
      301 agcacatagg gtgaagcttc agaggaaagg tataaagatg tctgcaagat ggcacataat
      361 agaatcattc acatctgtac tacttgttac cagacatctg cagtttgaca ttttactttc
      421 gctgcataat tatttttcaa tataatataa tatactgacc tgagggagaa agacaaagca
      481 attaaattat
//
LOCUS       KCOD01001293             727 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 144403pyr ultra-conserved element
            locus uce-5757, sequence.
ACCESSION   KCOD01001293
VERSION     KCOD01001293.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 727)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 727)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..727
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="144403pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>727
                     /note="ultra-conserved element locus uce-5757"
BASE COUNT          191 a          193 c          167 g          176 t
ORIGIN      
        1 agtttaaaat catcacccct tgtccaatca ctataggccc tgctaaaaaa tctttcttgt
       61 aagcctgaaa aaccactgaa agctgcctct tccctgtgcc tgccattcat cgcggaggag
      121 gaggggagct tattccaagg aaaccaatgg atccaaactc tttgccaaag tggactcagt
      181 tccccttgac acaacatcct aattcgactt tttcagtatc tttccttcaa caaccttttt
      241 tccttcctcc ccttcctacc cggcaactgc gcatttatta attcatgagg cactaattag
      301 ttctttgttt aattttgtgt taaacagact gaccggaatg ataacgactt gcagcgttgc
      361 attacggtcc ccaaccgccc ctgttttctg acaacaaggg agcgcagtga gactggcgtg
      421 atgaacccca attcccactc cagttgcact tcattaagtc aaaatgtgac aagaagctta
      481 gagagcaact ttcagatcgg atcgcacata acaattgggc aggaaacttt ccaaggggga
      541 agcgggagag gcactcgcag cgaaggctgg caccgcgtgc aatcccctgg cgtgcctgcc
      601 ttaaaggagc cagctcaggc tgtccaggca ggagtcaggg catgtgctgg cagcagcgag
      661 tgccagaagg gcagcaagac aagccaaagg caggacaggg tgctctcctt caatgacggg
      721 ttatgtt
//
LOCUS       KCOD01001294             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 144499pyr ultra-conserved element
            locus uce-1313, sequence.
ACCESSION   KCOD01001294
VERSION     KCOD01001294.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="144499pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-1313"
BASE COUNT          198 a          151 c          138 g          215 t
ORIGIN      
        1 ccgggcgagg ctgctgaacg ctgcactttt ggattcaatt aaagtgatta tctgttgtgc
       61 caaataaatt gtgtccagca tctatcctgc aggattttac acctccagcc tcattattcc
      121 ctaactgttt cctcctgttt atgctctctc caattaaatt gctgataata tccaaaataa
      181 aaaacgagcg caccttgtcc ggagaaaatt gattccccct gcaccgggcg attgccaggt
      241 tttatatact ctgttcctgg cgatcattag taattcaatt ttctttttat tagccccctt
      301 atctgctgag caatatagtg gcagagctga cctctttctc cctgattaat tttgccagtt
      361 aaggaaaaga ggagaaatga tccggctctt tgccatcaca atgaataaag cttaatgttg
      421 attgtgatgg aatttctaat gccaaggaaa ttgattgaac gcagcaatta ccccgcaata
      481 ggaactccag ggaaatggga tggcgccggc cgtagccttt tggttattta aaacaatcca
      541 atttgcaagg ataattatat attagtgttt tatctgccac cgggaatgaa catgggaatt
      601 ttgatactgg cccggcatta gcaggttatt gctgcaaatt actccagatc tgctttcttt
      661 cacataaaga cgaaattagg ccatcaataa ccagaaaaag gt
//
LOCUS       KCOD01001295             888 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 144604pyr ultra-conserved element
            locus uce-692, sequence.
ACCESSION   KCOD01001295
VERSION     KCOD01001295.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 888)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 888)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..888
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="144604pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>888
                     /note="ultra-conserved element locus uce-692"
BASE COUNT          295 a          122 c          150 g          321 t
ORIGIN      
        1 taaaaaaatg taaagcattt aattcctcaa atgcaacttg ggaagattat atttcctgtt
       61 gcaaggagtt tcttgtaagg aattttcttg tgaaatgctt gattgagtca atcaaaagat
      121 gggatattac acatttgata attttgcaca tgacagacag gatttcatac cggtaggtca
      181 tttgattctc tgcaggtggc tctgttggtt tctggaatat tatactgtga attacatgtt
      241 acacaaatga aagggtgtta taattctgga taacattgta tttgattcta taaacatctt
      301 taggcctaat gcaaagatcc ctttgaataa tttatccagc taagtgtctg tggtcccaaa
      361 cttctaattt aaaaatgttg ataaatgaag tatctcttta gctaataaat gaagtatctc
      421 tttagttatc ctttgtcagc aacattcatt ttaatggaaa gtgagtttac agggttacat
      481 gattgaacta ctgagccaag tcagtgttgg caaatgatgg gctaaattat tgatgttaca
      541 cactaatgaa ttctgatgag aaataaaata cagacattac atttcaagtg gttcataatt
      601 atttttgcac tttaaaagca attttattct ttttccaaat catactggtt ctgtaaaaca
      661 aaaacatagt tagtgattat aagcaaaatt attgagtttg aggcaaaaac gcttctgtaa
      721 gttttcttat gcaagtatat tgctattcac actaggattc tgatttcttc ttatacttct
      781 gggagaggat aattaaatta aatgtctaaa tttttaaact gctgtcttta aacaaaataa
      841 tctactttgc aaccataaga gttcagtaga tgagtttata atctatga
//
LOCUS       KCOD01001296             580 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 144816pyr ultra-conserved element
            locus uce-2247, sequence.
ACCESSION   KCOD01001296
VERSION     KCOD01001296.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 580)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 580)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..580
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="144816pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>580
                     /note="ultra-conserved element locus uce-2247"
BASE COUNT          155 a          113 c          145 g          167 t
ORIGIN      
        1 atcccggcga ttccacgcct ttgggtggat cgcagaaggg agatttttga cattttacaa
       61 ataaaaagag atgcgggtta tttatgctgg gatgttgctg caaagtcctt atctccatgt
      121 ggcactaaac aaggatttgt tgtgggattt gagagggctg tgtagtgctt cagtgttaag
      181 cacccaaaac tctgggggac tggcactaat ttcctctctc tcgtaaaaca acatagtatt
      241 cataacaact cgagaggctt gacataagta atgatggcat atgcaggcga agattaccac
      301 cccaacagtg taatcaaggt gctaggtact aatgcaagtt aaattgagac aataatgctg
      361 aaacttgcat tgtgggatta ggagagtact tgaaatgctg acatcggcat ctcctggaag
      421 cgcgcctgtc ttcctttcaa ttcctgttta tacttaatga cctcaaaatt tgtatgtcgt
      481 taacaccgtg tactgaagtg ggagagaaca aggtttggga gggagaagat tccctgcctt
      541 cgttgacttt tgtctctcct ggtaattggc ggcggctcgc
//
LOCUS       KCOD01001297             647 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 144926pyr ultra-conserved element
            locus uce-4931, sequence.
ACCESSION   KCOD01001297
VERSION     KCOD01001297.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 647)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 647)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..647
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="144926pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>647
                     /note="ultra-conserved element locus uce-4931"
BASE COUNT          195 a          113 c          134 g          205 t
ORIGIN      
        1 aaaaaagttg gggtgggatg taggaaagca acttggaaga aatacttttt ttctcagtta
       61 ccagaatctg cattcaattt ccaagtcctg gtcctattaa ataccagaca aacacagact
      121 gctggagcag cactggttat tttgcaatgg gctgtgtgaa agctgaggtt ataagaactg
      181 ttaaagattt gaaatatttt tattcagaaa tctgacatga tttgctagtt gtgacaactg
      241 gtttgacaat gaccagtgat ttaggtctac ctgtaataag tgaattaatc tgagttaaaa
      301 catagtgatc tgtcatgttt agagatacct caacagctgg ctgacttgtc ctctgtcaag
      361 ctagtttgtc ctgtgcaaat cttctgtcaa gtacggaaaa gaactgttga gagaaaatta
      421 catggcagtt tcagagttag tgatgaattt ttctcccaac ataccagctg tgccagcaac
      481 actatttttt gtggcattaa tcaaatatct tgcctggagc accttctctt ttccaaaggc
      541 tagaagatga atctgtcaaa aaatttcaca gggatttgcc aagagctttt cctaagctca
      601 ggtacttagt ccatgcactc aaaagtttga attagggatg ttgttct
//
LOCUS       KCOD01001298             539 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 145036pyr ultra-conserved element
            locus uce-3227, sequence.
ACCESSION   KCOD01001298
VERSION     KCOD01001298.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 539)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 539)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..539
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="145036pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>539
                     /note="ultra-conserved element locus uce-3227"
BASE COUNT          193 a           88 c           96 g          162 t
ORIGIN      
        1 aggcagaaaa ctaaagaaat aggggtcaaa ttccttctgt gagatctacc ttgtaaaatt
       61 atccagaatg taataatacc atgttattga cttaagcaca gttccctgtg acatgctgca
      121 gctgacctgt aatttttatc ctacatgttg ccagcactat taaaatgaca cttgtgaatg
      181 taaattaagc tcacaaaggg gacagattgt atgattctgg tttctctcag atgcctgtag
      241 gctatcacag gttccatatg tgaagtaatt atgttcactg aaggaaagaa taaatgctgt
      301 caaattgtgt actgagagag aaagcagcta ttatattgca gtagtcactg gagcattgcc
      361 ttagaaagtg aaaagatgta taagaaaata atcaaaaaga aaaactggag cagagctata
      421 ttaaatataa cctttaaatg agtatctgct tttgaataca tattacacaa agctaatatt
      481 tcacaaataa aagcatttta ccattttaat cacatcttct ttctcacatc tagagggca
//
LOCUS       KCOD01001299             642 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 145142pyr ultra-conserved element
            locus uce-2048, sequence.
ACCESSION   KCOD01001299
VERSION     KCOD01001299.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 642)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 642)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..642
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="145142pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>642
                     /note="ultra-conserved element locus uce-2048"
BASE COUNT          190 a          122 c          133 g          197 t
ORIGIN      
        1 aatgaagaaa catgataagt caacagatat taattaaatg ttaaaggcag gttttaaagt
       61 accttcaata tatgttgctt ctaataacgt tcaagtgcac ttaagggagg tcaaagatct
      121 ttagatcccc ccggctcccc cagcctttcc ataaccaaat gctttcatat gagtaatcga
      181 aagaaacctt tagtcaacca ctggggagtc tttacagcct gccttcgatt ggagtctgag
      241 tggaggcctg tgagcaggat ttgtaagcat ttctaatggc attttgatgt acatgtacaa
      301 aattgatgtc ggaaggatca ttgtaaactc ccaaacagtg gaatattgag gacattttca
      361 ggtggcagtc agattctggc tgggtgagcc tggtatattt tctcatgtca cagttgatta
      421 ggttcacagg gaagtggaaa gagtaaaaaa ttctcttatt actgcagcaa tgccatatca
      481 gcctcttttc cctttgaatg caacattagt ttttgtccgg aaatctaact gctttctaca
      541 gtttggggaa ttgtaaagca gaaacaattt tcccagctag gctgaccttc acagtaatga
      601 gaaatgactg gaatttctct ctatttctcc aacatttcgt ga
//
LOCUS       KCOD01001300             657 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 145254pyr ultra-conserved element
            locus uce-6165, sequence.
ACCESSION   KCOD01001300
VERSION     KCOD01001300.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 657)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 657)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..657
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="145254pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>657
                     /note="ultra-conserved element locus uce-6165"
BASE COUNT          202 a          133 c          127 g          195 t
ORIGIN      
        1 ggagcaggcc tgaagcttgc tcagccaaag ccatgacagt atcttgctcc taacaggtag
       61 agaactcgtc agcccagcac acctccagca ctgaaagtca gtgctgagag cagacaagtt
      121 ccatcactct cccagaggaa caatgagtgg gcaagggaag ggagaaagga ggggaagaaa
      181 gggactaagg agtacatgca cccacatgtg aagctctgac aaacagtcgt gtgatttatc
      241 atcatactcc cacttgtaac tctaacctaa cagtgtgtca tctttacttt tcatgttatt
      301 tatttacaag tgcattttca gtatcaaccc tttcattcat taatcctaat gtggcctttt
      361 tcaatgtcta cttaccattt taaatactta ctataattta cagggctttc ttgaacacat
      421 ccaaggtata ttatatgggg ctagcttaat ggaaagtctt gtacaccaaa gcaggaaaaa
      481 agcacattta atttatgatg gctttgaatt ttgctcataa tttacttctg gagaactatt
      541 catataaagc cacaccaatg agaattttca gtggcgatgt agaaggcaat aaatgctgat
      601 cttattattc atttttattt tgaaagccat cccatgttgc attctgggat tatgtaa
//
LOCUS       KCOD01001301             664 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 145363pyr ultra-conserved element
            locus uce-4151, sequence.
ACCESSION   KCOD01001301
VERSION     KCOD01001301.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 664)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="145363pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>664
                     /note="ultra-conserved element locus uce-4151"
BASE COUNT          219 a          112 c          136 g          197 t
ORIGIN      
        1 aaatccaaat cagattccga attagagatg tttcttgatg ctgtagtgag gggaagggaa
       61 aacaacactt gtaaaatgtt tttattgaaa cttaaaggca attatttctg aactcccatt
      121 ttcttaatta aaagtgtcac cgatttgtat ttaatcagca cttaacaagc cttattgaga
      181 agggaaagag ctaaacaatg tctttaatag aatgggaggg ttagctgaac tttgtttaaa
      241 tataaaggga gtagtgcatc tgctgaagaa ctaagccctt tcaaagttta ggacactcac
      301 cagcgccata gcgcataaat cacagtgcaa actgtgtgat tataccctgc agggaaatag
      361 actgtgtgtt tatggggctc ttcaccaagc acttaggaat aatctgatat aaagcagcag
      421 gggaggagag taatgacaac ttcaaattag tttaatgaat gtttacatta aaaaaggctt
      481 ttctacaaac ctgaaaacac aaagtgacag tttcctctcc agacaaaaga aaccccctct
      541 acttttcctt aaaggactgg caatggggaa gacattgtaa atttaactct ttctgtggtg
      601 gatcattgta tctttatgtg cagtgttttg ctgtcattac agtgacagtt gctgggaatc
      661 caat
//
LOCUS       KCOD01001302             645 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 145471pyr ultra-conserved element
            locus uce-3614, sequence.
ACCESSION   KCOD01001302
VERSION     KCOD01001302.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 645)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 645)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..645
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="145471pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>645
                     /note="ultra-conserved element locus uce-3614"
BASE COUNT          123 a          127 c          238 g          157 t
ORIGIN      
        1 ccttctgaac gtccgcccaa atcagaacca ccctgggtgg ctcggtgagt actcaccttg
       61 caatttccga cgatggaagc gaggagaccc caggaaacta ttcttgatgg agttgagccg
      121 tgtcctccag ggcattcctc caatgctggg gctggatggt ggtgttgggt tgggtgtgcc
      181 tgctgggctc tcctttggcg tatgaacagg tgtccccttg ggggtaggga ggggacttcc
      241 ccttggagag gggtgagggg tgacctgtat gatggggata gatttggtgc ttgggtcagt
      301 actagaaggg agcaatctaa caggagacat agggttggtc tgcactttag gaacagccag
      361 ctgtgggtta aagccggcag caggcgagcg gccctgagca ttctgcacag ggttgttctg
      421 ggaagagggg gcgctggtat tgctggcagg gagtgggttg gatttagtag actggagtgg
      481 tttttcagcc aatttgctct tggatggcaa agtctgcgtc tttgggttgg gctgaagtgc
      541 tggctttggt tggagtacat gtccaggcct ggaggcgttc ctacaagcat cagggtccaa
      601 ggagacttgg ggtcggggag agaaagggag gtcggaggtc tgagg
//
LOCUS       KCOD01001303             515 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 145582pyr ultra-conserved element
            locus uce-2841, sequence.
ACCESSION   KCOD01001303
VERSION     KCOD01001303.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 515)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 515)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..515
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="145582pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>515
                     /note="ultra-conserved element locus uce-2841"
BASE COUNT          156 a          121 c           99 g          139 t
ORIGIN      
        1 ggtgtgcaca agtgattttt ctttaatatt gtatgaataa cagcttttat gcagaaccag
       61 attcagtacc tcaagcaagt tcagcagcct agtgttgccc aactgcgatc aacaatggtg
      121 gacccagcca tcaacttgtt tttcctaaaa atgaaaggtg aactggaaca gactaaagac
      181 aaactggaac aagcccaaaa tgaactgagt gcctggaaat ttacgcctga taggtaaaca
      241 aaacaaatac tccccagtca agacttccct gacagtccca ctacgagaat gctatggtgg
      301 gacagccaag tactcgtttc cacaccaaga ctcagacgtt ttgaggcaaa agccacattc
      361 ttatactgtc cagcttgtaa tgcttaatgt aaaacttacc agatgaacct tgtgtttcag
      421 cttttttctc cccctttgct tcagaggcct gacagcgtcg gactattctg aagaaatggc
      481 catcttcgtc ttttctagaa catgtagaca tttgc
//
LOCUS       KCOD01001304             453 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 145689pyr ultra-conserved element
            locus uce-6968, sequence.
ACCESSION   KCOD01001304
VERSION     KCOD01001304.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 453)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 453)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..453
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="145689pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>453
                     /note="ultra-conserved element locus uce-6968"
BASE COUNT          143 a           88 c           83 g          139 t
ORIGIN      
        1 ttatcaccag ctttgccata aaacatccca ttttaataat caaattagag ccaaggcaaa
       61 cctgtacagg tgagaggaaa tctgtgagca tgatcaaaac cacatttctg attcaggaca
      121 aaatcgcagg ctacagggag gtacatctgt aaattataca ggaagctttc ttcaacaact
      181 gattcaccct gacagtttta ctggagtata tgaaaattag tattaaagat gtgatatgta
      241 ggcttctttc caggaattcc aatctggttt caataaaatg aaaacactga ttggaagtga
      301 agttgccttc cggttttgcc tttggctatt atgtgttcat tcgtgaaatg actgaattcc
      361 acaactactt ttaatattca ccttttgagt tcatctcccg tactggacac attggaatga
      421 ttaaaatagc actgactcct gaagccggat tct
//
LOCUS       KCOD01001305             563 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 145798pyr ultra-conserved element
            locus uce-3007, sequence.
ACCESSION   KCOD01001305
VERSION     KCOD01001305.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 563)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 563)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..563
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="145798pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>563
                     /note="ultra-conserved element locus uce-3007"
BASE COUNT          139 a          124 c          114 g          186 t
ORIGIN      
        1 ggggtgcgtg tgttgccaga gccttgtgtg gattactgag aaagtgcctc cacttcagag
       61 aaatctggcc ttatggtttt gactggagca tcatctcttc ctttaaaagc tctgaccaaa
      121 ttattgagct gataaacgat ttcccttggt tttacatgtg ctggcatgaa ttatccttga
      181 gtgctgcata ttagggttgt tttgtactaa aaggtgttaa acacttgtaa taaatatttt
      241 tccttatttc ccctaggaca ctgttccatc tctggttggt gaagcataaa aaagagctgt
      301 catgcccagt tttaataggc aataggattt caagccccca gagttgtttc acagtctggc
      361 agtggccata atgaaactgg ccactgttgc cacaagactt tttcctctca tgcgttctcc
      421 cctgttacct cccacagctg cttgactggc aggtctcttg caaaccgcaa acatatttac
      481 attggagcca gtagtatttc agctatctgt gccatcttta ttttcctttg cctagataga
      541 gactcaacct taattttaaa gaa
//
LOCUS       KCOD01001306             611 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 145909pyr ultra-conserved element
            locus uce-7871, sequence.
ACCESSION   KCOD01001306
VERSION     KCOD01001306.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 611)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 611)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..611
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="145909pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>611
                     /note="ultra-conserved element locus uce-7871"
BASE COUNT          179 a          109 c          115 g          208 t
ORIGIN      
        1 ttggaggaaa atgcctctaa cctggagaat ggatacaacc taggtgattc agcagagtga
       61 aatttaattc aagaacctgc taaggaaata gaaaaaaata aaatacgtca caacctccag
      121 agaggagaaa gtgaactaaa ctaatcctat taaacatggt agcatgtttc tgtgcagctt
      181 gctgagagat taagcacagg aaaagggata agtgctgctt cagtttcact aaactaatgt
      241 gacaacttgt cattggaaat ctttacagct tgttagcaga tgactagctg attcagatat
      301 gttttctacc atttcctttg tgtctggggg tgatgttttt tctttcctgt tcctttctta
      361 tccatactgc tttattttgc tttttaatcc ttcatgtctc cttcaagtca aaacatttaa
      421 cttgctttaa tcaatatttt gttttgaaga cgtcccttga ccttttgttt gtgcaaatta
      481 accttcaagg gcaactcatt cattcattaa cctcagtggg atgccatatc ccttgtacat
      541 ggcattttag gatgcatgaa acatttatga atgtttagac atattgcagt gaatgactgt
      601 gatagtgctg t
//
LOCUS       KCOD01001307             648 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 146012pyr ultra-conserved element
            locus uce-3027, sequence.
ACCESSION   KCOD01001307
VERSION     KCOD01001307.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 648)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="146012pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>648
                     /note="ultra-conserved element locus uce-3027"
BASE COUNT          206 a          130 c          122 g          190 t
ORIGIN      
        1 tgcattacag gcaggaaact attcatgcct gggacgactg cattattagt cacagcactg
       61 tgacctctca ccccaagtga taaagtacac aggtcagaat tgacaataca tactcatggc
      121 tgatcatggc tgccagttat tgatccaagg aaaaaaaaag aaaactttgc aggaaaaaac
      181 attgctctga attacaaaca tgcattctcc cgagactcag caactctctg ggtttttccc
      241 actggagctg gaaagcaaaa agtgagttca gccagtattt aatatcaagt gaatgtggtg
      301 tttaatcaat actattctgc ttttgttcca cgatgtggaa agcagtgtct attcattcag
      361 taaaggttaa tgccaagggt caagtgattt cacactctct gtaggatcca caacatttca
      421 gtagttcaga tgccttggac aatgatgact cagttggact gatttattgc cactctaagg
      481 tcctgcgtaa tactaaagtg ctatcttatg ataatacctc agaaaatagc actgatgagg
      541 ctataattac ctacattttg aagtaatgtc ttcatctcta acatcctata aagatgtaag
      601 gtccatttaa aatgatctgc tccttgtatt agcaagtcag ttaaatca
//
LOCUS       KCOD01001308             742 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 146126pyr ultra-conserved element
            locus uce-1841, sequence.
ACCESSION   KCOD01001308
VERSION     KCOD01001308.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 742)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 742)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..742
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="146126pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>742
                     /note="ultra-conserved element locus uce-1841"
BASE COUNT          179 a          145 c          152 g          266 t
ORIGIN      
        1 tctgtggtac aagtagccat tattagttct agattctgat gttacactct tgtagcaact
       61 ctactgaaac taatgcaaca ctgcagcgaa ttttgtgaca ctggtgagaa gaggattttc
      121 agacctgcaa atttatctcc cacgaacagc actgaaatcc ttcagcagct tttggcactt
      181 ttgcttgttt gtatattctt catgtacaca tcatgtgcat ctgtgtgtgt ctgtgtgtac
      241 gtatatatga tatgtgtaaa agtacttttt atatagtaac tttctgcata gggcaaccca
      301 aacagctgtt attccttttt atagcttctt taatctatgt gccaacaagt cagtttacaa
      361 aatctgtttt gttgatgact gctgcgataa taattgtggt gttttgtggc ttggcaaaag
      421 cctggggtct cctccgagga ctcttgccaa agcctttgaa ggggttgagg tggattcact
      481 gccaaaatga gtcaccactc tctattttat ttagtgtcct tctgccaagg ccttagacac
      541 tttctgtttt cattcttttg taggctttcc ttcccacatt gtggtttcct tcacagccag
      601 agtaatgtgt ttgccagcat aggtgagaga gtgtggctga ctctccaaat gccactgcta
      661 gactctgctt aagggttagt ggtttagcta ttgtgctttc ttgaatgtgc aagatttaat
      721 tatatgccta tgaattataa at
//
LOCUS       KCOD01001309             625 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 146237pyr ultra-conserved element
            locus uce-3864, sequence.
ACCESSION   KCOD01001309
VERSION     KCOD01001309.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 625)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="146237pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>625
                     /note="ultra-conserved element locus uce-3864"
BASE COUNT          215 a           93 c           93 g          224 t
ORIGIN      
        1 ttatcctact tttgctatct aacagataat gcatttttga gagaaaagtg gatcattttc
       61 ctttcttatt agcacatact ttaccctttg tcatggttta atttgaatac aactgcaaat
      121 ttaaaagtat tttattttta ctgcagctaa ttaaatcaat gttgtatttg tggagctgct
      181 ttaaagtatt aaagtaactt gatcccaaat gaacttaaaa ttttaataca ttttacctta
      241 tgctggctgt ggaagaagtc aaatttttaa atgcaatatg acatatggct gttcattatt
      301 tatacattct gtagcagact ataaatttta ctttggacat atatcgaagc actgaaacca
      361 tttcagttgc aaacacataa atcatagtta cagttattag tctaaatgta atgccaccca
      421 ggttctagat caaaaccttt aaaatccatt ataattgacg tctgctgcat aacttatgtc
      481 tgattttatt aaaggagctc attattattt atatctttga aacattatat tcatagctgt
      541 gtaaccagtt aaatgtgaaa gatttgagga aagcagcaat agtctataaa ccagagagaa
      601 taaggctgta acagaggaca aaatg
//
LOCUS       KCOD01001310             527 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 146342pyr ultra-conserved element
            locus uce-6231, sequence.
ACCESSION   KCOD01001310
VERSION     KCOD01001310.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 527)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 527)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..527
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="146342pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>527
                     /note="ultra-conserved element locus uce-6231"
BASE COUNT          150 a          117 c          109 g          151 t
ORIGIN      
        1 gagctgctct cctccccagg tacagataat tacctttccc taattgccat ctcctggtca
       61 ttagttatgt gagctgttta ccccaaaaca cgtgcttcat cctaggagag ggttaatctc
      121 ccgctggatg caggatgccc tcatgggaat ggaatgtgta gtgttggtaa gtggttgtgc
      181 cccagaagcc tttgagagcc cactgactac tgcatgctaa cgattggtat tattaaagaa
      241 caattgatgg cctgtaacca aacaagagaa actaattact ggaaaacttt tattgtcctt
      301 taattactgg gcctctttgt caattagcag aagagagagg gagagggaca acaataaatt
      361 ttccaaaact gcagtcatca gtagctgcaa aatcgagtct attaacacac aatattaagg
      421 cctgatattt actctggctg ctaaatgtag gtgcttctct cctgaaaaag tgcagagctc
      481 taggaatact aatcactgcc tagctctcac ttcattttac cccttga
//
LOCUS       KCOD01001311             926 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 146451pyr ultra-conserved element
            locus uce-1683, sequence.
ACCESSION   KCOD01001311
VERSION     KCOD01001311.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 926)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 926)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..926
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="146451pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>926
                     /note="ultra-conserved element locus uce-1683"
BASE COUNT          248 a          166 c          160 g          352 t
ORIGIN      
        1 agacaaggga aggaagaatg aagaaaaaaa ttccctcgat ggatgccaca atagcatgtc
       61 tttcattatc gccctgtgtc aaggcactgt gtaatgttca ttgtgcatgc atagtaaatt
      121 actatttacc tgccagtgcc tttgataagt cagtcttttc tccctctttt cgtccacaca
      181 gcatggaaca gtgaaacctc tttgcctata attcttatta aggtgatacc ttttctgaat
      241 aagaaagtac acacttccaa aggaggcatt ctcttgggtt tttaagggcc attgttttta
      301 ttgttttcct tttatttctc ccaccctgct gtgttttaat gctatagtga cttctgtgta
      361 tacaactctc atattgaaat gtctgccgca gatatatgca atattaaaga gtgcttatga
      421 atttttgaca tctaattagt cgctacccag ttaacatgtc aagactcaga gggattaggg
      481 agtcagccct ttctgaataa gttaaagcta tgccctgtcc ttttcatgta ttattcttta
      541 atgtaggtgg tgattatttt gctgtgatta attgatgaag ctcattggtc tggcaagtgt
      601 tacagaattc accattcctc acttttattt ctctctgtag ggctttccca cttatttgaa
      661 aggaattggt tctattcggt ctgtgaagct tcattgtctt tcctcaatac atgcacattg
      721 gtttctctta agattttatc tatttaattt tatatcttta aaggaagcag attaataatg
      781 cttgttttat tttaaaccac atatttcaaa tagggtttct ataatgtgtt gtttattttt
      841 atttttgatg tatactttta gacaaaatta ctgacatttt gaagtctaaa agtagatttt
      901 acccccacat tcaacaaggc ttggtg
//
LOCUS       KCOD01001312             458 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 146563pyr ultra-conserved element
            locus uce-7614, sequence.
ACCESSION   KCOD01001312
VERSION     KCOD01001312.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 458)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 458)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..458
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="146563pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>458
                     /note="ultra-conserved element locus uce-7614"
BASE COUNT          149 a          102 c           56 g          151 t
ORIGIN      
        1 taatattcac ttcacaagtg tctcaggatg gattgaatga acacaataac tacatctatg
       61 gtttagcaat ccaaactatt taacacaacc ttcttccact cacactcact gcaaatcaag
      121 ccacaaagca attcaatcca agggtagcat cacaggaaat aaagacaacc acaaggatca
      181 aataatttag ggactaaaaa gatatactta catctggata ttcttttaca ggcacatata
      241 gtttctcttg taactgtaca ataggtccca cagcatctgg taattctgca cttctcttct
      301 ccgtactacc atttaatgtg tcgttataca tgtctttccg tactctgcta atttctgtcg
      361 tatattagcc attaaataca gtaacagatt ataatctaaa atgacaatct tctctttcta
      421 ttatttccca aatcttaatg ccattttctt ctttgtgt
//
LOCUS       KCOD01001313             688 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 146674pyr ultra-conserved element
            locus uce-2586, sequence.
ACCESSION   KCOD01001313
VERSION     KCOD01001313.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 688)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="146674pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>688
                     /note="ultra-conserved element locus uce-2586"
BASE COUNT          194 a          103 c          136 g          255 t
ORIGIN      
        1 attgaataac ttcaggtgat gcttatggtt cctaaaaatg caagtatcaa ctggtaagtt
       61 tttggaaaat tgaatataaa atcatagaaa aatgctttat ttgattctct gtttatggga
      121 aattcatttt atttgacttt tttatttgta atatcaacta tattgcagag cagagtttct
      181 aggtgctccc ttatggtacc attcttctaa attattaatg ccgtactgtt gatatattgt
      241 cagccttgta catacattct atgaaaatga gttttacagt aggctgggat ttataacaaa
      301 gcttgacata tgcagctaat tcacctagac agtcttgtca gttttaggtt cataaataat
      361 tgatactcag ggcttggagt tcagctactg ttagtgctcc agctgttaaa tttcagcagc
      421 ataatggatg aatatttgtt tataatttct gtacatggac ctgatgtcag atccccggtc
      481 tcatttacat aggtagattg agatgttgga agtgtaatga gcacatgaag atgatgaatt
      541 gttttcctca gcgctggtgc gtttctgtaa atgtttgatt agttttgaat ggattactgt
      601 tagattatct ggttcagggg ttaaagtgag cagctctttg ctcccaaagc tttcgtgatc
      661 ccttgctgac agattttaaa attcatac
//
LOCUS       KCOD01001314             480 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 146777pyr ultra-conserved element
            locus uce-5426, sequence.
ACCESSION   KCOD01001314
VERSION     KCOD01001314.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 480)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 480)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..480
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="146777pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>480
                     /note="ultra-conserved element locus uce-5426"
BASE COUNT          131 a           73 c           96 g          180 t
ORIGIN      
        1 ggtttgtgtt aagtaaaagt taaatcacac tgcaagctgt aggaagactt gttctagaaa
       61 cacccagtgc tagagacttg attaataagg ttgaactgtt actgtttaac aatttgtaga
      121 cttttttttg ctttggattt ctctgctaca ctagtttgcc atgtagcaat tgcactgtgc
      181 aatattacaa tatgaggact gggtttttta tggatgtaat gtctcttaca gtttgcgata
      241 gtatttcttt ctagttctca gtgatttaaa tgtgaccaag ccttctgtac tttgtcacaa
      301 aaagcgggtt ttccaggtga ctattttggt gagtgtcaaa ataagaattt atggtgtatt
      361 actgtcaaga ttcactttga attaaaatat atattgcagc agacgacttc tggtggcttt
      421 tgaaaattga cttttgacta tgattagctt tgctatcttt agtgcagcca caccttgaat
//
LOCUS       KCOD01001315             382 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 146878pyr ultra-conserved element
            locus uce-2371, sequence.
ACCESSION   KCOD01001315
VERSION     KCOD01001315.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 382)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 382)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..382
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="146878pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>382
                     /note="ultra-conserved element locus uce-2371"
BASE COUNT          136 a           73 c           65 g          108 t
ORIGIN      
        1 tttttccaaa tacaaaatga cctgttacaa catcccaggg agaatatgaa ttagcccagg
       61 tcaataggag gtcaaataga cagggtgcta aaatcccttt actactttgt agtatcttat
      121 gctaattcag ttcccttctc tgtgataaac aaagccagtt gaaagtagat agcatcacac
      181 agtgatgggt cccaaagcta caatttaata caaatctagt aattccatta tacaacacat
      241 ccagttcatt tagaggcaac gaatacttag aaggtccagg actgaaatgc ctcagctgat
      301 actttaaaaa tataaataat ccagtaaaat ttcatttgtc actaaaccta atggtgtgcg
      361 ggatggaaat ggtcctttaa aa
//
LOCUS       KCOD01001316             627 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 146977pyr ultra-conserved element
            locus uce-7419, sequence.
ACCESSION   KCOD01001316
VERSION     KCOD01001316.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 627)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 627)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..627
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="146977pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>627
                     /note="ultra-conserved element locus uce-7419"
BASE COUNT          176 a          140 c          163 g          148 t
ORIGIN      
        1 aaggaccttc aaatggaggc ctcaggagcg agggcagctt ccttttgaaa gtggcctttc
       61 tggaagccat aatcggctct ccaactttac agtacacatg ttccccagta aatgtgatta
      121 aagagccaca cccccttgca gaaaattaat tcagtttcca gaataaaaag tttgataaag
      181 ttgtgcaatg ctccaatgac aacacataat agaagtgcag agttttatcc tcttgaagga
      241 taaatgagcg gccagaaagg tctggtagtt cccagagtaa aaacatctgc tacagctaat
      301 tcactttagc ttttgattgt aaaattcatt agccatatca ggcagctgta gtttcaaaca
      361 tgttgctagg aagtacagtt ttataggctg ggatgccgtt tgttctcccc agcagtggtg
      421 aggtagcctg agtgcccggt gaaacgcaac ctcctgccac cgggagaggg ggagggaggc
      481 tggccaggaa gcgcagggca aagaggttcc aagtgccgtc aggcccatgg tggctgctcc
      541 tccacgtcac cagagcagca gcagctgaag gctccagcct tcctgcagga ctgggaagga
      601 gatggctttg tgaattagaa agtaaac
//
LOCUS       KCOD01001317             405 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 147086pyr ultra-conserved element
            locus uce-629, sequence.
ACCESSION   KCOD01001317
VERSION     KCOD01001317.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 405)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 405)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..405
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="147086pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>405
                     /note="ultra-conserved element locus uce-629"
BASE COUNT          143 a           71 c           68 g          123 t
ORIGIN      
        1 ttgtaaccgc agaggataaa cccagctttt atttttccct cttcaactta agggcagctc
       61 ctttctcttt taatggcaac agcttgagag ggacaaagtt tgaatatcct tgtgccggag
      121 aaaagagcag agcgaaagcc ctgctaatta caaaagttgc tttatgaaag ataattcaaa
      181 gcaataattt agcaaacata atcaagtagc gcagatgggg attttgatga atagtttgca
      241 acatgcaatt agcagctctt gcagttacat atcattaacc ctcagagcac aaaaattatt
      301 ttctcattat tagatgaaaa ggtaaaatta agctgactag acagtaaagg aacaaactac
      361 aattaattac cttcatttat tacagtcatt attttaaact tattt
//
LOCUS       KCOD01001318             540 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 147192pyr ultra-conserved element
            locus uce-7982, sequence.
ACCESSION   KCOD01001318
VERSION     KCOD01001318.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 540)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 540)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..540
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="147192pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>540
                     /note="ultra-conserved element locus uce-7982"
BASE COUNT          180 a          101 c           96 g          163 t
ORIGIN      
        1 acacacataa aaccatgcat atgcacatct aaactcccct cctccttaaa agccttaaat
       61 catcctctgc agtttcctag gaaccacact ccagatgtgg tatttaagag tgaatgtggc
      121 taacattact agacttgaac tgtattgtgg gtaattgtcc agtaataacc tttggtaaat
      181 tatatgaagc ctttacttta cttaacaggg aacgcaggct ccccaaactc taatattatc
      241 atcattcaag ataatgagca acacaaacca ttctattacc aatctaaaag caataaatgt
      301 caaagtaaag aactatgcaa tattctggcc tggaagaaca aaggacaaaa gtaatgataa
      361 tgccttttta tatttgcagt ctattatatc atgcataaca aatgactctg taattgtgtt
      421 attttaacag gttgtaaagg gaaaatggtg ggggtggagt gttttgagcg ctccagggct
      481 ggtaaattgg aatgcctgac aatttacttg aattttatcc tgcaggatta ttctgaagct
//
LOCUS       KCOD01001319             650 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 147300pyr ultra-conserved element
            locus uce-2875, sequence.
ACCESSION   KCOD01001319
VERSION     KCOD01001319.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 650)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 650)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="147300pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>650
                     /note="ultra-conserved element locus uce-2875"
BASE COUNT          226 a          112 c          107 g          205 t
ORIGIN      
        1 caaaacacaa aaagcagagc ctcaattatg tacattttaa ctggttcttt gcatagtctt
       61 acaccaaact atcttttcct gttttctatc ctctgttaaa aactgtgctg ccgtaatgaa
      121 ataattttgt ctgatatttg catgaagaaa atattcaaga caaaaattgc aagacaacaa
      181 aatcttaata tgcagtttgg taaagttcta gtcagtccct gaacaacacg tttatctatc
      241 cagtaaagct tgtgttaatg cgatgtaaga gttgggcaaa ttcaactcta atggagcata
      301 aaagtgcttt tgcttgaaag tgagatcatt tttaaaaatt caaagcatga tcacttctcc
      361 ctttttttgc aggaacaatc tgatacaagc agcaaagctt aaataaacta gaaacatttc
      421 aaatgatcca taaaggatta ataagcactg caggaagtcc tataggctca gcgtatacat
      481 tttccatctt tttctcctgc gataggcatg acgtgaaatt ctaaacagaa ctcaagtttc
      541 aaagtcactg aatgttaagg tctgaagctt tgataccagg gtagagtggg gtcaccatct
      601 tggaatattt aatttaaata gataacaaaa tattgatttt attagcataa
//
LOCUS       KCOD01001320             511 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 147410pyr ultra-conserved element
            locus uce-6920, sequence.
ACCESSION   KCOD01001320
VERSION     KCOD01001320.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 511)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 511)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..511
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="147410pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>511
                     /note="ultra-conserved element locus uce-6920"
BASE COUNT          172 a           76 c           84 g          179 t
ORIGIN      
        1 cagtattgtc actaatataa aatcagatta tctattaaaa gtgtaaattt gtgtcttgta
       61 gacttaaaac tgctggatac tgcaataaaa atcgtgtgtg ttagttttta ttattaactc
      121 tagctttgaa ttagaattcc ctctattaca gcttggagct aaactctgtt tacaaaacag
      181 tatttacact tgactaattt tgcagatcaa actaattaaa tcaattaaac tggtgattaa
      241 ccaaatgaag gctgattgca aaaattagtg ggtttatttt ggaggactgg aagtaagcta
      301 attactgtag tgattacttg aacctggagt actctaaatg tggtataaat tgaaacctca
      361 tagtgaatta gactgggaat tcattacagt ttaaagcact gttaatacta ttcaggctgc
      421 tactcctgtg ggaaaatttc actcagtatt ttgtatactg ataaacaatc atttagtctg
      481 tgtcctttta aataacacca agcaatttca c
//
LOCUS       KCOD01001321             585 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 147519pyr ultra-conserved element
            locus uce-3463, sequence.
ACCESSION   KCOD01001321
VERSION     KCOD01001321.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 585)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 585)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..585
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="147519pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>585
                     /note="ultra-conserved element locus uce-3463"
BASE COUNT          163 a          104 c          138 g          180 t
ORIGIN      
        1 tggaaggaaa aactcttgga aatgaagccc agtttagatc ctattcccta gggaagttgg
       61 gtgcccacag ggctccaatg gggtgagaaa acctcctgct tcctttgctc ctgctggagt
      121 gggcccttct cattccacac tggcagttcc ctgtgattga aatatgaaag catgtagctg
      181 ttaatctggg agtgattaaa gagcctcatt tcttggaaga gtcagtactc atcatctgcc
      241 gtgctgaatg agcctctaac atcccctgat cccattatat tgtgattaat tgtgccagtt
      301 taagtcaata attcatttgt taaaaatagg cctgcaaagt atcatttgtc tcaggggaga
      361 tatcagaata aaaaaaaaaa ttcatttgat acttctcatt aaattagtgt tgggagttct
      421 attgaagggt cctgctcatg aaacatttat tgcaggctta tttgataaga agttgtattt
      481 gtctagaatt atgcctgcta acagatgtaa gggcctgctt gttaatgaaa ggatcagtaa
      541 acaagtgtgt gactgggggt ctgtggtgac agtagcaggg atttg
//
LOCUS       KCOD01001322             390 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 147625pyr ultra-conserved element
            locus uce-5130, sequence.
ACCESSION   KCOD01001322
VERSION     KCOD01001322.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 390)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 390)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..390
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="147625pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>390
                     /note="ultra-conserved element locus uce-5130"
BASE COUNT           75 a          125 c           47 g          143 t
ORIGIN      
        1 cgcggctgcc tctgcaggcc ccgccacagc gtctgtttca agagcccccg acctttaata
       61 atcgtttctg ccgctatctg aacacttcct aattcatccc cttctgtccc tgaaaatcta
      121 aatcctattt aagttaatgc ccttcatttt catttataaa gacagataca aaataattat
      181 ttcctatctc tgctgtttcc ttatcttctg tcctaataat tcctcactgt ctccctttca
      241 tcatctgtct gccatacaag aaacttttct gttagttaaa atattctgtg tgttcttttc
      301 ctcctctttc atatctcgct gctcctgccc tggctccccc ctccccagtc tgcccctgct
      361 tttcatgctc acccttcctg tttgcatttc
//
LOCUS       KCOD01001323             624 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 147734pyr ultra-conserved element
            locus uce-7210, sequence.
ACCESSION   KCOD01001323
VERSION     KCOD01001323.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 624)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 624)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="147734pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>624
                     /note="ultra-conserved element locus uce-7210"
BASE COUNT          192 a          105 c          124 g          203 t
ORIGIN      
        1 gcagcaggaa cacgtcaaaa atcacagcat aaccctgaaa attgtccttt gtcgaagaaa
       61 attagcaaag gcctgaactg tgggatctct ctatttttgg ctcaagagag aaattctgaa
      121 gctgctgatg atttgaaatg ggtcctgaag agaaggaagg aaggtttttt tttaacttac
      181 aaaattgtct tgcctgtgta ataacactga gcatgactgt cactccgaag acatattagc
      241 tcatttaggt aattagtgtg agcagcatgt ttccctgctt attccattca attatagggt
      301 gctcactttg tcattactgg agtatcttaa tgtgacttgt aattagtgta attacaatcc
      361 aatgttaatt atatctgcca cttagacata attttatata gtaatggtct tattctcaat
      421 aaccttatta tgttgtttat tcaaacagga atttagcctt ctttcatgcg tcaaatatgg
      481 agattacgta ccgcctgtca tttttgtagt tatgactcgg ggagcttaaa atcatatttg
      541 gggcaatcaa tgaatggagc aaaccaaatt atagggttag agacatgctg aactcacaga
      601 aatgatttgc acaggaggca catt
//
LOCUS       KCOD01001324             499 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 147836pyr ultra-conserved element
            locus uce-4947, sequence.
ACCESSION   KCOD01001324
VERSION     KCOD01001324.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 499)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 499)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..499
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="147836pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>499
                     /note="ultra-conserved element locus uce-4947"
BASE COUNT          149 a           92 c           81 g          177 t
ORIGIN      
        1 aaaaggaagg atttactttt tgaattgtgt agatttcaat cttgtctgaa aatgcaatct
       61 tcatccattc agtgacacaa gaagttatac ccaaacattt agaaacttgc ctccattccc
      121 tttcctcctg tcattatttt atttaatttc agttttttca acagtttttg agtgtttcag
      181 atagcaatat ttcattctgg aataaaagct aatgatccat aaatacttaa tgccatattt
      241 ttatggccag taaattagtc ttaaatgagt tcagtaagtt ctctgacgta tgtcattaat
      301 tgctcatggt gttttaacta gataattgtt gtaaaaggtt gtttatcatc accatttgac
      361 tgttcctcgc aatctgtcct gcctggtgct gaacttgctc ttgtgtgcgg caaacagatc
      421 aggggactgc atagcatagt tcaaatatca aattcaaaca tgtctagtga acaatgaacc
      481 tacagaccat cagactcag
//
LOCUS       KCOD01001325             491 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 147939pyr ultra-conserved element
            locus uce-5147, sequence.
ACCESSION   KCOD01001325
VERSION     KCOD01001325.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 491)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 491)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="147939pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>491
                     /note="ultra-conserved element locus uce-5147"
BASE COUNT          165 a          106 c          119 g          101 t
ORIGIN      
        1 aaaaatcagg tttaggtgct gagctgttac aaagaggagt tcacttggca tttggacagt
       61 gttaaaactt tttaatgtgg atgctagtgc agaacccggg gattaaagag acgcacagct
      121 cccacatgca ggaaaaggag gttggcacag cagcccgcgc ttgcccatca ccgcgggaag
      181 ggacaggcat agcaaccaca agcccaaaag cagaaaagcg cataccttca gcttggaatg
      241 aaaatcacga gatttccttc tggcaagaac ctgaatgtga ctagacacct gcagggtagg
      301 ggaagggagg aaacaaagga aaagcctgta accatggaga tgaaaagccc cctacaactg
      361 ggcaagccaa acgtacctta atggcggctt gaatttctcg aactttcttt cttgctaaga
      421 cctgtatgtg actagacacc tacattgttc aggtttataa caacaaacaa aagaaaaagc
      481 aaatcaaatt t
//
LOCUS       KCOD01001326             728 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 148051pyr ultra-conserved element
            locus uce-4098, sequence.
ACCESSION   KCOD01001326
VERSION     KCOD01001326.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 728)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 728)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..728
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="148051pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>728
                     /note="ultra-conserved element locus uce-4098"
BASE COUNT          210 a          134 c          125 g          259 t
ORIGIN      
        1 aacaacaaaa ttgtaagaac aacctgctgc ttcctactct gtataaagaa gttccttgtt
       61 gatcccactt tttaggcttc taagagctgt aaggataaac aattctgtaa gtatgtgtag
      121 gcacttatat catgcatacc agaataacta ccttccctaa gttatctcaa caacttaaat
      181 gccatatcta tctttggctt cattacattg ttgcaccaca agaaaactgt agctggcatg
      241 tgaattactt tgcttctctc tctctctatt ctcctaggcc tagtagatgc tgcaatcgat
      301 gcagcttccc aagcaggtgt gtttgtatgt tgcatggcca atctgtaact gggtggaaga
      361 cttacacgta ctgacattgt taatcaggat tattgggctt ttggcttact gacgttactt
      421 gtaattctta ctggcctgca gctttgatgt tgtatttcat actcagttca acgttttgct
      481 aacatttctt ttgatttcta aacataagca aattcatcaa taaccatcat cttattcacc
      541 tatgaattac agttacttag atggtattgg agagtttttg tagtatttcc aaatacagct
      601 aagtcattca cttgataatt aaagttttta ttatattgat atataatggt tacctagaaa
      661 tgagaattgg ttaaatacga tgtaagatga tggtgcctga aggatctttc ttctctagtg
      721 aaagtaaa
//
LOCUS       KCOD01001327             658 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 148161pyr ultra-conserved element
            locus uce-4509, sequence.
ACCESSION   KCOD01001327
VERSION     KCOD01001327.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 658)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 658)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..658
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="148161pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>658
                     /note="ultra-conserved element locus uce-4509"
BASE COUNT          120 a          146 c          139 g          253 t
ORIGIN      
        1 ttttctatag atgtttttaa agaactgttt cgaatcatct ccctgcaata attggatact
       61 tttgccagga tttggctttc ctatagattg caactttggt ttatgtcctg gagagtagca
      121 gtgcaaacgt ggcctcgtgt ctggaggtgt tggtatattg tctctgtgct ctttggtttt
      181 gagacttatt cttgtgtgtc gtgattgcat ttcacccttc caacttcaag ttgctaacat
      241 cttgtagtgg tgttctgtct cttctcctct cctttctctg ttctccccgt tcttgttttc
      301 tcacaggctg tgcgaagttt aactgtgcat ctgagagagt gaccttcaag cctggtggca
      361 ggaggacccg atttctgagt acgccctgct tggctctttg tgtgtaacac ctttactcct
      421 tccttgtctg ttttgttttg tctttttgtt tctgctgctt ggatctgttt catgcagccc
      481 atctcatctg gcaccttgta gctcagctca gctgcactta gcacaccttt agaagtttgg
      541 gttctcatgt taggtgttct ctgctgttaa actcactgac tcattttccc ttctttagtg
      601 gaaacttcaa atgacacaaa gagagttagc aacatgagac ttatctttct agtggaag
//
LOCUS       KCOD01001328             572 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 148270pyr ultra-conserved element
            locus uce-5704, sequence.
ACCESSION   KCOD01001328
VERSION     KCOD01001328.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 572)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 572)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..572
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="148270pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>572
                     /note="ultra-conserved element locus uce-5704"
BASE COUNT          152 a          112 c          103 g          205 t
ORIGIN      
        1 ttttgctgtt tcccttattt acatatcaca taaagttact ttttagattg atcttttcag
       61 aaatctgccc gggctaggtg tcattaaaag ttatttcttt aaaggtttgt gcccgggtag
      121 ggcatttacc tgcctcactg ctgatagtct aaaaatacct ccatgtccat actattatcc
      181 attcttcacg tccaattgct ctgttatggt aatagtcaga agcacaccat gtagtaatta
      241 cttacagctg acttaagaaa agaatattca actcccccac tgttccacta gaaggtcttt
      301 atgcactatt aactcattcc tgtttattaa tactctactg gtaattctgg ctgctgcttt
      361 ttaggtttgt aataggagga ctattaaaca gcaattattg accatatggg ttagtgagta
      421 tttgtggtgg ttgttgggtg gttgtttttt gaagctttat tttcaaggag ccacatcaca
      481 gtatagtggt gcaactttac atctgcctgg gattaacaac tttggcagcg ttccccacct
      541 agaaaatgca aattccatat ttcagaaata tc
//
LOCUS       KCOD01001329             546 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 148380pyr ultra-conserved element
            locus uce-5289, sequence.
ACCESSION   KCOD01001329
VERSION     KCOD01001329.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 546)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 546)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..546
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="148380pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>546
                     /note="ultra-conserved element locus uce-5289"
BASE COUNT          181 a           99 c          111 g          155 t
ORIGIN      
        1 atcaaggaca acatttctta aaactttttg gcctggtgta tctgtgttag ttcgtattac
       61 tgttatttca gaaaattttg ggtattccgc tcaaaactat tcccttggtc aagtgaagat
      121 atcaaccaga caaaattagc atctaattac gtaccttgct atgtgcataa actacagaac
      181 ctaataattt ccaagtgcct cctcttcggt ccatgcgcac catacgaagg atctgtagga
      241 aacgaagact tctcagtgct gatgttgcaa aaatgttacc ttgagttttt gcagaaacaa
      301 ctgctattga agcgatgaga acaatgatgt ctgaaagaaa tacattacag aaagcattaa
      361 ttatcagtaa atagtacata catctacatg agctgaatga gaaggacaag tgggtggtaa
      421 tccaaagcac agagattcct gtttaagtag ggatgtgaga tcagggttgg tgtcaaaaac
      481 tacctcagga gcctccattg aagaaacttc atgcaggaga tttgaaacct gatgtagcaa
      541 actgta
//
LOCUS       KCOD01001330             457 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 148487pyr ultra-conserved element
            locus uce-4845, sequence.
ACCESSION   KCOD01001330
VERSION     KCOD01001330.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 457)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 457)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="148487pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>457
                     /note="ultra-conserved element locus uce-4845"
BASE COUNT          133 a           79 c           69 g          176 t
ORIGIN      
        1 ttagtagtta cttctataaa caattacatc catgtaaaaa gctttatgat tttattttca
       61 tcattgacag gctgagctgt gtagctgtca tactttgcag tcttccctcc agtgacaacc
      121 acattgacaa catgttatac tccacattga ttttacagtt aaggagctga ttgtgatata
      181 tagggatttt aagaattcag ctgagaggat gacttttgcc ttttatcatt ccattaaaat
      241 tttataacca tctttttcat gtcatttcat ccatgaattc ttactttaga aagtgatagc
      301 tactgctgtg agcataactt ttttcatgtt cagagctttt tattgtatta gcaaactatc
      361 ccaattatag ttaatactca tgttttacat aattgtggtg accctttcaa ccaagcaata
      421 tcgtgctagt tgatttgtac atagaattag atgattc
//
LOCUS       KCOD01001331             698 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 148598pyr ultra-conserved element
            locus uce-3430, sequence.
ACCESSION   KCOD01001331
VERSION     KCOD01001331.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 698)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 698)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..698
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="148598pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>698
                     /note="ultra-conserved element locus uce-3430"
BASE COUNT          198 a          146 c          120 g          234 t
ORIGIN      
        1 atgaatggga tttgctcatt ttagtttatt atcttcatct gtttctctcc actaaagaag
       61 agagaaaagt cccactcatc ctcctgccct cccctcacag agaaagtggc aattgtacca
      121 ttaagcctgg agtgctttac atatgcaaac acaaacacag tgcagatctt tcctatccat
      181 atgttcatct cctttccttt acctaaagca gacgattacc tcagcagctc agctgtgtta
      241 ttgagacatt tcagcgtgaa atttgttttt cctcactgaa ctttaagcgg aatttcaagt
      301 gccaagtctc caaagccaag tggggctatt aagagataat tactaattat gctaatttga
      361 gaagttgtgc tatttctttc cctggtcatt ttatctgcag ctctcctgag agaacagtcc
      421 ccattcaatg ttaataacct ttccaggcta agcattcaat ggaggacagt gtgtcctaaa
      481 tccaggaata ttttacggtt aatctagata tgtgcctgta aattagaaag aggagcaagt
      541 tgcctaatgc taatgactta tgttattaat tttttagcag aaatatctga ttcctctcca
      601 ttcatgtatt gatatagctg atggttttag agtcctcagt gagttgaaat attcagtatg
      661 ccaacaatat ttctcagtga tcattttcta atcctacc
//
LOCUS       KCOD01001332             626 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 148708pyr ultra-conserved element
            locus uce-5955, sequence.
ACCESSION   KCOD01001332
VERSION     KCOD01001332.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 626)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 626)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..626
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="148708pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>626
                     /note="ultra-conserved element locus uce-5955"
BASE COUNT          196 a          126 c           81 g          223 t
ORIGIN      
        1 tttaatgtgg attttaaaag acttaacaac tttaatttac attaactgtt gaagcttcaa
       61 ctaaaattgg catgatctgc ttctcagcat tccacccaaa caaaatgtcg gtgttgataa
      121 aatccacttt taaaaccatg tatccttgca aatctcaagt actgtcatct catcaccctg
      181 ttggagtttg attgattaca ccttttcctt atgttcatta atctcatcac cttatctttt
      241 acaccacttc attttagcag aaaggcaata ataaaaccct catccattat ccttttacgc
      301 atctagtcaa gcggaaatgg ttaataacat gctacaaatt gaacttcaat cacctcattt
      361 tctcctttgt cgaatgcaca ttaaagtata ttccaaaagt gcaatttgtt ttacagggga
      421 atttgtgtta tattgctaca gacaactaaa attaagtgtt tctcagtttg gttattaaat
      481 atatccaact gtccttttat ctctgatact aaaacattaa ctcattttat tagggtgtaa
      541 taatacaaga gccttatctc ccagaacaca gggacatcta gtctgcctaa tagtaagtgt
      601 tatacaatgg gtcatttatc tttctc
//
LOCUS       KCOD01001333             480 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 148819pyr ultra-conserved element
            locus uce-7415, sequence.
ACCESSION   KCOD01001333
VERSION     KCOD01001333.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 480)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 480)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..480
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="148819pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>480
                     /note="ultra-conserved element locus uce-7415"
BASE COUNT          159 a           78 c           97 g          146 t
ORIGIN      
        1 tttttttttt aaggtttcta cttaaagttc tgtgccaaag ctacagtact tatacatttt
       61 ctaaatgtgt tttaagcaat aagttgtaca acatttttag aacatgtgtt aagctatttc
      121 tctaagaatg aagctcttaa caaaacataa gcactctgca tgagatctta gcagcaaagt
      181 gcttaaaaga taaagtaaga attggtacca tgggaagaac accagctgta gagcacacag
      241 gtccattatg agaagtatgg tagtgggtag ggagaaaatg atttaatcag gagtaaaacc
      301 aattttatta taagggcacg cagggggtgt ggcaccatag tgagagggac atttcaaaat
      361 atctgacaga tttcaacaat gtgaaaaccc accctgttct ttaaagtgac agtaaacccc
      421 atcaggtctc tctttttgat gctattgtta acagttgact gtttaaagct ggcctgctaa
//
LOCUS       KCOD01001334             760 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 148926pyr ultra-conserved element
            locus uce-6138, sequence.
ACCESSION   KCOD01001334
VERSION     KCOD01001334.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 760)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 760)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..760
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="148926pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>760
                     /note="ultra-conserved element locus uce-6138"
BASE COUNT          191 a          191 c          165 g          213 t
ORIGIN      
        1 tcctcctcct ccttttcctc actccttttt tctttcctgg ggcaaccatc ctgctagcca
       61 tttcttctgt gaagaaggca ttccatctgt tgttggatgc gtcccagaca cctgaattga
      121 taaaacaacc tgccccagga tgcagagggc ttcatttcgg atcataagaa aggttatctt
      181 tcttctacaa tggggtcaat ctgggtggcg gcggggaaat ccaaacaaac ccacccatgc
      241 aaagactgct cctgcttgtg aaaagcgtgc ttgcatccac tggaaagaaa aggctggagc
      301 cccgctgtgg gctgtttgta tgattgtttc tttccacagc tgtgtttttt tgaactgctc
      361 ttcctgtgtt ctgttataga atagtcttac aggaaccaat cattagcgct aaaatacctc
      421 aggtaggagt gccagtgtga cctgccaacc aatcagattg tggattgcag tggaaaaaac
      481 tgaattatac taaccattcc agcaccacat tagagatggg aacagaggct tttttagagc
      541 agcgcagact cacgtgtgag ccaagccccc gctgtagcag ggcggcgtgt gtccagattt
      601 tataccaagt ggcgtttcac tcaaaataaa aaccaactta aattcagaac aaggtcatgc
      661 ttgtcccatt accatgtaga agcacctgct gcagtggaca cggttgtcct gtcacctctt
      721 ttaattcatt catgctcatt cctggtgcac gtataccacc
//
LOCUS       KCOD01001335             753 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 149036pyr ultra-conserved element
            locus uce-1014, sequence.
ACCESSION   KCOD01001335
VERSION     KCOD01001335.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 753)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 753)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="149036pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>753
                     /note="ultra-conserved element locus uce-1014"
BASE COUNT          246 a          135 c          137 g          235 t
ORIGIN      
        1 aaatgctaga agaaaataca gttctactca tgttcttatt tgagttcatc agccactagc
       61 cttttataac ttatttggtt gttttagaaa atttcttcac tgcattaacc acattttctt
      121 tagaataaga tcaacaccca aggctaaatt taaacctcag gaaaggaaaa agaatcttta
      181 atttatgaaa ctgaacaagt agacttatct aaacatctct agggctttaa tgggggatat
      241 ctataattct ctgaattgta ttcctttcac agtgatattt tgtaattcca ttctattacc
      301 cttgcttaac attaatgaga taaaaagatc acattatggc gattgatgtt cttcaaatta
      361 aatgcacgtt tccatgtaca aagctgtctg ctaatttaaa aaacatagca tgtaacatag
      421 aatcatgacc atggtcatca ctcagctggg atcagatagc attttttatc tattcattgg
      481 atttaacaag gcatgagatg gaagcagaat acaaagtgtg ggtagattat cccatattcc
      541 cccttttggc cacttcttgg caatctcagc aaggaaactg aggcttcatg ttgccatgga
      601 gataaacctc aaggtcaaag gggcatatgg aaggtcaggc aatgacaaag gaacatctga
      661 gaggccatct ggatgagtga cctgacataa ttagtcatta atcccactct tgggaacaat
      721 agagttagcc gagaatgtgt ttggactttg atc
//
LOCUS       KCOD01001336             367 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 149138pyr ultra-conserved element
            locus uce-4118, sequence.
ACCESSION   KCOD01001336
VERSION     KCOD01001336.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 367)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 367)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..367
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="149138pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>367
                     /note="ultra-conserved element locus uce-4118"
BASE COUNT          113 a           67 c           79 g          108 t
ORIGIN      
        1 atccggtcgc ctactttcag ctttccacag cggtctgcgg ggctcccttc aattatccga
       61 cctattttgt gaggcatggc cacacatgca tttcccgctt tcgtattggt tgtttacata
      121 tgtgggaata tggtgaaggg gaaaaggaaa aaaagggttg aaaagggaaa gagaaggtta
      181 agggttaatt aattaatgca tcaagcaaaa gttattatag gatagctttg ctgccagtgt
      241 tcaaaacatt ggcaatcaac tagtatgagt gcacaaactt cttccacaaa aattttgtta
      301 attcctcaag tgggtttctg ttaataaatc gtttagcagc ctcatcataa cccaaatgaa
      361 aaaattg
//
LOCUS       KCOD01001337             683 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 149243pyr ultra-conserved element
            locus uce-7016, sequence.
ACCESSION   KCOD01001337
VERSION     KCOD01001337.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 683)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 683)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="149243pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>683
                     /note="ultra-conserved element locus uce-7016"
BASE COUNT          211 a          128 c          119 g          225 t
ORIGIN      
        1 tttatattca acaaattaaa tggccttgtc taactttaaa tcaccagtaa tttgtcagtt
       61 aatcaccttt tagtataagt taagcaagaa tggagtataa gcagtagaaa gcacagagat
      121 gtagctacgt taaatcatca caaagaagag tactgcagtt aatctccatc tatcatttgg
      181 cctctctgcc tagcattctc atggagatga taaaaaaaat gattgagcat tcaggatttt
      241 ttttactatt acattcaaat atatttttgt tgattgatta ctagaatcat tatgaattct
      301 gtttttacct agaagcatct ttgctattac ttgtatttgg ccctttaaaa agcgcagact
      361 gaacaagacc agttaaactg gcaatctgtt tctccatggc ttgtatcctc tctctgtaag
      421 acaagagaac cgtttgttaa agccagatat atttgctttc agacttgcta ggtgaatgat
      481 taccacagga ttggaaagac actacagagt ttgtgcaaag gcccttgggt accagtttgc
      541 atatacctta ttgcagcagc ttaccacatc ttggtttgga cagctttcac aagacaggca
      601 cctaaaacaa tttgttaatg cctcttggaa ctagtgaaat tcagcattac atgcatttta
      661 cctacactgg gccaatcgtt ttg
//
LOCUS       KCOD01001338             598 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 149458pyr ultra-conserved element
            locus uce-6762, sequence.
ACCESSION   KCOD01001338
VERSION     KCOD01001338.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 598)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 598)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..598
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="149458pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>598
                     /note="ultra-conserved element locus uce-6762"
BASE COUNT          156 a          124 c          123 g          195 t
ORIGIN      
        1 aattattgaa acactgtatt gctagagtga aaatgatcca ttctctcata cctcttaaaa
       61 agagactttt ttttatgtgc ctttaaagtt actagttgtt atggacacct gaggagttca
      121 tgggtttcag tgacctttta ctgtggacct gtttccagtc aattcatgtt ttcctcatag
      181 ccagacagct gtttattatc gtgtcttctc gcattctcta caatattttc tactgagacc
      241 tcgagcagct tgttagtggg aagtaaatat tgatttggca tcctgtcaat gcagaaagaa
      301 tgaaaaaatt tccaccagag gcccctcaaa cattttccta tcgacatttt ctgggcagag
      361 aggaaagctg catagaggat gacaagtctg agactagcag aaatccctga ggggtccatt
      421 gagactgctg ctgtgacctg tgtgatactt tttcttctct ttcaagtctt taatacacac
      481 agagtctgct gggatgctcc cctcttgtaa gtgatcaagg gcagtttatt ggcaggtgag
      541 agcccagctt ttctaaccat agtcagcttt tgtttggaca tcactggcaa catacact
//
LOCUS       KCOD01001339             683 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 149565pyr ultra-conserved element
            locus uce-175, sequence.
ACCESSION   KCOD01001339
VERSION     KCOD01001339.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 683)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 683)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="149565pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>683
                     /note="ultra-conserved element locus uce-175"
BASE COUNT          226 a          129 c          106 g          222 t
ORIGIN      
        1 gaaattaaat gattcattag gcctaatgaa tgatgctgat catatcatct ctaaaataca
       61 gtcagccagc attgatgtat atatagttta actcgttctt cccaacttta ttaggtacat
      121 atgtctacag cagacacaaa tgaaacattc tacaactagg ctccaagcca aaaactaatt
      181 tattctttaa tgtggtagtg attacttggt ggttccttga gcagagatga caggtctgag
      241 ctaatggagt tgtactgtaa gttaatataa atcatgacag agcaattaat tacagaaacc
      301 actgtaaatc cctttgttag ttttccccat caccagaagg atttaataat gttcattttg
      361 ctaagttcca gtgacattta caagtcctaa accattttta atcaaatcaa tatctctggc
      421 tgctaaattt agttgtgctt tgctagcaag ccctggaatg catctatact aatgtttctt
      481 accttctgtt caagtaaatt gtactgaagc cccacacttc ctctgcattt tttacattga
      541 gtttttctta atgagcaaca taagaagtaa gtgcatccaa aggaatttga gctagacaga
      601 tatacaaata tcagtgctta tgatgcatct caaatttaag gaaatttccc ttaattagca
      661 gaaaactctc caaaccaaag aac
//
LOCUS       KCOD01001340             664 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 149673pyr ultra-conserved element
            locus uce-7453, sequence.
ACCESSION   KCOD01001340
VERSION     KCOD01001340.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 664)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="149673pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>664
                     /note="ultra-conserved element locus uce-7453"
BASE COUNT          213 a          121 c          154 g          176 t
ORIGIN      
        1 gatctaataa cagagaaaca ggtatacatc aaactttcat ttaatttatg gatggagcaa
       61 gactagatct ctttacaaca tcaggcttga aggaacattc cacagaaatg ggcacatgca
      121 gtggagtaag ttttggtgcc aagcacacca atggatctga gggtacgaac agttttaaca
      181 taggtttatg agcagagaag gaagaaaagg agctgaagaa aatgagacag aatatgatga
      241 ctcggaacat ctgacctgtt agttggtcgt cgcctgcagc aggggcgatg cgaatgtatg
      301 gtgttgtaag ctgagtcacg attatcgcag ctaaggcaaa ggaagagttc caggtcagca
      361 tgcatgaggg aaaaaaaagc cagactgaag ctatgccagc aagaagaatc ttggtcaacc
      421 gtttattgtc tgaacttcac aaataaaaac aaaactccca caagttcctt ttcatcttca
      481 gttgttagtg tggttattct gcaataataa gctgtcgctt caggaaaagg actcactgcg
      541 tttgaggaaa ctggagactc tttggctctg ctagccacag cactaggctt tgtaagtgaa
      601 aacagctgat tattgattac tctatgaact tctccaattt gagctagttt caattttcct
      661 attt
//
LOCUS       KCOD01001341             407 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 149783pyr ultra-conserved element
            locus uce-1050, sequence.
ACCESSION   KCOD01001341
VERSION     KCOD01001341.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 407)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 407)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..407
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="149783pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>407
                     /note="ultra-conserved element locus uce-1050"
BASE COUNT          140 a           64 c           75 g          128 t
ORIGIN      
        1 tttactacac atttatattg cagagtaatc aataaattat tatttcaata tttattggaa
       61 tctcagaata ggaaagaaga cagattacac aaatccatct tagttgatta atgggtactc
      121 cagtaaaagg catacactga tggagtgggt cagtatgcag actatattac tgaatatttc
      181 agctcagttg taaatatagt atctgtttct cttagggact gtcacactga gtgcagtata
      241 aaaggcaata aatttcaaca gattaattaa ctctttggtt actggggctg tgtgtcacct
      301 atcctggcac ctaataaaaa atcctttaat gccaagacat aaagaagggc ctctttgaaa
      361 atgagttatt aacagcattt cgtgaataga tggagaaatt gtagccc
//
LOCUS       KCOD01001342             514 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 149897pyr ultra-conserved element
            locus uce-366, sequence.
ACCESSION   KCOD01001342
VERSION     KCOD01001342.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 514)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 514)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="149897pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>514
                     /note="ultra-conserved element locus uce-366"
BASE COUNT          146 a           96 c           99 g          173 t
ORIGIN      
        1 aagtcttacc aagtcaaatt ctttcatctc tcctcctgtc atttattaag ttctcctttt
       61 aatagtccat gtgtatgtgc aagtttgact tcaggtgcgc aatcctgaaa tcttaatatg
      121 caactttttt ataaacaata caaagaagtt gacaggtctc aaaggggctt gtgtgaaaag
      181 ataattaagt gctttagaga gtgtcaagag tcaatagctc agcactgtca gcatcctcaa
      241 gtgttacagg ctataattag atggcatgga ggtgtaagag atgtttggca gtttattcca
      301 gcatgatctc gagggtaaag agctgcctcg acactatgag tgaggagagc aggaacatta
      361 aaacctcaca ctcttttagt gacttagaca aattgctcct ttgtggagat gccactcttt
      421 gcaaaatttt catccatcta tcttatgccc caaattttga ttgtgaggtc actggtactt
      481 ttgcttttta ttcctgattt actaaattat ttca
//
LOCUS       KCOD01001343             605 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 150007pyr ultra-conserved element
            locus uce-1540, sequence.
ACCESSION   KCOD01001343
VERSION     KCOD01001343.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 605)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 605)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..605
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="150007pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>605
                     /note="ultra-conserved element locus uce-1540"
BASE COUNT          200 a          134 c           97 g          174 t
ORIGIN      
        1 agtggaaata gatgaaaaaa tgttaaaaat aaaccttcat gtgtgaccac aaagagtttg
       61 ttacctttaa acacagggaa cctctgtctg tcttccacaa acaacacaag gatgtagatg
      121 ttacagaaat acagttgcat ttcacctggc agtttgatgc agcgtacttg cacatgacaa
      181 cacattgatt ttacttctac ctccatgcag acatctacgt aaagaaatcc attaggcaga
      241 cagttctcat ctctattgac tgacagagtg acaatcgaat acttttcacc ttccaaactg
      301 actgacagct agacacttaa acaagccttc aagttgcaat aatagtatga aacactttca
      361 attacctgaa tcaaacaaat ccatgatccc actagttgaa tgtatttttc tgtctgctgc
      421 tatgcctggc ttggtttaca ctgttgtttg ggcaattcag aatgctgcaa acaaacagca
      481 gcccagggct tctaaacaat gaattatacc tcaagtagta cagatcttta taaatacagc
      541 cagccttttg aatcacttcc tttctagcct agcaatgaag cgaatctctt aaaccatcat
      601 tagat
//
LOCUS       KCOD01001344             664 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 150115pyr ultra-conserved element
            locus uce-5521, sequence.
ACCESSION   KCOD01001344
VERSION     KCOD01001344.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 664)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="150115pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>664
                     /note="ultra-conserved element locus uce-5521"
BASE COUNT          214 a          137 c          136 g          177 t
ORIGIN      
        1 acgcaggtgt gcaaacagga caacatcccc agcacctcag tttcaagttc agctacaaaa
       61 aactcaaact cccaacagtg atttaaaaag caaccaccaa accaaaaagt gttcagcttt
      121 tgcaagaaat ctaggggaaa agaaaagagc agaatctttc cttccaaggg aggattgtga
      181 attgtctccc aactgcactc ctgagcgtga atcaattttc ttccagtcga taactagcgc
      241 aaaggttcta accttcattt gtgctccaaa tactcaatcg gggatgtaga acacatacca
      301 attaagcaat tcagctaaaa taagaaggcc gtgaaccaac atcgttgctg cagctgcccc
      361 tgagggatcg agggttagca gcttggggaa aaggtaattt attgagctta atactctgcg
      421 aaatgttctc atgataataa gattgtaaga tcgttttaat atctgaagtc atgttgaaaa
      481 ggtcatttct cactttttac gcctacctaa gtcatgtaaa ttagagctac tcaaacagag
      541 ttgaggatgt ttgcagccta agtttttctt ttgggtgaca gagaatgtca gtaatcccaa
      601 gtggtggacc cacgagtttt agaatagcaa cagtaatgaa gctgtgcatt catctttgac
      661 ctag
//
LOCUS       KCOD01001345             693 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 150221pyr ultra-conserved element
            locus uce-2293, sequence.
ACCESSION   KCOD01001345
VERSION     KCOD01001345.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 693)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 693)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..693
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="150221pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>693
                     /note="ultra-conserved element locus uce-2293"
BASE COUNT          231 a          128 c          145 g          189 t
ORIGIN      
        1 aacaggggta gttccctact cctgagcaca gctaaggaga tcagtatagg gaaggtatct
       61 aaaacttgaa aatatatgaa ttactgtttg aaaggctaac tttaattctc taaattagca
      121 cagtaaaggc tatggaagag tattttggga aattatttat gaaatgtaga tgggccttca
      181 attgggaata gggctgggca aaatgttagt ggttctttgt tcttgcagct ggcctgtcaa
      241 attacacaga gccagcacag taaataatac tactattgtc tgcctgtgtc agagacagac
      301 agaaggtaca tttggacttg gtccaaacac cacaagggcc actcatagcc acagtgtcca
      361 attactgctt gcttgactat aaaatgcact ttttttgcag agctaattta agaatggcag
      421 cttttaatgg ggtttgtatt aaaaggggac tgctgctctg gcttttgcct gcgttctaca
      481 ctgtacagga agcaacaaaa acatacagag tgaaaataat cagagtatga taacattagc
      541 acagcaataa caacaatgat agcaaagtca atgctttgca aaaaaaaaag atcaagccct
      601 tctggaaata gccctcaact agattatctc aaatgatgaa acaagtgcat ccactcagac
      661 tctgcggatg tgcacatgtt gcaaaacttc tct
//
LOCUS       KCOD01001346             662 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 150331pyr ultra-conserved element
            locus uce-88, sequence.
ACCESSION   KCOD01001346
VERSION     KCOD01001346.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 662)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 662)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..662
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="150331pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>662
                     /note="ultra-conserved element locus uce-88"
BASE COUNT          189 a          143 c          117 g          213 t
ORIGIN      
        1 tagattgtgt tcccttccag ctcagttcct tcaaggatgc tgctcctgac tccaggattc
       61 ccactctccc aattgtgatt tcaccttctc cccggcacct cacttccagc ttgtgagctg
      121 tgggtcagtg ccacaagaca gatcagttct ttctctcaca ctgctgcttt gtaatttagg
      181 gtgatcaggc cacctcaggg tggacccaag gtttgatagc atcctagtca aaagcaagca
      241 gagtatgtac agagcagcaa atgaagtctt ctctgagcca actgttccac ctggacccca
      301 ctacaaatta ttgctttcaa ttaccacctg tgtactcctt cccatgcaac ttattgatgt
      361 aaaattacaa caacactggt ataaataagt tatgctgtgg ttgtaaaatg gaagaaattt
      421 tgttgtagca attatgttca gcaagatgac aaaataaatt tccagtgctg tgcttgcagt
      481 aacctgggga atttaaacct cataatttcc attcatttca gataatttgg agtaatttct
      541 atatgtaata actttgtaat gaaaaacaca gcggtactga agtgatttca actctttttt
      601 ttttcctatg gtatacatgg cacaaaataa ataataaaaa taatatttcc tttttgtatg
      661 tg
//
LOCUS       KCOD01001347             653 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 150439pyr ultra-conserved element
            locus uce-6620, sequence.
ACCESSION   KCOD01001347
VERSION     KCOD01001347.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 653)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 653)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="150439pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>653
                     /note="ultra-conserved element locus uce-6620"
BASE COUNT          202 a          148 c          124 g          179 t
ORIGIN      
        1 tttaaaacat gttaacatat ttctaacctc agcttatccc ctcgctcaac aaagctaaac
       61 atctacaaac cactgcactc atttttaatc cgtatccttc acctcggctt ctacttttaa
      121 aatttattta acaggaagcc tctcaggcta tttggaaagg aaaaagggga aataaattga
      181 agacaatttt acaggtccta cttcagctaa acctttcagg gccttcaatg agaagataat
      241 ctttctgtga ttatggccaa accctctcgt tgcttggcaa cacataatta aggaatatgt
      301 tttcagatcc gctttgcaag ctggccatta tcagatgaaa ttactggagc aacaaatgtc
      361 atcctcatgc aaatgagatg gtcgtaggca aaagaagaca gcacagaaat gctgctggct
      421 tcttgctgtg caccagtaat tctggtgaag ggaagggata atctaagatt tttagagaac
      481 agcgtttgca gttaaaacga gacacaggca aggagggctc ccaatccctg tgctctggag
      541 gtccttcagc ccagagcttt cgctgcgtcg gcatcgaccg ctcaatcaga catagcgcaa
      601 ataaatgaac atatttgtgt tccccacatt atgccaattt aaaaatactg cct
//
LOCUS       KCOD01001348             400 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 150545pyr ultra-conserved element
            locus uce-3968, sequence.
ACCESSION   KCOD01001348
VERSION     KCOD01001348.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 400)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 400)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..400
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="150545pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>400
                     /note="ultra-conserved element locus uce-3968"
BASE COUNT          133 a           82 c           82 g          103 t
ORIGIN      
        1 gtgactccca gtcccaactg agctgccaag gagagcactt gtcctcgaag acactcccat
       61 accgagttca aagccaggcc tgtgtgactg tgaggcacag cttaccacag agttcctggt
      121 aataaactct atttgaagac tctcagtgaa aagtgtgttc ctaatagagg ataacatttc
      181 atggtcatta tgcgatacac ttaactttaa aaggaacaaa aatgctgaga aagtaatttt
      241 ctgaaaaggg ctctcggatt tcattactat gggtcaagtg cctggggaga agaattaaag
      301 aaaaacacga acttgtgcac aaattaatta aagatatttc cactaataaa ttgtccccat
      361 atcccaaggc agagccttca gtttgcaaaa tgtggtaata
//
LOCUS       KCOD01001349             839 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 150653pyr ultra-conserved element
            locus uce-7168, sequence.
ACCESSION   KCOD01001349
VERSION     KCOD01001349.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 839)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 839)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..839
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="150653pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>839
                     /note="ultra-conserved element locus uce-7168"
BASE COUNT          222 a          195 c          220 g          202 t
ORIGIN      
        1 ctgacagccc aagattgtcc agtgggcaac atgcaacctg acagccaaag tcttcagaaa
       61 ctccttccgg gtgttggggc gggagggaag cgtggcagta cagccttgtc caccgtgcac
      121 tttttcagcc ctgtcctttc tcaataccca ggaaagatta actcctcttc gcacaccaga
      181 gaaagttatt atcattaatg aagaattaaa agagagtgat taataaaggg cccttatctg
      241 gccatgagga ggaggctgga caatggaagg gagaaaatga aaaacaataa atatgaagcg
      301 taaaaggagg cgagcactgc tcccacttgt tagatcgcag ctgcatctcc tgagggggga
      361 aggctccaaa ttgctaatta ctgcctctga aaagacctcg ctctgatatg ttttctgctg
      421 aaaggttccc attaatgaag cagcgatgat gccgtttccc tttgacttgc cttcaattcc
      481 ctccctgagc ttcctcccaa gccgggaaca atgaggccct gggagctggc ggctcccaca
      541 ggcctctcgg agactaggcc gggggcagcc gagtgagggg agccgagccg gctgtgaaat
      601 atggaggggg gagataaggc aaagacagag gaaagaggct cactcccagg agcccaggga
      661 aaatttgcag ttattatgaa ggagatgaga cagattaaaa gcccttgtgt tctgcgctgc
      721 ccttttattt agtggcttca tctctgagat gaaagaagtt ggaaatgact ttctccgcat
      781 tttgctgcaa gaagcttcac ggcacatttt ttgactttat tcctcccttt gtctcttgt
//
LOCUS       KCOD01001350             643 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 150758pyr ultra-conserved element
            locus uce-919, sequence.
ACCESSION   KCOD01001350
VERSION     KCOD01001350.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 643)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 643)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="150758pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>643
                     /note="ultra-conserved element locus uce-919"
BASE COUNT          176 a          126 c          145 g          196 t
ORIGIN      
        1 gcatgacaga actttttcat gacatatgag cagggagagg cagcaaatca cttgggttca
       61 gaaaacagaa tctcacctaa acaatagatg tttaagtaga aagtgttcca gctctttctg
      121 acaaagagcc tccagaggat tacaatgcag tcaatgttgc tttaattaaa tttaatgctg
      181 tgtgaaatgc actctgagaa actttgatga atgactgggg caattcatgt ggctcactaa
      241 agggcatcca gctcttgcag gggtgtcaag ccacgatgaa ttggttagta caggcatgtt
      301 tatagactgc ctaaggaacc ttgtatctgt gtggtaatgt cagagataat gttatgattc
      361 tatggacctt ggggggcttt ggtgacatgg ttaatgagat agcccaggga gtgtcccagt
      421 aggttacttg cagacctccc acatcaaaag gagcagcttt gccccttcag agcctgctgt
      481 cctctagatc tctcagctgg cccttgcttt ccataggact actttttttg gttcttagtc
      541 aacattaact ttggctgctg aaattcaaaa gttgttagtt tttaatttgg tttctctttg
      601 acccacctac acaatggctt tcaaagattt ttataggaac aac
//
LOCUS       KCOD01001351             672 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 150870pyr ultra-conserved element
            locus uce-4954, sequence.
ACCESSION   KCOD01001351
VERSION     KCOD01001351.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 672)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 672)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..672
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="150870pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>672
                     /note="ultra-conserved element locus uce-4954"
BASE COUNT          204 a          135 c          139 g          194 t
ORIGIN      
        1 ccataggaaa acttccccat aaattcacaa aacgttctgg cgcttggtat ggttttacaa
       61 cctgagaatt tattattcat gaaagaggtc ttttgaagta caatttctaa gtattgatgt
      121 tttatcttta agcagtgaac atgagcagag gcttaaaggc ccactgacaa tcactcagga
      181 atagctcaac tgctcatgtc taggcgaggt cttccccaca tagggaacct tttgtaaata
      241 ttagttacta gaatcacaac actaatacat gtagttaata attatcacaa tgtgccaaaa
      301 ctgcacagtt tgctccctga ttacaatatt aaattgctat tgagctgtgg tatttgcttc
      361 aggcaatact actgagaagc ctccaaagac tttggttggc ctccctgcac aagcttggga
      421 aatacatgcc tgcacagaaa gcagaggcag tgctggggtt tgccagaaaa caaacaaacc
      481 tcagacaata gaaggaaagt tttatcagag ctgaagtgtc ctttcacttg ggaactgtca
      541 tctcatgaaa ataaattgat tagggcttct gtggcagacc attaccaaga gtgaggtgat
      601 tcaagctgtg tgtggagcat cctgcccagc cagctctagc tttgttttag ttgcttttga
      661 tggcatctaa aa
//
LOCUS       KCOD01001352             521 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 150975pyr ultra-conserved element
            locus uce-3568, sequence.
ACCESSION   KCOD01001352
VERSION     KCOD01001352.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 521)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 521)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..521
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="150975pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>521
                     /note="ultra-conserved element locus uce-3568"
BASE COUNT          134 a          126 c           93 g          168 t
ORIGIN      
        1 cctttataat tttacggcac ataaagcgat gacagtgctc cgagcttttg catttctgag
       61 ttggttctgt taattggaag gagggttaag aatctgcaag gtcgtttcaa tctccatctg
      121 accttcagag taatcctcta tgccaacacc agagcatgtc attaaaatga ggtccatatc
      181 ccggcatccc tttattctct ccttgtgcac attaattgct cataagttga tttgatctcc
      241 ctattctgca agaagtaaat tgccctctta tttcgccatt ttcatcctgt tttcttaatt
      301 aggcccttaa aaatctctag ggcctcaggc aggcctcatc ctgggaataa attttgatct
      361 cctgataaag aaaccccgag ctggaacaat gtcgtgggct gccctccccg ctattctcct
      421 gacatgaaaa ggctatcact ctgtgttaat ataggaaata attcacactt caggcgttgt
      481 tctctattta gtgttcacac tcccctgata aatcaaatca g
//
LOCUS       KCOD01001353             787 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 151083pyr ultra-conserved element
            locus uce-6047, sequence.
ACCESSION   KCOD01001353
VERSION     KCOD01001353.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 787)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 787)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..787
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="151083pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>787
                     /note="ultra-conserved element locus uce-6047"
BASE COUNT          244 a          145 c          154 g          244 t
ORIGIN      
        1 caaaatgtat gtaggcactt ctgtttagtg taaatattta ccaagagtta aagactattt
       61 gcattaacat atatttataa aacagtgtgg aaaggggtga aaaacaaata tatgcagtag
      121 tacaatttta attttgtttt attattcctg ttcaatgtag ctcagccatt aaaagccctt
      181 atttgcatat attatgtcag gattcacaaa gagtcctctg ttttctgtcg tgtccttgca
      241 gcagtctgat ttctcttagt gtgctgccgt cactggtctg tgcaggagag atcagagccc
      301 taataataga tttttgacag ggagctcgcc tgctacctgc cctacacaaa tcctcactgt
      361 tcatgtttgc ttcatggcaa caaagcagac agaaggaaaa tgccaagtgc tgagtttgag
      421 gtacagccct gccatagctt gacatttcag cagaatagca gtttatgaga tgcataattt
      481 ttcatctggg actcagctgc cattttcata gaggcttgca gctcatcgac tgactgcaag
      541 tagggcaaag gtttacagga tagatcaagg tctacatcct tcctatagct atttaaaaat
      601 aagtattatt ctctagataa ggtcagagaa ctaagcattc aaattttatt ttctagccga
      661 tttcattccc acaaagaaaa cattttacgc agcacaggtg ccatttggag ttgattaaaa
      721 acgatcataa ttgatttcat tcaccaaatg attaaatgag tcctagagaa agaatgaagg
      781 aggagtc
//
LOCUS       KCOD01001354             389 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 151195pyr ultra-conserved element
            locus uce-5402, sequence.
ACCESSION   KCOD01001354
VERSION     KCOD01001354.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 389)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 389)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..389
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="151195pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>389
                     /note="ultra-conserved element locus uce-5402"
BASE COUNT          120 a           84 c           68 g          117 t
ORIGIN      
        1 ttgttcatga catgtcatga acaaattacc aaaatgtgtt gtctcctcag gtgtcagctt
       61 tcctctcttg cagtgactga tggttcccag tgttattaca gaaacagatt gatcttttta
      121 atgagctagt ttaatagact ccaaaatctc accgtggctg ctcatccgtg tcagaccata
      181 tgcaccaaga aaacattcag taaaacacga agctcggctg tcagattgct ctataaaacc
      241 tcacatatag tagacttaga tatgcagata aataaccaga aaaatggata tgcttctgaa
      301 attataaaaa atcacgaggc agctatggtt acatgctttg cctaatcctc tactgtactc
      361 tcctctacta gggtatgcag ttatccatg
//
LOCUS       KCOD01001355             401 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 151301pyr ultra-conserved element
            locus uce-4278, sequence.
ACCESSION   KCOD01001355
VERSION     KCOD01001355.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 401)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 401)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..401
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="151301pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>401
                     /note="ultra-conserved element locus uce-4278"
BASE COUNT          107 a           87 c          101 g          106 t
ORIGIN      
        1 ggttagacca atctggtgtt gttgggaatg gtgagaagtg ggaattgctc ttctccctga
       61 ccggagccaa gaccagtccc atcccatcga gaggaaggaa gaagaagaca gcgagatggc
      121 cgtaatttat actctcctgc ctctacttta tggctttctt aattcggctc ctgctactat
      181 taatgtagtt aatgttgaga ttatatctat tttctggcgt caggcagtga tttatccaag
      241 ccatttttcc ggagccggct cccacgctgt taaatcaagc gactgccaat taagtgctga
      301 ctggggaagt ggtaacagag atctaaccac aaattaatcc gggtttgtga ggccgaagcg
      361 ctgaaccaaa caaggggtcc actactgact taaagaggga a
//
LOCUS       KCOD01001356             618 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 151406pyr ultra-conserved element
            locus uce-5700, sequence.
ACCESSION   KCOD01001356
VERSION     KCOD01001356.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 618)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 618)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="151406pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>618
                     /note="ultra-conserved element locus uce-5700"
BASE COUNT          202 a          119 c          126 g          171 t
ORIGIN      
        1 caataacaac cataaagccc tccttgtgag ctaagttatg taaattgcag aatgccctta
       61 ttgtcagcag gtatattatt tcagaaaaga cagacaactg tgttaatctc ccttctgctt
      121 aatccctgtc tctccacaaa tcatcatgtc gacagtttaa acagatttag atgtgactga
      181 aatcaagaaa aggagatagt ctcaggatgc tgaggctgat gcagacctcc aagaggtaat
      241 tttgtttgtg gtagagagag aacacaggag agagagtaaa tctaacaaat ctaacaaagc
      301 agccttctgg cccagccctg aggatcaaat ccaattctac gaagatacgc attaagctct
      361 gtctatcaca gctttgccct tgaaaagaca aacagtcatg agattcacct tgttgtgctt
      421 gtctctggag agaagagaca gaagacattt aaggaatttg ctctgttgct catttcgaat
      481 gccttttatt gtttaatact tattacttta gagcagggga aataggtaac tctgttagtt
      541 taaccacttg ctgtccctta agtcagaagc aatcaccaga gtaataaaaa agaatcgaga
      601 aaatggtggt cagtggaa
//
LOCUS       KCOD01001357             729 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 151515pyr ultra-conserved element
            locus uce-7553, sequence.
ACCESSION   KCOD01001357
VERSION     KCOD01001357.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 729)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 729)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..729
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="151515pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>729
                     /note="ultra-conserved element locus uce-7553"
BASE COUNT          219 a          144 c          154 g          212 t
ORIGIN      
        1 ggaattggtt ttatttctag tctactgcat tgaagtgatt taaatcattt tcatgtgcca
       61 ctgcaaaaat gcaaaagcac attaccagaa ggaaatggtc agcaattttt gcaaagttgg
      121 cttgcaacag ctactacact atgtggggaa aacagttatc ctgtaataat aagactaatg
      181 aattcagaaa tccattgatt gaactggctc tgggtagatt atgtgcaggc ttgcttcaag
      241 gagaggaatt tatgaaatgt ttgccgcatc cagcaagcac tgctgctatt atacagctgc
      301 ctcctcagtg gtttgctttg atcctgtgga atgaaaggac aggaggatca gctcaggtct
      361 aaatgagatt acagctggtt cggcagctta tctggtctaa tgccaactag tgtggctttg
      421 cacgtcctaa ggggtttaca acagaaactg tttattgagt atcatcggtt tactcaacac
      481 aagcaggcta atccttccca gcctcagcat gttgtaggat tgtgtatgag ccaaaccaaa
      541 agctggtgca gccagggcct ccagagccct ttgtctcgct tcatattgaa aaaaataaaa
      601 ccaataaccg gccctattgt gagcaaaagg ttaatctgac ctaaaaatct tacaaaagca
      661 tcttttaacc ctagaaggga tggtagcctt tctctgattt tctagtttaa aaacagcttc
      721 aatatttaa
//
LOCUS       KCOD01001358             463 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 151626pyr ultra-conserved element
            locus uce-3964, sequence.
ACCESSION   KCOD01001358
VERSION     KCOD01001358.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 463)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 463)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..463
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="151626pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>463
                     /note="ultra-conserved element locus uce-3964"
BASE COUNT          129 a          112 c           92 g          130 t
ORIGIN      
        1 attaattagc atcattcagg gatgtggaat gccaagattc cactggtcac agccaaaaag
       61 gtacattatt ttaaaggcag catggacctc ggagtgactc acacagagaa acaaagatca
      121 gtgcctacct caaaatcatt tgctttattg tagtgcatgt tcagggccct gtacagctca
      181 cagtctctgg ttatagacag ctcctcagtg ctcgtgaccc cgtcgttgat ggcttgccgc
      241 gcatacttct ccatctgaat gtagtaaaac tcacggaaat tgctaaacca cttgatgagc
      301 tgagaggtaa tgcatctgtt gaactgttaa atttaaacag taagaaggat aagagcactg
      361 acattcctcc ccatttcttt caaaaagcat tctttcctcc ccttccccac ccccatgtct
      421 ctgtgcttct actggaagca gctggcaaat tatgttagtg tat
//
LOCUS       KCOD01001359             444 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 151730pyr ultra-conserved element
            locus uce-3681, sequence.
ACCESSION   KCOD01001359
VERSION     KCOD01001359.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 444)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 444)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="151730pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>444
                     /note="ultra-conserved element locus uce-3681"
BASE COUNT          131 a          101 c           77 g          135 t
ORIGIN      
        1 ctctcactct tagacacgtg gctcccccct cctatatccc cctactttgg ggataattta
       61 acatgttaca cactaacttt ccagtaatgg cactctggct ttttgaaatt ctgcttccct
      121 gttttatggc tgggcgtcta atggttatct cgcagccctg cctctggcaa tcatgtaagg
      181 aataaataga agctgacaca gtaatttact taaatcttct ccacactttt gcagcatttt
      241 cctccagagg atacccccga aacaacaatt atttgaaatg tcatgcgttc ctgcccctag
      301 gctaccgaca aatgaacatt aaatctatta acaacaaaaa aaattaaatg tttacttttc
      361 tgcgaaggta aaggagaagc tggagagagg gaaggatgtc tccaataaat ttcttctcaa
      421 taataaagag gtgtagttaa tgtt
//
LOCUS       KCOD01001360             646 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 151842pyr ultra-conserved element
            locus uce-6017, sequence.
ACCESSION   KCOD01001360
VERSION     KCOD01001360.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 646)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 646)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..646
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="151842pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>646
                     /note="ultra-conserved element locus uce-6017"
BASE COUNT          196 a          132 c          120 g          198 t
ORIGIN      
        1 cacaagtgtg tggcaatgtg atgcaaaaga gagacacaaa agtgacacca aaggtcactg
       61 gaatataaaa gggcataaag cgagctatca gtttgaacct attagaggca gtgaaatgca
      121 agagaaagtg gggaaattat attacagtgt acaaagtaat aataactgtg ccttcatgtc
      181 ttaataccct cttgtcccag cagtcctgac tttctaggca gcccacttct ccacattaac
      241 agtagtcatt tggagagcag caaacgtgcc attagaagca cttttacaag tgtatattca
      301 tccaccaatt agcttaatgt ggctgctttc tgcatatttt ctatccaggc ttgcacaaat
      361 cttattaata tttcccccta gcgctttgac agattacctt gtcattatgc atcctggagc
      421 cttttaaaca atatgggtaa actactgttt gcgaggttaa tgacaattat cccctaatta
      481 ctgcataagt cactcagtcc actttatctc ataggcaggg ttctgctctg tgtatctgcc
      541 attgtgtcac tgtaaatgaa tcttgtatag ctatgtttat ctgtcgttgc cttgtaaatt
      601 acactgacag aagaatgaac aaattactgt gtatcatcac ttaaat
//
LOCUS       KCOD01001361             766 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 151953pyr ultra-conserved element
            locus uce-1322, sequence.
ACCESSION   KCOD01001361
VERSION     KCOD01001361.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 766)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 766)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..766
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="151953pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>766
                     /note="ultra-conserved element locus uce-1322"
BASE COUNT          208 a          171 c          138 g          249 t
ORIGIN      
        1 ccatcacatt ggcttttact ctaggaggcc aactttacag aagtcccctc tccttgccac
       61 atggcttcac catcaacttc ccaaccctcc atcctccact ggcctgcatg tttctggcat
      121 agtacccacc ccaaaagcat cctgcccagt cagatgatgt atttgaagga cagatgaaac
      181 gagctagcca gtacagacaa acctccatca gaaaaagttg tgtgtctttc atgaggatgc
      241 tgttttgcat gttgctgtat tttttaatta ttgtaatgag gtgtgattgt ctattggtta
      301 cccacaatac ttcttgggga ctctcccccg gtaactcttg tcaacacttg ttaatctgac
      361 aaaaggctac aaattaagct ctgttaattt aatgttttct caccgagatc taaataccga
      421 aagaggccca aagcgcaact gaagtccttt gattcactgt actttatttt ggtataaatt
      481 tacattcatt attgttttcc tttggatgtg tagccctcaa ttagtgtgat ggctccatta
      541 aagcaagcga gacttcgcct ttaattatta caacaaaaca cctagtttca gcttggggag
      601 agggtctcta ttgacataag cagaggttat aaaatttaat tagccattcc tatcagattt
      661 atggcattca aattgttctg tgtttctttc ctttgatcct tgctgtacaa tccccaagat
      721 ttttgttctg atcaaatgag aataaagctt actgtgcaga gagaag
//
LOCUS       KCOD01001362             774 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 152060pyr ultra-conserved element
            locus uce-1005, sequence.
ACCESSION   KCOD01001362
VERSION     KCOD01001362.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 774)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 774)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..774
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="152060pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>774
                     /note="ultra-conserved element locus uce-1005"
BASE COUNT          255 a          161 c          129 g          229 t
ORIGIN      
        1 tttacatgat ttctagatag aggacatatc acttgaaaac agatttaggc aaatgtcata
       61 tgcaataaat atttattgtt agaactattt gtggtttcaa tgaggtcttc attagcaaac
      121 aaaggaaaaa atcaaggtat tttcatgttt atacagcaag aatgtctttt gctaaactgc
      181 attttgagct acaccagatc aattcaataa gagaaagccc aacagagaac agatgcaata
      241 taagagcaat aaagggaagt aaaaaaatta aaaatccttt gttctccctg cagtacatcc
      301 gtaaatctat tagtgttatt ttcctttctt ctcttttttg catcccaagc cagatctcaa
      361 gttctctgaa gcaatcctta atcaagctcc ccaaaggcct acgactgcat gcagcaattt
      421 ctcccctgct ctcagcacag atgtttcgag cacattccat tacacctaca tgccattaca
      481 gctaatggct tattctgatg aagaaagctg ctttctgctc agtgcagcaa aggggaaaat
      541 agcctcctgt acagttcgta cactgcaaca atgaaatgtg ggggcaggtg gtacaacaga
      601 actctctaat gttaattaca tactgtatta cccccaaatt tggctggtca ttaattatgc
      661 taatttacct tcctgaaaat tagcaccact catgtgaaca aaaattatct acagaatagt
      721 ggtttgtaaa cttaaacctt ttgaaccacc atacaggatc acagtggctg ccag
//
LOCUS       KCOD01001363             762 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 152167pyr ultra-conserved element
            locus uce-5251, sequence.
ACCESSION   KCOD01001363
VERSION     KCOD01001363.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 762)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 762)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..762
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="152167pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>762
                     /note="ultra-conserved element locus uce-5251"
BASE COUNT          194 a          166 c          217 g          185 t
ORIGIN      
        1 tttgtgttct gttttgaagg tcttgatttc ggaaggactg atgcagtttg ctcaagatcc
       61 aaagttcatt gaggtcacaa cccaggagct cgcagacgcc tgcgacatga cgatagaaga
      121 gatggaaaat gcagcagaca acattctcaa tggtaacagc aagcagagcc ccaatggcaa
      181 cctcttgcct tttgctaact gcagggaccc agggcaggac agtgcaggag aggaagagga
      241 agaggtgcag aacccggatt gtaggataag tcaggaggag ctcaaggaca gcaggattta
      301 tatcagcagc ctgtagttgc cagggctgga agcgatgctg gttttttatt tgtttcaatg
      361 ttcctaatgg gtttgtttca gaagtgcctc actgttctcg tgacctggag taaccggaac
      421 agcgttcttc attcatttct gttgggacga gtcgcagagt tgggtggtgt aagaaagctt
      481 ttcaggagcg gatataaccc cagcacgtgt ccatgaagga agagtagaag aggaggagag
      541 ccagctccct ctttttttca gtccctgcac aaggaacctc cggagcacga acctcagctt
      601 cctgtggatg gccctagccc tgcgccaaac gggtgtcttt caactttgct tgtttttgca
      661 catattctgt atgagcctca ccgtctccat aaagccaagg ccctttgatt cggaaggaga
      721 ggaagacttc tgctgtgacg gggaggagga agcaggagaa gc
//
LOCUS       KCOD01001364             347 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 152276pyr ultra-conserved element
            locus uce-6281, sequence.
ACCESSION   KCOD01001364
VERSION     KCOD01001364.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 347)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 347)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..347
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="152276pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>347
                     /note="ultra-conserved element locus uce-6281"
BASE COUNT          109 a           63 c           61 g          114 t
ORIGIN      
        1 aaaatctagc ctcctgcagg ggagctatta ttgccagaat gtactagcat tatcttgctt
       61 atgggggggc atattgttta tgcagtctat ttatcagtgt aggaatatat ctaccaatat
      121 agcaatatct ctgcagtaat ggcatacacg aataaaagag ttttcatgaa cacagagttc
      181 ctgcctgtag catgtacatc tgagatacta aaggattatt tacctatcat taagatatgg
      241 aatctagtcc agtttttctt gcagcagaaa tcatattaaa ctctctagct attatatcta
      301 acatccattg ggcacctttt cattctgggt aacctaatat aaatgaa
//
LOCUS       KCOD01001365             622 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 152383pyr ultra-conserved element
            locus uce-2687, sequence.
ACCESSION   KCOD01001365
VERSION     KCOD01001365.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 622)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 622)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="152383pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>622
                     /note="ultra-conserved element locus uce-2687"
BASE COUNT          200 a          116 c          128 g          178 t
ORIGIN      
        1 taaacatttt tgattttctt ttatgttcat cttaatcaaa ttaagtttca atttaaaaga
       61 caacctacaa catgctaaga aaagctgcat gaagcgtctg tcagagaatg gaatgtattg
      121 ctgttatgcc cacttttctg tgccatttgc tgcctctaca cagcatcgat ggttatgcac
      181 agcagaagct gcaagtcggg tgaacatgtt tatagaattt tggttgcatt gcacaaaaga
      241 aaacagctct cgggggacac agctgcacaa gcaaaaatat aaaggtaaag ggtaggtacc
      301 aagagagtca tgtttctcaa acacagacgc ctgtcagcct tgtcctgtgg agaggggtta
      361 aagcttttaa atgaattggt gtgattagtg caacttagaa aataaaatga atgtaaacca
      421 aaccaaaacc attatatttg tctataattg gaaagaaagg ttaagattgt tctacctcta
      481 gttccctcag aattcctgac tggccacagg tctctaaatc ctccagagcc tgagaccaga
      541 aattttcctc ctggtcagcc tcggtgttat catgggtacc tgtgaagcta gatttacaat
      601 gagaagttaa aaaaatgtgg ac
//
LOCUS       KCOD01001366             753 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 152492pyr ultra-conserved element
            locus uce-6222, sequence.
ACCESSION   KCOD01001366
VERSION     KCOD01001366.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 753)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 753)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="152492pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>753
                     /note="ultra-conserved element locus uce-6222"
BASE COUNT          252 a          146 c          134 g          221 t
ORIGIN      
        1 ctcttgggag aacaggatta tgagtagaaa ctgctcagaa tccctaaatc aaaaagtcat
       61 ttaaaaaaac aaacttaata taatcatatc agccatgcaa acaggaacat aatttttgaa
      121 ctgcatttta aatgcaaatg aaattactac agtgctgtgg catttccgtg aaacagtttc
      181 ttggcactag ttccaggctg aaattatcta attttgaccg gcgtttgtga cattacagca
      241 acaatgtgac gaaagcagga ttggctctgt tggcttctaa ttgacatctg cagttgctgg
      301 gagacaatgg catgtgctcc taatggagag tagctttcaa tcagttcagc aatcagaaaa
      361 taatcatagt tctcatactt gaacacaaag cacttactta atgttttcca acctgctaga
      421 gtctggtttc aaagtgtttg agtgcttcac cattttgcac aatgtgatca ccaggaagat
      481 aagattcagc tgtcaaaaca gataagaatg aaattaaact acttcaagta ataggctgaa
      541 taatgatgat gttatcagct aaacaaaaat cctgtagttt atttccaagt aagtagtgaa
      601 aattggtaac atggtctgca aatggtgatt gcaaataaga atattagttg aatttcccaa
      661 atgcaccaca tcatcatgaa ccaccatcac tcatgttcaa cacgtctaac tctgtcctcc
      721 agcatgttgt gctcatcacc tttacctgtc acc
//
LOCUS       KCOD01001367             828 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 152604pyr ultra-conserved element
            locus uce-2647, sequence.
ACCESSION   KCOD01001367
VERSION     KCOD01001367.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 828)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 828)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..828
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="152604pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>828
                     /note="ultra-conserved element locus uce-2647"
BASE COUNT          231 a          193 c          157 g          247 t
ORIGIN      
        1 ccttcagaaa caacccagag atgctgcttt tcactccttt aaacgaaccc agcagggtat
       61 atcagatgta cattgaggat taagttataa ttacaatcaa tatttttgcc atgccccatt
      121 ctccaaataa tatatatttc agtcagtgca cttcagggat ttatctctgt gaggcccatt
      181 tctgcccaaa tcagtgtgtc tttccctttg atattcccac agtgttcaca tataccctca
      241 aacatacaca gccctgggta atatgtctcc aatgtgatga aatcaatggg aacacagcct
      301 tttttgcctg acagtattgt cagggtgtat tatctggttt aggctgtggc ttcagttcat
      361 agcagtcgtc agttaaattt ccctttctga agctgagcaa agtgtggtaa tgtcacagcc
      421 acaggcgact gccgctcaca ggacggttta ccggtggagc ttagcctcct ggcttgtcac
      481 agtgtatata tctcagggtc ttcttttcct tcctactcag aggtttccaa gaatgttgcc
      541 tggagcagtc atgggatgca aaaaaagaga gatttttgtt ctgcacttag caacattacc
      601 acacttcaca ctcagtttct gataagggga aatttaactg actgctctga actagatata
      661 ccagataata cactctgaca gtgctgtgga taaaggctgg caaacctact aatttatatt
      721 tcattatccc tgcacttggc ttaatctgtt atctcttact aaacgttagc aagctcacaa
      781 agagctgcac tgaacagcag aaaatggaac cacaaacacc tcctgaac
//
LOCUS       KCOD01001368             797 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 152715pyr ultra-conserved element
            locus uce-971, sequence.
ACCESSION   KCOD01001368
VERSION     KCOD01001368.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 797)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 797)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..797
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="152715pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>797
                     /note="ultra-conserved element locus uce-971"
BASE COUNT          235 a          133 c          176 g          253 t
ORIGIN      
        1 ttgcacaaag agccccagtg ggcttttgat gaacaatgga tgccggattg ggaatgcaaa
       61 ctatcaggaa attattccca tccattattt tgatccttct attttaaaat tgaaaatgca
      121 acacaaaaat aacacggtgt ttgcagccga ttctgttgat tgtagggcat tgtggaagca
      181 tgtcagggtt tgctttcttc ccctcctttt agcagacaga ataggtgaag aggttgagct
      241 gcagatctca tttctcctgt tttgctgctt gtgaagtctg ccaacagaat ccaccttgac
      301 aaagtcaagg actctgcgtt taatgttgaa ctgagtgaat aaattatgca tgaaattgtg
      361 tcggagtctc tagtgtgctc tagaattgct ccttttgata tgaaaggtta attcagaaag
      421 gagtccaaaa tagctggaaa ttgtggggat aagtggatag tattcactgt tgtgagctgt
      481 tattactaga aattgcattc cctctctggc ttccctagag atttcgcttt gctggtgaat
      541 ataaactgta ctcaatagaa tagcatttag gagtaacaag agtgtatgtc cacacacagt
      601 aaaatattct aatggtgttt taaaaggaaa ctgtactttt tcatgtattc tgtgcacccc
      661 aaggatggaa ttacatttag gtcaagaaca aggcacagga aaggtaataa gttttgagta
      721 catctttatt acaaatatgg tgactgtatg atccatatca aaggaactgg gcagtcattg
      781 agtttgtatg tgcctta
//
LOCUS       KCOD01001369             441 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 152826pyr ultra-conserved element
            locus uce-7018, sequence.
ACCESSION   KCOD01001369
VERSION     KCOD01001369.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 441)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 441)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..441
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="152826pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>441
                     /note="ultra-conserved element locus uce-7018"
BASE COUNT          139 a           96 c           76 g          130 t
ORIGIN      
        1 tcaacttgac tggtgcttct tacctcactg cctccttcac acagagccag ggcccaatta
       61 tgtttccatt aaacttttga cagatttact taataacagt ctcagcactt ttattgagca
      121 tgcaagacta acaaaacttt ggcaatgcat aagtgtaaca cagtgacaag aagagagagc
      181 ttttacaatt aaatcttcta atactggctt cacagtgtgg aaattgtgct acatccacca
      241 aaagagggcc cagtctactc aaatgtttaa gtacttcacc ccaggaacaa actcctttgc
      301 gtttggattc agattactct tgacctgagg aagggaagaa cagaaatttt cagcttccat
      361 tttcaagctg aagacaatta aggcttatgg atttagagta acaatcaggt atcttacatt
      421 tatcagctct ataatcccta g
//
LOCUS       KCOD01001370             670 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 152939pyr ultra-conserved element
            locus uce-872, sequence.
ACCESSION   KCOD01001370
VERSION     KCOD01001370.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 670)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 670)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..670
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="152939pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>670
                     /note="ultra-conserved element locus uce-872"
BASE COUNT          244 a          115 c          131 g          180 t
ORIGIN      
        1 aacttggcaa aagaagcttt acatcaaaac ccagcaccag ctgtactaaa ctggtgctct
       61 ccattcagcc tgggaattac gggagtgcac tgcctggcca ttaactcacc ttccagaacg
      121 gttgggtagg gtactaaaag gtaaatatga gaaatacaat tggaattatg ataaacagaa
      181 ataaaagggg gctaaaatca gaaaggtttt gtgaaaagaa aaacggcttg caataaagct
      241 gaaaacagca gtgctccgag gcaatttaga ctgcaaaaca caaaccatta agtttgtgca
      301 ttatctttta atttaatctt gaatgattta taatccatca cgcaaggctt caaccatatc
      361 caattattct ctgctgcttg attgacaaga aaggtgattt attaagctaa taaaaagtga
      421 tgtgagctga gctcatataa aaaataacca gctggacaaa gactttaaag agacatcgac
      481 ctttttttcc catagagaag gttttgtcac ttttaccaat tcagcagtaa tcaagcggca
      541 acttaggtaa gagcgcttgg atataaaaat gtaaatgtgg ataacaatta ttaactcaga
      601 agaaggtatt ttttcacatt aacaggaacc acgaaggaaa tgcaaatgag ttagtttatt
      661 tgcagtgtac
//
LOCUS       KCOD01001371             617 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 153041pyr ultra-conserved element
            locus uce-5721, sequence.
ACCESSION   KCOD01001371
VERSION     KCOD01001371.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 617)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 617)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="153041pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>617
                     /note="ultra-conserved element locus uce-5721"
BASE COUNT          203 a          114 c          150 g          150 t
ORIGIN      
        1 taggagacaa gcaaaactta ttttgcaaag taaaaaataa aaaaaaagtg ggccaaaagg
       61 aaaggaaggg ggctccaaaa ggctgtaaaa ttgtgcaggt aagccctgtg ctgcatgctg
      121 ttttcaatct gctgtgtgcc agttggaggc tctgagagag cgggagagaa agagaaagga
      181 taatgctgag aaatgataga gtggctgtga cctccaagct cagcctggaa atccaagaca
      241 ttgatttcac ttagcattcc tgctgagaaa tccggcagag ttcagttgta ataaaagaac
      301 aagattctgt tctaatggta atggcgtatg acagacatat cactttgtct gtcctcagca
      361 ccagagagat gggaattgga gaaaggtcac ctgacctgcc tgagctgttg tgcaagtgct
      421 gttctgagct ttgcacccca gcctggaagc acaattattt ataatactaa acaataaaga
      481 aacctttatc tacagtaatt agaataaagc ttacacagta gtgcagtggc ctggctcaga
      541 aaacacactg gcaaatccat cacaatggca gaaactgaag cttatgtgtt ggaagtaaac
      601 accttcgttt gtgtctg
//
LOCUS       KCOD01001372             725 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 153149pyr ultra-conserved element
            locus uce-691, sequence.
ACCESSION   KCOD01001372
VERSION     KCOD01001372.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 725)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 725)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..725
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="153149pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>725
                     /note="ultra-conserved element locus uce-691"
BASE COUNT          260 a          130 c          121 g          214 t
ORIGIN      
        1 attaataagt gtggtgaaat ggtacagcag acaacacgag agacatctgc tttttatagt
       61 aattgggata taaacaccta aaatcaggat tttatactaa aagggcaagc taaccttact
      121 aatggtgatt actcactgta taatagaaaa ggaaataaaa gcttttttat aaaatgtatc
      181 aaatcctaag agtgctgtta aactcattaa agaaaaaatg aagttagaga aactggtctt
      241 attttttttc actcccagta gagttcattt ctacttcaac aactaagcca aggtcacatt
      301 taactcactt caatttcacc cagtgcacaa gctaatgtca atagtacagc tgccatgcag
      361 agctaaagac tgatggttag acaaagccat ttacacaagg ctgggtcttt catcttctct
      421 cagctagtga cataagaaag cactgaggtt attctcaact agagactaaa actggcatat
      481 tagaaaaaat gttattctcc ttagctgtca cacaaaggat ctgaagaaat gtagaaatgt
      541 ttttttcctt ggtcatctag ggagatcaca aagtgactct aatagccttc actctgaaat
      601 tttcacatgg tttaagtgat tgccaagtct gatattttcc atttacactt cattgccatc
      661 agaaaaagaa aaaaatcaat atacctacct actcaagtgt gtcacaggat gagcttataa
      721 aagaa
//
LOCUS       KCOD01001373             454 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 153257pyr ultra-conserved element
            locus uce-3575, sequence.
ACCESSION   KCOD01001373
VERSION     KCOD01001373.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 454)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 454)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="153257pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>454
                     /note="ultra-conserved element locus uce-3575"
BASE COUNT          149 a           86 c           69 g          150 t
ORIGIN      
        1 gcataaatat tcacatgagc aaagatgctg tcaaactcct gacttgacat gtaaaatgat
       61 aacaaagata ccccaaattt gggacctggc tgcatagtca gggtaaagaa atgcacctgg
      121 aagattgtgt ttggattcag ggaattcaaa tgaaagctcc tcaaactcga cagtttaatt
      181 tacttctctt aagctcctta ataccaaact tatcagttct ctctgttagg cattaacttg
      241 ttaaatgagt cttaattata cataagcaga tggagatttg aattaaaatt accttacact
      301 cgagtggctt tagttcatta taacatatct tcctcttaat catttaggca gtctcatcat
      361 ctttcatata taaagttatt aaagtattcc aatttccata tttcttcagc tacatccact
      421 attaaatggc acgtaataca cattagttgg tgac
//
LOCUS       KCOD01001374             541 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 153363pyr ultra-conserved element
            locus uce-7768, sequence.
ACCESSION   KCOD01001374
VERSION     KCOD01001374.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 541)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 541)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..541
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="153363pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>541
                     /note="ultra-conserved element locus uce-7768"
BASE COUNT          153 a          125 c          104 g          159 t
ORIGIN      
        1 atttttggac tgacctttca aaattagtat cacttgctag tgagattatg tgtgtgaatg
       61 ttgtgtttgc ccctaccatt ttccatatgc tctgcctcac caacactgcc atccggcgta
      121 gtcctttcgt agttgtcctc tgggagtgga agggcaccca gtcttggccc tgatgaactc
      181 ttactgcttg gtgtttctga ctcctccaga ccgctgtcat agcaactctg caatgaccct
      241 tgatgcgggt cctgaggctg actcacaaca gaaaacgtca ctctacgaaa cggctgcaag
      301 agaaaagatt ctgaatgtca ctggaaagtt cagtctttga acaactgatt ctcaaaacat
      361 gacttaaaca aactaataac atttaccagt taaacaattt tgtctacatt aaagcaaaca
      421 aaaagtacag ttcttacaca aaaggccact ggacagaata tgcatggaat tttactgttg
      481 gtccagaacc ttcacgcagt ttatcatagt ctcctttcaa atggctatat gaaagctggt
      541 t
//
LOCUS       KCOD01001375             533 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 153472pyr ultra-conserved element
            locus uce-4010, sequence.
ACCESSION   KCOD01001375
VERSION     KCOD01001375.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 533)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 533)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..533
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="153472pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>533
                     /note="ultra-conserved element locus uce-4010"
BASE COUNT          180 a           83 c           99 g          171 t
ORIGIN      
        1 cacaaactgt tccatttatg tgataaactt ctattttttt taatgactag ttataaaggc
       61 ttgtacagat atgcatctgt aagcaaactg ggaataggtt agagaacaca attccctggt
      121 gtaaaaagca aggtttagca gtaatgcttt taatctggac ttgtagagga ttcgggagca
      181 tccatagatc tgcttcagta attaccatac cccaagtggc actggaagag acatttgcct
      241 aaaaacttga tgtcttcatt acactgttta cattttaatt agaaacatga aaattagtga
      301 ttcatatgga caactatagt ttaagtgggt ttgctcaccc tccaataaat cagaaaaaaa
      361 aggcaacccc acaacctgca tctgcaagca gcaaacttac agttgtaata aacagtttac
      421 taggaatcat tcatgggaat aatgtgttgg tattagaagc tggtttttgt attttatcag
      481 agaggaaatt tctatgtaaa ttagagattg ttattttaaa ggtaatgcta att
//
LOCUS       KCOD01001376             631 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 153579pyr ultra-conserved element
            locus uce-5824, sequence.
ACCESSION   KCOD01001376
VERSION     KCOD01001376.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 631)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 631)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..631
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="153579pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>631
                     /note="ultra-conserved element locus uce-5824"
BASE COUNT          209 a          119 c          110 g          193 t
ORIGIN      
        1 agaaggctga ttttatggag aagacaactg tgtaatcatt cagctaaggg tcagattctt
       61 cctgaacaga cacaaattca cctcccaatg atgctcttta atggaagtaa acagtgttgg
      121 caatgttgta cacacaagca acaaacagtt tcagaggctt caagaaatga cacagaaggc
      181 ctttgagctc agtcctcaat gcacttttgt ttgtgaaaac aaaaagaaaa gaaagaagaa
      241 cctcacttgg ggagaactta ccttgccaaa ctgttcaaag tattgcttca cgtcttccac
      301 tactgtatta gctgataatc cacctacaaa tattttcttt gttcttgtga ccatctgtaa
      361 gaaattacaa gacaagcata tggtttaacc agattatttc aaacaatacg tggaaaaaag
      421 aaatattctt tagatcccat ccctaaccca gataatgaga atacttcaag caatttcaat
      481 tcgatttgat tagatacttc tttctctgtc ttgttttgtt tttatttgag agatggctga
      541 gtaaaggctc tcaataacaa ctgtagcccc cggatatttt aaatgatttt tattgtgctt
      601 ctcaatgcaa atataagtga aaacggggtc t
//
LOCUS       KCOD01001377             791 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 153691pyr ultra-conserved element
            locus uce-3085, sequence.
ACCESSION   KCOD01001377
VERSION     KCOD01001377.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 791)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 791)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..791
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="153691pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>791
                     /note="ultra-conserved element locus uce-3085"
BASE COUNT          260 a          135 c          131 g          265 t
ORIGIN      
        1 taggaagaca cagcaaagga tcatatcttt tatatgtctt ctacaattgc atatgacaaa
       61 ctttgcattt taaaattgca gcttcaaaga tcaccattag aaattaaacc aactctacat
      121 acactgaaaa tctgggtcat cccatatacc aagtgtgagt tatttacaaa cttgaggaag
      181 aaactatgaa tgagcacttc ctcttctcac ccagggccta tagcttctct gctgtcgcaa
      241 gattgtagat aagtttggta ttcaggttca ctgtttgacc cattaaactg gtattgaggt
      301 ataatttgtg tgttttccca gtacggttgt acatagaatg gggttcattt ccacaagttt
      361 gaataaattt atccagttca gtgaacctgt tgttaagctt agcaaaactc agtaggtggc
      421 tttaaagtcc tgtaattagc ccattacata aaatctgtac tttagatttt tgcacattgg
      481 ttaataagta taacgtgctt cgtatatata aataacatta cattaaatga tgcaacataa
      541 aggaattaaa ggccaaagta gttaaataaa atacttgaag gggatctcaa attagcatgt
      601 ttaattccaa ctcattgaac aggaaaaggc tttagcctta ctgtaccagt tctatacaat
      661 gtgcagaata gcagatattt agtcttcatt ttacataagg tcgctgtcat ctctgacctc
      721 tgtgtgactt tggaaaaatg ttctaatttt tcttttaaaa tctaatcatt acaatgtcta
      781 aatatagtaa t
//
LOCUS       KCOD01001378             641 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 153796pyr ultra-conserved element
            locus uce-2018, sequence.
ACCESSION   KCOD01001378
VERSION     KCOD01001378.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 641)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 641)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..641
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="153796pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>641
                     /note="ultra-conserved element locus uce-2018"
BASE COUNT          198 a          139 c          115 g          189 t
ORIGIN      
        1 tatttaaggg ccgatttgaa gattcctacc atgtggtctt tatttttaca ttttcagccc
       61 attttcttcc cagcccatct caggaattgg gcagtcagca agagccagag agtgctggca
      121 tgtatcatta cattctcaag atggcatatt tactgctatt gccagcaggg tcgtgcttct
      181 gtcctagtaa atgtagtgga gtatgaaaaa ggcaattaca tctcactggg tgacctttta
      241 acagccatga ctacctccta tctatacata attattatag gtgatgattt ccaagtatta
      301 caatctccta cagcctcctt taattcacat cacatttagg cacgtttgtc accagtgcta
      361 gaaattttaa cccccgaaaa ctgaaaaaat agaagaggaa aagtgatagc aatggatgtc
      421 aagctctcaa gtcatcctaa taaaaacaca gcaaataaga tgtcgccctg tttgtattca
      481 ttatcagttc ttacatgctc cgactcttgc attaaacatt agacagcctc tgatgcctgc
      541 ttaacagttt aattccctcc tcagtattca ggctgtcata ataaaatcag tgaagcacac
      601 aaagtcaaat aagagcaaga ggaggcattg aacatgtagc a
//
LOCUS       KCOD01001379             466 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 153902pyr ultra-conserved element
            locus uce-2699, sequence.
ACCESSION   KCOD01001379
VERSION     KCOD01001379.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 466)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 466)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..466
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="153902pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>466
                     /note="ultra-conserved element locus uce-2699"
BASE COUNT          143 a           76 c           96 g          151 t
ORIGIN      
        1 aattccttgg cgtattgcag gagcatgcag tacagatgta agggaaagct aggtgtcagg
       61 gatcctgttg gtgtgattga cacataaagc aaaatttttt gccattctga tgtatgcttt
      121 cttgtggata tctctgaggc aaactattgg agtaaaccct ttgtcatttg gtgggttttt
      181 attttaatga aagcaatcgg tcttgtgtgc aaataccagc ctttgctgtt tgatatgcgc
      241 agaaatccaa tcagatgctt aattagatct taacaccaat tccaaacagc tggctaattc
      301 ccttgtttct gattaaagag attacaaaaa taaaatttaa cattgcattt acatacagct
      361 ctaaaaggaa acacttaccc ataagtttta gtcatttagg aaattcatgt ctgctcaatg
      421 ttagggatca aagattttag catgatgaat tgcagagtgg caagag
//
LOCUS       KCOD01001380             612 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 154009pyr ultra-conserved element
            locus uce-6766, sequence.
ACCESSION   KCOD01001380
VERSION     KCOD01001380.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 612)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 612)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="154009pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>612
                     /note="ultra-conserved element locus uce-6766"
BASE COUNT          191 a          105 c           96 g          220 t
ORIGIN      
        1 ggccacaact cagctgcaca gtagtatctt tacatctgtg ccagctaggg ttattactga
       61 gttttataac ttctgctata aataaagcct tgtcatctaa gcattcaatt taaatacctc
      121 tcagtttatt tttgaacact ggaagttaat aataaatatc atctttgttt tctaattttt
      181 ttactgagtt gatttaaatg ctcttgacag ctccaatcca atcctccatc caagctgaca
      241 agcatgacat gcatctctgc atacaagctc tcaattatgc ataatccaat gttttctagg
      301 gttttaattg aatcactagt ctcaaacttg ttatttttaa tttacaacat ttgatttctg
      361 acactggccc ctctatgtca taaattatgc aggcaagagc cttagttgtg tgggtgatta
      421 aaaaaaacta attaggcatg attaaaaaaa aataaaacag agacctctta aatatgtgca
      481 tgttaccatg taagagaggc ttatttcact ggaaatgcct gggtgatttt tttttttaag
      541 agattatgtt cagttcagta caatttgatt gattttgaca gaaatgaaag aaaatgtagg
      601 attttttctt cc
//
LOCUS       KCOD01001381             769 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 154117pyr ultra-conserved element
            locus uce-2860, sequence.
ACCESSION   KCOD01001381
VERSION     KCOD01001381.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 769)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 769)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..769
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="154117pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>769
                     /note="ultra-conserved element locus uce-2860"
BASE COUNT          220 a          164 c          132 g          253 t
ORIGIN      
        1 aggttccatt ctttgtagtt taggtaatgg atttaccata tgtttatgct ttaaggactt
       61 gtgtaagact gctaacacct attcctccac ctcctgtctc aggggttaag accttggtat
      121 gttgccagtt tactgctgtg gtcccttccc cttgtataat tgcagtcctt cccagagtga
      181 aggaaattcc ctgagctttt gctctaacta gccacaatgt ttcactacaa aaaggcactt
      241 ctttaaaagt aataaaactt tcacattatt aactttttcc cttttaaaag aggctgaaaa
      301 atgccgttgt accacattaa agacgtttac ataagactca ccattggcta atgagccttg
      361 ttgtacaatc taccacatgc aactgccttc aagtgctgct tttaacttaa ccttgatgta
      421 gtgccaggaa tgtgcaaagg actttgatgg tgggggcagt cccctccctg ccctttccat
      481 attgattctc taacatttaa attttttaat agagcagcta ctttatatcc tgtaaaaatc
      541 atctgcccta cagaaataag caaaagatca attgtttgta gtagaaatga taagagattg
      601 tggatacttt gtacttgtgc agtgactttc ttcctgcaga tacagagaac ttcataagca
      661 tcctcacaac tcccctgtga agaaagtgtc ataatctctg ctttatcatt aatttcagtg
      721 acttcccaga agatgacaca atatcaacag gatctgaaga atttttact
//
LOCUS       KCOD01001382             674 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 154226pyr ultra-conserved element
            locus uce-1718, sequence.
ACCESSION   KCOD01001382
VERSION     KCOD01001382.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 674)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="154226pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>674
                     /note="ultra-conserved element locus uce-1718"
BASE COUNT          240 a          124 c          119 g          191 t
ORIGIN      
        1 accaaaatag ccaatagatc atttaggaaa aaagagcaaa agattttttt atgtgtgtct
       61 gtccttgtat aattctattc tcactgtgaa atcatccata cacaaaacac aaggacaatt
      121 tttttttttt tttagaagaa ccacagggta ggttacagtc agaaacggcc tctcagtggt
      181 gtgttaaaaa ggatggtctt ttcaccaaat catttcacag aggcaaaaca gacaaacaca
      241 aagagttgag actttttctc ctacattaaa tagagtaact gataaggtca gacatatgat
      301 acctaaagac atgaatctgt gaactcttga agtcaaagga cttctctgtg caaaggaaca
      361 atctttcaaa ggaaatagat catagaactc cactgaatcc cctttaaact ttatgaagca
      421 ggaggagaaa aagctctaag tagggaagct tgacagaaga gccttgaact attttctgaa
      481 ggaaagatga gaccctccct aggctgccac aaaacatctt tttttttcta aaggctcttc
      541 tgaactttga tatgtgccaa gacaccgcta ttgaaagctg tataattatg tgctatagcc
      601 actgtagaaa atgctttgtt caccacaaca aagaacaata agcaaagtaa agtgacatta
      661 cactgtatct tttt
//
LOCUS       KCOD01001383             491 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 154333pyr ultra-conserved element
            locus uce-5007, sequence.
ACCESSION   KCOD01001383
VERSION     KCOD01001383.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 491)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 491)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="154333pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>491
                     /note="ultra-conserved element locus uce-5007"
BASE COUNT          148 a           91 c           93 g          159 t
ORIGIN      
        1 aaaaatgaag tggcctttaa aacacaactt gctctgggtt gttgctcggt atgaaattaa
       61 ggagttcact ttccaccacc tcttttctgt ttctaaaaac tgtcacttgt taccaaccat
      121 cccataactg tgtttccaac aaagattaca gtgatatttc tgtccagcta catgtcctgc
      181 agggctgttc tgcagtcttc cgatcagtaa aaatgtaata acattttcac atagtcaata
      241 tttaattctg taaatgcaac tggtagttgt aatctaggtt attaaccaca cagtgattta
      301 tgagggaggg cagacagtgg aggggtgcag agcactagga aggtcctctg gtgacaataa
      361 aaaagttata aatttcatag ctctgcctga gaaatgtatt tatatcccat attaagaata
      421 gctttttata aattttaatg atccatgtta ttaatggtgc tgtcatcatt actgcctgtg
      481 caagactgca g
//
LOCUS       KCOD01001384             509 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 154440pyr ultra-conserved element
            locus uce-7122, sequence.
ACCESSION   KCOD01001384
VERSION     KCOD01001384.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 509)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 509)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..509
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="154440pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>509
                     /note="ultra-conserved element locus uce-7122"
BASE COUNT          154 a           94 c           90 g          171 t
ORIGIN      
        1 acaaccgtac tgctttgagg tttctttcac attaagctac atttaatatt catttcactt
       61 ttttttctat taattaaaag taaaccgtgt attgtatggt acattatccc tctaacagcc
      121 ccatgtggag atcatgaagt ggaagactaa tggtgtagac tttagcattt agttttaacc
      181 aggataattt acatatctgt gagaagagtc cgaggcatgt gtaaataagc agaactcgga
      241 gatatcagac ccttgctcag tttgctctgg actggagagc cacatttatt ccatcactca
      301 gctaatttaa tgagacttta tccagcatcc atttctgcag aagacacaaa acttattatt
      361 aaggagaggc atgtggcagt aagaaaaatg tgtttgtttg cttttttatt ctattacccc
      421 caagtagcaa aggtgatccc attcactgtt cattaaagtt tacctttata attagcccga
      481 tatcaagagc tttatgctga gatttcaaa
//
LOCUS       KCOD01001385             322 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 154546pyr ultra-conserved element
            locus uce-3915, sequence.
ACCESSION   KCOD01001385
VERSION     KCOD01001385.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 322)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 322)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..322
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="154546pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>322
                     /note="ultra-conserved element locus uce-3915"
BASE COUNT           95 a           52 c           62 g          113 t
ORIGIN      
        1 tttttgacat tgcttattgg aatgttcttt aaagatatta ttagctgcca atatccccca
       61 tgggtttgtt ttttaatgta tctatgcagt gctacagtat gctgtttctg ctggtgatat
      121 gttgctaaga gatttaataa tgggtaaaca aacacaacat gtggtaatcc atttcaaatt
      181 aaaagtttat taaatgctag cttgatgact ttctggctat ttacaattaa aggaacgaac
      241 cttagagaac tggagatcac gtggtgaaaa tcccaacttc aacatttcca acaggtgttt
      301 atgatctgtg gcaagctgtc gc
//
LOCUS       KCOD01001386             636 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 154654pyr ultra-conserved element
            locus uce-323, sequence.
ACCESSION   KCOD01001386
VERSION     KCOD01001386.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 636)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 636)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..636
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="154654pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>636
                     /note="ultra-conserved element locus uce-323"
BASE COUNT          192 a          116 c          111 g          217 t
ORIGIN      
        1 tcagaagtag agatttgcct tagcatcttc gtccattcaa atataaaatt aaaatttcta
       61 attaatgtta tcctttggtg ccaagaattt tcaaacagtt gaatatcaca atatagttga
      121 tgcactccca tgttatcaaa taaatgctca aggtacagct tataatgttg aaaaatagaa
      181 aaataaattg accttgatga agtgtgtctt cttttgtctg ttcccaggaa agtttatttc
      241 aggtatttct actgctgaaa tgattagagt taacagcttt ttccctccat tttattttac
      301 agggtctctt catcttcctg atatatgggg tgtacaacac agaggtaagt ctgcttggag
      361 tatctcaagg ctgacagagt gaatgagaga aatgacaggt ttcttatctt gataactgag
      421 ggacaaagtt ggctttccat atgagtgtcc tactgccctt catgcttgga ctggcttata
      481 tgcatcccag cttaccatta aacacagaca ccctgaataa agggacagac tcatttctca
      541 taggcattga ctaatatttt actgcttttt ttgaattcct ggtctaacac ttagctaaac
      601 ctgacagtcc tgtaatctaa agtacatttt gaaatt
//
LOCUS       KCOD01001387             482 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 154764pyr ultra-conserved element
            locus uce-7978, sequence.
ACCESSION   KCOD01001387
VERSION     KCOD01001387.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 482)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 482)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..482
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="154764pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>482
                     /note="ultra-conserved element locus uce-7978"
BASE COUNT          139 a          123 c          113 g          107 t
ORIGIN      
        1 gatctggttg taatccagtt gcctgttaaa cagattagga aggcatttgt aaggggctgg
       61 caaggagagg tgtaagggaa gcctcccgaa ggacgcgaac agaaaggctc tggccatccc
      121 tgctgcccgc tcagctggcc tgcacgctgc cacagaaatc cctttttgtt ctcaactgtc
      181 tgcgcaaaac agcagcactg ggaaagctcc agtaaataat aactgcacct tatattaaat
      241 gccaaaggaa tgcaatttca ttacatcaag aaaagctatc cattaaaagc tctcagcgtc
      301 atcttgctga aacaatttca ttaaggtaaa ggacggtaaa tcacttaatg tcacacgcat
      361 cccctcggtg acctaacaga atccatttat cagagcagcc cagctgcatg ttaattccac
      421 ccgccgcggc agagaccagg gacagacacg agttttaggg gtctccccat gcctggagcg
      481 gg
//
LOCUS       KCOD01001388             718 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 154872pyr ultra-conserved element
            locus uce-1835, sequence.
ACCESSION   KCOD01001388
VERSION     KCOD01001388.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 718)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="154872pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>718
                     /note="ultra-conserved element locus uce-1835"
BASE COUNT          219 a          126 c          157 g          216 t
ORIGIN      
        1 agtagaaatg gcatgttaaa tagtgcttta tttggattac ctttcttttc atggcacttt
       61 gttacagcag cttttatgta cttagaaata aaataaattt caaaataact gccagctagt
      121 aaaaaactgc aaatgttccc tgtattttaa taaacaaata aggacatttg gcaaaattgt
      181 aaagtttatg aaatgttttt ggtagtgagc atgatatttg gttgtttagg taagtgcctt
      241 actaagtgtt tgtggaaagg aaaaatgcaa cttacaagtg atcttcttgt ttgttctctt
      301 taacagaaag ggttcaaaga caccagtcag tatgttgtag gagaattggc agcactagag
      361 aatgagcaaa agcaaattga cacccgtgcc gcgctggtgg agaagcgcct tcgctatctc
      421 atggacacag gtacggtgcc caattacact gtaaacagtt ttggcaaatt gagcgttcac
      481 aaactcttat agagttttgg aagtgtgaat ctttgaagcc tgaatgttca gcaaaactgc
      541 cttgaaaata aaaaggctgc gatttgcagc cacctctctg ggccctggtg ataagagtgc
      601 cttcatggga agtgataact tgccctgata ccgtgtgagc cagcactatt gaacagtgtg
      661 ctcatccatg cagagttgga atacacatct gtgcctcatt gatatgccac tgcttaaa
//
LOCUS       KCOD01001389             694 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 154985pyr ultra-conserved element
            locus uce-5062, sequence.
ACCESSION   KCOD01001389
VERSION     KCOD01001389.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 694)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 694)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..694
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="154985pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>694
                     /note="ultra-conserved element locus uce-5062"
BASE COUNT          188 a          136 c          134 g          236 t
ORIGIN      
        1 ccccaaggta aaatactcga aattgaaaat gcagctgggg ttttagtttt gaaaccagtt
       61 ctgattgtta cctccgtcac taactcttct ctttccagat gtttcatgaa tcacactttc
      121 tgcatatgtg ggctgcccta tacaccctta ttgttgcaag ctatcccagt aaagacttgc
      181 agcaatgcca tatcccccct gtgaacacag gttatttcaa gcttttgtca gtggcaacca
      241 ctcttatgca gcaactggtt ttggagtgct ccctgatgtc agtaccacct ggatgtggac
      301 ctttgctacc tgtaataata ccagtggcct catttgctgt atcattacaa tttggcttct
      361 tatgttaata agtttgaaaa agaaagctgg tgttctagaa gttgcccttc actggttgtg
      421 taaataaaaa tgtagaatga cacttctgac tgaagttagt gtggttttca taactgtgca
      481 ctacaacaaa gctgtaatca cagttaaatt agaatgtaat cccaggacaa ttttaagcaa
      541 atagcccaca gtactgcctg tgaaatagtg aaggagggca tttctgtatt ccatgacggg
      601 ggttaagaat gggtttatat gatttctcat ttttgtagtt tttatttatt ctatcagtct
      661 ttaacaaatg tttattgctg caatttttca gtgt
//
LOCUS       KCOD01001390             433 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 155094pyr ultra-conserved element
            locus uce-7318, sequence.
ACCESSION   KCOD01001390
VERSION     KCOD01001390.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 433)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 433)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..433
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="155094pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>433
                     /note="ultra-conserved element locus uce-7318"
BASE COUNT          157 a           83 c           76 g          117 t
ORIGIN      
        1 aatctttgct aatcgaatac cagaaatgtg tatttcaaag atcaaaattc ataaactcac
       61 aagcaaagca tagaggagat tctgacaaat acagatgtaa ttgtgtgggt ttctaagatg
      121 tgattagcaa atcaactaag taacagtcaa aatttgatac gcagcacaga tttgaatatg
      181 tttatgcaaa gctaatctgt caagtgtaat aaagcagctt gaataaaatt taagctgaaa
      241 atccactgaa gctccccatt tcagggagga aaagctatta aaaggaaatg aaggtcaccc
      301 tcccagttta tttcacctaa ttgactgcca atagcttacc acaggcaaac cgactgcaga
      361 tctgcaattg agaaactgat gaaaggagca ttttcaagct gaggctcatt cttttaatcc
      421 tccctcactc cta
//
LOCUS       KCOD01001391             781 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 155205pyr ultra-conserved element
            locus uce-6866, sequence.
ACCESSION   KCOD01001391
VERSION     KCOD01001391.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 781)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 781)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..781
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="155205pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>781
                     /note="ultra-conserved element locus uce-6866"
BASE COUNT          234 a          167 c          132 g          248 t
ORIGIN      
        1 ataaggatgg atccaaaatc taatgacatg catgaaaatc cattttggat cccccagcag
       61 aactctgcat tatgtaacca gcattttctg agtatcttct attgtttgac aaccctgatt
      121 tcacactgaa cttggagctt gtttctgttt ctgtatagaa actttaaatc atatcccttc
      181 gtgaacacac acataccatc gaggatattg tcttattaaa gagtttaagc ctaaaggtgt
      241 atgcctattt ttaaaagaaa ttttctgatt gtagataact gctcaatttg atttagtgtc
      301 caatgatagt gatggggttg ataactgagc attcatcggt aattcatctt gtgctagtag
      361 aaatttacag caaagcagtg ctttcccaac actgacaagt cctattaatc ttcttcagac
      421 acatttcaat aggtgtctcc atctgtgccc aacatctaaa cactctggca tcactgggga
      481 cttggagaca ccttcatttc aggttacact agtgaaaatg tgatactaga ttgtactcta
      541 tttttaacct aattctctct tttcattcaa ttagcctttc ttgcctgcat ttttctactc
      601 atgtgtaaca tccttttccc aggaatagct taaaaatgag atttagttac ttaaagagac
      661 agaatctgcc aggccaagag ataaaagcag aataataaag ctcagggaca cagtgcggag
      721 accgaatcgc cagtcaccaa acacgtcctg agcagcattc tcacgatatt cccctcctga
      781 t
//
LOCUS       KCOD01001392             575 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 155315pyr ultra-conserved element
            locus uce-1061, sequence.
ACCESSION   KCOD01001392
VERSION     KCOD01001392.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 575)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 575)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..575
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="155315pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>575
                     /note="ultra-conserved element locus uce-1061"
BASE COUNT          196 a           94 c          110 g          175 t
ORIGIN      
        1 aaaccagaac tgctataatg taatcagtta caacctgaaa attgtatttt gaaaatcaag
       61 tttattaata tgtaatcttt aggtaatcat atttatcctc ctaatttaca caatatttat
      121 gatagtctac atgtccttga aatagggaac agggacacta cactatgaaa aagtggtcta
      181 gctgctggag ttcataaatt ttgttcagct ttggatgagt tcaaagaatt gccatgtaag
      241 aaaagcctta cagagggaat ttatctgatt atggcagtaa taattaccca gctgtttatt
      301 gcagatagag aaataattca tgtaggcaat aggccgtggt ggcaatgaca ctccgcattt
      361 agtaaatatg caaactgttc acttctaatt aaccaagcta gaggatgccc ttattaaatg
      421 tataaactaa aagtgccttc ctgacaagtg atgaattgtt acattgcaca aactcttgcc
      481 acagagttac tggagtgaac ttggggctta acttcattaa gagatcttgt gggatagtta
      541 aatgaggatg gacagcataa caagacctac ctgac
//
LOCUS       KCOD01001393             752 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 155423pyr ultra-conserved element
            locus uce-3069, sequence.
ACCESSION   KCOD01001393
VERSION     KCOD01001393.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 752)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 752)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..752
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="155423pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>752
                     /note="ultra-conserved element locus uce-3069"
BASE COUNT          175 a          160 c          168 g          249 t
ORIGIN      
        1 gcactctggc cctggcagtg ggcttaccca gctccagcag aagccttggg ctaaaatccc
       61 gtgatttaaa ccccactgag gccagtgtgg actttacttt gcctcataac tcctgctaag
      121 cctgcacctg atgagctgct cggagctgga ttttccctaa taaattcctt tttttgaacc
      181 cacttgttag tcaagcgttg tgcacactaa ctacagcgag ggccctgggc ataaattact
      241 ctcacgtggc actgtctccg agcagccccc cagttatgga ttactttgtt ctcgacttga
      301 caggaacata attagaactg ttgatgaaat ctaccaaatt gttcctccgt ggcctcaatg
      361 gtcaggaaat ttggctgagt cgtatttgtc accgatgtaa aggctctaaa cacttcatat
      421 taactatgtt attaatgtgc cctctaatct gtccgtgaat tggtaacact tggagggagc
      481 ttgtgctcta atagcacctt gtgatgaatt cattgtaatg ctgttcaaaa gtttctggag
      541 ggtatgaaaa gtgaacattt ctaggttgtt tcttttctgt atgtgaattt ttatgttgta
      601 cagttttgtt ttgttttgct taactggaga ttcatttagg ctttacattg acagaccgtt
      661 ttctgttcta taggatttgc tgacatttgg gctgtttcat tgccagagga ggctttgtgt
      721 gtcccaaagg aagtgagtga tctggccata ac
//
LOCUS       KCOD01001394             486 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 155534pyr ultra-conserved element
            locus uce-4830, sequence.
ACCESSION   KCOD01001394
VERSION     KCOD01001394.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 486)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 486)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..486
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="155534pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>486
                     /note="ultra-conserved element locus uce-4830"
BASE COUNT          169 a           94 c           81 g          142 t
ORIGIN      
        1 agttttgcag gggcaactgt aataaaaacc caaaggcagt caactttgtg aagcacatct
       61 cagctttaat gcaccaaatg acatatcact gtgtaaaata aaagaatcat tactacttat
      121 ttttgtaact ggaatgattt aaacacaaac acacacaagc aaacaaactg ctatcatgtt
      181 tttctttccc agtaagctaa gaaagaacct tttaatagtt taattttgtg ggtattaaac
      241 aactagtgtg aaaaacaagc tgcatgtaaa ctatttctac tgcctctgct tcaatgacta
      301 gctaaggcaa cctgttatag gaggtgttaa ttggcaatag gagtacaagt cagaagcatg
      361 ttccccatcg tcctaaccca gcaaggctag gtcattaaag tggaaatgaa ttctttcatg
      421 ccgacttaac cctttcacta catattttca gctgttatat ccaaagacaa ttgagaaaga
      481 ttagct
//
LOCUS       KCOD01001395             754 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 155644pyr ultra-conserved element
            locus uce-6106, sequence.
ACCESSION   KCOD01001395
VERSION     KCOD01001395.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 754)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 754)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..754
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="155644pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>754
                     /note="ultra-conserved element locus uce-6106"
BASE COUNT          236 a          140 c          150 g          228 t
ORIGIN      
        1 agaagatggg tcataatagc taatgtagta ggcaagaagg gagaatagag cacaattccc
       61 taaactcgat aaaataagca attactcttg ttatctgaat ggctctgtca gtggagaagt
      121 tgtctgtgtc ataacagaat ctaacaaaag ctgttgcctt taagcatcaa aggctttggc
      181 cttattatct ttctaagatg tgcatgtata ataagttttc ccaacaaatg gagaggaagc
      241 atctctggca aatataaaat ggtgataaac tatgtccaaa tgattaattc acagaaattc
      301 tccatcacac tgcagctaca tgtgcccgtc tcttctgtta tgcccttgga gattttcata
      361 ctaaacgtat gtgcatattt ttcatggcca ctgatatttg aattgcagcc cgctcccatg
      421 cagaacataa aacacttcaa actgcataat gctgactaaa ttataagttc tccagtggcc
      481 tgaggtagca agggccataa taatgagtgt gcttaagtgg tttgtgtaga ctttaatttt
      541 aatgccctga cttgctgctg ccttttctaa agctagggat tgtctcatac aatcataaca
      601 acagggaaat agaaactgca ttatgctttg aaaaaatgtg ggatgcaaag cagaagctcc
      661 actcacagtg atagccaatt cagctctgtc agtcacatgg aatagaaaat gctttggtga
      721 ctttgtccat acttgtaatt atatttgggc tgtt
//
LOCUS       KCOD01001396             505 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 155751pyr ultra-conserved element
            locus uce-2770, sequence.
ACCESSION   KCOD01001396
VERSION     KCOD01001396.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 505)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 505)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="155751pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>505
                     /note="ultra-conserved element locus uce-2770"
BASE COUNT          188 a           88 c           69 g          160 t
ORIGIN      
        1 ccccaggaaa tacaaccacc cagaatttta gcacataagt aagaatttct caaaaataat
       61 tgtttggtct taatgatgtg aatgctcttt tcattggaat gaaaaacaat cactgaattc
      121 tttgcatatt ttatttttct ttttgatttc caactcacac acatctggca tattttacat
      181 ctttgcaata aaacatggtt acaatagctt aaggaattta tatatccaaa atatttcacc
      241 atgatctcaa gatgaaatga acttgtcttc cagatgttca atagtctccc aattctaagc
      301 tacgaactca agatattgct tacagacagg tgatgaataa cttaatcatt aggttatgat
      361 ttccgaatct tataaataca aacaacaatg gagaaggaaa ttcagggcta aacttactaa
      421 tacaaggtgg ataacaaata agtaatcaca tcaataaata atgatatgtt cctggtgcaa
      481 agtgccaata caaagaatcc attat
//
LOCUS       KCOD01001397             717 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 155957pyr ultra-conserved element
            locus uce-2037, sequence.
ACCESSION   KCOD01001397
VERSION     KCOD01001397.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 717)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 717)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..717
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="155957pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>717
                     /note="ultra-conserved element locus uce-2037"
BASE COUNT          206 a          115 c          150 g          246 t
ORIGIN      
        1 ttgttaacat attatcttta ttctctgcaa tcattgccag ggtgatcagc ttagtataaa
       61 agccaagctt ttatgaggta gctgacaagg gatttggaat tttccctttt cagcttacag
      121 aaaatcgtgt aatctcatgc agactatttt ctctttttct atatcaatcc taaattaata
      181 cagtaggtgc tctgcagcca gcatggtttt gcattgatct tggccagctt gtttacagtg
      241 ttttggcaag ttgctgatgt acttctccct ggggatagag caggggttaa ttgctgttaa
      301 actctcagtg ccaagtaatg gttcagactc tgtgctacat taaagatgac actaataagg
      361 aaagagtgca ctggattgct ctgtgttgaa aattggactt gtggtgacag aaacttggag
      421 cagagctgat gtaataggga ggccataatg taattataac tgctgaacat gtgtcatacc
      481 aagttaaatg aaacattaat gaatcaaaac aggtgatgga gtgttgctct ttcagcagat
      541 agaggtgttt tcaaggtcaa attgtcatta atctaataat ctgtaaactg tatatgcttc
      601 aaattataag caaaatcatc tttaatgggt gtatttcttg tcctgtacca aagggaacag
      661 aagatgctgt tctcagtgta atgttgttta tccctctgtt attatatttc tgttata
//
LOCUS       KCOD01001398             688 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 156067pyr ultra-conserved element
            locus uce-273, sequence.
ACCESSION   KCOD01001398
VERSION     KCOD01001398.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 688)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="156067pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>688
                     /note="ultra-conserved element locus uce-273"
BASE COUNT          222 a          134 c          141 g          191 t
ORIGIN      
        1 caagcaagcc ttggcactta gtgcaaatcc attttaagag aaattccttc acaactgttt
       61 atctttgcaa taactcctac aaagctcatt agtgccagcc ttggtttatc ccccatgttg
      121 tgcatttatc tctgggatgc attatcaaca tgtggcacat gtccttgaca tgcacagaag
      181 agttgcaccc caggatagca gcatgcatga caatagtgtt gactcttact cctttatggt
      241 tgctgggatg taaccgagaa atctaataac tgtgacagta ggcctttagg tttctccttg
      301 cctttccaga cagtgaagct gcacagacac taatgaaagg ttaaatgaat aggaatagct
      361 gacaagaggt acaataaaga agggacttgg taatccacag acactgagca gagatccttg
      421 gctcaagccg agaaaggaca gcacatcgtc gagtcacaat atttaaaaca gcttgctata
      481 cacagaggct tttgtgtctg ggtacatgtc tggctttgga agaaaaaaaa gatactgaaa
      541 agagatttca gcatggggca ctttggcaaa tgtcaggtca caaatgtttt ttgtttgctg
      601 ttacatcttt gtattcaaca aagagcattg actaagagca caaatcaaaa gtttcaaaat
      661 aatacatatt tgacaaatat aataaagt
//
LOCUS       KCOD01001399             823 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 156177pyr ultra-conserved element
            locus uce-1988, sequence.
ACCESSION   KCOD01001399
VERSION     KCOD01001399.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 823)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 823)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..823
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="156177pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>823
                     /note="ultra-conserved element locus uce-1988"
BASE COUNT          208 a          161 c          194 g          260 t
ORIGIN      
        1 tgtcttgttt tatgagcaag atcctgtttt tctatttcgt tttctttgtg cttttggtaa
       61 ggacagatct ggctctttgg atactaaata ggcaactaat tcaattggtg ctttctccta
      121 gggtctgctt gcaaaccagt gccaggctca caggctcttt gtgtactgcc ctccctgcat
      181 gtgtctgtgc tcccctggct agtcagtttt ttgtctgtga tggttaataa gctttgagcc
      241 tagtagtcaa atgtggtggg aacggggaca agacgagggt ccttagtgaa ggtgtttgtt
      301 gttaaataga acaattcagc tgtctcttta gaaaacttga caaaaggaaa tgctccctgc
      361 tgaaaatttt cttagcctgt tgcacaaaag atgaagtttg tttaagaaat tgctgctaaa
      421 gaaagcgtca acccattaag gtaattatat ggaacctgtg ccgtataaca gcttaattga
      481 tgttaatgtt tgtctaattg gtgattggga gagtgcaaag gactaaaggt cttcatagca
      541 ctttcagtca cggctctgaa agggttcttc tggttttcac agttataaca atgcctgcgc
      601 gtctttctca gattacgcct tgttttcagc cccttacagc attctgctcc actacttaaa
      661 gcgtaaaata agggtgaaga gccattgtct aatgcagcct ttttcaaaga gtgtttctga
      721 cagggattgt tctaggaatc aggcaggaga gaagggagtg tgagaggtga aagccactat
      781 cacccacttg tgtcacatcc ccaatgagcg gcaagagccg cct
//
LOCUS       KCOD01001400             399 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 156397pyr ultra-conserved element
            locus uce-253, sequence.
ACCESSION   KCOD01001400
VERSION     KCOD01001400.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 399)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 399)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..399
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="156397pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>399
                     /note="ultra-conserved element locus uce-253"
BASE COUNT          111 a           84 c           63 g          141 t
ORIGIN      
        1 gaaacactga caagtacagg tccacctctc atttgtctca ctttgataac tttgaaactc
       61 ttccttcact ttggtaataa tgtaaagtat caactaaaaa ttgcaatgca tgcatttcat
      121 ttgagtttta ttgccttaac agacagcatt agattacaaa agaggacatt tttcttctca
      181 gttttagctt attcttatga tttatgatta gatacagcaa gagttcataa acttccctga
      241 cctgctgaca gtttttacag gctccttgat ttatttccat ctcaaactta acagctttca
      301 tgtgactgat attcctagag tcctggcatg gctgcagcac agcctgcaag ggctcctcta
      361 atctccgtgt tactaattta aatgaagtct tggtctgtt
//
LOCUS       KCOD01001401             472 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 156601pyr ultra-conserved element
            locus uce-4832, sequence.
ACCESSION   KCOD01001401
VERSION     KCOD01001401.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 472)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 472)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..472
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="156601pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>472
                     /note="ultra-conserved element locus uce-4832"
BASE COUNT          153 a           80 c           79 g          160 t
ORIGIN      
        1 tactctgttg tcaaaagaca caaactgatc cgaattcact ttacaaatat taatacagac
       61 ccggaagata aatgtatgtg aaccctgata acctcctgta acattgtgct gccttgtaga
      121 tggtaatgtg agttctctca gtatttatgt tgaaatttct aacattcaac ctagtcctta
      181 ttctgttaat ttaataataa aagatgcttt atccatttgt gcaaaggtaa acgcagattg
      241 tatctttttt aatggtacgg cataaaaaaa gtaaccctta aatgaagctg ctctattact
      301 atagagtact ttaacatgta tagatatctt gtaaacttgt attgtggatg tgtaaataat
      361 acgttctttg ggtttttaac accgcatgta aagtcaaaat aaaatattcc catgtacagt
      421 ttcattatta gtgcagttac cgtaggggaa agctcagctc acagcagctc tg
//
LOCUS       KCOD01001402             569 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 156709pyr ultra-conserved element
            locus uce-3033, sequence.
ACCESSION   KCOD01001402
VERSION     KCOD01001402.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 569)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 569)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..569
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="156709pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>569
                     /note="ultra-conserved element locus uce-3033"
BASE COUNT          163 a          115 c          168 g          123 t
ORIGIN      
        1 taggtttaca ggggactgga aaggacaaaa acagctgttc cttctttgca caaaagatgt
       61 ttccttgaag aaggcattcg gagtctctta ttctagagca gaaaaggctt tactgatgat
      121 gagctctggc aatagtggtg ggaggcaaaa ggatatggtg gttaacagag ggactggatg
      181 atgataggca gggagaatga gagcaacaga taggagtggg agaggggtgg gaagcatagg
      241 tgaggaagtg agccaggaga agacagcgtg actgtgtctg atctacactg acgagtacca
      301 atgttaactg tcacctctca tctccaaact aaatcacgcc tggaattgga ggcagcaagg
      361 agctgataga gtcagcctta gagagccgac aagtcaatca gagcggagat gcgtggagag
      421 acaccagctt tatagggctc agtgccttca ttcatcgcag gatttacacc tgtcaggccc
      481 ccgcgggggg agcgtgctgg gactcacttt ggcaccactt aaaatgggac aacagacaca
      541 ttactgcaat caccctctgc tttcctgtc
//
LOCUS       KCOD01001403             553 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 156817pyr ultra-conserved element
            locus uce-5906, sequence.
ACCESSION   KCOD01001403
VERSION     KCOD01001403.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 553)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 553)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..553
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="156817pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>553
                     /note="ultra-conserved element locus uce-5906"
BASE COUNT          148 a          140 c          125 g          140 t
ORIGIN      
        1 caaggagcgc cacatcatgt gagacgtttc atctccacga gtaacctcgg caccgtggca
       61 aatgaataca tgaatacagt acagccagga gagatgaaac gcattgaccg ctgcccctac
      121 tcaccacaca aatgtcattc gtttggaatt ttttctttct tgttttcccg acacattttg
      181 gtcccttttt cgcttctccc cttttccctt aagtagagat gacacagatc aatacctttg
      241 atggaaagta ataatcaggc ctattaagtg acaaaggttt actctgtaac agctgtgctg
      301 gcgggagagg agagcttgtc tgactaatga atcatgaaac aatcaggcag tagccatttg
      361 tgtttagatc tgtaaatatg gtgtggttca agtgccagac catctccagc actccagctg
      421 ggggcacaga tggtccacat tcagcacagc acaagtgtaa agaaaagcct ccctccttcc
      481 cctgtcccac agtgcccctc ccaaaggaga gagcagccag cttggggata cacttgggct
      541 gtgggcagga atc
//
LOCUS       KCOD01001404             459 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 156926pyr ultra-conserved element
            locus uce-2213, sequence.
ACCESSION   KCOD01001404
VERSION     KCOD01001404.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 459)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 459)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..459
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="156926pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>459
                     /note="ultra-conserved element locus uce-2213"
BASE COUNT          150 a           78 c           91 g          140 t
ORIGIN      
        1 ttaagtgcta ttttttgatt gtaaataatg tgacttaaga tgttatacaa ccgctttatg
       61 tcaaaggata agcacagttg aaatctcatc agaattacct gtctcgcctt gcatttagaa
      121 ctgaagactg tccattcact atggaatgat gagttattgg tggtgatgct ttggaagtgg
      181 tggaggaggt agtagaggag gaattgttag tagtgaggtc tagccctcca tgtttaatgc
      241 cattgtcttc catactgtga actccagtca cttctttcca taactgctga atctcagcag
      301 gacttaagcc agctataaaa tgaaagagag ccccactaat ataacaaaat aaagagtttc
      361 atataatgag ctcagtgtta ttaatggatt aatgccaaca ataaagctga tgctgtttta
      421 ccagcacaaa caacatgtag taaaaaaatc cataaattc
//
LOCUS       KCOD01001405             805 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 157036pyr ultra-conserved element
            locus uce-2211, sequence.
ACCESSION   KCOD01001405
VERSION     KCOD01001405.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 805)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 805)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..805
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="157036pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>805
                     /note="ultra-conserved element locus uce-2211"
BASE COUNT          245 a          169 c          160 g          231 t
ORIGIN      
        1 gcaatatatt tgcaaatgtc tctaagaaaa agtgcttgga aatcctcatc gctcaatcac
       61 ctagcaacct atgttagtgc tgctttcaat tttgaacagg cagccttcac attcaaagat
      121 gcaaactgat gcaactgtaa gtttaaagca aaacaaaaac aaaaacagag gttttgttat
      181 ttaaataaaa tgcccctacc tttcttctga gagtacgatg gcgactgcac ttgagaaaaa
      241 gtaggttttt cttctgtgaa aaattcaggt tggttgtact gattcagggc cacgtccatg
      301 tcagagtact cgcttttaaa cacgtttcca gggtaactac aggtataagg ctgattcacc
      361 gcccaggcct gttccatata tatgttgtta ctgtgcagga cctgagcatc acaactgctg
      421 taaccctgat tatcttcgat atatgtgcaa taatcagtgg actgcatata gcaattgcta
      481 ccagcagctg ggtgcacttc atatatttct tgcatacagt agttcatttt gttagcctat
      541 ctcagcttct actttacgta cacacacaca tgcatacaca cgcaggcatg catacacatg
      601 gatcgggaga ggagcaatga atatacacca acaaagtcag ctgcaaaaca gcccgtttta
      661 ctttggatgt gctaaaatcc tatttatatt gggaaggctt gtgaactccc ctgccagtca
      721 aacatattgg gaagcagatt tatgacagtc aaaggtctta atctgtgact gtaagttaat
      781 tccaagggaa gatggcagtc aggta
//
LOCUS       KCOD01001406             419 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 157143pyr ultra-conserved element
            locus uce-6413, sequence.
ACCESSION   KCOD01001406
VERSION     KCOD01001406.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 419)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 419)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="157143pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>419
                     /note="ultra-conserved element locus uce-6413"
BASE COUNT          141 a           62 c           93 g          123 t
ORIGIN      
        1 agggtattgt ttaaaaccag tgttaaaaga tggagatatc agggggcata tgacttttat
       61 gatggaactg cagatgggag ggagctatga attggtttac actgacagcc aaaccatgaa
      121 agaaaggaaa gatcagaaat atttgaaaat gagatcatac agcatgtgaa ctatacagac
      181 atctcaacca tgtttttttt atgagaagtc ttactgacat ttggaaagca gggaccagtt
      241 ccctagtctt aagttgactg acatttaggg gcaacgtaag gcatgatttc ctttccctct
      301 ttttaaattg aagttttcat aaattggggt gaaggagaag cctggttaca tcttgcaaag
      361 cattcagatc tgtgtagaaa tatgaaaaaa ataacctgtg acattttaaa cactttgct
//
LOCUS       KCOD01001407             863 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 157254pyr ultra-conserved element
            locus uce-1101, sequence.
ACCESSION   KCOD01001407
VERSION     KCOD01001407.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 863)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 863)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..863
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="157254pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>863
                     /note="ultra-conserved element locus uce-1101"
BASE COUNT          257 a          139 c          215 g          252 t
ORIGIN      
        1 tatacttaaa ggaaaagaaa ttctgcttgc tctaacatga aatgtaaaac tttctacctc
       61 gagcaacaaa cccatctgtc aaagctagtc tgtaaagcag agccccgctg gatgatctga
      121 aaacagctgt gctgtattcc agtctggcaa gtctttgggt aatatttgtc aatgcccaac
      181 gggttgcgtg tgtgctgaga agtttagccc caaagaatga gtttggaaaa gcagaaggaa
      241 atggagacct gccaagcctg ttggctggag tcatggacaa gagcaaggcc tgtctgaact
      301 gccactcagt ttttattctg cgagtttgca gggttggtga ttagagtggc tttcgcccaa
      361 ttatgctgtg attattccgc tgcactgtaa ttgactgggg agatatgcta atacctgtca
      421 tttgggatga taaaagatga gcggaggacg caatgcatta tttagctggc tgtgtgatag
      481 atgagggatg cgcagagtgc tttaattgct gagaagagag gttaagctga acgaacggat
      541 gaattagaaa tgagtttttt tatggcttgt ggaaaagtga aataaaggga aatgtgcttt
      601 aaaactgtag cagcagatag aagcaaacac gacaagacgc ggtcttttag gcagcttact
      661 ttcttaattt aaatctataa gacaaaacac agtttagtgc tcagtaaata atagtaacaa
      721 taatgataag aaatgcttgg tgagttcata tccttagcaa gaaaatcgtt gtagtttttg
      781 tttgaggtga aatttggttg tttggaacct tcacaatttc tgttgccgtt cagaccttta
      841 aaacttgttt ctaagggctg tgg
//
LOCUS       KCOD01001408             465 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 157361pyr ultra-conserved element
            locus uce-2475, sequence.
ACCESSION   KCOD01001408
VERSION     KCOD01001408.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 465)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 465)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..465
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="157361pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>465
                     /note="ultra-conserved element locus uce-2475"
BASE COUNT          174 a           72 c           77 g          142 t
ORIGIN      
        1 ctatatgaag gcattatcac taaatctgaa aagaaaatat tacaggcaga aattataagg
       61 agaagtttat aaaacaaaga tatcctttgg cagaatatgc tcttataatc aagcttttag
      121 cataccatag tttaaaaaaa ataaaaattt tgcccacata tacactaata aaaataaatc
      181 tgtttccgat tactaactat gcagcacagg tgcttgtttg ttacgagaga ggcatgttca
      241 ttaattttca gctatgaaaa gtgcactgtg ccataaatat acaattcaaa atgtactgct
      301 gataaatgaa tacacagatt gttaatgtgc cagagtaggg tattgggcat aaaacacatg
      361 ccaaacagga gcacattggt gatgtgctaa tgcttttaaa tctgggttta atgtaggcac
      421 ataaccagct ttttacatta ttgcactaac ttttaccaga attta
//
LOCUS       KCOD01001409             563 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 157468pyr ultra-conserved element
            locus uce-1918, sequence.
ACCESSION   KCOD01001409
VERSION     KCOD01001409.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 563)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 563)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..563
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="157468pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>563
                     /note="ultra-conserved element locus uce-1918"
BASE COUNT          175 a           81 c          120 g          187 t
ORIGIN      
        1 gctaagtaga tttggtgaag aaggacaata aaacagcgaa acagttaatc gccgtgctaa
       61 ttatttgtcc tatttttctt aatacaaatt aaatgtttca cttggttaat gacaagtttg
      121 atcaaacagt ttcataaact gatggattga ctttgaaatg aattcagggg gaaaaaaatg
      181 acatgatgca gatttggcag agggccgtct ctagtgggaa cagatgccca acaaatttgg
      241 cgactagttt tgttctcttc tatctgttgc agttcacaat cctaatgaat gttatgttta
      301 aataacatga ataaagataa agtgaaaatg aattcaactc cagtttgagc agcagaatag
      361 aaatgagcaa actgtattat cttctgccac ctaatctggg ttgaatttcc tctgtatctt
      421 tttttgtttg ttgaagaatc cttttcttga gtctccttgg ccattgacaa ggtcttttga
      481 gatgaatatg aaaagataga tttaaaggtt aaggccaggg tcagatggtt gcagatgttt
      541 tgtgagagat tgttcggttc agt
//
LOCUS       KCOD01001410             317 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 157574pyr ultra-conserved element
            locus uce-3070, sequence.
ACCESSION   KCOD01001410
VERSION     KCOD01001410.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 317)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 317)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..317
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="157574pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>317
                     /note="ultra-conserved element locus uce-3070"
BASE COUNT           86 a           73 c           59 g           99 t
ORIGIN      
        1 gcaaggggag ctgttggcac ataataccat gattgtgcat tagatcatcc actggctcct
       61 gtaatatcca cttccagcta taaggagtca tgtttcaaca cctccgattc cctggtgctg
      121 acaagctaaa caacttgttt tgtctctgtg agctcttctc tggtgattaa ctgcttatgg
      181 tgaatactaa ttatatgaaa gtatagtaca gtagagatag tgtcctactt ctctccgtcc
      241 tcttcttgca ctataaattc agcaagagga tgacattttt caggtccaca aataggtctc
      301 tcacagcaaa actacct
//
LOCUS       KCOD01001411             529 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 157673pyr ultra-conserved element
            locus uce-121, sequence.
ACCESSION   KCOD01001411
VERSION     KCOD01001411.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 529)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 529)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="157673pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>529
                     /note="ultra-conserved element locus uce-121"
BASE COUNT          162 a           64 c           99 g          204 t
ORIGIN      
        1 cctttgttaa atgtatggat gcagacgcct tgatgaagat cttaattttg gttaaaaaaa
       61 tagtgaaaat gtacaaaata tctatcacta ctgataggag gtaatatttc tgtgtagaaa
      121 tgaaaaaatg gtttgttttt agtattagtg tagatgtaca cattccagca aatgtatttg
      181 caattatgtg gtcaatgctt tgtgatataa atgtactttt tcaatgtata ctttatcact
      241 tttaaaatgc ctgttttgtg ctttacaata aataatatga aacctcctgt gttggtaagt
      301 tggatatgtg ggtatatgca gaattatagg agtgatttgc aacgctgaat caaggtacct
      361 gtacacaaat ataaaccttg ttgagtttaa aatcttgtga ttagcatgtt tttcttgcag
      421 aatagctgta gaaggaggat ctctttcatt cattgtattt tgctgccagt aatcttgatt
      481 tttctttcta cttgattaaa actgcatgtg tttaagaaga tgatctttt
//
LOCUS       KCOD01001412             481 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 157780pyr ultra-conserved element
            locus uce-980, sequence.
ACCESSION   KCOD01001412
VERSION     KCOD01001412.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 481)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 481)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..481
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="157780pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>481
                     /note="ultra-conserved element locus uce-980"
BASE COUNT          169 a           84 c           74 g          154 t
ORIGIN      
        1 gaatggatat atccagacag ctgatattgc ccattactac acacattttt gtttattgaa
       61 tattgttgtg gtttacagat ttaatagacc caacactgaa agttctgtga gttgtaacca
      121 ctttttgatc ttcctgattt gccatgttta acattgtttt attgatacca aagtgaaaaa
      181 tggcctgtgc ttacacttac aaggatctca gatgaatgtt ctgactgctc aacacggcaa
      241 gaaaattcac tttcacagtc aacaagtcat cttactcagt agaacacaaa agttaaatgg
      301 tctgtaactt caatattagc aaggaaaata cagtacaaat tactaaaaaa tactaaaata
      361 tagaattgtg gtcaggtatc cccactacat taatcgcagc agtagcctga aatttgaaac
      421 ttttaataaa aagttcttaa atataaatta catggcaaat gtacagtaca ttgctttgtc
      481 a
//
LOCUS       KCOD01001413             365 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 157887pyr ultra-conserved element
            locus uce-7829, sequence.
ACCESSION   KCOD01001413
VERSION     KCOD01001413.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 365)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 365)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..365
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="157887pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>365
                     /note="ultra-conserved element locus uce-7829"
BASE COUNT          118 a           59 c           59 g          129 t
ORIGIN      
        1 gaataaatca cattgcaagc ctttcagaaa tgccattttc agactctacc ttctgatgat
       61 tactgttctc ttttttctgc aaagttctat agagaatata ttttaattag cttccacttg
      121 ataccacttc atacacactg cccagatttg acccagtgtc tgatcatata gaatgcatta
      181 caaaagaact ggtcatttga gtgctttaat atagctttgc attaatgtga gacatcattt
      241 agacaaggca ttaaaagtgt tattttaatg actgaagtgt gtagggtggg aagaagctta
      301 atctttatag gaagaacaat ttcaattagc tctaaaatat taatttgttg gtataactat
      361 atact
//
LOCUS       KCOD01001414             351 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 157998pyr ultra-conserved element
            locus uce-7175, sequence.
ACCESSION   KCOD01001414
VERSION     KCOD01001414.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 351)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 351)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..351
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="157998pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>351
                     /note="ultra-conserved element locus uce-7175"
BASE COUNT           84 a           74 c           93 g          100 t
ORIGIN      
        1 aagccattta atgcagacaa aggttgtatg aaaatataat tctgcttttg ttagcagcca
       61 tcaaactcta aaaagcgtca cttttgtttt cttgtaacat tgtgaaaacc tcgtgtcgga
      121 tcgagagctg gggccctctc gactaatcgc ctctcctttg tgtttttaga ttataggggc
      181 aattagtgtt gtcaaaacct ctggcaattc tctttgctct tgacagggtg tcagtccgct
      241 gggcgagaaa tggaaggtgt tataactctc cggtaattag gatgcctccg atttgaaaat
      301 gccagcaaac gtgttcgagg ggccgcggga gggggcgggg agcccgcccg g
//
LOCUS       KCOD01001415             312 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 158103pyr ultra-conserved element
            locus uce-2157, sequence.
ACCESSION   KCOD01001415
VERSION     KCOD01001415.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 312)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 312)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..312
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="158103pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>312
                     /note="ultra-conserved element locus uce-2157"
BASE COUNT          101 a           49 c           85 g           77 t
ORIGIN      
        1 ttttttaata gttcaagctc cttatggaac atttggatcc tgatgaagag gaagaagacg
       61 gagaggtgtc agctagcaca aatgctcgca acaaagcaat tacctcgctg cttggaggag
      121 gcagccctaa aaacaatgca gctgagacag aggacgatga aagtgatggg gaggatagag
      181 gaggaggcac ttcaggggtg aggcggagga ggagtcaacg tatttcgcag cgtattacgt
      241 aaaatgattt ttatgtgctt ataaatgtca gtttattata ttaaatgtac accaagtaat
      301 gtaatccaca tg
//
LOCUS       KCOD01001416             530 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 158210pyr ultra-conserved element
            locus uce-4578, sequence.
ACCESSION   KCOD01001416
VERSION     KCOD01001416.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 530)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 530)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="158210pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>530
                     /note="ultra-conserved element locus uce-4578"
BASE COUNT          150 a           93 c          104 g          183 t
ORIGIN      
        1 tcgcttcctt ctcccaacca accaagcagg ttgctgaaat tgggacaaat gctcacactt
       61 tatggaataa aaatcgtatt caatcttttc acggtgccca gaatgcttcc aatgaattgt
      121 gtttgcaggc ttccatccaa actttctaat ggaattccat ctgaagctgt ctgtaatatg
      181 tgtcttgttc acggctttcc tttgcacagt ataatggctt ctttaagctt tgaaagtgag
      241 ttgttgtggc ctaaagtaac aaatcagttt tggaatgctg tctgttgtaa atgatttggg
      301 ggtaataaat tttctggtac aaagcaatag gcagagtttt cataatgttg aacagtttgg
      361 acttgtcttg aagggaacaa tgtcgcgaaa gcaatgtgct ggttccaact atttgttatt
      421 ataaaagaca atccttaagg tagaatcctc atcagatttc atgctttgct gtaacttgtt
      481 ttattcctag acaaataaaa atatttgagc atagttgtgt atctgttaca
//
LOCUS       KCOD01001417             543 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 158316pyr ultra-conserved element
            locus uce-3111, sequence.
ACCESSION   KCOD01001417
VERSION     KCOD01001417.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 543)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 543)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..543
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="158316pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>543
                     /note="ultra-conserved element locus uce-3111"
BASE COUNT          135 a          129 c          114 g          165 t
ORIGIN      
        1 tttttaacct agccagaaaa ttggagggct cagaaatagc acatactgct ccagaggttt
       61 ctccacagta aaacggagtc ttttccacag aagccacagg acatccacag agttggggaa
      121 gaatgtttta ggaacgcgat accatttttc aacatgtttg tcttcttcac tttcacttag
      181 aaccaaacgc tcactcacct tagatttctc ctgatgcagc tcaatttgaa tgtctgttag
      241 tttagtcctg agttcctcat tggcagcctg tagggcaaca atcagtgcct caggcttttc
      301 gcccttgctc cgtccttttt ttgacatggt ttcttatcag cagagtccac gtgtttattt
      361 caaatatgga ctgccatctt tttctgttcc tttcagtgcc agcaactact gcgtgacatt
      421 ccttgaggtc ctggactcag ctgctttgga aggggaaata agattatttg tcagtggaga
      481 gtgcagctgg acatgcagac catctccaaa tttgtctgaa aacctgcaag ggagatccca
      541 gca
//
LOCUS       KCOD01001418             531 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 158425pyr ultra-conserved element
            locus uce-5371, sequence.
ACCESSION   KCOD01001418
VERSION     KCOD01001418.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 531)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 531)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..531
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="158425pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>531
                     /note="ultra-conserved element locus uce-5371"
BASE COUNT          141 a          106 c          113 g          171 t
ORIGIN      
        1 cattggtgtg tggtgcagat ggacatgagc accttagaaa ccagtgcctg ctgcataaca
       61 gacattttca catggaactc acatcacaca catcctagct tgggaaaggt tttcaggtgg
      121 acactcaaaa ctctgattca gcaaggcgaa ggtccttttt ttctgtagct taaaaacctg
      181 ctgctgtttt ctaggtgtaa agcaccaaga ctcacagaat tctttcttgg catttttgaa
      241 tgcgcctacc tctgctctgg atcaatttga agtaagtgag tggaactgct cttgtgtgta
      301 ggttatgtgc atatttgctg agagtttgct cctgtatcac cccaataata tttgtcattt
      361 acagcgctgg ctgtcttctc ttgaatgctt cagtgaattc tcccttgaat gcagaaattt
      421 gcctgatgca gtgaacatga aaagcatagt tgttcaaata gctctttgta ttcagaaaaa
      481 tgcgtagtgg tttggtaaaa atgagaaatc atccttgatt gtatcccatt a
//
LOCUS       KCOD01001419             701 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 158535pyr ultra-conserved element
            locus uce-7654, sequence.
ACCESSION   KCOD01001419
VERSION     KCOD01001419.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 701)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 701)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..701
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="158535pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>701
                     /note="ultra-conserved element locus uce-7654"
BASE COUNT          205 a          142 c          158 g          196 t
ORIGIN      
        1 aaaagccaga agccttatgg agtgctgtta aatatcgtct cacaggtggg cctttcttaa
       61 aataatgaga agtttcatgc cagttctagt cccattgagt atttacacct tggacagctt
      121 tgctcacaag aagtagaaaa cagatacaat acatggcttg aaaaatgacc agagtatgca
      181 cctatagtac tgtacactaa ataaaataca caaggcagca atacttaggg gccagaaaca
      241 ctgcttacta caagtcagtt atggaatcat aatttacagt aaaaatgggc atgtcccaag
      301 gctcaatttt gttttctttt gtcatttaca gtagaataaa tatttgtcgc tattgctaca
      361 ctttgtttac attctaacct agtaaatgca gaaagctagt gtaaagcata tagattacgt
      421 gtaggtccca tacgtatgac agtttgttca agactagtag gtttttaaat ggctaggagg
      481 aggagaggaa gagagttgtg cttacgatca gctgcttttt atgtcaaatt taatatcaaa
      541 gcgtccctgg aagcggtcct tgtcgctgta gacgatgttc tgcccgtagg ccctgcactc
      601 cacgcgcacc tccatgtcgt aggtcaggtt ggtgaactgc acggccacca gcggctgcag
      661 gtaccgcggc tgcagcagct tcccgtagta ggggtagtac t
//
LOCUS       KCOD01001420             529 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 158643pyr ultra-conserved element
            locus uce-1081, sequence.
ACCESSION   KCOD01001420
VERSION     KCOD01001420.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 529)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 529)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="158643pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>529
                     /note="ultra-conserved element locus uce-1081"
BASE COUNT          150 a          101 c          106 g          172 t
ORIGIN      
        1 gaggaacatc tgggctatgt cagcatctta cacgcattta cttaattgca gtcttgaatg
       61 aaattgtccg tcataaaaga tgcctcgaga atttcgattt cagccgtctg ctcctatcgt
      121 ttgtcttaat tttatttcac taccactaac tgtagacact acttcagaaa tattttgaat
      181 ttagttttaa ttgtacagct ttcaactcac gcaacatttc tctttgtgtt gaaagcatca
      241 cggtgattta tcctcattat tgtgtaaata ggtttcggca gttctcagta aataaaacaa
      301 agagtgacag gaggagaagg gggaatttgc tttcctacca attagagtag ccttaggcag
      361 tacttttaag aggagataaa tcctgcaaat cactaaaatg atcctgtcac atgcaccaaa
      421 tattaaaatc acacagcggc gcacttcata cagtttgctt tggtttaatg agttggggtg
      481 ggcttcgtca tgaggtttgc atctcgcagt tggggactct tgattgaca
//
LOCUS       KCOD01001421             544 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 158752pyr ultra-conserved element
            locus uce-2446, sequence.
ACCESSION   KCOD01001421
VERSION     KCOD01001421.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 544)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 544)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..544
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="158752pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>544
                     /note="ultra-conserved element locus uce-2446"
BASE COUNT          181 a           86 c          105 g          172 t
ORIGIN      
        1 tttaagtttc tgaccctttt gcaaacagga atgtatcaag ggaagatgaa aagaagtagc
       61 accattgaga ttaaagggac caaattttac cagcaatcac agcaaatatc tgacttgctt
      121 aagtgaagcc aattactgta ttattgcctc cttttgcact atgcacagta gggatgtcac
      181 tggataatgg tttgcatgta gagttaatca ctttgatgca tttctgactg atcccagcaa
      241 attatgtttt ggttccacta tattaaacac aagagcaggg gattatcatt aataaatcta
      301 aggcacagca tgcataaatc ttgaataaat caaatatcaa ttacataggc agtatctgct
      361 gacatctgct ttcatcaaat aatatatttg aaatagattt tattccactt tgttggagtc
      421 aaaggaatgt tagactggtg tgcaaagatc taaagagttg ggttatgtat gagtgctatt
      481 gcttgctgag caacataaaa caggttttta gacataaata gcacattggt ttcacagagt
      541 agtt
//
LOCUS       KCOD01001422             775 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 158862pyr ultra-conserved element
            locus uce-417, sequence.
ACCESSION   KCOD01001422
VERSION     KCOD01001422.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 775)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 775)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..775
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="158862pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>775
                     /note="ultra-conserved element locus uce-417"
BASE COUNT          226 a          186 c          144 g          219 t
ORIGIN      
        1 gttgagatgc ctcataccta caaccaatct gttgctttta caagtttaat ctcggtatta
       61 aggagctgac tgtggaacca tgtcgctgta acatcttcaa cccagctgta catcatataa
      121 accgctatag gagggggcag tctcccatca ttcctggcag cagcacatac ctttaactcc
      181 ctaatctgta atactacaaa ataccgctct catttcttcc caagcacaag tggactacca
      241 gcaagggtcc aacagtgtta ttcctaatta cctttttttc actcttgatc ctgtggcgct
      301 cataattagt tacctggggc tgcaatccaa tttgaagtga tgacaagaaa gtgatccatg
      361 aaaaagtaat aagttaaatc caatttcagc cttcctctaa ttaaatgcac atggaactaa
      421 tgactcaaac cctaccattt cagtgataat ggtaattagc gaggtgggag tcactctctt
      481 ttttcaacac tgtaggtgta aaccacaagg taaaatggca ggagcactct taattacatg
      541 tgtcattttg tcagcaattt acacatttct gaccagtcag gaaggtttca tttgttttcc
      601 ccttccccga ggtgggacat ttgggctcgg gcactgccag ccccacagcc ctgctcccaa
      661 cctgggcaga aattacaaca aacctgttct ataaatgctt aatgtcaaag cagaaagcct
      721 gcaagaaaat gatactcagg gctctaataa gaatgagaga tcctggcttc tactt
//
LOCUS       KCOD01001423             792 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 158973pyr ultra-conserved element
            locus uce-351, sequence.
ACCESSION   KCOD01001423
VERSION     KCOD01001423.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 792)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 792)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..792
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="158973pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>792
                     /note="ultra-conserved element locus uce-351"
BASE COUNT          246 a          152 c          141 g          253 t
ORIGIN      
        1 aaaggaaact tctgtaaatg taatagtgtt caaaggagat aaagaacagc tcatatttac
       61 attttaacac agctgcttaa ggttactgtg atggccttgt gaacttacat ctcgctgttc
      121 ttgtgttata ggaggaaaaa gggctgatgt gagaacaaag tactgtcagc aatctaccct
      181 ttaaactgct tagacctgga aggcacgctc attgctttat ttctttgctc atttttctcc
      241 aagattggta catctgaact acctttctac agatctatac agcaccactg ctcagcaaga
      301 aaaagagagt tatattttcc ccttgagtta ggacgcctca tgacaaatga taatggataa
      361 tcaataaact gggaaatatg aggccacaaa ctttatgaag ccaagagaca tattacttct
      421 gaacaacact catttccctt aacaaagtca ctactagact gtgcctaata atctgaaaga
      481 aaatcaaagg acctgcaacc acatcagcaa tattggcaac ttattccact ttaatggcat
      541 tttgattgat ttttctgcct aatggtagtt ttatactgta gatttgacgc tgcttctgca
      601 aaatagttgt gtgtaataaa catccctgaa ggcaaacagt gaacattaag gttcttgtct
      661 tactaggagt cataattgaa gcttgaccaa cattgccttt ggccttttta aagaaatctt
      721 ttgcaaaagc tattcccttt ctgcttttcc tttctgtgaa ggacttgata tgtgatcaag
      781 gcattttgtt ta
//
LOCUS       KCOD01001424             690 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 159085pyr ultra-conserved element
            locus uce-3957, sequence.
ACCESSION   KCOD01001424
VERSION     KCOD01001424.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 690)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 690)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..690
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="159085pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>690
                     /note="ultra-conserved element locus uce-3957"
BASE COUNT          222 a          102 c          117 g          249 t
ORIGIN      
        1 tcaaatacgt gaactcataa gtgtttgaat tttatgacct ctgagtcatc ctaaatacaa
       61 tttgattgcc ttagggtgca ttgagctatt gcaaatacag gttgctttca aaagaatcac
      121 aggagaatta attttaatgc aatttaaaat gtaaccttgt caattgcact tttgacttgt
      181 actaaactgc actgtgatta ttacacaggt aaaatattca gtgttatgtt atggtaactg
      241 caagcattga ttaaactctc cagtgttcat gaaggctgac agggattcaa aggaggaaat
      301 gtaaaacttg aaggtacagc agtatagtga catttcactc tataaagctg ccaatatttt
      361 aatcctgcac gtaaatcatt ttcatcagtt caattccata tcttaatttg tgtagcaaac
      421 gaagtattgg attgcattat gtttaataat taagaatgtg atatcaattt ccatatattt
      481 taagttcctg gccaagaaat agagtcaaca tttttagttt caatttcttt gctgtacaaa
      541 ataagaatga ttaaggatta ggtctaattt tcatgctgtg atcaaccaaa ctttctttta
      601 tagaaccttt agtttctttg cctaagtgat gtcttcgtca atgttcatgt tgtattcatt
      661 tagagtgatg attgatatgg taatagatac
//
LOCUS       KCOD01001425             428 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 159193pyr ultra-conserved element
            locus uce-3214, sequence.
ACCESSION   KCOD01001425
VERSION     KCOD01001425.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 428)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 428)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..428
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="159193pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>428
                     /note="ultra-conserved element locus uce-3214"
BASE COUNT          117 a           76 c           89 g          146 t
ORIGIN      
        1 acttgctttt cctaagcttg gagctattta tggaaattac agtattcatg tgtgagagct
       61 tcagtcaaac tatcaggatt ggtttgagag gaaaatttcg actgaaagct tgtaattcac
      121 atcgttctct tctcagcttg gcaaagttga aggttaacgt catctgttct agacatttca
      181 gattagtcac agaacttttc ttggtggttc agtgcctggt catccagtca gaggaacagt
      241 aatccatatg gaaaaattag ctcaatgtta ctagactggt gggtaatact tgagccttag
      301 ttaggactgt tcgcagcatc ttgggactct tttcttcctt gatcaatttc ttaaaatagg
      361 attcttcatc agaggctgaa aagaggagga ctgtactgaa gtatattttt tccatcacca
      421 aatctttt
//
LOCUS       KCOD01001426             272 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 159295pyr ultra-conserved element
            locus uce-1233, sequence.
ACCESSION   KCOD01001426
VERSION     KCOD01001426.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 272)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 272)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..272
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="159295pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>272
                     /note="ultra-conserved element locus uce-1233"
BASE COUNT          111 a           47 c           37 g           77 t
ORIGIN      
        1 ccccaaagaa aaataaaaga tcaaattaag tgcctctgtt ttgaacagag cacataagca
       61 ataataaata gtgactccca tagtaaaaga taaaatttca agttacgaca aacagctttc
      121 attacaggaa tagaaaaggc caataacaaa atattctgca ttgccattta caaaaaagta
      181 ttgactcaag cgggctttct ctttaatatg ctttgcatat gaaattcttt ccaatctaaa
      241 tataaagcac catttagttt ttggcaatga aa
//
LOCUS       KCOD01001427             388 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 159401pyr ultra-conserved element
            locus uce-7476, sequence.
ACCESSION   KCOD01001427
VERSION     KCOD01001427.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 388)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 388)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..388
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="159401pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>388
                     /note="ultra-conserved element locus uce-7476"
BASE COUNT          118 a           91 c           56 g          123 t
ORIGIN      
        1 acactaaaac aaaccatctt ccaacgcagg ttacgggagt ttcctgacct cttgccatcc
       61 aactttttat ctgaattcca ttcttacctc aagttctgtg gtgcttcacc aaacaaactg
      121 caaatttctc taatttgttt cagtgcagga atgacccatt tgtcatttgt gcgaagttct
      181 tctataaaac gatctatcca ctggatcttt tgtgtatctc gatccttaaa gaacagatca
      241 agtatacatg tttccaagac agacaaagtc aaacaaatac tggagttccg aagcataaaa
      301 gcataacaag tatctgaagc taccactgtg ttacaaactc cctgcactca agagtgttta
      361 aataatttgc tctctcttat ttatttcc
//
LOCUS       KCOD01001428             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 159512pyr ultra-conserved element
            locus uce-1492, sequence.
ACCESSION   KCOD01001428
VERSION     KCOD01001428.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="159512pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-1492"
BASE COUNT          148 a          126 c          127 g          201 t
ORIGIN      
        1 gagtctgtca tttctcaacc aaggtctgta ataagaacac taaaatttta acatactcta
       61 ttcacggcca tgttgaatcc catgatagtt aatttttcct gacagactcg gtcctggtaa
      121 tgaacaggta cttgtcagac ttgccacagt tgttttgggt tctctgtcag tttcagcagc
      181 tgggggtcag ggggtgtatt cagcggagac cgcgagacag acggctgtca tgtccttttc
      241 ctgcagattc aaaatggtga acagaaagcc tacgtcttga aaaacaagca gctgacaggg
      301 ccaacaaagg gggtcatcta tcttgaaata gatgtgattt ttaatgctgt aagtcttaac
      361 tttttttttg tactgctaaa gagttcagtt tcatgaaagc ttttgttcct gatttgtaga
      421 gaatttctgt cattcctcat tttctctaag ccttgatgta tgctacagaa tactcttctg
      481 ccactgcttg gcacacccac tcttttgctg ctgcttattg ctgctaatgt acagagcagc
      541 aactcttgtc tctttgtatg cttatgtgtc ctgagcttgg cagccattac tttgaaactt
      601 ag
//
LOCUS       KCOD01001429             625 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 159619pyr ultra-conserved element
            locus uce-2462, sequence.
ACCESSION   KCOD01001429
VERSION     KCOD01001429.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 625)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="159619pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>625
                     /note="ultra-conserved element locus uce-2462"
BASE COUNT          200 a           96 c          138 g          191 t
ORIGIN      
        1 gttaaggtag aggaaacagt tacgtgcttc tttgttgtca aaactggatt ggaaaatgat
       61 ctaaggtgca tcttcttgcc tgaatttata ttttaaaaga aaatgacata aagaggacga
      121 gtgtgaagtc tggcaagtca gaaattatgc ttattttaag ggtttcagtt taatggtaga
      181 gaaatgtcat gtgtaatcct tacaagcatt attttgttat cgtttttgta ggctttaaga
      241 caacagcaga aaagaagaaa tggagtctca atgatggtaa acaagactgt tcctcgtgtt
      301 gttttgacac cattaaaggt gtccgatgag cagtcggatt cgccttcagg taaatagcta
      361 aaggaccgtc tgcaagatca gctctagtca cagagccttc ctctgaatta cagaatttgg
      421 aattgctgaa ataatatttc cactgggtgg ctttgtttaa catctttatt tccttatcaa
      481 gtctcatgtc tcaagaaaga actgaaggca cacagtaaaa tgacaattgg taatagcagc
      541 agctttaaag gaatgcaaag taacattttg tttggctctg gagtaatgga ggaccacatg
      601 ctggtattca atgccataaa aagag
//
LOCUS       KCOD01001430             856 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 159727pyr ultra-conserved element
            locus uce-908, sequence.
ACCESSION   KCOD01001430
VERSION     KCOD01001430.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 856)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 856)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..856
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="159727pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>856
                     /note="ultra-conserved element locus uce-908"
BASE COUNT          286 a          142 c          145 g          283 t
ORIGIN      
        1 aagtatctat aactattaag caatcatgtt gagacatttg acaactatta ctactgctta
       61 gttatttttt atgtatttta acagtatagt tttttctact tcatgtgaac ctattttaaa
      121 aaaagacaca cagaagcata ttttattcct tattagctat tctacgatat gcatcatcat
      181 tatactatta tacaccagtt atttttagta aatcctgatt actgcttcct gaagaagaaa
      241 aaaggaggac gacagcgatt aagttatttg tttagttttt tagattcagc tgtaattgct
      301 ggtacacatc tccctgactg cacacatgaa gcaggttgaa tagaacactg aaattacctc
      361 cttcataata gtttgttttg ataatgtatt gtgtgtcgag atgatgagaa acagttgctg
      421 tcaatttgat tagccattat atttttatgt taattgccat tattgggtcc attctgttta
      481 gtgtcaccat agaagccata caatgttagc ataaataaca aattggagta aattaggaag
      541 atatattttt gccaattcat tttaattgcc cctcagtcct tccgtcggtt aacgcagctg
      601 ttgacccata ataagcgcta ggtcaatata gctgcttgtc aattcagaaa tgcaaagtgc
      661 tgtgttgctg gtaatggata tacaacaacc tttgccagcc aactgaagca aacgaatgac
      721 aactcacatg aaagaataaa gcatcagcta tagagtttag tgacctgata ttagtaggca
      781 ggctaattga aagtcactgc ttaaatggat aaagaaagta caaaaatcac tatgtaaaaa
      841 atgcacacat agacag
//
LOCUS       KCOD01001431             567 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 159837pyr ultra-conserved element
            locus uce-7963, sequence.
ACCESSION   KCOD01001431
VERSION     KCOD01001431.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 567)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 567)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..567
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="159837pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>567
                     /note="ultra-conserved element locus uce-7963"
BASE COUNT           95 a          170 c          147 g          155 t
ORIGIN      
        1 gcagcagcag tggccagggc atgggagagt tgctttggac cactctcttt ttctgaatgc
       61 ctttatctct ccttaaatta ctcccctacc gttgccctct gtctctctcc cgtgcttgcg
      121 tgcccctcgc tctggtgcca cttccacgcc cctacacctg tgttgttctt tctgccctct
      181 ctcctctgca ggggctgtta gagcctctag tattttcccg atcctgagtg tgattctgct
      241 tttcatgggt ggactctgca ttgcagccag cgagttctac aaaacccgac acaacatcat
      301 ccttagtgcc ggcatcttct tcgtgtctgc aggtaaacgg gctccaggcg ttggggggct
      361 gcccagcctc tgcaggggcg cagttgattt cccagccctg acaagcttta ttcggggtga
      421 aagcagtgtc acaaggatgc ctctgcctgc tcgcccagca gtttcctact gctgatggag
      481 ggagagtgtt tccctaatct gacatctctc agggaccagc caggagtgca gtccagggaa
      541 gcgcaggcac atgaggaggg ttttgcc
//
LOCUS       KCOD01001432             707 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 159945pyr ultra-conserved element
            locus uce-2273, sequence.
ACCESSION   KCOD01001432
VERSION     KCOD01001432.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 707)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 707)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="159945pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>707
                     /note="ultra-conserved element locus uce-2273"
BASE COUNT          207 a          132 c          193 g          175 t
ORIGIN      
        1 gccagtaacg ctgtttgcac ctccaactac accaaagagc aggaaaggct cagtagggac
       61 attgatgaca tgtaacccgt gcaaggcaat aggtacgtga gtgtgcagtg tacaggggtg
      121 gaatcaaaaa gcagcagcta taaacccctc tttggacacc atggtgattg ttactgcata
      181 atgacgatga tgcacatcag aaggatttat ccagataaaa tctgcagacg ttttaatcag
      241 taccaagata gatcttgttt atatcaagaa cctttttaat gcagcattgc tggtttggtc
      301 cgacatcatc tcctgcagtg tgtggagaca ggccaggagt atgaaggcta cagagcagag
      361 caggaagaaa gtcaactgtg aaattggtaa ttttatgagt ttcacggggg gttttgttgt
      421 tagacacaat gcatttggaa cagagtgccc ggggtaatac catccacata gtgtccattt
      481 gtcagctata ggtaacgata tctttaacct agagttacaa agggaatccg aaagtagggt
      541 ttaactggct aagggtggag atgtgcccat cacagaaggg tcatgaggta ttactgccac
      601 attgagtctg gggagcccat cagaaactga ggcgtggctt gtccttgagg aggggtggga
      661 aaaattagct catttttcag cagcccagca gagtgtgcag ggaggag
//
LOCUS       KCOD01001433             787 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 160059pyr ultra-conserved element
            locus uce-5498, sequence.
ACCESSION   KCOD01001433
VERSION     KCOD01001433.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 787)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 787)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..787
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="160059pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>787
                     /note="ultra-conserved element locus uce-5498"
BASE COUNT          212 a          189 c          196 g          190 t
ORIGIN      
        1 tgtttcaaac ctgtgtgagt cctgaagtgg tccttcatgg cagaggccgt gaggaaagaa
       61 taatggcagg tgggccaggt gcacttgaac ggcttctctc ctgtgtgcag cttcatgtgg
      121 ttcttcagcg cccacttctc cgtgaagctc ctgtcacaca ggtgacatgt aaatttcctg
      181 ggtaggcaag aggaggaatt agcagcccgc acatgcacaa aagcgaagga gcgtggtttt
      241 aacccaaagc atggcaaatg catagacttt cgtgaagaga attgcagacc gagtctgtca
      301 tgtctgtata accaggcatt gatttttctg tcgaggcctg gcacttcagc catttattct
      361 ctgctttgcg gttgggccca acgggtttga aaaattctgt tacagtccag tcacccctga
      421 ggcaaatgtg agaatagatt tcacctgtgc aggcccacac cacttatcca gggcacgggc
      481 tgtcagagca aaggctaaat gaaaagctat ccatactaaa ctactcagac aatcacactg
      541 ctcggtgcca tgccgccgcc gcgctggctt gaaatactac ttgtaataac gttgctgcga
      601 taataaacaa aaactgcttc ggaacgaaaa tgcagttttt taagaggggc tgtagcgatg
      661 caagtaagtg ttttctgata atgcattctc ctccccagcg ctaccacagg aaacataaaa
      721 gatcccagtc gtggcaagga aggagagaaa aggcaattcg ttctgctgag cagagccacc
      781 tcacctc
//
LOCUS       KCOD01001434             645 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 160169pyr ultra-conserved element
            locus uce-6515, sequence.
ACCESSION   KCOD01001434
VERSION     KCOD01001434.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 645)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 645)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..645
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="160169pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>645
                     /note="ultra-conserved element locus uce-6515"
BASE COUNT          217 a          118 c          122 g          188 t
ORIGIN      
        1 tcctcacctt tcatcaaaat aagaggtttc ttcatcaaga aaaagtattc tgaaatggta
       61 gcctggttca acgctacagg cagatagctt tgcgttggag tgctttaata tgtttttata
      121 ttgcatataa agcatgcaaa cataaaccag tttgttgaaa actaccctct ttgtggaagc
      181 tggctgtaat tctgaacaag ttttcaattt tcacactgct gctagggtaa aacattttaa
      241 agagtttaat ttttacagtg gcttcaatga cacgagatta tctaacaaag taatggttaa
      301 tcaatagagg gtttagttgt caggtgaaac atataacaca ctaaaaggga ttgattgcaa
      361 gactcctcct tatttactgg gaggtatata tttaaaatga cacaaacttg ttaccaagct
      421 gcattccttt aaccttgcaa aagccgtttg agaagagtgt taagcagccc tatagccaaa
      481 caagctctaa taaaaaagaa atatatggga gcaccaaatc atgtcagaag caggggaacc
      541 acaaagctgt attcactctc agccaaaggc ttaaaatgcc acagaggcac tagactatgg
      601 ttcactaaag atagagctgt atctgatctc attccgtaag tgtct
//
LOCUS       KCOD01001435             718 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 160277pyr ultra-conserved element
            locus uce-5919, sequence.
ACCESSION   KCOD01001435
VERSION     KCOD01001435.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 718)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="160277pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>718
                     /note="ultra-conserved element locus uce-5919"
BASE COUNT          183 a          137 c          145 g          253 t
ORIGIN      
        1 ctctcttcat gagaatggtt tctccctgtg ggagaggaat taacattcct gggatatgct
       61 gccactgcat ttatttgggg ccctcactct ccttgtggag tccagtatac caagggtttg
      121 ttacggttta attcaaaagt gacaacttcc aagaggtgcc acatgggcac tggtcctagt
      181 ttttaattcc aagttttctt gttcatcctt gattaataga atttcactaa ataataaact
      241 cttctctctg ttatttgtgt gtgtgatttt tgtagtggag aaggcaaatg caaagccctt
      301 ccagatgact gaaaaacagt gggtcctctg cagctacagg ggattctagc cattaactaa
      361 aggccagcaa gcactcaagt ccccaagtgt tttcctggtg taaccacttg ttaactacat
      421 tttctcttct tctttttatt tttacatttt agggtgttac agtaatttga aaggcaatga
      481 gcagggtttt tggaacttac cttaaaagca aagtgctgag aagacacctc ttcttacaga
      541 agtcttatta aactcttcta gacttgcttt agaagtaact gatttccatt gtacttgtct
      601 tgatttactt ctgggaaagg ttgaatttaa tacagtgcta aatttggtac atggcctaat
      661 ctgtcatgct ggagctgtgg ggagctgttt atcttatctt tgtattcctt aagcttaa
//
LOCUS       KCOD01001436             530 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 160388pyr ultra-conserved element
            locus uce-548, sequence.
ACCESSION   KCOD01001436
VERSION     KCOD01001436.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 530)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 530)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="160388pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>530
                     /note="ultra-conserved element locus uce-548"
BASE COUNT          175 a           89 c           85 g          181 t
ORIGIN      
        1 ttgtggtgtt tgtctttgca gtgaactgag gagaagggaa ggcaggaggc ttgggaataa
       61 cttttcacag cttcagcttt tgtttacctc taattgtcaa gctgttattt ctggaaaaga
      121 tgcaagatgc caccttcaac caatatttct tttgggcatt tattaattat aaccacaaaa
      181 gcatgcatca atctatcaca aacttctatt gttccttctt taagcctacc ttaactccat
      241 tattgaaact ttaattaaag cagaaatgaa acaaaaatgt tatgcttctt gcattttaaa
      301 aaagcatact tgtataatgg ttacatgtct aaattagcta aattaacacc atatggtagg
      361 caaagtatat aaagcctttt aaagctgaca gctaaagtga ttaaagaaag tctacagtct
      421 tccacttaca gcttaaatca catctgtgca ctttctatgt taattgcagt acatgcagaa
      481 gtggataata aagaaattcc actttattgg ttgtaattta tatttattac
//
LOCUS       KCOD01001437             707 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 160499pyr ultra-conserved element
            locus uce-6604, sequence.
ACCESSION   KCOD01001437
VERSION     KCOD01001437.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 707)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 707)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="160499pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>707
                     /note="ultra-conserved element locus uce-6604"
BASE COUNT          222 a          114 c          135 g          236 t
ORIGIN      
        1 gaccgattta gtatttcaac agatttacat attctattaa tgaaataaaa gcattttccc
       61 ttcttttttt aaaaagcaat atacttttaa aagggtaatg caatcacaac cattatgtca
      121 atgaaaatta cacgctgggt ttatctctgt aggtatctgt caaatacaaa gcgtgcacaa
      181 catctttgga gtaataatga tgttttatca ttttaattac aaacactttg aaaaaaatcc
      241 ctaaagtgta ccaattgggg tggtctgaat taacagtagc ttgatagccc aagggtagca
      301 aaaatagatt gagctaccaa atttcatagt agttatagca gctgtcttct tgcctcaggg
      361 aacctgggta tttaacaaag cagacagctt ggcattggca tctgataagt aatgtgggtt
      421 ttgttggaca gaattctatt gtttcactgt ttggttcgga attcgagagc tatggcatca
      481 tttagttttt atagtcagct tctgtgtatt cacttacagg tattgtaaaa ggttattttc
      541 ccacttatca cttgctccaa gtagggaata ttgtcttgaa acgagcaatg aaacatgaca
      601 ggatttaaat gtcagggtca gttgccttcc catttctgtg ccaaaatttt gttgaaccaa
      661 ctgcgtaagt ttttctaatt gggcagaaaa gtgaataaag tgaaagc
//
LOCUS       KCOD01001438             274 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 160606pyr ultra-conserved element
            locus uce-1891, sequence.
ACCESSION   KCOD01001438
VERSION     KCOD01001438.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 274)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 274)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..274
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="160606pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>274
                     /note="ultra-conserved element locus uce-1891"
BASE COUNT           84 a           54 c           50 g           86 t
ORIGIN      
        1 ttaagctcag gcagttttgc tgctaattac acacaacttc tctggagtat cggatattca
       61 gatccatttt atgaatatgg tagggagaat aacaactgta aaacaaagca ctgtgcatgt
      121 aagtgactgt tagcgtgtat ttcagaaggg ataaatgctc accatatggt acaattactg
      181 tgtccaagtt ttcaaattag cttctctcat cctccttatt actgtcttta aaaagagagg
      241 cccaacatga tttatctact ctgcagcaga actc
//
LOCUS       KCOD01001439             573 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 160714pyr ultra-conserved element
            locus uce-3761, sequence.
ACCESSION   KCOD01001439
VERSION     KCOD01001439.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 573)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 573)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..573
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="160714pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>573
                     /note="ultra-conserved element locus uce-3761"
BASE COUNT          181 a          100 c          113 g          179 t
ORIGIN      
        1 aggggttaaa ggctaggaaa ctcaacatta aacagagtgc cagcaagggt taagacaagt
       61 gacaaggaca acgggactct ccttctgtgc tacatatgta gatgggtatt aaggacatgc
      121 atctctcctc atctaaaatc atgaattttt atgaagtaag tcctgcattc ccataattca
      181 gtagggtgca ctttgcagac cctaaagtgc tgtcactaca gaaggtttca ttgcttgcac
      241 ctgctaaaac atttgaggta tttgagaggc agtgaaacac atttgctttt cattttatct
      301 gactttgaaa atctttgaag tgtttaatag tagtccagaa aagatttctg cctcttaatc
      361 atttacttgt agggcacatt ctccactggt agcctgtcag gcagaaaacg agtttagccc
      421 agttttatta agtgccacat gccgagtcag tgttcattaa aggtgtttta aggtttgaat
      481 tatgtaattt atgagaaaaa gaaatacaaa attccattgt tttattaata tgcagcacag
      541 gatatactgc taataacata ctttttaaac aga
//
LOCUS       KCOD01001440             731 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 160827pyr ultra-conserved element
            locus uce-372, sequence.
ACCESSION   KCOD01001440
VERSION     KCOD01001440.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 731)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 731)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..731
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="160827pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>731
                     /note="ultra-conserved element locus uce-372"
BASE COUNT          210 a          153 c          112 g          256 t
ORIGIN      
        1 ttttcctttt ggctattgtg actactttat ttaatttgcc accttattta gctactcacc
       61 tggaagacac aactgcagtt tttccacaac tgttgtaata ttccgctgtt gaactctaca
      121 tcggatgatt tcctctgttt gggctatcac cttaaaggta aaatcacact taaataaatt
      181 tattttgcta caaaaattca taatgcccat gtaggaagca ccattttctc acctctttcc
      241 cagcatcctg aagccttcgg ttggtatcag taacttggac cttaaaaata atttcacctt
      301 tgttagacaa atatgcatat attgccctga tgtgactgct cacccttgta atcagatcat
      361 gcttcctgag aaacttagaa caaagaaatg caaattcaaa ttaactctac agcttgaact
      421 tgaacttttg atcgcaaagg gcttttgtta acttcaatta cttatgacag ttctttctaa
      481 cagattctgt ggcaaacttc tcaaatttac ttgggatttt tgaactttcc ttgtttctgt
      541 aggtctgtca aacaattcaa atcattgacc caattgacca ctggtccctt tttgataacc
      601 tcaatgagct ctatgggcca ttcattgtct gtaagaaatg gtgattgcat tttatggtaa
      661 ttaaacattc atactttgct gaatgcaaac actgggtggt tgattaacat caaacgtgga
      721 aatctccaaa c
//
LOCUS       KCOD01001441             533 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 160938pyr ultra-conserved element
            locus uce-2674, sequence.
ACCESSION   KCOD01001441
VERSION     KCOD01001441.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 533)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 533)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..533
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="160938pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>533
                     /note="ultra-conserved element locus uce-2674"
BASE COUNT          149 a          111 c           86 g          187 t
ORIGIN      
        1 agttaggaca atagatttag ctcaacccac ttcttgcaca ttggatgaaa tctggagtgt
       61 gtatctttac atctacctga tccttatcta cccctaaata ttttacctat gctttgtgat
      121 tacaaagctt tctctcagct tttgtaattc atttgtgcct tctagcagtc atgagtcatg
      181 ggtcttttac acttgtcaag tacacctaat ccctaccctt catggcccag aaatcctaaa
      241 gatggctgaa catgtaattg ccttgaagtg taaaatattt cccacattat ttattatagc
      301 attgcctgct agcacctcta tagttaaggt tgtgtcagca tttttattat aagcccctat
      361 tttcagctgt aaaaaagtgc tgcaggctgg aaccaggaat gcaagtgatt ttatatttta
      421 ctgtttttta aaataaaatt accttggacc ttttcaagtt attccatctg tagtcaacaa
      481 cccacacagg tctacttaca gctgtatatg catgtgtata aggaagatct agc
//
LOCUS       KCOD01001442             777 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 161044pyr ultra-conserved element
            locus uce-7028, sequence.
ACCESSION   KCOD01001442
VERSION     KCOD01001442.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 777)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 777)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..777
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="161044pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>777
                     /note="ultra-conserved element locus uce-7028"
BASE COUNT          241 a          137 c          155 g          244 t
ORIGIN      
        1 agatatagaa aataagcaac aatcctcgct gcactgaact ttgcaattta acacttagtt
       61 tatatttaat taattcagaa agtgaagaac ttcaaaactg gctttgaaca ggctgtttgt
      121 taaaaaaaat agaacattta tgttttcact gttgtttttt caaatgtgat gtgacaaagt
      181 gaaaaagctg catgaaagtg tggttctttg tgtgatggaa gtgggatgca cctactagtc
      241 tcacatcatc aaagaaacag acatatatct ataatttatg ctttgcttta agcttccgct
      301 gatccgatgt ggctttttca gacaacacag gcagccctgg cacagcctgt caatcatctg
      361 ggcatgctca aattgtagac cattagtagg agagacagca aagtttcttt aatgacgctt
      421 ttatatgtgg tgtgttggca gtgaaacaga gaagaattga cttgatcaat gcattagtct
      481 aatcatgggg ttcctgctct taatttcttt tgtcggtaat ttccatactc aagcagcatt
      541 caggatactt gtaaagacac acttagagca ctgcatgatg tatgcagtca cctataaagc
      601 atgtcttgga tacagctctg taggaaacaa ggaagaagga tagggggcca gtcagatttt
      661 tctttgagct acttttcatg ttgtgagaat tacagtacct tagtcgaaaa gaggacattt
      721 ccatctttta tatatatatc ttccaaaacc acaccagatg acagcatgtt cgattct
//
LOCUS       KCOD01001443             531 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 161154pyr ultra-conserved element
            locus uce-4519, sequence.
ACCESSION   KCOD01001443
VERSION     KCOD01001443.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 531)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 531)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..531
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="161154pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>531
                     /note="ultra-conserved element locus uce-4519"
BASE COUNT          163 a           95 c          110 g          163 t
ORIGIN      
        1 gataaaattg aattaaatga acctgcctct aagaaaagat actgaatagc tgagtagcgc
       61 attattcaat gaatggaaaa cggggaggct ggctgaaact gctgggaaat ggttttaaca
      121 ttctatcggg ctaaagagca attctgtgaa atcactgtat ttgtttcccc cctacctccc
      181 cgccctcatt ttttaaatag cagtgctctt catactgtca gaattcagtg ttgtgacacc
      241 cctactcaaa agttatgaca gcagtgtaat gacagctact gcctcttgag aatcaatcag
      301 gcaattaatt ttgtaaatga aatgctgatt atacaaagct tcacatgaga ggcccagtga
      361 ttaaaatcaa tttaacaaat tgtttcaggt gggacttgat taataatttg ccataaatgc
      421 tgaggatata tgaccagcat acctttgtgt gtgtgtgtgt gttaatatct cctggagtgg
      481 aaaaaatctg cagctaactg tatgtacttt tggcttgtga cctagatgtg a
//
LOCUS       KCOD01001444             619 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 161371pyr ultra-conserved element
            locus uce-97, sequence.
ACCESSION   KCOD01001444
VERSION     KCOD01001444.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 619)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 619)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..619
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="161371pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>619
                     /note="ultra-conserved element locus uce-97"
BASE COUNT          205 a          103 c          121 g          190 t
ORIGIN      
        1 aaaatacatg tgctgaccct tttttaccat atacctagca gagccaaact aaatgaagct
       61 gaggtctctg tccagcattt ggaagccagt taaaatagga aatcagtgtt tctctaaata
      121 cacagagtat attaccttag tcataaaatt ggggactttc aaatctaatt tgttcagcac
      181 tagcgctgtt gaaggctggg aagtgttcca gaggaaatca cctccacgca aacagagatt
      241 agcagctccc cattgcagac atatggaaat gattgcctat aatctccggt aattgtggct
      301 gtattacatt caaatcctgt tttcaatttt cttaaacttc tagactgatt gtgttattaa
      361 atcatgctgg ctgatgtgtt taataaggac ctattaaatg tttataaaat tagggaaata
      421 aatacgggct tttagtcaga ttgtgtgatg gatctggtaa cctattgtta aaagtagtgc
      481 tggtaaaaat gtgtctaaaa aaaatagact taaaggctcc ctttaaaata agaaacccag
      541 tattcaatac agatatccaa aatgatcttt gcagatgttt ggagggctaa attagaaaga
      601 tctcactgag ctgtgggaa
//
LOCUS       KCOD01001445             549 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 161478pyr ultra-conserved element
            locus uce-177, sequence.
ACCESSION   KCOD01001445
VERSION     KCOD01001445.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 549)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 549)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..549
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="161478pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>549
                     /note="ultra-conserved element locus uce-177"
BASE COUNT          189 a          103 c           88 g          169 t
ORIGIN      
        1 atcaaattga agatatgttt ttgcacagct tttatttagg aaaaatcagc aagaaatgca
       61 tctttctgta ttttccattt attagaagtc tcctttcatc caagaaatat gagacctgaa
      121 ataaattgta ccatcctgca ttcaaatcct tgccagtgct aggcagtatg ctaatgaaaa
      181 caggttgata aatgactccc tgatattttc cagacatttt tctctcagaa gtgctctaaa
      241 ctgatgtagc tcaaagagaa taaggcgcat taagtcatta tatcaatttt tgttacccag
      301 atacttcagt cccagttaag agctgacagc caatataaaa caaggcaagg gcatcatacg
      361 actccatcga tcaaatcttg tcgtagatag attgcctatt acacaaatag aaccagcaga
      421 ttcagtttgt agttttatgc tctccaatta aaggataaca gggtactttc ccataaatct
      481 gctaattgca actgaattaa tttaacaaat tttgccaagc acagaaaaaa gtgattggtt
      541 aagctaata
//
LOCUS       KCOD01001446             601 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 161586pyr ultra-conserved element
            locus uce-2315, sequence.
ACCESSION   KCOD01001446
VERSION     KCOD01001446.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 601)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="161586pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>601
                     /note="ultra-conserved element locus uce-2315"
BASE COUNT          168 a          114 c          144 g          175 t
ORIGIN      
        1 gggaacttgt caatggaaga aaaagaactg taatcgcaca tttacatatg ctcctaattg
       61 ttgatttggg gattttctat gaatatggct tcacaaaaca gatgctgttt aagaaaaggg
      121 ggaacataat tttgtgggca atgaattaag tgtttttgtg gccctctcat ccgtagctag
      181 gagcagtttg tggaccgcgt ctgtgaacgc cgctcataat tgtttttcac acataagtta
      241 tgcaaatgag cttttatggc aactggcata acaattagca tcctccagca atattttagc
      301 aggttaattg caaaatttct aaattgtaca tctgacttgt taattaggca tgacagaggt
      361 ggtaaaatag ttatcttcag gcagtggcag ccaggagctg cttgaaatgc aaagagcaag
      421 gattgattgg atttgagggt tacaattgtg ggagcactgc tgttgtcaag tgccgctgag
      481 cagctctgct ccatcggctg cctcagagca agaaccacgt cggtgctgag aggatcctgc
      541 cagttacaaa tctgctttat ttaactctga aactctccaa atcccggctc tgggaagtgc
      601 c
//
LOCUS       KCOD01001447             290 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 161690pyr ultra-conserved element
            locus uce-1603, sequence.
ACCESSION   KCOD01001447
VERSION     KCOD01001447.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 290)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 290)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..290
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="161690pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>290
                     /note="ultra-conserved element locus uce-1603"
BASE COUNT           74 a           46 c           78 g           92 t
ORIGIN      
        1 ggagttttaa aaatcccata ataaacgccg agtgaaatgt atgatttaat gcggggcggc
       61 tgctattatg tgctattagc aaatcggggt tgagagtgaa tctttatcac ggggcgcgcg
      121 cgggccgggg ctgcctttgc tgctgctatt gatttgtagc cgcttgtcat aatgacatgg
      181 ggaagcaatg aatggaagat gtgcttttga taggattgaa ggggtgcaaa aaaaaattca
      241 gcaagttttc tatctcttct gcctgattag atttttttct tcttttaaga
//
LOCUS       KCOD01001448             589 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 161796pyr ultra-conserved element
            locus uce-1531, sequence.
ACCESSION   KCOD01001448
VERSION     KCOD01001448.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 589)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 589)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..589
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="161796pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>589
                     /note="ultra-conserved element locus uce-1531"
BASE COUNT          171 a          128 c          104 g          186 t
ORIGIN      
        1 tcgtgattac tgtgcccata taatcaaaga tcgcttcata aaatgtattc cctaaaggga
       61 cgaattccct gctcctaact ggatgtcagt cagagggatc agcaccccca gggatctgga
      121 gtctttgctt gcccttttca ttaccgtgtt gttagcattg tgttacttca tattcttctc
      181 aatgcaaatg agtaggtaat catgtgtaaa tcgtgccctc cagaaggcac atgtagtgag
      241 ttttttcccc caaacctacc acagggattt ctcacatgga acataattac atctctgcca
      301 tatgggctca tttatattct attacaggtt aagctaatac gactcagaaa tatgcttacc
      361 tcaaagtatt ttgagcactg tcaaaacact tgtcatttct ttcttgcctg tttgattgtg
      421 aatgacttta tatttattta gagatccata gtgccaagta acttcagaaa aataaaatca
      481 gaccagtctg tgttgcccag tgtccaaaaa aaattctctc atgacatcct tcttcagcaa
      541 tggcacatag gtgggtgaac aatgaaacag taagacatat ttacctgca
//
LOCUS       KCOD01001449             545 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 161906pyr ultra-conserved element
            locus uce-5530, sequence.
ACCESSION   KCOD01001449
VERSION     KCOD01001449.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 545)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 545)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..545
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="161906pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>545
                     /note="ultra-conserved element locus uce-5530"
BASE COUNT          175 a           90 c          107 g          173 t
ORIGIN      
        1 agaaggctgt atacagaact gtgtgctctt tagaacaaaa gtgctgatgg agctgtggaa
       61 acgaggcctc taagtttcta agaagcaaaa actttggcat tttgtgaaca atagaggtgt
      121 tcacagcagt ttcttccaaa ctgtatggca cttttcagct aggattgtgt gcagtttatg
      181 tcaaaacatt tcagtgaaga aatacaaata cagactaatg tttgacttct tttgttgtgt
      241 tgaactggag ccagagaaag tatttatata taaatccact tgtgaaatgc ataaccctct
      301 caatgtgact tatatgtctg agacttacag agaattcaag ctgattgaca gaaaatactg
      361 ctcttatagt gtcagaatat attatcatgc tcatacagaa atacttttca ccagtgtacg
      421 tgttcattgt cattattttc tggtttactg gagacgtcca ggtactgaaa tacccaattt
      481 gctaggacct aaagctacca aaaaaatata ttagacaacc agatggataa tttagcttgt
      541 tggtt
//
LOCUS       KCOD01001450             414 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 162017pyr ultra-conserved element
            locus uce-6973, sequence.
ACCESSION   KCOD01001450
VERSION     KCOD01001450.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 414)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 414)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..414
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="162017pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>414
                     /note="ultra-conserved element locus uce-6973"
BASE COUNT          130 a           87 c           71 g          126 t
ORIGIN      
        1 atgaatctct tgtcaattta tatatctgta attttcatct gccctttatt ctgcatgtat
       61 atttatatat gaccacaaac ctgcagtgca gtggaaagct agatttaaat attttcagac
      121 cgactgtacc catcatttgc attccactga ctcattcaga gcaaagacat ctgagcagaa
      181 atacagcaga taaaagagaa accattaatc cagggaagat tactggcaca gaatctttat
      241 cctgtatcct ccctgaaatg agacaaagat cttactatgt acatccctct ggcttagctt
      301 cagaaagtaa gcaatacagt agtgtagaca tggtactttt taaaggcaca ttacactggt
      361 ctgaaacttc agtcttctgg cagagctcag tggttgcttt cagaagactc ttca
//
LOCUS       KCOD01001451             652 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 162127pyr ultra-conserved element
            locus uce-3831, sequence.
ACCESSION   KCOD01001451
VERSION     KCOD01001451.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 652)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 652)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..652
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="162127pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>652
                     /note="ultra-conserved element locus uce-3831"
BASE COUNT          202 a          125 c          130 g          195 t
ORIGIN      
        1 ttgtagtgcc gcatgaaata tgtaatatta ggatacccaa gtcaagctca tgtctcattg
       61 acatctttgt cttttaaatg gaaagcaagg ctggagggga aaaagttggt taaaatacag
      121 aacttctgaa gtgcttaaac cagctaatgg tactagatct cattttagat tccagggatg
      181 aaaaagaaaa aaatcagact tacatccctg actgggtgtt ttccactata ggccctacat
      241 gtttatgtag agggtattgc gaacgtttgg agggatttgg gagtttcaaa aggaagaagt
      301 ttatacatta gtgctgcaag ttgcaaaaca ctgttgatat tcaaatgttt attgtgtaaa
      361 atctgggata agcttcagca tgagagctcc tttaagtgcc tacaactatt gctaattccc
      421 ctcagcattg aggcttgcac aaaggcctta atccaattcc actttttttt ttcagaaagc
      481 ctatgctatt ttctctcaca taaactaaca acactatccc atcacactgc agaatgggtc
      541 aaagaaaaag ggctctgtgt ttatacttca ccaacacttg gtgtttcttg gccaagtatg
      601 gcaagaaact ttaagtgtgt cccccaggcc ccatgccatc tttagaaaga aa
//
LOCUS       KCOD01001452             691 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 162238pyr ultra-conserved element
            locus uce-1633, sequence.
ACCESSION   KCOD01001452
VERSION     KCOD01001452.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 691)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 691)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..691
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="162238pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>691
                     /note="ultra-conserved element locus uce-1633"
BASE COUNT          210 a          138 c          103 g          240 t
ORIGIN      
        1 gtataaatta aacattcttt gataataata tgcaatgaca gcgtaatcat atgctaacat
       61 ttaatcacct tttatataca atattaccct gattcttctt taaattttta tgttgtatat
      121 tgctgtacat ttttcttgct gattgattct ctttattact actgatttta tttatgccgc
      181 taattttttt tcctaagcat atattttaat gagtagtttt gttcagctaa cgtctacaga
      241 ataagagaat tcagcacacc tgcctaaata agatgcttga gatcactgag gaaagaaatt
      301 gacattttac tttaccctca gcatggagcc aggggcaaag tttgatctga aaacttgcaa
      361 attaaccaaa actgtcactc aggagttatg ggcctgaatg ctgcaaaata tgttctttga
      421 agtcctcatt tcagcaaaat tattaaaaac tttatatcta attaaaattg taactgcatt
      481 cccatttttc aaaatctcta tatcctcggg gccaattggg atgagtgaat tcgcaccctc
      541 ctctctgcag cacactgaac tgctcctaca gcaatatcag atcattacca tctccccagc
      601 tgagagggag cagccattat catgcagcat tattaatctt cttgtcttat caacttgcaa
      661 atcacaagcc attgagcctt atggcatggt t
//
LOCUS       KCOD01001453             711 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 162349pyr ultra-conserved element
            locus uce-5464, sequence.
ACCESSION   KCOD01001453
VERSION     KCOD01001453.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 711)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 711)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..711
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="162349pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>711
                     /note="ultra-conserved element locus uce-5464"
BASE COUNT          199 a          167 c          131 g          214 t
ORIGIN      
        1 attcaaatag aaaagcaaaa gggaagaaaa tgctttagat gtgctctttt gattttttcc
       61 aatcttgcct gaataaaatg gaataggaga tcaagaacac tcaattaatt tcaacactgg
      121 gtgtcagagg gaaaaggaga gggaggaggg gggaatatta tagatgcaca acacttaaca
      181 aatgcataga ttgaaagaag gaaatataaa aaaccgtgtc tatattttat tgcactcagt
      241 aagcttttca cttgtattta tagctgcaat tatatctcaa tgaggtttgt ctacagtgtt
      301 ggcttcacgc taattttccc cctcactgca ttcttggaat agcctcggac tgtttatgaa
      361 ccagacatat tgacctcatt tacagctagc agtttaaatc cataattttt ccacccacaa
      421 tccctctttg acattccggc aatgcggccg gctcactgag actgaactaa aagtctcaca
      481 cttcattgaa caccattatg cggctttatg cttataagcc tgtttccctc agctgccttt
      541 cagctttgct ggagatccgt ttggccacag gccggcagtg attaactgga agaatccaat
      601 aaatcagcct gtcagccagc aggctctcct cactgtgtct acaaatcgac atttggattt
      661 gcactctctc ctcccccttt gctccttcct tccctcctct ctgcctctct t
//
LOCUS       KCOD01001454             633 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 162458pyr ultra-conserved element
            locus uce-3465, sequence.
ACCESSION   KCOD01001454
VERSION     KCOD01001454.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 633)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 633)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="162458pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>633
                     /note="ultra-conserved element locus uce-3465"
BASE COUNT          203 a          146 c          116 g          168 t
ORIGIN      
        1 ttcagtttac ttagctcttt aaataaacat gggctattgg aaatgttata caacaacgcc
       61 agccccctaa gtgtagctcc tactcctgtc attcctgcag atgagttaca aatctacaag
      121 aacttgtctg ctccatgctt gcagccacca ctaaacttaa attagtaact acgtaggcct
      181 cttccaaggc atatcagaga ccagctgtgc aaggacctgt caccttcttg tcagtgaaag
      241 ttttctgtcc aaagaacttt cgtcatcccc cattcctcaa gtagctggat gtcacttgaa
      301 gagacagctg aagtcacttg caatgaatgg tctcaaatca gagctcactg cccttgtcac
      361 agaaagtctc accccgcagc taaaactgtc actgatcatg tttagatatg tacactgagg
      421 tatcagatta gaaaagagta tgcacgagat gggagtttaa aagaggccaa gttgcaagga
      481 aaatcttaat agggagaatc gaaggcttga agggttagcc ctttcccaaa cccaatttat
      541 atttcccatc aaatccaata aaaaatatct agcttctaaa aacggcatgt gtccaaccaa
      601 catattcaag aagaagctaa aactttaagt agt
//
LOCUS       KCOD01001455             569 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 162568pyr ultra-conserved element
            locus uce-4133, sequence.
ACCESSION   KCOD01001455
VERSION     KCOD01001455.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 569)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 569)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..569
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="162568pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>569
                     /note="ultra-conserved element locus uce-4133"
BASE COUNT          119 a          161 c           96 g          193 t
ORIGIN      
        1 gtggacagac cccgacccgg ccggctcctg taattatctc ctgcaaggca aaacaattag
       61 gagtttctgc tctcccctcc ctcccttccc ccttcctctt cactgttctt ggcaggttaa
      121 ttaaactcag aaaatatccc cccccctcct aagcatgaga ctttttctct ttatatttgt
      181 atttaattaa ttcctgcaaa ggctctgact atattttttt ggtataattt ctttctttgt
      241 ctctcccatt gttaatcctt gcatattcag tttttctcct cccttttccc ctagatttga
      301 aattctatta ccatttcaga aggcaggcgt ttgaagagaa aattgaatac ccgtccagtc
      361 ttgataagaa gggacatttg gtactaacgg taatttgtga agcagatttc cccacacccc
      421 gttccccacc tttctctcca tgtttgctgt ggatgatgcg cttttgcagc ctttatatcc
      481 ctggattact gcgtcaggca gcagcgtggg tgacatgctg tgtctgacac ctcccatacg
      541 ccttcacacc cctcctcttt ttgctcagg
//
LOCUS       KCOD01001456             673 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 162678pyr ultra-conserved element
            locus uce-5804, sequence.
ACCESSION   KCOD01001456
VERSION     KCOD01001456.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 673)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 673)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..673
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="162678pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>673
                     /note="ultra-conserved element locus uce-5804"
BASE COUNT          201 a          134 c          119 g          219 t
ORIGIN      
        1 ctttctctaa gaaagaggaa agaatggggt ggggaaagtc cagtactcca aaataatggt
       61 tgaactggaa gtcttcccat tataaattaa acactgacat gttgaagact agctgtatta
      121 tttttccttg ttgcccctaa tagatagttt ggccccaccc atctgattgc attgctttgc
      181 ttaagttaag tttgatcact ttccaagtac tggctgcaaa ggtatcaata tttcatcagg
      241 tctttgttcg gcactggttt tagcttttct taatggtgca ctttaccagg cagctttttc
      301 atacatcatt aaacagcagc tatagcactt gtgccctgtt tctgatttac cgtagatagt
      361 aatgtttaag atcacattaa acaccacaca tgctctcagc tatttgagca acatcagagt
      421 aatgaacagt caatagtctt actaaattag taccctttgg agctcttctt actgaatcaa
      481 ataagtatcc ctggtcctct ggagaaggca attctaatgt gaaataatga atttagtgtc
      541 taatcttttc ccttctgaca ttcaagagta aattacataa attatgtaaa atagatctaa
      601 tacttccagc agtcctgtaa gacactgctg aataattaca ctgactggga tgccaaggtc
      661 cagttgcaca cta
//
LOCUS       KCOD01001457             322 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 162788pyr ultra-conserved element
            locus uce-63, sequence.
ACCESSION   KCOD01001457
VERSION     KCOD01001457.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 322)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 322)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..322
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="162788pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>322
                     /note="ultra-conserved element locus uce-63"
BASE COUNT          116 a           50 c           66 g           90 t
ORIGIN      
        1 agatctgcaa taacatttac tattattctc taaggctttg actgtgcttg acagaaacaa
       61 agtactctgg gattaatttc aagaaatggt gccaactgtg cgcaatttgc tgtaattaag
      121 acatgaaaga gtactaaata ttcagattaa aagaagcatg atggagcatg atagagaatc
      181 aaggtgtggc atcaagccaa taaagaacag tcagtcgtga atgctcaata gtgattgata
      241 tgaaactcct ataaacttgt agcatgtact taacaactgt gcagataaaa tcatggcact
      301 gtgtcttaag aaaagggctc tt
//
LOCUS       KCOD01001458             510 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 162893pyr ultra-conserved element
            locus uce-7729, sequence.
ACCESSION   KCOD01001458
VERSION     KCOD01001458.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 510)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 510)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..510
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="162893pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>510
                     /note="ultra-conserved element locus uce-7729"
BASE COUNT          156 a           97 c           95 g          162 t
ORIGIN      
        1 gacaggtctt tcatatgaag ggtttggaaa cattaacatc caatgtgttg tcaggttatt
       61 agtgctgttc tttttgctct gaacagaaag agagagcctt tcttttcctg tttccattct
      121 ttgcctgcaa tatctgtgct gcgagtgcag tctgaccact atccccagtt gtctggcatg
      181 attaattaca gcatctgtcc tgtcagaagc tataatgaag aggtcttgat aaaaattgca
      241 aattaccact ggcaacaatc ttaaactgct tatgataaaa tgaaaattaa aaacagcaag
      301 tgtcaagcct gagcagaatc ctaatcctgc taccatgctc atggaataga gatccccaaa
      361 aagttgcagc cagacttgag ggaccatgtg agtttattca taatgaattc agctttcaat
      421 atttcatcat cctcaggtac tctgtttatt atgtacaaat attgaacagc aagagattct
      481 aattataaat ttatagattt cttggagcag
//
LOCUS       KCOD01001459             593 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 163001pyr ultra-conserved element
            locus uce-6473, sequence.
ACCESSION   KCOD01001459
VERSION     KCOD01001459.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 593)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="163001pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>593
                     /note="ultra-conserved element locus uce-6473"
BASE COUNT          196 a          114 c           98 g          185 t
ORIGIN      
        1 tttaggagcg taggtttggg gtttgaggat gggacaaacc aaccatcctt ttgttttcac
       61 catccagaga ggaaactgaa gagtctctct gatataataa aacagatatt gatacctgca
      121 aaacattctg taaatctcct tcatcccagc gctttcaatt acaccaaaaa gatttttaga
      181 agctttcaac tgtggacttt tgtcttgttg aatgaacttc agctacacta aattttaagt
      241 aaatttgtga tgactgagca atatacattg gctgagctag aatccaataa cccacaggac
      301 aaattaattt tcaacaaaaa gggcagaaac ctcaagtgcc atgagtatat ggaatctcag
      361 tctatctctc tggagccatt tttgcaaatc actacagcta ttcataatct aaatcagtct
      421 cctttagcag cagaaagatc ttttttcatg acaaaacaga agatgacatt cattagtgcc
      481 taacttgcat aagctacctc aaatttattg gtgctcttat acttatctgg gtaagaattc
      541 ctttgtctac agctatagga aaattccgga tgtactactt aaaaatataa att
//
LOCUS       KCOD01001460             302 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 163102pyr ultra-conserved element
            locus uce-4404, sequence.
ACCESSION   KCOD01001460
VERSION     KCOD01001460.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 302)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 302)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..302
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="163102pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>302
                     /note="ultra-conserved element locus uce-4404"
BASE COUNT           95 a           61 c           53 g           93 t
ORIGIN      
        1 ctttagcagc ttcttcctat aatttaccaa agcacttcac aaagagaatg gtaaaataac
       61 tttgaaagtc aggttattcc tatgccttcc aacagatgtt gttctcaccg aaagcagagt
      121 tccttgaatt attaatggtt cccaacagct cagctggaaa taatttagca tttgaaagag
      181 aaaagtcact ctcattattc caagtgcaga aacatttttg gttattaaaa gtattctcga
      241 gaaatctgta caatttgttt tcctccagat gccagcagga gcaccagatc cagggtttgt
      301 gc
//
LOCUS       KCOD01001461             342 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 163202pyr ultra-conserved element
            locus uce-7386, sequence.
ACCESSION   KCOD01001461
VERSION     KCOD01001461.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 342)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 342)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..342
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="163202pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>342
                     /note="ultra-conserved element locus uce-7386"
BASE COUNT          120 a           75 c           86 g           61 t
ORIGIN      
        1 caagccttgc ttgttcaaaa gtcagggaaa agccaagccc tgggttggtc agaccaaaac
       61 aagtttccaa acacaaaagg ggaagaaaaa aagaagaaag gggaaggggg gaaaaaaaaa
      121 gaaaggaaaa caacaagaac ttgtttcaaa agaaggtctt actactttct tgcccggtgt
      181 gtcgcccaag gctgcgacaa tggcaaagta ctgaatgacc cgcttggtgt ttacagtctt
      241 accagcacca gattctccgc ttagagtaac agaaataagg gcatgaggca aaggcacaac
      301 tcatccagcc accctgccaa gtctcggaga ggctggagct ct
//
LOCUS       KCOD01001462             768 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 163307pyr ultra-conserved element
            locus uce-1242, sequence.
ACCESSION   KCOD01001462
VERSION     KCOD01001462.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 768)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 768)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..768
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="163307pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>768
                     /note="ultra-conserved element locus uce-1242"
BASE COUNT          223 a          147 c          160 g          238 t
ORIGIN      
        1 tgggtagaaa tattttcaaa tcaaagaaca attgacatat ataaaaatga tgtatgtttc
       61 ttacatagtc cacggggaga attctgcagg cttgctatga tctctacaat ttgcctccgg
      121 gcaaacgagg ctttgggata ttctattatt cctttggtct gtttatcatg gaaactgatg
      181 tacaaattga aggttctttt ggacctttcc tttcagtttc ctggatgtgc tgagaatgaa
      241 cttatcacct gtcctcacct tcagcgaagt gctttgggga aggttcagtg accaataatc
      301 aattattatt gagaagcaat caattgctaa tctccataat tatgcacatc taaacactat
      361 gaacaagaaa gagaaacaaa gctgcactcc aagcattgcc ttgttagcag tattttgtta
      421 acacaggctc taaaaaaagc tgccgcagct ggtagcacaa atgtgtttcc agtattcagg
      481 ccatcaacgt gattcgtcgc taaatgtata gaatcagctt cttgctaaaa actacaatta
      541 caggtgatat acagattgaa atcacagggc tggtttgtcg aagaaaattg tcctaatgat
      601 gggttttcgg atcgggaatg cagctctttt cttcctctgt gatgggtact gaaggcagct
      661 gcacctgcct ctgtgctgta ttctgccgca cttaatgata tctgatgata tcattaggca
      721 aagtgttcat aaacagatgt tgagcctgtg cctaaatgct gtcagatg
//
LOCUS       KCOD01001463             635 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 163418pyr ultra-conserved element
            locus uce-1367, sequence.
ACCESSION   KCOD01001463
VERSION     KCOD01001463.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 635)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 635)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..635
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="163418pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>635
                     /note="ultra-conserved element locus uce-1367"
BASE COUNT          193 a          144 c          107 g          191 t
ORIGIN      
        1 cacttacact gccagagtca tggccctttt caaagtcagc agggtacagc tggcacaaat
       61 tcagccaaac aatcagattc ataccccttc acaagacttt taaaaatgct ctttctcaaa
      121 ccagaggttt actctggaga aaggtgtcca acacctgact gttcctatca aggagtatta
      181 cctgctcaca ttgatttgca gcaaagtatt tctcagtaag catttccact taacatttac
      241 tctcatggaa cctgtgtagt gggagatatt tacgagttgc tttcagctta aaaataaatc
      301 acctctaatt cctctaagcg aaatcaatca aaagtcttta aaaaatggac tggttgtttg
      361 gtcgattctg gcagaaaagt aaacagcact tcagcttttc tccaccatta aggtctaaat
      421 ggcctagaaa gtaaatcaat atctccagtc agccctctgg ctattgttta gccagtagat
      481 atggattttc tctagcttac tgcagtcctt tgggactaac ctgtaatcct cagagagtaa
      541 taataagttc attatttagt tcagctctct gttgtacatt taaatggacc acatccatca
      601 gcagcacttg ttaaaggaca atgacatccc attca
//
LOCUS       KCOD01001464             423 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 163527pyr ultra-conserved element
            locus uce-3181, sequence.
ACCESSION   KCOD01001464
VERSION     KCOD01001464.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 423)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 423)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..423
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="163527pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>423
                     /note="ultra-conserved element locus uce-3181"
BASE COUNT          135 a           72 c           84 g          132 t
ORIGIN      
        1 aactataaga agaatgtaat gaaagtggaa ttgcctagcc tatgtccctg cttgaaatgt
       61 ttttacaagg gcatccttgt taccagagta aaaaaaaatc gtaaatgtta actagaaatc
      121 actttccttc atcccacatc tttcccctca gtaaatgaag acaggatgaa cagctaaaat
      181 tactaattgg tttactgatc agttgtagtt tgttcgattg atttgcaatt aattctggtt
      241 tgtggtgcat agaagaggaa ggttggcgcc aacctttgag gcagctgata ctcaatatcc
      301 tccaagagag ctgtgggtca gaatatcaat aatctgtttt gaagcagctc ctgaatgtat
      361 tgagactgca tcttgtgcat tcataagagc tctagggaat aaaatctgca ttttattaat
      421 aaa
//
LOCUS       KCOD01001465             773 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 163638pyr ultra-conserved element
            locus uce-6553, sequence.
ACCESSION   KCOD01001465
VERSION     KCOD01001465.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 773)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 773)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..773
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="163638pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>773
                     /note="ultra-conserved element locus uce-6553"
BASE COUNT          223 a          149 c          156 g          245 t
ORIGIN      
        1 aattgtaaag ctcttgtaga aatccttgtg tttggtcctt aaatacattt cagtgagaaa
       61 ggcaagggct gtgagtgtca gcaagatatg ccttcagact gtttaggttt gattgcattg
      121 cattatagaa tgcttcatta ctggtttaac ctctcagagg ttttcagctg ctgttttatt
      181 tagctatacc gactacactg cctacagcaa ctccaggcaa tgattccccc agtggcatgc
      241 atgagctgcc ctgctctact gcaaaaatac attatggctg aatttgccct cggagtttgg
      301 aaagatctaa agtctttgga gactaaaaat gtggtttttt ctttgtttta gctggcagta
      361 tgagcctctg gcattttaaa gtgcaagtca ttagcgtcca caagggtgat gttaatatgt
      421 ctgtgtttca atctcaggac attttccagt cgcttctgcc acaacaatct ctgccatctc
      481 agtgcttttt aagccccttg tgaattcaag taagctttgc aatgccagta agaatcactg
      541 tagactttgg ctgaaaccag ttgctacctg atttattttt ttgcagtagt tggcttgaaa
      601 gtctttcaga gctgttatgt taatgtttag aaacattaaa cacaatcaaa agaaaagcta
      661 gaggaatttg gacatccaat tgaggtgcta ttagaataac aataataagt tgcacatatc
      721 ccagccacag tgataacaat ggcatccaga aataaagcca aactaaagga tca
//
LOCUS       KCOD01001466             746 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 163747pyr ultra-conserved element
            locus uce-4883, sequence.
ACCESSION   KCOD01001466
VERSION     KCOD01001466.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 746)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 746)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..746
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="163747pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>746
                     /note="ultra-conserved element locus uce-4883"
BASE COUNT          237 a          167 c          125 g          217 t
ORIGIN      
        1 tttatatttt aacatccaga ttttgaggtc cagttactag tgtttaccat agaaaactcg
       61 gtcaagctgg tgtttgacct ttgacaggaa gctgccctca ctccagctag tcccaacaaa
      121 ctaggcccaa gacaataagc tgctttatag ctattaggta ggccagtgtg tttctccagg
      181 aagacctcaa gctgaaaagc caacacactt gacaaccaca gccaaggtac caagggccca
      241 agcactagac attagaaaac aaatggaaaa gcacacatgg ctacatctgg aatcctaatg
      301 ggccaccaat ggttcccagc taaaggaaga attaccaatg ttattttatc atcccttgtg
      361 ctaacttagc tgtttatgta cagcaataaa tgatttttta aaaacatatt tgggtcatta
      421 tgtcatatac caccagcaag tacgattgtt ttattgtgct tggagtcaaa atactctgct
      481 atacccagat gtgagggaag ttcaaaacct ctagtccttc tgtattcatt cctgttggac
      541 aaatggatta agtttttaaa agggaaactg agaattttta tggcctgtac tcccatctca
      601 ctagtaaaat tctcactgat attttcctac agaagtttgc cttgccaatg ataacattaa
      661 atattacctt agtaagcaac ccaaaatttc aaccaacagg aaatgccaca cattttattg
      721 ccaaaacatc cccattctct tcttcc
//
LOCUS       KCOD01001467             506 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 163860pyr ultra-conserved element
            locus uce-7397, sequence.
ACCESSION   KCOD01001467
VERSION     KCOD01001467.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 506)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 506)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..506
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="163860pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>506
                     /note="ultra-conserved element locus uce-7397"
BASE COUNT          149 a          151 c           80 g          126 t
ORIGIN      
        1 aagaaatatg ctaccaaatg ccagaagaag gagcgagttt aagagccgtt gggcttaaca
       61 gtggtttgtg ctgatcacac tcgaatcttt ctgcaaaggc gcacatgcaa aaataacaac
      121 cactaagtaa ccacttcaca tctgccatta acattattaa acttcttaca agccgtatct
      181 accccacctt ccccactaca cacaaacata cacacacccc cgagctctgc aacacagcaa
      241 ctgggagcca agacggctct cctctcctca ctgcagcaac cacattcatt cctgttaagg
      301 ggttaacgat tcatttccac tacttctctc gagaaaacct acaatgaaaa cattggctca
      361 cgaaagcgtt ctcactgcca gaatgccaca gcgcgagtga aaagtccgtt ttgttttcat
      421 tacatctctg ggatttccgg cttaactcct gagcttagac accaaatccc tagatacccc
      481 acccacccag tttttcttct cctttt
//
LOCUS       KCOD01001468             688 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 163970pyr ultra-conserved element
            locus uce-4304, sequence.
ACCESSION   KCOD01001468
VERSION     KCOD01001468.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 688)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="163970pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>688
                     /note="ultra-conserved element locus uce-4304"
BASE COUNT          201 a          129 c          145 g          213 t
ORIGIN      
        1 gctgtaaatt ggatataagc acttgccaaa tgcgagggga gtggtttcca ctttggtctt
       61 tgtgtttatt gtttctgcac tggcaacaga attgaattca tagcagcagc aaaacaaaga
      121 cagctctgag ttatactgta attcactgct ggagatttat gaatattatt ttcctgtaaa
      181 acccagcacg ctttactact tgtaacctgt aagtggcata aaactgtgta cctagcagga
      241 tttcctattg cagtgagtgc caaacaccag tgaaagagct gcactacatg cacatgtggt
      301 tatggactat gaataaattg tgcctttatg tttaacttgt ctaatcagct caccatatca
      361 aaacttaata agtagctgct tctcatttaa aggtctagta aaactacaat tactatggct
      421 gtaagatgcc ttgtttcgaa aagagcatta aatagtttta tagatatggt tagaagctct
      481 tgtgtagttg tttttatgaa agtgaatgag ttcattaata atgggagtca gagacagaaa
      541 tacaggttgg gagttggtga agtatcctgc ctttgcatcc cttcctcaca ggtaagtcac
      601 ttctgccagg catggctccc caataacaca tccagaggtg attctttgta agccaccctt
      661 cctctaaggg gtagcactaa agggcctg
//
LOCUS       KCOD01001469             707 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 164073pyr ultra-conserved element
            locus uce-172, sequence.
ACCESSION   KCOD01001469
VERSION     KCOD01001469.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 707)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 707)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="164073pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>707
                     /note="ultra-conserved element locus uce-172"
BASE COUNT          169 a          155 c          140 g          243 t
ORIGIN      
        1 tagacctact ggttcctgct tttttctttt tttttttttt aatatgttac gtttgtaact
       61 tctgactgtc tgtgttgagc caatcttacc aactatcaat tgtttcctgt ttctctactt
      121 ctttacaaaa aactcttaat gggaaccctg gcactgtctg tcttctctgt tctgcagaaa
      181 tgttgaagga gttgaaccag caacgcagag cgaaagagtt tacagacctg aaaattattg
      241 ttgaaggcaa agagtttgaa gtccaccaaa atgttctagc ttcctgcagc ttgtatttca
      301 aggacctgat taaaaggttt gccttccttc cagctgtgat ctgctctgtt cttttgtagg
      361 gcgcatttgt gtcgcttttt tttcctcccc tctcttgcag gtttatgaag attgaatctc
      421 ctgtcacaga gccagtagcc attctttcca cctcctctga atgtatttcc aaactgagac
      481 tcagatccat ttgttacaca tctgactcgt acagtgtaat tatttctgat gagtagaggc
      541 tggttttggc cgaagaaagt gttccaccaa tctaagattt tgctaatggt gattcagtcc
      601 acaactgctg ctgtcgatgt ttgcaaggga ctctgtcaca cacaacaaaa gtctgtgctt
      661 caggctgcaa aaagccatca gcgttcaggt gaacggtgct gagacat
//
LOCUS       KCOD01001470             498 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 164177pyr ultra-conserved element
            locus uce-4079, sequence.
ACCESSION   KCOD01001470
VERSION     KCOD01001470.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 498)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 498)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..498
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="164177pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>498
                     /note="ultra-conserved element locus uce-4079"
BASE COUNT          168 a           99 c           87 g          144 t
ORIGIN      
        1 cagaactgaa agttatttta cactcgtttc tagagcagtt tggtacagta cacaaaacta
       61 cttaaatatt gcttttggag ccgacaaact tcatgttact tcactatgca atatactgaa
      121 gcctagtaat tattaggaca tgtggtagcc gtttatcacg actaacacca caaaatccac
      181 tctatgatca agataaaata gggcaaatgg tacaattaga ggcacattct ttggtgcaca
      241 acaatagaag gctcgtgaca tggaaagatt aagaaaagac tcaaacatct ttaaaactac
      301 tcattaccac cagttaaaac gtgcatgtct gacctttatg gtaatcagta atactccatt
      361 tgcacactac agaactaaat aagctttatt ttagatgcac agagttcttt gtgctggcct
      421 gcagttaact tagctgatct cggagctgac gcttgcagtg aatcaatggc cataatgata
      481 ggccatcata tttatcaa
//
LOCUS       KCOD01001471             421 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 164277pyr ultra-conserved element
            locus uce-2162, sequence.
ACCESSION   KCOD01001471
VERSION     KCOD01001471.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 421)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 421)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..421
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="164277pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>421
                     /note="ultra-conserved element locus uce-2162"
BASE COUNT          113 a           80 c          107 g          121 t
ORIGIN      
        1 agacgctaag atgaaaacaa aatagtttac atatggggtt tggatggaaa ctagggctgg
       61 gttttaagtc aaaactcacc atctcaaaac cacttctttt catccgcctg caggacttga
      121 ggtaagtacg tatgcgtttt ctggcacgct cttgatactc agggaattgt cgcctgcatg
      181 agtcaatgat agcctggatc ttttctttgg gctgcttaga gattgggacc attcggtcca
      241 agttttcatc tacaaacagc ctgacaaaca tctgttggca agagggagac agaggagatg
      301 ggtttggagg gcagctctct tctcttccta gcttcctggc ttgtttactg ataggaagac
      361 atttgtaacg ggaagccaga aatattaagc aaacagttct ttaaagggtt atatggggtg
      421 g
//
LOCUS       KCOD01001472             566 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 164384pyr ultra-conserved element
            locus uce-5871, sequence.
ACCESSION   KCOD01001472
VERSION     KCOD01001472.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 566)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 566)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..566
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="164384pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>566
                     /note="ultra-conserved element locus uce-5871"
BASE COUNT          163 a           86 c          116 g          201 t
ORIGIN      
        1 aaggcacacc tggggaggaa acagcaactg gaggttgtca caactgtacc tcccttcagc
       61 tttacacatg attgttgcag cttcaagatt ccatgttaca cctttaattg tgggcattta
      121 gcagactgcc tcttattatt aagatactgc tgaattttat tgtcaatgtg gccacaggac
      181 aaggctaata attaccagca ccagaagcag cttgtggttt tatattacat tgaggtaaat
      241 tacactggaa ttagagtgga ttacttttat caaatgggga ataagctgtt aattaactcc
      301 ctgctgtagc aatctttttc tgagcttgca actgttatta gctctagatt aaactgttga
      361 attaatttcc cacttactta ctatttcaag agtttttaat ttacctggca gcagttttaa
      421 tgggaaattg tattagtgag cataaattgt ttttgggaag ggtaaacagt ttgtgataat
      481 gtttattaag tcgttttgtt tgagcaaaaa tataattgca gttttaatta gtgcatggtt
      541 gttggagtat taggtttgag attaca
//
LOCUS       KCOD01001473             680 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 164496pyr ultra-conserved element
            locus uce-1917, sequence.
ACCESSION   KCOD01001473
VERSION     KCOD01001473.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 680)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 680)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..680
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="164496pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>680
                     /note="ultra-conserved element locus uce-1917"
BASE COUNT          203 a          128 c          150 g          199 t
ORIGIN      
        1 cacacatctt taggatctag ttttcaaact ttcagcagca tttctataaa tatattttgg
       61 ctgtttttta aagtgggctc tttggatcca atttcctgac gttccctggt tgacaggtag
      121 aaaaccttca gattttaata acaatgaaaa agtgcacaag cttcgtggtc aagacaggac
      181 agtgggtaca aaatagttat cttaaggcaa aatttactgt cagggaaaat ggaacattcc
      241 ttctgaactc acgaactggt agtgcatgtg caggttggtt gtagatggtt gctacaataa
      301 ggcttctttc atacaggtgt gtttatgccc caggcttgct ggccacagtc cattccattt
      361 acagaagctg aattaaacaa taactaccgc attgcaaaaa gaagaaggaa aaaaaaggtg
      421 aaaggagatg cctgagagct ttgttagggc caagaaaaac cctgttgcag ttgtcagagc
      481 ttgttgatgt tgcagagaat ggcacttttt ttttctgctg gattttgtgg ttctgcctta
      541 ggaaagaaag taaaatagaa cggaagaaca aagtcctact ctataaatca gcagctgctc
      601 cttgccagat caaagttttg ctcctggact acttgtccac tttaggtgct tgacagacag
      661 ctaacagctg gcctgctaca
//
LOCUS       KCOD01001474             389 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 164606pyr ultra-conserved element
            locus uce-7541, sequence.
ACCESSION   KCOD01001474
VERSION     KCOD01001474.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 389)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 389)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..389
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="164606pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>389
                     /note="ultra-conserved element locus uce-7541"
BASE COUNT          145 a           77 c           63 g          104 t
ORIGIN      
        1 accatctgtt aatcttagtt gtgattaaag aggtaatcct aatgcccatt attcctaatg
       61 acaagaccaa gcaggcttaa agcattagcc gtcggaggcc aaagagaaga agcaatgaag
      121 gatatcagca atcttaccca caattgagga attggcccgt cctctacaca acaaaagtga
      181 tacaaaagaa ttacaccctc actaaagtct atttcctcgt ataatcacac aaaatgattt
      241 ttcttaaata tgataataaa tcacagctaa aaatcaatgt ggcagggccc aactgctatg
      301 gcctgataac gcatcaatca atatttagta tttagatttt aattaataca tagcaaagca
      361 gaggcctttt aagagagaaa tattatctc
//
LOCUS       KCOD01001475             697 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 164714pyr ultra-conserved element
            locus uce-6054, sequence.
ACCESSION   KCOD01001475
VERSION     KCOD01001475.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 697)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 697)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..697
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="164714pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>697
                     /note="ultra-conserved element locus uce-6054"
BASE COUNT          225 a          123 c          126 g          223 t
ORIGIN      
        1 aaccatgtct catgagattg cagtgtacat ccagcccaca gtaataatga ttactataca
       61 tatatgtgta tatgctttat tgctaccttt agctggatta aaagcaatat atcaaatttt
      121 atatttctgc ttcttttatt agctttctag cacttgatca gctgatagag gcaataatga
      181 aatgtttttt tataaactgg agtttgtaag tcctgtcctg agaatgtaat atttcaaaaa
      241 atagcctaag ctttaaaaaa ccaattacag aaacagcatt aaaaatgcca agcactgggc
      301 agaagcaatt ctggatcagt ttaaaaaagt gattgatgaa actctaatct gagctgaagg
      361 aacagtttca cgacaagctg tgaccattcc acacacttca ttagctgcca taattagcct
      421 ggtgtttcaa tttgttagaa ctggtgggga caattttact cagaatgcaa acatcaaaaa
      481 acagggtgcc tcagacttca gaagaggctg atgagaagca ttcctagtct ctgttaacta
      541 aaagattaat tacagctgat gggaggctgt actctgattg tcactctgtc tatgtgcatt
      601 acttttagca ttagaagaaa gacatggttg acactacact gctcaatcaa gcagctttgc
      661 attagtgtaa tatgcgaagt tttatttctt tttcctt
//
LOCUS       KCOD01001476             475 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 164822pyr ultra-conserved element
            locus uce-1706, sequence.
ACCESSION   KCOD01001476
VERSION     KCOD01001476.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 475)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 475)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..475
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="164822pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>475
                     /note="ultra-conserved element locus uce-1706"
BASE COUNT          129 a           82 c          118 g          146 t
ORIGIN      
        1 gtagtcattg ctgggaacca cagcaaatag cttttgtgtt ccagtgtaag tactgaaggg
       61 cagttgtctg tgttttgcta tcttatgtca acagggaaaa ccatgaatcg gagaagccag
      121 cactgaacaa tatagcggac aatacagtag caatggaggt gacgtagttt ccgtaggagt
      181 gggactgcag ccttgggaac ttgtttaggt gctatgcatc agtagcattt tgaatgcaag
      241 ggatgatgga atgccgcaca ttgcgtttcc atggcagctg tggggacttg acagcaatgc
      301 acatctctca tgctttggtt tttcttttct tactgttaat aggaaagaat caacatctgt
      361 aaattaacaa tacagcaatt atctgtacag tactgcatat ttgtaatacc cttgtatata
      421 tgttacttga atacaaaact gttcatttgt gatgctttgc acttggggtg ggggg
//
LOCUS       KCOD01001477             442 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 164933pyr ultra-conserved element
            locus uce-2671, sequence.
ACCESSION   KCOD01001477
VERSION     KCOD01001477.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 442)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 442)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..442
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="164933pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>442
                     /note="ultra-conserved element locus uce-2671"
BASE COUNT           88 a          120 c          125 g          109 t
ORIGIN      
        1 ccaggatgaa cagcaggtgg cgtctcccac ggacacaagc aactttgaca gcttcccaga
       61 ggacagtgac gagccacccc ctgacgacaa ctcaggatgg gacatagatt tttttctctt
      121 acctgcttct gccttgccga ggacagcttt tcctgggacg tggctgccag cggaacggga
      181 agaccggaat tggggaggat tcgtgctcgg ggtcaccatg atgccttgat tgatgctgct
      241 cctccagtgg cattaggact tctgacaata gtgctctcca tgttttctgt tggaacgtga
      301 cctggggtgg tcctggcacc tgtcgcctcg gttagcagat aagaggcact taattccagc
      361 tgctccgtag gatcagtagt aatttatgaa gtgctgcacg cctcctgttt gggctgttcc
      421 caccctccga gctcggcagg gc
//
LOCUS       KCOD01001478             450 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 165041pyr ultra-conserved element
            locus uce-7971, sequence.
ACCESSION   KCOD01001478
VERSION     KCOD01001478.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 450)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 450)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..450
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="165041pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>450
                     /note="ultra-conserved element locus uce-7971"
BASE COUNT          167 a           67 c           79 g          137 t
ORIGIN      
        1 gtaactgtct tttcattaac cacatttagg aaaaacaact ttaaacatcc cgtataagtg
       61 tcagtggagg cactttacaa atgtgagtct tcacagcaga aagcatagca gagaactata
      121 agaagtgaca gtaagtgaat tttattttaa aaatggacca gtaggacaat gctaatgagt
      181 agatttgcca gtaaaagcaa ctagactctt caataaaact aatcaaatta atctgtcatc
      241 cccagggaac ttaaaagggc atgaaatagg caaacagctt cagagctttt tattgatgtg
      301 ctgtggtgga tcatttgata gaattgcaaa atttgcaatt ttctattgat cataaattca
      361 gtagctatct ctatgtagcc tttatttgat atagaataaa atcaaatatc atagagatgc
      421 gaacttaagg attattcttg aaataataat
//
LOCUS       KCOD01001479             441 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 165149pyr ultra-conserved element
            locus uce-2840, sequence.
ACCESSION   KCOD01001479
VERSION     KCOD01001479.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 441)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 441)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..441
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="165149pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>441
                     /note="ultra-conserved element locus uce-2840"
BASE COUNT          113 a          108 c          104 g          116 t
ORIGIN      
        1 gtgtgtagga gaacaggtca gagctgaggc cttgaaagag gattacagat gcctcatgga
       61 tgtccctctg aaataagtag gtggctctcc agatgcttgt taataactca ataacccata
      121 tcttccagat aatcgttatg taccttcagg tattagaatg tgaacgtaac caacacctgg
      181 tccagacctc atggtaagtt gagagagacc agaaggggca gtagcagaaa tatgtcactg
      241 ggcagcattg cccagcagtg cttggggcca caccagacag ctgcactgtc cttggtgtgc
      301 cccaaactac ttcccaaatg ttgatcggcc tcttgaggca ctgttttaat ggtaaggtag
      361 ctttccaccc tgacttctca cttccctcct ctctgtttcc agctgaaaaa tggcttttcc
      421 cagggcctga gcttgattac a
//
LOCUS       KCOD01001480             641 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 165257pyr ultra-conserved element
            locus uce-6890, sequence.
ACCESSION   KCOD01001480
VERSION     KCOD01001480.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 641)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 641)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..641
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="165257pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>641
                     /note="ultra-conserved element locus uce-6890"
BASE COUNT          173 a          120 c          136 g          212 t
ORIGIN      
        1 gtaccaaatg tcagataatg agatgaaaac attatattga actttctctg ctcattttca
       61 aatttgccaa acatacttgt gtccttgggt aagtggtgct ttggagggtg ccacagatgc
      121 caaaccctga taaaatctac cttatcttgt taatgaacac agttgttccc catctgctgc
      181 ctctgtctga aaggttagtt ccttttgatc acaaaggaca taattattgt ctgtagagga
      241 gtcaagtaca aagacagtcc atccagtctg accactacta cactgcaggc caccagagat
      301 taacagctgc ttctcctttg attaggttag gtagtaacag ttactttagt taataattgg
      361 atggattccc aggccatgta attcaggttt aggctgtcat tttttgctgg catgtagctg
      421 agctgtatta ttggaacaga gcctgtaatc ctattagtca gttgtcactc gagccatagg
      481 agagaaggga aattcagatc cattaaggtg ttgtaacagg tattagccat ggttgcccac
      541 cgtgcaggga gctgtcttat tggggtttca ggattgattt ttttaattca ttattaagcc
      601 ataaaatggt tacatggttt gtctaattta tcactgtttc t
//
LOCUS       KCOD01001481             465 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 165368pyr ultra-conserved element
            locus uce-6608, sequence.
ACCESSION   KCOD01001481
VERSION     KCOD01001481.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 465)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 465)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..465
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="165368pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>465
                     /note="ultra-conserved element locus uce-6608"
BASE COUNT          141 a           98 c          101 g          125 t
ORIGIN      
        1 tacaaagact caggaaggta tgagaaggca gtcacacttc agaaaaagac aagctgctgt
       61 ggaagacctt tcctttctag tttggggaaa agagaaactt ctgatgcgct cactggaaaa
      121 cagactgcat aatggagcaa gtcatgtgga ttgcccagag cctccggaga aataagggag
      181 caatttctat tccgtagttg atggctgtct gaaattctat tcacaaatcc aaacagaaac
      241 aaagcctcag gaggtcacaa ctgcttcctc gacgtttgca taatgggcag cttgaagaca
      301 acgtctagga tacctgctga tcaatttaac tacttcaaca tgttttgttt gtattctgtt
      361 tatatttgat gcagtttgct gacaagtgca agccaggcct gagaaaccca cttgtcaggt
      421 tgatttatga gcacatcaaa ctgtaacttt ctactcgcca cttca
//
LOCUS       KCOD01001482             542 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 165477pyr ultra-conserved element
            locus uce-7234, sequence.
ACCESSION   KCOD01001482
VERSION     KCOD01001482.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 542)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 542)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..542
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="165477pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>542
                     /note="ultra-conserved element locus uce-7234"
BASE COUNT          200 a           96 c           81 g          165 t
ORIGIN      
        1 tactttagac agtaaaaagg cattactttg ttacatcata taaacatgta gatttgattc
       61 tctctttact catgctgtaa aaagaaagtt ttaaagtgtt tagccatacc tgaaaatgta
      121 aatgcccgag cctaatgtaa tgctgaagaa aaattaagac aaatgatact gcatccttgc
      181 cacaaactgc agcttgtaca aaattcactt tagttattat actgtgaata cgtgtgctaa
      241 acctcctctg tgtatgcaca atttatgttg aatgcaacat gaatcatttt aatagaccaa
      301 gcaaaaagtc cccaaagtca attttcaaat tatgaacctt ggaacagaat atagcaacaa
      361 tgaacaacaa atagttcaga ttttacgctg aactacaaat gaaccattaa aggtacagta
      421 tactcattca gtttctcctt atcatcacag tggctaaaaa gcagaacaag agtatttctt
      481 aaaggtcagt tctaaatttt accttattaa gaggcacatt catgagagca catgaagatt
      541 tt
//
LOCUS       KCOD01001483             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 165584pyr ultra-conserved element
            locus uce-2801, sequence.
ACCESSION   KCOD01001483
VERSION     KCOD01001483.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="165584pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-2801"
BASE COUNT          189 a          111 c          110 g          192 t
ORIGIN      
        1 ttgagataca ccatggctca tcttttgtga agtgacttaa ctgtctaaca taaagggcat
       61 tagatgtctt tctaattggt ttaatcttaa ttgggttgac ttaattgcag aaatctctct
      121 gaggagatga ctgtctctgc ctttcatctt ctccccctgt ataaacagga gattaaaccc
      181 ccactcattt tctgcagaaa aacgccccta cacctgcgag gtttgcaata agtccttcaa
      241 acgacttgat caagtgactg cacacaaaat aatacacagt gaagataaac cttataaatg
      301 caagctttgt ggaaagggat ttgcccacag aaatgtttac aagaatcaca agaaggtaaa
      361 gcactctgct gttgttgttt acaggtctgc cagcctcaga tttgcagatt tttttttctt
      421 ttaagtggtt cattgttaag ctctgccatg cttataaaca tgggattaaa gtattggaga
      481 atgtagtttt agtgtttgtt atatccaaaa tctcgaaagg ctgaatcaat tctagtaaaa
      541 aagttaaata agagtaaatc acagttgctt ggttaaaagc atcaaataaa tcccattttg
      601 ac
//
LOCUS       KCOD01001484             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 165690pyr ultra-conserved element
            locus uce-519, sequence.
ACCESSION   KCOD01001484
VERSION     KCOD01001484.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="165690pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-519"
BASE COUNT          186 a          115 c          102 g          199 t
ORIGIN      
        1 ttatgcctgc aatattttag atccgtttgt ttgaaaaatc tgtcttctgt tttgttttca
       61 taaagaatga aaaccctaat ggagtccaga aatctgttaa tggtactaaa attataacag
      121 tatagcaaaa gaaaaaaccc cacacagtaa agtctatatt atatattttt tatgtcttta
      181 aatggaattt acagttctcc ctggcaatgt gaatgaacat cctataattt agtcaattta
      241 cagattacag gttcaaattg accttgtagc ccataaaatt gctcatcttc agtgcaggat
      301 tagaagtggg aaaagaatgt cataactgta tttaaggaat ttaccataac aatggaaagg
      361 aggatatgca tgcataattt tagccactct tgctcacatc acagttttca attctgaaac
      421 aatgcatatt ctgcgctctt ctcctggtta accatggtgg agactgtttc aatttactca
      481 cccacagaca tgacacttgt attccctcat cccaaggtgc ctcttgacat ggtttctggc
      541 atctccaagc tgagctgttg caaagtggca tatcttgcac ttgaatggct ttgatcctaa
      601 gt
//
LOCUS       KCOD01001485             411 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 165796pyr ultra-conserved element
            locus uce-7244, sequence.
ACCESSION   KCOD01001485
VERSION     KCOD01001485.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 411)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 411)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..411
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="165796pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>411
                     /note="ultra-conserved element locus uce-7244"
BASE COUNT          133 a           48 c           79 g          151 t
ORIGIN      
        1 agagtatttc actgattttc ttaaacttaa gtgggttttc agttaatttt aaagtaaaat
       61 ctgaaatatg ggattgagtt ttgagtatcc atgtttacac tttgttctca ttaggtacaa
      121 tgaagcaaat cttccatata attgcattag tgatacgtga cattaaagct taattggctt
      181 attttaaata tcttacacat caatttcctt cagattgtga aaattgaaaa ggtcatgagt
      241 gcagtttttc cagggtgaga gatttcaatt ttagtacaat ttgtagagat ttaattagga
      301 aacatgactg gatgttgaat gcaaattagg ctgttcatta gagtatagaa gctgaaacat
      361 cttgaagtat tgtggaaatt tgattgcaga ttcagtaagc accttgattg a
//
LOCUS       KCOD01001486             678 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 165905pyr ultra-conserved element
            locus uce-7726, sequence.
ACCESSION   KCOD01001486
VERSION     KCOD01001486.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 678)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 678)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..678
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="165905pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>678
                     /note="ultra-conserved element locus uce-7726"
BASE COUNT          205 a          157 c          149 g          167 t
ORIGIN      
        1 aaaattgctc ctgtccaata acatgctcaa agtactcctt tgccagaggc attcactcat
       61 tatataaatc aaacaagcat acaaaaacag acaaaaagtg actggtaatg cccagtgaat
      121 ttctgtgctc aactaagatg atttggtgca ttgcatgcag atgtcaggta tttttataaa
      181 gagctccatt gtgcagggcc ccagtactcc tccattgctc ccagcactcc cttaaaaggg
      241 gggcggtggg cagacaacca ttccagctgg gcttggaacc tcgtctgagt caggaaaacc
      301 acagctcata agcaaagagg aagcataatg ttctacaagg acaaaacatt agcaaaaatg
      361 tcactcagcc ccagttccac atgttggctg ccacggcctc ttcctcctag catgcccgat
      421 tgatataaat tccatctgct cagcagccaa gtgacagaga agaaataccg gcatctggtc
      481 tctattgctg tcgggttttt gttcatgtta gaccttagct agaaacatat gaagaaatga
      541 aggtgctggc aagcgactaa aaggctgcac tggcacaaat gagactttct gatgcttttc
      601 acacttcact ctggattttt acaggcaaaa agatggagga gacttgataa actgagtctg
      661 gagagccaat gggcctgg
//
LOCUS       KCOD01001487             538 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 166013pyr ultra-conserved element
            locus uce-6546, sequence.
ACCESSION   KCOD01001487
VERSION     KCOD01001487.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 538)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 538)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..538
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="166013pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>538
                     /note="ultra-conserved element locus uce-6546"
BASE COUNT          143 a          115 c          130 g          150 t
ORIGIN      
        1 ttttagcatg ttattttccc tttgtctctg accagccctg tgctccttgt tttcctggct
       61 caggagactt acacagaaca gtgcattgta tcacagaagt gtctagggga aacagctgct
      121 ctcttctgat ttgtatcccg aactgcccaa cagataacta attgcagctc agttgcttct
      181 attagctatt tacctaaaat tgagctggct aatgaaaatg tttctaatta atacgaggca
      241 gattaaaact cattacagca aggtcgtcag taatgagaga taatcagagc acaaatgacc
      301 gagcttggag aaaaatgaag atggcaggtg atcagtgctg gttgtgcatg cgccggccag
      361 caagggcagg gttcagcaag gtgactgctg gtgctctgcc ctgcagttga gaaacactgt
      421 atcctcctct ccagagcggg gagtgactgg ccagcctagt gtaaaaatgt ttaagtggca
      481 tctcacagca gtttgttgct aggccagcct ttagtcacct ataaagtttt gaataggg
//
LOCUS       KCOD01001488             696 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 166125pyr ultra-conserved element
            locus uce-3759, sequence.
ACCESSION   KCOD01001488
VERSION     KCOD01001488.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 696)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 696)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..696
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="166125pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>696
                     /note="ultra-conserved element locus uce-3759"
BASE COUNT          253 a          122 c          117 g          204 t
ORIGIN      
        1 tttccagtta cacaccagaa ataatattat tttcacaaca taaaactcta aagtgcgcta
       61 tttttaaata acaagtgaca cttatttaca gaaacatggg atcaatagga ctacataata
      121 ttgaaaaagc cttcagaagt aaaaataaat aactcggaag tcacattcct caaattccct
      181 tttaattcca aagtacaaca gaaaggcatt atgaaaaaaa cagtatttcc cttctttcat
      241 taactcatct gtaactgcac tgaattcaat aacattcctc tgctattcta agcttgaaag
      301 gcatgctcgg ggtaaagtgt tatgttggta taaagcacaa tgccagactg atgtgctgga
      361 caaaagtgat caaagttgaa gtaattttag ccaacgcaca agtattctgc tgcattattc
      421 taccagaatg acatctgttg agcaactcgt cgcagaataa atcagttgtt ataggcaggc
      481 ctggctgggt aggggaccat gtaagactga ttagagtaat gtttgattaa acaaactgct
      541 cgagttaaga tcataactgg atttggaatt catgccaaag tagtcctctt ccaaacaaca
      601 agccacaatc aattatttaa gataaaataa gcttgctttt aaataatgat ttgatttctt
      661 tgataattag agcaattacg aaagcagagt gtaaaa
//
LOCUS       KCOD01001489             447 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 166225pyr ultra-conserved element
            locus uce-6411, sequence.
ACCESSION   KCOD01001489
VERSION     KCOD01001489.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 447)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 447)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..447
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="166225pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>447
                     /note="ultra-conserved element locus uce-6411"
BASE COUNT          130 a           90 c           97 g          130 t
ORIGIN      
        1 aaaacagagc tcagaaattc ccagcatgtg gcccattttc tgagcggatg aaactggact
       61 ttccagttct tgcaactgca ttaagtcctg taccatcatt ttcaagtaat ttaatcacga
      121 aaaatttgga agcaaacaga tattttactt aatagaaacc atctgcactg tacagtaggc
      181 aaattgtata aaaatgaata aaactgtctc tggaggaaaa tgactcaggc accagcttat
      241 ataatgaaga tgtatatgtg ccttttagca tttgcattgt ctattagggt aggtaaatcg
      301 cagtgctggt gtaaggaaac agctccaggt tttattgcca tcctgtgact gatggcaaag
      361 gcagcagggg aatcctttac agggggttgc tccacacccc caatgcttta ctggttttcc
      421 ctccgttggg tgcttgattc aggcctg
//
LOCUS       KCOD01001490             283 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 166334pyr ultra-conserved element
            locus uce-7960, sequence.
ACCESSION   KCOD01001490
VERSION     KCOD01001490.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 283)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 283)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..283
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="166334pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>283
                     /note="ultra-conserved element locus uce-7960"
BASE COUNT          106 a           38 c           73 g           66 t
ORIGIN      
        1 gagtgaaggt tgcttaaaag agagaggaac tcaatcaaga ggtggtgatg caagtcctca
       61 gctgctggca gagacacagt taacattgta aacggttgaa cttcagcatg gcacttctcc
      121 aaatgagttg actgttgaaa ataaaatgtt ccagaagaac tgggagaaca ggaaagaagt
      181 taaaatagca tggtttgtat gccagtgctg aaagaagaaa aaggaaggga gatagatcaa
      241 cttatgataa ttatcttaaa gggcattagt agaagtttcc aaa
//
LOCUS       KCOD01001491             732 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 166438pyr ultra-conserved element
            locus uce-3528, sequence.
ACCESSION   KCOD01001491
VERSION     KCOD01001491.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 732)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 732)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..732
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="166438pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>732
                     /note="ultra-conserved element locus uce-3528"
BASE COUNT          237 a          152 c          137 g          206 t
ORIGIN      
        1 ggtatacagg ttaattaatc ctacaattaa tactgcaaaa tgtttggatt taacttgtgt
       61 gtctgggaac atgtaccagg gctttaaagt ttgatttgta gcatcagtct cgaattttac
      121 aacctggcat aattaattca atcccctgca ctttgaaatc tccacaataa taagaacttt
      181 atcaggctcc tgtcggtatg aagtagcaca gcaaaccgaa atcccaccgg gagcagtcta
      241 gagccctctc ttctaagcag caaaatgctg ttatcatttt ctgaattaca ggaactataa
      301 aaggacactc tactcaagct gccgctgaat gtcacctgaa aagcaatcac aaaagggctc
      361 tgtcttggct tatctctgag ctctgtcact acggcaacca gcagggaata agtatctgtg
      421 ggtctatgaa tttaagaatc ccataaaagc cagggctaaa aaggcatgtg cagcctctca
      481 aagattgact gcattaatac attagcaaat actgtgaaac actggataaa tgtcagcaat
      541 tatggaaaaa gcatctaata acgatattcg ttgtctgtca aacccccgcg aggtttgata
      601 tgtaactgcc actcaaagct gtctgtaatt ttatctcaca tctgaatcca catcattcaa
      661 atttgtactt tgaaagtaat aaaagtgtaa aagcaggatg ttctgtgctg atggcaactg
      721 tcaacaaatg ca
//
LOCUS       KCOD01001492             414 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 166545pyr ultra-conserved element
            locus uce-7772, sequence.
ACCESSION   KCOD01001492
VERSION     KCOD01001492.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 414)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 414)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..414
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="166545pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>414
                     /note="ultra-conserved element locus uce-7772"
BASE COUNT          150 a           78 c           56 g          130 t
ORIGIN      
        1 aaaaaatctc tcctttaaag aatacataaa gctctcataa ctcttctatg atgtcagtgt
       61 ctctcacctg acaataccac tagtatgcat agtagaacat ctcatatttt atagtaccca
      121 ttttataaat aaattggcat tttccatccc gtttgtgttt atcatcagct tcacaaagaa
      181 accagtaaat aaaactgtca aggacagtca caacaaaatg atctcacatc aagatataaa
      241 acttgaagat actaaaagat gcttcttttt acataaaaag acagatttaa aaagtgcaag
      301 gcaagatttg cagggaaagg gaatatgtta tttttaggca catccacttc tttaaagcaa
      361 gcttcagaat gaaattccag ttcgttcttc atgataccgt tttaaagtct ttct
//
LOCUS       KCOD01001493             604 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 166651pyr ultra-conserved element
            locus uce-4345, sequence.
ACCESSION   KCOD01001493
VERSION     KCOD01001493.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 604)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 604)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..604
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="166651pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>604
                     /note="ultra-conserved element locus uce-4345"
BASE COUNT          198 a           94 c          123 g          189 t
ORIGIN      
        1 tctctgtttt cctagctgga aacaaatgag aaagttcagt gaagccatta aagagttaag
       61 attgcagatt aaaaatccta ttaaaaccct ctatccagtg ctgtgctcct tcattcctga
      121 cctgtaaggg ttaacaattg aggcctgtct atagctcatt tctatagtaa cagcaagact
      181 gagacttttt tatgggcacc taataattag aaagtgctag aaggtataac aatataatga
      241 atcaaaactg atagacttgt gggtttccat agaaacatgt ataattatga taatcggtcc
      301 ctggcgtacc ctcagaatcg tatacattca gttaaatgca ataaacatta ggcactattt
      361 agtgagctgt gatgcagatt aacagtgtga gatacaggga ggctatgaat aaaattgctg
      421 tacagtttat ctcaaactaa tttcccagat tgctttaata gatgtgctgt gtggatgtga
      481 agaattgaaa gtgtattttt gttagtggta aagctaacaa agataatatt tcataaaggc
      541 tgactgttaa ttttgatgca gctcaaaatg tactgtggca cgttgttgca tgggagatca
      601 ctaa
//
LOCUS       KCOD01001494             387 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 166758pyr ultra-conserved element
            locus uce-6707, sequence.
ACCESSION   KCOD01001494
VERSION     KCOD01001494.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 387)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 387)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..387
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="166758pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>387
                     /note="ultra-conserved element locus uce-6707"
BASE COUNT          131 a           72 c           90 g           94 t
ORIGIN      
        1 tgtgagccac taaaaggtag aaaatagcca gagagaatta tgaccaaatg ccagatatta
       61 aaaagctctc cacatgtggc acagaaagaa acagccaatt cactccaatt gtctgcttaa
      121 caggttgagc ctctctccaa ctggtagcaa tcaggcagga cactagagcg ggcaggaaat
      181 ctaaaattag gttttactac ctataatgga ggatttatgg gataatttaa ttggcagtct
      241 tgggactgaa acccatggtg ggggaacaaa aacatctttc tggatatact ccctgaaccc
      301 ttcctgtagt gggctgaaca ataaaagtac tggggaaata acctgagatg taatatcaaa
      361 gtaagtggtg catgacaatg tctgtgg
//
LOCUS       KCOD01001495             403 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 166862pyr ultra-conserved element
            locus uce-7128, sequence.
ACCESSION   KCOD01001495
VERSION     KCOD01001495.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 403)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 403)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..403
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="166862pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>403
                     /note="ultra-conserved element locus uce-7128"
BASE COUNT          119 a           62 c           59 g          163 t
ORIGIN      
        1 cactttattt tgtccatctt tccatggtct gtgttgtttt ttattgtcat tattcaaaac
       61 atgaatagaa gtgaatatcc tctaagttat gaatgtaatc aattttgagt ctttaattgt
      121 aatttttttt ccataaaatt cttttaattt agtctaatat aatggcacat caagcagtaa
      181 tgggtacatt aaattgaatc atgatgttca tatacacatt ttatgacaca atcaaatatc
      241 ccaatgcatt aattcatgtc aatcagttaa taaaatcaaa taggaaacat ttctctagtg
      301 ctgttaactg tgtttctccc atttggaggg tgacaagatg gcctctatat cttgcctagt
      361 tcatgttttc ttggctgtgt tggagtcgat atatttactt act
//
LOCUS       KCOD01001496             473 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 166970pyr ultra-conserved element
            locus uce-6164, sequence.
ACCESSION   KCOD01001496
VERSION     KCOD01001496.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 473)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 473)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..473
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="166970pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>473
                     /note="ultra-conserved element locus uce-6164"
BASE COUNT          155 a          101 c           84 g          133 t
ORIGIN      
        1 ctcacttcat cagttaaaat gcttagaaac attttcagtc atcctgccag gcgttatcag
       61 taaggctggt aggaaaaata ccaggacgtc tgttacaggc aaacatctga agcctccctt
      121 gtcctttccc aaagtgcaaa ctttgctgtc atctataaat caaagagttt atgaggctgc
      181 aatatttaca ctctaattaa aaaatcataa agccagaccc cttcagtttg tgaaaagaag
      241 aactcaggat ctgctattga aacatggtgt taatcagtaa ctcctaatga tctgctccac
      301 agccttagag gttacatgct tattcagcta cacatagcaa acaagataat gagggaaagt
      361 ggaagaagtg aagggaatat gttacagcaa acgtagggtt ttgctaccac caggacctat
      421 tcctaacccc tcatgtcaca gtttattttc tcattttctt cataaagtaa aac
//
LOCUS       KCOD01001497             538 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 167080pyr ultra-conserved element
            locus uce-4184, sequence.
ACCESSION   KCOD01001497
VERSION     KCOD01001497.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 538)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 538)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..538
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="167080pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>538
                     /note="ultra-conserved element locus uce-4184"
BASE COUNT          149 a          118 c           83 g          188 t
ORIGIN      
        1 ttttttagaa agaaccatct tcctaattta aatatttagt ctaatgtctt atcttctaaa
       61 ctactgatgg acaccatttg gtttttaccc acaacataaa acccagtacc ttaaattcca
      121 gttccattcc tgtgacattc tctcctgttt ctatctgtgt cagcttctgg atatatgcat
      181 acaggtttct ggctggcact tcggtatttc cacatgtcac tgcttccagc agtgcatcat
      241 ggataaagat gtattggtcc tcagtttgaa ccatgtaatt cctttgtgct ctcattagag
      301 ttacgtggcc ataaatatct acagtctttt catgctttat tctctctaac atggcatcta
      361 tcacaatgaa acagccagtc ctgccgactc cagcactaaa agaaatgaac acgggagaga
      421 aattcattca ctgtgcttac ttttatgtca ttcaagtttc aaagttttgt aatgctgatt
      481 taaatagcac atgtttctga atatgaacat ttggtgccct gaaacaagta aactcctt
//
LOCUS       KCOD01001498             645 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 167191pyr ultra-conserved element
            locus uce-1257, sequence.
ACCESSION   KCOD01001498
VERSION     KCOD01001498.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 645)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 645)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..645
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="167191pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>645
                     /note="ultra-conserved element locus uce-1257"
BASE COUNT          186 a          144 c          124 g          191 t
ORIGIN      
        1 tgtctctgca tttggcacct gttcccacag cccccaggca ctgtattccc taaccccccc
       61 gagccgtttg actgcggaga cgccggtgtt attgtcagat tcaagagtta aatattccag
      121 gaggaatttg ttcctgcacg gtgatacata atgcctgaaa accccctgca ccaatattgc
      181 tctcaaattg gcagcaagtg aacaagggac atgaaggatg cttcagcaca gtaacctatc
      241 cttccttctc tcctgggagc cacttggcca gctttcatcc tcataattat aataaatttg
      301 acatttcata gataatattg atttctgtat tttagcattt caccataggt gacagtctag
      361 cgtcaagaat gaaatttcta ttgatctcca gcgcattaat ctctcatgtg tatgtgatca
      421 tttttataag accttttact gcacataaat caatatttca tatttccagc tatgccagag
      481 gagatgtcat atttgtaaac tgtgagttga cacctgcaat tccttcctgt tcagcttcaa
      541 ctgttcagta acagtcgatt cagggttggg aaaggatcaa gctccagaaa caagcgagat
      601 gaaaaagagg gatgtagaat acagtaatta gcttaatgaa caaag
//
LOCUS       KCOD01001499             842 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 167303pyr ultra-conserved element
            locus uce-5293, sequence.
ACCESSION   KCOD01001499
VERSION     KCOD01001499.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 842)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 842)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..842
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="167303pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>842
                     /note="ultra-conserved element locus uce-5293"
BASE COUNT          251 a          173 c          128 g          290 t
ORIGIN      
        1 ttttgttgtt gatttctttc ctgtgggttt gtctcactga gtttcctagc cagatcaaaa
       61 cactggttcc ttaagcactc caaactgctg agacacacct cttcatcact ctcctccact
      121 attttttctg taagtccatt gttcacaggc ttccctagca ttacaaagtt catattccta
      181 ttgtcttgct gtgaagtatt gtctgcataa tttctgtcat taatattttc tgaaagcact
      241 acaccatgtc cttgtgctaa taatttaagg gagtccactg tttccctaac aacatcactg
      301 tctaaatcta aactcagctc acttttccga ccgatatttt catttttgtc actatcatct
      361 tccagactat tagatgtatt gctgttcatt tctgattctg tcctggctct gtatgctgca
      421 tcctctgcaa ttttgccaag atttaacaat gacttggcca ccagttcatc gtaattatca
      481 tactcatcat tattgttatc gtctttttct gtgtcttgca ttattcgagt attgtgacaa
      541 ttcatttgat ggtcttctgc ataaaaaaca gaaacaaaga aagaaacaaa gaaagaaaga
      601 aaaaggaaaa gaaaagaaaa aagtggctac aattggaact gttgttgcaa ttgcacggac
      661 agaaaacaaa ctgcatgtca aatattgtta atcatacagc aattctagaa cactatggct
      721 gacccatttg aactgaaaca gggctatttt tgtttatttg ctattcacat gaatttcttt
      781 cacagaactg ataagaaaaa ggcaatcaaa atctactgct aaatgttatg gcataaatac
      841 tt
//
LOCUS       KCOD01001500             344 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 167405pyr ultra-conserved element
            locus uce-6826, sequence.
ACCESSION   KCOD01001500
VERSION     KCOD01001500.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 344)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 344)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..344
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="167405pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>344
                     /note="ultra-conserved element locus uce-6826"
BASE COUNT           70 a           89 c           96 g           89 t
ORIGIN      
        1 gcacttacct aggattttgc tgatgttgga gttgtgcatg tcggggaagg cctggaggat
       61 tttccggcgc tcatccttgg cccagaccat gaaggcgttc atcggccgct tgatgtgggg
      121 ctcactgctg gcacggcccc gcgagtcccg gtagacccgg gcttcagcca ccgtggcccc
      181 tcctgttggc caacaataat actgctgtag tttagcggca gagccattca ctgctttact
      241 ccctgtaacg tcagggcagg aagaaacaag atggatgcaa agcaacgtga attaggaaag
      301 tgctttcagt gctgtgctta ttttagcctc ttttccagat ttac
//
LOCUS       KCOD01001501             586 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 167511pyr ultra-conserved element
            locus uce-3917, sequence.
ACCESSION   KCOD01001501
VERSION     KCOD01001501.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 586)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 586)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..586
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="167511pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>586
                     /note="ultra-conserved element locus uce-3917"
BASE COUNT          167 a          136 c          126 g          157 t
ORIGIN      
        1 tctgtaggcc cttcaaaaat tgcacacagc cgatttaatg caaaccagaa gtcgctgact
       61 tctggatgaa cattcggttt cattcccaca tggatattaa gacaaagcgg gggagggggc
      121 ttcctcctca tttatttaca gttaaagggt gggtcttgag caatgagcat gaggctagtg
      181 aagaatggat ttggtttatg ggaagacacc tcccagcctc ccattctgca gccagcctgg
      241 gttgtgtgta acctccccca tctcgcatct gccttgccca atcttgtctg ggcccgctcc
      301 aataacaaca tctgcttggc agcttttcaa acccatggat agttatctaa ctgaggcttt
      361 tgtgctgcac tgtttattct atgtgaagaa atgcctcctt agttgaaaga gtactttaga
      421 aaagctgtgc agctattagc aagtgaagca caaggctaat aacccccacc tgctcatcaa
      481 attaattatg acatctgagt cattataact cagaaagaac acataactgc agacttgtca
      541 cacgtagaaa taaaaacact ccgcattaga cgagggaaat attggg
//
LOCUS       KCOD01001502             528 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 167621pyr ultra-conserved element
            locus uce-1937, sequence.
ACCESSION   KCOD01001502
VERSION     KCOD01001502.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 528)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 528)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..528
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="167621pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>528
                     /note="ultra-conserved element locus uce-1937"
BASE COUNT          154 a          100 c          104 g          170 t
ORIGIN      
        1 gagcactgga ttaggaacaa tattcaacaa aatgctgcct gcattctctt atggctttca
       61 ttaccaaatt gaaaatctgt gtagatttct gaaaattact tttaaatgta gccaatctcc
      121 tcgactgcaa ggcttgattt gctggtgagg gagtcctgct gtgagatttt aatgaaagat
      181 catagtgccc ctccaagacc gtcaaagagc tatgggccct aaaagacctg aaataatctg
      241 ttttactttt aatggcagcc attttatatt cattaagatc aaaatgcagt tttgcaggca
      301 aattgcaaag ctgttccact cacagcttga gaacctggag gccctacagc tttttatctt
      361 gttcataagc aaatatgcag ttaatatctt ttaatatgct ttgatgcttg gtaccttatg
      421 ggtacattgt actggaggtt agagaactgc atgtttcttt ggcagtgcta gcaacgaact
      481 aaagcaccag tccttttatt tccataatgg cagaagaaat gagtcttt
//
LOCUS       KCOD01001503             555 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 167723pyr ultra-conserved element
            locus uce-7084, sequence.
ACCESSION   KCOD01001503
VERSION     KCOD01001503.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 555)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 555)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..555
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="167723pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>555
                     /note="ultra-conserved element locus uce-7084"
BASE COUNT          177 a          104 c          109 g          165 t
ORIGIN      
        1 aaggagaaac ctttcatacc acagagttac cttgcccctg gatttgtttg cagtgctttg
       61 cttaaggttt aattctattg attacacatt ccattttcca aagtgccatt tgcctgaagg
      121 agcaggtggt gtttgctgtt tccatttaac tgatatatta gccatgtggt gcactgcatc
      181 agtgggcagt attaatcaat ttacggcaag atgacagaga gaatcactca cagcaaaatt
      241 gcaaaaaaaa ggacaaaagc aggaaaataa tgaccattaa tggggaactt gaaaacagaa
      301 tctgggcttt taatacttct ctttcataac aaatggaatt ggaagaattt aggagcagcc
      361 agtgtttgaa aggagacaaa tatcactatg ttcagtgcag tttttgtaag cactttgctg
      421 tttggcattg tgtgatgaat acacagtcac agacctcata cttgctgaga aacttagatt
      481 tccctccctt aaataaaagc aaaatgcatc atacagctag tacagctctt ttcctggaaa
      541 acccatcaag tttct
//
LOCUS       KCOD01001504             629 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 167828pyr ultra-conserved element
            locus uce-6177, sequence.
ACCESSION   KCOD01001504
VERSION     KCOD01001504.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 629)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 629)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..629
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="167828pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>629
                     /note="ultra-conserved element locus uce-6177"
BASE COUNT          181 a          111 c          128 g          209 t
ORIGIN      
        1 tgcttatctt cttgaaggac ttgggctttt gtacaagttc acaacaaaag tgaattttcc
       61 accaaataga tgcttgtttt aatccagaaa agtttcttta gtccaccatt gggaacaaaa
      121 ccactccaaa gtgattatgc caccttattg cttagatatc ctcatatatt tcttgttatt
      181 ctagttgagt actacattca gacagaggtt gccaataaag tttattgtag gagctaagtg
      241 tcaatatctg tagtaccccc cgcctagggt gcttgtaatt aaaatgccac agatagtctg
      301 ggagaagcat gaaaatttga tggcaaattg atttcaggtt catcttgaaa tttgtcctca
      361 gctggactca atactgctgg cagacattgg atggcttttg tcaaaagggt ttgctgggat
      421 gagacagaga tgccttgatc tgaatattaa atacagtgct ctgcttatga cagtttgctt
      481 actgctaaca tgtttgtgtg gggaatgttt agggtggcag cagtctattt tatttaggaa
      541 aatacattgc tttttggcac actaaagagc tgactttatt agctttaaac ctaaatgtac
      601 agcctcaaaa cttctgaatt ctgcagata
//
LOCUS       KCOD01001505             667 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 167937pyr ultra-conserved element
            locus uce-6550, sequence.
ACCESSION   KCOD01001505
VERSION     KCOD01001505.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 667)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 667)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="167937pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>667
                     /note="ultra-conserved element locus uce-6550"
BASE COUNT          214 a          127 c          123 g          203 t
ORIGIN      
        1 ccatgaatag ctcagctgtt aacaatcccc aagaaaataa tcaggcttca tgccaagcaa
       61 cttttctcaa agtgaataat attttgaaag cctgttcaaa acatagctgt gacacaataa
      121 gtttttaaag agtgaaagtg actctgaaga gatcccagtc tgggtttgaa agaagaccca
      181 gtttataacc caattagaaa gaaagcattt tactctagtg gaattctcaa gccagtccta
      241 cacgcacatc tgtttccagt gtgatgctgg tatgcaaact attgtctatt ggaagtgtgt
      301 tgtggtaacg tttgccaggg ttaaagactg ggtcaatttg atcaagaagc taaaattagc
      361 ttctgtgtgt tttcctgaaa agtactgtaa agctctttgt tttccttcag gtcttgttct
      421 cagatttctg ttcagctgtg tgaactacca taaagcagac agttccaaaa cctacttctt
      481 tcttacttgt tgttttgcaa taacagcagc agccattagc ttcgacagaa ctgaacagtc
      541 tgattctgta tttcattcat cacaagagtc taaaattcaa taaggcactc aaaatcccta
      601 cagtagtaag acagatgaaa aagttttggc tggtgaaact aaaacaaaca gaataatttt
      661 agctact
//
LOCUS       KCOD01001506             491 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 168047pyr ultra-conserved element
            locus uce-3698, sequence.
ACCESSION   KCOD01001506
VERSION     KCOD01001506.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 491)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 491)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="168047pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>491
                     /note="ultra-conserved element locus uce-3698"
BASE COUNT           76 a          115 c          111 g          189 t
ORIGIN      
        1 ttggaatcgg tctcctgggg agggagcttc taaacagagg tagtggacac cggggcaagg
       61 taaccagtgt gtcactaggc tgtggaaggg aaatccaggc ctctgcttcc atttggtttc
      121 tggcagtttg atgtttactt ggtgtccttc atgtactttg acttttactt gtccatcgtt
      181 ggcatgtgct gcccttccct gtcaactccc ttccccagga gatctcattg tacagtgccc
      241 attcttgttc tctctctccg tgtttggatg tactgctctg tgtaactcag tgggtctccc
      301 tctttctggt ttgttttttt ttctagattc ctgccgtttg ttcatcgttg tgcctaaagc
      361 atgtcgatgt ggcgttcaag tacatcgtcc aaatccttgt ctcttcagct tctctgatgc
      421 ttgaactctc acctttgacc ttgtgttgac ctttgatgct gatgtgtatt tttattatgt
      481 ttcttttctt t
//
LOCUS       KCOD01001507             478 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 168155pyr ultra-conserved element
            locus uce-2417, sequence.
ACCESSION   KCOD01001507
VERSION     KCOD01001507.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 478)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 478)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..478
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="168155pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>478
                     /note="ultra-conserved element locus uce-2417"
BASE COUNT          142 a          105 c          108 g          123 t
ORIGIN      
        1 ctgcaagctg gcaaataata agcattaatg ccctgtgtgc ttggatggat gtattgaggg
       61 gggagatttg taaatattgc ccacaaatca ttcagtgctg ctttcacagt gcagcactaa
      121 agacagacta aattagcagt ccacttcccc cgctctcctt cccactcaag tcatgtctgt
      181 ttaccctcag taatgacaaa acgtagacaa ctgtctgcta ggactgtggt gacattggca
      241 cacacatacc agacaagcag aatgttgtgg gaaacagaga ttgaagcatc ttgatatacg
      301 agaaacaatt atcatgggaa ttgttgtttc tcaatgcaac agctataata aatagttgcc
      361 atatgctaag cacagatgcc tccttgaaaa gcagccctgt gatggcacag cccatgttct
      421 ccagagtctg gggctttgat gaaatggcgg tatctcaagc cactgaagag cttaaggg
//
LOCUS       KCOD01001508             628 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 168265pyr ultra-conserved element
            locus uce-2538, sequence.
ACCESSION   KCOD01001508
VERSION     KCOD01001508.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 628)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 628)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..628
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="168265pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>628
                     /note="ultra-conserved element locus uce-2538"
BASE COUNT          148 a          154 c          155 g          171 t
ORIGIN      
        1 gaccactcaa aatatacttg aaaaaaatta aagtagtaaa aattatatgc actgctgcca
       61 acgtacactg aaactctcca aaagcaatga caggcttaca atttcagcca tcccttttct
      121 ggttcattca atattattat catcactcgc ctgttgcagt cccactgtcg ctctgcagca
      181 gtgctcctgt cactggttgt gcgttgtttg ggtttgctcc tggtgctgct ggggagggag
      241 gccctgctcc acccccaagg agcatacagg atggcggagg gggctgccca cgtttcagta
      301 acactttgtg gtcctgctgg caacggaatc gcggcggcac ctcccgaggc atgtagcggg
      361 cggcgcttgg cggttgtccg ttcggcactg ccaccctttt ggcattgttg ccaccattga
      421 ctggtggcga tggagagttg ccaattgggc tggcagccac tggttggctt aaacttggtt
      481 tcgtcacttc gggcactgca aaaaaaatca gaagaaacct gtgttagtta gactcttagc
      541 tttcagtatt taatctctga aatattgtgc agcttcaaga acaattagaa gcaggaataa
      601 gcattttgct tccaactctg tagtccag
//
LOCUS       KCOD01001509             513 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 168375pyr ultra-conserved element
            locus uce-4334, sequence.
ACCESSION   KCOD01001509
VERSION     KCOD01001509.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 513)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 513)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..513
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="168375pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>513
                     /note="ultra-conserved element locus uce-4334"
BASE COUNT          146 a          110 c          102 g          155 t
ORIGIN      
        1 cctttggcgc aaacccagaa atacacatct ttgcatgatg cacctggaca tatgtggcag
       61 gtctggtaga atcagctaat taacaacaca ggcttaaaca ggcacctcat ctggcagtgt
      121 agttagttgc ctgatggtgc tcagcaggat ttggtagtgc tttttatttt tctatcctaa
      181 tggtctgctg cccacctaat tttgccttat tgtcagccac tacttaccgc agcttgaggc
      241 cctcccagga ggctaaatta ttatcaaagg attagggaga tgtagccttg cagctctgac
      301 atttctgatt acttgtctat gccagaacag taattagctg tgactaatta agaaaaatgt
      361 tcctgccata gaaaaccatt taaaagaact gagaagtaga aaagcaattg aaaagctgag
      421 cagtgctcag atttgccgat gctctttaga ttttcaccaa agtcttaact catctttaat
      481 tacgtctctt attcgtgata tgaaaccact ctg
//
LOCUS       KCOD01001510             427 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 168480pyr ultra-conserved element
            locus uce-6811, sequence.
ACCESSION   KCOD01001510
VERSION     KCOD01001510.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 427)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 427)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..427
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="168480pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>427
                     /note="ultra-conserved element locus uce-6811"
BASE COUNT          122 a           93 c           83 g          129 t
ORIGIN      
        1 ctgttacaga aaagatctgt atttaagcca taacactgca ctgggatctc ccaggcagga
       61 tattaatgct aattcatctg ctcaccccct gctgtgagtg ttatttgttt aaatctgtag
      121 aatcccacag cgcatttata tcctcgctag agtgagctcc gctccctgta attatttaac
      181 attatatgct gatataaatt gtaacagtta aagaatggta atgagtagca acacaaactt
      241 aaccttagaa atggcagagt cagctcttaa aacaacagcc agcaactttc actgttccct
      301 gtcttttccc aagtccatat gcacaatatt gtgcatacat tatgtgtgtg cgtgtgtgtt
      361 catgctcgca ctggcagcgg tgccaggcaa ggctgtaatt atgcagaatg tactgtgaaa
      421 cttatgc
//
LOCUS       KCOD01001511             732 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 168590pyr ultra-conserved element
            locus uce-1366, sequence.
ACCESSION   KCOD01001511
VERSION     KCOD01001511.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 732)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 732)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..732
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="168590pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>732
                     /note="ultra-conserved element locus uce-1366"
BASE COUNT          244 a          153 c          132 g          203 t
ORIGIN      
        1 gaaaatacac cataaatttc taaaataaag acggccatgc ctatgaatat ccatcctctc
       61 cttttgctat taaatcgaga attaattccc agagctgctt tcctccctat gggacctgca
      121 ccagagcagg ctcacccacc agcgtgcatt ttctggagga agctgtagct tttgctacag
      181 taattgttac aagcaaagca ccgggaattt tgagataaca tattgtttct ccataacagc
      241 ttcaaacttt tacccagatg cttggttttc ttctgcttta tagcagaaca aactccccat
      301 ttttcataag acctgatgta tattgtgctt ttgactagtc cataactcag actaaagcat
      361 acaggcactt ttctacactc tgttttctca tgaaagagag aaccctgcaa gctgcagcac
      421 cagagcgaga aagaggtaga gacaatttat gattcagtga cataggcaga aggtgtgatt
      481 tatagtttaa tttgctgtcg taatggacag aggataataa catgtaaaat attaatcaat
      541 gtgtagcaac agcagacatc atttgctaag cttgttatct gctgctctac ccctgacagt
      601 gaacaattaa actgacacca gaaaaacaag agaaaatgca tgaggcaatg ccagggcaaa
      661 aaaagcagaa gcatcccaag gccactgaaa attaacaaat aaagacactg agatattttt
      721 ataatttatc tt
//
LOCUS       KCOD01001512             721 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 168699pyr ultra-conserved element
            locus uce-3065, sequence.
ACCESSION   KCOD01001512
VERSION     KCOD01001512.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 721)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 721)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..721
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="168699pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>721
                     /note="ultra-conserved element locus uce-3065"
BASE COUNT          220 a          136 c          156 g          209 t
ORIGIN      
        1 ttagattatc tactctagat ttggaattgg gattccaatt atgaaagctt atctgtggca
       61 acttaataaa aagatttagt catctacatt taatttacta catgaacttt gacttccata
      121 ctaaataaag agatgatgct tcaagagttt tcctggctca tttctttaca agtatggagt
      181 gcttgcagtt tcttctcctc tttgtgtttt gctgtccact aaatatacgt tggtggaaac
      241 tgctgtcact aaaaacatct tacctattgc acccaaagta taatgctttt tgaggttgct
      301 gctcccatca atctgctcag taaaagtagc tcatcttggt aagttgtttc gacttcacca
      361 ggacctgaag aagaggcaga aaaacctgtg aaaactaaga ctgtttcttc cagtaatgga
      421 ggagaaagtt cgagtcgcag cgcagagaaa cgggcagcta atgaagaagc tgaagacttc
      481 agcacaaagc ctgctcctgc caaaatgtcc aagtttggat tttccatagg cagtcagaca
      541 acaaagaagg catctgcaat atccatcaaa ctgggagcaa atgtaagttt actgtaattt
      601 tagggaatcg aaaagggaag tacttcgggg aggcttcctt gcagaaggaa accttgaatc
      661 ccatgagggt tgggtaaagt tgaattgcag ggccagctat acttcaagtg caggtcagta
      721 g
//
LOCUS       KCOD01001513             649 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 168806pyr ultra-conserved element
            locus uce-5597, sequence.
ACCESSION   KCOD01001513
VERSION     KCOD01001513.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 649)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 649)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..649
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="168806pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>649
                     /note="ultra-conserved element locus uce-5597"
BASE COUNT          170 a          100 c          144 g          235 t
ORIGIN      
        1 tcagcacagg atgcatgtta gagcacttag gtttgggtag ttcttttaat agcctgaacc
       61 aagtgaatcc tagtggggca cattgttagt tgttggtttt gttttttttc ttgagcagtg
      121 tttttggtta ttgatttagg gaaataatta ctgaagggtt ttctacggag aatttttttt
      181 ttttttattg caagattaat gccttggttt taataaaata ttgtatgaga cgcaacctat
      241 gatgaaaatg actatttctt actgtattta tccaacatct gcattttccc ctttaaagct
      301 gcggtctcct gtttgctaaa agaatattgg ccagtattgc agattttaac tgatttggct
      361 gatcctccag ggaccagttt ctgtgggcgt gtgttggagc aggtttgtct tacactgtta
      421 aagatacact atccttttag aacggaagat cggttcagtg gccgttgtac tgtaactgtc
      481 ctagaaaaaa aaccacggtt tttcctcaag tgaagaggca tcacaccggg tggggaaagg
      541 atagtgtgtc tttaaccctt caaactgttt tttaaaagga tgagctagct ctggagttag
      601 gtaattgtag caaaattagt cacattttct aagtctttaa agaagtatt
//
LOCUS       KCOD01001514             572 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 168913pyr ultra-conserved element
            locus uce-7797, sequence.
ACCESSION   KCOD01001514
VERSION     KCOD01001514.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 572)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 572)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..572
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="168913pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>572
                     /note="ultra-conserved element locus uce-7797"
BASE COUNT          171 a           87 c           96 g          218 t
ORIGIN      
        1 ttttttattt gtcctgtact gattttttac actgtggtac atatatgcaa ctttgtttaa
       61 tagcttataa atgttcagta gttagctttc atacaccttc cccatatacg tttttccact
      121 ttacgcttga tttttgaatt gtatcaaatt tatgtctact gtgaactttg cttaacctct
      181 attaaattga atattgcaat ctatatagtg taacgtatgg cttctttcat cagactgatc
      241 ttctgtgtta ccgatgtgga ttatcacctt ttccctaaag tgtacttaat ctttgctttc
      301 tttgcacaat gtctttggtt gcaagtcata agcctgaggc aaataaaatt ccagtaattt
      361 tgaagaatgt ggtgttggtg aataaagaaa tttcaataaa ttgttacaag ttccactttt
      421 tatagtagca atgagagggc aggagtgtct cctgtagaga agtccacatg taagattcaa
      481 atatcataga agtatcttct gagatggaag aagaataaaa ttgagtagac tgatactttg
      541 agtaaaagca taattcatga ttaattacaa tt
//
LOCUS       KCOD01001515             713 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 169020pyr ultra-conserved element
            locus uce-888, sequence.
ACCESSION   KCOD01001515
VERSION     KCOD01001515.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 713)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 713)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..713
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="169020pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>713
                     /note="ultra-conserved element locus uce-888"
BASE COUNT          193 a          163 c          148 g          209 t
ORIGIN      
        1 tcgtttttca gagaacttcg ttggttttac agtctaaatc attccacatt tgaaggactt
       61 gggtgtaggc aaaggagtga gtgcgaggtt attctagctg caagaaagag gaaatggtat
      121 ttaaaaaacc catttaatta aatgacaaca cttgggattt catttaattc acattacagg
      181 aggaatttag acttccactg ctaccacctg ctgccaggct gagctgcgag ccttgttcct
      241 gcgtctcacc gatgcaggtg aacttactgc tgaaccactt tcacagtcca gaaagcatga
      301 cattccttgt taccagtggg aggaaaggct aattgagaag tgtgtataaa agctgtaatg
      361 agtagcattt acatgtattg attagaagta gggccacagt ctctcattta tcaccaccag
      421 cagctgtgaa attttcccca cgtcgattgg catggctcat attcccgctc ctctggttct
      481 ttattgcttt tttcccccca cccgccctga accagagtgc tgatccacca gctggaatgg
      541 gctggtaatt actccggctt ctccaccagc tgccacaatt gccaaaccgc tggagtgaaa
      601 aattccatcc tgcatttccg attttttaca ttaccactgc ataatcatat ttgacgaata
      661 attaacccgg gttaatactt cagggagcca tttgcaagta aattgataag ttg
//
LOCUS       KCOD01001516             330 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 169129pyr ultra-conserved element
            locus uce-29, sequence.
ACCESSION   KCOD01001516
VERSION     KCOD01001516.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 330)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 330)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..330
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="169129pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>330
                     /note="ultra-conserved element locus uce-29"
BASE COUNT           88 a           82 c           83 g           77 t
ORIGIN      
        1 cctcttatca ggctctcggc agcatttgtg attcatagca gtcatcaaag tgataataaa
       61 ctcattcaca atactaacaa acatggggct cccagttatt tacgaggcaa attcacagcg
      121 atgccgggca gtggaacagg ggagaatcaa gatggtgttg attgataaat tgacaggtta
      181 atttacaagt ggataatagg agttagaccc agagggagcg ccagcagccc cggctctagc
      241 ttggttgcac tgccatctgt cttgtgcctg ggaatctgct ccggccgtct cccgccggcc
      301 aggtgacctg cacctacaga aatgccacca
//
LOCUS       KCOD01001517             405 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 169235pyr ultra-conserved element
            locus uce-575, sequence.
ACCESSION   KCOD01001517
VERSION     KCOD01001517.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 405)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 405)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..405
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="169235pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>405
                     /note="ultra-conserved element locus uce-575"
BASE COUNT          123 a           72 c           73 g          137 t
ORIGIN      
        1 catgaaccag agcgcctggg cttgaacggc atcgcagaga ccacagtggc catggaagtg
       61 acataaccgg tgtgctcctc tgttccaact gaatgcaaac acagcactct gtggatatta
      121 tatcgtgtat taagtcgata tatgaaaatc actaccttgt aaaatagttt atttgtatca
      181 tcaatattat ttctgttact tgaatagtag atattcatca tcatgctttt gcacttgaat
      241 ttgcaactga atggataatt ctttaatggg atcatgagca tgacatggga tcctgcatca
      301 cttgtttaaa ctatttattt tgccatgttt acattttgta tcttgtacaa ataaatgcaa
      361 ctttgtgtct aaagattcat agctaggaaa caaaattctt gtaat
//
LOCUS       KCOD01001518             763 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 169343pyr ultra-conserved element
            locus uce-7996, sequence.
ACCESSION   KCOD01001518
VERSION     KCOD01001518.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 763)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 763)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..763
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="169343pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>763
                     /note="ultra-conserved element locus uce-7996"
BASE COUNT          211 a          169 c          167 g          216 t
ORIGIN      
        1 ctttacagta cagtgagcag gtgttaaacc tgctaaagtt tttattaaca ctatatgttg
       61 gcatatttgt gaattatgtg tactttttat ttctctttct caaacctcct ttcaaattca
      121 agagggtttt ttttttttta atgctgtagt agcagaagcc catagtgttg ttgagagctt
      181 tgtccttatt tcacagatgc actgggaatt gtttttaatc tcctttctgc tttcccatta
      241 cagatggtga tgacgaccca caactctcct gggtggcttc atctccctcc agcaaagatg
      301 ttgcatcacc cactcagatg ataggagatg ggtgtgatct cggcatcggg gaggaggaag
      361 gggggactgg cctgccgtat ccctgtcagt tttgtgataa gtccttcatt cgcctgagct
      421 accttaaaag gcacgagcag atccacagtg acaaactacc tttcaaatgc acctactgta
      481 gccggctttt taagcacaag aggagtaggg atcgccacat aaagcttcac acaggggata
      541 aaaagtacca ttgccacgaa tgcgaggctg cattctcccg cagcgaccac ctcaaaatcc
      601 acctgaaaac ccacagctcc agcaaaccat tcaagtgtac tgtgtgtaaa cgtgggtttt
      661 catctaccag ctcattgcag agtcacatgc aagctcataa aaagaacaag gaacatatgg
      721 caaagactga gaaagaggtg aagaaggatg attttatgtg tga
//
LOCUS       KCOD01001519             628 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 169453pyr ultra-conserved element
            locus uce-5024, sequence.
ACCESSION   KCOD01001519
VERSION     KCOD01001519.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 628)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 628)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..628
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="169453pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>628
                     /note="ultra-conserved element locus uce-5024"
BASE COUNT          172 a          138 c          117 g          201 t
ORIGIN      
        1 cccaggagtc ctctcctgct atctgattgc actctaattt ccattgtatt cagtctgcta
       61 tagaaatact taatgtcagg aaggagatat ttactggaat atacaagtcc agaattcatc
      121 acgattcagt gtgaaatccg ctcacccttt gctccccacc ccctcttgaa ttggaatgaa
      181 atgtgcctta aactgaagtg aaatacatca catgcagcaa cagtgggccc tcgcttcgcc
      241 tctattcctg gtgtgaaatc gatacactat ctttcctcct gacctgttct gtgacctcca
      301 ttgcagcttt catgctgaac agcaattgct ttgaacagtc tggctctgcc acagctcaca
      361 aatgattctc agcttctgtc taaaactggt gctgataaca aaggcttgat tttaaataat
      421 gcagttgtag tcatcttcta attatgaatt acatgaaagt gcgtggtctt ctattattca
      481 atagcatgtg cagtgtgttt gcagccagaa taactcctct ctgagaagac aaggagttct
      541 gttcttaaat gtgtctgata aagtttgttg ttatggaaga ggagaaatat ggcaaatact
      601 taagaacaca ttttctttat ctctgact
//
LOCUS       KCOD01001520             588 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 169564pyr ultra-conserved element
            locus uce-171, sequence.
ACCESSION   KCOD01001520
VERSION     KCOD01001520.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 588)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 588)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..588
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="169564pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>588
                     /note="ultra-conserved element locus uce-171"
BASE COUNT          187 a          144 c          129 g          128 t
ORIGIN      
        1 gtctgtctgt cccacaccgg agatgctcta ctcagagcct gcacttttac atggggaaaa
       61 gccattcttc caggccatta atattactac ggagacgtct tcataattac agcagatctc
      121 aaagtgccac aaccaagacc agcaccaaag ctaaaataac tcgcaggagc aggcgagctg
      181 cttttgcagc cctcagtccc agaaatgctc ggtagctttt cttaaaatag acagcctgta
      241 aataaggtct gtgaactcaa ttgaaggtgg ctgtttctga attagtcagc cctcacaagg
      301 ctctcggcct acatgctagt acataaattg tccactttac caccagacaa gaaagattag
      361 agtaataaac acggggcatt agctcagcta gagaaacaca ccagccgtta cgcacacgcg
      421 ggattgccaa gaactgttaa ccccactctc cagaaacgca cacaaaaaaa caagttaaag
      481 ccatgacatc atgggaacga gagggagaga gggaaggagg gagagagggc acccgtggat
      541 aaagcgcaaa caattttcag gttcattttg atttctctgt gcctaata
//
LOCUS       KCOD01001521             687 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 169675pyr ultra-conserved element
            locus uce-7586, sequence.
ACCESSION   KCOD01001521
VERSION     KCOD01001521.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 687)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 687)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..687
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="169675pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>687
                     /note="ultra-conserved element locus uce-7586"
BASE COUNT          235 a          128 c          167 g          157 t
ORIGIN      
        1 acagaatgaa agaaaaagca tttcagcttg taagggataa gactctaagc aagtgaggga
       61 tgatatgggt taaaattcac cttgcttctc actcctcatc cacgacggga ttttggagaa
      121 caacggacat ctggaaatcg gttttacaca gaaaaataga aaacagggaa gaactaggaa
      181 gatgaataaa ggctcatcac agacacaaaa gaccagagga aaaagaagct tggatttggg
      241 tattcttgtc tggcaaggag gcaggcagta aggctaatga agcatttgcg atatgggacg
      301 tatgccagcg taacaaagaa gatgtgcatc agctctgcag atgtgccaaa gcccccagag
      361 caaaataatg acataatcac catcagtgtc acagaccaga ctgtacacaa ggtgacatgg
      421 gagagaataa ataagggtct ttagaggcct gtagtacaca cacgggaagg aatagccatt
      481 cctcacaact gccacaagag agtggcgaga tgttgggtat aatgtgtgca gctagcaaaa
      541 gaaatcttga attgtgcaag gctaacacac tataaattgg tgcttttctc aatctccagt
      601 tgacgtttca attcccacta ccccttgttg aatgcagaat gaaatggcac taggagccag
      661 aagagtttgc caagttttgt tttgttt
//
LOCUS       KCOD01001522             663 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 169779pyr ultra-conserved element
            locus uce-3696, sequence.
ACCESSION   KCOD01001522
VERSION     KCOD01001522.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 663)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 663)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="169779pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>663
                     /note="ultra-conserved element locus uce-3696"
BASE COUNT          201 a          122 c          122 g          218 t
ORIGIN      
        1 tatattatgg tgtttgatga aactacctat cagaaaatta cttgaaaacc tttgaacaat
       61 taaactttgt caaactgatt agcttgctaa agatctgatc attaagagtt tagattgttt
      121 ctctgttaaa tcagatatgc ctcctacaat ttttacaata cttcctttat aaattaattg
      181 ttctgtggtt attaaagaat ctcccccaaa aagcaaaatc tcagtagatg tggattttac
      241 actgcactag atcaatccca ataccagtaa atggatatta ttaaacagca tggggtagtg
      301 caaactggga aagaaaactt gtagtgtgct gcctttgagc agacctggct tgcatgctgt
      361 gacagggcaa ttgtcgacat gctttttcat gccaatctgc agctttttca actctagatg
      421 ctatggcaac cagggtttaa cagactaagc agctaacaag cttccctgat ggaattgtct
      481 ggttgtatga ttgccttgtc ttagtgaaaa tataaaatag actgaagaca cttgtggaca
      541 tttgtcaaac tgattataat ttggacactc agctcataat tatccgttat acattgcata
      601 gtattgaccg tcagtgtttt ccatgctgtc tgtagagaac ccaagtgcct ttctgtacgg
      661 act
//
LOCUS       KCOD01001523             434 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 169889pyr ultra-conserved element
            locus uce-6716, sequence.
ACCESSION   KCOD01001523
VERSION     KCOD01001523.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 434)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 434)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..434
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="169889pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>434
                     /note="ultra-conserved element locus uce-6716"
BASE COUNT          152 a           83 c           71 g          128 t
ORIGIN      
        1 aatgcatttt ccactgtcca gcagctagtt aagaagatta atgactgctc tgtagttcca
       61 attaaactcc tttatcacca agagggtcca aacaagtttt gatttcaaaa gcactgctta
      121 agaaagaaga ccagggctgc ataacactga cattttatta gaattcatct gtaacaaatg
      181 gaacttgtgt cagcaaagaa ctgattttca tacagacttt cttttgccac caatgtaacg
      241 aagtaagaaa ataaaaagca cgcctttcat tctgtaaaac atttacgcgt actactaatt
      301 agaggtaatt gtaattttac aaggtttttt ttaagttttt cagtctatgc atccaaaaca
      361 agagcaaaga acaccaagct tgaaaaagcc acataacgga tggttataat gagacctgca
      421 gccttctgat atct
//
LOCUS       KCOD01001524             779 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 169999pyr ultra-conserved element
            locus uce-418, sequence.
ACCESSION   KCOD01001524
VERSION     KCOD01001524.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 779)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 779)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..779
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="169999pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>779
                     /note="ultra-conserved element locus uce-418"
BASE COUNT          251 a          150 c          134 g          244 t
ORIGIN      
        1 catttgtttt ctttatagta ggtcttttaa aagggagtca taactgatgg attacaacat
       61 gtttctacct tttcaatctg aatttcataa gaataaaata aaccacaaat gaaagtgctt
      121 gtaccaggca cgttgaacct ttcttcttct attagcatat cagtctgcaa tcataactag
      181 atcaatagcg aagatatctg cttaaaagag caccatgctt tcttttgtca gaaattcatt
      241 actttttatt agggtcattg cttgaaaact tcaaaacacc atatggacct aattgtggtt
      301 tattttggca aaaaggaaga cactgtagaa caattgaggc attacattct acaattccat
      361 tactttcatc cctctccgtt ttattactgt gtcattaaag gcaacttgag tgagcgaaga
      421 attatagtgt catgtgtacg ggctagtaga ttaataacaa aacacactca agtttaaagg
      481 tatctaacag ctgttttcat tattttgtgt aaatacgctt gaagcatatc tatctgatta
      541 gtggatagag tgctcttctc tgtcacatgc catgggcact gctatgtgca agtaatcaaa
      601 gtgctcagaa aatgagttta cattgttcac tgctgaaata cacaaatgtc agaaagtgac
      661 tgcgcatcaa agcttaggca aatcagctgc tgcaaacaaa cagactccaa tgcacatcgc
      721 agctttaaac attcctctgc agcacaatga ctgaacagga cttattgcca gcccaaatg
//
LOCUS       KCOD01001525             831 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 170101pyr ultra-conserved element
            locus uce-188, sequence.
ACCESSION   KCOD01001525
VERSION     KCOD01001525.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 831)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 831)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..831
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="170101pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>831
                     /note="ultra-conserved element locus uce-188"
BASE COUNT          278 a          171 c          144 g          238 t
ORIGIN      
        1 aatctgatgt cacagagatt taattaagaa agcccatata aacttcacag aaaacaatgg
       61 ttaactgtga ttctttgcca attatcaaat tttaaccctc aaaaatctta ctagtgattt
      121 cttgaatgtg aaataaatgg ctaggctttg ttacaggtaa tagtgctaag ttatgaatgc
      181 tgatggcctt cttgtacagc cttaaattac attgaaaaag atacagtttc tttaattaaa
      241 aaagctgcac tgaactaatc cctctagctg aaaaaagaaa agttttaagc aatctctttc
      301 tgctctggga gagaaaagca gacaatacca taacagatca gaaacataag ctatagtgtg
      361 cagccaggag cacagcaggg aactgaatac tgctccgact gtgtcatttt ttaatccccc
      421 atcccagttt tccccgtctg acctcatgct gagatgaagt tatcacagaa gacagcttta
      481 ctcttaccaa tgaatccaac cctggatctg tattatcctc agcagatcaa aacaccgctt
      541 tcatcaaata gcattatctg cataaaaggc atgcaattgc ctgataattt cacccaaact
      601 atgctattca tttaaaggac aagaagagaa atgtaattca ttcctttttt ccccctggaa
      661 aagctaactt agacttcact catgggaact tttcaacagg agatctcaag aagaggtcca
      721 ttaaaagttt ccctctggtt tacaattaat tgttagagta cccctgcgcc gtgtgagtga
      781 cacaagtgta gttatgcaga aaactggcag ggagaattca caaagcttgc t
//
LOCUS       KCOD01001526             575 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 170210pyr ultra-conserved element
            locus uce-1485, sequence.
ACCESSION   KCOD01001526
VERSION     KCOD01001526.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 575)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 575)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..575
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="170210pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>575
                     /note="ultra-conserved element locus uce-1485"
BASE COUNT          176 a           93 c          127 g          179 t
ORIGIN      
        1 agagtgtttt agtcatttta ctgttgttag aatggcaagt tgtggttata tattttaggt
       61 gtttgcaaga aattattctg aaggcttcaa gttccctgcc atttccaaga cagccagcaa
      121 ctagtattct acaagagctt tgcatgggtt tttctgttcc cgttgagggt gggggaggaa
      181 agggaatgta tgtgcgtatg tgtgtgaagg tatatagata cctccttcgt agtaatgttg
      241 tgaggaatcc tcataaggcc tatcgtagcc ttgttcagga tacgacggtt gctgataacc
      301 gtaatcatta tgacctacat caattcgaca agagacagga agaaacgtta atggcctctg
      361 agtgaaaacc ctaaaaatat ttcatttctc agaaaaatgt ttcaactgga tatacatgaa
      421 aaagaatttt caattgtatt agccaaagac ttactaatat gatttccttt catattgaat
      481 taacatgtga cagaaaaaaa aggcttaatg cagtagttct agaaacatca cagcaaggga
      541 tggtcttaac cttccgacaa tccttgttgg gggag
//
LOCUS       KCOD01001527             655 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 170319pyr ultra-conserved element
            locus uce-5136, sequence.
ACCESSION   KCOD01001527
VERSION     KCOD01001527.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 655)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 655)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..655
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="170319pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>655
                     /note="ultra-conserved element locus uce-5136"
BASE COUNT          180 a          149 c          165 g          161 t
ORIGIN      
        1 agagaagcag taatttgttt gccattgccc tcaagccagg aaatccaaac ctcaagcatt
       61 tcccaggcca cagcacattg gagtggagag agagtgtcag ggaatggctc acacatcccg
      121 acaggagcgc acgcgcggag ccagcgccgg gattgttcca gcaccaccgc ggttaagatg
      181 ctgagacaat ctcgagtttt caggccatag ctgtcaggat gctttggtat attcatcacc
      241 ccccactcca tggtgataaa aatttacaca gccaacgaaa cgaagattaa tttcatgtga
      301 aaagctgaca gaatggccca tgtcattgct ttatttgtgc cagcactcag taactcggtg
      361 caagttccat tgaggtggca gacatcccgt ccccttgagc catctcgtct cctctctaat
      421 gatgccaccg ttttgacaaa accaagcaac acagccggta tgtgcgaatt tggaattaat
      481 tttcttcaga aaggtcaagt atgttaatga gcttttggct gcctgtgttt tctctcttgg
      541 gcccctgtta atggggaaag aaaaggggag aaataatgaa ggaaggagga aaagaaggaa
      601 gcaagaggca ggattcagtg tagttttcat gggttcttct tttccagggc tgagg
//
LOCUS       KCOD01001528             663 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 170429pyr ultra-conserved element
            locus uce-538, sequence.
ACCESSION   KCOD01001528
VERSION     KCOD01001528.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 663)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 663)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="170429pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>663
                     /note="ultra-conserved element locus uce-538"
BASE COUNT          198 a          146 c          111 g          208 t
ORIGIN      
        1 aaaaataaaa gtttgcagag agcattttaa acatggatta cccctcaatc ttcttaataa
       61 aaatctctca agattttaaa atatggacag gatttttgca agcttaaaga cagaaaacag
      121 tacaagttgc ttaaacatca atgggttcaa aaaagttgtt aaacttactt tatttttgtt
      181 tccaaaactt atatgtttct cctcccttgt gtgctgaact gtgcactaaa gctgtgtctt
      241 tgaaaggtag ttcccatgat atgacatcca gcgcctttga ctgcctagag ataagcacct
      301 gcgtttgtgt cccctcttta cgtcacacct ccctattcaa accttctcaa tatgattcac
      361 atttgcacat caacagcctc atgcgcatac acagattttt ttcggctctg ggcccaaaac
      421 tttcacttta attttcatca catgattgct gtggcatatg tccttccaaa cctcccatat
      481 atcagtcatc atgcaaatga gatggaatat cactcctctg cagcagatgg ccagggatga
      541 taacaatggc tcaacagagg agattcaatg tccctgactt tatcgccacg gcaacaacaa
      601 cctaaaatat atgtaatgga agtggtgctt attaattttg caggctcgag tgttctgatt
      661 ttg
//
LOCUS       KCOD01001529             729 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 170537pyr ultra-conserved element
            locus uce-6574, sequence.
ACCESSION   KCOD01001529
VERSION     KCOD01001529.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 729)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 729)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..729
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="170537pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>729
                     /note="ultra-conserved element locus uce-6574"
BASE COUNT          232 a          137 c          150 g          210 t
ORIGIN      
        1 caatacagtg cgttaacctc agaatatcaa attgaatcag ggtttctgag gagagctggc
       61 tccaaagcag ttagaatgac actattcatt acactatcta gattcaggtt tcagacaacc
      121 ataaccagtg ctttcacaac ctctcaccta aagtcagata acgtacagcc actcaaataa
      181 gtgactgaat ttccctgcaa gtgcttctga atctctcgaa atgtggagcc tgtggaggcc
      241 ctgaaaactg agactaaaat tgttatgaag agactttact ggatgaaatt tttccttgcc
      301 aggcacaaat aaacagctct caatagggta ctcaccacac agtgtgtcag cacatattat
      361 gcagtctggt gctgagtgga tgtgtcagct gcccattaga ccacactaaa atagaattgc
      421 tgggagcctg aagcatgaag catgatatta gataaagtga tgaaatttca ctcgattaaa
      481 gagccaggtc aaggacagtt acctcaggaa acctagaata ttctcacaag tttgataaat
      541 ttatcctcct tttccgctta ttttcgatta tcattcaaat tatatgaatg gctgcattta
      601 cacttgctgg cttacgacat attggggatg acagggatgg tagattttta ttatgtaaaa
      661 aaggggagga ggcagaaaat gctccatatt aaagactata ggaaatgtta gattgattgt
      721 ttgtgtttt
//
LOCUS       KCOD01001530             514 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 170646pyr ultra-conserved element
            locus uce-4279, sequence.
ACCESSION   KCOD01001530
VERSION     KCOD01001530.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 514)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 514)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="170646pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>514
                     /note="ultra-conserved element locus uce-4279"
BASE COUNT          164 a          102 c           87 g          161 t
ORIGIN      
        1 tttcaaaatg attgtatcag catttgcaaa acattagtcc actttcaaat actcacgagt
       61 ttgctattca gagcaacgga agtttaatca ttacatcaat atttacttaa ttagaaaagg
      121 gatagtagcc ttgaataaat acaaaccctg ataaaaagaa agcagcatgc cagatatctc
      181 tgaagacagc gccaatactg caagaggtgc ttgtaccgta gctctgcact gttccctcct
      241 gtgtgttatc tgtggtacta gagccatctc cttccctatg tacctccaaa tgtgctgctt
      301 tccttaattt ccttcatcag aaaagattaa aatgggaagg tagctttgta agtgcaatct
      361 gctagttcta taatgtgttc agcagtttaa gcatgcaaaa acaagcaaga tttcaaagtt
      421 tgtcgtatca atttaataaa ctccatttaa tgcatttcat tatcagaggc ttacagaatt
      481 cactactgca gtgtttccca ttttaatggg acaa
//
LOCUS       KCOD01001531             636 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 170749pyr ultra-conserved element
            locus uce-4088, sequence.
ACCESSION   KCOD01001531
VERSION     KCOD01001531.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 636)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 636)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..636
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="170749pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>636
                     /note="ultra-conserved element locus uce-4088"
BASE COUNT          179 a          100 c          130 g          227 t
ORIGIN      
        1 cttgctactt aatttactta tgttaaaata tattttattg taatcatttg tagtgggaga
       61 tttaccctgg aagagatgtg aaacatgcac agctatttct gttagtgctt tatttcaggc
      121 aaggtttttt gcattgctct agccatgcag cgatctgtaa agggaaccta ctccgataca
      181 gtttgaaaag tgcattttgt acttggctct ccctttgatc gaattaatct ggtctttttt
      241 gtagttctaa atgaggccta tgggctgaca atgtagctgt ttaaagggga ttttagggga
      301 taatagccaa tgcaaatagt gccatgagaa tggcaacttg cttttgcact ttcaatcaca
      361 taataacagc aaagaaagct tttaaaatga attgaaattt tgtggcttgc catctgggat
      421 tatttgggga aacagttctg aatactatgg ttgtgtaaaa gaatggtact atgggacact
      481 cttaagctga catgtttcag atggcaccct tatgctaact gctgcaaagt tggctagcat
      541 tattattttc tttcttctgg attatctgca aaaaattctc tttgctggta tttggggctg
      601 aaaaactttt ctattgttaa agaattcaat tcaaac
//
LOCUS       KCOD01001532             683 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 170859pyr ultra-conserved element
            locus uce-7902, sequence.
ACCESSION   KCOD01001532
VERSION     KCOD01001532.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 683)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 683)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="170859pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>683
                     /note="ultra-conserved element locus uce-7902"
BASE COUNT          217 a          123 c          122 g          221 t
ORIGIN      
        1 catatcacaa agagaattgg gtcatctcag ggaaatataa aagcattatt cttctgagat
       61 ttgaaaaaaa tacataatta cttcttccac caagcatgat tcttttaaat aaccttcatt
      121 tttgtccctt ggaaatgaaa agaggtttac attaaaaagg catttcctct gactctctgt
      181 ccttgagcag cacaaaatgt aaactatacc tttcccttct tcctttgaag aaaaaggagt
      241 ttcaatcttc ttctgtgaac acggtccatt taaataagga gatggagtcc catcttttcg
      301 atcagctttc tttgtttgac ttgtcagtaa taacacttta gctgaaattg tacaggcgtc
      361 ctgctaattt agtaattatt gacacggtgc tgggcaagaa atgatagcaa acacagggaa
      421 ctgttaagaa gaaatgaaat aaaagatctt catatcattg ttgaataatg gttgagatca
      481 ttttgtgctc taagtaggcc caagacacct ttttccattt tctcgacaca tttataattt
      541 atgctttgta atagttccaa atatttttag gactccgcac tttgtttgag aatccagaag
      601 aactgaatga gaatcacgga gtgcacacac agatgagtga ggggtgtgac ctgacatagc
      661 ttttgattta agaatgatcc ctc
//
LOCUS       KCOD01001533             537 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 170966pyr ultra-conserved element
            locus uce-3369, sequence.
ACCESSION   KCOD01001533
VERSION     KCOD01001533.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 537)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="170966pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>537
                     /note="ultra-conserved element locus uce-3369"
BASE COUNT          153 a          111 c          104 g          169 t
ORIGIN      
        1 cccttctgtt taagaaccaa cgtgcaccaa cctcgcagtg aaatattgca ctttcagtag
       61 tatttggatt cttctgtttc agcacaagtt tctaagaaaa ggaagagaga caaaaagata
      121 gcaaaagaag gtgatctatc aagctctaga gaatacaagt gctgctgccc tgggcagttt
      181 cactacagca ctggagaaaa caaagactac tatagcagcg tcgggacgtg ctcttttgaa
      241 gctgttgagt aggcacaaac ttcttgtttc agatcaagcc ttgtatcttc ttcagttaag
      301 ttgcctcttc tttggtcttg agttttcctg atctgaactt gaagcagcag tttcaggtgg
      361 taaattctgt tctgttccac ttcatactgt atcacttcaa aggaaattct catcaaatca
      421 gtttgcaagg gaccttccat ctagttccaa gatcaattct ataattacag gtgcatttcc
      481 tctattaata cagtaggttt aatccatgtt aggaaaagtg tttggcattc ccatttc
//
LOCUS       KCOD01001534             589 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 171076pyr ultra-conserved element
            locus uce-905, sequence.
ACCESSION   KCOD01001534
VERSION     KCOD01001534.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 589)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 589)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..589
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="171076pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>589
                     /note="ultra-conserved element locus uce-905"
BASE COUNT          203 a           97 c          126 g          163 t
ORIGIN      
        1 tttaaggaaa agcactattt ataaaataaa tataaaatca ggtctccatt ttgcacaagc
       61 gacaaattat gagagctcca gcagctgtat atttgttgaa cacccgcctc ctgtgagtat
      121 aaattgcacc ttactgagta gaaataaaat acagtccacc agagactttg ctgcaaggtg
      181 tagctgcttg tgtatgggca agtaatgact tgcattttca gctgctcctt agtaagagcc
      241 ttagtaattg gaatcagtta ttcaaaacat ctctaaatgt gatttaaatg gcaaggattt
      301 aataacatag aaagaagtca ttacggaggt tcaagcaggg gagaagggaa ttccgttttt
      361 cagagcagag ggagaaaaat aaagcaatta cttgatgtaa aggccagaaa caggactcct
      421 gctgtcacag agaaatcaaa tctgtcagca attagtggga tcttaggagg caaagaaccc
      481 ttcagtgttg aacagtgaat aaggggttag caattatatg aactgataaa agtgttctgg
      541 ttttcaaaca gcaggttaac aaggcttact tttttcataa cttcatgca
//
LOCUS       KCOD01001535             279 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 171183pyr ultra-conserved element
            locus uce-94, sequence.
ACCESSION   KCOD01001535
VERSION     KCOD01001535.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 279)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 279)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..279
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="171183pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>279
                     /note="ultra-conserved element locus uce-94"
BASE COUNT           99 a           44 c           50 g           86 t
ORIGIN      
        1 cctgacaaga caaattaccc gtaatgagtg cagtagctga agggtatact tttattttaa
       61 aatatgtcaa taacccagtg actaaacgaa tattgattca gcataatgaa gcctgagtaa
      121 tgtgaaaatg agctcttcaa ggagcatggt aaagactttc tttttagctt gtagcaagaa
      181 gcttttcatt ctttactatt aggtagttga aatgtgcagt cttaaacaac tcatccttaa
      241 acattagtaa tatgtggaat aacgtaacaa aagaacttc
//
LOCUS       KCOD01001536             674 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 171290pyr ultra-conserved element
            locus uce-754, sequence.
ACCESSION   KCOD01001536
VERSION     KCOD01001536.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 674)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="171290pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>674
                     /note="ultra-conserved element locus uce-754"
BASE COUNT          236 a          136 c          115 g          187 t
ORIGIN      
        1 aaatagcttt gaaatgaagt ttcctaaagt cattaaagac taaagtaccc agagcttctt
       61 ttgttggagt cctgaattaa aaagaaaaac aaaacaaaaa ccccaacaac aactccctcc
      121 ccacaaagtt cagagtagaa aaattaaccc tgggaaaatc tggaaagcct gagattatac
      181 cagacattca tcctcaagct gatttttttg tacaatcctg tgttgtgctc aaaacaaaaa
      241 tctgagaata ctccttaaag cggaaaacaa agctctgctc cagccataca tctgtgagtt
      301 ttgaaacaaa ggtttgtttg tgtgcctcaa tcactcttgc ctatgaaagc agacacttac
      361 ttgaaaaact tttcagggaa acactctaaa ccaacatcct ggtataaatt tgcaaaatgc
      421 aatacaggcc tgattgtctt tggagaggat gcaggccgca tacgaatagc tctttctgaa
      481 acgtaatgtt ctttgcatgg ctcagtggct aatgtacaat aaatcaacaa aagaccgctt
      541 caagaaagct attgggcagc agcaaggcca ctgttatttt atctttttac agtatttaat
      601 tggaagtttt tcctgaaact ttacccaacc ttcaaattac tagactctgt ataagaagag
      661 attgataaga tgaa
//
LOCUS       KCOD01001537             560 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 171401pyr ultra-conserved element
            locus uce-7548, sequence.
ACCESSION   KCOD01001537
VERSION     KCOD01001537.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 560)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 560)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..560
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="171401pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>560
                     /note="ultra-conserved element locus uce-7548"
BASE COUNT          176 a          112 c           98 g          174 t
ORIGIN      
        1 tcaaatgtat taaatccagc tctgagtttg tggcccagat ttgagactaa catgctgttt
       61 gatttccctt aacatgacta gacccatgaa gtgtgcatgc gtgtccatgt gtcccctctt
      121 gtacccattt ctattgcatt tcacatttct gtcaatatag cctccaatat ttgaatccac
      181 tgatagaaca gatgcagtaa ttgcaaacag ctgtaaagta ttactcatct tgctaatcaa
      241 aatgactttc tgctaaataa accatgaaaa aagcttttcc accatcagtg aagtggagtg
      301 gaaatgatac agactgtaaa gagtccacca tggaagtaaa atcaacagat caagtgttcc
      361 tacaacaatg attctacgtg ttaatgcaca tttccaaaat tgttatagaa atttctctat
      421 gtttaggaaa atgaatttgt gtacacaaat gttcctccag gtattttacg tgataccacc
      481 agatacacag agccgaagaa ctgctttatg gtttctcaag attcataatc caaggggaga
      541 tgattgcccc gtatggtttt
//
LOCUS       KCOD01001538             451 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 171507pyr ultra-conserved element
            locus uce-2073, sequence.
ACCESSION   KCOD01001538
VERSION     KCOD01001538.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 451)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 451)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..451
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="171507pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>451
                     /note="ultra-conserved element locus uce-2073"
BASE COUNT          163 a           75 c           73 g          140 t
ORIGIN      
        1 aagaagtcaa tgtgattttt taaatactga agagaaatgt ttttagatca tctgaaagtt
       61 ttctccttct taaaaatatc aaaatagata tcaaacgaaa aagggtatat actattttgc
      121 cttttttttt aagtagaaag attgactaga tattaacaca aatgggttta aatgtgaagc
      181 tgccataaaa gcaggcacat aaatgtaatt ctcccagccg ctattttgat gcacattttt
      241 gattccatga atattttatg aaatggccca aactaaagcc atataacatt cctgcattac
      301 tgatgcttgc gcccgtaagc tacaaacatt agaggcatga ttgagtgcat taaaatgaac
      361 tcattcagca gtgcattgat tacttgaagg aagttactcc cacttaagaa aacagcacac
      421 aaacctgaag ttttcaatac tgaaattagc g
//
LOCUS       KCOD01001539             684 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 171613pyr ultra-conserved element
            locus uce-4874, sequence.
ACCESSION   KCOD01001539
VERSION     KCOD01001539.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 684)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 684)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..684
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="171613pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>684
                     /note="ultra-conserved element locus uce-4874"
BASE COUNT          226 a          109 c          130 g          219 t
ORIGIN      
        1 ttaacttgaa agctttgtaa cccagacaaa atatttctgg aataagtttc atttaagaca
       61 gcagaacaac agtgaagtta gaaacaggtt tgtgtctttt tttcatgact agcccatgtc
      121 tattctctat gaaattgatg tcaaaaaagt attatatatt ttcagtggga aatagaaggc
      181 tgccctctac tatccttgtc aggacgtcgt atccctttaa tcatactttt catttcagta
      241 cattgaaatt tccgttacca aggacaacat cataaataaa agtgtttgtg aaatttttac
      301 ctgcagcttc ctaactttgt gcattaagca tgagactagc agagaggtgg tcaaatgtga
      361 aaatttataa tcatttatta cgtacggctg aagcgagaag ggaataaaag cgtgaaggca
      421 tacatctata aactggagca gaaaagctta aatgaaaagt aaagtgaatt tctgtgtctt
      481 gtcataaagt aatgagaagc tagagcttta ttcatagcaa cccaagatgc atttactctc
      541 aatctagctt tagcagtaaa tgcttccctg atgtattgct tcggacttac aaagaaatat
      601 ttgtgctcta cataatagta tagttaggag aattactgca tggctgagga gattctataa
      661 aggtttatag ctggtgctgt tact
//
LOCUS       KCOD01001540             557 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 171721pyr ultra-conserved element
            locus uce-1173, sequence.
ACCESSION   KCOD01001540
VERSION     KCOD01001540.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 557)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 557)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..557
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="171721pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>557
                     /note="ultra-conserved element locus uce-1173"
BASE COUNT          171 a           89 c          112 g          185 t
ORIGIN      
        1 tttggcaact gtagtgctgt gatttatata caacttgtag accttagcag caaatgctca
       61 tcattttaat ggtttcagca aggcaactgg cttgcatcag tcttgcagtg cgaggctcat
      121 aagactgtgc atgtaatagt gatactgtca tgtgttaaat gagcatagct tgaagtatta
      181 ttaaaattga aaggttgtgg cagtaataaa aaggttgaat ggtaatgtct ctaattgaac
      241 agtaaggcct ctttcctact aagtcactct ttcatctgtc tttttaatta ttgcattatc
      301 attttgtact gcagttcaca atgaaacgac catttgtgtt taagtgaaag ctaattatta
      361 ggactgaatt attgtgcagt ttattgatcc ctatggtgga ttaagggctt taagttcgtc
      421 tagacagaat agttagcaaa atgacaaaag gaaacatata agacccttgg gaagaatccc
      481 cacgctccat aagcaattaa tgcctgccag gtaatggaat ttaagtttat actaaatcta
      541 gcagtgcttt gacattt
//
LOCUS       KCOD01001541             291 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 171827pyr ultra-conserved element
            locus uce-5582, sequence.
ACCESSION   KCOD01001541
VERSION     KCOD01001541.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 291)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 291)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..291
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="171827pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>291
                     /note="ultra-conserved element locus uce-5582"
BASE COUNT           80 a           54 c           58 g           99 t
ORIGIN      
        1 tgtatacctt taatgccact tacttttact ttcataccct ttcttatttt tattttagta
       61 tgtaaacaga caattcatgg cagagactca gttcagcagt agtgagaagg aacaggtaga
      121 tgagtggaca gttgaaacgg ttgaggtaag atcttgtgta ctgcaggtaa aattgcaatc
      181 cctgtttctg ctggctcaca attcatgata ggttttagtg ttgcatccct tctccccctt
      241 taagtaggct tggactcaat tacatactta gctcaggagt acttgaaata a
//
LOCUS       KCOD01001542             694 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 171935pyr ultra-conserved element
            locus uce-6688, sequence.
ACCESSION   KCOD01001542
VERSION     KCOD01001542.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 694)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 694)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..694
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="171935pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>694
                     /note="ultra-conserved element locus uce-6688"
BASE COUNT          236 a          111 c          122 g          225 t
ORIGIN      
        1 tgaagagtca tgtaaacata atgcactggg atctgatctg gttttgattg gttttgtggt
       61 attttgcaag gcagtacatt ggagtggcat ggtaatcaag gactattata acctagagtc
      121 agcaataatg agaacggaac ctctaacttc aaactataag ataacacatt gattaataac
      181 catgggatga ttagtcaatc caaggcctta atgcacaatg gagaaattta tccattatct
      241 gttcaatgta attcttcttt catcttggtg actttaaaaa caaccaagga aaattactgt
      301 ccctcagtaa aggctttcga atttcatatg catttaatta gataactgcc agcccaagga
      361 caggaaccat gacaaatagt tgttctttta aaattagaag aatagactgt tcaatgagca
      421 atattgatgt tctcttgtac tgagttatac atctgctact gcttccttta atttatctaa
      481 ctgtttttaa gatttaatga ttttttaaca tggttttagt tacaaacgct tgttggtcat
      541 tttaaaaatg ttgctaacag caacagtacc tgtatagaaa aaatgcatac cccacaacaa
      601 tcttcttgga attagggatg aaagtacaat ttacttagaa aaagggcatc tggaattaag
      661 aggccatctt tatgtcagta gaaaaacaac aatt
//
LOCUS       KCOD01001543             717 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 172044pyr ultra-conserved element
            locus uce-5532, sequence.
ACCESSION   KCOD01001543
VERSION     KCOD01001543.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 717)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 717)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..717
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="172044pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>717
                     /note="ultra-conserved element locus uce-5532"
BASE COUNT          207 a          154 c          129 g          227 t
ORIGIN      
        1 acaaaggata atatatattt tctggattcc aatctactaa gatcataatg ttataaaggt
       61 tttgcaacta ttgcctaaga tacaatttta aattctaaac tgctcacatt tttacttcag
      121 aattcacctc attcattgaa atgttacctc agcatctatt aaggttttgc cttgagcaag
      181 gaattttgtt ttattttgtt tttatatttt gtctgcttct aaaatgaagc tatttaatcc
      241 cttgtcatca catggtcata aaaattgcag gcagacataa gttagcagtg gctgcttcac
      301 aggccccaca gcaatgcatg gtaacagatt ttcaaagcag ttcaaagagt ccagtttcca
      361 tctgtgtttg gtgaagggtg caaaaacctt ggggccatct gaaaactctg cttcatctct
      421 aacacttgga ataacaaagg tgttattttt caaagccaca gtctcccctc ctggggtggc
      481 tctgcagata cagttcaggg aaggtgggaa acttcagagt agatattctc cttctagact
      541 ttgcctcctt cagggagttc ttttgaggat ggcacaatgg tggcctatat aacatgggtt
      601 actgccagca gaggccaaca gttaatgaac cctatagaca aattctttct tctgatttca
      661 gtacaaaaat ctacaggaaa acagcctcgc cccctacaca cccttctctt caagccc
//
LOCUS       KCOD01001544             743 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 172153pyr ultra-conserved element
            locus uce-6382, sequence.
ACCESSION   KCOD01001544
VERSION     KCOD01001544.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 743)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 743)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..743
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="172153pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>743
                     /note="ultra-conserved element locus uce-6382"
BASE COUNT          252 a          171 c          112 g          208 t
ORIGIN      
        1 tgtaccattg cacacaagtt ttgtgagcag acacaaacat ggaagttcac acagtaatta
       61 aataaacaga aagcagagta tctgggaaga ttccaaacac cacgtcttat tacttaatca
      121 cccagcaaac acatttcaga ctattctttt tttttaactt catgctaaaa tgcaaatcac
      181 atactgtagt tttaatgaca caataaaaca gtttttggca taaagatcta ctaaatagat
      241 ttctccaaat tggcttgtcc gatacacccc ctgctcagtt ttagttcctt ctctacatag
      301 cagctctttt ggtaggacgc caaagcccgt caattaacag taagcctatc ccttatgaac
      361 agaagcaggg actgtgatca tgttcaacta agatcaagga ttagtaaatc agcatggcac
      421 cagattgcag gcactattta aaccccacaa gcctacaagc caaggcagca atattatatt
      481 ccatctggat gtggagaaca aaatctcata gttacagagg aactcacttt ttacctttcc
      541 tgtgcaggca attacaagtc aacttaaaat gagccctgat ttaatcacgt tggctctctc
      601 aaatgccagt taggaaataa ccccatgctg ccaccgctgg tatcttatca agcactttcc
      661 atcaaattac acatatttca ttacacctac tataaattat agaagactgg attttctaca
      721 agcaaaccaa atattgcacc aaa
//
LOCUS       KCOD01001545             667 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 172264pyr ultra-conserved element
            locus uce-737, sequence.
ACCESSION   KCOD01001545
VERSION     KCOD01001545.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 667)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 667)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="172264pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>667
                     /note="ultra-conserved element locus uce-737"
BASE COUNT          250 a          123 c           96 g          198 t
ORIGIN      
        1 tcctgctcca tctcacagag acatcctaaa actgcaaggc acacctacat atcatcactc
       61 agaacagccc agagtgaaac caggctctta aacaatacca agggggttcc tatgccatac
      121 aaaaatatat taaaaataca taatgtaact tgtcttaata tacttttctg agtctaaaaa
      181 tatgccagac caaaagaaac atatttacat aaaaagcaga caaggtcaaa taacaaagaa
      241 agcccttaat tagttgtaat caactttaat ttgcataccg tatataattc ctaaatgatt
      301 gttaataata actttatata atggacttcc aattttcatg aaaatggcac attttgataa
      361 gcagacacaa aaccctagta ctaataaggt ttaatttgca tacattagac tgattatcca
      421 aacaaaagga ttacagtatt acttctccat acctttatgt ccttattatg cacatttatt
      481 aacttcacaa aagctagctg ttagtgacaa acaatagccg tggctggaag agaaatctac
      541 agtatgaata aagtgcattt taatgctaag gagcaaagtt tatactgcat aaatgttttg
      601 tttaactctt tcttttggaa aaggcattat tgcttagtaa ggcagccacc gttagatgga
      661 tgaatca
//
LOCUS       KCOD01001546             503 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 172371pyr ultra-conserved element
            locus uce-1318, sequence.
ACCESSION   KCOD01001546
VERSION     KCOD01001546.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 503)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 503)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..503
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="172371pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>503
                     /note="ultra-conserved element locus uce-1318"
BASE COUNT          179 a           80 c           72 g          172 t
ORIGIN      
        1 ttatcacaac tacacagggg tacaatacgt ctcagtgtct tcaagcatat ttaatatctt
       61 taaattttta aatgaaaatg tagctgtcaa ttttaaacta atttggatgg acagcaataa
      121 aatgcaaacc tcacttcaaa ttagaatttt cagtgaggat ttctaatgga aagtaattgc
      181 tgacaatagg aaatgacaaa ttactaatta cttagttcaa ttagactttt gtgcctttgg
      241 tcctaagtgg caagcataca gcaaatcttg cacttttata acaattaatg acactaaaac
      301 tatttaaact gccaacagat gtgagtaaga agacatgaat tgaaacttac ttaatttaca
      361 tattatccca attttatacc gagtaaatgg tgtttaattt ttatgttaca attaaatatc
      421 actggcatag tgtgatttct gcagaacttc tcagaataaa atagtcttct agtgctaatg
      481 ctcttatcac agcactattt atc
//
LOCUS       KCOD01001547             749 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 172482pyr ultra-conserved element
            locus uce-7546, sequence.
ACCESSION   KCOD01001547
VERSION     KCOD01001547.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 749)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 749)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..749
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="172482pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>749
                     /note="ultra-conserved element locus uce-7546"
BASE COUNT          213 a          162 c          136 g          238 t
ORIGIN      
        1 atttgcaaat acccaaatct tctattgttt gaagggttta ttttgcgaca cagaacctat
       61 agttactgca cccctttttt atgattagct gaagcacaga caaatcatga aaagacaatt
      121 gtgcactttc ttgtgttcct ttatgggctt taagtgccta caaaaaagga ttccttatgc
      181 tttaatttct ctttattttt ttgactgtaa agacccatgg ggtaaatgcc agtcccacaa
      241 tcctgcagtt atatggttac tgtcagcctg ctcaaatgat gcttcctgtt cattaggcgt
      301 cctttcatct gacaacaatg tactggcttt gctgcaattc ttagtcaacg cccatctctt
      361 caatagcctg tgaatagtat taaatagtgt ttatgctagc tattgttgcc ttttgtgtgg
      421 tttgtctaat tcacagagaa aagtctgctt ttgtggtcta aggctggcta cgtcatggca
      481 cgccatgtgc cttctgatgg gatccattcc tgctgagtga taacattaca ggtctcaact
      541 cctttgcaat acaatccagc attcttaaca cagtcaatac actcacaggc aatctagttt
      601 actcttcata ttaagaggtt tagggagaca aagctcatct aaatacctgc tcgtgaaaca
      661 aataagatga attcaaccga tttgagaagc tcccacacaa ttacacaatg agcaccagaa
      721 atcaaaagaa gctgagcagg gaatgccca
//
LOCUS       KCOD01001548             419 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 172693pyr ultra-conserved element
            locus uce-2507, sequence.
ACCESSION   KCOD01001548
VERSION     KCOD01001548.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 419)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 419)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="172693pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>419
                     /note="ultra-conserved element locus uce-2507"
BASE COUNT          145 a           65 c           75 g          134 t
ORIGIN      
        1 gttgttacca catcttaatg attgtttatg ggattgttta agacagcaag aatctcgggt
       61 cttctctttt ttatgaaggt caaactaaat tcagaattat aactgaaaaa tgaaatgtaa
      121 ataccaagat ctttgataac aaagtaatta aaatgtatgg ttttgcctac tgtgtataat
      181 aagggcttat atttgatcaa ccataaaagt tatttaatca ttttaacctt ggaatactac
      241 cccacaaaaa actacttaat ggaagttagc tgagaagcat tagagtatca caacatcaag
      301 aaggctgagc gagagggcac tgaaaattca agcacagctt atttctgcca taatactata
      361 gcaggttgca tggcaaccag tggctgtgga ttttgaagtt actttatcct tattcaatg
//
LOCUS       KCOD01001549             443 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 172801pyr ultra-conserved element
            locus uce-6267, sequence.
ACCESSION   KCOD01001549
VERSION     KCOD01001549.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 443)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 443)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..443
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="172801pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>443
                     /note="ultra-conserved element locus uce-6267"
BASE COUNT          148 a           82 c           64 g          149 t
ORIGIN      
        1 aagattttgg agaaaagatt acaaggtagc aagcaagaag gagggtttat tttccacaaa
       61 aataaccatt accacattac ttgaaagtaa attattttga aacagatatt tctgaagttt
      121 taaaagcttg gaagaactat ctatcatcaa agtacacata gaccctctga gaatacaata
      181 ttcattttgc tgcagaagaa cagacattgc ataacaatga gatttgctaa tgaaatcagc
      241 catcaacctg gaatacattt gtattaaacc aagacctcag tgtcattttc tttttgcatc
      301 atttgttctt tctctcgttt ttcgaccttt caagtatcct gttggtttca ctgcttccaa
      361 taccgcaaaa tatttatgtc acaaaattct ctgcttactg ctaaatgtca attctaattg
      421 catagcttct atcagcattg tta
//
LOCUS       KCOD01001550             662 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 172908pyr ultra-conserved element
            locus uce-7658, sequence.
ACCESSION   KCOD01001550
VERSION     KCOD01001550.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 662)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 662)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..662
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="172908pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>662
                     /note="ultra-conserved element locus uce-7658"
BASE COUNT          188 a          145 c          135 g          194 t
ORIGIN      
        1 atgttcactc tggagcagtg aggccttgta cttaggctgt gctggctgga cacaagtgat
       61 acctgaacac cactgtctca tttataatac cttgtgtgtt gtgattgttt ttatcacacc
      121 atggtgtaca gcactcaata aaaacacatg cagaacatgc ctcactccac cctgctcctg
      181 gtttgagccg tcagtgtaga gaggaagaaa ctctgctctt ctcccatatg agcctacatc
      241 tgcttcctcc atcacagaaa ttgtccagag tcccagagaa atgttcacag gcatttgttg
      301 tatgcaaata gctgccaaat aaatcattgt atattggggg tttgtaccta tggaacttgc
      361 tactgtcact ccacttcccc atatacctta atcatgttat tcatttagca agaaggatga
      421 atgttactgc atgagacttt aatccctcac tgctaaggat ctgattctct agagaccagg
      481 aaatccaggg acttaaagta ggagtcaatt atttctcggc actgaattta ggcaaggttg
      541 cattacaaga cttcctaaaa tacttcagga gaaatttgtt ggatgagaac acattgattg
      601 tgcatgtgtg catgtcacac ctgtaaatac agggcctaga cttaaggcag agaatttgca
      661 ac
//
LOCUS       KCOD01001551             709 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 173016pyr ultra-conserved element
            locus uce-7358, sequence.
ACCESSION   KCOD01001551
VERSION     KCOD01001551.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 709)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 709)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="173016pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>709
                     /note="ultra-conserved element locus uce-7358"
BASE COUNT          193 a          156 c          166 g          194 t
ORIGIN      
        1 gagggtgcca ggattgccct gaacaaaatg ctttcctgct cttccagcac agacagctct
       61 tctctgcaac ttcccttgga actcaggaaa gagcaggaag tgatggctcc atagaaaagc
      121 caactcctgg ggtagggatc cacttgaggg aataagtccc caaaagggtt aatgcaacct
      181 ctctttttcc ccaatagctt catggtccta acaactttca ttgtgaaatg ggtgcaggtg
      241 tgggctatgc tttgttgatc acaatccctt ttgcagagga agctttgaat atgtttgaca
      301 taatcagctc acagcctttg cccgcactct ttcataaaca ggccattttc acatcctttt
      361 catgggatcc gacaagcgga aaaataatta atgttacctc agcctaacag tgacccagct
      421 ttgattcaaa aagacggcat gttgcataaa ctaaccattt aattgagtga tagaaaaagc
      481 ccacatgtat caattctgcc tccacgtatt atgattactg gggctttgca aggattgtgc
      541 tccctcggtc ataaagcaga gcttaaattc aagcccatga agtggtttca gaaggactgg
      601 ttgagcatga gctggggatt atctgtgttt atggtggcag gacatgggag caggggaaga
      661 tgtgggtacc caaccatcat ggtgcatgtt caggttatgt ccaggttat
//
LOCUS       KCOD01001552             332 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 173122pyr ultra-conserved element
            locus uce-5623, sequence.
ACCESSION   KCOD01001552
VERSION     KCOD01001552.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 332)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 332)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..332
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="173122pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>332
                     /note="ultra-conserved element locus uce-5623"
BASE COUNT          114 a           44 c           56 g          118 t
ORIGIN      
        1 gtcatactga taatgcattt taaatcctgg ggttatcaaa aaactggatt tttttttctc
       61 catattgttt gacagatgaa attaaacaaa ttctattgaa gtacaaagct aatagaaggt
      121 ttactatgtg tgtcattagc accatccata taaggaaaca gaaaatatga ggtgtggatt
      181 tttaaaatat gataaaatga gagcaccatt agatgcatat gaaggtgtga cttcaggcca
      241 ggcattttct tattagaatc aaagtgactc tatcttacat ttataaataa tcactgttat
      301 gtgattccag ttgatgtctt tcaaattatt tt
//
LOCUS       KCOD01001553             813 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 173230pyr ultra-conserved element
            locus uce-855, sequence.
ACCESSION   KCOD01001553
VERSION     KCOD01001553.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 813)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 813)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..813
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="173230pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>813
                     /note="ultra-conserved element locus uce-855"
BASE COUNT          241 a          179 c          151 g          242 t
ORIGIN      
        1 agttgcccgg gctccagggc tgcagcccct ccctgctggg agccagacgt gggagggaac
       61 cccagaggag caaggtgaga tgaagaaatg cagtatttcc aagagagagt ttgtcaccag
      121 ttagctaaaa ttgcttctga agttttgctg gcaactgttt tacatgtctg acttggtgac
      181 gaaggaactg tactatctta atagagaact ccagaacttc agaagggttt ctccttgttt
      241 gaatgcacag cacaatgaat ttgtacccac agagcattca ccacttacat ttcaaaacct
      301 acagcacact aaacgtgaaa cttttgttca aatttcaagg attttgatag cccaagtgaa
      361 tagacactgc ctattgattt ttcccttaca atgactcttg gataacctat tttctcattt
      421 atttttaacg acagctcatg agattttaca gcaattctgc ccaacctcct aatatcaaaa
      481 tccctccttg accctgaaaa ttgtaattct gctatagatc acagctgctg aatattacct
      541 tttactaagc tggttaaata aaatatgtcc aaatcactag atcccacagg ccatgactgc
      601 aattctaatt atacagggtc tgtatttctg ctctacagta cagaaaagca cagctttctc
      661 tgagtccaca ccaaagtgtg ggaatccaga atattggttc tagttttgaa tttgacactg
      721 ctcttcaatg attttcctgt aaaactttta caagggaacc aaaccctttt gatgtgttcc
      781 atacaataaa atgctgtgta agtctggagg aca
//
LOCUS       KCOD01001554             718 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 173339pyr ultra-conserved element
            locus uce-4644, sequence.
ACCESSION   KCOD01001554
VERSION     KCOD01001554.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 718)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="173339pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>718
                     /note="ultra-conserved element locus uce-4644"
BASE COUNT          204 a          151 c          145 g          218 t
ORIGIN      
        1 agagaagaca gcaattgcta tcacctattt actgtcaaat taattcagct gctcctgaga
       61 tgccatctgt atcaggagag cgagggtgtc accagcttta cgatccatca ggagaagtga
      121 gagcactgtt ctgtttgatg gctctgataa tggaaagaag ctaagcaatt gcaacagata
      181 catcatagat tttctcataa ttatctgacc tgttacactg tgtcactctg ccgccaaaca
      241 cactgttttt atgtcagaag ctgtatgggc attcttcact ttgatcattc tgtattctgc
      301 agatgtcagc attactgtat tttaattgac tctggggtag cattaaaaag caccttctat
      361 ttcagttgct tacacctgat gagagtgaca acctggcatt tatgaacatt aggccttcat
      421 ggtaactgtg tcaggaactg tgtttttcct aaatccccta ggtacaaata gcaaactgat
      481 gttagtaaac cagttcagtg tctatgcaaa ggacacctct gacattctct agccaaaaag
      541 atggcaaatt agattagact ctcacgtcaa aagtgcatgt tatatcccaa tgtgcaatta
      601 agaattgacc ggtgtgctga aagagggcta gagctggtga ggactgaagt tataatttct
      661 tgacaacttc catattccca gtatgccccg ttagccagga tcatgttttc ctcctcct
//
LOCUS       KCOD01001555             562 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 173450pyr ultra-conserved element
            locus uce-4764, sequence.
ACCESSION   KCOD01001555
VERSION     KCOD01001555.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 562)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 562)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..562
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="173450pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>562
                     /note="ultra-conserved element locus uce-4764"
BASE COUNT          181 a          120 c           98 g          163 t
ORIGIN      
        1 taatgcagtt tacaactctg cagtgttgct tagtattcta atgcatcagt cagatagcac
       61 ggctaatcca cgcctagctt ttccaattaa aacatttctg taatgccaaa caaaacagga
      121 cgtccatagc tacagcaagg ctgactgctg gagtcctatt tcctactatc ttttgcttct
      181 cagcagctcc ctcaggagaa gctcccatcg attggatgct ccgcagcaag atgaaatatc
      241 taataaggag gaaagagagt gggaggggaa cagagctaaa aggatgacat cacctgtata
      301 gaaagccttt agaaactgca ttagatcaat tggctactgg atctgcagat gcagccaaca
      361 gagcatcttt actgacctaa tataaacaca catatcagta caactgctca gcaaatttta
      421 tatcatttta ttagaactct gattactttc ctttttaatt aatcacatgt atctactaac
      481 acttgcagca gcatttagga ggattctttt tcatctctgc attcaaattt agaaataagt
      541 aaaataaata tctgcagcca tt
//
LOCUS       KCOD01001556             705 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 173563pyr ultra-conserved element
            locus uce-1723, sequence.
ACCESSION   KCOD01001556
VERSION     KCOD01001556.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 705)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 705)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..705
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="173563pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>705
                     /note="ultra-conserved element locus uce-1723"
BASE COUNT          229 a          130 c          128 g          218 t
ORIGIN      
        1 tatttcagat tgaaaaaaaa gacttgaaaa aactgaccct tacaactgaa caaactcagg
       61 ttttattttg agtgtcaagt gtccatacga gagcaatcag cacactgcaa aggttcagaa
      121 caaaagtata actgtctcaa cctatccatt tagaaagaaa gaagaaaagt gaaagcatca
      181 ctgacttcat gctttattct ctgacagtat ccatctttcc aaattgattt ttgatatccg
      241 tagtgacctg gaagggagac acagcgataa ctctcagaaa gtggaaaaca atattattcc
      301 cacaaatatg aattacttgc cggcaggtta aatctactgt gcaatgaatt atgtgaccct
      361 ggagctccta taattctttt gaattttata gagtcgtgag agggcctgtg agctttgaca
      421 agcacttaac agccaaaatc agtcctgaac aactctcttg gacatttgat ttagccgttg
      481 taggcagaac gttgccactc aattttgctt ttgaagcaaa agatgacatt cattcatttc
      541 tgaagttata gatttcattt gttgatttta ttgtaattct ttttcactgg catcttttct
      601 gttttgttat gccactcaac acaaataaat ataggagcag gttgtcaaga atagaggaca
      661 gctcaggctt tatccagaag aaactctcag tatgtcaaag tttgt
//
LOCUS       KCOD01001557             817 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 173674pyr ultra-conserved element
            locus uce-616, sequence.
ACCESSION   KCOD01001557
VERSION     KCOD01001557.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 817)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 817)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..817
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="173674pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>817
                     /note="ultra-conserved element locus uce-616"
BASE COUNT          241 a          154 c          176 g          246 t
ORIGIN      
        1 acaatgaggt tattaaagct taattacata agaaacagta tacatgttgt gcaagcttgt
       61 agaatgtcac ttgcagaagt taggcaagat ataagagttt cctaagtttc tattatatta
      121 tttccagcag tattctttga caaactaaat aaattactgc atgtattgga cctctgaggc
      181 ttggggcaaa gaatggaaaa attatttaca aaagcttgaa aatatttaat cactagaggc
      241 agggggcaac tgtgttttaa ttagtggttc ctcaggccat tggctggctg gaggctttct
      301 caaacaacca cacaaatgca ctgaatagct gtttgccagc cttagggtca ggcctgagat
      361 gaaacagata agataattgg ctctaatgaa atccagaagg ccttggcttt cttgtttgag
      421 cttggatttg aaaagtgcgt gtggaagtga ggcttaattc aaaccagtcc tgaactaggc
      481 ccgtttttca gtgactttga tattgtttga agttctgaaa gtgttcgcca caccactagc
      541 ctgctgggct gggcctcccc ggtcacctta attactgagc tttattgctg actttactac
      601 acaggaaagg agccattata tgttccatca acatcagctc tcctcagatt ggaggaaagg
      661 gcagggtgaa aggccactgt aggaaggcaa aaacttcact ttgaggtagt cagatcattt
      721 acccgtgtta aatttcactg tgctatgtgt gtacattcct cacaacacag aagcccaatt
      781 tccatttttt ttagcaagtg attacttttc aaaacat
//
LOCUS       KCOD01001558             586 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 173782pyr ultra-conserved element
            locus uce-3671, sequence.
ACCESSION   KCOD01001558
VERSION     KCOD01001558.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 586)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 586)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..586
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="173782pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>586
                     /note="ultra-conserved element locus uce-3671"
BASE COUNT          179 a          147 c          132 g          128 t
ORIGIN      
        1 tatagatata cctatctgac agttttcata atctattgta aattatctct gccagtcaat
       61 taggcaggca ggcaggaagt cccaccctgg cagagcatca gtgtaagact cttctttctt
      121 aattttccct cagacacacc atcctgagaa gccacttttt cctaccacag gaagcccaag
      181 agaacactat agctagcagt ctgacagcca aactgaaccc tggccttttg tatcctgcca
      241 ggtttgaaaa gctggacatc acccctaaaa gtgcccagaa gataaagccg gtgcttgagc
      301 ggtggatggc tgaggctgag gcccgccatc gagcagggat gcagaacctt accgagttta
      361 ttgggagcga accatccaaa aagcgcaaga ggcgtacctc attcacgcca caagcccttg
      421 aaatcttgaa tgcccacttt gagaagaaca cgcatccctc tgggcaagaa atgacagaga
      481 ttgcagagaa actgaactat gaccgggaag tagttagagt ttggttctgc aataagaggc
      541 aagcactgaa gaacacaatt aaacgtttga aacaacacga gcccgc
//
LOCUS       KCOD01001559             820 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 173892pyr ultra-conserved element
            locus uce-773, sequence.
ACCESSION   KCOD01001559
VERSION     KCOD01001559.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 820)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 820)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..820
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="173892pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>820
                     /note="ultra-conserved element locus uce-773"
BASE COUNT          283 a          146 c          170 g          221 t
ORIGIN      
        1 atatgttgct attaagtaaa ctttaatacg tacaatcaat ctgttgctgg aattagaaaa
       61 gagcaagccc acatcctgtg agctctaagc tggaaagtca gcacagaaag gaaacaacca
      121 ccacagcagt gataaaagtg atcttcttga gagaaatgga tggtattttt atttcgtttg
      181 ggctgattcc gtgctttgta tggcaaagtg aaaaggaaaa cagtagctgc agtaaaagga
      241 aatggccaac agtgactttt atttacaatt accaagagac aggctattat tgaccatatg
      301 tgccacaatc gccctcctta tcatgggttg gccatcatgt ccactgggag ctgttaatga
      361 actgggtaat tgagctgctg acatgtgtta ccaaaacaaa acaataggaa gaagagacaa
      421 atgaacattt tatttgccaa tcagagtagg ttccgctttt cagaggactg tgcctaagta
      481 agtggctgaa tacataaaac agtgcattga aggcaagcag atgcatgcac aataatggtt
      541 aactgacagc ctatggccca tctgtgctta acattttgtt aaagaaatta cttgacttgc
      601 taaagagaca aatcatacag ctgccccaag tgctgcatta taagagataa atcattagct
      661 aaaccgtttc atgcttaaaa tgacaatgca tattaacagt tatgcaggga cattttgtca
      721 gcacagcttg atgcagttat aagtgacaaa aaatgtgaca gctcatagct attcagtgat
      781 ttcaacttag aagagaatga caacactgtg aaaacaattt
//
LOCUS       KCOD01001560             659 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 174001pyr ultra-conserved element
            locus uce-5256, sequence.
ACCESSION   KCOD01001560
VERSION     KCOD01001560.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 659)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 659)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..659
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="174001pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>659
                     /note="ultra-conserved element locus uce-5256"
BASE COUNT          212 a          147 c          102 g          198 t
ORIGIN      
        1 aggttgtata caacagtttt aagtcagaaa taaaaatacg tagctcgagt tttcaaacta
       61 aaccagccag gctcagagct gatcgagcaa agccagactg gttttcaaca cgcagctttt
      121 agaaataatt agctaaaaac agataatgct tcagatcgta ccaaaaatta cctaaactta
      181 agttaatgct ccttggatca gaaacacttt ttaaaaagtg gatacctgcg gtccatctct
      241 ggcttcatag aagtcaccca ctcctatttt tgcactgaag ctgaaattgt cccttgagat
      301 atccattatt ccatttctgc tgagatactg aaaaaatcac atatttttcc acttcagctt
      361 gtaaataatt acaacccagc tttgatgtac agctaacttt gtgagtgtaa cgttttgcat
      421 attctgtcaa agggatacac catcaaatca gtaacaccaa gatacattac acctcacatc
      481 acagaaaata agtatctcta ttcgagagtt ttaactgcaa gcatgcttac cagcattaga
      541 atacgtacct ttactacttc aggatactgt ctcagcttct ttccacaagg tgcaaaatat
      601 gctacttctc cttgaagacg accaccaaag tttcttattc gggtttctct ttgccagct
//
LOCUS       KCOD01001561             396 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 174105pyr ultra-conserved element
            locus uce-5735, sequence.
ACCESSION   KCOD01001561
VERSION     KCOD01001561.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 396)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 396)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..396
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="174105pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>396
                     /note="ultra-conserved element locus uce-5735"
BASE COUNT          123 a           61 c           62 g          150 t
ORIGIN      
        1 ccagcaaagt ttcaaacacc tatgttttaa agtgtggaaa actttataaa gtactttgtt
       61 acggaaatct ccatcctttc aaacaaacaa gcaacaatct tggctctgac atctgtgcaa
      121 aactatttaa tattcttttc atgtggaagc tgttgtctga tcattagtca tgtttagttg
      181 cacctgcaat tattttttca tatatttaat atgccaattt tattgcagtg actgctctca
      241 ggaggtttat aatagtgatt aaagcaatgt taattgttgc attcaattca ggattgcttc
      301 aatgtcaacg tgatcaatgg tgatattggg aaatgtcaaa gtttccacaa gtttagaaag
      361 ctttaattag aatttctttt tttaaaactt taattt
//
LOCUS       KCOD01001562             550 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 174210pyr ultra-conserved element
            locus uce-3693, sequence.
ACCESSION   KCOD01001562
VERSION     KCOD01001562.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 550)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 550)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..550
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="174210pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>550
                     /note="ultra-conserved element locus uce-3693"
BASE COUNT          156 a          117 c          108 g          169 t
ORIGIN      
        1 ggcttgggaa gcatgatcat ctcaatgcca cagactcctt attcttttct tttctgtttt
       61 tttttccccc aagactatcg catttatgta atcgtcctct tattagggag attctgctga
      121 actgctgaca atgatgtaca gtggtgctgc gctggcatga cgtttgggga aaacgattct
      181 gctgcaccac cacacaaaac caattagaga actattttct gcgacaggtc aggaatttac
      241 attgtttctc atagaaagat gtgcttttta atttctttat taagatgaca tccatgtccc
      301 ttgcgacttt tagggatgac aatcatttgc tcatcacatg ggaaagtaca atcagcaaaa
      361 tcgcattacc agtacggggc aatgccagaa actccaagca tcgttccaca ttttccaaat
      421 gagctagttt gagacccaat aattagaaca atatatattg atagaatttt ttgacaggac
      481 ctttagacat ccaccggggg gtaaagtaat gatagtccac atacagctgg ctacgctatg
      541 tttgcagagc
//
LOCUS       KCOD01001563             689 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 174318pyr ultra-conserved element
            locus uce-6764, sequence.
ACCESSION   KCOD01001563
VERSION     KCOD01001563.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 689)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 689)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..689
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="174318pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>689
                     /note="ultra-conserved element locus uce-6764"
BASE COUNT          212 a          149 c          105 g          223 t
ORIGIN      
        1 aaatgtttac tgctacatat gttttaatta atttcatttc ccgaaagctt tcctttttct
       61 tacgtgagtg aagacattta agcaaataga gttggagtta gtgaaacatg ttccccaaac
      121 agtgtagaat aagaaaacgt aaactaaacc ctgcagattt cttacctctt tacaccatct
      181 gtgcagtatt gctcttaggc cttttacatt ggtcatcctg ggaacaaagc tgaaggcaga
      241 ttccagcagt ttttccattc actattcatt cagaggttca tcagctccat atggatccag
      301 ccaactgctg tgttaaatca gagccttttc ccagaattga catggtaatg aagtcatggt
      361 attgctcaca gaaaaggcct ccataggtat tttcctctct aacaaatcca gccttttcac
      421 cccattcact ccctaaaatt atctcataac attacaacat ctgtgaactg ggtttttgcc
      481 ttttaatgtc tagcatgttt tattacatga ctatgcatta catactggtt aacaggactc
      541 ctacacaacc aaggaaataa aataaacttg cactcttccc agctcagatt gtttcgtccc
      601 aatttatatc tgtagataga gctgtccaaa ctactgatat acaagataag tctttatttc
      661 tatcagaaag taatattcca gaatgaaaa
//
LOCUS       KCOD01001564             692 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 174428pyr ultra-conserved element
            locus uce-2865, sequence.
ACCESSION   KCOD01001564
VERSION     KCOD01001564.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 692)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 692)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..692
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="174428pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>692
                     /note="ultra-conserved element locus uce-2865"
BASE COUNT          161 a          176 c          189 g          166 t
ORIGIN      
        1 aagtcataat cttgacctgc caaaagcagg tcagaatctt ttgaaatcct ggtgtggcat
       61 caagttcttt agtagtcact gtgggagatt gctttctaag tcatcagcag tgtttgaagc
      121 ttcccaaccg accagttgag aaggatatca cctgtgacct gagtgcagac agcaagtttt
      181 attcactcca ggtggtgtag gaatgatgtg ctcgctgagc gaacaaggca agcagttggc
      241 agtccaagtg tcaaacatcc tggggatgga cgtgtgcggc attgacctgc tgatgaagga
      301 cgacggttca ttctacgtct gcgaggccaa tgcaaatgta ggtttcattg cctttgacaa
      361 ggcttgtaat ttagacgtag ctggtatcat agcggactat gccgcttccc tgctggcccc
      421 cggccgcttg acgcggcgca tgtccttgct ctccgtggtg tccacggcca gcgagactag
      481 cgagccagag ctgggccctc cagctggggc cgctgtcgac aacatgagtg ctagctccag
      541 ctctgtcgac agcgaccctg agaccacgga gagagagttg ctcaccaagc tcccgggggc
      601 tctcttcaac atgaaccagc tattagccaa tgagatcaag ctccttgtgg agtgatgcca
      661 cgtgtaaata ggtgaccaac agaactctct ct
//
LOCUS       KCOD01001565             506 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 174536pyr ultra-conserved element
            locus uce-3277, sequence.
ACCESSION   KCOD01001565
VERSION     KCOD01001565.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 506)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 506)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..506
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="174536pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>506
                     /note="ultra-conserved element locus uce-3277"
BASE COUNT          155 a          104 c           91 g          156 t
ORIGIN      
        1 ccctcctcca ccaattcctt tgattgcaaa tgtgttttcc tgacccccta ctccatacac
       61 gttagcacct aaccttgtct catctgtatt tacagtaatt atatgcataa tgtagcatat
      121 tattgtctgg atttcctgtt taatcagtat tcttacaagt gcagctgaaa agggcaaaca
      181 aaattaaagc tttatatacc aaaacaagtt tgattctcta agctcccagc attccaaagt
      241 acagagattt gttccaccaa gttttgcgat ggcttgcaga tgggcaatga ttaatcggag
      301 agctaactgt gaagtagttt gcaattaaac tggaaagctc tgaagcatgc taattgaatc
      361 agaaaattag agacactgaa cagtaattgg ctatttctca tgcagcaggt gccaggccac
      421 tcatctgtgg aacaaggtat ttaaggcaca ttagcactag gaaaaatatt tcttgatatg
      481 gaacagccag attttctgct catttt
//
LOCUS       KCOD01001566             469 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 174642pyr ultra-conserved element
            locus uce-2433, sequence.
ACCESSION   KCOD01001566
VERSION     KCOD01001566.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 469)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 469)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..469
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="174642pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>469
                     /note="ultra-conserved element locus uce-2433"
BASE COUNT          150 a           96 c          111 g          112 t
ORIGIN      
        1 atcctgatgc aaactttgac atttaccaaa agaaaaaaac aaacgaacaa aagaagcttc
       61 caagcaaatt ttgattggct tcattcagac aagaaacacc gtaatggagt tacagagtct
      121 gagaacagtg cagaagaaaa atcaactgtg tgttgctaga atctagtaaa tgcatgtgaa
      181 attctaccat agagtttgtt ttcaatccat gtggaaggga gggttcgagg gaggggagca
      241 ttattacagt ccacgagagg tgtctcctct tctgagagcc catcatcgta cagtaaggaa
      301 tcggaaggtg tggaagctgc aaggtctaag tagtcctgag aaaggaatgc acaaaaagct
      361 gcgttaatgc acgaacgtgc acctctttac aacaaggagc tacccactgc atttatcttt
      421 ctcctctggc ccctgaggag gctgtgcttt ccacagcagc tctggaagc
//
LOCUS       KCOD01001567             555 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 174746pyr ultra-conserved element
            locus uce-5934, sequence.
ACCESSION   KCOD01001567
VERSION     KCOD01001567.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 555)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 555)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..555
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="174746pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>555
                     /note="ultra-conserved element locus uce-5934"
BASE COUNT          163 a          102 c          102 g          188 t
ORIGIN      
        1 tttaattcca ctgttgattt ttctaaccat gattgaaatg tcctcatttg ctttagttct
       61 atatgtgtgt atgcagcagg acttttcctc cgtataagaa attatgcatc agacaaaagc
      121 ctcataaact gaccatttgt cctttggaca caatagcctg cccagcccct ctgctcctcc
      181 tctccaatta tgtgtgatta gtctcagtgt gttgtgtcaa gaagggggag tgtgctgagt
      241 gcttattatc tgtttaggta caagaagagc acatttaggt tctgactatg aatggaaagg
      301 gagcctttat caggactaaa atctaaatgc tactatgcta gaaattgcgt taattctgag
      361 aaactaagaa ccaaaggatt ttataatgta atcaaactat ctcccttgaa ttagtttata
      421 ttgtgatatt ttgtggccca cttatttgat atacacttaa tgtgtttttc ttgtactggg
      481 aaagacaaaa tcctacagag aaacatgagg agtatcctta acagtctaac agaccatttt
      541 aatgacttct cagta
//
LOCUS       KCOD01001568             756 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 174857pyr ultra-conserved element
            locus uce-3676, sequence.
ACCESSION   KCOD01001568
VERSION     KCOD01001568.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 756)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 756)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..756
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="174857pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>756
                     /note="ultra-conserved element locus uce-3676"
BASE COUNT          226 a          135 c          157 g          238 t
ORIGIN      
        1 tttttccaaa ggtaagaaga aaatgtccat gaggatggta tcagtgatca gcatagtgtc
       61 cacaagagat ctggggataa ggaatgtgtt tcattttata gccctgtttc cttatgcaag
      121 taagtgactg tgtgatctag caacctgagt tgaatagcca gtcctttagg tctttcacag
      181 gctatgaata ccgtaagagc actcaaccct tctgaagata tgcaaatgta ggcatttaaa
      241 agatttacat tcatctttca caggcctcag aaatataaat atgaaatatc cagaaccttg
      301 tcacttcagt aataattaag ctgatggcct attatgttcg attgcaaatc aatatagtat
      361 cttttggtgc cacttgagtt cttgagggtt ggcttggggc cagcactagt tatacaattg
      421 aagagctgca gctgcatcga aaacttctct gccatttcca ttcagaaaga atagactggt
      481 aacaatggtg gccagcctct tcatagtaat tgtgtgcaag tacacatttt gaaatagtgt
      541 ttttgttcag caggtgctgt tattttagtt taatttgaat tttgaaatat ggaggagaga
      601 aggggcctaa tcttaacagc atctaaccta cagctgttca gaacaggaca gcaaacagca
      661 tatgttgctt agatgaaaat cataattgct tattcttcct ggcatattag cagaccagtg
      721 ctgagcctct gaaattatct agcattttca ggcttt
//
LOCUS       KCOD01001569             543 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 174966pyr ultra-conserved element
            locus uce-5275, sequence.
ACCESSION   KCOD01001569
VERSION     KCOD01001569.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 543)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 543)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..543
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="174966pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>543
                     /note="ultra-conserved element locus uce-5275"
BASE COUNT          167 a          103 c           90 g          183 t
ORIGIN      
        1 aaatcaaaga gttcagagtt ataaaagcaa aattcaactc cgtaattcac ttgcttaatg
       61 aatgtctttg aatatactga agatctgaag cctgaactaa tcaatttctt cgctgtgccc
      121 tagccggtca gccatgctct ttaatttaat gaaacaagag ttttagatga aatagcacat
      181 acacatcaag aaagaattgt attgttgcac tttgaaatgt gtccaactgt gcaacttcat
      241 ctaatgataa tttttttaag aggccatcga tttctgaaag acttattgta ctagcatctt
      301 gatgaaaaag tgaatgtcag catatctaca gaatacttac accctgccat taatgcttta
      361 tttggcagac aatgactact caattgaggg tcctctgagc tgtgcaatca tttagctttt
      421 cttctcttat gaggtcctta gtgtcttgtt ccagttcaat actcttttta ttcaccatta
      481 tagtggccat aagtgtgaat tttatgggaa cttgcaaacc catagtcata actagagctt
      541 tcc
//
LOCUS       KCOD01001570             831 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 175077pyr ultra-conserved element
            locus uce-999, sequence.
ACCESSION   KCOD01001570
VERSION     KCOD01001570.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 831)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 831)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..831
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="175077pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>831
                     /note="ultra-conserved element locus uce-999"
BASE COUNT          263 a          172 c          181 g          215 t
ORIGIN      
        1 taacatgcaa gtgtgcaaaa atcctgtgca ttttaaattt ctttcacgca gtttcatcag
       61 tctattagag caaagataga atttctaaat tgtcaaaaag atgccagttt cgggcgtcct
      121 taggataagc caatctattc aattcggaca aaacccacca gtacataata gtctttaaaa
      181 gctcataaac caccatacca cccaagatgt taacaagctg gcatgttttg agcagcaaag
      241 atagagagga aactgtgttt acatgtttgg cacaaaaact aatgaggaaa gtcaattggc
      301 cctttgtctt gagggtctga agagctgcgc tctaatgttt ggtttcttgg ttggcacttg
      361 ttcaagtaat cactcgtggc ctgacaaagc agcacttgtg ttttattagt ggccatgctg
      421 aactctcctg cctgggctat gttgtctctc aatagagcac tgcaccagag ggcacactta
      481 tttgaaaaca ctaaatcaga gcatgatgat ctttgcccga caaatacaac caagagagga
      541 ggctctcctt ttgttagaga aagtgaggaa acaacaactg gcatgtgcat gcatgtaaga
      601 acagtcctga aataccaatg acaaaatgag caaaactttg ttcccacaat gagatgctca
      661 gagccaactg gatttgctcc atgcttggga acaggacatt ggcaaagcta aaattcatgt
      721 tgctcacaac tgggagagca gacatagcat tgttaatgtc tcgggtcagt ctggcaccgg
      781 cgacaaagct acaggctcag gaagaaggtg caaagaattt aaaagccact g
//
LOCUS       KCOD01001571             693 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 175186pyr ultra-conserved element
            locus uce-1800, sequence.
ACCESSION   KCOD01001571
VERSION     KCOD01001571.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 693)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 693)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..693
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="175186pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>693
                     /note="ultra-conserved element locus uce-1800"
BASE COUNT          192 a          134 c          167 g          200 t
ORIGIN      
        1 aaatgagatg gttacttgtg gcccaggagc gcctccggag cgggggagcc tggccgggga
       61 gtaattcccg ggaattgtga gcggacagtg ggtccgcggg gagcgctggc aatcatggcg
      121 gaaacaatgt ttgcatcgat cagctgtcac ggtgatttat ggcttcattt tgctgtaatg
      181 gagaattagt ggaaagatta tcagggactc aacactttgg cttgttaccc atgtccagac
      241 gagcaatttg tctccctgaa gcagtgaaat acttgtgaca gctccaacac taattcaatc
      301 aagagaaaat gttggaatta atttgttaca agaaaattta aatatgttca gcaaacagta
      361 accgcagagc agcagctgat ttattgtgct cggcaagata tcgatccgct tcgatctggc
      421 ccatgttgag gttttaatgt gtaataattt ccaatttaaa gctccttttc aagatcacgg
      481 gtttaaagag agggcaggct gggtctcaag acctgattag gagcctgttg caatggcttt
      541 gtcaaaagcc tgtttgaatg taaattcata gttatctttt gcactatctt taatattctt
      601 gacatggatt ttattgtgtg tcaaacctca ggccagctgc ctgccacaac cattaatgaa
      661 acatcttagg aaataaatct cagtctttat aca
//
LOCUS       KCOD01001572             790 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 175293pyr ultra-conserved element
            locus uce-8040, sequence.
ACCESSION   KCOD01001572
VERSION     KCOD01001572.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 790)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 790)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..790
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="175293pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>790
                     /note="ultra-conserved element locus uce-8040"
BASE COUNT          157 a          240 c          163 g          230 t
ORIGIN      
        1 tatggggctg aggcagcgag cctccctctg taactctacg aggaccacgt ccttcctctc
       61 ctgccacctc tcctcttgca tctctcactg atctggtgcc cttctctgtc cctctctccc
      121 tccttccttc cctccttccc tatcttctcc tgccttttct ctgccccctc tgtctcctct
      181 ctcttttctt ctttcccgtt gcttagctgt gcctctcctt tccccacttc gctctccccc
      241 tctctctccc tggctgcgct gggttactaa tgtgcagtaa tggtatggct ggaaagtcat
      301 ttgcactccc cttctcttta tttttttcct gcagtattat taaaactgtt ccatcactgg
      361 ctgtaatggg agcgtctgta ttttctccct ctcccgtatc cctgacatga cataatgcct
      421 gccctcacca agacgctata acaccgaggt aattgaaaca taactcaccg taaattacag
      481 gccgttgttc caggcaggga cccggccatg cttcctggag ctcattccaa ctggaagcta
      541 aacattactt gaaaagggat gcttaagcaa aacaaagcca tttaaagagc aacacaaaca
      601 cggagcacag ggcttgggct ctcctggaga ggtggggtcc cacctgtgtg gcaactggtg
      661 ggactgagca gatagcaggg atttgggtga cttctcgtgg tctgtgtgtt ccaaaccatg
      721 tccttgtaga cacaagtgtt gggatcaaat aagcatctct gtcagcagag agagagcagg
      781 ccacgtaaat
//
LOCUS       KCOD01001573             817 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 175402pyr ultra-conserved element
            locus uce-1277, sequence.
ACCESSION   KCOD01001573
VERSION     KCOD01001573.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 817)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 817)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..817
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="175402pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>817
                     /note="ultra-conserved element locus uce-1277"
BASE COUNT          276 a          160 c          155 g          226 t
ORIGIN      
        1 gattgtcaca acagaggcca gcatttgagt ggaagaactc tatcacagga agttggttaa
       61 aataacttcc ctgcaatttc agttgaaagt gttaaccgct gaagacctta cagtacctct
      121 ctccaaactg taagaattgc cacttccatg gtacccatgt ccccacatta aaaaaaacga
      181 accattgctc ttttcttttt gcttcacagg cacaaggaag caggaaacat tgtgctaaca
      241 tgactatagt attgatgaat aaaaactata acccccaggc taagctgcca aataagtagt
      301 gaattaattt ctgtaaagta ctccaatatt acaaaggtgt gttgaaaggt gtctgctcat
      361 gtttcaaatt aaacgcactg ctggtcagca ttagcacctc agctttgaac agcagccatt
      421 tgcctataac acttcagggg ctgggaaaaa cggatttgcc gttcacactg gaataattag
      481 aacatgtcag gaagaattaa tttcctcatt tttcaaaagg atacacagaa attaccatgt
      541 tattatatga cagggtccct tggagaattg tattaaattt aatttctagc gcagcccaca
      601 caacaaatta aagtcataaa taagatggaa agaagcggga cgcagagcat atgtttatgg
      661 caatgagtga agccaaggga ccagaaacaa ctatcttcat ttcattttat ttaaatcagc
      721 cagacactgt gtatctgaat gacagcactt gttaatggtg ctgagattat aggctcctta
      781 attttaggaa acagaagcag tcactcagta tttgaaa
//
LOCUS       KCOD01001574             586 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 175514pyr ultra-conserved element
            locus uce-2455, sequence.
ACCESSION   KCOD01001574
VERSION     KCOD01001574.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 586)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 586)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..586
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="175514pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>586
                     /note="ultra-conserved element locus uce-2455"
BASE COUNT          163 a          107 c          139 g          177 t
ORIGIN      
        1 acgggatggg aagagcaaga cacggccctt tgtgttaatc ccacggttct gtgcgtgcaa
       61 gcaccatcct gtcacctctc tcagagcatt gacaaaggca aggagcacaa attccagagc
      121 agagctggag gctctctttg gaggggaggg gagtacacat ggcttcggag gttgggtgta
      181 tctataattt ctgctatcct gcaagagtca ctagaatatt gtactttccg ctacttcagg
      241 atgttctaat gaaccaatgt ggcaagacta ctggacttaa tttaatggta ctatatatta
      301 atactcctta ttatatcaca cttgcactaa agatggggag tgagcagccc tcttttgagt
      361 gcattgagtt atgaataaag gtggtggaag ggtataattg tattatcaca tgtattccga
      421 atgttaagaa tccaagctac gttgaaatca gcaatccagg gttggtaatg ttggaggaca
      481 cattcatttt taccttgtgg atgcatagtg ctgtaggggt cactgttgta tacagtctgt
      541 tttctatttg ttaataaaaa aatctacagc atcattgcat aattct
//
LOCUS       KCOD01001575             355 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 175620pyr ultra-conserved element
            locus uce-5803, sequence.
ACCESSION   KCOD01001575
VERSION     KCOD01001575.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 355)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 355)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..355
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="175620pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>355
                     /note="ultra-conserved element locus uce-5803"
BASE COUNT          105 a           73 c           68 g          109 t
ORIGIN      
        1 aagcaaatca gcattttgcc tacggggcac acattttcga cctgtactat tttatatcag
       61 tcttttgcac gccttggctc tgtgttcagg agatgagaat ccatgggaaa acatccatgt
      121 gaatgcaacc attagaagca ttgggaaaca ccaaggtaaa cgtttttttc cctttgaagc
      181 ccccatgcct aactctacga tactattgac tcaagaagta atgctgaaca ctggaagtgt
      241 tcagtcagca ttttaaacta ttatgagcta ccttctgaac cattgccaag ttaatagaca
      301 atgaaagata atgagcttga aattgggtgt taaattgcat ttttggttct ctcct
//
LOCUS       KCOD01001576             299 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 175723pyr ultra-conserved element
            locus uce-6021, sequence.
ACCESSION   KCOD01001576
VERSION     KCOD01001576.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 299)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 299)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..299
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="175723pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>299
                     /note="ultra-conserved element locus uce-6021"
BASE COUNT          102 a           58 c           49 g           90 t
ORIGIN      
        1 atacagttaa atacctaaac cgtaacataa ccgtaccatt agctttatct gcagacacaa
       61 gggatgtagg taaagaattc atttaatttg atagtgtata aagtacttaa ggtacttgat
      121 gatttattga tcaagtagaa atcagggcat ccaacagcta ctatccctat tcacacgatt
      181 aaatatgaca ttaacttttt gtcaatttgc gcaacaagcc ttacgctatg aagaacagaa
      241 gcgagcagct cttcaggtat aaatcttccc cttttgctaa tatgaattac tgcgagtcc
//
LOCUS       KCOD01001577             617 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 175826pyr ultra-conserved element
            locus uce-7376, sequence.
ACCESSION   KCOD01001577
VERSION     KCOD01001577.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 617)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 617)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="175826pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>617
                     /note="ultra-conserved element locus uce-7376"
BASE COUNT          175 a          122 c          133 g          187 t
ORIGIN      
        1 tccacaagga tctggagcac atggttttgt gagtaaaaga atgcagaaat tatttattac
       61 actagatgca tgcagaggga caccagcggt gtggactgtc ttatggccag tgttttgtac
      121 ctttgggact gcatctgtgg gcagataggc aaagacgctt cacacacggt ggtaaaggag
      181 gtgtgtttat ctctgcagtc tcagtttgat aaaaggctgc attgctcata cctcattgcc
      241 tccttgtatt tctgaatgag tttctgcttc tcttccttct cctccaccca gtactcactt
      301 ggaatgacaa agttagatgt gatccggcat tctgggcagg acctgggaaa tgaactgtgc
      361 tgcaaaattc cacattacag ggcgcctata taacaagtca tggcaaataa agaggtacat
      421 atacacacat gaagataacc taaactgttc ttcaatggca atggcagctg gtcagcttgg
      481 ctcagaaaag aaacacttca cacagactcc tttttcttta gaattaaata aatttatttt
      541 ggtattccta tatttatttg attggaactt tgtattttct agaacagcca aatggagaaa
      601 tgttttgcca actgagt
//
LOCUS       KCOD01001578             790 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 175938pyr ultra-conserved element
            locus uce-186, sequence.
ACCESSION   KCOD01001578
VERSION     KCOD01001578.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 790)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 790)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..790
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="175938pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>790
                     /note="ultra-conserved element locus uce-186"
BASE COUNT          232 a          181 c          140 g          237 t
ORIGIN      
        1 gctgctctga agccagtgaa gttacttcag ggctgaatgt gacccatttt atgcttttca
       61 agaacctaac taacaataaa tgtcacctcc ccgtcacagc tctaatgctg ttcagaggac
      121 agatgtacaa tacatctttg tcttcttcct gctcgtaacg agcagtgtag gtcatctgca
      181 tcattaacat ttgcagctga tgcatttgtg tagtctgtat acacttcttg gaactgcaca
      241 gaccttctca ttgttttcag aaccttgatt ttttgtagta ttatcatcat ccaaatgtat
      301 ttaaggatga aactattaga aacacaattg gtgaattaat gtcatgagga ctgctgctgg
      361 cagctcatca atttttgata tgccactcag acaaatgaaa cataagccac ccagaacaag
      421 gggacctttt gacacttcaa aggaaacccc tatgggtggt ttcctcttga agctgcacta
      481 aactggctca atctcctcag ctggaagctg ccaatgtctc attaacccct aaacaggccc
      541 tgcatgagct tttcttttca gctataatta tgccatgcac tcctgttatg ctgtactgaa
      601 ttgcaacact gtcaccagca cattataaac atccacccta attgaaaagc agattagact
      661 cgtgttaatt agtgaaaaag cccgcccact tgcatgcatt atgattgcct cttaaatact
      721 gaggatgttg aaatccctca gaaagacaag gcagacttaa ttgcaataac ctgcaaatta
      781 agtttaattt
//
LOCUS       KCOD01001579             732 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 176046pyr ultra-conserved element
            locus uce-7906, sequence.
ACCESSION   KCOD01001579
VERSION     KCOD01001579.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 732)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 732)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..732
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="176046pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>732
                     /note="ultra-conserved element locus uce-7906"
BASE COUNT          218 a          127 c          147 g          240 t
ORIGIN      
        1 tatacaatgt gaaaattgct taaagcatat atttatagaa atgtctttat gtactcatcg
       61 tttccacaca cattcatatt catacataca cattatttgt atgtttgcat ttgtgcacat
      121 atattataga acatacaact tgaaggggaa ggtggctgac cagatttaat ttgtctgctt
      181 gtatttagca cttaagggct tatatactca gtttgctcaa aagagtgaag aagtactcct
      241 tgcttacgcc tcaaatcaga aatgcatgaa gtgcagctgc agagataata cattctcccc
      301 aaaggctttg gctgagcaaa ttaggtgtca atggggtgcc tgcgcaggca gtactctctc
      361 taattagtct cttgagccta gttggtggca ggtataagat gatctaatca attggtctgt
      421 gtctgatggt acgtgtaaaa atcctagcag gcagagctgt ctcccacagg tcactcacct
      481 gcacagcagg aacgctcatt ttcatttttc atctcttcca tcacatgatg ctgacagttg
      541 gttttaagga aattgaatcc tatctagttc atagggcatg taggtcaaaa taaagttgca
      601 ttatgggtat tggtgatcca attaattaat atttatagca acaagtagca tgtagatatt
      661 atctgagtgc aaatagtatt gctaatgttt ggttggcttt ttaaaatgat ttctctaaca
      721 aaggtaggaa ta
//
LOCUS       KCOD01001580             762 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 176157pyr ultra-conserved element
            locus uce-938, sequence.
ACCESSION   KCOD01001580
VERSION     KCOD01001580.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 762)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 762)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..762
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="176157pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>762
                     /note="ultra-conserved element locus uce-938"
BASE COUNT          241 a          127 c          163 g          231 t
ORIGIN      
        1 actaatgaag gaaaccacat agacattata cacagacaga ggaagtgggg tagaagcccc
       61 acaagcaact ctttctgaag ccagttcaat atctgtgtgt ttaagctatg aattagttca
      121 tttatattta cttttatgaa gctgattaac cagagcttct ctatctgatg aaaatcattt
      181 taattgtagt gttaggctcc tgtgtaatat ccattacatt atgaactgtt taaattctac
      241 atgggtattg tgtaaattgg ccctttgtga gctgagaagc aattacgacc aaacagctct
      301 cttttaaatg gctacagaac tttgtggtgt tgttcaggac aatcagaaac aaaggaggct
      361 gtttaattgt aatttaatgg aatatcaagg agtccatggc attagatgct ggcaacagag
      421 agcaggagag aaaaattaac tgcaattatg tttgattaaa gctatccttc tcaataatca
      481 gccatcctga caggccatgg ggctctagtg ggtttcagga tggcaaaagg tgttgagcaa
      541 tattagggcc aataaaggag atattagcat agctaattac agcactgcaa aacctgtaaa
      601 agggacctct gtgtattgta atgtgtgaaa taattggccg aggccattat caattacata
      661 aggaatgaat ttggtttgtc agagaaaagc tgatgagatg catttcattt gacactgctc
      721 ctttccctca cgtttgcgtg taactaagga cttatcagct tt
//
LOCUS       KCOD01001581             409 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 176266pyr ultra-conserved element
            locus uce-3442, sequence.
ACCESSION   KCOD01001581
VERSION     KCOD01001581.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 409)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 409)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..409
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="176266pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>409
                     /note="ultra-conserved element locus uce-3442"
BASE COUNT          108 a           94 c           94 g          113 t
ORIGIN      
        1 catcccggtg attagctggg tcggtactaa agaacattag gaattttctg ctgctctgat
       61 tggtaattaa gtgactcgtc tactggccga cagtcctgta tgcttcccca ggcagttgtt
      121 agttcttcga aaaccactcc tgacaaaatg aggtttgccc ttggtacaca gataatgaga
      181 ctcagcttga caggtgtggc gcgattagag cgcggctccg cgcggctctc ccgctacagc
      241 cactcgtggt aaacacactc attacaaccc gccggtcccc ggaggcaaag catgtttgac
      301 attattaatt ggcttttctg tataaggagt caaatagatg aaaaggttta tcaagctgaa
      361 ataattaatt ttgcctgaat tcgctgacag ttcagaaaag accatttta
//
LOCUS       KCOD01001582             764 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 176372pyr ultra-conserved element
            locus uce-1775, sequence.
ACCESSION   KCOD01001582
VERSION     KCOD01001582.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 764)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 764)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..764
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="176372pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>764
                     /note="ultra-conserved element locus uce-1775"
BASE COUNT          266 a          113 c          136 g          249 t
ORIGIN      
        1 ctttcttcag atgtcattcc tctgtatgca ctcatttctc caaggcttaa gatctaaaat
       61 tcctgtaaca acttggcctg gaaagatgaa tagcttttaa aacattgtgt tgattgtatt
      121 aattgggaag ggagtaatgg gtttagagta actggaacgg tttttaaaca gcttgattac
      181 aaggattatc acatacacat tgagatagac aaatctaggg aaatgagaat aatttctggc
      241 tttcctgagc atgcatttaa agtagagaaa tgtagaacta aaagcaaata gcacaacctg
      301 ttttaatcaa agtagtctag caagaaacaa tcaattaaag aacagtctga ttctctgtga
      361 catcaatgta tgaaaatctg ttagacgcca gattgtgtct caagacacat atgatgaact
      421 gaacaaaatg acctgctaat agcttttacg ggtaataaat gcatcatgtt attggtaatt
      481 ctgcagatgg taaatcaagc taatatccag gctgaaacaa gctacttgtt aaatatactt
      541 caaaaatgtt cctccttgtt attccataat tgtgtcacac agaaaaataa gaagattgct
      601 acttactttt aagcatttta aattaagatg tgtttcaaca tgcagacatt ttaattttca
      661 aattctttag agaagtgatc tgagcttttg aagcacagca tttgtattta gattagcaga
      721 aattgtttta tagaaatgtt ctgttcatga tgtaaaagag attt
//
LOCUS       KCOD01001583             637 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 176482pyr ultra-conserved element
            locus uce-956, sequence.
ACCESSION   KCOD01001583
VERSION     KCOD01001583.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 637)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 637)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..637
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="176482pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>637
                     /note="ultra-conserved element locus uce-956"
BASE COUNT          174 a          112 c          132 g          219 t
ORIGIN      
        1 aacacccttt ctgtgtttgc agtcatatgt aatttttatc tcttgacctt taaacgtaag
       61 cagcagtaaa atgaagaact atggcagtca tttaacaccc tgcctgtact aactggtttc
      121 tgcctgtgag ccgtggtttt aaattggcta atgcagaata cttgcagagc taataataat
      181 tcagattact tctgtcagct attccggttt catgggtaat ttagtagttg aataaatttt
      241 taaaaaaatt cattcgttcc catgcactgt tatgaatcag tagatggttt accattggca
      301 gcagtaactg taagaagatt taaattgcta ctgaaaagga tttgagtgaa ggtaatgttt
      361 tataatgttc taagccatat gcactacttt caggcctcat cagttttaca ttgattccta
      421 gtgaagtgtt taattgcatc atgaatgcaa tataattcag ttctttttgc taatatggta
      481 tatatctcaa agtgatatac agcactgaca gtgaagactc agggttttct taggattttc
      541 aaagatgcct ctgtgtgtgc cgcgtgtgtg cacatctgtt gcttggtgcc gagagctgcc
      601 ggctctccag gggtgtctgt gtggccatca gcagata
//
LOCUS       KCOD01001584             688 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 176589pyr ultra-conserved element
            locus uce-4713, sequence.
ACCESSION   KCOD01001584
VERSION     KCOD01001584.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 688)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="176589pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>688
                     /note="ultra-conserved element locus uce-4713"
BASE COUNT          226 a          150 c           83 g          229 t
ORIGIN      
        1 ttttaagaat atcaacatac acacatcaat tacaaataca gttactaata ttgctacatt
       61 taaggtatat gcatgtaagg tgcccaattt tactattaac aagcagctct cctatataca
      121 tatacatttt tagaaagaga attcagtcta tttaacaatt cactaacaaa gctattcctt
      181 agctcatccc tgccataacc tgctctattc agaaacatat gggaaaagac attaaataac
      241 cagtgaaaac catggacttc tggtattagt gctacacatt gcatacccct attcattatt
      301 ccacctccct tgtttaatct atcattaaga ctcagtgacc ctacactaaa tttaaagcag
      361 atccttcctt cctcccatgc ctaaattcac atacttttct agttggggat gccctcaagt
      421 attagccact ctacagggtt tctctaatct cagctctgaa ctatgttgtg ctatagaagc
      481 aagaaattgc tggtttacat ctttaactat ggaatcttcc acccccctcc tttacttaat
      541 aagataaaaa tctttcatgt agaagatatt taacatgttt aaaaaatttt cctttatatg
      601 atatagaata aaagttataa agctttaaag cactgcttcc ctgaacttgt ttcccacaga
      661 gttccattgc aagcaatttt aaagcttt
//
LOCUS       KCOD01001585             591 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 176701pyr ultra-conserved element
            locus uce-968, sequence.
ACCESSION   KCOD01001585
VERSION     KCOD01001585.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 591)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 591)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..591
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="176701pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>591
                     /note="ultra-conserved element locus uce-968"
BASE COUNT          183 a          100 c          145 g          163 t
ORIGIN      
        1 ctgtgcaggt tttacagtgg aagacgcaaa gctgtaagtg ggtagttgtt cttgtgaaga
       61 aacttcctcc tacagtggag ccatttatca cagccctaaa tgaaagcatt ccttggacac
      121 aaatgtcttt ttcttccttt gtctgattac tgaggggaaa agtgagaagg aaatgtcaaa
      181 acagtgaaac agtggtgtct agagagcagt cactttggag ctcaaccagc ttttgtgaag
      241 gcctggatga tttgtcaaat ggttgtggca taagtcaagc tctgaggttg aaaggtcttg
      301 acctaaggag tgttgaaatc aggcagtata agcaagaggg ctgctagaag tttcagctgt
      361 agtggagatg aacaatgatg ggtgctggac aaaacaaaac ctaatttgca taattcaggt
      421 aaggaatttt attgaatctg acaagtatgt gacaggctga gaaagagaaa agaacatgct
      481 cttgctggga accttcaaag ctcttgttaa ggtatgtgga aataaatgac agctaatctc
      541 ttcactactg taaacaatac cattttacac agggctcacc catgaccttt t
//
LOCUS       KCOD01001586             573 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 176812pyr ultra-conserved element
            locus uce-5300, sequence.
ACCESSION   KCOD01001586
VERSION     KCOD01001586.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 573)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 573)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..573
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="176812pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>573
                     /note="ultra-conserved element locus uce-5300"
BASE COUNT          143 a          116 c          158 g          156 t
ORIGIN      
        1 ctcgtgtttt catacttact tctttcagca ctggagtggc agtgttcctg cagattcagt
       61 ttgtgaatct taaagcccaa aagctgcttg tgacaagagg agggagttag tgctcactga
      121 tatgttcagt tcttgctgtg tctgtggctg aaccgtttga tgggtcttcc gttaaaaggc
      181 agatcgggag cggcgcagag aaatttcctt actagatgac atttcatcgc aatgtccgat
      241 cgtttggggc aaataaccaa gggaaaggat gggaaaagca agtactcgac tctcagcctg
      301 tttgataagt ataaaggaaa gtcaatagaa gctatcagaa ctacaggtaa gaaacacctc
      361 cagaaagctt ttgatggcag aactcattca ggttgttggg gacaccgctg ggttgtgcag
      421 gtgtcttcat taagaccaaa atgtccacga ctctttgtgc tgctcttact gtggagacat
      481 agaggacagg acagctgggg gctcttggcc cttcgttttc cttgctgcag agtggacagg
      541 tagcaggctt cagggcctta agctgtgccg ggg
//
LOCUS       KCOD01001587             485 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 176996pyr ultra-conserved element
            locus uce-5829, sequence.
ACCESSION   KCOD01001587
VERSION     KCOD01001587.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 485)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 485)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..485
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="176996pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>485
                     /note="ultra-conserved element locus uce-5829"
BASE COUNT          157 a           76 c          117 g          135 t
ORIGIN      
        1 tttttttttt caatttgtta agatgctgaa atctgctttg tgtgatttat gaaggaactt
       61 gaagcgatta gtttcacagt gcatgaaaat tcctcaggtt cagagggatg tccaatctgt
      121 tacaccgcga gccgttgact ggatgagaac atgagcagct cggagccata aggagattgt
      181 gttgagttat taaacacttg tggtaaagct gcttattgtt aattccccaa tgtcctgctg
      241 aagtgatcgg ataagatcag atcggattag atcaaagagc ctgggaacca gcctttcgag
      301 cagattcatt taatcaataa agagggtctc caaagagaga gagaggcagt accgagagat
      361 tagagtaggg aaaataagaa acaacttaaa atgtaattct gtaagccaaa gcatgctttg
      421 tgtatgtgtg tgtaaaaaca gccaaaaggg atgtaagtga aaacttcatt accaagcaga
      481 cagtt
//
LOCUS       KCOD01001588             687 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 177102pyr ultra-conserved element
            locus uce-6617, sequence.
ACCESSION   KCOD01001588
VERSION     KCOD01001588.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 687)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 687)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..687
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="177102pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>687
                     /note="ultra-conserved element locus uce-6617"
BASE COUNT          213 a          115 c          118 g          241 t
ORIGIN      
        1 tgcctatttt atggtttttc tttattgaag cttgttattt tgtgtatgac agcaacattg
       61 tagttttcaa atagagtttt ttctaaagag tttcttgtaa cacagaagca ttgaggtgat
      121 caaaagatga cttctatttt aacacccaca aactggaaga tatcaacaaa gattagctga
      181 ataaagaaat aatctatgac agtgttgaga atgattctca gaattttaaa tacttgttaa
      241 aggctttgct gtatttcact tcaataaaca tcatgctcca gttactactt gaaaccatag
      301 gggcattatc ctgtgcagca cttatcaata ttttaacacg tgaaagtcaa atgatgttga
      361 aacattgaac tatatttcca tctgtgcaag ctaaaatggt acaaatgcat cctgtgtaat
      421 ggaatactac atccccagtt actttcttac aagtgatacc tgattccact gtattttctg
      481 tggttgtttc cattgctctg atggtgccca aaggaagact gtcttttaaa attaatgttt
      541 atagcattta aggagtttta acccaacctg cctcaaatcc agagaaacaa atgcttggaa
      601 attttttctg ttgcccttca gtgttaaatc tttctgcatg tgcattttgt gtgaaaatgg
      661 gattagtacc aaaagacctt gagattg
//
LOCUS       KCOD01001589             535 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 177212pyr ultra-conserved element
            locus uce-1187, sequence.
ACCESSION   KCOD01001589
VERSION     KCOD01001589.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 535)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 535)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..535
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="177212pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>535
                     /note="ultra-conserved element locus uce-1187"
BASE COUNT          159 a          114 c          111 g          151 t
ORIGIN      
        1 ttttttaaac aatgatgcta tactattgca agtcagataa tattttattt cagaaagtgt
       61 gctagctaca taatttaaaa gtccacaaat cagttgcaat ttagtgctta ttaatccttc
      121 ttaggatgta attcggtgaa agaactgctt taaaaaaatt cttttctgta ttattgacgg
      181 atctaacaac gcagtctggg ctccgtgcca aaggctggta tttcacagca gcgaccgcct
      241 tacagatgag ctgtgggaag caggagggag actctcttag ggtgccacta ctatggagac
      301 acagctgggc tgaacaagat ttgcttcaaa cgacaacaag agagacagaa agagtctggt
      361 tcgaccgctg cccaagcagg cagtaaccag aagagctagc agccaatccg gccatgctgc
      421 actgttcgaa accagctcta catcccagcc aatcagtgac atcactggtg agaaactcat
      481 ttacatcatg cagtaatgaa ctttgtttaa cgtagccttt tttcttttcc ttttt
//
LOCUS       KCOD01001590             345 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 177318pyr ultra-conserved element
            locus uce-4421, sequence.
ACCESSION   KCOD01001590
VERSION     KCOD01001590.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 345)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 345)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..345
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="177318pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>345
                     /note="ultra-conserved element locus uce-4421"
BASE COUNT          109 a           68 c           51 g          117 t
ORIGIN      
        1 aagcattgct ttatgagtta tgtaaagttt gtgctttttc atttatgctt tagaatttta
       61 accacattgt ctcacttatg cataatccat caacccaggt gacaaatagt cttctatatt
      121 tacacactag gaatatacaa ggagcatact gtattagcag ctgaaactac aaacgccact
      181 gtcaatcaaa ctggctaaca taagaccata tttcttgtca ccaagaggct taaagcaaag
      241 aatctgtgcc taattctctt aaaccttgca ggtcaaaagg ttttaaaatt atttttgaca
      301 ccatttcttt gctttgtcaa caggcctgag tactttttaa catgt
//
LOCUS       KCOD01001591             399 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 177533pyr ultra-conserved element
            locus uce-3113, sequence.
ACCESSION   KCOD01001591
VERSION     KCOD01001591.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 399)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 399)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..399
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="177533pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>399
                     /note="ultra-conserved element locus uce-3113"
BASE COUNT          120 a           78 c           83 g          118 t
ORIGIN      
        1 atgctcttga atcttagagc tctaagtctt tcctgtgaat gaacgagaaa acactcgaca
       61 ggtcgtgaat aatcgtttta atgagtgtgt aaaagcgtgc gacggggtgc acggagctgt
      121 cgggttaaac aaacaacttg taccctgacg aaatccgatt gttaaagtgc aaagtggtgt
      181 cagtccaatt tccatcccag ttctaaaaac cacagatcta agtcgcggga gtccaatttt
      241 ccccattaag aaaaataaca atatttttaa gtgcgatcgt agaccagttg catatcagag
      301 gtaccaaagc tattttgcca tttttaaaga cgatagtttt tgacattttc ctagatacta
      361 tcagatcaat gcggtaaata ttttcctgtg tgtccgtcg
//
LOCUS       KCOD01001592             787 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 177646pyr ultra-conserved element
            locus uce-2816, sequence.
ACCESSION   KCOD01001592
VERSION     KCOD01001592.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 787)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 787)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..787
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="177646pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>787
                     /note="ultra-conserved element locus uce-2816"
BASE COUNT          233 a          155 c          169 g          230 t
ORIGIN      
        1 tgggaatttg atgttaggtc tgtactgctg gctcaagccc agctgtctac atttggaaat
       61 gtatttgttt tggaacacaa ttttctggaa tggaatgtca agaaaataca taatcaagag
      121 ggcatcatag ataatgagct acaaaaacct gtttgtcacc ctcctcccac aatggcgaag
      181 agccttctac agctgctaat tagaaaatta gaacaccaca aatagattat attttactgg
      241 cagcagagcg ccccccagtg ttttgaagta ctttttgaat tgtttgctgt cagcaaaaca
      301 agtgcgctac ctgcgatcct atagacaaca aagcccggca gcaggatttt agtcaggtga
      361 tgtcacccag gtaaaattgt actgacaagc ttttaattaa agttttccca cacatctttc
      421 tgctggtccc caggagctat tattcattat gtgccgactg tcagccaatt gtgagtcggg
      481 agggaagtgt tttattttca aagcccttgc tgacagctag agaacacttt gttatacaat
      541 ctgtttactt ttttcacaca cacaatcttg ctaaagggga aatggtcatg cagtagtgtt
      601 tacagtttat ggcaataatt aaatgcatct ggcagagcag tagctgaaag aaggtcggtg
      661 tgggtgtaaa agccataaaa ttcctcctat aaacagttac cttcaccttg cagagcccct
      721 agcattttaa gaaaaagttt ctttgggaaa gggcaggtct aaacaggtgt acatattctg
      781 aagtggg
//
LOCUS       KCOD01001593             661 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 177757pyr ultra-conserved element
            locus uce-3469, sequence.
ACCESSION   KCOD01001593
VERSION     KCOD01001593.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 661)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 661)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..661
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="177757pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>661
                     /note="ultra-conserved element locus uce-3469"
BASE COUNT          221 a          119 c          104 g          217 t
ORIGIN      
        1 actgaaacat tttaattgta ttatatgtca tgttaacttg cacaaaatag caaagcagat
       61 aatatttcat tggagatgtc tataaaatat tgagcttcct tttttaaagt tcctagccta
      121 tgactgctga aataaaatct ccaagtaata acaggtaaga tttctggcct catgtatatt
      181 tccaaagtca cttactaatg gatagtaaat tgaaagttat atcttctgcc ctttataaag
      241 aaagcacctc actaatactg taatcattct gcaagcctaa caacagagga aatcatgcca
      301 taacaaatac tctgttacta atggcaacat tgatttctgc aatcagccat taagtctaga
      361 aaatgaaaga cagtttgagg taccttaagg cattacattg cccactgtta aagagctggt
      421 agcaggctgt tgagggtaat tctttttagc tcccccagtt tcgataaata ttttagtatt
      481 ggaggcaatt cactgttaca gttattaagt atacgccagt ttacttttgt tgttcttgtc
      541 atgctccagt atactctact tctgaggcca aattaatata aaaatagtgc tagtttgctt
      601 attacaaacc agtaaagaaa ttgttaagac acataaatct gcactccaca ttccagagat
      661 t
//
LOCUS       KCOD01001594             595 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 177868pyr ultra-conserved element
            locus uce-2235, sequence.
ACCESSION   KCOD01001594
VERSION     KCOD01001594.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 595)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 595)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..595
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="177868pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>595
                     /note="ultra-conserved element locus uce-2235"
BASE COUNT          207 a           94 c          110 g          184 t
ORIGIN      
        1 taagccacat aatggaaagc acgtaaaact agtttttagt agaatatagc ggtaaataat
       61 cttatcaagt actgcattag aaacaacatt cggtataaac tggttgtata gatagcctga
      121 ttgtaaagca agattaatac gaaaaggcaa gaagtctgca ataaaacctc ctaacttaaa
      181 tcatctgcat ttgtgtacaa gcattcatat ttagcaacag tcccaaggct gagattaaag
      241 ctgtttggta ggttacttca aggccttttt attgctaaat cttattatgt ctctaaaatg
      301 tagaaattaa tcacctgtca tcaaagctac agtggattat tgacttctaa atgtctctac
      361 gaagtgattc atgacagaat gaaacaggag actgaactag cactgaaatt ctttttgcat
      421 gtgataaaaa gggtctatta aaagtgttcg aacaaatgct ggctattagg taatcatcac
      481 aaaggatttt gttatcaaaa cgtggtgctt cttgaataac cttattcagt tacatagccc
      541 taatggggaa gttatctgga gaatttagat tgttcatctg agaagcctga catta
//
LOCUS       KCOD01001595             743 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 177976pyr ultra-conserved element
            locus uce-4302, sequence.
ACCESSION   KCOD01001595
VERSION     KCOD01001595.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 743)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 743)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..743
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="177976pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>743
                     /note="ultra-conserved element locus uce-4302"
BASE COUNT          221 a          166 c          130 g          226 t
ORIGIN      
        1 tcaccagtct tttgtgttaa aatagagcga aaacaagaat cattcaaaaa tgatgtgcca
       61 ggcagcctgt attaatattt atgttgacat taatattgat aagaatgcac cttatgcttt
      121 gttgtctatc cccagcatcc taagtcccct gttattcaag ctagtagcca ttacctcgca
      181 tctccctctg tacacaaagc ttcaaacagc cttggcaggg ctccagctca cttacgctta
      241 aatggacact caagcttcga cggacacaca gctaaataga ggccaataat tcaatacagt
      301 atgactgtac tggggcttct agtaaatcca tcaggcagta aatatcatct gaagccaatg
      361 caagctttta tctttccaat tttgtgtatg tctgtgtgaa gcccaggcat tcagcgaatc
      421 atgtaattta ttctgcagtg cagagcctgg gctgtctcag acatcatatt gactttttct
      481 ccatctgtca ggggcagtca ctgctacgct tttgtgcaaa cgcatcacgt tgcacttatt
      541 tatttaagtg caattgggca aggacacatt tttgcagatc aacaaatact aagaaaagca
      601 tctgaatatc attacaacag catgttaaac atttgtccta accagtttgt taaatcagca
      661 aatgcacttc cagcaaatgc ttgtaatggc tcagaaaaga ctccctaatg ttttattaag
      721 cctcaaatat gccctgttat ttt
//
LOCUS       KCOD01001596             594 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 178086pyr ultra-conserved element
            locus uce-7329, sequence.
ACCESSION   KCOD01001596
VERSION     KCOD01001596.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 594)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 594)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..594
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="178086pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>594
                     /note="ultra-conserved element locus uce-7329"
BASE COUNT          181 a          127 c          123 g          163 t
ORIGIN      
        1 ttctaaaaca cacagctttc agagaaagac atgagcatgc ttgaggaaag aataaagcgg
       61 tcagccaaga gaccctctgc tgctccagtg agacaggcag aggagaaacc tcagcgtact
      121 cagaacatca gcaccaacgc cagcatgatg cggaagggac aagctgaaga catgtcctcc
      181 aaactcaagt atgtaatgta tggtctctta catctgacaa tgccatttta gttcttgctt
      241 tgcatgtgaa aaatggccaa ataatacaaa tctaaatgtc tgaatgtctt gtctgtctta
      301 tttctaaatg gtcttgtgcc ttttttcact gcttctccac ggacagaatt atgtatcgca
      361 cttataggat gtaagtactg cccactaact ccttggtagc aaggctcttg tatcttctat
      421 cctagtcatc ccttcctgag ggtgacaggt ttgccatggc tatctaggtt atttgattaa
      481 gctacagact taagcaactg ttcaaaatat tgagagaagg accctgttct agttatgtta
      541 gacataaagc acagaaagca tgtgtgaatt gcagagccta aacaaaaagc tcag
//
LOCUS       KCOD01001597             359 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 178198pyr ultra-conserved element
            locus uce-5193, sequence.
ACCESSION   KCOD01001597
VERSION     KCOD01001597.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 359)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 359)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..359
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="178198pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>359
                     /note="ultra-conserved element locus uce-5193"
BASE COUNT          100 a           71 c          113 g           75 t
ORIGIN      
        1 aaatgcttag tgacaggaga tgttgtggtc cttacacagc tagcagggag tggagcagga
       61 gagcggacag tgctgtacag ctgcagggct gctcacaaca gggcagagct cccagagaat
      121 gtgctctttg ttcgctgcct ttaaagggta agagaaacac ttatgcatgg caaattagcc
      181 caaaaatgta tttctctaaa acacccgatt gtctggccag ctctgcagct gcagggaagt
      241 tccagggaga gaagggggag gcggcaggga ggcagggaag gaagatattg atgtcttgat
      301 tgtgggagtg agggagaaat tctcatgcct ccattcaaac agagctgacc agtgagcca
//
LOCUS       KCOD01001598             498 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 178309pyr ultra-conserved element
            locus uce-5730, sequence.
ACCESSION   KCOD01001598
VERSION     KCOD01001598.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 498)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 498)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..498
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="178309pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>498
                     /note="ultra-conserved element locus uce-5730"
BASE COUNT          144 a          122 c           97 g          135 t
ORIGIN      
        1 caagacaatt gttaacaagg cagtcttgtc ttacgtgtga cagtttcagc tcctggcaca
       61 ctaagctctt gtttgataag ctacgttcat tccatatttg tgtaataccc tggaagaaat
      121 taggttgcaa tgaagtccat ttttgtcact gcatgtagca atgaatatca cacccagcag
      181 ggtacagtgg cacctggctg tccagaccca gtgtagcaca aagccatctg ggggtaatta
      241 caacaaggta ttctttaaag accagatggg accaaggaac agaagcccct acccctccca
      301 gtcatttaca acataattcc tttcaatgat atacttaatc ctcccaccag ctacgctttt
      361 cagcttgctg ttgtccctgt tcctttatgt taattcactt gagagacaca gaaaggcgag
      421 cgagccaccg gtgcctcaag ggggtaaaag aaattattca tccctaaatt gtttccacta
      481 caccaagtac agtaacag
//
LOCUS       KCOD01001599             699 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 178418pyr ultra-conserved element
            locus uce-7510, sequence.
ACCESSION   KCOD01001599
VERSION     KCOD01001599.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 699)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 699)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="178418pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>699
                     /note="ultra-conserved element locus uce-7510"
BASE COUNT          232 a          156 c          112 g          199 t
ORIGIN      
        1 ctctcaagta gcaagtgtag catacacaac aatctcaatg agagaggcaa ttaacaaaaa
       61 ataattatat ataaagatgg tttgaaagac aatactctat ctaaaatgac ctcgctgtat
      121 tcacagcact gataaaacag ttttccttta aaaaatgccg ctttttttat tcatcaaaag
      181 agaaaagccc caaggtcacc tgtcaataac agaacaaacc ctcagtaaat cacagtgctt
      241 cacaaataaa ttcctcatca gtaattaaaa ccaggcctct ctggccctgt gttatcagct
      301 catcaaattc attgctcatc tagaataaca gatccacatc tgcagtcatt acagcatgcc
      361 agataaatca atcctctcaa tgatgctttg agccatctct gctccctttt aaccagcccg
      421 atatttattt ccccctgaca cttctgacat tctatttact gtaggcaaat ggaactcata
      481 cggcaccttg taatggcttt accaaacccc attgtggggc atatcttcca agactgatgg
      541 gcgcaataaa caaggtttta tggtgtaagt gtgagcttcc ccaggaattt gacttctgca
      601 gtgaagatgg tttattacat ttgattgcag gtggaaaaag ctatatccac tttgagacct
      661 gtcagctaaa agcaagcaga aaacttttga aataatatt
//
LOCUS       KCOD01001600             587 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 178530pyr ultra-conserved element
            locus uce-7774, sequence.
ACCESSION   KCOD01001600
VERSION     KCOD01001600.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 587)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 587)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..587
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="178530pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>587
                     /note="ultra-conserved element locus uce-7774"
BASE COUNT          148 a          134 c          113 g          192 t
ORIGIN      
        1 ttttcattgc tttcctgggc tcttccatgg cgctgcctca aattggcagt ggctgtcagg
       61 tgaaataaga aatgcgtgtg gggctttctc cttaacgcgc cttcaatctt cggcataatc
      121 ttggattccc ccacaaacac tgctaactac taactcataa aacatatcag ctgggtttat
      181 tacttttaac catctttcca attgtgctat aaaataaagg cagatgccat tttaagatct
      241 tattattatc aagggccaac tcctccagca gcacctgctt agcagcaatc tgcttgttta
      301 tagtcccttt tttataggtg acagtttaag gtggctgttc tcctgttaca aagagttctt
      361 tttaatgtgg cagaagtggc acgcacagta ggtgagctcc ttcctttcat ccagtgatat
      421 tgagatgggg tcgcaggttc acctgtgatt tttgcttgac agcttcgcca cacacatcag
      481 gctctgccaa atgctccgcc attaatttat gatttaaagt aattaacttt tgctgattaa
      541 agtaattatt tcaagtgcat tgcactcagg cccaaatgat gctcaca
//
LOCUS       KCOD01001601             671 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 178639pyr ultra-conserved element
            locus uce-5349, sequence.
ACCESSION   KCOD01001601
VERSION     KCOD01001601.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 671)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 671)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..671
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="178639pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>671
                     /note="ultra-conserved element locus uce-5349"
BASE COUNT          211 a          136 c          132 g          192 t
ORIGIN      
        1 taatttgtgt aaatgaaaat cttttctaag ttaaacaact cattacctct cagcagacca
       61 tgaactgaga aataaacacc tccaggattc ccatcaaccc acaatgggta gagctaatgc
      121 taaaagatta ctgaagtcaa gtgtttgttt tcattttggt cagttgaata tctatatttg
      181 gttgagggta agggggagat gagggaaagg tctcagtgac cagctcagat aatatactta
      241 tgaagctatg tctggaattc ctacgttggt acctatgaca ctatcaaatt cattggaaag
      301 agtttatcgc aaagttaaat gtcagcagct gcaagccttt aaatggaaca tacttcagct
      361 cctgggcaat ggcagcgatc tgttccaccc tgtcctggtg agcagccaaa tcgctctcaa
      421 aagcttcatg tttccttaac atggcacgga cttctgtcag agaggcagac tcataatcct
      481 tctgaagcaa ggtctgctct ttgcctgaaa gacaaaatta acttatttgt tagaaaattg
      541 caaatttaat caattaaatc cccccccact gaaatcagca gcaaattgtc agcttagaaa
      601 catattttaa agctctgcat agtctgctga tacaggtcta aaatagcgag tactttgctg
      661 gagaaactgg c
//
LOCUS       KCOD01001602             312 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 178746pyr ultra-conserved element
            locus uce-4594, sequence.
ACCESSION   KCOD01001602
VERSION     KCOD01001602.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 312)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 312)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..312
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="178746pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>312
                     /note="ultra-conserved element locus uce-4594"
BASE COUNT           99 a           56 c           47 g          110 t
ORIGIN      
        1 aaaaatatgt ttgtttttgc tgcctaataa ttcacagctt tgaggagaag ctaatatcct
       61 ttaagtaaaa gactaatatc tatctctgga agtgcttttt ttgacccatc tggtttgtca
      121 gaaaagtctc ctacctctga tatttataca atatcatgca aatgtcaaaa tctgaatgtc
      181 atcttcaaag acccttttat gtcaggcaac ccctttatag ggaaaaaata aacaatttta
      241 tgtatggatg ccagtccaat taataaaagc cttttttgct atgcttggct acaagcaagt
      301 ttctcttttg aa
//
LOCUS       KCOD01001603             420 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 178852pyr ultra-conserved element
            locus uce-1675, sequence.
ACCESSION   KCOD01001603
VERSION     KCOD01001603.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 420)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 420)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..420
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="178852pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>420
                     /note="ultra-conserved element locus uce-1675"
BASE COUNT          129 a           72 c           84 g          135 t
ORIGIN      
        1 aatttatgaa aaaaatgctg gtgcggtccc caaatggtta aattccactc gaacttttca
       61 ttttagttag tcatgaatat atctaacata cagaggccat cagcatctcg ccactagaga
      121 ctataaagtc tacttacata gggttcctgg gatttttcat gttcttatgg aaaatatctc
      181 tgaaatcccc gagctgaaaa ttttgatctc atttgtggat gtgagtgatg ctgagaaagg
      241 gttgaagagt gaagagaaca cttttctcgc ataatttcat ttgtcaggag aatcttgccg
      301 ctgacattgg aagagtgatt taattgattt taatcataca cctgagattg ggaaattgag
      361 ccctctgtcc tgaaaaataa ttctaagctt ccatgagaat gtctaatttg cagctaatag
//
LOCUS       KCOD01001604             629 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 178963pyr ultra-conserved element
            locus uce-291, sequence.
ACCESSION   KCOD01001604
VERSION     KCOD01001604.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 629)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 629)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..629
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="178963pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>629
                     /note="ultra-conserved element locus uce-291"
BASE COUNT          175 a          131 c          122 g          201 t
ORIGIN      
        1 ccaacgccga aactcctcac agctctccag gcctgatgga gacacataat gaaatacaat
       61 cctgtcagcc tcagcccctg ggtaacattt tcacttctac attccatttt cagtttaggt
      121 cgagattttt aagaagacag caagcagcac tccaatccca ggtgacaaga tctgctcaga
      181 tttagtcttt gaatgttgca aattaaattc cctcatcagg cctctaatca ctcttaccag
      241 atggggcttg tgctcaattt tggatccaca ggaaatttaa tggttattgt ttctgtttaa
      301 ataggagatt attgcatttt aataagttct ctttgggact tgcagcaaca atagagcact
      361 atgaattact gtagatagct gttactgcat gctggggaaa aatcaagtta ctaagtgtga
      421 caagttgctt tttcttccct tccagcaatc gctcggagtg tatttaccac caaattaagt
      481 atgtgccgtg gggataatat ttttatcctg ccgagggggg aaggcgcttg tctgtggatt
      541 ttcattaaaa tgacacatct gttcagcaat ttcacaaagt aattctgctg aaagttttat
      601 cagctaattt taattattca ctccagtgg
//
LOCUS       KCOD01001605             672 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 179073pyr ultra-conserved element
            locus uce-7249, sequence.
ACCESSION   KCOD01001605
VERSION     KCOD01001605.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 672)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 672)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..672
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="179073pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>672
                     /note="ultra-conserved element locus uce-7249"
BASE COUNT          229 a          142 c           95 g          206 t
ORIGIN      
        1 atgtcagaga gaattatttt ttcatctaaa atgactcaca ctgctatatt catagaaaca
       61 aactagaaaa tgcttcatta gtcctagttt gatgtcttat ctaattgacc tctaaagtga
      121 catcttccat cacacagact agcccgtgct atttatttcc atcttaccta aaattatgat
      181 gaatggtttg agctctattc aattattgaa aatgtgcaaa gaaacagaaa caatgaaact
      241 ggcaaagtgc tctgcattct taggaacaat ttaggctaat tagcatcaac ttctccccca
      301 ttcatcatac ccctttagaa atataaacaa actgtcagct ctaacctaac aaacagatca
      361 ctgagctact taacacaaat tattcttaca tgaaaagctc cttctcaggc aatattctcc
      421 tctagggcat ctgggaagtt gagctattaa aattgaagac atatgtttca gtcaaattta
      481 actcccagat tgtactgatc gctgttgtga cagttttcca tcagcagctg gcaaagtact
      541 acatatttta aacaaagcaa tgcaacaata gacttcaatg atgcatgttc atttagtata
      601 atatcaatac cacccaatta gcgccctaca cctggaagtg gagctactta aaattattcc
      661 ttaggtacaa ct
//
LOCUS       KCOD01001606             643 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 179183pyr ultra-conserved element
            locus uce-1520, sequence.
ACCESSION   KCOD01001606
VERSION     KCOD01001606.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 643)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 643)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="179183pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>643
                     /note="ultra-conserved element locus uce-1520"
BASE COUNT          223 a          108 c          111 g          201 t
ORIGIN      
        1 agaaccctcc agtggattca aattatatat acagactttc aatttatata tttgtcattt
       61 tcactgtgct tcaaacaatg attcatacat aaattaaaat acattttcat aaaaagggca
      121 caaattattg ataaacacat ctatgtttgc agattggtta tttctcagag gttatttggg
      181 gtcataattg taaatctcat taccttgctt gaaggagaag gtctctttca ttattacggt
      241 gctgaggtcc atatccctga agctaattgc aaggtattgc ttcagagttc taattgtttg
      301 ccatcaaaat agctgtgtaa gcttgattaa cagtgttcag caacattcat aatagtccaa
      361 gcctggtcct gcataaaata gaaactggga aaaaatcaat aagatttaat aagatcagga
      421 acaatcactt acaatagtac atcaatcaca caaagtaata ggtgcaggat ttgatagggt
      481 cctgaactgc ctgagagatt cataaccagt actcgttaat gatttgttca tttgcatttt
      541 atcaatccag ctacagctga caagcagaag gagcagtaag aaaatatgtt gacttaaact
      601 catcagagtt tgcaattcag ataacttaat aggaaaatca ggc
//
LOCUS       KCOD01001607             697 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 179291pyr ultra-conserved element
            locus uce-1410, sequence.
ACCESSION   KCOD01001607
VERSION     KCOD01001607.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 697)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 697)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..697
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="179291pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>697
                     /note="ultra-conserved element locus uce-1410"
BASE COUNT          217 a          165 c          121 g          194 t
ORIGIN      
        1 aacatcacat taactcagcc ttttttgtca aaaatactga cctgaattta agtgttttag
       61 catgttacaa ctcataaaag aatatctgac tttataaacc tactcaaagc cttttactga
      121 agagggaatt ctcagtttct gtgaaaatga tagatttaat gaatatattc ctgttataat
      181 atgacatctc atttttctct ctcataaata cttgtcaggt ttatgatttt tcactcattg
      241 gccaggaatt gtgttgcaca agctcagatt gtgggtgctc ataccaagtt taatttcact
      301 cacaagtaga gttgacaaaa gatcacagtc actaagccct ggaattaccc tagatattgc
      361 cctctgtgct ctgcaaatga aatcctacag aagacccttt ggaaaagaag aacacgatgg
      421 ttaactctca gaaatccatt ttgcacaggg cagtgtcagt acacagagaa gcactgaatg
      481 acaggcagat ctgccggctc ctggatgagc aaagtcagac cctcagcatt acactctcac
      541 tgtctgccca tctcaggctg ttcctctccc gctttccctt gttccactct catgccctta
      601 ccaggtcaga taagaaacta agaacggtga aatcagaacc agaccgcacc tgtccccagc
      661 acagccagag cagaactgaa ataaagcact tacgaaa
//
LOCUS       KCOD01001608             726 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 179402pyr ultra-conserved element
            locus uce-7503, sequence.
ACCESSION   KCOD01001608
VERSION     KCOD01001608.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 726)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 726)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..726
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="179402pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>726
                     /note="ultra-conserved element locus uce-7503"
BASE COUNT          226 a          142 c          118 g          240 t
ORIGIN      
        1 agagtattta aggcatcaac tagagttttt gttgtttaaa atagcttcac aaattgaagg
       61 gaacatttaa aaaaaaggtg ataatgtttc cctattcttg cttcaggcac ataaatgtta
      121 tttcctctgc aatgtcatgt attgaccatc tgaatcttga taaatcagaa gatagattgc
      181 actggagctc tatgtattta agtatcaagc tgatccataa ctttcacagc aaccaaaagc
      241 catttcttgt cagtgctgtc cagaatatat cctgacagtt cagtgggagt ttcagtgcca
      301 tttattttca aatcaatact caattactaa gaggaagatt cactcccttg cccattttca
      361 agatgaaatt atggactaga gcaataacac ttagtcaagg caagccactg tccattaact
      421 catgatgcta ccaaaaagcc atccagacac tttattaaag ctcagtcttt tttcagcttt
      481 taattaatca ttgtgaaaaa ggcctttcac attgtgactg atgaccagaa aaaacaattt
      541 tctcctaact gccttttaat ttcaactctg ggagtgctca ttgactgaat ctcacaacaa
      601 cccatcaatg ctagttttta atgtgttttc tcctttgtta ttgagaagaa tggagtggca
      661 atgaggcttt gtgctcctct tcataactca agtaattgat tcagtaaatg cctcacattt
      721 gctagt
//
LOCUS       KCOD01001609             599 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 179514pyr ultra-conserved element
            locus uce-3129, sequence.
ACCESSION   KCOD01001609
VERSION     KCOD01001609.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 599)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 599)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..599
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="179514pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>599
                     /note="ultra-conserved element locus uce-3129"
BASE COUNT          176 a          118 c          134 g          171 t
ORIGIN      
        1 atgaaattga atagttgtaa gcgatccttt aagtgtcccc atttgaccaa ctttgagagg
       61 cagcagcttc ctgagagagt tgaagcaatg tttgccaatc cttgtaaagc atttcacctc
      121 ttcagaggct aaagcctctc aaaaccaaga acaattaaag cgagagcctt tcagagcgac
      181 tggggaattc agcaaaataa atcagaaatc ctctgccttg gctctggagg cttgcctcat
      241 tataagagca gatctattag cccccttgcc attgtctttc atttctcaag tgaggtgatt
      301 ctaattaaat taatctgcat gtcaatctat cggtgatcaa tcaaaagggc tgaggtcccc
      361 ctttgcggca ctgtgcttgc ggctgacagg ggctgataat ggaggaagaa ataaactgtc
      421 gagcaaagtt aattagtcaa cataataggt ggattaaaca ggagctgctg attgctgttt
      481 cacatgtcga agcatgaggt gggagctgaa actgcaatta acagacaatt attatatttg
      541 gttgtaagag gtcgcatgaa taaacatatc tctgtgggtt tcagtcttta atccctttc
//
LOCUS       KCOD01001610             716 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 179623pyr ultra-conserved element
            locus uce-5694, sequence.
ACCESSION   KCOD01001610
VERSION     KCOD01001610.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 716)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="179623pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>716
                     /note="ultra-conserved element locus uce-5694"
BASE COUNT          209 a          163 c          145 g          199 t
ORIGIN      
        1 tcctgctcag atccctctcg aaaaactgtc ctcccctcag cagtgtcaca gagtccatcc
       61 ttgtcacagt ccacaaatct gcacatctca gctgggcagg ctttggaagc agacaggaaa
      121 taaaaggata ataaaaacag caagaagact ctgggatcct gctccagtcc tgctgaaatt
      181 tgttcttaaa ggtgcaggtc ctggaagatc ttttcagaat aactgacaag aacaaagccc
      241 acaattatta acctttccac ttgttcccat agtttattgt gacaagacaa tgcaataagc
      301 ttgaaggtaa tcaaaaagca attttgtagt agtgagctta aaatgacaaa cctttccttt
      361 tctaaataaa tcaccattat tcccacacgg tccatacttg acaagtttgt ttccttagta
      421 acagagtcct taaacagggt ttgtgtgcaa agattatacc tttagccaca gaagtgaaag
      481 aggagacaat aggacaaaaa ttggtccacc cacctgagtg tgtgatttca gtgtttagaa
      541 gccagggctg ggcagaagcc cagggatgcc tcttccctct gtgccttttg tggactttct
      601 ggagcgtgtg gactcagagg ggttttcagc ctccagtgcc taacctgact gtaacactcc
      661 ctgatgtttg ttcaataact cacctaatgt tgaggtcagc tgtcttataa attatt
//
LOCUS       KCOD01001611             337 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 179730pyr ultra-conserved element
            locus uce-1680, sequence.
ACCESSION   KCOD01001611
VERSION     KCOD01001611.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 337)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 337)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..337
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="179730pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>337
                     /note="ultra-conserved element locus uce-1680"
BASE COUNT           99 a           68 c           64 g          106 t
ORIGIN      
        1 acttacatat ccatgatcaa aaatgagctc ctgatggcct gaaggttgaa ataattatct
       61 ctggtggccg tgcagatctc aatgtcaaag ctaagaacca cagggcagca gaattaaagc
      121 atgaaaactg gcatgagcac agacaactgc ttgaggctct ttattactgt ttgatacagc
      181 agttctttgt tggaaatctt gggttcgaaa gcaactgtgt gtgtctaatc tcacattttc
      241 ctttatcatc aattccattc ctctgatatt tacaaaacta agcaacatca catgtgttta
      301 tcccgatttc tgaattagtg tatatgaggc tttctgc
//
LOCUS       KCOD01001612             685 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 179838pyr ultra-conserved element
            locus uce-114, sequence.
ACCESSION   KCOD01001612
VERSION     KCOD01001612.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 685)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 685)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..685
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="179838pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>685
                     /note="ultra-conserved element locus uce-114"
BASE COUNT          176 a          138 c          144 g          227 t
ORIGIN      
        1 tcgttcaacg ggagaacact gtatttgtaa taaattcctt ttgctctgga tgagttctgc
       61 attttcaatg aggttaactt ggcaacattc tagttgattt taataaaaat agctgctttg
      121 aggacaggga gctgaggttg ccaaatttac agctgccttg cacaattact cttacacctc
      181 cttcagggct acttagaacc agtaagcaaa ttaagtgtat cgattgcaat tttgttggac
      241 taaccctttt ttcttaagga ataaacttga ttcctttcag tatgtgtctg ctcagagtga
      301 tctcttttct tttcagccat aacacaaaga caacatcatg gctggatcca cgacttgcga
      361 aaaaggctaa acctccagaa gagtgcaaag aaaatggtag gtgattaagt tttccttgct
      421 gctcagaggg gattttcctt tctctttcag ttcttacaaa aatcaggcat ttgggggaat
      481 ggtgaaaggt gtttaattgc tgctttggtt agaagccata agtgatacca gttctcagtg
      541 tgccatgtgt ttctgctttt tattcccctt tctgatgcta tccaaagctg aggatcacaa
      601 gtgtgttttc tgcctgttgt gtgtgtgact ccgggactga ccctctccct catctcctac
      661 agagaacttt ggtctgcaga acaga
//
LOCUS       KCOD01001613             844 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 179945pyr ultra-conserved element
            locus uce-4843, sequence.
ACCESSION   KCOD01001613
VERSION     KCOD01001613.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 844)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 844)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..844
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="179945pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>844
                     /note="ultra-conserved element locus uce-4843"
BASE COUNT          227 a          194 c          185 g          238 t
ORIGIN      
        1 agcttgtatg aatgtaaatg tccctctttc agtggctatc caatatattt tatatatcct
       61 tctgctgctc cagaaatcaa aatatgagaa ctctcgtttt gacaaaagtg gtgcagcatt
      121 aatgctccag tgcatcccaa agcgcaggat ctaatgaggt agtcataggg cttttaggga
      181 aaatgtctga aattacactt cacttcaaga ttttaaattc tctacacaga gctgcaagac
      241 acagactctc taaacagcct atatttaagt attgtgtact tcccatctga attgggagtt
      301 gcagcctctg cacagcaact tgacaaatat tagcgtgaac tactaaggca gtgtgacaac
      361 cgcatgctga gagcaaagtc tcactaatgt gttttggcat gcaggtttgt aatcacacat
      421 ttacatatgc aatgacctac atttgcatgt cagatcacac actgtcttgc tttattaaga
      481 ccgggcacct ccctgtgctt ggcggccaga gtggcgagag agggccagag ggccgcgttt
      541 tttggcagtt gagggatgaa ctgccaccaa ggattaggct gatatggcct gagcattaga
      601 cacttcatta gaggtaatct gtttaacagt gggcagtgta tgtaaacttc acagcccatt
      661 tgcggcacct tttccccccc atggcctttc ttcaaagggc agcgtggctg agtgacagct
      721 tgtctcatct gctcccttgt cctgtcatac aatttagatg tggagagctg acatgagaag
      781 caacatagct gcacatctcc aactaccact gggtctctcc tcaccacaat gcaatttgtg
      841 gaga
//
LOCUS       KCOD01001614             776 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 180055pyr ultra-conserved element
            locus uce-5077, sequence.
ACCESSION   KCOD01001614
VERSION     KCOD01001614.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 776)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 776)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..776
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="180055pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>776
                     /note="ultra-conserved element locus uce-5077"
BASE COUNT          270 a          190 c          122 g          194 t
ORIGIN      
        1 agagccttaa taaagcatgc atcacccata cccctgtata agaccccctg caagagaagg
       61 tcacttgcat aaggcaccat tattaaggtc aacagtgcat taacagctag aaaaccagaa
      121 gttagtcctc aaggcataaa taagagaaaa attagctgca tgagaaaaat cagtttctaa
      181 ccaatagtgg ttttatccac ccaacaaaaa aattattcat gttccataca ttatgtaaca
      241 ttagaccaat tgtattttag ctgctcttaa ctggaatcaa aactgcagtc ctgattaaag
      301 aatggaaaag catatagttc cccagaacca tgcaataacc tttgtattat aatgaaaagt
      361 tatagttgtg ttacatttgt aaatacacag cttatacaat ggattacaaa tgagctctgt
      421 agcaagtaaa acaagctact tgacacattg cacgtttaat agctgcacca gacacctaaa
      481 gctcctctca cacaggaaca gggagtcccc catttccatt ctggcatcct gactcccccc
      541 ctttcccctc tcaggtaaaa aggtgcagac atccccccac cccttggaaa tgattggtgg
      601 tcgtcccatc tcacaagata ttcctcacat acaagacatt cagactatct tacagttata
      661 aaacaaccac aagaaaaaaa atgtgcctca gcatacagtc atcaagagat cctcatcgca
      721 tacagtcgcc caatcattaa cattctcagt gcacatgctc acggcaaagg cttagg
//
LOCUS       KCOD01001615             280 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 180160pyr ultra-conserved element
            locus uce-3561, sequence.
ACCESSION   KCOD01001615
VERSION     KCOD01001615.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 280)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 280)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..280
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="180160pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>280
                     /note="ultra-conserved element locus uce-3561"
BASE COUNT           75 a           55 c           72 g           78 t
ORIGIN      
        1 tttttctttt catcttggct ttctgttgca gaatgcaaat gtagcctgcc ggcggtgaat
       61 gggctgaatt gtgattaaga agaagaagag ctcctttctt tgttctcccc tcaggggatg
      121 tttactggga gagacacagc ggatcagata tgaaaggcat tcaggtcagc attgatgtga
      181 gcgaaagtga aatcatacct aaggcattca aaagaccgcc gtgtcagggg ttcagctaac
      241 ggtgcatcta ctgtgtcttc cctgttaggc acaaaaaaaa
//
LOCUS       KCOD01001616             638 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 180266pyr ultra-conserved element
            locus uce-7120, sequence.
ACCESSION   KCOD01001616
VERSION     KCOD01001616.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 638)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 638)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..638
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="180266pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>638
                     /note="ultra-conserved element locus uce-7120"
BASE COUNT          152 a          169 c          189 g          128 t
ORIGIN      
        1 agcccaagag cagagggcct gggaggtttt atttgcctcc cacggagcat caggaggaga
       61 cctggaaagc cacggcagca gcgggagaag ggcttccctg ctcccgccag cacagccagg
      121 gagccgagac aggaggtgag gctcggcagc agcaactctg ccaactcaag gaaacgtcag
      181 ggtctggaga atttcctcac gtgtttccaa tgtgtttttt atgcgtttta ttgctcatct
      241 gccatgcaga tcaaaaacgc tggagggatt ccaactattt cacacagaat ctcacactcc
      301 aggctggcaa agcctgagtt tcttcacttg aaatactgcc cagtgttatt ttgggatgtg
      361 acctgatagc ggaagcccac ggggaccctg gaacgagagc ggttccagct gcgatggatg
      421 cccgagcctg gccggtgcca gcggggctgt cggtgctgct gacaaacagg gactcggccc
      481 cttcacacca caacaaaacg gtacccagag ggggcagggg agttcatccc tcgcaggggg
      541 gttgcaagtc ctggcatgac cagcacaagg agctgtggtt tgtgctggaa gcagttttat
      601 ctggcagcag gaaccaccag ctcatttgtt aaacaaac
//
LOCUS       KCOD01001617             791 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 180376pyr ultra-conserved element
            locus uce-5994, sequence.
ACCESSION   KCOD01001617
VERSION     KCOD01001617.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 791)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 791)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..791
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="180376pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>791
                     /note="ultra-conserved element locus uce-5994"
BASE COUNT          223 a          158 c          148 g          262 t
ORIGIN      
        1 aaacctgatt aacagattat tttccactga catcacttct ttattctatt tacaagctaa
       61 ataacccaga cactcaattg ataaatgctc atttccctcc atcttaatta actattcttt
      121 tagttaaaca atccctcatt tttccagaga cacagtaata gatccattag agggtctatc
      181 tgataccagg gatcttttat tgatgaggac aagtccaaat ggttactagt ttttattttc
      241 cttgatactg tacaccatgt aatggctttg gtccaaacag taatcacaca atgggtgccg
      301 tttcttcttt cttgacctat cacactccac atgatttaat ccattgtttt ggatgttgcc
      361 aatgatttat tgtatgaaaa atgtaaatga tctggatggc agatgtttta tattttctga
      421 ccattcattt tcagtgggaa tgtaattaaa atttatgaag tgtatctgct gaattgcatt
      481 ggcaattgat gatctcctcc agtgctgtct gtctggagat gatgagtgat tgtggacagt
      541 gagatgtgtt gacaagggca gaaacagacg tgatgttact gtcatgagtg aggctacctg
      601 caaaaggctg ctgttttttc ccacaggaag aaggtggcaa ccagagctgt ctttcttctt
      661 gcaagacaga gtacaaagcc tctgcacact cctgaaagct gtcactcttc acgagtgcag
      721 tctctgtctc tctcagcaat gggcatctgg aatccacaat atcagttata acaacccatg
      781 tcaaggatat t
//
LOCUS       KCOD01001618             701 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 180487pyr ultra-conserved element
            locus uce-2851, sequence.
ACCESSION   KCOD01001618
VERSION     KCOD01001618.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 701)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 701)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..701
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="180487pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>701
                     /note="ultra-conserved element locus uce-2851"
BASE COUNT          180 a          138 c          182 g          201 t
ORIGIN      
        1 cccctgcagg tgagggtggg gaagcagcgc ttcccagagg agagtgctca cctgtaggtg
       61 ttggaagcag aaaggaactg tcctgtgggc cgtacagggg gagggagggg cactgatggg
      121 agttccagtt ccagagaaaa gattataagg ctagtagttc tttagaattt tggaaggtag
      181 aacttgacaa gttagtgcag ctctttaatc tctctttttc ttttcttaca gcaagcaagg
      241 atttggcaca gacatcctat ttcatggcta ccaacaggtt gttatcctga acctctttgt
      301 tgcactgttg tagcacacta tagcttcctt tactgcaggg ccccctgatg tgtcttaccc
      361 ttgttgcagc gggggactgg gccacctcca gtggtggtac ctccctgcct gcagtgcggt
      421 gtattggaca agggcctgat ggcacaaagg gcttaaatgc acaatgagaa gtgtagtggt
      481 gctttctgat gactttttct cgattgtgag tgcataagaa aactggtagc ctgaatagca
      541 gctaaagatt acaaagagat aaacttaacc tagaaatccg agcatcttgg taagtacaaa
      601 actattttta gtttacactt gtagttaatg gcagttttag tcttaactta attctagtgg
      661 gcctaagata ttttcaagat aggctagtac tcgcacaatg t
//
LOCUS       KCOD01001619             397 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 180596pyr ultra-conserved element
            locus uce-2217, sequence.
ACCESSION   KCOD01001619
VERSION     KCOD01001619.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 397)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 397)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..397
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="180596pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>397
                     /note="ultra-conserved element locus uce-2217"
BASE COUNT          119 a           64 c           92 g          122 t
ORIGIN      
        1 tgacgttgca aaggcgctta atcggcctcc aacgtgtaag tagtaaatgc ttttgtgttt
       61 taataaagca gaaacatgat tatcttggga tgaagtaaag caatagcctg aagatatgaa
      121 cagatcctac caaatttttt ggttgtgagc tgggagcaca gacccagttt gatgttaaga
      181 atgaccgtta cattgtcaat ggatctcatg aggcgaataa gctgcaagac atgttggatg
      241 gattcattaa aaaatttgtt ctctgtcctg agtgtgagaa tcctgaaact gatctggtga
      301 gtgctctctt aaatgtttgt agtgcaaagt taaaagcaga cttattgcac cctttgggaa
      361 ggtaacagtt cctaacttct gagataaatt gctgctt
//
LOCUS       KCOD01001620             520 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 180703pyr ultra-conserved element
            locus uce-2118, sequence.
ACCESSION   KCOD01001620
VERSION     KCOD01001620.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 520)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 520)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..520
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="180703pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>520
                     /note="ultra-conserved element locus uce-2118"
BASE COUNT          157 a           91 c           90 g          182 t
ORIGIN      
        1 taatatcaac atggctggtc tgtgttattt aattattgtc taggctcaaa gatcaccctt
       61 tccttttctt taatttgaaa aaagaaattg gattaacaga aatattaaac tgcaagactg
      121 tggaacataa aggccatggg ttgcattttg cacaggatag gttctggttg aatgagatct
      181 gggatgtgtg ccaaattaat agaaaaaatc ctgttcttcc tctccagtag ccacaatgtt
      241 cattattaag aaaagcatat gaactgtagg atttgatttt aataacacca atgtcttcat
      301 taatctgtac tttccattta gcctcattat taagtaaatg ccgagttaat gcagcaccta
      361 ttgttgttgg attttccata aaaaacctgc tctttttttt atttattcaa ggactatcag
      421 gtgtgtgtgt catgttttta aacaggccat cctctgtcaa tggctgtttt cttccctcag
      481 gtctatgcac ctactccagt aatgagataa gtaacaaaaa
//
LOCUS       KCOD01001621             402 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 180809pyr ultra-conserved element
            locus uce-730, sequence.
ACCESSION   KCOD01001621
VERSION     KCOD01001621.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 402)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 402)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..402
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="180809pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>402
                     /note="ultra-conserved element locus uce-730"
BASE COUNT          161 a           76 c           44 g          121 t
ORIGIN      
        1 tgaaatctct aaagccatgt aaaacccgaa ggcattaaaa tttattaaat gatgcaataa
       61 caacagaatt ctttatttac aatagcatta tttaacatca aataagcaaa tagcatcagc
      121 aaagcaatat taacttgcat aaatgtattt aaaatttctc tgaatatatc tacctttgca
      181 taaactgcta acactagaaa tacaaacatc aatgcaggtg aacaaagtga tgttcagtca
      241 actccgtttt gaaaataaat cacaacctga aacactgtaa gctttctcct gaagaaccat
      301 agtttatata ttgcttaatt ttacccttgt ataatctttt catatacaca catctcagat
      361 gcaacttcat gatgaactgt acaaataaaa cccacaaatg ac
//
LOCUS       KCOD01001622             616 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 181007pyr ultra-conserved element
            locus uce-2820, sequence.
ACCESSION   KCOD01001622
VERSION     KCOD01001622.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 616)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 616)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..616
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="181007pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>616
                     /note="ultra-conserved element locus uce-2820"
BASE COUNT          205 a           98 c          129 g          184 t
ORIGIN      
        1 tttataaata ttgtgtgata gtttgggaga ataggttaga accgagcaaa gtctcggtct
       61 ttgtgttagt caagccagga aaggaaattt gaatatggaa aattaaacga atattcctca
      121 gatgaaactg tctcctaata ataagtcatg tgataataaa tttcagctga gtgacaacaa
      181 tattaacaaa ctgaaaaaaa gattgatgtg catcacaggt ccatgaatgc aaaataaaag
      241 ggaaaggctt gctagtctgt gataggtaaa gtataaatat gtatcacttg gttctaaagt
      301 gagttatgat tacattttcc tacttgtacc tgaaatctgt agaggttatt catcttatcc
      361 ctgtatcagc cacgacagtt atggctatgt gctgcatacc agatacctgc tcagcagata
      421 aatcagcagc catgaaggga cttgttatca atttgatctt cagaataaat atataaatat
      481 gtgtacagca ttgttgtcac tgagaacaat ttcccttctt ctcgccaata catttttaag
      541 aggttgttcc aagagccgct ttctgacaat gccagaggga aacggagagg gcaggaggac
      601 tagatttatg gactgt
//
LOCUS       KCOD01001623             605 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 181116pyr ultra-conserved element
            locus uce-4900, sequence.
ACCESSION   KCOD01001623
VERSION     KCOD01001623.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 605)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 605)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..605
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="181116pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>605
                     /note="ultra-conserved element locus uce-4900"
BASE COUNT          215 a           93 c          102 g          195 t
ORIGIN      
        1 aattattcga tgatagaatg gaaaagtagg atccaaacaa acccagaaaa caaaagcaca
       61 agagaaaatg gccttgctat acatatttaa tgaaacagtg aaaatatcct gcacaaagac
      121 ttgagagtta aattgaaaat gtgtgtatga taaatggata taatactgtc tatgtaatgg
      181 gtttcctatt taaattttgt gaggatttaa tcagttgggc acagctgtgc aggatgcacc
      241 ataaactacg ttgaaaaata tgtagacgtg tacatttatc tgctacaaat taagctcact
      301 tagaggtggt cttaatggac catgtagcaa tcattacaag cataaatttt aaactgtctg
      361 tttccagtga atttgctttg aaaaaaaatt aatgctcatc cttagtggag cacagtaata
      421 aatggaagta cccttaatct gttaagcact aataacctag caattattca ttatgaaccc
      481 catgctgtat aatgtatgtc tgttacaatt ttattagcca ttctttactt aacctgcatt
      541 tttattccaa cttacacctt gtaattatat gatgtttgaa gtgatgtgcc attaaattta
      601 cagaa
//
LOCUS       KCOD01001624             190 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 181214pyr ultra-conserved element
            locus uce-3646, sequence.
ACCESSION   KCOD01001624
VERSION     KCOD01001624.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 190)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 190)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..190
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="181214pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>190
                     /note="ultra-conserved element locus uce-3646"
BASE COUNT           60 a           34 c           37 g           59 t
ORIGIN      
        1 tttatatcat tctttatatc atcgttgtta agagtagcag gtattgatgt acaatgcatc
       61 tgtcatctta ttgtgcttcc tatgaaaatg tgtgtacata gtacagatac cggagagaat
      121 tccacacttg aaggcattca gagatcagta acagaatggc acaagaacaa ggccttatct
      181 acactggcat
//
LOCUS       KCOD01001625             678 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 181319pyr ultra-conserved element
            locus uce-1415, sequence.
ACCESSION   KCOD01001625
VERSION     KCOD01001625.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 678)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 678)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..678
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="181319pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>678
                     /note="ultra-conserved element locus uce-1415"
BASE COUNT          243 a          141 c           91 g          203 t
ORIGIN      
        1 cttacacaat aaaaaataat acacctttcc ctgacctaca cattgtggca aggcaaatga
       61 actattccgt atagatagac acacatgcca ctaagtgatg gaaactaaca gggcttggaa
      121 acatcttttg ctttcagaat aattacctat gcacaaactc tagatggcaa cattgcactt
      181 actgtattac taaaacaaaa cgtcacactg agtccctaca tatcctcttt atcaacattt
      241 tatgtgccac agatctatag cctcttatta taagtgtaat gaagcagaag ttattgaagc
      301 attttattga ttgctcagat cacaagttta ctgtcatact gaattggcac cttacttgct
      361 gaagcaaact gctgacacct ttttaaaaaa gtgacaacta catctatttc atgaccagaa
      421 atccattttc atctctatca agacaagaat gcaattttca cttcatttaa ctgatgttag
      481 gcctgctcaa ggcatgacac ttagaaaaag acacaagttt aaggttctta aaatacctct
      541 ggtaactaga atgcagctca aaaaatttca agcctcactc aaatctataa acagtacaac
      601 attctaagaa tcacttagca agagggcatt tttctatttc aatttcaaaa ttaccaaaat
      661 attattttaa taagaagc
//
LOCUS       KCOD01001626             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 181428pyr ultra-conserved element
            locus uce-285, sequence.
ACCESSION   KCOD01001626
VERSION     KCOD01001626.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="181428pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-285"
BASE COUNT          189 a          116 c          120 g          209 t
ORIGIN      
        1 gatttataaa attccatacc tcttccactt ttatttgatg gggaaaaaaa ccattcttgt
       61 ggagaattga agttcagttt actctcagtg caaattttga aaagtggaaa ctgtgggtgt
      121 tatgtgcaca aggcagttga tttaaagaga tcagaaaggc atttaattta aaatcaattt
      181 caacatactg atttgtcctg cattacagtt acctgtagag atcctctagt catgtctatc
      241 tgtttttgat gcctctacag aataactgtc cagcatcctc tgcccaacca atcagaatgt
      301 aggaaaatct accgatatga cggaatctac tgtgaatcta cctaccagaa gtatgttgaa
      361 atctgtgtga gtcttgcctc tagctcgtgc atttagtgct cgtgctctcc tgctattcag
      421 aaattacacg acttgtgtgc aaaacctcta caagtatgtt gtttaattct ttttgtgctc
      481 taaaagctaa gactttacta aatctcttag gtatggttct gtacagtgca ataaacaaga
      541 gtgtacacgc tagaaaatct aggcaaaatg tattgcacag gtgcttcaca tcttagggat
      601 ttgaaaggtg tgttatgtat aaattagctg tcac
//
LOCUS       KCOD01001627             583 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 181538pyr ultra-conserved element
            locus uce-590, sequence.
ACCESSION   KCOD01001627
VERSION     KCOD01001627.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 583)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 583)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..583
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="181538pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>583
                     /note="ultra-conserved element locus uce-590"
BASE COUNT          154 a          112 c          113 g          204 t
ORIGIN      
        1 ttatcaacag cccttattat ctgatcgcag cctgcggtga cataataagc tacaaatcac
       61 tggtcctttc tgcattctcc taattgtgtg tattctctcc tcttgtcttg atgagaaatt
      121 gacattttct ggcggaggga ctatgtgggg agataagact tatagttgtt ttaaaggagt
      181 gcagccattc tttcagaggc ctctttattg ctctagttga cccacttgat gagtatggat
      241 ttcatgaggt ctttttcagc atttgaacta taaaaggttc agaatgacac caccccttat
      301 agacaaaaga taaccttgcc ctttgaatat attgattctt tattaactag gctgtttaat
      361 gcaatgaaat gaggcattag attgaagcct atttcaagtg ctttgaataa tctttcttga
      421 aagactttta aaagctgctc tgcaataatt ggcgtgtaca ctcttattcc ttcgttttca
      481 ttaaggaatt tttatcatct taaactcact gtgggctgac acaacatatt tcctcagcag
      541 ggctcttacc cagatgtcgt aggtggtgga ttgctctagg aat
//
LOCUS       KCOD01001628             613 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 181646pyr ultra-conserved element
            locus uce-3871, sequence.
ACCESSION   KCOD01001628
VERSION     KCOD01001628.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 613)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 613)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..613
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="181646pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>613
                     /note="ultra-conserved element locus uce-3871"
BASE COUNT          220 a          109 c          120 g          164 t
ORIGIN      
        1 tttgctaaga atattcctgt ttgttcagta tgatcgtatc tgaaatcact caaaaacaga
       61 aaagcaaaaa aaatatcatc agctgagtta aagctattct gcttttaata atgattttca
      121 gagaatgatt ttatcagtaa aaaatggaat caagggattg ggaccataaa acctgtcaaa
      181 tccccaaaaa tagctttcac ataaaatctc accataagat aaaatacagc ttttgggcaa
      241 gaggagagtc atatctccag caacttccat aaataattca ctgctagctt gtaaacaata
      301 gaaaagcaca gtatgaatgc caaagagggt ctttatatgt cataaagcca ctcaaaagtg
      361 cacttgctgc agcaagtctg gctgtgagct ttgatgtgct ggaaaagaaa ctgctatgct
      421 gaggtcatca gttagtagag aacaatttcc ctcatacaga gaagcagact tactgctggg
      481 cttctgacac agacagattg gacaagactg cataatgtgg ggggaaggaa atcttctaca
      541 caccttctaa atgaccaaag gtgaaaatat atcatgttcc gttaatggct atcaaaagtt
      601 aacgtgtggt gag
//
LOCUS       KCOD01001629             473 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 181755pyr ultra-conserved element
            locus uce-5268, sequence.
ACCESSION   KCOD01001629
VERSION     KCOD01001629.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 473)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 473)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..473
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="181755pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>473
                     /note="ultra-conserved element locus uce-5268"
BASE COUNT          159 a           88 c          106 g          120 t
ORIGIN      
        1 cctgcaaggc ttttgcagag tcaggaaagt tcaggcatga accaagttaa catgaaaatt
       61 gctagaaaac acaggaatag taatttgggg ataagaaagg agggagaact catgttataa
      121 gtgcaagtga tctggaaata gctgtttgtc ttggacattt gcagggaagt gacatcatgc
      181 tgtgtccatg gggatattaa ttctgcattt ttcaggccag attctggcac taaagttggc
      241 aaaattagac cattttcttg aagggatctc cgagccgccc acctccacca cacattacag
      301 cacacctatg acatgaccca agaacaatgg gtgaaaaatg ggctataaaa acatgaatgg
      361 cctgcttcat ataaagcaga ttttatagtg caggtgtgcc ttcatttatc gatactgtaa
      421 agcagtgaga tcatactggc agtaaaacac aacatttgta aaacaacaac tga
//
LOCUS       KCOD01001630             327 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 181863pyr ultra-conserved element
            locus uce-2454, sequence.
ACCESSION   KCOD01001630
VERSION     KCOD01001630.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 327)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 327)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..327
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="181863pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>327
                     /note="ultra-conserved element locus uce-2454"
BASE COUNT          101 a           66 c           76 g           84 t
ORIGIN      
        1 agtgtctgca catacattaa gccagtttag agaacaatgt aggcatgaaa ctactgttcg
       61 tgcagtctgg tcagggctgt gtgacacagt atacagtgtt ttgtcatcca aggaatgtct
      121 ttgatcaaga gtttatgcaa gaagaagcca tgaaacccta atccgttccc acagtccagt
      181 aaacgtgagc tggacaaaca gtggacaata gcagcaaagc ttgctgctgg aacaatggct
      241 gcaactaaaa aaattaaagg gttgctgact cacagttcct actatcagtg ttgattattc
      301 cccaggatcc tgaagatgct gaaggtt
//
LOCUS       KCOD01001631             731 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 181970pyr ultra-conserved element
            locus uce-4227, sequence.
ACCESSION   KCOD01001631
VERSION     KCOD01001631.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 731)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 731)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..731
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="181970pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>731
                     /note="ultra-conserved element locus uce-4227"
BASE COUNT          234 a          147 c          100 g          250 t
ORIGIN      
        1 gtcaatcgcc tctgtaaacc ctcttctttc aaagacctca gatcatgatc ttgagctgtt
       61 ttcatggaat taaggttttc aagtcatcct ttcagagtaa ttatttcctt taaacatcca
      121 cttttgaact tttttcaaac acaaatttgt acacaacaat aaaacacgcc gctaatttgt
      181 catgctcctc tgagcaactg tgccactcac accaagaacc actgactgtg gtgttcggag
      241 ctttcgttcc tatttcacat cactcaattg agccttctgt agaaaagctt ttaacaacca
      301 catctggtct ttaataaatc actgcacttt gtcttcctgc caaaactcct cctttatcta
      361 acttacatct tcatgatgag ataggaaatc acacattatg gtggtgacaa acaattgtaa
      421 ttatgtcatt agtagccatt tagtctacaa aggttctcaa aaaggaaata taatgtacaa
      481 taagaaatat aggataatac agttctaatc cgctttttac ttcccaagtg taaaaagctg
      541 gcataattca tgggcacagc aggcagtaat agtattttat gaactatgca gctattttat
      601 tcccctatct acttaaaaat aaaaaagctt ttaatagctt gatttagaca taaaagttat
      661 ttatgatgct tcactgatta taatatttat ttatttaact ttccatgaaa gtgattcttt
      721 ctgaaatgta a
//
LOCUS       KCOD01001632             735 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 182077pyr ultra-conserved element
            locus uce-5707, sequence.
ACCESSION   KCOD01001632
VERSION     KCOD01001632.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 735)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 735)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..735
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="182077pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>735
                     /note="ultra-conserved element locus uce-5707"
BASE COUNT          227 a          134 c          165 g          209 t
ORIGIN      
        1 atactcagat gtcgggtgtc atataaatgt aaaatgttgc tattctacag ggtggcttct
       61 atacatgtgt agattaaaca atggctttgc acaagactaa aatctgcagt gctgctgctg
      121 aaaggagtta attgtacggc tgcggacact gtggttttac tgagctaaaa gaggaggaca
      181 gtgattcatg gctgcaccca tgctcttcgt catgaaatat aaattaaaaa tagttgtatt
      241 atggtaggct acctgtattg ttacattcat aatggatatc acacatccgt ccttgctcgg
      301 tgttgcaggc aaagcatgtt agagaaacta tggcagtatt tttcttttag gtgtaacaat
      361 ctgtcagtat caaattctct tagtcagtag ggagcatata gtgttgattt actgaaaatc
      421 tgggattatg tctgctctgt ggtgagcata gatttaagag gggagaggta aggggtctcc
      481 aaaaggtgaa gaaaaacaca aatgaaacct agcaaggata gcttgacagc taagatgcag
      541 tacagtcact gtcaagtctt cttgaaggaa aacccttgca cacaggaatg ctcagagcac
      601 tgcctgtacc ttaaacaacc cgccccatta cccacttcac accaaggaac tgtaaatgga
      661 taaatgaagc tgtggctcaa aagccttaat atttctgtgt tccatgtaca aatgttttct
      721 gatggaccag aaaca
//
LOCUS       KCOD01001633             413 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 182187pyr ultra-conserved element
            locus uce-3445, sequence.
ACCESSION   KCOD01001633
VERSION     KCOD01001633.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 413)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 413)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..413
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="182187pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>413
                     /note="ultra-conserved element locus uce-3445"
BASE COUNT          129 a           66 c           75 g          143 t
ORIGIN      
        1 gtggatctgc tgatgtacag tgcctttgct gctatggatc aaaatcaaga gacccgtgta
       61 gataaatctt attgtataag tagaaaatta cttaatttca tactagaaat ggattgatgc
      121 tgcaagttaa aatggactgt ttattgaagt tccaaatgtg gtagcaaaaa atggtgtctt
      181 aagtgcttag tgtttgatgt cattaacagt ttcgtaatac tctacattgt agaaagattt
      241 tgatactaaa ctgtgtcact gtacatagtt ctaatgcatt gtattgacca ccagtacttc
      301 tataatggta gattattgtt tgtgcattca gacttttaag cattaaacat aagtaacttc
      361 ttccctcatt ggtcacagaa cataccacta cagatacttg aagttctgcc act
//
LOCUS       KCOD01001634             530 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 182293pyr ultra-conserved element
            locus uce-3493, sequence.
ACCESSION   KCOD01001634
VERSION     KCOD01001634.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 530)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 530)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="182293pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>530
                     /note="ultra-conserved element locus uce-3493"
BASE COUNT          161 a           91 c           87 g          191 t
ORIGIN      
        1 aaaaccaatc cgaaatgaaa ctagtctaaa aattcattgt tgcagctgta cctgaaataa
       61 aaatgttatt gatgactgaa ttttcttgtg tgtatatttg gtgagctgta ttaaaacaga
      121 aaaaaaaaga aattacttgt attttcttcg ctctgtgctt tgaaaacatc tatttgattt
      181 cacccccatc tgttgtaatc aataacctga ccatcttgtt ttttattaaa tgcacttact
      241 cttaatttca tccaccagtg gttttagaga gaataatgtg gagttaccta tataggtttg
      301 acattataaa tcacttcttg aggctgaatc gtatagtggt atcgattgat cctgatatat
      361 cacagaaatt tactgtcact tctgttttca attaaagata caatcagtca gataatgact
      421 taattggatt ttacagaaga ttgagtttta ttgcccagtg ctttacgagt ttagttaagg
      481 aagatcattt tatcacactt gtcagcctgc tcccgcggct ccgtgccctt
//
LOCUS       KCOD01001635             454 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 182402pyr ultra-conserved element
            locus uce-7471, sequence.
ACCESSION   KCOD01001635
VERSION     KCOD01001635.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 454)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 454)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="182402pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>454
                     /note="ultra-conserved element locus uce-7471"
BASE COUNT          149 a           77 c           65 g          163 t
ORIGIN      
        1 ccctgagctt caatttccaa cgacttattt agatgtaagc aatgacagct gtaatcatgt
       61 tttaaatctt gctttgtatc cttagttata atgttgttca attaatattc agaataatgg
      121 aagtgatgtg cccctttgaa aaagacttga atgcaggcca aagctttggg aaactgattc
      181 tcaagaggat taatcagcat ttaaaacttg cattaataaa aatctgatct tctactgtgt
      241 agcatgcata atacttttca tttttaagca ttttatttta atagtgtgct atcctttgtc
      301 ctgattttta aagggatttt aaaatctaac tccttcaaat caatcctgct ttgacccctg
      361 tgcattcttt tactgaataa aaaaattaaa gaaatccttc acaaatacct ctattgctaa
      421 gtatgagcaa aacaagcatg cttttaatag aaat
//
LOCUS       KCOD01001636             217 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 182502pyr ultra-conserved element
            locus uce-4686, sequence.
ACCESSION   KCOD01001636
VERSION     KCOD01001636.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 217)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 217)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..217
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="182502pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>217
                     /note="ultra-conserved element locus uce-4686"
BASE COUNT           60 a           60 c           40 g           57 t
ORIGIN      
        1 ggaaaaaagc tgttggaccg ccaccaaatc tccccccact agagacaaga gcccatctgc
       61 tgagctctgc aacttagctt taactaccat tcaactcgcg tctctgcaga gatcaatcta
      121 cagagctggc agatggaccc ctgcttccct gagtcgctgt gttatttgtt taataaattt
      181 aattaatatc catactgcac tggattgctc ccagaaa
//
LOCUS       KCOD01001637             374 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 182606pyr ultra-conserved element
            locus uce-5223, sequence.
ACCESSION   KCOD01001637
VERSION     KCOD01001637.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 374)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 374)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..374
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="182606pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>374
                     /note="ultra-conserved element locus uce-5223"
BASE COUNT          131 a           65 c           69 g          109 t
ORIGIN      
        1 tgagcacact gccattttta tgaatgcagt tacagatgta ctccagcagc cctggaagag
       61 tggcagcagc caggctctca aagggttaat ctgcagttta ctattgaata acataaaatg
      121 agctgtaaat aatgtaatga tatgtattgt taagctacat atactgtacc aggtgcaagt
      181 actcccactc ctcacttaga tataatctgg ggcagtcaac aaacacagat gtattttagc
      241 aaaaaagaaa gagagaatta aaacatatgt aagataattt aactgagata atgatccagg
      301 taaaacctgg cctatttttc agagtcactt taactatgcc atgtaaaata caatgacatt
      361 ttgacttgtt tttg
//
LOCUS       KCOD01001638             669 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 182713pyr ultra-conserved element
            locus uce-44, sequence.
ACCESSION   KCOD01001638
VERSION     KCOD01001638.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 669)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 669)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..669
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="182713pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>669
                     /note="ultra-conserved element locus uce-44"
BASE COUNT          208 a          177 c          107 g          177 t
ORIGIN      
        1 cgttctgctg cagtcacact ttaatgcaat tcaccattta catctgcaaa agtcacacaa
       61 ctctgcacaa tgaacatgcc cgtaatccaa taataaaagc tgtaacacgc tgccttgcat
      121 ttactacgcc gccaagattc ctccacttcc aactattttt agccaataaa gcagaaataa
      181 atccagctcg caaggcaaca acccagcacg gtatgatttc catagctaaa acactaaaga
      241 caaatataat tatattgagt acttggactt ctataaagtg gtgaacttgt tctcaattgc
      301 ctgacacaat cccagagtga tggcaacaac tggtcagccc tatttgatta ctaataagag
      361 agatgtccct tctgtcagat acctcacatt ccccactaag caaacagcta tttcagctag
      421 ttaaacatta gcattgctct ccactggtgg tgcatatttc tttaggctta actcagggag
      481 ttttccaggt ttaatttttc aggcactgga cagcaaagtt catgatcaaa agataacttt
      541 gtcctgcgag ctactgaaac acaagtcaaa ccagcctaac cctcttcctc acaaaaccgg
      601 tgtcgggtga acacccattt attgctccaa ggaccccatt tcaccagcca ggctcaatcc
      661 gaaatcgcc
//
LOCUS       KCOD01001639             427 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 182823pyr ultra-conserved element
            locus uce-534, sequence.
ACCESSION   KCOD01001639
VERSION     KCOD01001639.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 427)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 427)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..427
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="182823pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>427
                     /note="ultra-conserved element locus uce-534"
BASE COUNT          141 a           73 c           77 g          136 t
ORIGIN      
        1 tgcaactaga atacaattac tggccaactg tgtatacagt ctcaaaatgt gtcaaattac
       61 tcaaaccaaa tatcatctgt ttgtgaatgt tctgtatata attaattgag tgtctgggac
      121 agtttcattg gtaaatctgg ttatttaggg agcaatgtgc taaactatta ggcaagttta
      181 acctacatta tggcatctag agcaaaagga caaaacagta aagccttttt taatctcacc
      241 ctgatcaaac aaccctcttt ctccaatcac agctttgtgc gtgatatctt tctgctagtg
      301 tttcttattt aattaaaaca gacactgaca gaaggacatg gattaggact gtaatgatgc
      361 atttacttag attaatcgga ggctcctttt ggagtaatgg cttaaacaaa gaacaaaagg
      421 aaattgt
//
LOCUS       KCOD01001640             616 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 182932pyr ultra-conserved element
            locus uce-898, sequence.
ACCESSION   KCOD01001640
VERSION     KCOD01001640.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 616)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 616)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..616
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="182932pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>616
                     /note="ultra-conserved element locus uce-898"
BASE COUNT          172 a          123 c          134 g          187 t
ORIGIN      
        1 ccactaaagc ccttttctgt ggtggggtct ttgttattgc tctggttttt ttaaggatgg
       61 ttattgatct cttgctgagc tgagatttca gttttatgcc agatagtttg attaatgggt
      121 tggtttctgt aagtggactg aatgaggata ggaagcacaa gccgctcatg ccgccaaccc
      181 taactccgtc aagacgcata gctcattatg aaacagttat caagtataca tgaaaaatta
      241 attgggctca gtttgattct gaaaaggatc agctttctac ttggcggtcc ccccaatctt
      301 tccagatgtt gcacgctagc ccctcgagaa gcagcgaagg gagatgtatt aatacattgt
      361 attgattaga tcaagacccc tgacagttat ttgtagagat accatctggc tgctgttcga
      421 attccttcac caaaaacagg acgtgacatg ttattaatct caactctcta agtatagaca
      481 gttgcctttt ctgctaaacc gcattttacc attccgtagg agatggaggc agacctgaag
      541 ggtgctgaaa ttaaggttat tacacaaatt gagccatatg gtccaaatat ttcagcaaga
      601 aaattgccag gcaata
//
LOCUS       KCOD01001641             566 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 183041pyr ultra-conserved element
            locus uce-5771, sequence.
ACCESSION   KCOD01001641
VERSION     KCOD01001641.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 566)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 566)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..566
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="183041pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>566
                     /note="ultra-conserved element locus uce-5771"
BASE COUNT          169 a          106 c          107 g          184 t
ORIGIN      
        1 tcctgggata aaaatgaaag gtcaagagac atgaaatttc ttgtggaaaa actgtttgga
       61 tttttaggga gcctgcttag tacttgttct tcagatatcc cactgctcag aggtagagga
      121 attttccctc agtggcttat ttttatgtat tttttctttc cagaatctac tctgaggagg
      181 agaaaggcca ggccccaagc atctctaact gccactcata gtagtacttt agcagaagag
      241 atagtggcac tgctgaggac gctgcattcg ctcagccagt ggaatggact cataaacaag
      301 tacatcaact ctcagctaac ctccatcacc cacatctttg caggaaaaca gtcagaaggg
      361 gtagtttcca cgttttaaaa taagctcatt tttatagcaa tatttatttt gaaattataa
      421 atgctaaatc tttgtaaaat taagcttaat attgaaacca tttttcttaa gttgaaatat
      481 gtgtgattaa cttttaaagc agactcccta cagttaaatt ttattgttca ttgttaggct
      541 gtgttggatg actacttccc tgacac
//
LOCUS       KCOD01001642             558 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 183149pyr ultra-conserved element
            locus uce-6995, sequence.
ACCESSION   KCOD01001642
VERSION     KCOD01001642.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 558)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 558)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="183149pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>558
                     /note="ultra-conserved element locus uce-6995"
BASE COUNT          171 a          126 c          115 g          146 t
ORIGIN      
        1 tcagagccag acctctgaag ttcttactga accaatttcg catttgaaat attgtcagaa
       61 cttgtccatt ttagcaagct agacacaaca cactccccgg ctcctggcag ggaacaatgg
      121 ggagcgtgca gtggctaagc actctcactg aaaaaaccag gggatgctgc gtaattgtcc
      181 tgagaggcta gaaaggaaac aagcctctat gctgacagct tagctcggcg tgaactctca
      241 tttttcacat ggagctaatt aaaaactgaa attagttaaa tatggaaatg acacttgcaa
      301 gcactttagc tgaatcctgg cgaaatccct ctagagtgct gagacactac ctgctgcttc
      361 aaaactcccc aactgaattt cacagttaaa aggctgagca aagggaaagt tattacagag
      421 atttccaatt caaaatgtgt ctgtaaaacc ctaaattaaa tttcatggta gccctttcag
      481 taacgaggga catactgtgc agatatggtg ctcaaataac gtccctgcgt gtattctctg
      541 attatctcac ctttaggc
//
LOCUS       KCOD01001643             537 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 183255pyr ultra-conserved element
            locus uce-8036, sequence.
ACCESSION   KCOD01001643
VERSION     KCOD01001643.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 537)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="183255pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>537
                     /note="ultra-conserved element locus uce-8036"
BASE COUNT          128 a          139 c          126 g          144 t
ORIGIN      
        1 cacccacccc ctcagttcct tttcatctca ctctgtgctt tgcacattgc cgtgacactg
       61 cagtgccttc atctcactat cagagcactc cacccgagcc ttcgaagcaa ggggaaccaa
      121 aggagcattt ccaggtggga caatagtgca tctcccattg actcccctgg agcccacggg
      181 aaggcagagt tcccaaggaa cccggcatac ctgtatattt tatatctggt tgtaaatcct
      241 tgacgatgtc tttccacaaa ggataagtag ctccgtgagt ggtggaaagg ccccctgtct
      301 gaaataagcc aatcaaactc cttggagaca tgttggttgg tagcagctgg gtcctggtgg
      361 gagggctgta cgagtatatg gtcccatata aacaggaggt agaggaactc aacaagcctc
      421 cagttcatgc ttttctgtct gcctttttcc tctcattctt gctccattct gtggagtcct
      481 gttgatagga ggaagaagag agattaaaaa tgctctgatt ctttgacagc cgtctct
//
LOCUS       KCOD01001644             468 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 183358pyr ultra-conserved element
            locus uce-7047, sequence.
ACCESSION   KCOD01001644
VERSION     KCOD01001644.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 468)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 468)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..468
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="183358pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>468
                     /note="ultra-conserved element locus uce-7047"
BASE COUNT          119 a           99 c          136 g          114 t
ORIGIN      
        1 gacagatctc catcgctgag cgcctctgca ccttggctta gcagctcccg agtttctctg
       61 cggatgacgg gctgcggggg tggaagtcct cggagtgcag cgccggggct aggattgcag
      121 aggaagctga ggcctccagc cctgcacagg aagcaatctt aaatgccaga ttccaggcag
      181 agtttaacta accactgaca gctctgtaaa caaagcaggg acaaaaagag aacagctttc
      241 ccttttctgg tagttttttg gtttgggggc tgcaggggaa ttctgtaata gtcggcttga
      301 tgggatataa accgaggctg gaaaggcttt gtatatgaag aactgtaaag gggacttcat
      361 ggactaaatc ataaaggggc acggggaaaa cgcgcggatt aaactacttt tcgttctttg
      421 agcaggattt gtacatagtt tgactccccc tgggtggtat ttaaaagc
//
LOCUS       KCOD01001645             795 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 183469pyr ultra-conserved element
            locus uce-7465, sequence.
ACCESSION   KCOD01001645
VERSION     KCOD01001645.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 795)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 795)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..795
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="183469pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>795
                     /note="ultra-conserved element locus uce-7465"
BASE COUNT          234 a          135 c          155 g          271 t
ORIGIN      
        1 ttttcaagta tttgaccatt taggagcaac tcaatttggc tttaattttt catgaaatgg
       61 aacatgtcag atatctaaca atcaaattca ctatgtactt attgtataaa ttactcaata
      121 agagcggaaa ggagagttat catttttaga acacgttcca acagcttgtc tttggagtta
      181 aatagagctg tcttgatcat ttttacatat agacttcttt gaacactaaa aagaattata
      241 atcacctgat tataaattca ctgttaatat agccttagag ctgagaacat ttcactccag
      301 tagttaattt agtctgtggt aaattctcac tgttatttaa tgtcatttat cacctgctgt
      361 tttgtcttac tgtgaacatc ctgcctgccc tgtacagtct acagtacatg gaccttctgt
      421 gactttaatg tactcagaac aaaggctcca aagtgcttct attgggagga tttggcaact
      481 tgccttagat atattcaagc cattttgctg cctgtcactc agtgctttac aaattgaact
      541 ctgaggagag gtaaaaaggg tctatgaggc attttttttc tgggaagaat atgctaataa
      601 agcgccatca gcaggaagca ggttgtgtct gaaagagttt tgtcaactct gaattaattt
      661 tgtgtgttaa gaaacacggg ggtgcttcta gagctggtct gtggtaatta atccttcctg
      721 tttctggaag aggagaactg taataaatgc agcccagatt taacagatgt gtgcatacaa
      781 tgtctgcttt atgag
//
LOCUS       KCOD01001646             383 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 183574pyr ultra-conserved element
            locus uce-2692, sequence.
ACCESSION   KCOD01001646
VERSION     KCOD01001646.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 383)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 383)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..383
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="183574pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>383
                     /note="ultra-conserved element locus uce-2692"
BASE COUNT          114 a           63 c           86 g          120 t
ORIGIN      
        1 ttactatttt atagtgtagg taatttatta atactaacaa agatgagtga tttggaggct
       61 gcattatttc ttaggagtta ttttatttga taatgacatt aaatattaga aactataaca
      121 gctggtgtgt ttatccttac ttgagtgtat taacctcttt agcccttttt tccagaagaa
      181 ggattcagca ttacagattt gactgtcagc tgcagtgcct ggcggcccgt tggattggca
      241 ccctgacaga atcgaaagtc cagtgctgca agtaaacatg gatgacattg cagatagata
      301 gaactggctg acttgaggca cctgcagctg tttgcaccag aataaaagca aaggttgtgt
      361 tcactggagt ggaaaaacac tga
//
LOCUS       KCOD01001647             437 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 183671pyr ultra-conserved element
            locus uce-2642, sequence.
ACCESSION   KCOD01001647
VERSION     KCOD01001647.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 437)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 437)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..437
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="183671pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>437
                     /note="ultra-conserved element locus uce-2642"
BASE COUNT          121 a          106 c          100 g          110 t
ORIGIN      
        1 aagttaaaat gcaaacccac tgccacagca ccatgtctgg tatcatgtta ttttaaaagc
       61 agggctgtct aagccttcat gtcacaggga tgcagcaatg ctgaagtgag atacattact
      121 gggaggatga catctcactc agctagaatt gaaccaaagt aaacatcggg caatctctgc
      181 cattgccagc tggaagagcc tacctgagac aagcgagact gtgtctttct cccatgagac
      241 aacagtgatg tatgcctcca cagaggaggg gataatgcac ttgaacactg ctacattgcc
      301 tctcatggct ttctggtcct ccacacggac tgtatagggt tcccgtaaaa ctgcagggac
      361 tttggtaaat aaatctcacc cgccaggctg tgaaaggctg attgcgagta agcattccca
      421 gatctttttg tttcctc
//
LOCUS       KCOD01001648             841 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 183779pyr ultra-conserved element
            locus uce-5659, sequence.
ACCESSION   KCOD01001648
VERSION     KCOD01001648.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 841)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 841)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..841
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="183779pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>841
                     /note="ultra-conserved element locus uce-5659"
BASE COUNT          268 a          163 c          159 g          251 t
ORIGIN      
        1 ggcttctact atctaaattg cccttcccac agtgcctaag acaagcatca gtgctccatc
       61 acaaaataaa tgtgttgata tttgatagct catttgaaca cgatggtatt tacatcttag
      121 ttggttagat tttcatttaa cacaagttat gggttcacat tgaaaataaa aacaatactt
      181 ctctgttcct cttgccattc atgtctactt ttgtttcaac ctaaaataac acattgctgg
      241 agggtatttt cttaacactg ccaagcctga atgcaagccc tgtggaaaat gtttgtgttg
      301 ggcttgccat ggtccaggct aataacaacg tgatgatgta taggtgaatt cctgctcctc
      361 aagtcctctg tgacatacgg attaggtctg cccttatctt ctaagacatc tggatgagtg
      421 tctgggtttt aatttcacaa tgaaatcaca ggggacttga gttatgttat gtgcttatga
      481 acaaagtgga atatccctgg taagggcaag agtggattac cttagataac tctacttaaa
      541 ccagggaaca tttgagaatg ttgaagaaag gaaagaggtt ccaccaataa aaacaaacac
      601 aggcttaaat ttgtgttctg tgtactaaac attttaaagc tcctggaggc tgaaatatga
      661 ccacatgtaa atggactgat aaagctaaag caactcttga aaaaccagat caggcttccc
      721 aggacaacta ccagcactaa atcctaatgg catgcataaa tcatttgaag acacatttat
      781 tcagaagatg ccactttaaa gtcaaaatct gctttaatca ccagaaatag tatgtgcatg
      841 c
//
LOCUS       KCOD01001649             662 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 183886pyr ultra-conserved element
            locus uce-7981, sequence.
ACCESSION   KCOD01001649
VERSION     KCOD01001649.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 662)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 662)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..662
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="183886pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>662
                     /note="ultra-conserved element locus uce-7981"
BASE COUNT          195 a          133 c          110 g          224 t
ORIGIN      
        1 aaacttcaac aaattatgag atagaaactt tattgagatt acatcatgat tcactgtttt
       61 aaatatgaaa acatattaaa caattcagtc taaggtggac actttcttgg taggcagcac
      121 taattgctgc aatagctttt aggtgttcta atgcactcaa gtgaattatg caccacactg
      181 cttctgaatg acacagccat ttctgactcc attaatatgg aagatttcag ccaaatgctt
      241 ttaaacgata gcttctcttt atttgtaatt tcagactcta ttgatttcct tctgttccct
      301 tcattatgat ttcaattgat taccttggca actgcaataa caatgattgc acttgacact
      361 gtctgagact ctcgagatgg tatttgaata ggaatggtat catttggggg aaaatggcta
      421 caagaacctg ccattaacat tacacttaca ctttactttt attgacttcc ctctttttca
      481 caggcccttg tcagggactc tcttgcagat attggttagg atttcagtga ctccttgaag
      541 taaaagattc ttattaacaa agagaacact ttttttcagc actgtgacag ttcaggggaa
      601 cctcccactc tagatgacat ttttgttccc ttgccagaaa agctaccaaa acagtgttcc
      661 tg
//
LOCUS       KCOD01001650             745 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 184101pyr ultra-conserved element
            locus uce-1888, sequence.
ACCESSION   KCOD01001650
VERSION     KCOD01001650.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 745)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 745)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..745
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="184101pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>745
                     /note="ultra-conserved element locus uce-1888"
BASE COUNT          260 a          144 c          125 g          216 t
ORIGIN      
        1 gagaaatgca cttgtgaatg ggttggcagc tctaaaagca gggctccaat catcacaccc
       61 aagcaggtta ctcacagcta gctattgcta aacaaaaagc cccttacaac tacagctcat
      121 gctacgtttc cttttcaagg gatagtttta gatgcaaatt catttacaga ggtagatgag
      181 atgaaatgtg caacagacac acctgactaa ctcgcatttt gtatctctaa cactcaaaag
      241 tacaatgctt atggtaatga attttatcta ttacaaggga aaacaatcac ctttgatgac
      301 attatagaat aaacacattt aacagcatgc tgaattgctg aagtatcatt ttcaacgacc
      361 tcattagtgt cacttaatta aaacttcctg ctcttgactt tgatgctggt gcaggcaaaa
      421 acacagaggg aattgaacaa acaacaaaaa agggaggggt atcttctagt gataaatagc
      481 agtagttgct aatgaaacca aattatgtac ctttttcctg caactccgat aaaataatat
      541 gaaacacaca gcaactttgc atcaaacaaa ttaatcagcc gtcagcagat tcgcctgata
      601 ataatctcct gcccttattg ataatttaag gaaaaaagtt gttttttttc tgtacacaat
      661 cattaggttg gtgataatta aagcttcagc ttcagaaatg ccataataac cgttaattag
      721 caggatgcta ttttcaacat aattt
//
LOCUS       KCOD01001651             652 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 184211pyr ultra-conserved element
            locus uce-2620, sequence.
ACCESSION   KCOD01001651
VERSION     KCOD01001651.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 652)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 652)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..652
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="184211pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>652
                     /note="ultra-conserved element locus uce-2620"
BASE COUNT          190 a          154 c          132 g          176 t
ORIGIN      
        1 tttagatcct tgctatacaa gaaggttcaa aaattcctct taatacagag gaaagacctt
       61 ggtgcagaat aaaagacggt ttttttaatg ctaataaata tgctagtaca taaggctttt
      121 gcatgcaaaa agcagcagac cagttttcca tggctactgc tccttgcctt tcacacccgc
      181 ctcgcctgcc aactggatct gtcttgaagg agagacctta aatccctgca agcagcctgt
      241 aaggcacatg cagtagcagc agtgtactga catttgctaa gcaccagcgt ccctcaagtg
      301 actgggagcg aagccattga cgtcactgaa caataggcaa aatatttcct cctcctccat
      361 agtcctgaac tgtaaacacc cagcttgcat acagcaggct gaacatttgg ggagaggcgg
      421 agaaggagaa tgtgaaaaac tctcaactga tgctgctgaa aacaagcagc tgttcctgca
      481 taaccagtct ctccttattc cttccatgag gcttgctggt tccccctagt gtaggtcaga
      541 atataaagta aactataatt aagtgtgtct actggactca caagcaatat taattacaag
      601 tttctccctc tttctgtctc tgctatgtat agctgcagta ttgtaacagt ca
//
LOCUS       KCOD01001652             662 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 184321pyr ultra-conserved element
            locus uce-6100, sequence.
ACCESSION   KCOD01001652
VERSION     KCOD01001652.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 662)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 662)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..662
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="184321pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>662
                     /note="ultra-conserved element locus uce-6100"
BASE COUNT          125 a          234 c          137 g          166 t
ORIGIN      
        1 cccagttttg cccccctgcc cccatctcct ccagtaatga taagcagtcc accaggcaaa
       61 gctactggcc cgagacctgt cctcccagtg tcggcttcca atccggtgac ccaaatgtcc
      121 acgtctccca cggctcctaa cgggcttcct gaaaacctgg cttatccggt tccttcacct
      181 tctacctcag gtccaacgcc gcctccgcca cctcctcccc ccccactgcc ttcctttccg
      241 cctctgtcac tctctggacc tcaagcttct ccttctccca actccccgaa tgcctcgact
      301 ccctcatcca agcctagtgt tctcccttct ccctctgcag ctacccctgc ctctgttgag
      361 aactctctaa actctgtgct gggagactcc tctgcttctg agccagtctt gcaggcagcc
      421 tctcagccgg ttgaacctcc gacccagcag ggtaaggctt tctgttattg ctactaatgc
      481 gctcaggcgg agcccgtggg tgtcagagaa ctgcccccag gaattaatgc tgcagtgatc
      541 ctaatgccac caccctttgg aagactgggg taagggaaat gtgcctagga gctgattgtg
      601 acatgtttgg taaaccctgc actgttggtt tatttggaaa gcatcattag atgacagcca
      661 ac
//
LOCUS       KCOD01001653             526 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 184427pyr ultra-conserved element
            locus uce-4090, sequence.
ACCESSION   KCOD01001653
VERSION     KCOD01001653.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 526)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 526)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..526
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="184427pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>526
                     /note="ultra-conserved element locus uce-4090"
BASE COUNT          173 a           88 c          100 g          165 t
ORIGIN      
        1 tcttttgacc gtaggtggta tatgaggcat gcaaaagaag gatttttaca caaatataat
       61 tctaagctcc cataacggct gaattgaaag cagtgcttat ctcggccact gtgctgaaga
      121 gattgaagga gttactttcc tcagtaagga tcattgagag tgtcaccggt taattcctgt
      181 tctatgctcc tcattagcat tactctcaag tttctggtta tcatatccga aatattaaga
      241 cataataaat acgaaggtgc agataattgg atattaacca gaacatactt gactgggcag
      301 gaggtagggc cttgcttaaa ctaatcctga aatgtattaa tcaccaatta atgaatgggt
      361 ttcaaattca ttttctatta tagaacacct ctgagtatct aagctttttc taataaaatg
      421 agttggaata acaggatagg aataagaaac actccaattt gaggctggtt tgaattaatt
      481 ccctttgtta agttcattga aaacaataat catacaagca gtgact
//
LOCUS       KCOD01001654             709 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 184534pyr ultra-conserved element
            locus uce-4208, sequence.
ACCESSION   KCOD01001654
VERSION     KCOD01001654.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 709)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 709)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="184534pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>709
                     /note="ultra-conserved element locus uce-4208"
BASE COUNT          225 a          124 c          163 g          197 t
ORIGIN      
        1 ttttaatgtt attattgtat tattttaaca attttaacaa atccacaatg cttaatacca
       61 cgctaagttt atgaaattta cagattacct aaaatgctag tagttaatta cagtctgctt
      121 tccctggcat gtcagcttga ttaaatttgg agttccaaga tgaattggcc caaattcatt
      181 agtgttcccc gggtgcatat gttggtcaag gtcaagcgaa gcacattgac tgtagtgtta
      241 gtcaggaggg ggaagggttt ctaaagaagg tggactctta aaaggtctgg ggttgcagca
      301 agaaactttg atacttttta acttaataaa tcttgacagc ctaatcatgg ctaagccttt
      361 gcagtgttat tggtacagat ggcaaagcta gacatattta aagagatctc agcagctagt
      421 ggcaggagag cattgaatcc aaatgcactg ttgggctctc agagaaagtg caagaaggga
      481 ggataaaaag ctacacagca tttccatctc ttgacatctc caacagcctc agatacaaaa
      541 tatgataagg ctcctgctga gctaataagc ccaacaaatg tctgtgtcca tgaagtagat
      601 gaagtgggat caagtagttg ggggctgctg tatgaaaata agccagcacc cagggtataa
      661 tggcactgta gaaagctgca aggtcaggct gatgacagaa acactggat
//
LOCUS       KCOD01001655             472 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 184633pyr ultra-conserved element
            locus uce-7679, sequence.
ACCESSION   KCOD01001655
VERSION     KCOD01001655.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 472)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 472)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..472
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="184633pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>472
                     /note="ultra-conserved element locus uce-7679"
BASE COUNT          154 a           80 c           92 g          146 t
ORIGIN      
        1 tgccactgct aactaacatt ctgcataaaa aatgcaatcc ctgggaaaga aggagcattt
       61 atctaagtgc tgacattgaa acattctgaa taactctttg aatcatttgt actattatgg
      121 ggagaaaatg taattattgt aatcagcctt gagtctgagg ccatgttgtt taaatgaagg
      181 gagaggggag ggggaatcca gatctgaaca acgaaaatga accttgataa tggagcagcc
      241 ttgaattcca cttcatttat cacactaatg gatgtcaaga tgacctcaat caaacatttt
      301 gttttccagt tttaagcaat ggaaaatgtt atttaaattg ttcctagtaa ttacattaga
      361 gtagaaggtc aaagtcaata tgaaatagta tcaaccatga gtctagtcca ggctctttgt
      421 tggcacagtt cacatatctc cataagccta gtgcaagctt tatgtttctc tt
//
LOCUS       KCOD01001656             736 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 184738pyr ultra-conserved element
            locus uce-6682, sequence.
ACCESSION   KCOD01001656
VERSION     KCOD01001656.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 736)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 736)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="184738pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>736
                     /note="ultra-conserved element locus uce-6682"
BASE COUNT          244 a          127 c          159 g          206 t
ORIGIN      
        1 ccaccagact ctgaaaactg gatgcaatag ttctcaaagg gttacaccac caatataatg
       61 ccagtgtcaa gtttctcaat agcatgtctg ttgttttagt tcattgaaat ccacttcaga
      121 gtttttacca tgctttggaa tgagtgctcc tgacagacct ataaaaggcc tagttggctt
      181 ggtacagctt gggaaagata atgtaggaaa aatcaaacaa accaataaaa aggttctgct
      241 tgaatatagt attgaatatg agtttaaaac attgaggatg tagcccagag cagctgtaaa
      301 aaacacaaaa tgaatgtata ttaaggctgt tactatattg cagatatttt ggccccttgt
      361 ttgttggaaa atggctgtcc aaacagtctg aagtcctgcg tgtcatccga gtctcccacc
      421 tgacaaaact ggaagtagga gtataggact ttatccgtag cagacagaaa gcaatcctct
      481 ttggagacaa agctgttttg ggtcttctca ctttcctgaa agttccattg ttggttgttg
      541 aaaaaaattt actttcagca aaaaaaaggg gaacaggcct taagggaaaa atgtagaaac
      601 attggttatt cctcttcgtt agttaatcct gatagtttat agggcattga gcgtgcagag
      661 gaaaggccta gaattgaatg acaaagaaag acaaaggact gaagaaacag cagatactgt
      721 gtatcatgga aacttc
//
LOCUS       KCOD01001657             778 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 184846pyr ultra-conserved element
            locus uce-1259, sequence.
ACCESSION   KCOD01001657
VERSION     KCOD01001657.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 778)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 778)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..778
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="184846pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>778
                     /note="ultra-conserved element locus uce-1259"
BASE COUNT          261 a          145 c          143 g          229 t
ORIGIN      
        1 tgggactctt aaaggtcatt tgttgaacag ttttttctaa gcatgtatga caaattattc
       61 ccttggcaca ataaacagga ctccagccct ttaattataa tatagcactc aatatcttta
      121 gacacttcaa catttcctgt gtatcctaca catttcatta caaggaaagg ttgaacagaa
      181 ttaaaagggt gacattaccc aaagattgat agtttacctg tccaaaaggg aaggttgtag
      241 tacaagagag cacaaaggaa agaaggatac aaaccaagtt ttgattgcag aggagactgg
      301 gataagagag tttttattat ctgcagcttt tagccttatt taccatcagg ctatcttgcc
      361 acaagcatgc tttttagttc tgacagctct gaattatgac cattgtggga tcctatctca
      421 ttaactgaaa tgggagaata aaacatcaaa caatcataaa aataatttgg cactgtgaaa
      481 ccacttagga gcagctgtca aacaggttgg aagataaagt tctaaataaa aagaatagaa
      541 agtgctgcaa tgtcctgcca tatgcttcct ctgcattata gactccttaa taatatgaag
      601 tgcctgtgtt tatgcagaat aggccagaca ctccatatat gatattgatt atgccttaac
      661 cccaatttag taaagacata ctcctccttt tcctaatcag atattgcaga agcagttttc
      721 tgaaaacgtc cctaatgcca agacatattt tatctccgaa ggctgtggca ggagatag
//
LOCUS       KCOD01001658             553 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 184955pyr ultra-conserved element
            locus uce-3731, sequence.
ACCESSION   KCOD01001658
VERSION     KCOD01001658.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 553)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 553)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..553
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="184955pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>553
                     /note="ultra-conserved element locus uce-3731"
BASE COUNT          167 a           98 c          103 g          185 t
ORIGIN      
        1 ttttaaatgc tttgaacaaa catatctccc cgtacttcta agggattatt ttacatattt
       61 cttggtggaa taaagaaatt cattcttcct gtcgcagtac agaaaggcta agaatatctt
      121 tcgtcacata tatactgtag gctgttgcat tattaaaaaa ataaagggag ggggtggcag
      181 ggtaggagaa agctgcctta gagattaagt ttccctttta tgaaatcgta tttagtctct
      241 ttttttaaca aatctaacaa caatgctcta cagccgctca ctgggaaata cctttaatgt
      301 taaatgcaga ttctgatttt cttggctaat gcagaaagcc tttctattga aatataaata
      361 aggggtttgg tatatcccac taaagccttt ccagtgaatg acttctgtgg gtttttcatg
      421 gctaccctcc atggctgtaa tgtgaggctt ttatcctact attgaaaact atccgctgct
      481 attaaaaaaa atatggaagg acactgcacc tttttatctc agagctgggc tcctaattga
      541 gaaagcatta tta
//
LOCUS       KCOD01001659             342 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 185058pyr ultra-conserved element
            locus uce-6564, sequence.
ACCESSION   KCOD01001659
VERSION     KCOD01001659.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 342)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 342)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..342
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="185058pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>342
                     /note="ultra-conserved element locus uce-6564"
BASE COUNT           93 a           84 c           57 g          108 t
ORIGIN      
        1 gcctaagcct tcagccagct gaacaggacc acggtacaat cctctgtaac tgaaactgaa
       61 tcctgcctag aaagcacctg aaagcacgct tcatcccttt tcccttaaaa aaatattttg
      121 ttaaaaaaca ctatgatatg agggcgattg actatttggt ttcttctaag tagatgctct
      181 taaattaatg catataaata atttgtattt aacttcctcc cttcctgttt agcaaagcat
      241 cgaatgcaca tttcccctga gtcatttggt caataccgag tctctttgcg tttcactttt
      301 taagacaaac tgtgcctctc gctctgcctt ggccacgggg ct
//
LOCUS       KCOD01001660             558 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 185163pyr ultra-conserved element
            locus uce-4482, sequence.
ACCESSION   KCOD01001660
VERSION     KCOD01001660.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 558)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 558)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="185163pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>558
                     /note="ultra-conserved element locus uce-4482"
BASE COUNT          191 a          109 c          100 g          158 t
ORIGIN      
        1 aacagtaatt caacttgtga agtagattca gcttccagcc caaaagttta ttcaagttaa
       61 gaaaacacat cctcagatta aaaagagtat tgcaccactg tcaattttca gacgttgcca
      121 tcaggaaaaa aaaattacat ttcaggctga cgagcgacta atcaaggcaa gtgaaacggt
      181 gctgcaataa attactccgc agcgaaataa accacacaaa cagaccgatg ataataaatg
      241 taaattattt ctctgaagaa attttcttgg tatatgagta atacgaacca tcaggaagga
      301 gtcttcctta acattaatta cagaaaatga caagtgagct gatgactgcg aaggctcatt
      361 atctgagaac atattcacaa ctttgcaatt tgcgcgagat gtactcgggc taaattaatc
      421 tcccttcttt gcatgagcct cttctaattt tcatgttatt aacaggtttg cagtatcact
      481 cagtgcttgt cactctaatc aggtttcggc atgttcgcaa aagcgaagtg tcatttataa
      541 ggataagccc tcataatg
//
LOCUS       KCOD01001661             415 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 185272pyr ultra-conserved element
            locus uce-5625, sequence.
ACCESSION   KCOD01001661
VERSION     KCOD01001661.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 415)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 415)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..415
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="185272pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>415
                     /note="ultra-conserved element locus uce-5625"
BASE COUNT          135 a           70 c           98 g          112 t
ORIGIN      
        1 cactgaaaag aatgtttatc tctgtgtttc ctccagttcg ggagtaaaat tagactctta
       61 aaacctgggg atggtgtgcc tttaattttg tttagaacag aaaataactg cgatatgaaa
      121 ggtttaatga ggttagaaat ctaaaaggaa atggagtggg aatagattat caagagaaat
      181 aaagccaacc gctggagagt acactaatat taaatattag gtttctaaac caaatatata
      241 taatccattt agggacttaa tggtggttct cagaagcaca tttatctaca gcttatggtt
      301 caacaaccaa tattataact ccatttgtca ttgttaggcg agggggatgg atgtcaggga
      361 ggcgagggtc agcacacgag gaggagctcg ggagacgccg ctcccgtacc cccac
//
LOCUS       KCOD01001662             666 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 185378pyr ultra-conserved element
            locus uce-4599, sequence.
ACCESSION   KCOD01001662
VERSION     KCOD01001662.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 666)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 666)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..666
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="185378pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>666
                     /note="ultra-conserved element locus uce-4599"
BASE COUNT          196 a          121 c          114 g          235 t
ORIGIN      
        1 ttgcatctgg tactgatgtc atgtgaaatt tatttgttta aactttcagt cacacatgga
       61 aagttttgca gatggtgtct cttctcatct gttttttcca atttaaactc cagttcttac
      121 tctctcgacc ccccaatttg attccttctt cttataaaaa atagatctaa tcagtagcat
      181 gttaaacaag aggggatctt ttatgtattc tgtgttagga caaggaaagc attgctgtag
      241 atcactagaa taaacaactc aggctgattc aattacaatg cctgggccag gcttttatct
      301 gctggtgaca tcatttcaat caaaatgtaa aataatacaa tccaatagat gcaagaggga
      361 gagataggac acagactgct gcacttagtc atttaataaa aaaagtggaa gaaagctctt
      421 tctgacaggc tgctaggact tccatttcca aaactctatt accttgtata atagtattca
      481 aaagaattga atgcaggaaa ttgtctatta ctttttatta gtagaagctg ttatgtagga
      541 tacagcctgc tgcactgttt tttctttgtt cctttaatta acaagagcat gaaatccttc
      601 tattggcaag cacttgttcc ttctgttgcc ttctgttttt actgaaaagg tattcttttc
      661 tattct
//
LOCUS       KCOD01001663             424 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 185487pyr ultra-conserved element
            locus uce-7195, sequence.
ACCESSION   KCOD01001663
VERSION     KCOD01001663.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 424)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 424)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..424
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="185487pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>424
                     /note="ultra-conserved element locus uce-7195"
BASE COUNT          141 a           82 c           73 g          128 t
ORIGIN      
        1 ttttagtaaa taaaaaagac tgccactttc catcatttca caacacctag aaagacagta
       61 aaatcttcag aacgattgca tctttctttt gctggctgtc acacacgttc cccctagaga
      121 agcagatgtt tgacttgtct catgtaaaag gcaaaaattg agttacagct tcagattgca
      181 agatttgcaa tgtttgctac agtttattaa tgttaaccaa ataaaaatga cattagtgaa
      241 aaagatctac atgatatctc agaactccca agattaggcc agatggtcac ttctaactga
      301 tataatctag taagctctgt tgagagacag gctattgatt gaatttctgc ctttaaatgc
      361 aagctccata tctgcacatg tccacagtga tatcagttgc ttgaaatcca atacagaggt
      421 gtag
//
LOCUS       KCOD01001664             791 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 185597pyr ultra-conserved element
            locus uce-2980, sequence.
ACCESSION   KCOD01001664
VERSION     KCOD01001664.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 791)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 791)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..791
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="185597pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>791
                     /note="ultra-conserved element locus uce-2980"
BASE COUNT          247 a          162 c          146 g          236 t
ORIGIN      
        1 agaaaactgc ttgtactata ccaagctcat ggctgttgtt ttcagaaact gagtttgctc
       61 aatgtatgta ttttccaaca atgaatcatt tcagcattat aacacctgca tcatgtcact
      121 gtgtattatg aactctagct ctgcccacct tctgaaaact gaaacaaaaa caaagcaaca
      181 acacaagcca gattctctac tttggtgaac atttattaca gtttgagttg tgaataatgc
      241 agctaccaag ccccagctac cttatgctcc aggctggagt ctttaaacat cagtgaaaaa
      301 ggcttgatat gctctcttct caatttatcg ccactccgta agtcgatggt gtgctctatt
      361 cgcttgttaa tttcctcagg cccagactgg acatgcaaag cttgtgcaag atggtttgga
      421 agcagattta ttgaatttct tgttagggca gccagagtct aggggaaagc acatgcaaac
      481 agaataaacc tgctggtccc cttgggttaa aaatgcaatg ttttagttca tgttgcattg
      541 caaaccatta cagcattcca tgcaattcat tcaatgaaat ctacagaagt gtaaaatagt
      601 ttccactaaa cacatacagt acattagcac tttaatgcct tatagactag gaggtttgtt
      661 gctgcaagaa ttaggactat attccccttt ctaaacctga tatttaatta ttaaagcatg
      721 catgagggga gtacacacac caaaatcaca gcaggtatct gactcaatgg tgtgtttaaa
      781 taagaatgga a
//
LOCUS       KCOD01001665             601 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 185709pyr ultra-conserved element
            locus uce-3083, sequence.
ACCESSION   KCOD01001665
VERSION     KCOD01001665.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 601)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="185709pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>601
                     /note="ultra-conserved element locus uce-3083"
BASE COUNT          197 a          102 c          111 g          191 t
ORIGIN      
        1 accactttac aaagaaaaat taactacaaa aaaatgatgt ttttccaagc tttcagggat
       61 tattaaatga ccttgtcaac tcctggagaa aacccaacgt tttgcagtta aagtgagttt
      121 ttccctgttg aaaattgcct ggttttttta aagaactggt ccactgaact tagtacagcc
      181 tctgaggtct cagtgagaat cctatgatta atgaggtagc cattaatgtc agtagattga
      241 acaactgaaa tctgattata ttaaagtgct tcccaaacat tagggtcaca ttaacagttt
      301 attgaaacaa gctgataaaa tttaaaatgg tcatctaatt ccctagggct cctaattgtt
      361 gcatgataaa tcactctgta gagaaatcta ttacaatgtt ccaaacgtga aaatgtttta
      421 ctgtaccatt agtggggtgt ttgaagcaca tcagttcttt catgggggag ttttgccaga
      481 ataagacaaa actctgtata tggaggtttt ttcttttaga tcgagataat gcacaggcct
      541 tgagctgcct aaattataaa aatgagacat cttatggaca aatcatctga cagtgacttg
      601 c
//
LOCUS       KCOD01001666             764 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 185819pyr ultra-conserved element
            locus uce-6088, sequence.
ACCESSION   KCOD01001666
VERSION     KCOD01001666.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 764)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 764)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..764
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="185819pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>764
                     /note="ultra-conserved element locus uce-6088"
BASE COUNT          171 a          177 c          177 g          239 t
ORIGIN      
        1 ggaagcaggt tcagagtgtc tctttcaagc agctttttag aaggacgatc tcctctcctc
       61 ctttcccact gcccctctgc cccagctcct tctccttcct gcctgggagt aaacagtaga
      121 tgttacatgt attaacacta acacaatgct cctgggcgtg ctctgtgtgc aagtccctgg
      181 cagccgtaaa ttaattaaaa gtagacagaa accctaggaa aaaagcaagt tcccttcctg
      241 cccctctttt cctttctctc tctgtgggta aatagctaat tcctttgttc cttgctgcac
      301 tatttcattt ctgccatcat tgtcctcatt gttctctgaa acaggagggg tctgggccag
      361 gagcagccaa ggtcttggct aatgacggga agtctttaaa gtttgcgctg catttcatct
      421 tctctgtggg agttttagga cgcatccagt gtttgatccc caccgtgcaa ctttgcttct
      481 agttaattaa cagatcccca ttacactctc tcatctgcaa gcacatggga ggcctatcag
      541 gaggtaattc aaggccaatc tgagtgatgg caggaattag agaaaacggt tgttttagag
      601 ttctaacatc tttgcagagg tgccctgtaa atttgggctt gttttgttgt tgcaatcaga
      661 tctgtttggg agtagatggg aaagcagttt atttgtgttg ctgctacttt gctgtgctgg
      721 cagcctgcat ggtgtatggt tttgagggcc agttgaaacg aaac
//
LOCUS       KCOD01001667             419 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 185929pyr ultra-conserved element
            locus uce-4259, sequence.
ACCESSION   KCOD01001667
VERSION     KCOD01001667.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 419)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 419)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="185929pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>419
                     /note="ultra-conserved element locus uce-4259"
BASE COUNT          120 a          104 c           77 g          118 t
ORIGIN      
        1 atacaattta gctaataact ggttggggcc aatctttaac aagtcacata tttccattgt
       61 cccttcaccc cctgcttatg cttttaccac atcctaacaa aaacatgacc agaactggtg
      121 aaaaacatac ggttccaact aatgaatcac atactttccc gcaagtgcag taagtactac
      181 cagctgtgac agtcttgctt tggcagtgga accagtgcag aacaaggccg acacatctga
      241 aaccagctgt actgaaaaac cacaagcaat ttaagtccgt ctgccttctc aggggcttct
      301 ttgtctctgt ctatgtctct gctctgtccc taaaacttgc cagccatgtt gttttgacag
      361 agttcagagt ttcagaagtt tcaaggaaaa tccgctgatt caggaaactg tgtttcaag
//
LOCUS       KCOD01001668             251 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 186030pyr ultra-conserved element
            locus uce-803, sequence.
ACCESSION   KCOD01001668
VERSION     KCOD01001668.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 251)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 251)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..251
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="186030pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>251
                     /note="ultra-conserved element locus uce-803"
BASE COUNT           83 a           50 c           48 g           70 t
ORIGIN      
        1 cctatgtttg cataaagtag atgcagacta caatttggtg atgaattcta tgaatactaa
       61 tcttaggcta cccttgaccc tagggtcagc taaagatcaa aaccaaacca tttaatattt
      121 tccttttgca gatcaataga agcataaatt cactctcaat gacaactata atttcaaaca
      181 gatctatagg aggcatgcat gcatttccag gatgggctgc tcgtgcgcct gttggggagc
      241 acaagaaaaa g
//
LOCUS       KCOD01001669             748 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 186142pyr ultra-conserved element
            locus uce-3668, sequence.
ACCESSION   KCOD01001669
VERSION     KCOD01001669.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 748)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 748)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..748
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="186142pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>748
                     /note="ultra-conserved element locus uce-3668"
BASE COUNT          230 a          117 c          151 g          250 t
ORIGIN      
        1 agtctgttac taaagaattt taagatacag tggagatgtg aaaggcacag aagattttca
       61 tttcctgtgt tatagggtgc aaataatatc agtatgaaaa acctggcagg aagatttaag
      121 atagcagttt ttacattgat aagtatttgt tcatttcctg acaacaaaaa atataaatct
      181 cttcagaaat taaataccct ggcttgttga agcacttttg tgacgttctg tggtagactg
      241 gcttcctttc attggaaatc cacagctaga ataataatca cagcatcagt tattatactt
      301 gtatcagttc tgtgctgcaa gaggctaata cagtgtatgg ccgaattctc ctacttttgt
      361 gtcacttatt ttctctgtgg gccagatttg cattttaatg gaagtagttt atagacttct
      421 ttgctgcctt catagtgcca caagtggcat cattaagtga gttaagccgg attaatgctg
      481 atagtaaagt cagataatac aataacagag gccttcattt ccatttggat taggtgaaga
      541 gagcaggcct gtctggtgca gggtgataat ttgtaagcgc gatatgttgt acttgagagg
      601 ataagattaa atttagtggg tttaactgtc atcccagtaa gtcaattact tcatcttttc
      661 aggctttgaa tttattttat aaataaaata aatggaatat tgagctgctc cacaaccatt
      721 ttgagcttcc atgaagaaga attacaca
//
LOCUS       KCOD01001670             690 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 186253pyr ultra-conserved element
            locus uce-7495, sequence.
ACCESSION   KCOD01001670
VERSION     KCOD01001670.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 690)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 690)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..690
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="186253pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>690
                     /note="ultra-conserved element locus uce-7495"
BASE COUNT          221 a          113 c          124 g          232 t
ORIGIN      
        1 agtgtgtgtc tcgcatattt atctcactct ttcactgaag gcatttaaaa ttttggcttg
       61 gcttatggat gtttgctctc ggtgttagtg caatgtccat acatctaatt gataagttat
      121 aatgcatttt tttgtagctt taaccagtca tttaaaataa ataagatcat aatgatcagt
      181 ttccatttac ccatttatta aataacaatg ttcacactga gcagtttgat tttgtgctac
      241 aataaggcag tctctacatg atgacagatg gtgtttcatt ttgccgacac tgtgctaaag
      301 tgctgtgagt tgtgatgtgt ttgattttat tagagatcag atttaacaca tgcattctac
      361 ataactgcaa tagcattccc atttctcatc tgtaggagaa aatgaaactg tgatgaaatg
      421 taatatactc accctcaggc agaactagtg ggattgggaa ttgcaacata ataaatctaa
      481 tggatattgc actacaggac actagaaatt tactgttatt atgttcaggg aaggaacttg
      541 gttttgtaaa actcgctttt atttcactgg catcagtgca atttcacatt atttaaccat
      601 tatatcccaa cagtttgctg cattgaaaaa gtaacctaag ctcagaggaa cagaggagaa
      661 aaagaactca aaaatacaaa gtctgaataa
//
LOCUS       KCOD01001671             551 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 186361pyr ultra-conserved element
            locus uce-2670, sequence.
ACCESSION   KCOD01001671
VERSION     KCOD01001671.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 551)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 551)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..551
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="186361pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>551
                     /note="ultra-conserved element locus uce-2670"
BASE COUNT          131 a          116 c          100 g          204 t
ORIGIN      
        1 gagcatttcc ttgtggaagg cactgtgtcc gtgcatttcc acctctggaa gccatttctc
       61 ctcttgctct ccctgctgtc aatccagagt gtctcaaact tcatttgcgc tcatttcaca
      121 cagagtttgc ttatcagtct gaaaggcgac tgtctgatct ttccttttgc atgctttcac
      181 ttttaagatc ttccctttct tatgtaaaaa aggcaattag agtcgtatct gtttatttta
      241 aacaaaatgg ctgttaatta gcgtgatcaa aaaccctgcc attgtagact atgggcttca
      301 ctttgtagtt gcactaaatt gcgtacagtt tggtgccagc tgacatgata gcaacacaaa
      361 gtctgccaac ttaatgaaca aacagattta tgaggctttg ttaacttctg gtttagatct
      421 ataggttcgg aatgcattat ttagagttct tgtttcttaa tgactaatgt catgttgtta
      481 cttattaaga gtgctttaac ttgctgaaga agtttccctc gcttttgtat ccccttgttt
      541 ccattttcct t
//
LOCUS       KCOD01001672             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 186473pyr ultra-conserved element
            locus uce-6699, sequence.
ACCESSION   KCOD01001672
VERSION     KCOD01001672.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="186473pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-6699"
BASE COUNT          199 a          148 c          145 g          210 t
ORIGIN      
        1 actgttttcc ttgctgattt taaagcagta aatccttcca ttatttcctg gctatccaga
       61 ccttatgaca cagtgtgtcc tgtgctgccg tatgtgtgag aaggcttttt atggggagca
      121 atcaggctgg accccaatct ccagtgcagt gtttttctaa ttaaattgtc actggaagga
      181 acatccggaa cagcagtttt cattttcagt cgaggaaaaa acattatgag tctttgtcat
      241 ttgattaaaa gttacttaac ctttaaattg ctacagatgt aaagatagct ctgagtttcc
      301 aatgtaatcg cctccaagtt aaaatcagga aaatctttgt gtaatgaaac ccatatgtca
      361 tagtgaaagg atgcaaagca ctggcagagt gggctgctct agcaggagat tctgcaccca
      421 atcttgttaa ccaggactgc ttttggtaat ccctcatctc ctcacttgta ggaaagcaat
      481 ctgtactact gaatctttcc aaccagcaac tacaaaattt actgcagaga ggcagcttgg
      541 ggacaattgt agtaaaaacg gagcctgagg caacaaggct aaatgtggga ttgagggatt
      601 gaagttctaa agaggagatt atattaaacc ttattctgtt cccctattga gtagaagtgt
      661 ctcctcctcc tttcagcccc agcctttcct acccagtacc tg
//
LOCUS       KCOD01001673             561 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 186579pyr ultra-conserved element
            locus uce-1581, sequence.
ACCESSION   KCOD01001673
VERSION     KCOD01001673.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 561)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 561)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="186579pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>561
                     /note="ultra-conserved element locus uce-1581"
BASE COUNT          180 a          118 c          116 g          147 t
ORIGIN      
        1 gcaggagtca tattgacacc ctagtgcatg gtaactctac tcctttattg acatgttgct
       61 agtcaggagc acaatagcgc tctgtgtctg caaatcattg ctaaaatcat ctcaagaaaa
      121 aaaaagtttg aaagcccaac gcgagacaaa ggccccagag ctgcactgcg ccgctcaaaa
      181 ctcccgagtc agcaacttct attgattaaa aactaacctt taaagtaact cgcagagtgt
      241 gtggttagca tttaaattta aacatgtcat gagttgattt gtgttactga ataccaactc
      301 cgaaggagtt acattcacat cagatttttt ttctaattcc cttaagcagc taaagtattt
      361 catgaaatgt caatagggca ggggggaaaa aaaggtgttt tggagggagg ggactcgcgc
      421 ccagcctcgc cgtttctttt cccatgcaaa tagtcacccc aaaaagaaaa gtgtggggag
      481 cgacacacaa taattagacc tttgtctaac tttcccaagt gccagagaaa gacagattaa
      541 ttaaatatac aacagtgttg g
//
LOCUS       KCOD01001674             581 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 186687pyr ultra-conserved element
            locus uce-6048, sequence.
ACCESSION   KCOD01001674
VERSION     KCOD01001674.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 581)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 581)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..581
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="186687pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>581
                     /note="ultra-conserved element locus uce-6048"
BASE COUNT          173 a           95 c          101 g          212 t
ORIGIN      
        1 atccagctca gcttttgttt ggatgtaact aaaagcaagc acaaatatat tatgcctata
       61 ataaacctag atcatagatg gttagttaat tttgtattgt tcatactgta tgggtactcc
      121 taatgattcc attagagttc aaataacaga attcagcaca aatgtatttc tactgagcgg
      181 tagaaacaca atttctctgg aactgcagct ggtgtagttg aagattagtc tcttactatc
      241 ccttagggag atgactgtct ctgccagctg acttagtttt tatactgcca acgatttatt
      301 agattgcttt gctcttaagt gtgataatag gccttatgct tagcaaggtt tagagacttc
      361 cagtgcatta atattttatg gcaatgacag tcaagacaca ttttgtttac ctaacaagac
      421 aagccagctg atgtgtacta gagattagat ttaactaagg aactctgcca attatgtctt
      481 taatgctttg caatgatttt tataattgta atctaatatt tgatgcatca acattttgtt
      541 ttttgtgtga ctcaagtttt tactcagttc tatcaatata t
//
LOCUS       KCOD01001675             577 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 186796pyr ultra-conserved element
            locus uce-4566, sequence.
ACCESSION   KCOD01001675
VERSION     KCOD01001675.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 577)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 577)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..577
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="186796pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>577
                     /note="ultra-conserved element locus uce-4566"
BASE COUNT          169 a          101 c          119 g          188 t
ORIGIN      
        1 atgaataaat atgcttatat aagggatggc tttgtagatg aagaactttt ctgctacggc
       61 ttgttcaccc gattttagtg aaatcctttt ataatgaaaa tatccatcca tgctcatggt
      121 ttgattcagt acagtttatt taaaactggt aaagagttgt atttttattt gacaggccgg
      181 acctgataga catgagtacc gttgctgttc aaagcaacct tgcaaattta gaacatgctt
      241 tttttgtagc agaaaaactt ggtgttgcca gacttctgga tcctgaaggt aagagagctg
      301 cagatggccc cccaacacta aaataaaatc caatggttgt agcatatttg tgggcattct
      361 tacaactgtg tgataaagca ctgttctgtc ttgctctttt agatgtcgat gtttcctcac
      421 ctgatgagaa gtcagtaata acttatgtgt catcacttta tgatgcattt cccaaagtac
      481 cagaaggtgg tgaaggcatc agtgcaaatg taagtagacc actcgtggac attaataaaa
      541 ttctggattt cagatccaga atgttagcta ggtcttc
//
LOCUS       KCOD01001676             497 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 186906pyr ultra-conserved element
            locus uce-3894, sequence.
ACCESSION   KCOD01001676
VERSION     KCOD01001676.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 497)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 497)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..497
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="186906pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>497
                     /note="ultra-conserved element locus uce-3894"
BASE COUNT          143 a           94 c          101 g          159 t
ORIGIN      
        1 aaaaccaaac tctggaggaa atgctctggt ggaaatttaa gcacaacctc agacttaaca
       61 aagaggctgg gagttgttag gctccttaga tgtgtgggaa acttgttgaa cgtttcttct
      121 ttgaaaatgg aacactatta ataatagttc cattgagcga tcttgccatc tgtgagacat
      181 taacccaaag accctccttc tcttttcagg ctggacaatt tgcttaatat ggcctatggc
      241 gtaaagaggt aattagaatt ccacagattg ccagatgtcc gtgttggcac agattggtgc
      301 tacaattttt ttttaattca ctaactttac caccagcatg tcaaattctt tttaagtttg
      361 gacttcagtt ggttttgtta cttttcacgc acaagttcat ttacaggtgg gcttctcaaa
      421 tggtttaggt gcaacagctt aagtggtgcc agaatcaaaa ctattaactt gaaacaaatc
      481 tctgatctga cagtgga
//
LOCUS       KCOD01001677             554 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 187117pyr ultra-conserved element
            locus uce-777, sequence.
ACCESSION   KCOD01001677
VERSION     KCOD01001677.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 554)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 554)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..554
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="187117pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>554
                     /note="ultra-conserved element locus uce-777"
BASE COUNT          190 a           93 c          117 g          154 t
ORIGIN      
        1 tttttccttt cgctacaaaa aatgacagaa agttaaagca acctaagaat cttctaaaac
       61 tatttgcagt ttcagaaact aggtaaaaga atgcttttgt aatagatttc atgcagcagt
      121 tggcattggc agtactgcaa aaagagatgt attctgtcgt gctctgtttg atcaagtgct
      181 aaacccgtgt gatcaataga gagacagatg tcgggtgcag atggcgatgc cgtgatacct
      241 ggggcagagt gggcctgcca gaatgacaga atgggaacaa ggaagagcag caatgcaaca
      301 gaatgtgaca aatgaaatta gggtttatac tagtcgataa tttacagcta atagaaagtg
      361 acagaatttt tcagcataca gcacatttac tctcgcaata ctatagtcaa tgcatttttc
      421 atgcaaaaca ataggagctg ctatgaaggc ttggcttctg ctatatgtat tttgttacat
      481 tgcaacttgt acaattgata tttaaacaaa gctagtaaca tcaaacttca agtaagcacc
      541 aagtgtatga aaca
//
LOCUS       KCOD01001678             815 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 187227pyr ultra-conserved element
            locus uce-1904, sequence.
ACCESSION   KCOD01001678
VERSION     KCOD01001678.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 815)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 815)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..815
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="187227pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>815
                     /note="ultra-conserved element locus uce-1904"
BASE COUNT          249 a          142 c          175 g          249 t
ORIGIN      
        1 tttttcaaga aggcaggcag gatttaactg ggtgttgttt tcttttaaaa cactaaaggt
       61 ctgtttttat gataggttca aaattctcag cggctatctt gttgtgtgac aggagtttac
      121 agcattagtt tcaccagaca aggactggtg gagtaaaatt agtcatgtat gtaaattata
      181 atcatgctga atagttgtat gtgctcattt agccatttta acagtgtgtg atgttatcct
      241 ctctgcagga ctaataagca ttagccataa tgaggtcagt cagtcagtca ggcattatca
      301 tgggatttaa ttgggacact ggtctctgct gaagtgaaaa ttaataactt ttgtcaatgt
      361 tctggcgaaa tgttctgtct tattaaacta tgagggtcaa ttagaaagca ttatgtaata
      421 aagtccccag cagcagaact caaattgagt tataccacag tcattattcc aggacgattg
      481 catttgaaaa tggaaaacca gcatgccata tggagggcgc aggttatatt tacaagcatt
      541 gcatgttaaa gcttcagcaa gaaggaaaca attaaatgta atactgaaat aaatcaaagc
      601 actgaaagtg ccatgttgtg ccaggcgctt aatatagcca gcatacccct agatgcgact
      661 aggcaaaatg gcacctgttt ataagccttg tttgggttct gtcagacaac gtcctccctc
      721 tggattgctc tgatgattca aaatctgggg cacacctgga aggctcagcc aggcacattg
      781 actcatataa ataacagttt attgtatggc tatta
//
LOCUS       KCOD01001679             743 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 187337pyr ultra-conserved element
            locus uce-7576, sequence.
ACCESSION   KCOD01001679
VERSION     KCOD01001679.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 743)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 743)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..743
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="187337pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>743
                     /note="ultra-conserved element locus uce-7576"
BASE COUNT          216 a          155 c          143 g          229 t
ORIGIN      
        1 aaaggtaaag aggaaaaaag tgttgtttat agaagccagc tgctctggct tcggcgccag
       61 cagctcttca tcctgctatt ttacgctcgt aacccccact gcccccactg gcacaggtac
      121 aactaaatgt tgacttcaat gcttcagaga gcactcaact gattctgtac atgattaatt
      181 gccaaagaca tggctgacca tatggaacag agaaagcatc aagtaattca tacttctgta
      241 tatgatcatt tggcccctgt tgttttaatg tacaggaaag agctagtata gcacagacct
      301 ggtgtcttgc ccttgacagc ccattaagaa atctcaaagc acctagttga agttatgctg
      361 ttggcttttc aatagcagcc taataaaaca gaagcaaagc tttccaacta gtcttaaatc
      421 tttcacatac agtacattaa ccactgctgc taaaacaact ggtttcttat gataggaaat
      481 gggatttgat ttctagcctc tgcatactta ctgaaagcct ttttctgacc tttggagggt
      541 ttacaaaatc attgttcgtt tttcctgcca ttttcccagt ttcttgccat ggtgatccta
      601 atagatttgt ttaaggttca gtacattcta ctcttactag ctgttatatg caaactgtgc
      661 aatgaaggta ggctcatggg agctgaaagg aaagaaatta ttattttctt tctgagagtc
      721 agagaagtca ctgcaatgtc taa
//
LOCUS       KCOD01001680             697 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 187447pyr ultra-conserved element
            locus uce-7370, sequence.
ACCESSION   KCOD01001680
VERSION     KCOD01001680.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 697)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 697)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..697
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="187447pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>697
                     /note="ultra-conserved element locus uce-7370"
BASE COUNT          214 a          144 c          109 g          230 t
ORIGIN      
        1 atgtttatgg aggtttcttt ctgagggctg atctgtgctt ctagttcaag tcctctcaca
       61 aatttgaaca agttcagcat cttccaaatt gacccatata agtcactact gaaaccacat
      121 ccaaatggct ctgccatacc ttccacagaa atgacctaaa ctttgtcagg ttcacgtgtc
      181 cctagagatg atctcatttc actgcttcaa aagagctttg gtctgcacag cctgtagcag
      241 caaatttaca cttcaaaaag cagacagctt tttccacatc ttattcactt aatgggtgag
      301 aatgtaaaat tagttccgtt gctgatgagg accttgagcc aaatgaaaag tgttcatttg
      361 tcagcacaga cttacagcct aaaacatgat tatatagcta atccaataat ggattttgat
      421 gctgagcatt tatttatata caaaatgtct tgttatctgt tgataatcag gctctacaat
      481 ttactctctt ttgtgtcatt agccatagca acatcttcca gacatattac atttgtgtgt
      541 caacatataa acacacatcc tgaccaaaat gctctctttg ccagcactgg aatttgagct
      601 tttaaaatat tagtaggaaa ttaatcatga gaacccctct gcatcttaga agtcttaata
      661 gattaaaatt tgaaacataa attttgtttc cttatct
//
LOCUS       KCOD01001681             316 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 187558pyr ultra-conserved element
            locus uce-4609, sequence.
ACCESSION   KCOD01001681
VERSION     KCOD01001681.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 316)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 316)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..316
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="187558pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>316
                     /note="ultra-conserved element locus uce-4609"
BASE COUNT           99 a           75 c           57 g           85 t
ORIGIN      
        1 tctggtgaag gagacatgtc ttacactttg ctaacattat agccagattt cacggtcatg
       61 ggaaaacaaa acaccccaaa tggagcagtt attaattcaa taaatccagc tgctttcagt
      121 gctctgggca aaaggcaaag ttaaaagcag ctgcttgttg acgacatgtg cgacctgacc
      181 agggtaaggt agctgcttta gcacatcatc caccactttg aaggctgact gcactcaatt
      241 tcttagacaa tctacacacc attttcagtt ctgtacctcc ataatttatc acaacaatac
      301 ctcaagcata cagatt
//
LOCUS       KCOD01001682             709 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 187663pyr ultra-conserved element
            locus uce-5810, sequence.
ACCESSION   KCOD01001682
VERSION     KCOD01001682.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 709)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 709)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="187663pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>709
                     /note="ultra-conserved element locus uce-5810"
BASE COUNT          231 a          140 c          133 g          205 t
ORIGIN      
        1 tcagaaatgg aaagtaggca aattcaaata tagattgttg gaagcttttt aagtaataac
       61 ctttaatcct tctctcagtg ccatgtggtt tccagtgtac acaaagtaag gagtgaaaag
      121 gtaaaaataa aacaggcata cccttaatat attccagaat tcataaatca tttgtaaatt
      181 tagtcctttt ataaaagaat ccttatataa atcgggggga gggagggcat caatcccata
      241 tatgaagcac aatttaagcc caacatcact gaccaatcaa aattagtgaa tgcactgcat
      301 ctctctgcag tgaggagaag cgacaaggta ggctgtcatt ctgcaaaagc tgcccatcgc
      361 aagctttcct ctcagaagca ctgcttttct tttttagaaa gcctgaatct cagtggtgtc
      421 tctggagaca agaagccttc agtatgttaa attacgttca ttatgtattt tcagatgctt
      481 attgattcta ccgtaggaag agtgggagac tgcagcagcc tgtaaaccag aactaaagca
      541 attgtataca ttagcagtat gctgaaacaa tggcacagta caggcacaaa ttttcagtaa
      601 ggtcattttt tgaagatatg cttattaccc tctttccctt ctactctgct aacaagtgaa
      661 caaaatgaat ccctccaacc tggaactgct tcacctgcat cgagaattt
//
LOCUS       KCOD01001683            1050 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 187773pyr ultra-conserved element
            locus uce-1278, sequence.
ACCESSION   KCOD01001683
VERSION     KCOD01001683.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 1050)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1050)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1050
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="187773pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1050
                     /note="ultra-conserved element locus uce-1278"
BASE COUNT          289 a          189 c          201 g          371 t
ORIGIN      
        1 ttatttgata gtctgaattc aggatatggg aggagggagg aaatccatat tgaatctcac
       61 aaggaccaca ccttaccttt ttgcatttat gagagtgctt ctgctacctg ttcagaaaga
      121 gttaaaaaat ctcagaaaga attttcctgc atttgaattt aaaagtgctg aagcagtgaa
      181 tactgtcaga taagtaaaaa tcgtttgtgc tttgttgttt ttctttttgt gtctccttaa
      241 tgctttattg tggtcttaag tcccttttag catttgcata aagttcacga tagatccctc
      301 tttaatgacg tgccgatcat tagatacctg tgtgtcaata acatgctctg atgctatgtt
      361 ccattgacag tcacaccgtg cccctccatc tgcttttgtt ttgaccctat ctttgaactt
      421 tatcttggtt gctggccagt agttttccct ttaattacaa gaaggaaact gtcaataaaa
      481 tctgttaaat gggatgcaat gagtggcttg aatgggcgga tggctatttg ttcaaattct
      541 gcagcattca aggtattgac agtttgtttt ctggggccat atgtgacgat caatctcagg
      601 ctgggctcag ccgcgctgaa aaatgaaaaa ccagattgct tttgcttact tgtggatgac
      661 gacttgtgat ttggcgcggt cctagtgaga tgagaccttc tgcccaaatt gcccccctga
      721 gagccaggac gcgtgactgt ttttagaaat aattttttaa ttgattttgt aattaacagt
      781 tcatctacaa tattgatgca tgaatcctca gattgatagg agggaaattg ttttcaacaa
      841 tgaagttgta ctttcctatt tatctttgta atgtgattta gcactctgca tttttaattg
      901 gaaatataat tccaaagcca aaatgcttat tagtttcttt gtaaatattc tccatcccac
      961 taactctgcc cttaatttta gaatattatc ttattccaga aacaaaatgt tgaaatgcct
     1021 ctcagagatc aaaattattc ttaattgaag
//
LOCUS       KCOD01001684             758 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 187882pyr ultra-conserved element
            locus uce-2079, sequence.
ACCESSION   KCOD01001684
VERSION     KCOD01001684.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 758)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 758)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..758
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="187882pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>758
                     /note="ultra-conserved element locus uce-2079"
BASE COUNT          206 a          155 c          152 g          245 t
ORIGIN      
        1 tggctgctcc agcaagtgtc agagtaagca aagaaacctt cactcctcaa tcaaacttac
       61 ataaactttg cacacgagtc ttggacgttt ccatttttgg ctcacattca tgcagcagaa
      121 ttatttagac aagctctaat ttgcccagtt tggaatggga gggaaaatgt atggtgctgc
      181 caggcagaag attatatctt cgttttggtt gaggtttcag gctcttcaga gagcctctgg
      241 ttgtggctgt cactctgtgc cagactcaca ggttttttta ttgtccctgt cagttagcag
      301 cccaaggtta ctgccagctc tctgtcagtg ctttgatttt tgtcagctat ggccaggtcc
      361 ttttagttat ctgctatctt ttcagctttg ttcagcctga gctctacttg tctactaatt
      421 agctctttgg agatttccct tttaaaactc actatcacag aggacaggaa ccgttcaaaa
      481 gttttgtgct tcatagaaat tccatattca tccacatccc atacagccat ctttttaaaa
      541 ttaaaagtgg caggtcaggc caatttaagg tatataagca gcacagcctg taaaaagata
      601 cctttaggtt cttgatcagg tatgtagatg aatgacagaa aaagagaaag gtttccactg
      661 aaaggaccta ggtgtacgaa taaaaaagaa actatcattc tgtgtaacat attctcattt
      721 tctttatctt ctggtgtgca aatattgtgc tagctgaa
//
LOCUS       KCOD01001685             559 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 187992pyr ultra-conserved element
            locus uce-362, sequence.
ACCESSION   KCOD01001685
VERSION     KCOD01001685.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 559)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 559)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..559
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="187992pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>559
                     /note="ultra-conserved element locus uce-362"
BASE COUNT          193 a           85 c           92 g          189 t
ORIGIN      
        1 gctaaaaagt atcctaatca tatatatctg aaactgatta aaaaaaatca gcaaaatgaa
       61 acaaattgct cataaatcac attaataagt ggggttttaa ctatctgtag catgtagaat
      121 attaacatct gatgtgccta tgaatagtca ttcctactag tatacattaa atgttgtaat
      181 tggtttaaat cagcataggc catctgtctt taatactctt attacaaggc agtaagcaga
      241 gaactattag agctgcagta taagctgtaa gatctttacc cgttcttaaa tcatttaaaa
      301 ataatgagag ctttagcctt tatctaatta acgagtgcct tctttgaatt agaaaaactg
      361 tatcatttag cccacggttg tttagtaaat tggcttggtg gcatgtaagc taatgcaggg
      421 tagcagttgc agtgtcttgt tcctggcttc ttattacttg aattataatt caatgatcac
      481 cttagatcat gggctattca taaatcagaa gcctgacatc agatgaaaaa ttgtattaat
      541 atatgaaact tattatata
//
LOCUS       KCOD01001686             682 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 188100pyr ultra-conserved element
            locus uce-5296, sequence.
ACCESSION   KCOD01001686
VERSION     KCOD01001686.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 682)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 682)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..682
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="188100pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>682
                     /note="ultra-conserved element locus uce-5296"
BASE COUNT          221 a          107 c          128 g          226 t
ORIGIN      
        1 tttttttctt atggaaagta tttacatgtt tattttaagc ctaacataaa tgtaaatatt
       61 ttaaacaaac aaaaacacac cagggtaaca atagagtatt gtttttttat gttgaataaa
      121 aactgccagg acagtgcatg tatattttta aacatgctgc ttcaaaaagc aggatgcaag
      181 ggatgttgca tctttaattt ttctgttaat tatggattga gcattgttgt gagccttgtc
      241 ctcaaaaccc agctcagaaa ataagagcag atgctcatac ccaggtttgg ctcatgtggg
      301 aattgaacag aacatattgg tttataatta atgtaatttg ttggattatc ttttgtgaag
      361 gagctaaggt aaacaacctt gcagcattgt agtgaaattc ttctgcgctc agagcctcta
      421 tacttgatgg aagatgaccc tacccttcct cctggattgt gggaagattt ggaaatgtct
      481 gtcacattca aacatatttt aattaactca aaggaaagaa ttaggctaca gaccctaaag
      541 caaattacaa atagtgttta aaatcagagc taatgattcc ccaattgact attctgatta
      601 acaaaattct cttttctagt ttgctgtaat tttgttatgg ggcaaggatg gagaaagaac
      661 gagcttttct gccctgaaaa tg
//
LOCUS       KCOD01001687             965 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 188211pyr ultra-conserved element
            locus uce-783, sequence.
ACCESSION   KCOD01001687
VERSION     KCOD01001687.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 965)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 965)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..965
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="188211pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>965
                     /note="ultra-conserved element locus uce-783"
BASE COUNT          288 a          181 c          202 g          294 t
ORIGIN      
        1 acctcagaaa gactatttgg aaaggttttc atcaaagtga ttttctgcag atagctcata
       61 ggtgatcagg atacccacag cttcagcact tcaaatattt atcatatata tgtttgcttg
      121 aatcttgata agggtgagat ttgggactta tggacactga gataggatgt cacctgagac
      181 attcatctga ttctgaatgc agacagaaag aaagtgccta ggagaggcca ggagagagta
      241 agggatacta ggaatggaca gcccttgttc ctagctctaa tatcccgctg caattatttt
      301 gtggacatcc actccttgcc tgcacaggag atagggctat aagtgtatgt tattttttaa
      361 ttacaagggg gtagaaaaaa tcctgatgat gggctggaag gtgccattgc attgttattt
      421 ttttctctcc cttcgtttgc tgattatgtg agctgggctc ctttgctagc cgatgataag
      481 cagaatttcc atgttctctg cataattaat ccatctctgc ctctcttcat gccaactcgc
      541 ccgttatcgc cggcacatgc ctgaattgca aaagaatccg ctcttcaatt ggaacttatt
      601 gatattctaa gaaaaaaaag agggggaaaa aactgaaaat ccttaagttt aagctgcaga
      661 tttttaaatg gattaatttc gctgcaatcg cagccatcta aggcgggaag gcaggcagag
      721 caaattgaaa gcatctccat gtttgcagaa ttgggtccag aatgctgaaa tatactggca
      781 cagttctctt ttaaagtcag aaaattacca ttcatttaca tcacatgaaa tactttttta
      841 tgctagaaat attcaagaga cgttccttaa atgcctgcta atgctagata acatttctaa
      901 ctttcaacat tttgctagac tttgatatga catgatagga atgcctgcca gtggggaata
      961 ttata
//
LOCUS       KCOD01001688             871 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 188320pyr ultra-conserved element
            locus uce-1660, sequence.
ACCESSION   KCOD01001688
VERSION     KCOD01001688.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 871)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 871)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..871
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="188320pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>871
                     /note="ultra-conserved element locus uce-1660"
BASE COUNT          274 a          157 c          135 g          305 t
ORIGIN      
        1 atctgagtta taaacccctg aaaaacagga tttataatgg aaatgctgac acaaccttaa
       61 ccatagcact gctatctggt gctgctataa tatactgtat gaagaaatca gttcattagt
      121 tagttataaa caaaggacag agatagtaaa ttacagtagg tattttctat atatttatga
      181 cacaaaaata tgcagctgca ttttatttct ttagacagta tttaaggatt tcagatttaa
      241 tacacttagt ttggttatgc acattgtgca ttttggtctt gctgttccct cttgtagttt
      301 tattcatggt attttcttct ttctctgttg ctcattagaa aaatgttaaa aatccatttt
      361 catctgatta ataataaagc tgatcacatg taacctaatt ttcattcact gctgcccctg
      421 tctgtggagt catatacaaa gtgacctttg aatcaccact gggcccataa agcacaataa
      481 gcaccattgt cctgtcaaaa attgaagatg ttttacatca ttacaaaatt taatgttcca
      541 tcttttcaaa tgcactactt ttcaaaggcc acattccaat tgaagctcat taaaatcaga
      601 ctcaagtttc ctgtggtggg gatgagaaag agtttctcat gcattcggag taatatgaat
      661 cactctttta aaacagatat ggttacatat tagttttgaa aggtacagta actgctgagc
      721 ctccactgtc tgcaacagtg aggcttttgt acttataaat ctaataactg cctcctgatc
      781 ccttgtactt catccacact gtatcctatt tacttatgaa taaatcaact ttctaaataa
      841 aattgttgtt caaaagttca ggggttgaat t
//
LOCUS       KCOD01001689             517 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 188427pyr ultra-conserved element
            locus uce-5617, sequence.
ACCESSION   KCOD01001689
VERSION     KCOD01001689.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 517)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 517)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..517
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="188427pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>517
                     /note="ultra-conserved element locus uce-5617"
BASE COUNT          182 a           83 c          114 g          138 t
ORIGIN      
        1 agcctctggt atcatgtttt ttttccctca aaaacatcac tctgttccca agacttttta
       61 aaggagacag gaaacgggtt ctttttatgt atcaaattta acatctactg tatctatgga
      121 taagaggttc tgaggtgaac tgctgagtgt gtcacagtaa gcctggcaga gttaagtgtg
      181 gaaagtccgt ctgagcacat gctgtaatgg atttgacctc gaagagcact gcaaagagaa
      241 attgcagata accatctgaa ctgacttcag aagccagtag ccctgactcc ctggatacca
      301 agagtaaaag gaaggactaa atagatggag tgaacaatca gaaatacaag gttgaataaa
      361 tgcttaatat ttgaagtgtt gacagtagaa aagcagtaca tttccctgcg tgattgcaac
      421 tatgttagga taaaattcct taagaaaaag taagatatat attcagtaga agtgagaata
      481 caggaacaat aaagacatgc aggtgggaaa atattaa
//
LOCUS       KCOD01001690             589 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 188533pyr ultra-conserved element
            locus uce-7886, sequence.
ACCESSION   KCOD01001690
VERSION     KCOD01001690.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 589)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 589)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..589
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="188533pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>589
                     /note="ultra-conserved element locus uce-7886"
BASE COUNT          196 a           95 c           89 g          209 t
ORIGIN      
        1 agtctttata atagagtatt acatggctgg agtgaaactg agtcttcaaa gaacatgtta
       61 ataggatgca ataatggtaa cgtgttttga tgggtttgga accaagactt ggggaagtgg
      121 tttgcttttc ctgcaatcca ggttctactt tatcttgaca acgctgtgta aaacaaagac
      181 atagctttta aaactgtcta actaatatga tgattgtcaa tcacttaaaa aactccactg
      241 tagcataaac acatactgta tacagctttt attctgaatt agaataattg aatcaatgac
      301 agtgatttgc caggatgtca aatctatcca tcatatcctg tcactaccag tttatttttt
      361 gtgatcaaaa tcaaaaagac tactattttg tcatcagcta tttcattagt agtaacaatc
      421 aggttttctc ttccatattt tttagatatg cctgttatat tttttatttc taaagacaca
      481 aatccttttt aaatcttttc aaaataaagt ttcagaactg aactgtcaga ttagtgaagg
      541 aaaaagacat ctactttcct atgccaacat atttaaaata ttatcattg
//
LOCUS       KCOD01001691             551 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 188640pyr ultra-conserved element
            locus uce-2534, sequence.
ACCESSION   KCOD01001691
VERSION     KCOD01001691.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 551)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 551)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..551
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="188640pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>551
                     /note="ultra-conserved element locus uce-2534"
BASE COUNT          153 a          100 c          114 g          184 t
ORIGIN      
        1 taattctctg aacagttgct tcttgaaact tgtttctgtt ctacatacgt cacttatgcg
       61 taaggaaaaa ttctttcctg gttgtttgtc agtgggtttg ttgtagtttc ctcatggtct
      121 ttagtggagg aagtaagtga cagtgatcag tgaaggtgga cagtaagatt tataatgtat
      181 ttgtgctagc tgattgccaa cagaactggc ctttcccagc ggtgctgtac gcatacttgg
      241 aaaatcaata gggattagcc tatgaccccc ttcacatact tatactgtgg tctgcattgc
      301 ttaccaatat ttcatctgtt tcacttaaat gctggtactt actcaataat gtgtggctgt
      361 tcttgcaagc tactaattaa tttttaaaat gcagtatcac ttgaaacgga gataaagcac
      421 accttcagca tcagagggag agcagggcag cggctttgtg aatttgcact tggtcctact
      481 ttgaaagtta tatattcaga ttaaaaagta ctaaatcaag tacagaaacc tttttgccag
      541 caagctaaat t
//
LOCUS       KCOD01001692             226 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 188746pyr ultra-conserved element
            locus uce-4875, sequence.
ACCESSION   KCOD01001692
VERSION     KCOD01001692.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 226)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 226)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..226
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="188746pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>226
                     /note="ultra-conserved element locus uce-4875"
BASE COUNT           53 a           62 c           59 g           52 t
ORIGIN      
        1 cccctgctct gggagccaag gttggagctt attgcccagg gaaagcgacc ttcaggcttc
       61 cccaagcatg acagatttga ctataaatct ccagattaat gcccaggttc ccaaggtctg
      121 tcatcctgct tggcacgtga gctgctccaa aacaacatgc aggctcatca gtcattggga
      181 ggctgcaggg gacaacatcc tcacctgagg agccttatgt tgtggg
//
LOCUS       KCOD01001693             400 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 188848pyr ultra-conserved element
            locus uce-6418, sequence.
ACCESSION   KCOD01001693
VERSION     KCOD01001693.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 400)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 400)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..400
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="188848pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>400
                     /note="ultra-conserved element locus uce-6418"
BASE COUNT          132 a           64 c           71 g          133 t
ORIGIN      
        1 catacagatg tctgcagaag ggttattgct gacaggtttt tccaatgtgt caaataatct
       61 ttgtataatt tataaatgat aagaaagcaa tcaggccaca ttcataaaag cccagtgaca
      121 cataatttag ctgaatctga ggattacaat taattgtctc tctttgttcc aagttctaaa
      181 tcttagtaaa tgattcactg catgtcatta cagcttaata tttgcatgaa atcacagttt
      241 aactggcata atttaacagc aattaaaaag ctatttaatc ctcatgcaaa ttggcatgag
      301 gggccttgag catgaagtgt gtttgagggt tcaagaggac agtctttaag acacctctaa
      361 cataattgat aatgttttcc ttttcattga aatgtgaatg
//
LOCUS       KCOD01001694             584 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 188954pyr ultra-conserved element
            locus uce-1650, sequence.
ACCESSION   KCOD01001694
VERSION     KCOD01001694.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 584)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="188954pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>584
                     /note="ultra-conserved element locus uce-1650"
BASE COUNT          148 a          153 c          128 g          155 t
ORIGIN      
        1 cggggcgggg tagcggcgcc ttttctcccc ggcggctcgg agaggtgggc cggggctttc
       61 agaggggctg acagatctga agttttggag gctgaatgaa agaaacactc agctaacaaa
      121 acagtgcgcc acagaagaag tttcatctgg tctggccaaa tccctccttt ctttccatct
      181 tttctctcct aataacagct gccctctcat tccctgttac tccgctgtga agaacaaaac
      241 ctccctctga ctatctgttt ttcttttctt ccccagagta ggtctcatta ctggtgatta
      301 gcagatgatt aaaaccaatt cagcttcccc cagtagatat tttctccctg tttgtgacta
      361 acgcgtcagt cttcaatgaa cgtgctccta agcttattaa cgggctcaga ggattagctg
      421 ccaccgagcg ccgccgctcc gatattgtga tgcagcgagt gacatggaac catttgctga
      481 gcacaggcag ggccgctggg accaaatatc taaatcacaa tttaaatccc cacaataatt
      541 aaaaaatcaa acgtttggcc aagtctgaaa atagccttaa actt
//
LOCUS       KCOD01001695             665 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 189064pyr ultra-conserved element
            locus uce-1063, sequence.
ACCESSION   KCOD01001695
VERSION     KCOD01001695.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 665)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 665)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="189064pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>665
                     /note="ultra-conserved element locus uce-1063"
BASE COUNT          182 a          131 c          153 g          199 t
ORIGIN      
        1 ggaaaggagc atctgggacc catcatgcct attagtggtg ctgctcggtg gctctttggt
       61 gtgagactct ttggcctgtc ctgggcagga gctgggcgct gctcgtggtc catcattgcg
      121 cctgacctgc tattaattgg aagtagcgga attaaaattt tccattcttt tgcattgtca
      181 tgcctcacgt tgataagcac aaagaaatgt aaataaaaaa gacctatttc acaaccctag
      241 ctacaacctt tttgttttat gacaaaagac agttaattag catactagca gtaagcagcc
      301 ttcccaaact cgtgctaatt atgtattctg ttgaccgtga ctccagtcat aaggtaattg
      361 gcttgcagca acatgacatt tcaaatcatc tcttgaaatt acatcaaaaa gccagcctgt
      421 tttgttttga taggggaaca atcaatttga taagtggtaa cacagctcat tgtttcacat
      481 taattagact aattgcagca tgttagcctc tgaaatagac agaacttgga gaagacaaag
      541 gctgtggcct ttagcatgca gtgcatgtgg tggttccact tgcttgcaca tactgtaggc
      601 agaaaacaga gttgttagga ttcagccttg cgggagactg ggtgttaaca gtggtttgat
      661 gtgtt
//
LOCUS       KCOD01001696             806 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 189174pyr ultra-conserved element
            locus uce-5438, sequence.
ACCESSION   KCOD01001696
VERSION     KCOD01001696.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 806)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 806)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..806
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="189174pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>806
                     /note="ultra-conserved element locus uce-5438"
BASE COUNT          235 a          179 c          157 g          235 t
ORIGIN      
        1 agacttcatt catacagaag caacattgcc tctccctgca aaacagacac gagcatcgca
       61 ttgaactggt gccgctcctt gaaatatttt aaaggctgtc aggaagcaga ccagcaaagg
      121 ctattgcctg tccatttccc caggaaaggg agcagcatgg gttcccctgc aggcttggac
      181 ttgtccagaa aaaggacaag tgatcgtcac ctcctcaaac gcttcaaaca ttatagcatg
      241 gattactcag tctcagcaga cttcaaaaag cctttgtcat ccatcagaag tgcttcccta
      301 cgtgccaagt agtgccgttg ttttgtaatg aacaacttcc atcagagcgc acaatttctc
      361 atcctgtctg actctgctga tcattcttgt aattaagtct cctttgattc tctttggcag
      421 cacaccatct gcacaagaag gcacacctgg aaagcagttt tctttttcta cccttggtta
      481 aactctgttt taaagcagag agccttaatc aaaagaagtg cctgagtgga ggtgtctgtg
      541 cctgtctcac ttttgtcaca gattccctct gaagtctgca ggatttggat ttgcataaca
      601 atttccaggt gtccaccata gaggggtaat attttcagtc cagtggtatg aattgtacag
      661 gaaaataaca ggataccata gacatttaat tggtattaat tactataaat tcctatagaa
      721 tcaatcaaaa aaatatttac tatttgtagt attattttag gactcacaag aatctcgttc
      781 ctgagtgagt tcgagaaaat gtgaaa
//
LOCUS       KCOD01001697             725 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 189287pyr ultra-conserved element
            locus uce-7889, sequence.
ACCESSION   KCOD01001697
VERSION     KCOD01001697.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 725)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 725)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..725
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="189287pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>725
                     /note="ultra-conserved element locus uce-7889"
BASE COUNT          197 a          171 c          128 g          229 t
ORIGIN      
        1 ttctgcccct cgccatagct ttgtgcaata atgatggcac tttgattagc aagactctga
       61 acacagaatg ggagcacagt agtcaagcac catttgctat tttcctctca gctgcacaga
      121 catgctgaaa taatgatcct ggcaacatgt tagcaaaaca ttagaaagac tttagtaagc
      181 aaataattta attacatcct ttttttatat tgcacaaccc ctgacctttt atattgctgt
      241 acctaaactc agcatgggat tcacacttcc cattcctgtc acagaatctc tccatcttgt
      301 accatttaat atagtgtgct ccaggtgttc tgtggtgaat gaatagttat attactacct
      361 gtcagacaca atcacactct attcatcatc cacggctggc tgcgtgaagc cctgcttcca
      421 gcaggctccc tctctatttc cttgttcaaa cgtctgcagt gctttcggcc catctgtcaa
      481 gcctgtcatt tagagggaaa acagtatcag cgctttaaat atatggagtt ctctattgaa
      541 acagtgctgt gattgaactg tcagcattcc cagtatcaca gacagtaatt catgactggt
      601 cagagctcca tttaggttgc tattaccacg ctgaccttgc tgggtcatac tgagagattt
      661 ttcccttttc agttaggtct ataaatagtg caattaacct ttcaagaatt acaaaatgtt
      721 ctcag
//
LOCUS       KCOD01001698             344 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 189396pyr ultra-conserved element
            locus uce-2752, sequence.
ACCESSION   KCOD01001698
VERSION     KCOD01001698.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 344)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 344)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..344
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="189396pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>344
                     /note="ultra-conserved element locus uce-2752"
BASE COUNT           88 a           81 c          111 g           64 t
ORIGIN      
        1 ccccggcaag gctgatggat atgcagagta tgttaagaag caagcaatac tgtcacggag
       61 ctgatggtgc tcagtgactc ctcgagcttc tggctggtct gtactgcagg agcttgacac
      121 cctgaccact gaggcataaa aaacagagaa ttggaagcct cagcctgaca ggcactggag
      181 catcccccag agagggtcca cgatgtgtgt ctgtgtgtga gtgtggggag gagggcagtg
      241 gggatggtgg gggaggaggg caagacagga caggatgaaa caatgaaatg tcagcccatt
      301 cccacccacg gccctgctgc agcactgata aatgcactgc tgcc
//
LOCUS       KCOD01001699             737 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 189503pyr ultra-conserved element
            locus uce-55, sequence.
ACCESSION   KCOD01001699
VERSION     KCOD01001699.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 737)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 737)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..737
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="189503pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>737
                     /note="ultra-conserved element locus uce-55"
BASE COUNT          242 a          154 c          127 g          214 t
ORIGIN      
        1 tagaacaact agttcccatt agcatgaatg acagtggtgc tcttgcaaat cccatgtatg
       61 gtgatggaat atggactctg aaatctctgt gaccttgatg tgcaatattt atgtctacac
      121 ctttagcctc ttgtgcataa tgagatgcaa tcttttagct ttatgcactt caccaggcat
      181 tcaagtagaa atagcaaggg gaagaatgct aagctactta gacagaaggt agtgaatcaa
      241 aaattgcaaa acttgagctt tcaaaaatag cctgagtgac ctcttccaat actctgacca
      301 ctccatcaca agcaggaggc aacccctgtg aagagcgaat tctggcaaag ttctctcttc
      361 acagatgatg cacagcttaa gctataatga gtttttgggt tacaaatgct gaacgcatta
      421 atattccttg atgataatta tcacagtata agcacctttc ccaatgtgag tagcataaag
      481 caactgaagc agcattttta ctacatttga aacaagctgg aaaatgggat tttctactct
      541 tgtaacctga ggtcaagata catcaagcta tgcatattaa gtatgtctac cctatataac
      601 tatataggcc ttcccatata ttcacacaca tgcatgcaat taacacccta acaaatatgc
      661 catgcatatg aacatgattt cccaagtttt aaagcagacc caaataattt tcaaacaggc
      721 tacactgata tttcttc
//
LOCUS       KCOD01001700             588 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 189612pyr ultra-conserved element
            locus uce-462, sequence.
ACCESSION   KCOD01001700
VERSION     KCOD01001700.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 588)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 588)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..588
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="189612pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>588
                     /note="ultra-conserved element locus uce-462"
BASE COUNT          164 a          100 c          125 g          199 t
ORIGIN      
        1 aagttgtagc ctcactttaa tctgttttat gtagcaattc atgtgtttag gaagtatagt
       61 tgggttaaat cagaaatccc tctcaaccat gtgaggttca gttttcttga ggtgtaacag
      121 tgttcctttc tcttttgcag ctatgttcat tagaaataaa ttcacattgg gttcatatcc
      181 atataccctt cgtggtgaac aaatattttg tgtctactta atttctgact acaaagttgt
      241 gataatatta gatttgggct tgctgtgcat aaagtgtgtc aaacttcagc tacagaccag
      301 ggggtgaagt tggtcaattt aattcgccaa gatctaaaga aggtcggtat catttcatat
      361 agccctggca gagcagatca ttaccagaca caaatctgtt cgttacatgc cgagggttta
      421 tagcaaaata aatagactgt catcataagt tcagaaaatt gtgtgttcga cccacgataa
      481 tgtgtaaagg gcgtttaata gagttcagca tttattcgtt atctatatgc ggacagagac
      541 ggcggaggcg ttatcagctt ttttcggtag ttttctgtgt cacatgac
//
LOCUS       KCOD01001701             740 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 189717pyr ultra-conserved element
            locus uce-2210, sequence.
ACCESSION   KCOD01001701
VERSION     KCOD01001701.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 740)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 740)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..740
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="189717pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>740
                     /note="ultra-conserved element locus uce-2210"
BASE COUNT          231 a          134 c          142 g          233 t
ORIGIN      
        1 aagagatgct aaaaatccag ctgctggctc tctaacagag caaagttcat atcccagccc
       61 ctggtggttt tatttttcca attttagtgt aggaaataga agtaggtttg ggggccttaa
      121 atagaaaggg taggagaagc agttatcatc aagctttagc tttgaaatgt aaacttagcg
      181 aagacttccc tgatgaagta tacatatgga actgcaaaac tttttatcca tttgttttcc
      241 tgaccataac cacgttttca cactgtcagc atttttatta gaagctcttt ttgtcagagg
      301 tttataacga gaatgtaaag atttgctatg ggctaaatct caatccaaga gcaaatgttt
      361 ataccaattc tgaaaacaat cagcttgccc atttgtagtt atgcatgtgt tcatcatctg
      421 ttactgcttg tccaatgctc tgcaacttct ggaaggaaaa agagacatct ggagggaaaa
      481 aaaaagctat cctgcagata gcacactgta tgttctcctg agttactgaa taaggtacta
      541 cagaaatgca gttttcagtc aatacaaata ctgtcaaatt taatgagaaa tattgtaatg
      601 tatggctcag cctggtctcc cattacttgc atggaatttg cttaaaaaat cactggaaat
      661 tattcaccta gtgaactgag ccatttttgc caggcacgaa aattctttga aaatgtttta
      721 gcttatcttc tggacctgag
//
LOCUS       KCOD01001702             703 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 189828pyr ultra-conserved element
            locus uce-2366, sequence.
ACCESSION   KCOD01001702
VERSION     KCOD01001702.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 703)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 703)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..703
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="189828pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>703
                     /note="ultra-conserved element locus uce-2366"
BASE COUNT          216 a          131 c          123 g          233 t
ORIGIN      
        1 tatctctatt acttagcttt tattgccatc tcaatacatc ccaggagctc aatagctttt
       61 tgccagtgca acaatcctga agcaagcacc gtataaaaca acatagaagg cctttaaaat
      121 aacttacata tgatagcatt cctcataata ctgtatgaaa aaacatgtct tatttgtatg
      181 atgtttacat atacaacaac atgattaact gcaaacttgt ctctcatgta taagagtgtg
      241 cacctcctac catcatatcc tttgggggaa atatccctgg attgcacctt gggagctatg
      301 gctctcttgc cataggcatg gttgtcataa ctgttatatt caaacgaagt cttagagtat
      361 ttctctagtt ccttggccaa gttggagcgg ggtgtggtgg tggggacatt gtttctgtag
      421 ccatactgag ggatctccaa ttgcttaaca aagcacatgg gcctagaaat taaagatatg
      481 tacagtttgt tagatgcagt tcagtttact atgtctgtgc ataatttata gttcagatta
      541 gaaaatctta gttatttctt gtactcaaga gacagcaatt attattgcat ttccttagtt
      601 tggttatttt cagcagacaa acaatatctt gaacaaagcc tagacaaaat taattctaat
      661 accactaaat gtatcctgca gctaaaagta ttttaaaatt ctg
//
LOCUS       KCOD01001703             750 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 189936pyr ultra-conserved element
            locus uce-6248, sequence.
ACCESSION   KCOD01001703
VERSION     KCOD01001703.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 750)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 750)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..750
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="189936pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>750
                     /note="ultra-conserved element locus uce-6248"
BASE COUNT          223 a          149 c          128 g          250 t
ORIGIN      
        1 gtaaattcaa ttaatttatt tctgtaaact ggatcttact gtatgaatag aagataaagg
       61 ttttaaggct tttggtccac tctgctaatt acagtgtttc atatatttgt tgccaaagac
      121 cattttgaaa tcacttatta tctaggaaag ttgcctaaat cttcctcact ccgttagcaa
      181 atgtcatatg tacagatagc cagaggactt aatggtcacc atagacagct gccagcacgc
      241 tgcggccagc gaggccattt gtaattctca ttaacagttc taccattttt ggttgtatga
      301 aaagtgataa cacactgatc taacagtcat taagaacttt ttcttactcc tttaggatta
      361 atttgcactg acccagaatt ctctatttgc ttaacacaag cagtgggcca ctttgatgtt
      421 atctgcttct ataaacaata gcgtacagtt ctctcctggg ctaaaacagc tcttactcta
      481 ctgagaatta gctatattaa tcattctgaa gtccaagagt gcatgatcat aaattgtgtg
      541 cagggacctc acttagcaac tcccaagact ctcatttatc aacacccttc ctggatattt
      601 agtatgtagg gagtaattta tttctgagcc ggtgccttgt gatgtctttc atgttgaagt
      661 aaagttggaa aactttccgc aacaaatata atttttctta cttccttagt gtaaaagcaa
      721 aaattatgga ccacagctac agaatgattc
//
LOCUS       KCOD01001704             666 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 190048pyr ultra-conserved element
            locus uce-5606, sequence.
ACCESSION   KCOD01001704
VERSION     KCOD01001704.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 666)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 666)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..666
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="190048pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>666
                     /note="ultra-conserved element locus uce-5606"
BASE COUNT          165 a          121 c          169 g          211 t
ORIGIN      
        1 attccaactg ttttactcga attggctgaa gaaaatccct agtgagtatt tgctcctcga
       61 caccgacatt aaattgtatt ttaattgctg tcagtcagga ttgttccggt ttagaatacc
      121 aacactgtgg tattgctgtg taaatgtctc agtgttccgc tgtggtcgag acgagctggg
      181 gatgttggga tgtaacttgt ctcttctggg ggttttatct tgccttttcg tgtgtctttc
      241 tgtagacata tctgaagaga tggattaaga atgctttgga ttaaaggatt gtggagcaca
      301 tgtcaatcat tttaggattg tcaaaaggag gattgaggag gatcagatca ataatggagg
      361 caatggtatg actccaagtg ctattgtcac agatgaactt ggcagtattg accttatact
      421 gagagacagg ggaattgagg ccgagcacta cgtgtcccca tgttctcgtg accgcaggct
      481 gcgattgctc ttctctttta aaaggggggg caattgtggc caaataaccg gggcctttgt
      541 cccacagcgt ttggttacaa gtgttatccg tacacttgta gtagaacttg caatcagagt
      601 ataatatcaa tactgctaaa atctgcatgt cctctgtgtg actgatacag cgtggctgtt
      661 gcattt
//
LOCUS       KCOD01001705             760 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 190161pyr ultra-conserved element
            locus uce-3862, sequence.
ACCESSION   KCOD01001705
VERSION     KCOD01001705.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 760)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 760)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..760
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="190161pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>760
                     /note="ultra-conserved element locus uce-3862"
BASE COUNT          265 a          146 c          130 g          219 t
ORIGIN      
        1 tcataaaaca aatcaagcct cgtataaact tgtgtactga caaacacatt aaaacaacag
       61 aatccctctt taaaggagat tcagtgcaac tcgacttcta atttgaaaat agcaattttg
      121 gctcttttta cagacaggat gaaataccta aagtgtccct aaattaataa gtaccacttg
      181 ccatagacag catcgccctt agcagctcct aaaaacttca gaaaaggatc ttaaaacagg
      241 aagcttagtg agctcataaa actgttgttg gagccaggaa cacatagcat atttaatctg
      301 caaactgtga gagtctacaa tgatttcagc aagatctgag gcatgccctc aaggtttgct
      361 gggatctggg attagggagt tgataagaac cctctactgc ccatggacat gtttttcttc
      421 tgcagttaaa cacaaatgca tagagacgtt tgactgctgc ttggcgttac tgctcaagtt
      481 atataaaagc tttgcagctc cttttgctgt caatatatca aagtttaaaa aaaatcatca
      541 aagtgtgaaa tttcatttaa agtctgccag tctacagctc tatttcacag acctatcaaa
      601 taaaagtaaa gatgaaaaat gcactgaaag aacttgaaaa gtttgcagca gcacccatgc
      661 cctatttttg tttattctgt ctcatttttt aaagtataac aaatcaattc ccttataaaa
      721 atgacaaagg aggatgtcta taaaacctgt ggttaaaaga
//
LOCUS       KCOD01001706             695 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 190269pyr ultra-conserved element
            locus uce-3655, sequence.
ACCESSION   KCOD01001706
VERSION     KCOD01001706.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 695)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 695)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..695
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="190269pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>695
                     /note="ultra-conserved element locus uce-3655"
BASE COUNT          194 a          142 c          171 g          188 t
ORIGIN      
        1 tcacctccat caaccttaac ttccttagtc acaatgcaaa cagctctacg tggttttatt
       61 tcatcattta ctgagacaat atcctaaaca cttctggaca gcagctgtgg gtggaaaata
      121 tataggatgg tgaagcttgt gaagtgtgca agaaaaatag tgctagttaa acatgcctga
      181 agattgggaa tcccagggca ttcatgtgct tcggctcaga aaagggaggg atgctgcatt
      241 tcacaacaga ataaaaataa ttgctttggg gacccaagtt aaaatgcagg tgttttgagg
      301 ggaacataaa cattttttcc taaatgaggc gttgagggct gggagaaggg cagtaaaatt
      361 agtggaatta ctgcctgatt ttaaccagat gattgctgca gttggacacc agcgcggttt
      421 cattagggac tctaatttac aagccattca ccgcattcca ggggaatgca gcaactcccc
      481 cccacgctcc caaagaatgc cagcactgag ctttagggca gcaaatttgg ggcttttttt
      541 gtcattgttt tgtggcttgc ttttaaaggc cagcttggct gtagcgctgc ggccaagcct
      601 tttgggaagg gaaagagagt cactagtccc aggaatctgt gtaaatctcc actggcgtgg
      661 aaaacatatg gtccttctac taaagagctg tcctg
//
LOCUS       KCOD01001707             524 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 190378pyr ultra-conserved element
            locus uce-7988, sequence.
ACCESSION   KCOD01001707
VERSION     KCOD01001707.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 524)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 524)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..524
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="190378pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>524
                     /note="ultra-conserved element locus uce-7988"
BASE COUNT          170 a           90 c           91 g          173 t
ORIGIN      
        1 aaaagaaatt tccaaatacc tgaactttca aatttgagac caaataaaaa actggcagca
       61 ttattagaat tctcttgtgg gcagcgctat gttctgttca tcaatctgct gtacccattt
      121 tcttagccct cactgggaaa ttaaataatc ctgactgaca actgacacat taattgcctt
      181 tgagggagcg cacctttaaa aagcagtaat ttaaagtctt ctgctttggt ggaagaacca
      241 atttgcagca tcatcagtca gggttttgac atgtaacttt gcacttgcca ttttgttaat
      301 aaagaatcac acttgaatcc tgagagagtg tttccctaaa gagaaactta gatgtctttg
      361 tgaaattaag atgactttga tagggacatg taatgaatgt ttaaatgagt tattaacctt
      421 tcatgacttc agtgagtgtt actgcaagac aattcatcat tatattgtca taaactgaaa
      481 aaggtgaata tcacagtaag atccatttct ttaagtttat ttct
//
LOCUS       KCOD01001708             725 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 190488pyr ultra-conserved element
            locus uce-3991, sequence.
ACCESSION   KCOD01001708
VERSION     KCOD01001708.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 725)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 725)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..725
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="190488pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>725
                     /note="ultra-conserved element locus uce-3991"
BASE COUNT          237 a          141 c          143 g          204 t
ORIGIN      
        1 acctttgtgc gggggcaggt ggggaaaaac acattaaaac agtacaggct gttactccgt
       61 atgtgtttgc aggacgataa taaatgtttt taatctatga aacatctggg aaaaatccaa
      121 tttatacaag atggaatagg catagcatag cttctacaat ataaatctgc acaaaactaa
      181 cagcatgggt ctatccttta ggctttttct aggagtataa aatatgcaga atcctaccag
      241 gccatattgc catgggctgt gttgtcaagg tgacagagta gctccagggt ttgagtgttg
      301 cttgatgaat catcagggga ttcatgactg cctgattcca attccttcgg catcctccaa
      361 acagcagcac atgtcatgac tttagtgtct gaagctaagc aacagagaat aatgtcaaca
      421 gatcattgta tgggagacgt attttgtata cactgcacca acatttacac aaatctataa
      481 gcaatgcaca tctgctgttt gaaatattta aaaatattat accaagatga attcaaagaa
      541 tgcagaatgt ggctacagac acagacctca agttagcagt tgctgcaaaa ctcaaattag
      601 cacacattta atatgtgtct ccctgaacaa aagcaaaatt aagtgctcgg gaggcatgtt
      661 ttccaagttt cattccccat actgatgtta atgaaaatga cccacaagtt accttgcttg
      721 attcc
//
LOCUS       KCOD01001709             571 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 190696pyr ultra-conserved element
            locus uce-6118, sequence.
ACCESSION   KCOD01001709
VERSION     KCOD01001709.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 571)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 571)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="190696pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>571
                     /note="ultra-conserved element locus uce-6118"
BASE COUNT          160 a          111 c           93 g          207 t
ORIGIN      
        1 tgtagatgta gtcctgttgc cagaaataac actttatatt agggatgggt ctgaagcata
       61 gaaatgtctt gctcgcatca gtggcttctg attcctgctt aatttttgat ctgattaaaa
      121 caggattatt tggttactat ctgatttcgg taggtttatt taccagttct tctttgcgtg
      181 cccttcattg tccttgatta tttctacatt gtattgtcta acgaaagaaa aaaagtttca
      241 gtatgtattt ttcccatctg gttagtccag cactcttctt aattagtaaa atgccatcct
      301 gtcagattct ctcctgccag gaagtcattc agctccgaaa tcacttcttc acctccatca
      361 tatattttaa catttggcaa aagtcttatt cttccttaaa atcaaccaca gcaatgctaa
      421 ttaagtgtag tttaggatta atttgtatta aaacaaggcc tcttgggatt tcaggacatg
      481 tactcagagt gtcataaaat atgtaatagc acttctcaat taatattcat tcatttggga
      541 acaatgaaaa gcagccttac tctttcccca g
//
LOCUS       KCOD01001710             777 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 190808pyr ultra-conserved element
            locus uce-3159, sequence.
ACCESSION   KCOD01001710
VERSION     KCOD01001710.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 777)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 777)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..777
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="190808pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>777
                     /note="ultra-conserved element locus uce-3159"
BASE COUNT          243 a          142 c          143 g          249 t
ORIGIN      
        1 tagtcctggc cactgttttc caagtgtgac cactggcata gaaaccagta caaccttaag
       61 cttccaggga gagctatgcg cttcctgaag cctgccttag aacaccacca tgaaagggat
      121 gatgatgaaa tatcagctat catgtaacta tctataaatg ttagatttct acaaagtgat
      181 tccactgaat tgtaattaag ggtttgaaag tcgaatgatt ttaagtgcta gttttaatta
      241 ccgcttggtg aacttcagtg tgttagaatt gtcacaactt tcctttagaa ttagtgtcaa
      301 gccaggcaat acagtgggaa attattaact catactttgg ttcagcaatt atctgcatta
      361 caaggtttat gcaattagct gtttaagatg tcattatatt ttgccatctg gtacacagga
      421 gtttatgcat atgaacaggc acatgttgaa gtgattttca ctatatgaca cttgatctca
      481 acccaaatca tcactataat gagtggaaga cacagtgtac agtacattag tggcaggtgc
      541 atactatcaa cttcatttta atagaagact ttcatgtttc catttttaaa gtattctgca
      601 caagtgctga agaattaatt gctcgtttgc aatttagcaa aaaacgagga tacgttattg
      661 ctaaatgcta atcagctttc aggaaagcgg ccacttattt aagttctttc catctgtaac
      721 tccaggccaa tttctgctgc agacaataag aaagtctcag ttaaattcat cttaaaa
//
LOCUS       KCOD01001711             645 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 190920pyr ultra-conserved element
            locus uce-2563, sequence.
ACCESSION   KCOD01001711
VERSION     KCOD01001711.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 645)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 645)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..645
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="190920pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>645
                     /note="ultra-conserved element locus uce-2563"
BASE COUNT          204 a          109 c          134 g          198 t
ORIGIN      
        1 tccttaatag gtttaaatct cagtcaggga gaaaagtatg tgtttttaac taataccatg
       61 tcatctctta atcatgctga ttctgaataa ttcacccact gtggaagttg cagggcgaga
      121 atctatagct ctatctctca ctgggggtag tttattatta ctgagtctga cagcagaaag
      181 ccctggcagg ttaattgctg cagcaagact agctgggagt ttgctgttga tatatagtga
      241 ctaaagggag tgaaggagat tgactgtgcc tgttacagca caaatatctt catgcgcctc
      301 aggttcctca caaagatatg agaaataaat gttcgctctt cattttctgt ctgcacaata
      361 caaatagcct tgggctgaac atggcaacca cagcatacag aatacatatg aggaaatttg
      421 caaattaaca ttattacaaa cattcctgcc tgaaagtgct gaaaatcaat ttcaatatag
      481 tttgcatttt aatgaggtgc caaagagata aatcagttgt gtttgaggaa cacttggctg
      541 gcaatgatgt tttctgatca tatcatgtct taactaatat tagattaagt aaaaccactg
      601 ttaattgaag gcatgggaaa tgttgctgct agttaatgaa gtaaa
//
LOCUS       KCOD01001712             663 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 191031pyr ultra-conserved element
            locus uce-4160, sequence.
ACCESSION   KCOD01001712
VERSION     KCOD01001712.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 663)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 663)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="191031pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>663
                     /note="ultra-conserved element locus uce-4160"
BASE COUNT          219 a          146 c          115 g          183 t
ORIGIN      
        1 tctcaaataa ataagagcca tggaaggaaa aaactgcagc tacaaagtag ttctaaccca
       61 ttaaatgcag atggcccaca gggggtttaa tcataagaga gggaacacac atcatgctga
      121 aatatagagc tgttttctat cacttgttac catttgaatg tctgtcccag gaaagtgaat
      181 tcaatatatc ttcctggcca tcagttgccc tctgaatact ccttctctct ctgatgtagc
      241 tagatttccc tttagaacat acagagatga atgagctctt accacacgta gaagtgaaag
      301 aaaacatttc tttctgcacc agaacagatg agattcatca ttaagagaat ggatttgacc
      361 ttgtcaagtg gaccaaagca atttataaac aaactcctac aggggaggct acttttggcc
      421 aagtactata ttagcagtgt tttacttatg cccactgcta ccttacaata acttcacaaa
      481 caggctgact tcctgaaata tagagtgctg agagaaatca cagatgtacc tagaaacact
      541 gggatagcat attccctccc tagaggctgc acagaaacat gtccacccac cttactttct
      601 cattcttggc aaaagttgct gatcactacc caaattaaat cttcatttca aatatgtatc
      661 aaa
//
LOCUS       KCOD01001713             532 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 191140pyr ultra-conserved element
            locus uce-5977, sequence.
ACCESSION   KCOD01001713
VERSION     KCOD01001713.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 532)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 532)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="191140pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>532
                     /note="ultra-conserved element locus uce-5977"
BASE COUNT          182 a          102 c           82 g          166 t
ORIGIN      
        1 aaacacaact ggaaatgggt gtttgaaaac cgatatcaca cctgatttta attaaactaa
       61 agccaggatc ccataacata taatttcctg tttgtggaac tacttctaat caggccaggc
      121 tgctttgcaa catacgcaat gcagaaggga gtgctatcat aacacttcaa tagttaagtg
      181 actttatgag aaaaatactt ccaaatgttt cctaaaacct tccaaaccgc accaaagaac
      241 attatcgtaa tattatgttt ccccatggcc tccaatattt aggcttgcta ttctcgaaat
      301 gatacttgga tgaaaaatat aagtttatgt aatgtataaa ttgttcctag aagtaaagtt
      361 gcctttaaaa ttactctgta tagatgtcag atattttaca ttttcaatag tctttctata
      421 ttaattggag aaacggccgg gaataatctg tatttcagaa ctgagcagtc accctgtgat
      481 cttattccta gcaaacactg aaaacaataa ctgtcctaac cgattacata tc
//
LOCUS       KCOD01001714             562 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 191245pyr ultra-conserved element
            locus uce-2923, sequence.
ACCESSION   KCOD01001714
VERSION     KCOD01001714.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 562)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 562)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..562
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="191245pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>562
                     /note="ultra-conserved element locus uce-2923"
BASE COUNT          130 a          115 c          168 g          149 t
ORIGIN      
        1 ttgtttgacg ggggtagggg ctggcttttt ttgacagtag tactgttggc attgacagga
       61 gatgactgga atgagttgga aagaaagatg ccatctgaaa ctgggcgagg ctggcgggag
      121 ggctgctgtg gcttaagggt ggcaggagga aagtcaccat aagattttct tgtgctggag
      181 tacttatcct gacctgctag attggaatcc tcctcctcat catcatcatc attgtatgca
      241 acaaacttgg cagtataaat cgtgtcaggg gagaggacct gtgttttgag gtaagaggtg
      301 tttcgctgag gtgggggagg aggagcgtta gatgaagggg ttggggatgg gagttcatat
      361 tcccgtggaa gcggaggtct gtacagacca ggctcgtcag gttccagcaa tcttcgttca
      421 gcttcatcgt gctgcctgcg cctttcagcc tctaagcgac tgtaatactc ctcttcctgg
      481 cgcctctgaa agcccagagg aaacagaaac acagtggtca catttcaatc tgtgctttcc
      541 accactgagc tacaaacatc tt
//
LOCUS       KCOD01001715             682 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 191352pyr ultra-conserved element
            locus uce-4562, sequence.
ACCESSION   KCOD01001715
VERSION     KCOD01001715.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 682)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 682)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..682
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="191352pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>682
                     /note="ultra-conserved element locus uce-4562"
BASE COUNT          163 a          172 c          169 g          178 t
ORIGIN      
        1 ggttaaagat gggcagtttc cctccccagt aaaggtaatt aatccattta gcagggaaag
       61 aatttgccat tgagcagata gggccggttc aggagagccc ttcagccccc aacaatatcg
      121 cattaccccg gtgcataaag agcgggagcc gtttccgctg gcggggccat aatggaggta
      181 tctctttaca aagcccccac ttcaggccag ctgaatgcct ctgccgagcc tccgaaatcc
      241 cgcagccctt tagcaacaaa gatctgtttc tttgcttagc atgaagtaga cctcagaggc
      301 cggtgtgtgc cttggcctgt aggccaaaag cctcctgttt acaatttccc tattcctgtt
      361 tttaatgttg ttctgagagc agccacaaag ggccggtttt gtccagcagg aacaagggag
      421 ctattagaga gggacggagg aaggaaggaa gggagatcca aaaggagcag cccaggaggg
      481 attagcatac acagctgttc cctcagggac aggagcttta tgctttttat aatttccctc
      541 tcatttacat tttttaatat ctggtttcct tgtttccagc ccatgtctcc aggaccatct
      601 gcccatttta ttggattttt caggcgggcg catccagccc agggtgttca ctggcttctt
      661 aaatcgtgca atccctgctg ac
//
LOCUS       KCOD01001716             861 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 191464pyr ultra-conserved element
            locus uce-2598, sequence.
ACCESSION   KCOD01001716
VERSION     KCOD01001716.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 861)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 861)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..861
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="191464pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>861
                     /note="ultra-conserved element locus uce-2598"
BASE COUNT          282 a          170 c          164 g          245 t
ORIGIN      
        1 aggtcaatgt ttggattggc gaaagtatca cagaacgttg tgtagatgat catcaggagc
       61 acacagctgc tgatagcacc aaatggaggc ttcttccttt caagccagtc cttgatgtat
      121 cttcggacaa tctgaaacac agaaaccaac aggttgcctc ttttcaaaga tgcagggagc
      181 caagttgggc atcacaaagt gaatctgaca gcggaaagac acaaagagaa gagagtcatt
      241 tggatgacgg ccacagtgga tttcaaagct tccctgccac acaactcttc ttctggggaa
      301 tttaacattt gtagtgcaac ttccactggg cgtccataat gagagtatat tttcaagtac
      361 attcaaatcc atccttaatc atgccaaatg ttctttgcta gctgtcactg agacatgccc
      421 attaagcctc cccaaagttt atctcctctg ctgatactaa tggatgtatg taattatcac
      481 agtccccttt gcatcaacag acaattccaa gtgcaacttt gggaatctta aaaatctgac
      541 atcttcagga atttcatgac ggtagataat cgaaagtgat ccatggaaca ttttaatatt
      601 taaatagcta gcgatgcacc agaagttttt aattaaatta taactcaagc ttgaaaagca
      661 aaagtgcatg tgttgtggga gtttaaataa ttcaaactct gaatatctgg agtttttgta
      721 aatccaaaga caaatgccat ttgcacgctt ttagaatacc agaattaaca catgaaaaca
      781 aggaaaccta ctgtacttag cggaactttt gcactttcag gaaacagaat atgaagctat
      841 ttttcaagaa ttttttagaa a
//
LOCUS       KCOD01001717             341 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 191572pyr ultra-conserved element
            locus uce-6256, sequence.
ACCESSION   KCOD01001717
VERSION     KCOD01001717.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 341)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 341)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..341
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="191572pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>341
                     /note="ultra-conserved element locus uce-6256"
BASE COUNT           86 a           94 c           78 g           83 t
ORIGIN      
        1 aaagcagagg gacccctccc caaacatgtg gccagaggag acgcgggcgc cccacacccc
       61 gcgctcgcac ccgtcgcttg ttttttacat ttcgctccta attatgttgc atctattgcc
      121 atacacttaa ttagctgcat taatgtgatt tcttttcaca tagtcaagca attaagagct
      181 atgattgagt ttcattcaat tagcctcaac aaacatgcta attgatgtcc cagatgcaaa
      241 tgaggtgcag tgagagaaac ctgctggggg acccggggct cgcagctcgc tcggcttaac
      301 acggctcctc ccagggcaca gccattagtg gtcccaaaga g
//
LOCUS       KCOD01001718             731 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 191684pyr ultra-conserved element
            locus uce-3166, sequence.
ACCESSION   KCOD01001718
VERSION     KCOD01001718.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 731)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 731)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..731
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="191684pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>731
                     /note="ultra-conserved element locus uce-3166"
BASE COUNT          184 a          163 c          159 g          225 t
ORIGIN      
        1 tcatgcaaac taggaagaga tctgtcaaat atcaaatacg aattttgttg ctgaagctct
       61 tggaaaattg acaggtagca tgcaagcaaa cattaaatca ataacggcga atttccctcg
      121 ggaatcttgt agtgttttct catcaaaatc tttaaatcct taaagaaccc ataaaaggtt
      181 tacacacttt gtgttggtta atctggttac ctctgcatcg ctcagcgcgc acggccggca
      241 aatacccagt gctgatcacc cagcagtgtg tgtaatatcc agtgccctgg cgctgatgta
      301 ttgtagcttt gttagtcact gtggctcctt ggtaaattca tttggagtcc tccggggttt
      361 taaatctctc atttggccaa caacgaggtc tgaaaagatt gcagttcatt tcgacccaca
      421 gtggatggaa ggctcattta ctggctgcag gcaactcaat caggccggcc gctgatgagt
      481 gagtgacttg ttcagaccgc tagtcaatat gtgtctgctg tgatagaatg tcagcatctg
      541 ctgcctgctc ctgtctccca ctgctctggc ttttttcatt tgggctgatc aatgttatta
      601 aaaacaccta ggagttcctt aactgcactg ccacttgagg cttttccttc ttaaacacaa
      661 ctttgtatta tctgcaaaca cgtgcagatg atgcttttta catgagtgtg tgtgtgtctt
      721 gggcacataa c
//
LOCUS       KCOD01001719             630 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 191791pyr ultra-conserved element
            locus uce-2353, sequence.
ACCESSION   KCOD01001719
VERSION     KCOD01001719.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 630)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 630)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..630
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="191791pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>630
                     /note="ultra-conserved element locus uce-2353"
BASE COUNT          177 a          163 c          110 g          180 t
ORIGIN      
        1 ttttgcaaat catgcaccaa accattgctt gctttatcca tcaggtggga tcttaagcaa
       61 aactttatca aagtaacgtg ccactttcct gcatgctgat tttacaaatc tcactctctg
      121 aatgttgttc tacattatgt catcacactg taactcactt catttacagt atctgtttca
      181 cttctactca caagctaata taactcaaac ggcacacagg ctgctagaca catgtgcaca
      241 gcaaatggaa tctgaactta gcttaacagc ctcatttatt cctgatggtt taaattattt
      301 catcacaatt aatgacaccc cctcagcttc ctgtgcagcg ctgccagatg ttcagagacc
      361 acaaagccac tctcttcttt gacggctagt gacaagtcgt cctctgaagg acgttccctc
      421 agtgcacagg ccggatgaca cctccattgc ttagcacctc tctacctccc caagtaacca
      481 tggtgaaaga agaaggaaga catgagaaac cagccagtgc actaccaagg acaaattaag
      541 tgaagtgttc tgaacttgaa ggatcccatc tcctcctact ggagtttcaa gcctgattgt
      601 tttatttgcc ctgatcttca aggtgtgaag
//
LOCUS       KCOD01001720             372 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 191897pyr ultra-conserved element
            locus uce-3636, sequence.
ACCESSION   KCOD01001720
VERSION     KCOD01001720.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 372)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 372)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..372
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="191897pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>372
                     /note="ultra-conserved element locus uce-3636"
BASE COUNT           82 a           91 c           73 g          126 t
ORIGIN      
        1 ttttctctca attcctgggg gtgctagacc atttacccat gaactgtaag ctgtttctga
       61 cgctcagttt atctgtgaag gaagttgatc cctgcatgcc atgacagaga ccattgcttt
      121 gcccatgcct gctccttaca tgtaccgatt gcttatctgt tctgcaacct ctcctctttg
      181 ttactgcttt cctttcactg gatgggattg attccctgtg ggctcatatt agaccacggg
      241 aaatgtctgg gtaacacatg aagagatgga aaatcttaca gccacacaac aaacggttag
      301 tttacagtgt tgccacttct cttccttaga gtgcttttcc cacttcttga attttgaatc
      361 aagtaccttt tg
//
LOCUS       KCOD01001721             778 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 192008pyr ultra-conserved element
            locus uce-4615, sequence.
ACCESSION   KCOD01001721
VERSION     KCOD01001721.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 778)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 778)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..778
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="192008pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>778
                     /note="ultra-conserved element locus uce-4615"
BASE COUNT          176 a          160 c          199 g          243 t
ORIGIN      
        1 ctcttctgct gaagaaagat gggggagttg ggcatggctg ttaattattc ttattctgct
       61 gatcttgcga gtctggtgat tgcactgacg aaggagcagc cttgatttct gcacatatgt
      121 tacagttact tgtaaaagtg ggctcacaga ttgctctgaa gcttttactg ttcctgcaga
      181 acattttggt agttccagca gtttgatcac aaatgcagca tctctctcct aatgctgtgc
      241 aggttgataa aacagttgcc gagctggaat ccctaaagaa attattaatt atctggttaa
      301 tgtgcatcag gctgtgggag tgtgagatta atcaccagtg ctgggatgag ttgctgaagt
      361 ggattttggt ttttcgtctc ctgtcactcg gtaatggctt ttccttcctt caccatcagg
      421 tgaacaggtg cggagatgct gtattttcat tttcctgtag tcgggaacag ccggtgacca
      481 ggagatgcct ctttctcagt cctgctgcat gagcagttta caacatggag cactacccgc
      541 ttcggatgtt ccagctgcag gagatgctcc tgcagcacag gactgacctg agccttccca
      601 gataaacaca tgtgcctggg gagagtgttg ggctgagctg ggtctggctc tcctctgttc
      661 cccaggtctc aaaggggttg ttatatttgg aagtggaatt gcagcttgac tcctattttg
      721 agtgtattta tagtacctgg aatttttcag taaatgaaca ttcagcaaaa atgtgctc
//
LOCUS       KCOD01001722             749 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 192119pyr ultra-conserved element
            locus uce-6838, sequence.
ACCESSION   KCOD01001722
VERSION     KCOD01001722.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 749)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 749)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..749
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="192119pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>749
                     /note="ultra-conserved element locus uce-6838"
BASE COUNT          212 a          140 c          157 g          240 t
ORIGIN      
        1 ggactattcc tagcattgct gtttcataat attatttgta gggagggaag tcagcagacg
       61 cataggctcc tttatagcat tgacaagtca aggagatgat taacgagagt accagacaat
      121 gtaatggtag gagaaggccc acagaagtta aacaaaagtg ccttcagaat ttagagaatt
      181 cccatgatcc atagtaggac ctcattgtgc ttgtctactg tttctatttt tgattagatt
      241 tataaacaca gcaccacata ttttcatgtg gctcatagcc ccagggcaga gtgagattga
      301 ctgcgccgaa actgtgaggc ttgtgaattt cgggcaaggg atggagtgaa ataagtagtg
      361 taattgtttt tgtggagtga ccgtgggacc tcttctgttc tgaattacac atggttcaac
      421 cctttgaccc aaccaacctc ggcaatgcct ggtagatctc ctaaagctgt gctgaaaggt
      481 cctatcagtg acatgttgga acattatctg tcatgtgaga tgtgtgccaa caatcatatt
      541 aaactacatt aattactagt gaggccatgt ttgtgacaat ctcaacttca tttaacccat
      601 catcatgtta gttattgttt aaacaggaag tacaaatggg gctaatttat gaaaccaaaa
      661 tgcagcacca atgttttgtt taataaattg tatgttttac tttgttttat ttcccttcta
      721 cttcccctgg catttttgtt cttgtcatc
//
LOCUS       KCOD01001723             507 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 192230pyr ultra-conserved element
            locus uce-7379, sequence.
ACCESSION   KCOD01001723
VERSION     KCOD01001723.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 507)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 507)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..507
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="192230pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>507
                     /note="ultra-conserved element locus uce-7379"
BASE COUNT          147 a          111 c          140 g          109 t
ORIGIN      
        1 aagaccctgg cagtgttcaa taagtctccg agcctgctaa gtgagatgtt gacagaaaca
       61 aaagaaaccc cgttaggctg gaagagggag agggagagga aggtttgcat acatttcaag
      121 gctcagccaa aatacaaagt gctttttgtg aacgcaagag aaaaggacgt gaagcaggca
      181 aggaggagga agagaagggg aaggatgcct caatacaaaa aagcttagcc tgataaaata
      241 tttaggacgg gctcacacat cagaatatta atgctctgca ttccttgtgc ttgcactctg
      301 ttgatcttca ttctccagtg accttgttta cagtatctga atttgcagtc tgcattttaa
      361 taaggccctg agagaaggtc tgagacacag cgcctcactg aaccaacttc aaaacccctc
      421 cgactggttg gaattctgga ggatgggatg cggctccggg gtgcctggtg cccaccccgg
      481 ggcaggaccg ccaaactggg gcggcgc
//
LOCUS       KCOD01001724             756 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 192339pyr ultra-conserved element
            locus uce-2185, sequence.
ACCESSION   KCOD01001724
VERSION     KCOD01001724.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 756)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 756)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..756
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="192339pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>756
                     /note="ultra-conserved element locus uce-2185"
BASE COUNT          249 a          129 c          118 g          260 t
ORIGIN      
        1 atagcttctt attgaagtgc atttttcttc tgcaaactgg aataaattat aaatggcaaa
       61 attttgttca tctttccaac tttgttcaaa gtgtatgtgc atgttttaaa gtggaatcac
      121 ttactgtttt aatatttgta gtaaatatga aatatgagtc tttcattccc tgctttccta
      181 ccataatgtt aaaaacatac aaatgaactt ttaaggctga tattcgtgtt tgcatgtaaa
      241 taaagcacaa gccacaaaca aagccagcaa tctcacatac ttgccttcag tggtaaagga
      301 tggaaaggct gcctgctacc aatcagcaag tggttgctat ggttacaagg tcaggaaata
      361 tgccttttcc ccagttgtcc aaggcttgca catgtcactt ctgaaactat gaattttata
      421 tacaggtcag gagatgcata ccaaagaaat aaacagtgaa ctggaccata atgacagcta
      481 acgttcaaac gtccttgaat tttttaaatt tctatccaaa cacattttgt cattttgaat
      541 gggttggttt ttttgtataa aattggagca attctttcct gtaatgaaat tttgcaaagt
      601 agctacaaac tattattata agctgcatca ataactttcc tcagaaagat acttatgttc
      661 tttcccttta taaactcttt aaattacagc tttggaatat tataagaata taatttgatg
      721 caacttaaga actcagaata ataactgctt tctgaa
//
LOCUS       KCOD01001725             761 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 192449pyr ultra-conserved element
            locus uce-1207, sequence.
ACCESSION   KCOD01001725
VERSION     KCOD01001725.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 761)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 761)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..761
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="192449pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>761
                     /note="ultra-conserved element locus uce-1207"
BASE COUNT          222 a          180 c          138 g          221 t
ORIGIN      
        1 aagacatctg catgctgaag ctctgaaagc ttcagagctt agaccaccgc tgtcaatttc
       61 tccccagata aaaggaaagg tcttctcttc cagggcttct tccctccttc ctggactcat
      121 tgggaccaca ggctctgact cctttactgc ttctctgcaa tttcacctcc aattgcttgc
      181 actgcccatt gtggttaagt cactgatcta gacagagcca ccttaacaga aattttggat
      241 gggtcttagt gaaggggcgg aaaaaagagg acataatgtt taattataag aaatgattga
      301 aataggcaca gacatacccc gggtgcctct gcactgcagc aagctctaaa cttgttatcg
      361 ttaatggttt aaatttcact gtgctaatca tttcaggaca caagcctttc ttgataatct
      421 aatgaattat tccaacatcc ttcagcaaaa aaaatcctcc atgacagcac taattacaag
      481 acgttttccc agtgcttatg taaaatatga cagagcagca gcttagggaa ttgcagaaaa
      541 ctgcttctaa tttccactga gaaactgaca aacacctctc tttcatctct cccagctctc
      601 aagtaagatt taactttctc atttagttaa ttaccgagtg aggatcatca ttttcccgga
      661 tcggagcggc acagagcctt tatcgtgtta acttgtgaac ttgatcgatg gctgctgcta
      721 aaacttaata acttcacccc ctggcaaatt gtaagataaa t
//
LOCUS       KCOD01001726             301 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 192556pyr ultra-conserved element
            locus uce-7659, sequence.
ACCESSION   KCOD01001726
VERSION     KCOD01001726.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 301)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 301)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..301
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="192556pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>301
                     /note="ultra-conserved element locus uce-7659"
BASE COUNT          101 a           73 c           41 g           86 t
ORIGIN      
        1 tatatgtgag tgtcacatgc tcccagacag catgccagga gagagattta aacaaatatg
       61 tctttctcta aatagtgtat gttcccctgg tctattcatt tcattctgct ttatctatca
      121 aaaatatatt aacccaaaag cctgtttcca tcaaagtctc gattccatga acatttaaag
      181 ataagcctta tcttattact ggtgcattaa caacagaaat ctaaagggct actgtcaatc
      241 atctccctcc ccccaaaaca gttctggcag acacaaatac acaagacacc aacatgcaca
      301 a
//
LOCUS       KCOD01001727             383 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 192661pyr ultra-conserved element
            locus uce-3314, sequence.
ACCESSION   KCOD01001727
VERSION     KCOD01001727.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 383)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 383)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..383
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="192661pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>383
                     /note="ultra-conserved element locus uce-3314"
BASE COUNT           90 a           83 c           95 g          115 t
ORIGIN      
        1 ggtgtgttca agggtcagct cagccatctg taggtgaggc tctccttgca actcttgtgc
       61 tttaatccca gctcggggga gtgaagctgt ggcaacctta agctgtgcca ttactcctcg
      121 cagcccagga ggtacccagt gtttgtcatt taggagtgtc atctcattac attgcatatt
      181 gcagtgtaat gatgtgaaat gattaaatga caaaatgcca gctcactgcc ccttaagcag
      241 cacactttta aaagctatta ttaatttctc tatggtcttt gccagaaaat aacataaggg
      301 aggtgggttt ggtccttctt ctaatttgca atgagtcgtg ggagtgctgt ccacctcgag
      361 agcatatgtc cggtgccagt ggt
//
LOCUS       KCOD01001728             657 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 192768pyr ultra-conserved element
            locus uce-4313, sequence.
ACCESSION   KCOD01001728
VERSION     KCOD01001728.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 657)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 657)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..657
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="192768pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>657
                     /note="ultra-conserved element locus uce-4313"
BASE COUNT          191 a          149 c          106 g          211 t
ORIGIN      
        1 aggctagtat tatattatgt tcggcacccc atcccaaacc cactgaacca ctattcaaag
       61 tgttcaaatt acagcatcct acaattttcc ccatcttttc aattttacac aaagcatcag
      121 ctgacatagg aaacgtggtc ttatttgggc aaccttgttc tccgagcctg ccaactgctt
      181 cgagctaaac aatcaatgct gtccttctca actttttcct ttccaattaa ttaatttaaa
      241 ttgaccatta agtcagcaga gtttttgatt gatattttca ttaacaaccc tctcatgcag
      301 acctgtccaa cacctaagaa atgtatgata atgtccaatc tgcatgaagg ggtctgaaca
      361 tctcccttca cctctcagtg ctagtgagtt attactcgaa ttgtgcttgc tgtttcattg
      421 agtgtaattt gaatacagat tagctgcccc agtgttccag agctttggca ttatcattac
      481 tggggacagt aatttgactg atgaacacac aggttatcac aaggtcatca ccttcacagt
      541 attggaatgg tccatcgtcc caattttgga gggaaggagg ctaaaccttt caatagcaaa
      601 attaagtcct gtaaattaac ttgtccaata acttattgaa taaatccttt actaatt
//
LOCUS       KCOD01001729             646 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 192876pyr ultra-conserved element
            locus uce-1136, sequence.
ACCESSION   KCOD01001729
VERSION     KCOD01001729.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 646)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 646)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..646
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="192876pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>646
                     /note="ultra-conserved element locus uce-1136"
BASE COUNT          227 a          106 c          124 g          189 t
ORIGIN      
        1 ataaatagtc gttgtgggaa actggagtga aagattgttc cagtgtctac aaaatacttc
       61 aacagactga caagagagtc acatttcagg caaacattaa atagcgccaa cacgttaaat
      121 gatgatatga aaggtaatag ttcacagaaa tatgtaggtg tctgctgcac acaaaaggta
      181 aatagctgtt ttgaactgtg aagactattt aaaggtttag tgtacacctt ggattcctgc
      241 tgcctacata agtacagaga cctaaatcca ctgcatactg ggactaactg atcaaagcag
      301 tagttaaatc tatccatgga aaatctaagt agtctttgga ggcaattctt tgaatgcaga
      361 ttagtgattt cattgaagta gtcaatcagc tttttttctg gttgttaaaa tgtcactgag
      421 tgaacagagt agataaaaaa aatgatgagc aaaaaatagt atttcaactt gaacaaactt
      481 gctatttgta gactggatca catgaatctc cttcagtcaa gattatttca gaggtagcta
      541 caggaatgaa tcccacaaag ggactaagtt taatcatcca atcccagact gtattgattt
      601 tggaactact tgcaatgact atataaataa gccatttctt tgcaac
//
LOCUS       KCOD01001730             661 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 192986pyr ultra-conserved element
            locus uce-6959, sequence.
ACCESSION   KCOD01001730
VERSION     KCOD01001730.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 661)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 661)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..661
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="192986pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>661
                     /note="ultra-conserved element locus uce-6959"
BASE COUNT          205 a          119 c          105 g          232 t
ORIGIN      
        1 tccccagttt agtcacctac ctgaatggag gtaacactca ggggaagatt gacacaggat
       61 aaatgaaaca attgcatcct ttccgtaggg ctttccagca aattgtacaa taatccttgg
      121 gatgattcat aataaaaaat aaacatccag atagcttaaa ccattgcttg cattattttc
      181 ttatttaaat atcttaagtg ttttctaatg ctgcacctac ctctcagtca caaatgctgc
      241 cttatagttc aaagatgttt gctttaaagt taatcctttg ggctctgtaa aatggacctt
      301 ttgtctaatc aatgcaaatt gattttgcta ttctgtattg acctctcaac cctttgactg
      361 tccatggtaa tttctttctt cacctgataa ggtacctgat ccataataaa tcaattctaa
      421 ttagtttgga gacttcactg ggagcataag tttgttggaa aaaagcagca ggtttcaggt
      481 agctttttcg tatctctcca tctgtggtta tattttttgc ataagactat ctttactata
      541 ttcttggata atcctgagtc ataaatatat acaaatttgg aatcgtactg atgaaatata
      601 aaataatcta aaacagagag gagctgatac tgaatttaaa tctaaacttt ccatgtttaa
      661 t
//
LOCUS       KCOD01001731             639 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 193094pyr ultra-conserved element
            locus uce-5037, sequence.
ACCESSION   KCOD01001731
VERSION     KCOD01001731.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 639)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 639)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..639
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="193094pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>639
                     /note="ultra-conserved element locus uce-5037"
BASE COUNT          209 a           94 c          122 g          214 t
ORIGIN      
        1 ttcagaataa aatggtccaa ttgccaaaaa gactatcacg aaatactcaa aagcactggg
       61 ggccaagggt cactgaaata cttccctgat ttttatatca ataaatgaag tttacaataa
      121 tcctttggct gggagatatt tagctgcata ccaggatact attaagttac taatactgag
      181 taactgttct atatgtctct agatttgttg aacataatgt ctatatgtta aacagttttc
      241 tatggtattt aaaaattgac atttcaaaga gtgtaatagc ataatgaaat gtaaactgaa
      301 aacaggaatg agttaattag actaatgatc ccttgactcc tttattagcc agctctttag
      361 aaattgggat tagctttgtt ttctctgctg aataaagaca ggaaggatga tgttgattct
      421 agtaaatgac agcaccagaa gaaattagcg ttttcctgtt cgttataggt ttcatcatgt
      481 gagataaaaa tgtagccctc ctgcatgcat actttcactt ggattgggaa aataatttag
      541 gaatgccttt ttaagggtaa ttatgtgatt tctggacttg aaactttgta actctttgtg
      601 caaacctgga gtagactggg tttgaattta aatgaagtc
//
LOCUS       KCOD01001732             566 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 193202pyr ultra-conserved element
            locus uce-7079, sequence.
ACCESSION   KCOD01001732
VERSION     KCOD01001732.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 566)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 566)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..566
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="193202pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>566
                     /note="ultra-conserved element locus uce-7079"
BASE COUNT          164 a          102 c          128 g          172 t
ORIGIN      
        1 tttgtgttca gaatgggtgg gtgagctctg tgtacatttg tgtcccatgc aggtgaaggt
       61 accactggag aagttgagca tgatctgttt atggctgtgt gtgtggagtg tgtgcaatcc
      121 tgagcacttt tgttgtacag ccaaagcaga agataacaat aaatttttta ctgctggctg
      181 gcagaggtgt ttaggatgtg ttttctttat atcttcatcc gcccctaatt gaagatgctt
      241 taaaattgaa tgactagcag tcaaaacgtg tttgcttcaa actgagaaga aaaatgctgg
      301 tgtctcttct tccaaactga ttgcgctttg tacacaactg acagccacag tcactttgag
      361 tgactgataa gtgggaagct ttgccactta tcaaggaatg cacactgaaa agaaaggact
      421 ggagccgttc agatgctttg gcatgttcaa aataacatct cacatcagtc aggctcagga
      481 gacatttcaa aataaacttt atatctatct ataaaaattc aatttaacag acaaatcgct
      541 gtgtggcatc acattggctc tgaaaa
//
LOCUS       KCOD01001733             745 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 193310pyr ultra-conserved element
            locus uce-3560, sequence.
ACCESSION   KCOD01001733
VERSION     KCOD01001733.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 745)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 745)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..745
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="193310pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>745
                     /note="ultra-conserved element locus uce-3560"
BASE COUNT          245 a          147 c          144 g          209 t
ORIGIN      
        1 tgttggcata aaagccctgg accagccatg cagatgacaa gtccttttct gcacaccttt
       61 ggagagttat ctgtttgtaa aagcctccga tgtcaaagag gttgaaggaa agcttacaaa
      121 gggagggaga gaaagcaatg gaaaacccca ctcatcttac atgctaaaga aataatgtct
      181 tttctaaatt acgtgcagac ttgtttccat tttcatattc tttaccaggg ttttttttgg
      241 aagctacaga aaatgagctt aaaaaaagta cttcgccctg caggaataca aaaattgtaa
      301 aagcacaggc agcactacag aggagcagtg ccattcactc acaaagaatt ttgtgcatgt
      361 agatggctga ttaattgctg gcctgcctag acgaagctgc aacgagccag atactgtcag
      421 catgccatct gttaccatgg aaatgcacaa tgttcctgtt tctgacaaac ccttgaatac
      481 tggatagatt gtgccatatg taaataaggc aaattagttt tcctatatct tccagacaag
      541 gttagactaa aagaaaatat atctgtttat ataccgtaac ctccaagatg tgaactaggc
      601 aaagcttcct cataaaaatc tcattcaatt tgttgttaga actgaaacag tgtggactag
      661 cactacccaa ccagcaatgt ttacaaaagc agtacttaaa aatatgcata ttctgtatgc
      721 atgctacatt catcatgatt gttgg
//
LOCUS       KCOD01001734             748 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 193420pyr ultra-conserved element
            locus uce-2887, sequence.
ACCESSION   KCOD01001734
VERSION     KCOD01001734.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 748)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 748)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..748
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="193420pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>748
                     /note="ultra-conserved element locus uce-2887"
BASE COUNT          241 a          153 c          131 g          223 t
ORIGIN      
        1 taatagcatg agttcttgag gcctgaaatt gcatagaatc tgattaacct tgcataggaa
       61 gaaaatccaa aaggtaaaat acagttcagc atctattccc agtgcttatt aaatacagga
      121 aataaaggac aagcaagttc ttgcaaatta aagatgtgga gcccagtcat ttcaatccct
      181 ttcaatatga aacaaatcac tcacactggt cacgaagaca gctccctcta cactcaaatt
      241 attcacttga agataagctc ccatcaaact ctttaggggt ttaactaatt tactgcacag
      301 atacggcacg tctgttgtaa taacaggtag gatgtattgg ggtcgaccat ttatcagaat
      361 tagacttctt ttttcaattc acagtgaatt atgctgccta cactgctcct ctttctcaga
      421 gcttcccatc cccttacggc ccctaatgtg gcaggcaaac aaaattgaca gtctcatctt
      481 gtcaacaagg ggtgattctc ctgagaagcc atttaacttt gcagaggaag caatgtatta
      541 atgtgcctgt cccaggaatg ttaatcatct tcaagctccc tctaactttg acatgaacaa
      601 aatcaccaaa tttgtttact aaatgaatcg taatatgcta ataagagagc atgacatata
      661 tggtaaagcc aaacagatgg tttgtttact ccactttgca actttataaa tgttgtaact
      721 ctgaagatgt tagtgagaat tattggtt
//
LOCUS       KCOD01001735             571 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 193635pyr ultra-conserved element
            locus uce-7552, sequence.
ACCESSION   KCOD01001735
VERSION     KCOD01001735.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 571)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 571)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="193635pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>571
                     /note="ultra-conserved element locus uce-7552"
BASE COUNT          182 a          111 c          113 g          165 t
ORIGIN      
        1 aatcctgagt gctttccagt gaccagaagt gcatagtctc atttttctcg ccttgaacac
       61 cccaacaccg ttgatcaaca gcatcggacg caaaagcttg acttagactt gaaaattttt
      121 tcctaaacgt ggcaacaagc gcaacagatg caattctttc taggtctcta ggtaacattt
      181 gaacctgtgt aatgttcgca gcacagcacc gtaagtaata ttccaggaaa tgcgctgccg
      241 cttgttaaaa aggataggac cccagagatg cctttaaata tgcctgtaaa gtgagaggtg
      301 ccaagagaaa gataatatgg ctgattatag ttatttacct tacattttca ttcgccctta
      361 actgggtgta atttaggggc atgaaatctc ttattggaag tgtatttgca ttaaacagct
      421 ctaagcaacc atgaaagtgc agaagctgaa aaattgacag actgggtttc tagaatccca
      481 aagtagcata ataggcatac aaacaaatca aataaacatg ttttgcttca acgatttaaa
      541 gaatatggtc tttggagtaa tttgtctctt t
//
LOCUS       KCOD01001736             668 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 193740pyr ultra-conserved element
            locus uce-4504, sequence.
ACCESSION   KCOD01001736
VERSION     KCOD01001736.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 668)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 668)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="193740pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>668
                     /note="ultra-conserved element locus uce-4504"
BASE COUNT          219 a          117 c          106 g          226 t
ORIGIN      
        1 tctccttgga gatgaattaa attgctgtaa aacaaataat ttacatttaa ataacttatc
       61 tccttttcac ctaatttaaa agtaatcttt actctttctc aactaatccc taaatttata
      121 agccagtttg atcatatttg tgcaataaaa ttgaaaattt tagatatggt aggtaatcac
      181 ttttagtctc ctcatctgtg tttccaatct cattacagat tgcaattttc agtgtagatt
      241 acatgatgac ccatcagagg ctttgttgtt cctgaattac tgattcctct actattgcca
      301 gataagaaca aagactatgc atcagtctga cagcttgcaa acagaaaatg ggcttgtagg
      361 attggattta aatcccaggt gtaggggata attaccacat cagtcatgca gtaactgaaa
      421 aatggtattt caacaagaaa aattgcattc cttttatagt gccaacagaa atcatttttt
      481 tcatactgat tcagtgcatc attacatgtg cactgtactc attaaatgta atgtttgttt
      541 tgtttcagat acttttgtgg ctgagttagc tcaaatcaag atttgtgaaa gcttgacagt
      601 gctgaggtca ttcaaaggcg taatatacat tatacaagtg aaacagcaga gcccaaaaca
      661 tccaaaac
//
LOCUS       KCOD01001737             477 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 193850pyr ultra-conserved element
            locus uce-5855, sequence.
ACCESSION   KCOD01001737
VERSION     KCOD01001737.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 477)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 477)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..477
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="193850pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>477
                     /note="ultra-conserved element locus uce-5855"
BASE COUNT          145 a           88 c           86 g          158 t
ORIGIN      
        1 tttttccgtc cctagcagtg gcaatctcac acttctggaa ctccaacaca tcactgactg
       61 ttagagagca tggattccct gtttaatgct ggttcttggg tcttaaacag tcctccgctg
      121 cttttattat accattaatt gcacttaatg cagctgcatt tctagtacgc ttggctaagc
      181 tctgaaaatt aagtagaggg tactttgtta taaaatgcac tgtaatgagc tctggtggga
      241 cagggtctgt taagtttgaa attacctcag gccatttcca aaggtcttct taaaatattt
      301 cacatctata aaagtttgca actagataaa cagccaaagg gttgggaagc tacagccctg
      361 aaatatacac tggatgaaat agaaataata ccaatttgtt aaatttattt tagacattta
      421 ttatctcaag taatttgtta aacagaaagt tttctagctg acagcatgta aatttta
//
LOCUS       KCOD01001738             838 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 193960pyr ultra-conserved element
            locus uce-1886, sequence.
ACCESSION   KCOD01001738
VERSION     KCOD01001738.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 838)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 838)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..838
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="193960pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>838
                     /note="ultra-conserved element locus uce-1886"
BASE COUNT          244 a          152 c          162 g          280 t
ORIGIN      
        1 tattcattct gccctggcca accgtttccc atttcagtca tagactaaat gttttcaaat
       61 tatacaaagt tcaagtcctt tcataaaatc attagtattt ttgtggtatt ggaaacattt
      121 caatagttgc ttttattgaa caaaaagtct ataccatctg caaaaggaaa tattgaaaga
      181 aaaatatata tggaaagcct ttatcagtaa atagaattag tctccttgca tttataaatc
      241 aaataaatgg aaagtgtgtt gttatgaaac atgaccatgt cttatctgaa gaagaaaaag
      301 atcacaatgg cattaggaaa tgcttgactt tagttagaga ggcgtaaggg cacaagaaca
      361 gatgatggtg ccctaatagc cctttttaag aatgacaggg ccccgccatt agcatccttt
      421 tatatccttg gaaattgctc atgcctcgct tttatggttc ctatctgcct gactcttttt
      481 tatttctctt tcaatttcat ccgcgctcgg ataagcgcat gctaacacaa tatgattgag
      541 ctgtaaaatg gaacgctgtc gcctctaatc tcttttatgt agatatggag gtacttccac
      601 actccacttc attctctctc cattgttggc ctttttagaa tgtgttgccg agtaatggag
      661 gctcagtcaa atattagagc taggtttcac agggtgtgat aagaagatta tcaggccagc
      721 agtcagatct attgttgttc tttgtgtcag attaaaatat tctgatgtac tgtaactttg
      781 ttagtaaaat actggaggtg cttaggggat gctgcttggt ctcctgcctg gtgagaca
//
LOCUS       KCOD01001739             742 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 194074pyr ultra-conserved element
            locus uce-655, sequence.
ACCESSION   KCOD01001739
VERSION     KCOD01001739.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 742)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 742)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..742
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="194074pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>742
                     /note="ultra-conserved element locus uce-655"
BASE COUNT          218 a          100 c          141 g          283 t
ORIGIN      
        1 tttgtgtttt cttgtaaatg tttcttttcc ccttaaagca acaaatattt catttgtaat
       61 gcttatttta ttacgagctt caaggagagg acgagtaagg tgtgaggtta taatttctgg
      121 ttgctgatac caacactgcc acaaaagggt agttgttttt aaaataacta gctagccgag
      181 tggtagatgt ttaatttttt aaatgccttg tacaaattcc aaaaccaact tcaaaatgtt
      241 ttcacttgta ttgattttat gttgaatgga tcccaagctc tctcctgtta attctttacc
      301 tttgtaagac atttgtatat tgcggaagtg ttcattcaag ctatttaata cctggcactg
      361 ttaatacaca gtactttatt gtacagattg ttttactgtt ttaattgtag ttctgtgtac
      421 ttcggggaag taggggctgg catgtttttc tttgttttct ggcaatacaa catgtaagaa
      481 tttgaagcat tttgtttgta gatgctagag tgtcagaatc cttttcattt gacttttcta
      541 agaaaagcat tttcagtctt cgtagtgtgc gcttaaggtt ataactgatt ttattgaaaa
      601 tggtttcaaa gtattcagaa ttgtacagga ctgtaaaaat ttgttgacag acattgaagg
      661 aaaagcttat agaagctata aaatatatat taggttctgc agaaaatgga gagttatgta
      721 atatattgta caaatgtaag ca
//
LOCUS       KCOD01001740             708 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 194184pyr ultra-conserved element
            locus uce-1419, sequence.
ACCESSION   KCOD01001740
VERSION     KCOD01001740.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 708)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 708)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..708
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="194184pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>708
                     /note="ultra-conserved element locus uce-1419"
BASE COUNT          211 a          142 c          149 g          206 t
ORIGIN      
        1 tcagatgcca tgaatttcaa attaataggg atgtttactc tctaatacaa aatttacatg
       61 tattagctta taaaatatga atgtgcccgt tccttgctgc aaaatacagc atttccattt
      121 aaaactgcag agactttggg caacactcag gcttaggaat acctcacatt tcattttggt
      181 tagcctatta tttgtagttt tgaaacttta ttggtccctg atctaatctt ttctgagtat
      241 gaaaacatta acatatggtt taacacagca cagggctgga aagtccatat cccaaatgca
      301 cattgtatgc agggtgacat tcacactaaa taccatccca cagggtctgt actccatttt
      361 acctgggatt ggagagccat gaaatctctg gaaaagttgt tcatgagtct gaaccaaatg
      421 gcgtgcagtg tactgagata ctagcagcgt gtgctgctgc caaaggttgt ggctcaaatg
      481 tctctctaag taacattaaa aatctgctgc ttcatgccta tgaatttcaa tatttatagt
      541 gttcaataaa atggtccact gtcagagaga gatgtgccac tgagcactct ctgagcagat
      601 gggctgcaat atggcacatt tacatggacc agctgtggag tgcagaaatg aatgctggtc
      661 agaggcaggc tggaggcacc acatctggaa tgaaaacaga ccggcctc
//
LOCUS       KCOD01001741             635 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 194292pyr ultra-conserved element
            locus uce-1499, sequence.
ACCESSION   KCOD01001741
VERSION     KCOD01001741.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 635)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 635)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..635
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="194292pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>635
                     /note="ultra-conserved element locus uce-1499"
BASE COUNT          182 a          130 c          131 g          192 t
ORIGIN      
        1 tcctttaata tattgacatt ccagcccttg gaacaaggtc ttcactcctt ttctcatttc
       61 aagatcttgt tttgggagag ctctaacacc tgtccactga tcgcctgcca gtctgcatct
      121 gtgcccagct gacagagctg tctgctttga ctaatgatgt gattgatgga caaaataagg
      181 aagaacacac aaaaaaacat ttctgtctgg tctggtgtgt cagcaagcct tcatcaagtg
      241 gctgctgaag gtatattttg ctgcatgcct cattacacag taatggcatt cccaggcaaa
      301 gctgtttctt ttcatgacac aagacagcag gcagctttat ggactctggg cctatcgagc
      361 ctggaggaga gaagcactaa agagtggtca tttccaaaag tgcctcaagt tgcttttttg
      421 ttgtcatgaa tttaatatga atcaacacaa tatgaaatga gcatgaggaa ttttagtgac
      481 tagtcatttt ttaagactgc tgtctaaaca gccatcaagg tttttttcta ccaaacctgt
      541 tgcaaaaaga agtcatctgt caattttatt acattaaaaa agtacacagg ggcgtatagt
      601 ccaaacaaat gtgtgcttca gtgctagaca tgtgg
//
LOCUS       KCOD01001742             829 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 194402pyr ultra-conserved element
            locus uce-906, sequence.
ACCESSION   KCOD01001742
VERSION     KCOD01001742.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 829)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 829)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..829
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="194402pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>829
                     /note="ultra-conserved element locus uce-906"
BASE COUNT          246 a          195 c          188 g          200 t
ORIGIN      
        1 gagtggaagg gaggagaata caactttggg aacacaaaac ccgagctatt ttagcatact
       61 gtacacaaac tccgagtggc aaacagtgct tttggagaac taccaaaaga aattattcaa
      121 gttaagcttt attttggata tattcctgat taagcctgag cacaatgaaa aaaacagtgt
      181 gaaggcacaa tgctgaatgg catctgtgct tagagcttca gaggactgct tactgtcata
      241 aaactctgtg tgtcaccagc tgggggccgg ggatttaaag atgtcaggag gacctggtct
      301 ctcagatggg ataaagatca gaaggaaagc tgtccaggtg atgcccaggc ccctgaacaa
      361 gcctatctgc actctcattc aaatgataat gagtgtgtaa atcacatctg ttccccctct
      421 gtgcctgtat ccttgtcacc tgaatagcat ccccaccagg tatcaaatga gctccaggaa
      481 ataggtttct tttttatcca acttcgctct gaaatgagaa aatgagcacc ctggccagga
      541 ggccctgcaa accaaaaggg attgcagcct ttgggctcct cgccaccaag gaggcttaat
      601 tgtggtcggc gacgccaaga gcctaaaaca aacgccggca cggagctgga tgctggagtc
      661 cctttcacaa cagccacata aaagtaggtt gataattagt ggccattgac tttaatgatg
      721 taacgcgcta ataatggcat tgaaaatcac ccctcattgt ctgtaatacc aaccccgatc
      781 ctacctatga aacatctctc tgcacccagc ccaaggaatg cctggattt
//
LOCUS       KCOD01001743             675 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 194514pyr ultra-conserved element
            locus uce-215, sequence.
ACCESSION   KCOD01001743
VERSION     KCOD01001743.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 675)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 675)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..675
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="194514pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>675
                     /note="ultra-conserved element locus uce-215"
BASE COUNT          197 a          133 c          141 g          204 t
ORIGIN      
        1 catacaacag attgaggctg gtataaaggc ctgggactgt gcaagggcac cctgctgagc
       61 ctcagctgtg cttgcaatta gcaataggca tgaaatgatt attgttgtgg tggctgatgg
      121 caatctgaag cgacaagttt tatgggggaa gttgtagtag tgatgttcag caagtttctg
      181 caaaccatta atcgaaggct gcagcacagt ttagtcaaag ctattttacg tcattccaaa
      241 ggtctcacag ggatgctgaa agaatatttt tctgctctca gtgccttttt ttctaggtca
      301 gggattcttt actgccctat ttagtgtcaa aaatacccat ttgcctcaaa ttagcagaaa
      361 gcttgtagtt aagggctaga gattaggcat acaaaattac tcagcaggtg actactgggt
      421 ggatttggag ttgagaagtc tttaaaactg actacaagac attatatact tctgacaaaa
      481 gaacatagta atcctacctg cttgctttaa ccactgttgt ttgtctatta ttatgtgctt
      541 taatgatcat aagagcaaaa ctactggtga tactactcaa ttaccatagt aactctcccc
      601 tatgacctct catttcagtg ctcgctttcc aaccagaacc aatccaagca gggcaaatct
      661 atttaaaact gtgac
//
LOCUS       KCOD01001744             452 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 194620pyr ultra-conserved element
            locus uce-5234, sequence.
ACCESSION   KCOD01001744
VERSION     KCOD01001744.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 452)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 452)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..452
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="194620pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>452
                     /note="ultra-conserved element locus uce-5234"
BASE COUNT          140 a           74 c          100 g          138 t
ORIGIN      
        1 agctagaaca tgaagcaatc catgtatttg agcacctggt gtgttgttag ctgtactcta
       61 tttatataga gaaacacatg aacttccaga aaaggtttga gtgcggtgat ttaaaagaga
      121 cactagaaga ataaaagaag accaggaaga tagtggttaa ttgaccttta ttgtgccttc
      181 tggttcattt agaaatggaa attaaattaa catgataatt cagtcctact gtgttaagac
      241 ggctataaac ccattaaatt ttatggccac tgatttaaca tttttttcta ttaactgggt
      301 ttaattttca atattgttgt gcaggttctg aaaagtggta gcttgaaaga acccaggtgg
      361 atgaacgact gtgtagctgc ttgatgccag tggctcagtt aggaaaagca tgggcccagt
      421 ctctcacagg catgcactga ttctggcacc ca
//
LOCUS       KCOD01001745             621 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 194727pyr ultra-conserved element
            locus uce-5893, sequence.
ACCESSION   KCOD01001745
VERSION     KCOD01001745.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 621)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 621)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..621
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="194727pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>621
                     /note="ultra-conserved element locus uce-5893"
BASE COUNT          143 a          123 c          114 g          241 t
ORIGIN      
        1 cgtgtgaacc aagtagctcc ggctgttact tcttattttg catacccaaa ttttttttca
       61 aacttcggag ttttatttct gagatctgag aaataaaaac tcaaacacca catggtattt
      121 accacatgct gtgactgata aataacaact aagtctccat aaggtcattt cagaaaactg
      181 tgtgtgatat ttcaacacag ttttctgtgt acgatttctc ttcaaatagt tacttttgta
      241 tgtctttttt tttccatatt atttgtgagt ttctcttggt ttggttttgg ctatgatttt
      301 ttaatgagtg gtttaaatgt gccttcttgt tttccttatg gcctatgacc tatcaccttt
      361 ctgttctgtg actggctgtc tctgcttatt ctgcattagg aggtacgtat ctgattgctt
      421 tccagtcccc tcttcttcag ttgctcattc ttttattttc ttcctccttt tcgttgtagc
      481 ttgctttttc cactaacagt ggtgctctga gggactggca tgtcagtgta actcacatgc
      541 gagtgtgttc cgcaagagag gaaggcgttt acacgtaaag cagaaaaata cagatgacct
      601 tctctcattg atggaaaaac g
//
LOCUS       KCOD01001746             837 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 194838pyr ultra-conserved element
            locus uce-62, sequence.
ACCESSION   KCOD01001746
VERSION     KCOD01001746.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 837)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 837)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..837
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="194838pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>837
                     /note="ultra-conserved element locus uce-62"
BASE COUNT          289 a          188 c          147 g          213 t
ORIGIN      
        1 ctgactgctt ccaatcatgt ctttccccaa tggcaagcct gtgcaattac cagcactcca
       61 ggaggtctac agacaagcct ttaccctgca aacaaaatac agcttgtagg ccataccagc
      121 tgccaaacca cacacatagt gataggttta aagaggtctg aaaatctttc taactccata
      181 gtataggcaa taaaaatata actgtacctg caggaaagaa agctttaaat gacactgtat
      241 aatgcacaca ataatacaaa ctccaactta atcaaaatga taatgacgta tgccaatcct
      301 acattacttg aaattgagcg atttttatgt tctgacaagt ttacagaact aggataaatg
      361 gcatgaatga tttcaatata tgctcatact tttgaaccaa atggtgaagg ttaaaatctt
      421 tcctttcaag ggcctcaatc agccacaaag gaaaacagta atcactgtct tttcagccag
      481 cccaaccgca tttgtcagcc ctttctccgt caatgcagcc agagcaatca acctgccaaa
      541 cattcagaat ggaaaaacaa tctgaaaata cagggtataa tgcacctgcc agtgaaaatg
      601 gccatttcaa gaaaagctag tgatctcagt gaccctgctg aggaggcggt ggtgcaaagg
      661 ggaaagaacc cgtaaaagaa ttcttagtga tctccactct cttgcacatt gacacttcct
      721 tacaaagcat gccaattaca gcttttgtgc tacttaaaaa aaatgaaagc ttttttgggc
      781 aaaataatca cgcaaagaaa cagaaagaca ctgctccttt ttcgatggat tcgcatg
//
LOCUS       KCOD01001747             560 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 194946pyr ultra-conserved element
            locus uce-2938, sequence.
ACCESSION   KCOD01001747
VERSION     KCOD01001747.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 560)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 560)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..560
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="194946pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>560
                     /note="ultra-conserved element locus uce-2938"
BASE COUNT          137 a          141 c          147 g          135 t
ORIGIN      
        1 agacttggaa actcggggag gagacagcag atattgctcg aaaagctggg gaaggtgggt
       61 gctgaaggcc gagccctggg caggctggga agcgaccagc ggctagcccg aggagggtcc
      121 cacccgaccc agctaagagc agatttcgct tctcttttgc tttgtgttct gtgcagaagt
      181 gaaaataaac cccgccctgc ctttgggagg ctacttcaga caaaactgtt atccattaac
      241 atccaattat cacttggtct aagccattaa ttataaatca gcctcctaat tgggataatt
      301 agctctctgc tacttaatgt agtatgactg atgcgtttgg aaagaaggta atcagtccat
      361 ttgtttagcg ttaggcgaac aaatccaact ctcatggttt aatttcagcc gcagccttcc
      421 caccaccgtc agcattcaaa gctcattgca gctccgttaa ttgtttggga atcacggcgg
      481 ggatgggcac acgcatctcc gcggggcttt cagcagcccc tagccagggg atgcgacagg
      541 attcgccctc cctcgagggg
//
LOCUS       KCOD01001748             706 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 195055pyr ultra-conserved element
            locus uce-2823, sequence.
ACCESSION   KCOD01001748
VERSION     KCOD01001748.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 706)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 706)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..706
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="195055pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>706
                     /note="ultra-conserved element locus uce-2823"
BASE COUNT          183 a          157 c          129 g          237 t
ORIGIN      
        1 aaagatcgaa aacggctctc caaggtttgt aaatgtgttt gtctttaagg tttgttccag
       61 aggaaaccat gcgtgtctta gctcgctcca tatgcaaact cttacacgat ttttaaacat
      121 gctaatgctc acattctgca tcccaggtta atcgagaagg gttttttgtt ggttttctac
      181 tagcagcttg cctacaatcc accaacccac cactctttat gtatatatgt tgaataatta
      241 tgaagctgtg agtatttatc accttttctg agcagtaagc agaaagaaat acaatactat
      301 tacttccagc tactggcttt cccaagataa ttagataaca cagtggactg aagccttggt
      361 tagcccaatg ctgttcaagt taagtgattg acatgcctct gtctggctgc tctattaact
      421 gtttcatttt gttgctattt gcagtttgct tggctaatac ttcgaacaaa tacagactgt
      481 ttctttagcc ccttttttct ctttgacctt ctcctgccca ttttctttga gtcacttcaa
      541 actgccttga aaaggcctgt tgaatgtgca cagtccatca gagtcccagg ttcatcccat
      601 tccttgccct gaatgcttta cttcaaagat gggccgcatt ctttaattgc cctttgaatt
      661 aatatcaaag ggtcacaatg cgagtgccag aagagaaaga ggcttt
//
LOCUS       KCOD01001749             774 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 195161pyr ultra-conserved element
            locus uce-1216, sequence.
ACCESSION   KCOD01001749
VERSION     KCOD01001749.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 774)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 774)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..774
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="195161pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>774
                     /note="ultra-conserved element locus uce-1216"
BASE COUNT          220 a          178 c          192 g          184 t
ORIGIN      
        1 tgtgtccttt ggtgtttgca gcaccttcca tcagcctgta cagcagcaac gactaattca
       61 tcagtccttc ggcaaacacg agtccagagg agcattgctg ggagttcagt gctgctgcct
      121 gaagggtggc aaaggggaaa gaaatttctt cttacaagga caaaaaacaa acccaaaaac
      181 ctggcccgac agaacaaaaa caaccccaac aagtaccttg tagtctttta aagcctcatg
      241 aatatttagt ttgtcctcat gtaaaatata tgactttgtg taaggatcag gcaaaggagg
      301 tgcatgattt ttttctgatt tatgggccca gcaacggatt attcatagca gagcagctgt
      361 gtggaaagat tcatccactg caaaatgtga ttgtacatca ggcagtgtga gggaacagag
      421 ctatgactaa tggctacttt acatataaat gagaaggttt gcgctaggaa ctgtaaaaaa
      481 aatgcaatcg tttagctgac gggcctggcc tctatatcgc aagtgctgca caggggccag
      541 ggaaagccag gaacaagcct ggctgaaggc gctgccgtcc ctcacatcct tcaacatgca
      601 atcaatgagg caacagcagt caaggcttcc aagggccaag cttgttgctg gcatcaacag
      661 atgtttctcc tcctgccttg gatgcccctc tcctggctgg gctgggatgg accctgcttt
      721 gagcatcata ctcaaatgca gaggggcaac atgagccagg gtgcttggca caag
//
LOCUS       KCOD01001750             598 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 195272pyr ultra-conserved element
            locus uce-1774, sequence.
ACCESSION   KCOD01001750
VERSION     KCOD01001750.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 598)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 598)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..598
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="195272pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>598
                     /note="ultra-conserved element locus uce-1774"
BASE COUNT          185 a           92 c          116 g          205 t
ORIGIN      
        1 tttagagtct ttttctaatg tcattctaaa gttaaaaaac aatttgactt caagggagat
       61 acagcccaat tttttaaaaa cttaatagga ttagtcatgg gaactatttt tagcaaaagt
      121 tcaactttat ccatgtattt taatgtggga aaagtgtgtc cttttccctc tgctaatgtt
      181 tgatgtattc cagccctcct gcgagtgtgt ttgagtatct taggggctct ggagtggagg
      241 agaacttcct ctcggattct ctctgttttc tttcgtgaaa atgacattcc taagctgttt
      301 cactttctga caggaaatgg agccttgcca aaaatgatta aagtccaaga aagcataaca
      361 gttccaaagc tgcagcagtt ctttaggagt cccgagtttg acattgtgtc aaacaaatgt
      421 gaaatattgt ttaataaatt tgaataatac agggaaaggg aaaaatagtt cttggcttat
      481 agtgctggtg ctctttatta agtctgtaaa ggcttgccta gctctaataa attgaaatat
      541 atacataaat atacttgtgc atggataaca gtttaatatt gtaatatata atgaacgg
//
LOCUS       KCOD01001751             595 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 195379pyr ultra-conserved element
            locus uce-2748, sequence.
ACCESSION   KCOD01001751
VERSION     KCOD01001751.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 595)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 595)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..595
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="195379pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>595
                     /note="ultra-conserved element locus uce-2748"
BASE COUNT          183 a          124 c          113 g          175 t
ORIGIN      
        1 aaaaggaaaa acaaaacagg tagaattcct ctgttactat taacacctaa aaatatgatc
       61 atgaaacaaa agctttgctc ctctgtccaa tttgatgtct ttttcatgct gcctcagtga
      121 tggccaaata attggttgtt cacttgtgtc cttgtctccc ccgacagttc cacagatgcc
      181 ctgaacaatg ctccaaagac tgctttcagt aggggcaaat cctcattaat cattcctggc
      241 tgacagcaca agggaacacc tgcatctggc gcagggacca agcagtggct tctgggagcg
      301 tgcattaaaa agaccaacca attcaagttg tgggagtagg cttctaatag ccatgtgaaa
      361 aatccgtctc tcgctggatt ttcctttcat taaatagcta aaattagacc tgtggctcct
      421 gttgagatta aaacatcaat gtattgtaag caaatcagga aatgaacagt actgtatgtt
      481 atgataaatg gctgctaaat tctttatgtc tagatcaagc aatgttagca ttaaatactg
      541 atgaactgtc acataatttt catttagaaa tgactgcact ttgagcttca tgtcc
//
LOCUS       KCOD01001752             789 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 195489pyr ultra-conserved element
            locus uce-7534, sequence.
ACCESSION   KCOD01001752
VERSION     KCOD01001752.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 789)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 789)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..789
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="195489pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>789
                     /note="ultra-conserved element locus uce-7534"
BASE COUNT          244 a          193 c          128 g          224 t
ORIGIN      
        1 gtcataatct tttgcattta tattccctga gtctcaagac ataaaaccag tctgatctgg
       61 tataacactg ccaaatctgt ttcacacaaa ttctgcctgt ctcgcgagag agtgcacacc
      121 acgcatcctc attgaagata tgtaattaaa caagaaaggg ttaaagcata tgttagcctg
      181 ttctactttt ctatctatta ctttttaaaa gctttcatat gtcttcttcc ttgtttctga
      241 aagctaacca ttccttcttc ctttcaggaa ggctgacatt tgacagctta acatagctga
      301 cagggttacc caacagctca ccctccctat tctcaatcca attagacctc taatcctcca
      361 gatgaaaggc ccaactactc acgttcctca tgacaacgac agctattgat tatttgtcac
      421 tacagctaac accttctctg tcgaggccac tctgacagaa gcaaacctac caaattagac
      481 agcactttat ctgccctgga ggccaaatgg cacaacaagt aaaggctaat aaatggtata
      541 aaaatgaaca aatcataaca ttatgacagg ttgatcgttg ccagcagctt cacagctcaa
      601 gcttgatgct ctgttagacc tgttccttct cttttctctt ccactcctgc accaactttg
      661 actgaattaa aggccagaac aattaaggca tttgaccagc aaagataagc tgggatagaa
      721 gtatcatcaa gggacacgaa tgtcaatagc agactacggt ttgtcaataa aaacattcca
      781 gagatgcaa
//
LOCUS       KCOD01001753             487 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 195601pyr ultra-conserved element
            locus uce-4573, sequence.
ACCESSION   KCOD01001753
VERSION     KCOD01001753.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 487)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 487)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..487
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="195601pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>487
                     /note="ultra-conserved element locus uce-4573"
BASE COUNT          149 a          104 c           88 g          146 t
ORIGIN      
        1 cctgttcgat taaaaagccc gcgccgtgcg agtgcagaac gctaaacgag cgcaattaat
       61 gcctttgaaa caatttatga tttccggcct acttcaacat gtattagcat atacctggtt
      121 tccttaatat acactttgtt tttccaaaac cacaaacata gttgctggaa tttcatgtgg
      181 aagtgcttaa ggggttgaaa gttaacacct ttgtgagccg agcagtctca cagttgctgc
      241 taaacaaaag cctctttgta gaagctttct cgaaatgttt tcttaacatg ttccaagtag
      301 ttttaggcag gcaactaaag taaacaagat gttaccatga taaaaacact tgtgaaaaca
      361 ttacagagtg cacttagtag tttctttcac ataaactccc cttcgaacac aggactgcca
      421 gatctcaggt ctgtgtcctt tcttttaaca tttgatttaa aaaagccagg attaagcacg
      481 tctaacc
//
LOCUS       KCOD01001754             490 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 195706pyr ultra-conserved element
            locus uce-3678, sequence.
ACCESSION   KCOD01001754
VERSION     KCOD01001754.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 490)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 490)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..490
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="195706pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>490
                     /note="ultra-conserved element locus uce-3678"
BASE COUNT          115 a          134 c          106 g          135 t
ORIGIN      
        1 ataacaaatg actgatacag ggagaggaac cagagcgtct gctggcgtca ccctccctcc
       61 ctctctccct ccctcacgct ctttcctcct cgtgtaattt gcattaataa agaggctgtt
      121 ccttgtcgga atgtgtttca tccggtttaa aatcccaggg cgatccacca ggaacagctc
      181 tgggagaatc cgactgtcag agccgacaag acaaatgaat cccggtgtca ggagcgtgtg
      241 gttcaacgat gacagattga gaagaactgt ccccctctcg acaggcgggc ttcattttca
      301 aattaataaa tctgaataaa atattttccc tttcattacg agccgagccc ggatgacagt
      361 tcccgtgaca ggagggagtc gcagtgttga tgaggagact ttgcatgaat tccacctggg
      421 cttcttcggc tttattttta cctgcaatct cattcctgtt tctctctctc atgctcccct
      481 tacttcaccc
//
LOCUS       KCOD01001755             799 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 195821pyr ultra-conserved element
            locus uce-2698, sequence.
ACCESSION   KCOD01001755
VERSION     KCOD01001755.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 799)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 799)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..799
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="195821pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>799
                     /note="ultra-conserved element locus uce-2698"
BASE COUNT          232 a          189 c          136 g          242 t
ORIGIN      
        1 gttaggttga aaatacctac ggcaattctt ttcaaagctg ctcctcccta catggtaatt
       61 atccaagtgt tgtcttccac attggctcct ttactttgtt agtaaaacgt gctataatat
      121 cctactgccc aatcctcatt aatcttacac actgcacagt aagctgttgt tgagataact
      181 ggcttccatt agcaaccatg tgattggcag gacgataaag tcttttccct tgcaggtcag
      241 ctgcttttta agaagagggc aatcctgctg atccatcttt tagctacagt ctctcactga
      301 gtcccaaatc tcctgccttt tagctttgat acggttcaag ctttccccct tgtatcagcc
      361 cctacctgtc atcagctcct ctgtaccaaa cagccaatat caggagtttg acctcagggc
      421 acagtccggg tgggcaggta aaacctgacc actggaccta cttccttatc tttcatatcc
      481 tgcaattcat gaagaagtat caaattcaaa ctaaaaaaca gaagcatgac cttttataag
      541 aactttttga aaaaggctct gttgcctttc taagtattct tgaaaagaac tgtcatctac
      601 cctattaaga cagaaatgga tcacaaataa ggagaagaga gaaagcactg aaaatcctta
      661 ctaaatggta ggagtttttg atgtatgcct gcaatacctt ttggtgatgc acacatcaca
      721 tatacctaca tctgcaaact ccagttgcaa tccagtaaag agttgcccaa acttctcctg
      781 tttataaagt atcttaaat
//
LOCUS       KCOD01001756             689 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 195930pyr ultra-conserved element
            locus uce-7473, sequence.
ACCESSION   KCOD01001756
VERSION     KCOD01001756.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 689)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 689)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..689
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="195930pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>689
                     /note="ultra-conserved element locus uce-7473"
BASE COUNT          230 a          119 c          128 g          212 t
ORIGIN      
        1 gttcagaata tttctgccta acaattaaat gtatttttca catttccagt aatatttaaa
       61 ctttaagccg ctctaattaa gacaaatcat taaatttctt cctattgcca gctttaaagt
      121 ttatttgcta ataagcaact ggacaaggga tgtgtgaaat gaatagttga agaaaaactc
      181 tgacagcaaa agagaggtct ggagggtgaa gttggtttat taggcaccgt ttgtcatgaa
      241 tgggtctact gcacgtacaa aagcaaatcc cactacctta gaagattaat tctgaaggag
      301 gcactcgtgg gtcaaagtat acataagcgt gtgcctaatc tcagagaaat caggctattt
      361 tctcacagca attaagcaga ggtctagggt ttcacccaca gtgtatttaa acacaggata
      421 caattaaacc ccaaagtatt aatatctgtg ctgtgcaaaa ttgcccagga aatagatttt
      481 gcactctttc aaatggaaag caaggcaaat taaggagggt gactttattt gagtaaaaat
      541 tatcctgaaa caaatgtaag tcattcataa ctgttaattc cttatgtaca cctttttcct
      601 gctcacgtaa tttactctgg aatgtgctgt tcagtggata taagcaatca ataccatctc
      661 atgaaaatag ttttgctttc agggataat
//
LOCUS       KCOD01001757             743 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 196042pyr ultra-conserved element
            locus uce-3995, sequence.
ACCESSION   KCOD01001757
VERSION     KCOD01001757.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 743)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 743)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..743
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="196042pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>743
                     /note="ultra-conserved element locus uce-3995"
BASE COUNT          212 a          175 c          137 g          219 t
ORIGIN      
        1 tcataatggt ggtagcacaa attagtcatc taatcacatc tcagctctta accaggatac
       61 agaaccacag cagtcaaaac accgacaagc cagagagccc caacacctca ccagccaggg
      121 ctgctttgca gtcacaggca ttttaagcaa caaggacgcc tgaggtgtgt tcttgccctt
      181 caccttcagg aggggattat gtgctgctcc acattggtgt gcatccaacc atacttcttt
      241 gtagatctct tttcttcttt ggaagcaaac tagaagcctg cattagcatg ctgtattttg
      301 ctctcaccac tagaaatact gagggtgcta tttgtaattg tattctttta agaggtttgt
      361 tctctgcagc tgttttctgc ttgcagtgta ttttgtgtaa tcagcacatc atcataaata
      421 cattggctgt tcccccgagg gaagctgtca ctgtttaatt tacagaacaa cctggccaat
      481 gtgaattcta acactacagc actatggcaa gaagttacca cactcggaaa aacaggtttc
      541 tatgaatttt tatatcaaga gctggtccca ggacaattta gtttctagaa atagattgat
      601 tttaaaagca ctttatacac tggatggaat agattctttc ccatttacag cctcttaagg
      661 cagcaccaaa ttcactccca cattatttta aaggtgacac tctcacatga ccatcttcac
      721 tggcttctac caaaagaagg cac
//
LOCUS       KCOD01001758             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 196149pyr ultra-conserved element
            locus uce-5457, sequence.
ACCESSION   KCOD01001758
VERSION     KCOD01001758.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="196149pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-5457"
BASE COUNT          175 a          116 c          168 g          175 t
ORIGIN      
        1 tccataattc atgaggacgt tgtgttccca accggcgccg gggtcgtctt cattacattc
       61 tttaaattgt ttaaaaatat ggtacattat aaatgttgga agtaccagca agagcaaatc
      121 acagccttgt ccaggggcta ttcttgctct gcctgagcat cgggaagcca aagcatatgt
      181 tggatgttag ccggggtgta cacaacgtgt cctatttatt caaggtttgc tttgaagcca
      241 caacttacaa gtttgtttct tagggggaca tgtcagactg catttagcat ttgttggtat
      301 taggatactc ctgaatagca aaaaggcaac aggggggaga aggcggctgc tatctgagca
      361 gggatctgtc agatccagtt aggggctccg ggagaactgg agaggaggca cagggagagg
      421 ctgggctgag ctcaggatct cgggcaggat tgttctaaag cactttaaat ggaagaatta
      481 atctccattt aaattatatg gagttcatta tgataagaac taggaaaacc attaaagcag
      541 ggatccagct ggccagagtg tgtcaatgta aagtgttcag caattccaag tggcacggtt
      601 ctctttagat acattatttt aggtgcttgc aggc
//
LOCUS       KCOD01001759             569 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 196259pyr ultra-conserved element
            locus uce-6912, sequence.
ACCESSION   KCOD01001759
VERSION     KCOD01001759.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 569)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 569)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..569
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="196259pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>569
                     /note="ultra-conserved element locus uce-6912"
BASE COUNT          183 a          107 c          113 g          166 t
ORIGIN      
        1 gagaaagaga gaaagaaaca gaagatcaaa agagagcttt tttttccctt ttgcttttca
       61 tgcctcagaa cctcaaagga ggtcggggaa caatcaggct taggggtctc gtgtgctttc
      121 tggcaattag actcagctga tgggctgaaa gggattgaat ggcagggttc aaggcccttc
      181 tccagagctt cagacaacag gcttttccaa agcagcagag cagcagacac cactgaaata
      241 atttcaaatg gagacttaca gccagggatt cattaattca ccggcctaaa caattactgg
      301 aacatataat gtctctatat acactttgat aaagactgtc atcctagacc ttcattttcc
      361 ccatttttat tagagatttt taatgtcggg tttgaaaaga accttttatt tcttcaatta
      421 tcaaattaaa ccttttatat aaattccaga atttttgttt tatggctaca attgatttga
      481 attacaagag gagactgaga aagttttgta aagcatcctt aaacactcag tcataaatag
      541 gatgggagcc tcagtagcaa gagatccca
//
LOCUS       KCOD01001760             529 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 196365pyr ultra-conserved element
            locus uce-6964, sequence.
ACCESSION   KCOD01001760
VERSION     KCOD01001760.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 529)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 529)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="196365pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>529
                     /note="ultra-conserved element locus uce-6964"
BASE COUNT          153 a          105 c          134 g          137 t
ORIGIN      
        1 ggattcctgc aaggaagctc ctgcaaagca acaggctgca gcctcttcct ttgcttggat
       61 ttaaatgggt aaattatttg aatttctcca cccccaggtg aatgatttag atggccttga
      121 ccccaggctg actgcaggga ttaatgtggg ataatgattg ctgaggctat cattgcagca
      181 ggcatcatta attatcctta ttgattggag ctttcaaaga taaagcatta tgctgactgg
      241 aaaataccct cttcctgcaa ggtcaaggct aaaacagggc agctaaataa ttgcattaac
      301 aaacaaagaa ataaaaataa cctctcgcag agttgtgtaa ttaagatcca attacagcat
      361 ttggccgtgc tggcggagcg gccttgcctt gtgtgggatg tgggatagag gagggggacc
      421 tcatgggatc ctgccaggtt cacctgcagc cctgttggaa atactcctgg gatgggaaat
      481 taaaagagtc agatggagaa aatgataaat ggcccacatc actttgggg
//
LOCUS       KCOD01001761             593 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 196470pyr ultra-conserved element
            locus uce-2517, sequence.
ACCESSION   KCOD01001761
VERSION     KCOD01001761.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 593)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="196470pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>593
                     /note="ultra-conserved element locus uce-2517"
BASE COUNT          183 a          115 c          106 g          189 t
ORIGIN      
        1 ccccttgact atatcctcac tgcaattttt atcattaggt gttaccaaca tggaaacttc
       61 agcttatgga gggtttgtgg catataaatc ttggcttctt ttttaattgc gaagaatttt
      121 gacgattatg tagctgatct tgcaaattca aaaatattca gtactttaat tatgcttact
      181 ttatttaagt gctaaaggcc acagcaggcc tgcaattgct agcatgctaa cagcatataa
      241 tacagccaat tgcaaacagc agtctaattt gttgatttca actgaggtgt aattatattg
      301 cttcatttgc tgagcaaatc atacgagagc ttctctaaat cagcctgatt gtgtaatgaa
      361 gagctaatta caaacagcag tgttcttgca gtaaatttat ggtgactgct aatgccaggt
      421 tggcaccact atgacaatgg ctcattagta catttacaaa agcaacagtg gaattctgcc
      481 caaagcacag caactgttcc ctatttcagg agatgagagt gattaactct ctcccttcca
      541 ttgttactac aaggaattat acacttctag aaaagtctgc cataagacag aat
//
LOCUS       KCOD01001762             686 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 196578pyr ultra-conserved element
            locus uce-7342, sequence.
ACCESSION   KCOD01001762
VERSION     KCOD01001762.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 686)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="196578pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>686
                     /note="ultra-conserved element locus uce-7342"
BASE COUNT          197 a          148 c          133 g          208 t
ORIGIN      
        1 tcctctgttg gtgttacacc ctttacccac tttgttttca ctcccaccac tatttaatat
       61 ttattagttc tttcagttca agaggagatg cagatgctaa tgttagtcat tttttagaga
      121 tggaattgtg ttgtcagcat gcttgcagat gatgcctatc gcctctcaga gcgctctgac
      181 tcaggcagcg tggaaacagg ttcactcttc caaggagcac tctgcataat gaaattcctg
      241 ggctgactgc acaataagtg cttttgcttc atcacagtca tgctttctta catcattaca
      301 gttaaatttc caggcaccaa aacctacatt gaccctgaaa cctacgagga cccaaataga
      361 gctgtccatc aattcgccaa ggagctagat gcctcttgta ttaaaattga gcgtgtgatt
      421 ggcgcaggta aggctgccgt ggcttcctga ttcaactgtt ccatttagcc gggatcgaaa
      481 ctcatacatc ataatgacag gcaaataatt atacctcagg tatagaagaa ctttctgcat
      541 ttgccagagt ggttaagagc aatgaagctg cactcgcttc tggaaaagcc caacaaaaac
      601 taaaataaat tagtaaatta aaagtcttgc ttgacattga aagcttacag gtttttaatc
      661 atgtatctgc tgttaaaatt ggaatt
//
LOCUS       KCOD01001763             677 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 196689pyr ultra-conserved element
            locus uce-6117, sequence.
ACCESSION   KCOD01001763
VERSION     KCOD01001763.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 677)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 677)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..677
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="196689pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>677
                     /note="ultra-conserved element locus uce-6117"
BASE COUNT          228 a          134 c          104 g          211 t
ORIGIN      
        1 agtgcctctg tctctcctgt ggcaaccaaa taaagttgcc aaaattattt ttaaataatg
       61 ataaagtatc taaaccaaat actgtataga aaaataagga atatatcagc atttaaaatg
      121 tatatgctgc tgagcatttt tactgtcatt tctttaagaa aagcagatct aattagctgt
      181 atctccaaag tgtgtaccta gcatttttat tatgtattat aacattttgc ttagagttga
      241 catttttatt ctgacaagga ctgtctggag agctctcaat aaataataca tttacaattt
      301 tcagtaaata agcactggac acaaatcgtt atccttactt acagctgccc ctctctaata
      361 gtgcttttac aagtaaggtg actattcagt ctaatgcaat attctcagtg ctgggaagat
      421 attttcattc attaccccag tcacaagcac ttaaagcact tttaggccct gttgcaaaac
      481 agcaggaatg gaaaagcaag taagaccaac taaaactaaa gtccatcacc aaagaaatct
      541 gagaccattc accctccaga tcttggaaaa taatggcata cgagatcagc catgtttgag
      601 ccctatcctt acatttacgc tggcaatttt aggaagggaa gtatcccatc tagtcccaac
      661 tattatttcc atttcaa
//
LOCUS       KCOD01001764             556 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 196801pyr ultra-conserved element
            locus uce-7364, sequence.
ACCESSION   KCOD01001764
VERSION     KCOD01001764.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 556)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 556)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..556
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="196801pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>556
                     /note="ultra-conserved element locus uce-7364"
BASE COUNT          211 a           89 c           90 g          166 t
ORIGIN      
        1 catgctcatc ttaagttgta actgagaatg tcccttcttt aaattaaaaa gggaagtcta
       61 gactttaaat gagaaaaata catcaggctc caaaaagcca ctttcatttt catataaata
      121 tgtaaccatc atttgtttaa ctcacaccaa gctatcaaat tttgtggtgg gctataaact
      181 tgttgagtca ttagcctggc tgcttaatgg aggaaaacta aatttctgtt cctgcataat
      241 gacacttatt cactgtagac atttgcatca cttggaagcg ataaaacctc atccttcata
      301 atgaagttct gagctgacaa agaggaaaat atagtgttgt gggacaacta tgaatataaa
      361 acaagcttaa taaagaagta gtgacaaatt atattatgca aaatgcaatg caataaaaaa
      421 atgttactaa ctcattggaa atgtcataaa taatctaaat agtttttaac tgtcaaagcc
      481 ttgaaaaaaa aaaaatgaga tacagaatag atgccagttt aattgccacc atattttgac
      541 aagcatggag agcctt
//
LOCUS       KCOD01001765             443 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 196906pyr ultra-conserved element
            locus uce-2955, sequence.
ACCESSION   KCOD01001765
VERSION     KCOD01001765.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 443)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 443)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..443
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="196906pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>443
                     /note="ultra-conserved element locus uce-2955"
BASE COUNT          124 a          111 c          100 g          108 t
ORIGIN      
        1 gccaacctgc cttcccctac tccagctctg cattgtttac ctgccaggag ctgggctaaa
       61 gccctgggga gagcaaaacc tgtttgggtt gacattgagt atccttggtg cagcaagtca
      121 ggacctcgga ggtatccatc attctggctg cctggaggca ggctggagcc aaggaacttg
      181 cctgagcagc tagtaaaatt ttaatgcact ctgtagtgtg gtcatgtcat actcagttat
      241 ggcaaataat cccagatgcc tgcagaggta aaatggagct gtaatgtgct tgcctcctaa
      301 cccgagctga cagcaatgat gtacgactac cattagcgga aaatatcact tcaactaacc
      361 catgatccag ctccgctaag ggtcacatta tccatgagga acaaattaca ctcccaaagt
      421 aaatacaaat tttctacacg aaa
//
LOCUS       KCOD01001766             344 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 197014pyr ultra-conserved element
            locus uce-2165, sequence.
ACCESSION   KCOD01001766
VERSION     KCOD01001766.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 344)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 344)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..344
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="197014pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>344
                     /note="ultra-conserved element locus uce-2165"
BASE COUNT          106 a           64 c           57 g          117 t
ORIGIN      
        1 actcatcaaa agcatcctaa acttatcgtg acgggaactg gcttcttata tgactgtgac
       61 agacctcaat gtgacacata atggtatgta accaccatca aggcaatttt tttttttgct
      121 tacccatcat atcttttgcc ttcttgaaat gtttatacca ccttccaaat tcctgacatt
      181 ttgctgctga gacatttgca tagtaagtgc tgttcacaat ggaagaaatc atactctgtg
      241 tgaaaagggg agaagtctgt aatacagagc agtgtaagtc aaagcacaaa ttattttatt
      301 gttgccatta tatttttaaa gtttgagaac catattttta aatc
//
LOCUS       KCOD01001767             551 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 197120pyr ultra-conserved element
            locus uce-7609, sequence.
ACCESSION   KCOD01001767
VERSION     KCOD01001767.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 551)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 551)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..551
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="197120pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>551
                     /note="ultra-conserved element locus uce-7609"
BASE COUNT          159 a          105 c          128 g          159 t
ORIGIN      
        1 tccctaaaga aggaggaata ttaaaatttc cttgctgttc tgtctgagtg gttaatgagg
       61 ttctagatag cataatgaat atgcagtgct gttgatgtgc gtttgtgttt taatcacagc
      121 tggaatgcaa aatcaggctc cacctttcaa ctctatctcc atcatgctga gagagtgaga
      181 gagagcgaga ctgagactgc tagacagctc gaaagagatt gcagctcaga tgtcctggaa
      241 aacagcaaat ccctcagacc tggcagattc cgttaccatg agaactgcag atatttccat
      301 tgtgatggct tgctctagca gccatctgtt acacccattt gattaggaag tacagttcag
      361 cttgtatggg attttcactg caccttatcc catggcagag tacagaaact ctctctctct
      421 ttttatatgc taaactcaat gtttttaaag tgctgtaatt tactgaggct gaaggcattt
      481 aatgaaatgc tgggaggagg tcactgaggg acagtatctc tgagaagaaa gaagcacatg
      541 agatatgtga a
//
LOCUS       KCOD01001768             425 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 197225pyr ultra-conserved element
            locus uce-2129, sequence.
ACCESSION   KCOD01001768
VERSION     KCOD01001768.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 425)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 425)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..425
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="197225pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>425
                     /note="ultra-conserved element locus uce-2129"
BASE COUNT          146 a           67 c           79 g          133 t
ORIGIN      
        1 ggagattgtc ttggtaactt gtatttagat aagaaaggga aacatgggag ctctagtctc
       61 ttgagctttt cctaggtacc tactaattgt taattattag agactaacta agtcactgaa
      121 gtgagtcgtt tggctggtgt ctcaaatgct gtcatttact actacacaaa tcagcctagt
      181 gatagagtgt ctttaaatta ggttacaacc atgcagttat tggacaggga gtaattgata
      241 aaaccattag taacacttgt agagataaca gctagcaaaa tcatgcaacc ataattattc
      301 ctaatggata catgctataa attgtgtcaa gaaaaaaaat cttgcattat ctttcaatca
      361 aatttgacag tcctggtaga ttactgtaga ctaaatgctc atgtataaaa aatgacctat
      421 cagaa
//
LOCUS       KCOD01001769             600 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 197335pyr ultra-conserved element
            locus uce-4792, sequence.
ACCESSION   KCOD01001769
VERSION     KCOD01001769.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 600)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 600)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..600
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="197335pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>600
                     /note="ultra-conserved element locus uce-4792"
BASE COUNT          152 a          115 c          122 g          211 t
ORIGIN      
        1 attactgtgt aatgaccagg aaagagattt tatgccacta aattttggat acaggcattg
       61 ttggctttgt ggcaagtact gggaatactc aaactaaaaa atgaaatatg tcacagatga
      121 ctcagtttgt tttgttttca tcccagagcc taattcagta gatttatctg ctacaattac
      181 agtgctttga tcactccaga ataggtggtg tagtgtgggg tgtagctgtc cttttccaat
      241 tcgctctcct tatcaggata catgtctgtt gatttgtggg aagctggctg tttttcgttc
      301 ctgacaaact ccagtgatta aaatgtagtg gcttgctctt gttcccctga taaaggtgac
      361 agctgcagag tttccagtgt tagtggatat ggtccatgca gattgctttt taatgaaagc
      421 aatatattat cttacctaga gaccctgcag ccttaccttg ttaatgtatt ctagcttggc
      481 accacattca tctataaatt agttgtatta aacatgcttc ttactattta tccagtctct
      541 aaagagttgt ggttcttttg gttgggtaac tttgcttcac acctcctcca gcagcaccat
//
LOCUS       KCOD01001770             838 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 197443pyr ultra-conserved element
            locus uce-940, sequence.
ACCESSION   KCOD01001770
VERSION     KCOD01001770.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 838)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 838)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..838
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="197443pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>838
                     /note="ultra-conserved element locus uce-940"
BASE COUNT          252 a          155 c          134 g          297 t
ORIGIN      
        1 atgtactatc aaaaatggat tgcagaaatt caaatgtgtt tgtaaatgtc acttcagatt
       61 aaccttgcag tataatccag tatgatccac attacttttt taaatgatgg ataggttacc
      121 atccaaatta tttgtaagac ataaatgacc attgtatgtc tctttgaagt cagagaatgt
      181 attctgtatg actcaatcat taaatcatct tacaaatgtc taacaaagca cctgcattta
      241 accatacttc ctatatttac atttttggcc tctttctaag atcaggcata aatccatcag
      301 gccactttag aacttctgaa cttccttctt ttacatatat actgctcatt atccagaagt
      361 tattctgtcc cctgtgttaa attactttat gctgcagctt aaacgaacat gtcttgcttt
      421 catctggcat ttcaaatagg gcaaagactg ctgtacaatt tccaaacaca actgtgctaa
      481 cagagatgaa ttactacagt ttatataatt tatattagga attcatagac ctagcaaaag
      541 ggattagtac attttatttc agggtaggag atgatcctgt cattaatggt cgatactttc
      601 atcatctttt aaacctgagg aatttcctgg gtgacaagac tgtaaggaca tatcagggat
      661 tcacagctgt gagctttatc tggccttgta ctgctttact ttcagtatgt ggactacgtt
      721 ccatcaaaac tggattagac tgtcaatcat gtcctgcaat gtatattgta ttatgatttt
      781 ttgaaaatgt cactgagatc agagtaattt cttggctaat tgcatctcgt ctcttctt
//
LOCUS       KCOD01001771             345 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 197547pyr ultra-conserved element
            locus uce-4198, sequence.
ACCESSION   KCOD01001771
VERSION     KCOD01001771.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 345)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 345)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..345
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="197547pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>345
                     /note="ultra-conserved element locus uce-4198"
BASE COUNT           58 a           79 c           46 g          162 t
ORIGIN      
        1 tttcctttgc agtttctttc tgttcttggg ttctccaagt ttcatgattt tttgtatgtt
       61 ttgtttcttt aacttgcttc aagctgctca tgttgcccat ccccttcccc acacacccct
      121 cctcccttac actcctgttt tcacttgtaa attctttctg tatcacataa ctatatgatg
      181 ttgagttgct gtttgtatga tttttctctt aagttacatc tttattatat tttagggccc
      241 agggatcatc ctgatattgt tgattcattt atgcaactcc tggcacaggt gtgttttagt
      301 ttcttattca ttcactttct gttctctctc tttctctttt taatt
//
LOCUS       KCOD01001772             762 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 197652pyr ultra-conserved element
            locus uce-6347, sequence.
ACCESSION   KCOD01001772
VERSION     KCOD01001772.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 762)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 762)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..762
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="197652pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>762
                     /note="ultra-conserved element locus uce-6347"
BASE COUNT          208 a          178 c          233 g          143 t
ORIGIN      
        1 aggtgaagca aagtcttttg agaaggccaa ctgcccctct tgcccatttc cacaccacac
       61 ctctacacta tccaaagaag atcaggtgag gaacatgctc ctcacctctg agcaaggagt
      121 ccttacctga gaagaactgg ctgatggagt gaggcagaag agtgaggaag gccagtgggt
      181 ccgcaaagga catggaaagt gtagcagaaa tgtaagccat gcctgccacc agggagtcaa
      241 ggcaagccag ggaggtgtag aggcagaaca tgatgaagtt tcgcatgttc ctgctcccga
      301 tgcagttccc tgtgaagaaa cagtggtggt catgcctctg ggtgactctg gcacacagtc
      361 tacagaagtg agtgcagggc aaggctgagc caggggacct gtttccatcc agccagtctg
      421 ccatttcggc tcctttgccc aagtttaagt ccttgcccaa gtcctcgggg gagctctgga
      481 tcacaaggat gtagttgccc agggcattag ctgagaggaa gaggaagagg gccccatgca
      541 gcagagcagg cgagaaaagt ggggtggtgg aagggtctct gaacatgctg gggatgaaga
      601 caaagatctg gaggacgaag gtcactaggg agatgcacaa gaagtaggct ggagcgacaa
      661 cattgagcaa cctgagaact agcattgcgg attacgttcc tgcgggggaa agcaaggaga
      721 gaaggaacat caccgctccg gctgcacact tcatccttcc at
//
LOCUS       KCOD01001773             729 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 197762pyr ultra-conserved element
            locus uce-4586, sequence.
ACCESSION   KCOD01001773
VERSION     KCOD01001773.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 729)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 729)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..729
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="197762pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>729
                     /note="ultra-conserved element locus uce-4586"
BASE COUNT          214 a          126 c          172 g          217 t
ORIGIN      
        1 cattcgtcct cccagcaaac gcttgtccta aactgagcac cgtagaataa aaatggaaac
       61 ataaaaatag cagttggaaa gataaaacag catttatagt actaataaaa ccgttgtggc
      121 ttccacagga aaacatgctc tgtaacctaa tgcttacctg ggaagactgt cgagtttcgg
      181 agagttatag ctgtttttgt aagagaagca cagagatttg cttcagggct gagtgataga
      241 ttctcctgcc tggagcatcc cagtgtgttt atacatggct tgtatggcag ctttcataag
      301 acatttaccc catgatttgc gatgagctta tgtgtgaata attaatggca attaatcctt
      361 aattacagta attaggcaag tcacaggaaa ttaagctgca gctggagaag accatgcctg
      421 ggaagagagg attgggggct gtgtgaatgt gccattcact gacaacatta caaggatgag
      481 cagcattcag cagctttggc atttctattg gcagccttgg gtaggacaag aacgctcaac
      541 attagcagca atctatagtt gtctacaaga gtttttagtt caagtgccaa aatgttatgt
      601 tgcatatggt gattatctaa gtttattggt tgccataatt caaatgggtg taattgtttt
      661 tggcttgatg gtgacattag aaactgaagc ttttatgtgt tcgtaggttc tgctggcatc
      721 agccatggt
//
LOCUS       KCOD01001774             700 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 197874pyr ultra-conserved element
            locus uce-6909, sequence.
ACCESSION   KCOD01001774
VERSION     KCOD01001774.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 700)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 700)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..700
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="197874pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>700
                     /note="ultra-conserved element locus uce-6909"
BASE COUNT          213 a          121 c          152 g          214 t
ORIGIN      
        1 cttcatggat cttaagtgtt ttaaattaaa cagtgcttac actaatactg ttaaattagc
       61 tatgaaaata attcatgcaa gttgccttta attaagtgcc agcgatttat ttgtttgttt
      121 ctcttttgcc aggaaaagaa gaatatattg cgacattcaa gggatcagaa tacttctgct
      181 atgatttatc tcagaacccc atacagagta gcagtgatga aataactctg tcgtttaaaa
      241 cacttcagag gaacggactg atgcttcaca caggaaaatc ggctgattat gtcaatcttg
      301 cactgaaaaa tggagctgtc tccttggtca ttaatttggg ctcaggggcc tttgaagcgc
      361 tggtggaacc tgtgaatggg aaatttaatg acaatgcctg gcatgatgtg aaagtaacca
      421 ggaatctgcg tcaggtaaca gtacaatgga tacaagaata actgactttg ttatgagtaa
      481 atgcttgata atttgttgga tgtttagcag gcatttggtt tatttgcaca aggaaggata
      541 ttcctgccac acttgagcag gggcatatct agaaagtagt agggcaagca gctgtcgaga
      601 cagtaccttt tcaagactgt actccagtac aactgtctgc ccttgcagcc ttgcattagt
      661 caaggataat gaattgcaac tcgaaatgtt taatatcttt
//
LOCUS       KCOD01001775             623 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 197983pyr ultra-conserved element
            locus uce-5581, sequence.
ACCESSION   KCOD01001775
VERSION     KCOD01001775.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 623)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 623)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="197983pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>623
                     /note="ultra-conserved element locus uce-5581"
BASE COUNT          212 a          123 c          110 g          178 t
ORIGIN      
        1 ggcatagact aagaatttgc taagggtatg ttttcaaagg gaatagctgt tgcttgttca
       61 tggcttaaac attatactat gccagtaata aaataccagt gatgcatgca aatggaaaat
      121 cgtgctgcaa aaaggttaat tcctttggaa gaaaccaagt ccctggataa aaagcatatc
      181 tcagccacct gactaacaca cagacatttc agtacagttt tattgtgtac aaaaaatcta
      241 ataatacccc gcttttttcc ctaagattca gcaggtaaaa gctctgattg aatttcatct
      301 tgatttcatt aaatattcat aaaggccaat tagaagggca gctaagtagg ccacaaggct
      361 cccttccatc atcctgtcaa aggcagtcca tcagacagtc ctgtttgcat tagggcctgt
      421 agtcaatatc ttcattcaat ctttatgtag tatccctcta aatcactgct ccatcccact
      481 ttacagcttt tatggacaga caagggggga aaaaatctaa taattctgaa ggcaagatgc
      541 ttactcggta gaaagcaaaa tgcaaatgag aaaaaacatc ctcaatcaaa tgttggaatg
      601 aaaatctttt ctttaatgag caa
//
LOCUS       KCOD01001776             531 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 198091pyr ultra-conserved element
            locus uce-3345, sequence.
ACCESSION   KCOD01001776
VERSION     KCOD01001776.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 531)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 531)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..531
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="198091pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>531
                     /note="ultra-conserved element locus uce-3345"
BASE COUNT          151 a          109 c           96 g          175 t
ORIGIN      
        1 atgaagaagt ggaaattgag ttttctgttc ttgtgctttc ctagcattca aagagatagc
       61 aaatattcta ttggttaaca tttaacccaa actaataggt ccaatctcac atactcaaat
      121 aaatcataat gtcttttcaa ttagtttgca cttttgctcg ctgctgtcct gaataattag
      181 gaaaacaatt cacatttcgc taggagatga tatgaagtgt tattcctgtg ataattacca
      241 agctgcagtt cagtttccct ggctcccacc aggtcaccag ggcacaaaag aggacaccat
      301 gagagcatta atgagctctc attgaagatg ttaaaaagct tgtattgatc tgtttgtcca
      361 agaaggagat atttaagcct ttctgctgag ggcaggagag acagagattc atatcacaaa
      421 gccttttatc caaccccttc tgtttctggc ttcagtattg cccagtctca gcatgtctgg
      481 ttctggaggt catactttta aactttcaca acattctttt tctctttctt c
//
LOCUS       KCOD01001777             770 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 198202pyr ultra-conserved element
            locus uce-4998, sequence.
ACCESSION   KCOD01001777
VERSION     KCOD01001777.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 770)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 770)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..770
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="198202pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>770
                     /note="ultra-conserved element locus uce-4998"
BASE COUNT          250 a          126 c          125 g          269 t
ORIGIN      
        1 gctttataaa gcattaaagt tctaagtatg tcacatggga gctataaggt ttaaatgaat
       61 aaatgtattt aatgcataaa atgtctaggc taatttttta attcctttac taacatcttt
      121 tattgaaaaa ccatacttta ttcatccatc ttagttatac tgctgtggtt gtggtaattt
      181 aatattcctg ctctttgcta atcttctggt tcaacagaag taaacaatag gtttcataaa
      241 ttaaaaatac gctcctcaga acatgcttct aaagataaaa aacaaggctg taaacattta
      301 tgactgaaac aaactagatt gttcaaatac tgccatgatg tatcatgtat atcaatatgg
      361 cactgatatc agttagaatg caaacaaggt tttaaatgat gtgccccttc atttcagctg
      421 gagaatccgc tttacaccat ctgcctatca gatggttagg aaccaggact gcgtattaat
      481 gccacatgtt cgattttcat tcctcttgta atggttagat tcatattgct aatagctgtg
      541 catgagcact gtcgatgaaa tttgtgtgac gatggagtga tgagatattt ataaagctgc
      601 ctgtctcact gcataatcag caggaagaat gccagacata aacaacttat caatttcaga
      661 atattaatga caactaccat tgactttaat ctcttgaata ttttggcctg gataaaataa
      721 atatttttaa agaatctgtt tagtgtgatc cttatttttt catttcagtt
//
LOCUS       KCOD01001778             751 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 198314pyr ultra-conserved element
            locus uce-6320, sequence.
ACCESSION   KCOD01001778
VERSION     KCOD01001778.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 751)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 751)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..751
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="198314pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>751
                     /note="ultra-conserved element locus uce-6320"
BASE COUNT          246 a          128 c          169 g          208 t
ORIGIN      
        1 tgtgtttctg aagctgtgtc tgtgcaatta cccaaaacaa tttaaagaac taggcagtct
       61 gattcccatt ttgagagaga gctggcataa aaagatagac tacagcaatg tattattctg
      121 attactttcc ttgtgtatca ggatcagtcc cctcgtctgt ctggtgagga gtcagagaaa
      181 aacagaatag atgaaatatt aaatgctttc agaaaatgag ggggaaagtg caccagcttt
      241 taaagagaag cagcatgtat catttctgct tccattggct gtttatccaa catcaataca
      301 acactttagg agccaaatta ctaaacaagc tgccaattag gcttgcagtc agctggatag
      361 attagtggct aagagaggca gatacaagat tttcatctct tgagccaatt acgcaagtga
      421 attaccatcc acaatgctcc ttggaagatt tgaggtagaa agactggctc tgctgtgata
      481 gacataagtg agatccaggg tagggggtta gggttagcag gccatgcatt gcaaaaatta
      541 cccaagcaaa aagagatcct tctaggaaag gatttaaagg atttaaggct gctgggagcg
      601 atagaagagg aaataatagt tgtggtatgc taaggcattg ctgttctgct cacaagtctt
      661 aatcatataa aagaaagatg aaagggcaag actatattta tgtacagtgt cattttctca
      721 gaactgttta aaaccctttt cttaacatca g
//
LOCUS       KCOD01001779             320 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 198417pyr ultra-conserved element
            locus uce-4869, sequence.
ACCESSION   KCOD01001779
VERSION     KCOD01001779.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 320)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 320)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..320
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="198417pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>320
                     /note="ultra-conserved element locus uce-4869"
BASE COUNT           82 a           63 c           75 g          100 t
ORIGIN      
        1 gcagagattg catctgcctt taattactcc ctctctacat atcagatgct cgtgcacctt
       61 ctgcacatga atgctgatta attgcagggt taggctccga ggcaggccgg accacattat
      121 ttctgatgtt tgctcttttc acgaggagaa taaatgccat gaatccacag taatcagtgg
      181 cttttagctt gtcactctta tgacactctt tacttagacc aggaaatggc aaatgtggtg
      241 gaaataagaa ctttattatc tttttttctt ttctaaaagg gaggtgtgtg ggggaagaaa
      301 gtggcagggg catctcatgg
//
LOCUS       KCOD01001780             686 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 198516pyr ultra-conserved element
            locus uce-367, sequence.
ACCESSION   KCOD01001780
VERSION     KCOD01001780.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 686)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="198516pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>686
                     /note="ultra-conserved element locus uce-367"
BASE COUNT          222 a          114 c          123 g          227 t
ORIGIN      
        1 tttacagtta actgaggtga catcctctca atatatgaga ttgttgttaa attcacaagt
       61 ttttatcaag gccatgtgga ggatacaaat ctgaaataga gaaaaacatt gggagactct
      121 tcagatacat tgtgctttaa tttataatgt ataatctata catactgtat aaactatata
      181 aagaatcaag caatcatgtc tttcagtgtt atctattgcc atcattcccc atgcattgag
      241 gctctcacta tagctattac tataaaacgt tccctaagta cataaaggct ctaatcgtta
      301 agatttttat taccagccac acatacagag ctgcaaattg ccttgtttca gatttattat
      361 gtattactct agaaattcta taaagatcaa aagaactgat tacaatgttg acctttgcat
      421 taactcatct gaatttaaat tcaagtgttt gatttgggaa aataagtcca tttatcatag
      481 gtctgctact gaggggattg tgcagccctg attgggagtg ctgagaccaa atttatttat
      541 tgagcatggg cttgaaaatt gtttgtagga caagaggaac aaaagtttga cctgccattg
      601 ttgcacccag ggaacaatgt ggcagctgcc cttttcaaat atgtagcagt gctgaagagc
      661 aatttatagt ttagatacat ttaact
//
LOCUS       KCOD01001781             522 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 198623pyr ultra-conserved element
            locus uce-2763, sequence.
ACCESSION   KCOD01001781
VERSION     KCOD01001781.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 522)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 522)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="198623pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>522
                     /note="ultra-conserved element locus uce-2763"
BASE COUNT          172 a          105 c           70 g          175 t
ORIGIN      
        1 cttgaatcaa tttaattgca tcagtgtttc tcagctaccc tgccagaatg tgttgttctt
       61 gagtttaaag ggtctattcc tacctacagc agtctctaaa taaacctata aatccttgtt
      121 ctgtagcaca tgaattatca gtagcttcaa aataaatgaa gacaaaaatg gttgaatatt
      181 taaacgtgta gcaactccat cccatgatag atcatttcaa accaaaattc atttttttct
      241 ttgatatcta ctactgctat aaacttccag tttatcatat aacattacaa tttatggtat
      301 aaccagcttg tgtactgact ataaaccctt tgtcaatgcc actgtaaaga ctttatagcc
      361 cataaataat agaagagcga tagtatctat ccttcttatt ttgcccagca catccagaat
      421 acaggactct aaacatgtca gaggattcgc ttgttttaca tacaatatag gttatgttac
      481 atttctctct agcttacaca aagcccgttc aaataaatag aa
//
LOCUS       KCOD01001782             669 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 198733pyr ultra-conserved element
            locus uce-2574, sequence.
ACCESSION   KCOD01001782
VERSION     KCOD01001782.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 669)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 669)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..669
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="198733pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>669
                     /note="ultra-conserved element locus uce-2574"
BASE COUNT          187 a          118 c          149 g          215 t
ORIGIN      
        1 cctttttcag ttcaaagaaa agttactgat tttagtgata tttctcagtg gcttaaagca
       61 aaaatctgag gaagtggcag agggagaaga acagaatgat gctgttgcat actttttttt
      121 ttcctctggt aactgaaggt taaatgagta gcaagcagaa tgccttaaac aagattggta
      181 tattgattaa aacgctgatt taacagctcg ctttctccct ttggaaacct ggaaaagata
      241 agccagctgc tgtctaagag tgctgagtgt ccactgagag tacactatct atcatcacaa
      301 tatggtgatg agaggtgttt tatgtttgtg ttaatttccc ccactaaatc agtaattatt
      361 acaatcctgt ccctgctgtt taccctgcag ctgtttttcc atttgtcgag agagcgggtg
      421 ttctcagagg accgcacacg cttctatggt gcagaaattg tctctgccct ggactatctg
      481 cattctggga agattgtgta ccgtgatctc aaggtagtaa tcaaattttt gcagagacta
      541 tggggacaaa cacaaagtaa ttataaagtt gcactattca gagttaatgg gtctgtgttc
      601 agttttaagt tctagaggaa gtcgtttgat atagtaatca gatgggtacg ttccctgact
      661 ttaccttga
//
LOCUS       KCOD01001783             736 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 198845pyr ultra-conserved element
            locus uce-288, sequence.
ACCESSION   KCOD01001783
VERSION     KCOD01001783.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 736)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 736)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="198845pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>736
                     /note="ultra-conserved element locus uce-288"
BASE COUNT          209 a          154 c          116 g          257 t
ORIGIN      
        1 ggattctaat cttcacatgt gagatggcct cgaataattt ctgtgggttt tataggcagt
       61 tctgtgtgta aagagagacc tgtatcaacc catcccttct ttcaaacata taatctaaag
      121 tgtgggtggc ccttctttct tttgtgccat ggtaatttct tcataggtgg tacctgacaa
      181 gtcctttttt acccttagag ttttttgttc agattccatt cacttcaaaa tatcattacc
      241 attgcaaaca aggaaaatgt gtttatcaga aactgcaaac tcctttaggg cctcatagga
      301 ttaatcacgg ttataaagtt ttattaaaca caatttttgt ttaatgacaa gctccaccag
      361 tccttcccat tccaaaccaa tcctgtcctt agggtgtatc tagcacagca gattgttttc
      421 aacagactct caagacaatc cctattactt tgtcatgcac agagatattt ttcttcctgg
      481 ataatttgaa cttccttaaa aatcacatct gtttcatact ttatttattt gtaatttaaa
      541 tccttaaatt gaatctttca ttactaacat ctgggcttga aatgcagccc acttgaaaaa
      601 atacaaattt tattttattt gtagttactt cactcagtag cattggtaca aacattccct
      661 ggccagaggc aaaacagccg ggtatcttaa agctgtgatg ccgtaccacg tgtaatatgg
      721 ctcacttgaa tgtccc
//
LOCUS       KCOD01001784             700 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 198953pyr ultra-conserved element
            locus uce-222, sequence.
ACCESSION   KCOD01001784
VERSION     KCOD01001784.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 700)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 700)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..700
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="198953pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>700
                     /note="ultra-conserved element locus uce-222"
BASE COUNT          213 a          124 c          151 g          212 t
ORIGIN      
        1 gggctttgca agctgttggg ctgtatgtcc tattgattta atatgctcct aatcagtaca
       61 taaagctata ggcctgcagt gttaattttt catatgctta caaagtaccc tttgattttc
      121 tgtcacgcgt taattacagc gttttgccat taaataggaa gctttgtgta aactaattac
      181 taggtaatca ttgtctaccg ccagccctac cttttatttt attctaaaaa tgcacagatc
      241 tcgcagtctg gaaccactat accttccagc cattagctct cactaattca tagcattatt
      301 gtgctaagat tgtaggagtt gtggtatcag tgctgttaat taccggagta aacagttgaa
      361 atggtgccaa ggtctattgt acaaggcaga ggaaaaggag gtttaaatgt tacttccacc
      421 atctggggac tggaggagag gcaaatgcta gaaaacagca gtgaggcaat atcagaactt
      481 cagctccagg gttttaggcc atatggatcc agaatattct gaatcaattg aatttaagtg
      541 ccagtttgta gcaataacag tggggaagga gaggataaag caagagcact aaagaaatct
      601 gaaatgcctt aatgttggtg cagccaataa aatgcctgct tggattattt taaaaatgtt
      661 tgttttgcta aaatccagta acacataggc aactctggga
//
LOCUS       KCOD01001785             449 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 199059pyr ultra-conserved element
            locus uce-4359, sequence.
ACCESSION   KCOD01001785
VERSION     KCOD01001785.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 449)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 449)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..449
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="199059pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>449
                     /note="ultra-conserved element locus uce-4359"
BASE COUNT          133 a           70 c           95 g          151 t
ORIGIN      
        1 aagcaccaaa ctcttgatgg atgttgggtt tgtaggagct gtaaatgtaa attgtttttc
       61 ttctggccac ttatgtttta tttgaaacgt acaaaatctg tgtagttcct gagagctggc
      121 ctagagaaca gcagcactcc caagtagttt gtctcctatc aaatggcatt aataatttag
      181 tctctaatta aaagtgaggt caaacaatga aaaatgactg agctaaatgg ttacgctgtg
      241 atgtattaaa gtgcctggtg ggttttaatg gatggaagga gtgttgttgt ttgtttatgt
      301 acaaaacact ttcagtcaag gactgtagga gtcccgagga aatgtattta actaatatct
      361 tttacaggtt actgagtcaa tgtcttaaag agacaatttt tgcacacctt ttatatcctt
      421 caaattgctc agctacttgt aaagcagct
//
LOCUS       KCOD01001786             693 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 199170pyr ultra-conserved element
            locus uce-1329, sequence.
ACCESSION   KCOD01001786
VERSION     KCOD01001786.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 693)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 693)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..693
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="199170pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>693
                     /note="ultra-conserved element locus uce-1329"
BASE COUNT          239 a          134 c          110 g          210 t
ORIGIN      
        1 attgtgaaaa gtgaacccca ctgctaatgt ttttatttga ataaattatt acccaacaca
       61 gcaaccatca acattttaca gatttctgta atttttccgg ccctaatgcc agtcactatt
      121 gggagcattt agttataaat tgtctttcaa taaaagtaaa agctcccaaa acaacaaaat
      181 gaaaagacac agcagcttaa atcaaggaag tcaatttcca catgccgatc ctaaatattt
      241 catagcccta ttttattctg acatttgtag atgactaaag tgttacaaag gaaataaaat
      301 gctgattaaa gagttcactg tcataaaggt tactgaattg taaatggccc tttccatctt
      361 cctgttaata ggtacccagc tgtaaacatc atgaaggatg tgacgggagg cctgtgctgc
      421 tcctttagga gtcgtatata cattaatcac tgaatcacca agccatgctt aattgcaagt
      481 tgtatatcac acaaatccat ggtaagtaga aggaaactca ttattgctgc ttcataacta
      541 ctgggtactt ctcattttaa ccttctcaca cctgggacac tgttgtttta caatgtgaat
      601 gcagaaaagg cattaagtca ctaattatag taacactgta tgttaccctg ctgtttgatt
      661 tttcaaaata aaacaaacaa caacagagaa aaa
//
LOCUS       KCOD01001787             417 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 199277pyr ultra-conserved element
            locus uce-2331, sequence.
ACCESSION   KCOD01001787
VERSION     KCOD01001787.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 417)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 417)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..417
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="199277pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>417
                     /note="ultra-conserved element locus uce-2331"
BASE COUNT          150 a           85 c           71 g          111 t
ORIGIN      
        1 attgtttggc tccattgaga agctataaat ttcatctatt gaacattagc taaaaaatta
       61 catgtgttta tcatctggat tattctcaga ttaatagaga taaatgacaa aacataatca
      121 gcaccaactc tgcaacttaa tcattgcatc tgagctatag gaaacactta attactctca
      181 tttactaggt gcaatctaat gaggagacat tagccaaatg aaaagaatgc agtacaaaca
      241 aacaaaatag ttataccatc attaaaaaga aactctgaca gtgcaggtga cagcatatgc
      301 aggataaatt accataatgt cctaaatgct gagctgtcag catgctaatg ccggctcgga
      361 taccctggga atctcggcac tcgagctgtc agaaccaggg atcatcaatc acctccc
//
LOCUS       KCOD01001788             561 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 199385pyr ultra-conserved element
            locus uce-6812, sequence.
ACCESSION   KCOD01001788
VERSION     KCOD01001788.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 561)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 561)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="199385pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>561
                     /note="ultra-conserved element locus uce-6812"
BASE COUNT          170 a          100 c          105 g          186 t
ORIGIN      
        1 tgctgcattg tcaaggaaaa gggtttggag tactgtcctt tagggagagc tgtgtctgag
       61 tgtcaccatc tgtgttatgg gaggatattt caagatgaca ttccttctgc aaggagaaaa
      121 acctttgaag tcataaagtg ttaacttttt gtttttccag tagcctttca tatatcttac
      181 ttatttaaac tcactttgat ggtattggaa acacatttgc aggtaaatta catacatagt
      241 ccttttattg gatattgatt gtactgcctt gcattccaag gcagacttaa ttcaacaatt
      301 ccctaattag ttaaagtcat aacctatgtc ttgtattcat ttaccattaa ttaaacctta
      361 gctgtttatt acactgcagt ccaaatccaa tagcagaccc acagagccat ggaaaaggga
      421 ctgggaggtc aatattgaaa atatatggtg taaagtccca ctgatggctg cattgttcac
      481 aatcaatatg gtcaatgcaa cacaactttc ttagttgcta tgtcagcaag acaaaaagtc
      541 aattctaatg ttatgctagt g
//
LOCUS       KCOD01001789             740 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 199491pyr ultra-conserved element
            locus uce-3340, sequence.
ACCESSION   KCOD01001789
VERSION     KCOD01001789.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 740)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 740)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..740
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="199491pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>740
                     /note="ultra-conserved element locus uce-3340"
BASE COUNT          233 a          176 c          113 g          218 t
ORIGIN      
        1 tatagacagc agaactaaaa atatttacga agagtcttct tctagaacaa gaagtgtatt
       61 ttaacactaa aacaggatcg tcactatcaa aggtgcagtc ctgctcccag ctggttaacg
      121 acattggctg aagttctatg caagctcatc atcattcttt agaatgtggt ttgccactcc
      181 ataccagtta accttataat cactaaataa aatgctgttc ctcaacccat gcttacttat
      241 ttctggtaca caaaacacac ctcatcttct tcatcagtgc tctttcctga tggcacatta
      301 gaagtatttt ttgtgtcctc ccctaaagca gaagcatcac cattagaagc cagggttcct
      361 tgttccgctt cccattcctg caatacctcc tctaagttaa accgacgcct gtagtttaca
      421 aagaagttct tcacttggcc aacagtcttg ttgccaatta catctgcaat agcttgaaaa
      481 tctttaccat attttcggac acctggaagg caaagtaaat aacatagctg tgaagaatca
      541 gtcagacaca gctacgtgtg atgtaagaga gaacctatgg gacctgcaaa ccttgctaat
      601 taggagaact tctcaattaa atttccatta gaacaaagta atttttaata gcacagctat
      661 caacatacaa atcaaaaact ttattaatca ttacccattc ttcttagatc ctggcttacc
      721 tcaacctggc ctccgacaaa
//
LOCUS       KCOD01001790             684 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 199598pyr ultra-conserved element
            locus uce-2742, sequence.
ACCESSION   KCOD01001790
VERSION     KCOD01001790.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 684)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 684)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..684
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="199598pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>684
                     /note="ultra-conserved element locus uce-2742"
BASE COUNT          228 a          114 c          129 g          213 t
ORIGIN      
        1 gtgagttttg gggcacttct gaggggcttt ccgtgcatga ctctccctga tttaccagtg
       61 caagtcaagg tagtaagaca aggccattca tgtgctgaca tcaatttttc aagcaatttg
      121 agatcttaaa ctgttcatgg atagcagaac tagcattaga atgtgaaaac agcctatcat
      181 atttcgtaat gtatgtcata atgaacaaaa gccttttttt cactgtgcta aagtaacaat
      241 ctagacttgt tgtaagtatg ttattcttac aagtagttcg cagttattct tgaaggcaag
      301 tcttggagtt tccttagcat agtgctgctg gggaaaattt tcagcatgtc catcttcatc
      361 tctagcctga agggaaatat aatggcctat ttagggactt acaaataatg gaagaaaaaa
      421 atagctaaaa gcataacagc tcagatcatt aaaacagacg ggaatcccaa aatacaacat
      481 tattaaaaag tttcttttca gtacaccttt tagatatgag aacttgggat gctgttttct
      541 tacatagctt agattgaaca tgcaaattca ttgtggagta ataattaaaa caacaaaaga
      601 caaaaccaaa atgaaatatt tgagctggaa actgtgagta actcagggtt tcaatttact
      661 ccattgcatt tttcaggatt acat
//
LOCUS       KCOD01001791             528 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 199703pyr ultra-conserved element
            locus uce-7442, sequence.
ACCESSION   KCOD01001791
VERSION     KCOD01001791.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 528)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 528)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..528
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="199703pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>528
                     /note="ultra-conserved element locus uce-7442"
BASE COUNT          142 a          123 c          141 g          122 t
ORIGIN      
        1 tctaaacatg gattatcttt tcaggacgtt tgtttcggga gcgggttgcg ctaagcaaag
       61 gtacgtcaat tgataataaa cctgctccgc actgtcattt gtgggtgatt tgaggaaaac
      121 cagaccatgt aatcaggtct aaggggtccc taataccaga gacgctggtg ctgtcagcta
      181 tagaaaataa ttagaacgtt atccctgtgg caaggagaat gtaaatacat ctaaaatacg
      241 acataatgac attctcctct gtaagccagg ggatctgctt caaataaaag ggccattaac
      301 acaacaatta aagccgaggg ggccggtgaa gtagggagct ggcctggtgc agggcgaggc
      361 gagcggcgta aatctttcgc catcccagcc aggaatgtga ctattagccc tctcatgacc
      421 cgagggcttc ccaataatgc atctgctctc tgtcagggcc aggatttcgt aacgtcctcc
      481 agtgcgagcc cagggctgac tccacggtgc ggcgccaaag cgggagtc
//
LOCUS       KCOD01001792             391 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 199807pyr ultra-conserved element
            locus uce-7689, sequence.
ACCESSION   KCOD01001792
VERSION     KCOD01001792.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 391)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 391)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..391
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="199807pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>391
                     /note="ultra-conserved element locus uce-7689"
BASE COUNT          154 a           49 c           81 g          107 t
ORIGIN      
        1 aattaaacag caaattatac ttatcaaaga aaagaaggta aaaaggaatg agaaatcttt
       61 aattattagt attgtggcat gaaaagctgt tgatcccttt agaaacatac atggccaatt
      121 atcaaaaaat ataagagatg cagacagaaa ggtttgtcta ataagtatga atcgcagggc
      181 catttagaac atcagtgtta aagcattaga gttaaatgga aaagtaaaaa ggggctgatg
      241 gttttaacta tttcacagga ggacaagagg ttgatactga taagacaagc agtatagtga
      301 agttaattat ctgcagccct tggtgcacaa agctttttga gctggtgatt aatagagata
      361 aaccattcaa acttcacatt tctaaggtga a
//
LOCUS       KCOD01001793             681 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 199916pyr ultra-conserved element
            locus uce-5951, sequence.
ACCESSION   KCOD01001793
VERSION     KCOD01001793.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 681)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 681)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..681
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="199916pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>681
                     /note="ultra-conserved element locus uce-5951"
BASE COUNT          235 a          121 c          124 g          201 t
ORIGIN      
        1 ctgtcatgcc tgcgaggtta cagacctaaa agaaggtatg gtgtaagatc aatgttaagg
       61 aaagagtttc atttataaga ccatcttttc ccatcagaca tgataggaga tttattattc
      121 caatattatt gttgaaacta gaaaaaaata aacaggaaca tatattttca ttttatgact
      181 gcgaacaaca tttcatactg taaacatatc ttggtctata acatttaccc actaatttca
      241 atacagtcct tattgctagc tcggcagagc ctctccagaa cattgtgtta atgattaata
      301 tgaagtcagt ggaattccac agttgctgag agtcttgtgc ccaagaatga actgcattgc
      361 taaatcagca aagacagttg tcaaggtaac ctctatgtaa tctatttaac tggctcccaa
      421 aacaccaatc aaggtcagat aacgcactca agcaccatat gaacacactc atacggcata
      481 aagctttgta tcaagacagc agggaggaaa aaacctcatt aggaagcaaa aaaaataaat
      541 tcagttttga gaagtgttaa ttgggattgc agttagcttt gtggggaaag catgccgctc
      601 atctgaatat gttttatgta tagtagaagt aatttcactc cagttcagtt tgaatggaaa
      661 tatccttcta ctagtgttaa a
//
LOCUS       KCOD01001794             630 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 200014pyr ultra-conserved element
            locus uce-4787, sequence.
ACCESSION   KCOD01001794
VERSION     KCOD01001794.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 630)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 630)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..630
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="200014pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>630
                     /note="ultra-conserved element locus uce-4787"
BASE COUNT          150 a          150 c          190 g          140 t
ORIGIN      
        1 agagagcagg ggccacagtg cttcctttct gtttggcttg ttggctggat cgctccaggc
       61 tggctctgct caggtctagt catgctgagg aggtggtgaa aacaccaagt gtggctgcag
      121 gcaagtccct gcccaggtca cgatgctgca ccgcagccag cgagcgggtg gaaggtgcca
      181 actccatgct gcctctggtt accttcttgg tgcactgtct aacagtattg attaactccg
      241 aaatgaccat gtccacgcat ttcaggcaag gttctttaat cttcttcacc tgctttttca
      301 caatggtctc aaaggccatg tcaggtgtga agagaccggt tctaaacacc cagggtgggg
      361 acaagacaag gcaggagggg gagaaggggc aaggagaatg tcacagcgtt acacacacat
      421 cttggagcag gcactgccat caccaaaacc cgggacattt aggctgggca agccatgacc
      481 ggagtccatg aaaaatgagg atgcttggca cttcccagga aggaggtgct gagggcaaat
      541 ggatcttagc tggatagcca gggccaggtt accattttac ctcaagggtg gcaggggctg
      601 agtatttgac ctcgagttgt gcaggagatg
//
LOCUS       KCOD01001795             503 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 200121pyr ultra-conserved element
            locus uce-6538, sequence.
ACCESSION   KCOD01001795
VERSION     KCOD01001795.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 503)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 503)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..503
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="200121pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>503
                     /note="ultra-conserved element locus uce-6538"
BASE COUNT          178 a           90 c           93 g          142 t
ORIGIN      
        1 cctaccctag ctcaagtcac ttaggaagcc tttatgtaga ttttacactt aattaacata
       61 acctcatcag acttggtatt ttctggaatt tacacggact ggatgtcgta agaatggctg
      121 cagacgaagt cgtaagggtt gctttgctga gaaagagaaa gaaaaatatt gtatacagca
      181 aagaaaaact tggattagaa gatggattta gtgggttaag aagtcacaga actttgacaa
      241 atcacaactt tactaataca aataagaacc ctgagctgca tttgaattca catcacacca
      301 cacctggtaa gaattagtct agcacagcat catcaatcat agtgtggttg tcagttttga
      361 catcctttaa gtctatgttg tatgcttaat gactacatta cagaaaatgt aaacagacac
      421 caaacataca ggtatgccct atataaaagt tgctgtacag caccatcagt gctttatata
      481 gaataagtaa aacagctggt ata
//
LOCUS       KCOD01001796             561 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 200230pyr ultra-conserved element
            locus uce-7706, sequence.
ACCESSION   KCOD01001796
VERSION     KCOD01001796.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 561)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 561)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="200230pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>561
                     /note="ultra-conserved element locus uce-7706"
BASE COUNT          145 a          100 c          118 g          198 t
ORIGIN      
        1 ttaggtgttt gttaatcagc acagaattag cccaagattg gcttaggatt tactgtattt
       61 ctgaaatttg tggtgaatct tctgtgcccg atttaaaagt gaaggtggtg ttttctttct
      121 cagttgaagc atcatttttc catattgctt ttctctcagg aatcaattct aaaagtgctg
      181 tggctgtaaa attgaaatgg acgaggaatc taatgtatcc atatttttat gcttttgaat
      241 agaagtgggg tcctctctcc tgagacatcc atctcctgaa ctttctcggt taatctccgc
      301 ccacagctct ctttccaaag gagagagaaa tttccagtgg ccagtattgg catttgtaat
      361 ccagcatcat gatctggaag gacttgaaat agcaatgaaa caagccttac ggaaatctgc
      421 ttgccgagtc tttgccatgg aggtattaat gtactgatgg atctaagatg gttgtaaatt
      481 ctgtcttgga acttttttaa gattattcta tgttccctgt ttgtcatttt attagctaca
      541 gagcagtgaa gacctttgcg t
//
LOCUS       KCOD01001797             660 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 200339pyr ultra-conserved element
            locus uce-3657, sequence.
ACCESSION   KCOD01001797
VERSION     KCOD01001797.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 660)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 660)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="200339pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>660
                     /note="ultra-conserved element locus uce-3657"
BASE COUNT          200 a          130 c          129 g          201 t
ORIGIN      
        1 tatcacaaca atcaagtcat taaggtccac attgaagcca atgagaatta gacacaaaca
       61 ttttcttaaa aggcataagt gcttcaattc tagaatgaga gctggtacac caaatacact
      121 gcaacaactt tcctgctaca cagacttgaa tcaaacacat caccaccttg atactggcta
      181 tgaagtcagt atttctattg catttcatga tcaggagata caatacctct gtctgaagta
      241 tggcagctct ctgttctttg gcagtaaggg actctttaag cacttcaatg tgttgcttgc
      301 aatctgaatt ctgattgcta agggtttcaa gcttagtttg taaggcaaga agttctgatt
      361 ctttctttga gagttcttgt ttcagttgat caatctgcag taggccattc attttgtctc
      421 caattcatag gtccactgga aatctgaaag atgtgaatga ccatgatatg acaaagcaga
      481 tacctgtgaa ttctggaaga gacttcaatg gtgtttcttg caatttaatg tagaacaatt
      541 gccctgttgt tgcagaagtt aaaaggaaac tcctacgtga tgatttggcc tataaattca
      601 ccacggacct cacttaagtt caaaggcatg tatcccatgt gaggcaagtc tggcaggaca
//
LOCUS       KCOD01001798             657 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 200447pyr ultra-conserved element
            locus uce-1169, sequence.
ACCESSION   KCOD01001798
VERSION     KCOD01001798.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 657)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 657)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..657
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="200447pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>657
                     /note="ultra-conserved element locus uce-1169"
BASE COUNT          202 a          126 c          110 g          219 t
ORIGIN      
        1 tgatatgtta ccaccagtga tgttattttg aagacaatct gtgatacacc taagagtgag
       61 tttacttatc attaaaaagg ttcttttgtt tttttcccat tacaaactat ttctgttatc
      121 tgcaacttgg gaaaatagca agtttttgca gtttgaattt tttttgagca ttaactgatc
      181 tagattggac tgggtactca ctctgtcgca cagctcttca aatgtgaagt ctgcaatggt
      241 tccacacgct ttattcagcc tcagctctct gccttgcact tttagaatcc ttggtctagt
      301 tactatggga acatgaacaa agactcaatc ttctctggat aattactata aaattcatct
      361 cttacagata ggaaatgcat agcttcatga ataatagcac atgattcaac acataaatta
      421 gacaaaatgc tgatacaatg actgccactt gagtgtggca tcaacccata tacagcaatg
      481 gaacttatta attggtcagt ggagattggg cattgtgttc taaatgtatt ctctttcaag
      541 agaaattaac ttacgtacaa tcattttgtt tctgagccag ctcatcaaac aacttatcca
      601 tgacagcctc cacatcagct tcacttgtgc tacagtgaaa agaataatag aatatga
//
LOCUS       KCOD01001799             377 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 200559pyr ultra-conserved element
            locus uce-5295, sequence.
ACCESSION   KCOD01001799
VERSION     KCOD01001799.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 377)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 377)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..377
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="200559pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>377
                     /note="ultra-conserved element locus uce-5295"
BASE COUNT          128 a           53 c           81 g          115 t
ORIGIN      
        1 tttttaagca gaagtattag ctatctgcaa ttcaaagtga tgggttgagg gtcttcccat
       61 tttgttttta agaaggtcac agtgaaagct tgtgattgaa tattttgcat ggaactgcct
      121 atgacaaaga caaagacggg gtttgtcaga gtgctgtgaa aagaaagaaa gatctgtgtt
      181 agatttttaa ggtatatttg aaagaatgaa ataaaaaaaa tgctttcaaa tcctcaggga
      241 ctttccaatt tatcaagaaa gacacattct tcctaatgaa aggttactga ccttcatgaa
      301 tgtgacagtt caattacagc ccattcatat gcagagcagt cgttgataaa ggatttagga
      361 aatgtgacta gcatagc
//
LOCUS       KCOD01001800             483 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 200664pyr ultra-conserved element
            locus uce-6986, sequence.
ACCESSION   KCOD01001800
VERSION     KCOD01001800.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 483)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 483)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..483
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="200664pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>483
                     /note="ultra-conserved element locus uce-6986"
BASE COUNT          156 a           83 c           74 g          170 t
ORIGIN      
        1 gtggttggag aaatcaaaaa accttagatc aatgatcaaa ctttcatagt agatggcttt
       61 tatttttaca aaatatttgc ttccagcaga gtatatctta atttacgaat gcagaaatct
      121 gtcattaagc tttgacccag cttcatggca ttgtcaaatg caataacgta tcttttaata
      181 gttttatatc aagtaaggac ataacatatc attagtttaa atgtatttgc aagcaattac
      241 ccccaccagg atatttgtga atgctcatgc aaaattgatg aaattctgac atgcttaaac
      301 attgttcatc tagctctatt ccttatgtat agaaaaaata gaataaataa ttctgctgcc
      361 acttgcaaac tactgctcgg cattttcatt ctgttcgtgg cttctgtcct gcctttaaac
      421 gatagccctt ggtgatcatt tggaaaaaca gtttcatata tgtttaattt taaatagatg
      481 tac
//
LOCUS       KCOD01001801             665 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 200769pyr ultra-conserved element
            locus uce-3746, sequence.
ACCESSION   KCOD01001801
VERSION     KCOD01001801.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 665)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 665)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="200769pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>665
                     /note="ultra-conserved element locus uce-3746"
BASE COUNT          201 a          114 c          123 g          227 t
ORIGIN      
        1 taggtcctat ccttaggggc tgatgttcta ccagaatata aactccagac acctcgcatc
       61 aacaagttta ctatattgca ctatagtcct ttcaaagccg tctgggactg gctcattttg
      121 ttgttggtga tatataccgc catattcacc ccttactctg ctgccttcct tctgaatgat
      181 agtgaggatc ggaagaggag agagtgtgga tattcctgca gcccactgaa tgttgtagat
      241 ttaattgtgg atattatgtt tatcattgac attctaataa acttcagaac aacatatgta
      301 aaccagaatg aagaagtggt aagtgaccca gcaaaaatag caattcacta cttcaaaggc
      361 tggttcctaa ttgacatggt tgctgcaata ccttttgacc tgctgatttt tggctctggc
      421 tctgaagagg taagcttaaa tgaattagaa atcttaattg tcatttaata ggctgcttaa
      481 tatttccatc ccatctttta aagttaaact aaaattaaat cttagaataa tgtacaatat
      541 tagctttcat tgacaagagg aatcgttgga tgatttagct agtatttttc agttatacca
      601 tatttgatat tgtctttaga aataataaat atattgtgta taggacttgg tggtttcatc
      661 taaga
//
LOCUS       KCOD01001802             388 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 200968pyr ultra-conserved element
            locus uce-1450, sequence.
ACCESSION   KCOD01001802
VERSION     KCOD01001802.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 388)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 388)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..388
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="200968pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>388
                     /note="ultra-conserved element locus uce-1450"
BASE COUNT          129 a           66 c           77 g          116 t
ORIGIN      
        1 tccagaatca gagataaaat gatttaggtg aaattatttt tctccagtga ccttgcccaa
       61 taatagaaca gtacaaaatg cagtaatttc ctttttctaa acacacgtgt ctattttaag
      121 ggaaagaatt acttttatgg tttcaggaaa aagtcttgga gaccttgaaa aagcaaataa
      181 aaggaaacag agaatgcagg ccactgagca cagctctgca gttgcacatc tgattctctg
      241 ccttggcaat gttaatgaac ctcaaatcct ccctataatt agatgaggga attgcttata
      301 ttttcaaaca gatgatgctg ctgtaatgaa acgattgaca gggaacttaa aagtgtctac
      361 agtagtcatt tagtttccgg gttttggg
//
LOCUS       KCOD01001803             516 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 201076pyr ultra-conserved element
            locus uce-4570, sequence.
ACCESSION   KCOD01001803
VERSION     KCOD01001803.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 516)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 516)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="201076pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>516
                     /note="ultra-conserved element locus uce-4570"
BASE COUNT          126 a          109 c          124 g          157 t
ORIGIN      
        1 atcactcctg tttatctcac catttcctat gagaggcggc aaggtcgggg ctttggaagg
       61 tggaacgggg ttcagtcttg gaagcattcc attaacttgt ttcaaccttt ctaatttcac
      121 ttgctccatc catttggtcc ctgttatatt cctcctggcc tgtaagccaa gtgctgtggt
      181 ggctgtggaa atggtagagt ccatgattgg ggtttcatcg atgacactga ggtctcctac
      241 actaccacca ccggtcagag taagctcgat cccattgttg gaatagttgc tgatggggga
      301 ctgttcgctg ctgcatgtag actgaccacc agggcttggc tgagatgtct gttggaggga
      361 agtaaggtga ggattaagca tgttaaccgc agtgctaaat gaaggtacag aaaagtgatc
      421 agattttaac taaaaatctc ctttcacatc ttgctgatgg tatacaatat atctccataa
      481 gacatatccg agttattcct atagttactt ctatca
//
LOCUS       KCOD01001804             425 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 201185pyr ultra-conserved element
            locus uce-3504, sequence.
ACCESSION   KCOD01001804
VERSION     KCOD01001804.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 425)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 425)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..425
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="201185pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>425
                     /note="ultra-conserved element locus uce-3504"
BASE COUNT          165 a           67 c           63 g          130 t
ORIGIN      
        1 acaaccccac agtaagtgta tcttaataat acaataaagt gttagctctg attagaaaag
       61 aaagatgaat tcttctgcta aaccagggta accctaaaag cgtgttaaca tgaaatacta
      121 aataaaatgc tactcatcta taataaatct tattacacat tttggcaatt ttactactaa
      181 cataccaaag gtttcaagca atgtttgaaa atagaaatct taaattgaat cattgttgca
      241 tgaatatatg caaaatattc atttctagca ctgtgagggt tgagtgcttt taaattggag
      301 aaatcactca tgacttcacc ttttcatgca agataaagtt gtatgtggta acatcattac
      361 aatgtcatga aagaagtgga aatcatacaa cagttctgcc taaagctaat atacaaaaaa
      421 gtact
//
LOCUS       KCOD01001805             315 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 201290pyr ultra-conserved element
            locus uce-2243, sequence.
ACCESSION   KCOD01001805
VERSION     KCOD01001805.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 315)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 315)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..315
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="201290pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>315
                     /note="ultra-conserved element locus uce-2243"
BASE COUNT          104 a           57 c           59 g           95 t
ORIGIN      
        1 caaatactaa atcccagcat taattttaag attaaaaata gcatttctgc tacccgagca
       61 cctatgtaac gctgcttctg tcctttaaaa aacagtttta tgaaggagca gttgagccaa
      121 aattgaaaaa agggggcatg tagcctttca ggctacgatg attagtatta agatgagttg
      181 cactttagct aggctgaaac ttgttcgtaa cagaatgtta aatacttact gaaaagaaag
      241 attatgtcta tctagttaca ccattccttg atatatgcac catgtcagag tgccattgtc
      301 tcctgggtaa agact
//
LOCUS       KCOD01001806             599 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 201394pyr ultra-conserved element
            locus uce-5445, sequence.
ACCESSION   KCOD01001806
VERSION     KCOD01001806.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 599)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 599)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..599
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="201394pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>599
                     /note="ultra-conserved element locus uce-5445"
BASE COUNT          223 a          107 c          100 g          169 t
ORIGIN      
        1 aaaacaggga ccagaaatcc taattcaaag tgccaataat tacagcactt acaattcacc
       61 ccgtatggaa tgtgattttt atcagtgcaa atggaatagt ttaaatttaa aacaacaaag
      121 cagcttttag attagtgttt tccttaactc atcattaatg ctttggaact aattaagtgt
      181 agtgaagcaa atggatactt ttgtactgat gaaagtacaa gagcttcaca gagagatgta
      241 atgcagccct tttatcaaaa gcagtcactc tatctcagcc tgacagttaa cagcatatga
      301 tctagtaaac aaatactttc acacagtaca aaagtgccat taaaggccag aactgtcaac
      361 acaaattcca ttcttgcaag agaaaaaaat atataaactg ttgatcacct ctggttgcct
      421 taactagcat ggaggttgtc atggaaacat ttctgcgaag ttcacagtga tgaaacacaa
      481 acacttccag tttaattgct attaggttta gcataccaga gtttatttat actcaaagag
      541 cattatgata aaatgcagta gaaagtaaag ctagcaatga tctgacataa taaagccaa
//
LOCUS       KCOD01001807             799 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 201506pyr ultra-conserved element
            locus uce-8009, sequence.
ACCESSION   KCOD01001807
VERSION     KCOD01001807.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 799)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 799)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..799
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="201506pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>799
                     /note="ultra-conserved element locus uce-8009"
BASE COUNT          229 a          181 c          165 g          224 t
ORIGIN      
        1 gttaagcgtg aagatctgga agagacagtg ctgtcctgtc acagagctgc ccttttgcct
       61 cttcctcaca catccacatg ctcacatagc ctgcgttcct cccccattaa gctttgacct
      121 gaactagaga tagagctaaa tatgtgtgca cctgtcccct tataatgacc tgctattatc
      181 attttccacc cctctttttt gattgatgga tattatatgc agagtgaccc tcaggatctt
      241 tttgttaggc cttgctaaag caacctgcaa attaatttaa tatcctcttt tggttgggag
      301 ctatgaaacg agggctcgag gctgatgatg cgtaaaccat ttgtggcatg tatttaatct
      361 ctggacaatg gatagagatg ttagtgcatg ctacactaag ttctatttac gctggctatt
      421 aagtgcagtc aagctgaagg caatcggagc acattacagg gcctaatggg agaggatgct
      481 acacaacagt acattaaaga ctgaaaatga attaagaagg aagcatggta gagaaagcag
      541 acaaggaaag ggttctgtat acagataact cttattgaca gcacaaatat tcatgtactc
      601 ccaaatccaa ttttggtatt ggataccact ctagagggaa tgttttgaat tccattttca
      661 tgcagataca aaatgactcg caaccagcct gcccctccca cctgcacctc agtggtttgc
      721 ataacctgat gctgggaaat gccttgcaaa gctaagccag atccctcctg accacctaaa
      781 tcaggctaaa ctttctcag
//
LOCUS       KCOD01001808             724 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 201618pyr ultra-conserved element
            locus uce-390, sequence.
ACCESSION   KCOD01001808
VERSION     KCOD01001808.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 724)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 724)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..724
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="201618pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>724
                     /note="ultra-conserved element locus uce-390"
BASE COUNT          222 a          156 c          133 g          213 t
ORIGIN      
        1 aagtagaaag ctggagtaac caaggggtta aagatacagt ttaaacttgg gaattctcta
       61 taatatgctc ctccttccct agcagaaaaa tcatctgaca ggaaacataa gattaagttt
      121 gtcccaccta agtgaacaaa gagagctcag aacaggcaac cagttcacta cagagcaaga
      181 actaatcctg ctggaagctg cattcctact cacaaattat tactgaagtt aacatcttgc
      241 ttctagagcc acactgcagt tcttgttgct tctcccataa aggttaactt aaagctccaa
      301 acataatcat gtggaaaatg gacattattg attcctatgg tccattgttc ccccattcta
      361 aatccctgaa gttcaagttc aatctggaat tacatcatgt ctggtttctc ctggttacca
      421 gacggcttga gacgtgacca cagctacaga aaaaacaaac agccttcttc acgcttcggc
      481 tcccctatcg attcaaacat aaactttttt tctttctctc aagtatgctt caagtatgga
      541 gcatggttaa tttagagatt aagttccaaa ttagattatc taatggcatc ttaatggatt
      601 gctgacccat ttcctgtggg atggcagcat gcaagtctgg cttgaataca actaatttct
      661 taggaagtgt tgaagatgtt tgcctagatg gaaaggaaac agtgttctgc acatctctct
      721 gcat
//
LOCUS       KCOD01001809             616 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 201728pyr ultra-conserved element
            locus uce-3178, sequence.
ACCESSION   KCOD01001809
VERSION     KCOD01001809.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 616)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 616)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..616
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="201728pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>616
                     /note="ultra-conserved element locus uce-3178"
BASE COUNT          183 a          170 c          102 g          161 t
ORIGIN      
        1 atccacctat tgtcttctga tctctctggt aagagccttc catatgacta gaactgcttt
       61 taagagcacc acccctcccg cccccagcat ttcctgtcct ctcaccttaa aatgagaact
      121 tttcgaccaa ggcagccatg tggagccaga attgtttcag atttatccag gcctttgctc
      181 acatcctgtc gggtgttaaa aatccctcag ctgctttgct aggaccaccc ggctagttct
      241 gaaccacatc tgacaaaatg atactgttca cttccagaac ccatcacaca gttattcttg
      301 gataaaaggt aaagcaaata gcagccaact gctcactgct gcagaaacga agaccatcta
      361 gccatttatc aaagcttcag acaaccagct tgctttgagc tcagccacct ctcccattac
      421 agctttaaac gataacacgc cataatatca gcaatgacaa atggaaccag gggcccaacc
      481 tatacacaat caatacctgc tctgaaataa gaaccatctt taaagtattg acaaaggcag
      541 cagcaatacg gataaaactg caatttttcc ttgaattgtt tggtatggcc actgtcaaca
      601 ttcatttgtc catgac
//
LOCUS       KCOD01001810             375 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 201833pyr ultra-conserved element
            locus uce-5861, sequence.
ACCESSION   KCOD01001810
VERSION     KCOD01001810.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 375)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 375)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..375
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="201833pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>375
                     /note="ultra-conserved element locus uce-5861"
BASE COUNT          110 a           75 c          105 g           85 t
ORIGIN      
        1 ctttgaatgg caattaggaa aaggttaacc gagtgccttt ctcccaggaa tcctcttcct
       61 cctttcaaaa taacagcgtt agcaaaagaa aatcccagat taggctaaca ggtaggagcg
      121 tggtgcagcc ctgggagatg ctgttggaag tggggagatt gggagaatca tcccagcggg
      181 agactaatac tcatcattcg gagctgcagc tgaggcccgt ttgagtgaca ggcagccggg
      241 agctgaaaga gccgctcata tcccacaact gctggcatgc agacttgaaa gagatttatt
      301 tcaggataat tagctgggag tattaaaggt ggcaggaaag atctgcaatt actgtttagc
      361 aaacagaatg gaggc
//
LOCUS       KCOD01001811             526 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 201940pyr ultra-conserved element
            locus uce-6769, sequence.
ACCESSION   KCOD01001811
VERSION     KCOD01001811.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 526)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 526)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..526
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="201940pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>526
                     /note="ultra-conserved element locus uce-6769"
BASE COUNT          158 a           94 c          104 g          170 t
ORIGIN      
        1 gaaaggagaa ttttgaattc tatgagttgg caaagttgtt gccactgcct gcagccatta
       61 ccagccagct tgacaaggca tccatcatcc gacttacaat tagctatctg aaaatgaggg
      121 actttgctaa tcaaggtgat cctccatgga acttgaggat ggaaggacct ccacctaata
      181 catcagtaaa aggtatgcgt tgtgtactac cgagtatggc agcctttagt aacctctaaa
      241 ttgaaatttt taccttcatc ctttcttctt tccctgcata tcaaatcctt taaagggatt
      301 caaatgtgga aatctgaggt ctgcatgaga aagacaccat gtgaaggtga aataaacctc
      361 ttattttaat taaacaacaa atctataatg taagtcttct ggtaaagtgt ttcaagttat
      421 ttagctgtta ttgtggtatt ttgcataagg atgtgtttga gaggtgattt gagaactcag
      481 tgtcttaatt ttctggctat accttaaagg atcacatatt tctgaa
//
LOCUS       KCOD01001812             672 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 202053pyr ultra-conserved element
            locus uce-2063, sequence.
ACCESSION   KCOD01001812
VERSION     KCOD01001812.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 672)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 672)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..672
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="202053pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>672
                     /note="ultra-conserved element locus uce-2063"
BASE COUNT          205 a          143 c          119 g          205 t
ORIGIN      
        1 aaaaactcaa cacaatttac cttggcaaaa tgacagaccc tatttctgct ggctaaaatt
       61 agcctttaat gcgtttatta atttcaccaa acgtacttga aatgttgttt tccgtagcag
      121 tattcattat tcctttttgt gtttcaggct tactcttatt tattttttcc attttgtttt
      181 tacaccaagg agactgcagt caaataacac tcagcaactc atttcctctc tttggactga
      241 aaaattaaac agatactaaa ttatgacagt gaatttagaa aggagggctc caagggctcg
      301 aaagaacatg tctgagataa tatgatgctt ctaagaatat tgcaatcaca tccaagcaat
      361 caccgaagcg tgccatgtaa ctacctcctc agctaatatg cttttttctc cgtgatgact
      421 aatcatgttc tattaaacag cagtaatgct ggaagaactc aactatacaa gtgtaatgaa
      481 gccagtattc tccccggaca gattagctac aactgatttg acacatacca tcataggagc
      541 ttcaaacctg acaaactctg tgcttgcttc tgatttatgc cgtcaagctc ttcaggagaa
      601 gagaatggaa atccaggcgt cgccgcgcgg tagaggtgaa atgttctgat gtgcttcact
      661 gtaaagtcac cg
//
LOCUS       KCOD01001813             573 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 202162pyr ultra-conserved element
            locus uce-4842, sequence.
ACCESSION   KCOD01001813
VERSION     KCOD01001813.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 573)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 573)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..573
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="202162pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>573
                     /note="ultra-conserved element locus uce-4842"
BASE COUNT          181 a          100 c          129 g          163 t
ORIGIN      
        1 gtgccaccag cacacagggc agcagctgat tcagccactt gaccagagat gtaatcggga
       61 ccgagacggg gagggggaag agctgaggat ccttttgagg ccgccacctg ggactggcgg
      121 cacttctact aatgcacagt gaacagctaa atcatacatt attgatttgt cagatgtatt
      181 tgcatataaa taagcatgat cattcataca aaccttaatg ttgttgttct ccctttagtg
      241 ttgtgatcac agatgaatga ctctagttag acacaattca ggaaagcttg taccactgca
      301 gcaaagtaag ctgctgattt aaaactacat ttattggagc atgtaagtgt gacagtctat
      361 tggtgaattt ggggataatt agtctaaaag acaagataaa tgaatcctga aagtggtatt
      421 gtgatgaaga aatgatccct ccatgctagt aaagctttga tgccagaaat attgtaaatg
      481 ataattaact gggaaacaca gaggaattat atttcaattg tgttttcaaa aggacttaga
      541 attttacagg caaattgatt cggttctccc ctt
//
LOCUS       KCOD01001814             794 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 202275pyr ultra-conserved element
            locus uce-759, sequence.
ACCESSION   KCOD01001814
VERSION     KCOD01001814.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 794)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 794)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..794
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="202275pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>794
                     /note="ultra-conserved element locus uce-759"
BASE COUNT          241 a          135 c          177 g          241 t
ORIGIN      
        1 agagagctcc acagtgtctt ggaaagttca ttgagattgc agctcgtaag aagcggaatt
       61 tcattttgga tcaggtagaa gcttcagtga aaaacggttt tataggctgt taattgggat
      121 gcagttgttt cagttactac tcattcaggg gacactacaa atgcttgtct gaacttctct
      181 agatttatgg gatgttttta acacgttaac tttgcattat gcagcatctt tatgtccagt
      241 tatttgtaaa cttcattgca agctcttgta gaggtgaagt ctatacacca taagttgact
      301 tccttaactc ttacaatgac agctacgtgt agtaagttac tgcatttttt tcagacaaat
      361 gtgtctgcag ctgcgcagag gagaaaaatg tgcctgtttg caggcttcca gcgcaaagca
      421 gttgttgttt gcccaaaaga tgaagactac aagcaaagaa cacaaaagaa ggcagaggtg
      481 gagggaaaag atcttccaga gcatgcagtt ctcaaaatga aaggcatgga acataatcct
      541 atactgtgtt ttaggatgct gagtatctgt ttaaaggatt aagtaaacgt gaagtctaaa
      601 aaatcacttt atcttataca aaactggaag actattgtaa cttggtagga taacactata
      661 ttgtgttccc tctgctgcag tccttaacac tactcagtta tggtgatacg cttcatgcag
      721 atgcacaaag ctgtcttggc atataagtga catatttggc agaaactggt gttctgagtg
      781 gaggcttata aaag
//
LOCUS       KCOD01001815             765 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 202386pyr ultra-conserved element
            locus uce-7727, sequence.
ACCESSION   KCOD01001815
VERSION     KCOD01001815.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 765)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 765)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..765
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="202386pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>765
                     /note="ultra-conserved element locus uce-7727"
BASE COUNT          232 a          147 c          169 g          217 t
ORIGIN      
        1 tttccttgct attcttctgt actaagccaa tcgtcaggag tggctgggtc tgctgtctcc
       61 agaaatgcat aagaaacttg ctttatcaga gaaccgtaat tgccatctca gacttcctgt
      121 ttaggattca gtcaagtaga tattgtttat ggatcataaa accttactac tgtgaggatt
      181 ctcaaatacg agtttcaact ttcatggtgc tgtaaattag aaaaaaagtg tgataatact
      241 cctcggagaa cagtaaaata gagctctgca atggttaaat ggaattttat aagcacattc
      301 agtgtggaac tgttttgcat tacatgagtt gaatacctta gagatgacac acatctgcag
      361 gcactttatt aaatccttag tcagcacttt tcaacctgat gagattactt cttcatttga
      421 ctggagaaag ggaagcaaag atctcgtacc ggactgcaga attctttctg atgtttcacc
      481 ttgagcgctg gagaaggaca gcgagatgct cggcaggaca atacagactc gtagtggcac
      541 cgacaactgt gtggcagcaa ttttactgag caggaccttt agctccagct ctaaactcgc
      601 tgggatgcaa agtaaataga agggaaataa aacaccgtct cttttatgaa aaagcacgga
      661 gataatcctg actgtactgt gatagggccc atgatttaaa tggggatttt aaattaagaa
      721 aggcaacacc gccttctccg agtgggtgca gtcggataag ttaca
//
LOCUS       KCOD01001816             677 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 202496pyr ultra-conserved element
            locus uce-7876, sequence.
ACCESSION   KCOD01001816
VERSION     KCOD01001816.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 677)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 677)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..677
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="202496pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>677
                     /note="ultra-conserved element locus uce-7876"
BASE COUNT          215 a          158 c          169 g          135 t
ORIGIN      
        1 aacagaattt gcaagtactc tgcatcagtc aggatttagc tgcagatcca atttaggaga
       61 attgagaaag ccctggatca ccctttgttt aaacactgtt cacaatgttc aaaaacatcc
      121 aataaatgaa actcaaaaca aaaagccacg ttgaacaaaa ccagaacaga aagccccgca
      181 gtggtgagaa gcacatgccg agtgctggct gatgcacacg atggcaaatg ttaagatggt
      241 gtgaagcgga ttcatgcagt tagcgcttgt tcacctgact gcccaacaga atcagcagtg
      301 gagagagcac tagtggacct ggaatgacgt cgagaagctg caagtagaag gaatggcaac
      361 acccacagga ttaacacaca ctgaacctga gacagaaaat aatccaaagg ggatgcgtgt
      421 gaccgctacc ggcaagggtg tttcatagtg acagggaatg gcgttgtatg tggatgcgta
      481 acaggtacag tgcaagcccc acagcgacgc ctccacctgt agcttttccc ctcgtgagca
      541 taaaactcat ttggaacagt cccacaccgg ctgcagctca gcaaaaacca cgttccagac
      601 tcgcaggtct ggcaggcagc cgtcatgaga acgtggagca catactacag agaagggttt
      661 agatgtgtct gatctaa
//
LOCUS       KCOD01001817             243 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 202600pyr ultra-conserved element
            locus uce-4398, sequence.
ACCESSION   KCOD01001817
VERSION     KCOD01001817.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 243)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 243)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..243
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="202600pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>243
                     /note="ultra-conserved element locus uce-4398"
BASE COUNT           88 a           46 c           55 g           54 t
ORIGIN      
        1 gaaaaaaaaa tagcaacgta gagtctagac agaagagatt gggttgaaat ctggaagcta
       61 ttcagtgagg ctacggcaca tggcagcttg actgcagaaa gagatcacat tacgctgcct
      121 aattacacat gaaaaatgta cacatcactt ttcttaaatg cttggaaaaa tagatgttca
      181 gatggcaact gcgagccagt aactgagcca gtcatacata gttggaacgc ctcacaaatg
      241 gca
//
LOCUS       KCOD01001818             719 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 202705pyr ultra-conserved element
            locus uce-4680, sequence.
ACCESSION   KCOD01001818
VERSION     KCOD01001818.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 719)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 719)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..719
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="202705pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>719
                     /note="ultra-conserved element locus uce-4680"
BASE COUNT          210 a          151 c          153 g          205 t
ORIGIN      
        1 atcatcagtc tactgacagt ggacaatcaa tgtaaaggta aatctttgga tgttcagatc
       61 catggtttta ttttgttgct atgcatttct gttcactttg cagttggcat tcatacattt
      121 gttaggaaat gcaggggaat ctttcaattt tgcataaaat gataatagta acttgcttcc
      181 tccttcttcc cattagagca tactactgaa attatttaaa ttgactgagc cttttaagca
      241 agtaaacaca ttttaactag cccaatcctt ccattcatgc ctactataga aattagcctt
      301 cactcttcct tcacttacac atggatacac acacttgcat ggacacaaga aaaatttctt
      361 ttctcctgtc agcattccta cccaacaata gttagattag tggaaatgag ggcctccgca
      421 gagaaaggac attcagccac agaaggctcc ctgcaggaac agctggtagg ggttaatggc
      481 tgctgaacct cacagccagg gcctattctc tattgtgtgt tcaactcctg ggaaggaggg
      541 agacttgtga cagcttctgg ggtgcatggg atcagaggta cagcagctag gtcagagagg
      601 tagtgttcaa aaggctagcc tggaattgca ataaaaatga actctgcagc ggggacagcc
      661 gagccttgaa atctgcaaaa attgggcgca aattgccacg taaaggatta ttcagtaac
//
LOCUS       KCOD01001819             489 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 202814pyr ultra-conserved element
            locus uce-4161, sequence.
ACCESSION   KCOD01001819
VERSION     KCOD01001819.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 489)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 489)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..489
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="202814pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>489
                     /note="ultra-conserved element locus uce-4161"
BASE COUNT          171 a           85 c           81 g          152 t
ORIGIN      
        1 taccgactca ataaaattgt ccttttctgg ttattacagc actaaaatat tgctgaaata
       61 gatacttaat tttatttaca gtgaaggaaa tcattcactg ggttgtgaaa gagttaataa
      121 ggaagaaaat cacacacagt gcgtgttaaa ggttagagga ataatcagtc atttgaaaaa
      181 cactacataa acatttttcc ggatgcaatt ttcagtccaa ggatacattt cccagtagaa
      241 atcagcagct aaaaaggaaa tcatttagtc tccataagtg ccaaattgta tcctgatttt
      301 tcctggtctg gctcaacttt caaaactagt ggttcaactt ctgcaatctt tcacccaatg
      361 actatataaa cacatcctta taagacagac ataatccttg ggtgggccaa tttatgttgg
      421 attatgaaaa tacttaaagt acagaatcgt ataatgactg ttgtcctttg gtttccacta
      481 aaaggaaaa
//
LOCUS       KCOD01001820             712 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 202923pyr ultra-conserved element
            locus uce-4766, sequence.
ACCESSION   KCOD01001820
VERSION     KCOD01001820.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 712)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 712)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..712
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="202923pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>712
                     /note="ultra-conserved element locus uce-4766"
BASE COUNT          197 a          149 c          121 g          245 t
ORIGIN      
        1 aaattgtcat tagtaaatga aggttttatt aattcacctt tttatataaa gaatcactaa
       61 tattcttata gatacagacc atgattattt ctgcttcctg ccttgcaaac atcttgtttc
      121 aaattaggtt tatctgctgt ctaaaactaa atacaatgaa tagatgtata ataaaatctt
      181 ttaattgtct tagcatatgt tgcttttatt aggagagaat aattgcattc atgggatcac
      241 ctacaaagtc ctttagaata taaaattgaa atggcttcac actgagtgca caagtccttc
      301 tgagccgtgc cattttcccc ttcactgcct cttgtccccc tttcgctgta aagttcacat
      361 tgaagtgtga caagagacac ttgacaactg acacatgctg gatcttatca gcagtgagtg
      421 cagtcatggg ccctgactga agagcgattg tcatttctac accatttatt cctctcctag
      481 cctcattgct tgcttccttt ctgaggaaat tttccctgtt aaagtactgt acttgtcgtt
      541 cttttttggt gcgtgtctgt ggggacgaaa ggattttgtt atgcattcat cccataggca
      601 agcctctaac agacttcctc taacctctta gtgtcaggac tgctctaagc tgattcaggc
      661 taataaaagc aacccaacaa agctttgatg gtgtcattac atcttcctta aa
//
LOCUS       KCOD01001821             402 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 203034pyr ultra-conserved element
            locus uce-1869, sequence.
ACCESSION   KCOD01001821
VERSION     KCOD01001821.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 402)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 402)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..402
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="203034pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>402
                     /note="ultra-conserved element locus uce-1869"
BASE COUNT          118 a           69 c           66 g          149 t
ORIGIN      
        1 tacttttctg tctgtaatct gcagtaagat gattccagat ttcaggaaaa atgatgcaga
       61 aatctatttc ttatttaatt tctgctgttc tttgaacggc agtttgcaga atgcatctgg
      121 gtgtacaact aatgacccat gagcaataac caactgttta agtaaaatgc actaggaaaa
      181 agcttttacc aaacagcatt ttaatatttt aaatagattt tccattgcag gctctttgta
      241 actggattag ttctctgata tgttctgaca gagctgttgt tagggatact ccattaactt
      301 tgtctgtcat cttattttcc ccagtatccg gcataacacc cttatatttc ataatttgta
      361 ttgctatcag tgctgatttg taaatgtgca aattataatt aa
//
LOCUS       KCOD01001822             579 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 203242pyr ultra-conserved element
            locus uce-7700, sequence.
ACCESSION   KCOD01001822
VERSION     KCOD01001822.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 579)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 579)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..579
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="203242pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>579
                     /note="ultra-conserved element locus uce-7700"
BASE COUNT          161 a          125 c          120 g          173 t
ORIGIN      
        1 ccattgggaa cctacgtggg gatgaaagaa atactatttt ttgtttgtgg ccctattaca
       61 aatgtctggg tttaagaaac tcctgcttct cccacattag cgctctagac aaatcttgaa
      121 ccacctttgt ggcaaggcct aacaaacgct gtcactttga cctaatccac ttttctgcac
      181 agctgtgcta aagtcacctt tagttttatc acattttaat gcaaacaagg ccggaagggt
      241 gcttgtttgg attgaagaag ctgtgacaat tcatctgaat gggaacttca gtaactggga
      301 agaaaaatgt gacagggagc tttatcactg cattgtacac agcaatctga aaattattgc
      361 ttctttaggg gcctattctc ctcttgaggc ctagcacagt ctatgctaag cagccagaca
      421 gctctgaatg gtttgccagt cctaaagaca gattttaatt ctattgtttg tgggtatccc
      481 tgactttcct aagaggattc aaagacaggc tgcagaacaa ggcagctgac ataagacttt
      541 ggccaatctt taaaattcaa atagctttcc ctggtcctc
//
LOCUS       KCOD01001823             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 203349pyr ultra-conserved element
            locus uce-7536, sequence.
ACCESSION   KCOD01001823
VERSION     KCOD01001823.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="203349pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-7536"
BASE COUNT          186 a          133 c          162 g          153 t
ORIGIN      
        1 aggctgggca tcataacagt aatttatgat tttactggtg tattatcatt gggtaataag
       61 agcaacttga aactgccaat tatctcataa gaggggtatc accttctatt ttgaatgact
      121 ccatcgatac atgcagattc tgcttgctaa caatccatca cattagcagt tgatgtgagc
      181 tgagcccttg gctcggcaac agagcgaggc gcggggaagg aggaatcgcc tggagcagtc
      241 agcaggtcac acacacagag tgtgcaacag caaactcagt ttacaaagag acatctgttc
      301 cattacttcg atgcattgcg gctaattaca tcctggccca tctgtgaaat gacagccact
      361 tattctccaa tgaaccatga aatctgtaca tgttcaatgt gggcagtgaa gaggagtgca
      421 ggggagtggg gggaggatgg agaggggaga acaggagaac aaggcgaagc accaaggtaa
      481 ctctccttcc tgtctggtgt cagccaggaa agaaggaatt ctggaagaaa ggccctaaca
      541 aaaaaaccta ctctaaccca aagattttgc atgtgtaggg gagcgagatg ttacatgcag
      601 atttctatgg tgtttctgcc tcatccctac ctgc
//
LOCUS       KCOD01001824             565 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 203449pyr ultra-conserved element
            locus uce-4656, sequence.
ACCESSION   KCOD01001824
VERSION     KCOD01001824.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 565)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 565)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..565
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="203449pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>565
                     /note="ultra-conserved element locus uce-4656"
BASE COUNT          209 a           91 c          108 g          157 t
ORIGIN      
        1 attgtacagt agaaaatcaa tagtcccagt caaataaaac attgaaaaaa ggctaattga
       61 atatggagga agaagtgttg tagttcttgt tctagtaaac aggcagttaa aactaggagg
      121 aaagtgtcaa ttggtaaaat tagctaaaaa agttactctg agtttttgcc ctacatttgg
      181 actatcaaaa ctgagggaaa cttttcaaag caaattgctg aggattgcca agttaacaag
      241 ctgttctgtg ctgcaaggga catatttatg gacatacttt caacaagaca tacctagtgc
      301 taccaagctg tgctgtacta aagagcagta agtatcagat aaactgattt ttaataaagg
      361 atttcacaca tgagaatgat taaacacagc tcaaatattc agaagtgtac aaacctttcc
      421 ctcctctttt cttctacaat agtgtctaaa caaagcagaa aacccaggaa attcaaagac
      481 aagaagatgc ataattcatg cacttgggaa gaagacactg caaagttaat tatgggtgag
      541 tactaggtct tcagtagtaa ttctt
//
LOCUS       KCOD01001825             698 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 203562pyr ultra-conserved element
            locus uce-7304, sequence.
ACCESSION   KCOD01001825
VERSION     KCOD01001825.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 698)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 698)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..698
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="203562pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>698
                     /note="ultra-conserved element locus uce-7304"
BASE COUNT          210 a          138 c          149 g          201 t
ORIGIN      
        1 gaaaggcatt ttgcacagca aatgtcctac actaacaaaa tcaaaatatt tttccaattg
       61 tcttgtcttc aaaaagcctt caatgactgt gaaggatggt tttcagcagg ttttaggccc
      121 tgggctattg gtatccaagt agttaaaact acatcagcac taatagctat gagctcatct
      181 tgtataagca catttttagt taaacaccgc aatcttggaa aaaaatgtta gtgtgcttaa
      241 acagcctggc tcagaatagc tcacaatatg acgcatacca caggaaataa agtggtatga
      301 ggcacctaca aaatattttt caaacaagtc attgaagctg taagccccat gcctcagctt
      361 taggaagtca cttattaaga atcaacacca gccgtgccaa gctaagctct tgctcttggt
      421 gattttccaa ttgaatattc agggccctgt ctcagtcttg ttttcaggga agtacatgcc
      481 tggaatgtta gcaagctatt tgctggaaaa aatgcccaca acaggcccaa tgttgatcac
      541 attaatgcat ttgagtgggt atagagtgca aatgattgaa agtgcttcca gatcttggtt
      601 gccggggaca aagcaggctc tgttctctga tctgatggtc atttttttca gtggaggatg
      661 tggtgcagga agagggaaca gtgccaatct ctgtctaa
//
LOCUS       KCOD01001826             525 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 203675pyr ultra-conserved element
            locus uce-5148, sequence.
ACCESSION   KCOD01001826
VERSION     KCOD01001826.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 525)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 525)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..525
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="203675pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>525
                     /note="ultra-conserved element locus uce-5148"
BASE COUNT          152 a          122 c          105 g          146 t
ORIGIN      
        1 gccgggagcg ccggagccgt cagcggatgt tgacagcctt gatgtcttgg cgggcaggat
       61 ccagcagcat ctcccactgt atggcgctag atatttaata aagtaaaacc cccaggatca
      121 agcaggctgc aatccctccc agctcctttc ttctgccttg ctcgagctct ttcaagcctg
      181 cctcagaaaa tcctttcatg cctccctcac cagactgaca ttttgacaag ttgccacgag
      241 tgacatctga tttgtacaaa tttcaagact aataaatcta cctgtcaaag cggaaacttt
      301 aaaaggagct aagcccagcg ggtatagttt aacagaactc aagttgatga aactgtagga
      361 tggagaaatt atatctgtca caatccaccc acattagttc tgtagagatg ttggcaactg
      421 aaacaaacgt ctttcacagc cttgtaaaag gagactgtta atactgtgag taacaagtaa
      481 cagttctatt tgtaaactat ttatttattt aatttttaat ttgcc
//
LOCUS       KCOD01001827             598 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 203784pyr ultra-conserved element
            locus uce-884, sequence.
ACCESSION   KCOD01001827
VERSION     KCOD01001827.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 598)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 598)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..598
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="203784pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>598
                     /note="ultra-conserved element locus uce-884"
BASE COUNT          187 a          121 c          107 g          183 t
ORIGIN      
        1 cgaaaactgt tgctgaatct gagaagagca aaaggcaact tttcaagcac cctttcccag
       61 tcagtggcaa tacagctaaa tgtggggggt aaattttttc agataaaatt gggcttgctt
      121 gccttttggt tatgtgcctt cttcctaaat ataaggattc ttctagtcag tcaaggggca
      181 actcacatgc caccatcttt tattcaaagc caggcacaga tgttccttct gcaggggagg
      241 ttttaattta tgaaaatgat attgtttatg catgaatgca ctctgcataa cacacagtac
      301 ttccatctga tgagagaaat accacagaac cagtgccaat gtcaggaaca tattctgcaa
      361 atttagtcgc ttaaatgttt aatgaatatt tggaaggcat ttccaaacca caagaaacct
      421 tttcaattac cttttcactg ttgataacaa aattcaactc ctccagccaa cgcaaagatc
      481 tacctaggct gtctcaatgt ttgctactgt gatacttcag agttttaatg ttatgagcaa
      541 cctaataagg aaaattaatc acgcattttg gtaactagag gctctatttt acaaatca
//
LOCUS       KCOD01001828             582 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 203896pyr ultra-conserved element
            locus uce-6988, sequence.
ACCESSION   KCOD01001828
VERSION     KCOD01001828.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 582)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="203896pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>582
                     /note="ultra-conserved element locus uce-6988"
BASE COUNT          184 a          112 c          109 g          177 t
ORIGIN      
        1 taggattaac ttggtaaaat atctcaaaac atgagcaata gaagccaagg cattttcatt
       61 cttttccaat ttattcagtt ttatttcttc ctctaaatgt atttttaaat atactcatca
      121 gtgcaactct caaagggtaa gtgtgtatta gagaaatggt cccccagatt atattgtgaa
      181 atgtatgtga atgtgcatga cttgaaccaa tgaactgtgg cctggaatga tgtcacagaa
      241 tgtgcagcat taagtggaag gttaaaccta cttgcatctc ggttcattaa acgtggttaa
      301 agtgcaaatt ccctcattct gacagtagta atcacaaggg ttcactttct ggtcacagcg
      361 ctgactttta aaccccacag agcatctgca gaatttcagt aaaatagacc tacataaata
      421 ttctgccttg tgctgaacag aatataacga cggcaagacg gcacacgctc acaggagacg
      481 tccatctgac aaaagtttgc tcatgaattt taaaataatg ggcctatact gcctgcagta
      541 ttattgtcag atgcactgta catttctata gattgatcca ga
//
LOCUS       KCOD01001829             472 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 204000pyr ultra-conserved element
            locus uce-3784, sequence.
ACCESSION   KCOD01001829
VERSION     KCOD01001829.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 472)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 472)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..472
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="204000pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>472
                     /note="ultra-conserved element locus uce-3784"
BASE COUNT          116 a           95 c          125 g          136 t
ORIGIN      
        1 ttaaatcatt ttcttatgat ttctccattc ctttgagtgc ttggaaaatg ggaatagttt
       61 gtgaagtctt tcagaggaag ggagagctct agtagtgttc tgctgtttct cttctggatg
      121 tctcgctccc aggtgaagta ggcaatgctg ccaagatgat gctgatcgtg aacatggtcc
      181 aaggcagctt catggcaaca atagcagaag gactgacttt ggctcaagtg actggccagt
      241 cccagcagac ccttctggat atcctcaatc agggacaact tgccagcatc tttctggacc
      301 agaagtgcca aagtaaagtt ctctttttca gatagtggca gaaggtcagt ctgggattat
      361 ggcaagagcc gagttcccat tccttccagg gcttaagttt tggggcaggg taagtaaaat
      421 ggaaggcaag ttgcttagaa atcctttgtc agtggtctgc tgtggccaga tg
//
LOCUS       KCOD01001830             657 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 204108pyr ultra-conserved element
            locus uce-5090, sequence.
ACCESSION   KCOD01001830
VERSION     KCOD01001830.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 657)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 657)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..657
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="204108pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>657
                     /note="ultra-conserved element locus uce-5090"
BASE COUNT          209 a          125 c          114 g          209 t
ORIGIN      
        1 tgtcaaacca gtaactttct tggtattttc ttaccacttt ctcctggttt tagggtgcta
       61 ctagacagag cgcattcgga ctacgataat gcatttcatc atctggattt ggaaaggttt
      121 tcctcatcac aacactcttc aatcagtcaa tttgccaata cctcagaaac aaatacctcg
      181 gacaaatctt tctcaaaaga cctcagtcag atactagtca atatcaaatc atgtagatgg
      241 cggcatttta ggcctcggac accatcccta catgacagtg acaatgatga actctcctgt
      301 aggaaattat acaggggttt aaatcgaaca ggcacagcac aacccgggac ccagacatgc
      361 agtacctcta tacaaagtaa aagtagcagt ggttcagcac atattggtat gtttatttta
      421 acaaactttc ttctagaagt tttaagatta tgtcagaaaa tccagaatat cattaggtca
      481 tccatactta ctgtggtctg ttttgatggt aatcttcaca tgtatttgct acactgaatt
      541 tatttgtgtg ctaacagtag tgtactgcat cggtatgtaa atattttaga aatacaaaag
      601 gggtttaagt tgactttttt gaaattaaaa atacattaat tgaaatgttg atataaa
//
LOCUS       KCOD01001831             553 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 204216pyr ultra-conserved element
            locus uce-1756, sequence.
ACCESSION   KCOD01001831
VERSION     KCOD01001831.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 553)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 553)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..553
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="204216pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>553
                     /note="ultra-conserved element locus uce-1756"
BASE COUNT          164 a          123 c          108 g          158 t
ORIGIN      
        1 cttgtgcgct gatagagcag ctctagaaca cagcaattct ttctatccaa gcttgcattc
       61 cagcacatcc cagcaaagag aaaaatgaac tagctaggat tttgcaagtt cacgcacaca
      121 actcagtatt ttattctggg actactgctg ctttaaggaa agatggtctc caaacggttt
      181 atgaagtgat agatcatata taaataggtt gtttgctctc agtacagatg ccatcattac
      241 taactacttt caggctcttt gagagctaaa taatttcgta atgcatcatt gagcatttag
      301 ttgcttcgat agcagatggt ttcaggggtc catctgctca cagcaatgtt ttcaacaagc
      361 ccccttcacc ttcaccaaaa ggttcagaaa cattagaata ttcattcctc accacaggtg
      421 cctttcccag agcctcccca aacacaggca tagtgggtcg ctcacttgga aagacagagg
      481 tggttactga aatatgtgac ttaatctatt gtgtgtagat tacttctgtc agcaaatgga
      541 gacagcaaca gta
//
LOCUS       KCOD01001832             532 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 204327pyr ultra-conserved element
            locus uce-1453, sequence.
ACCESSION   KCOD01001832
VERSION     KCOD01001832.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 532)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 532)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="204327pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>532
                     /note="ultra-conserved element locus uce-1453"
BASE COUNT          171 a          113 c           88 g          160 t
ORIGIN      
        1 ctcaaatact gttaaaattt gtaaataaat gctgttttta tacctagaag ccatgcttcc
       61 aaaattatga attgtttata aatcaagctc tatgacttgc acatttatgg taccatttct
      121 gtaaataatg aggcccatga cttgcacaca atacagctag aaaccacagc acagctcagt
      181 ttcaaaatga ttaactgctg catacagcta tgactttatt tgtaaggagc agttaggaga
      241 ggcaaaatga gtatgcagct ttccattata tacaggcata ttttcaatag ccgtgtgagt
      301 ctttttatgg ctccatttat gtcaatgtcc tagtgtcatc tgtaataaac tggcagcaat
      361 tagagccaca ataaacccca taatgcaaca caaacaacag gaagtctccc agtaccccaa
      421 cgctctaaat ttacatctcc ccttcgaaag tctatttatc accagagttt gcaagcccgt
      481 ctgctaaaga gcgctctaat taagatgtat ctggtgaaca agtgtctgct tt
//
LOCUS       KCOD01001833             789 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 204437pyr ultra-conserved element
            locus uce-127, sequence.
ACCESSION   KCOD01001833
VERSION     KCOD01001833.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 789)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 789)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..789
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="204437pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>789
                     /note="ultra-conserved element locus uce-127"
BASE COUNT          230 a          155 c          132 g          272 t
ORIGIN      
        1 aattgtatct actaacaatg cttttatgtt tgctgcacgt aaactaaaag aaaacatgct
       61 gccagtctgt aatcctgttt agtatttatg cagaaataaa ttagaaatgg tacctggaat
      121 attttccaca atacaaaagg caaatgtaag ttttattaag ttgaaaagga tgcattctct
      181 tctcttgacc ttgatttttt agctatattc tctatacccc tgctttagaa gtattattct
      241 tcatcccatc caattaccat ttctatcagc tcttctgaaa gattatgctt tttgggtgtt
      301 cttctgtaga tgtctttcca gtggcttcac ttgatgaatg tgacaagttt tgtgttttct
      361 ccctcccctc attgaattga aaagtttttt gataaataca ggccaataag tgcccaaagg
      421 cagtgtttca atggctgcta aatctttcaa ggttaggact taacctccgt tctccctaat
      481 tcaactgcaa ccttcagtct ggagccaatc aagaatatca gatgatactt aaacaatgaa
      541 ggatttctga tattcaggta cagcctctgt tcaataggat tgcaaattct ttgtgtgaag
      601 aaagtcggtt ttgctctaaa gtactgtcac aaaaagtgaa attaccattt gcttggaatg
      661 atgccattca tcattgtcag aatactaagc attgtaagta gctaggcctc tccaaattaa
      721 tgccttgttt tgcatcggct aaatttccca aatcctcgag gatgggtcat acaaaactca
      781 tctcaccgt
//
LOCUS       KCOD01001834             759 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 204549pyr ultra-conserved element
            locus uce-1008, sequence.
ACCESSION   KCOD01001834
VERSION     KCOD01001834.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 759)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 759)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..759
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="204549pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>759
                     /note="ultra-conserved element locus uce-1008"
BASE COUNT          262 a          163 c          112 g          222 t
ORIGIN      
        1 attcctcagt gcctgagcag ctattttgtt tcctcaggta ggtagtgact gatgagaagt
       61 gaactgcatc cctctaacac aatgatatcc atttccatta ggcaaataaa caactacaaa
      121 tcattcagat tatgtaaatg ctcaatgata tttgcctccc gctatcgcaa agttaggact
      181 gtccaaagtt ttataagcat attttcatca gagaacctac tagagcattg atacatttga
      241 ttttcagttt tttctaatga caaatcaccg tcttggaagc aaaaaggcaa ataactgatt
      301 ataagtgcaa tgaaagtctc ttgaatttac atatacattt acttgtaccc tgtcacattt
      361 tcttaacctc taaacctcca cacaacatat aaatgaactt gtctggaatt gtttttttcc
      421 caaattgcag cctatatttt ctgcagcact gatgcaatta tgccacctca attgcctcgc
      481 agtggaaaaa agcacaatgc aaaacttagt gtatcaagaa aataaagccc agaaaattgc
      541 ctgtgacaca caccaacaca aagacagcta cgcttcctca gaaagtggac agaataaaag
      601 tagacagttt ctattaacaa taacaagaca aaatacagag gccctttatc tcttaaaatg
      661 taaatttata caaggattca tgctgccctg ctgtaaatat caaatacccc ttaagaccat
      721 agaacaagaa tgaattgatt ttcctcctag tcttcgcca
//
LOCUS       KCOD01001835             287 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 204652pyr ultra-conserved element
            locus uce-3515, sequence.
ACCESSION   KCOD01001835
VERSION     KCOD01001835.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 287)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 287)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..287
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="204652pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>287
                     /note="ultra-conserved element locus uce-3515"
BASE COUNT           95 a           70 c           45 g           77 t
ORIGIN      
        1 gcaattagaa agatctcaca ccttccagcc ctcacctcca gccaaaccaa cacccacact
       61 tagcctctcc tttccaattt cagcatgttc agtgtaccaa taatgctctg atgcatttca
      121 ctcttgactg catacagtga gattgctaat caggattact cgattcagtc aacactgatt
      181 tcaataaaaa gacaaaaaaa aattatcata aatatagaga aagtgctggc ggcagtgaca
      241 ggtgattaaa atctcattca cttggaatca gcctgattca tggtagt
//
LOCUS       KCOD01001836             650 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 204761pyr ultra-conserved element
            locus uce-4648, sequence.
ACCESSION   KCOD01001836
VERSION     KCOD01001836.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 650)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 650)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="204761pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>650
                     /note="ultra-conserved element locus uce-4648"
BASE COUNT          184 a          129 c          156 g          181 t
ORIGIN      
        1 actgagctgc ctgagcagga gagggaattc accgtacaca gcaaactgtt atcccctaca
       61 atataatatc tggatttgaa gctgatattt aaagagggca cttgctttac ttatgagatt
      121 aaaggcaaat gctctcaaaa atgaagtcat gctgtgtttt gcaccttttg acacttatta
      181 actcaggtca ttaaaaagag gctaattaaa aaagaatgta aaacaaaaga gtcatttgtc
      241 tatcgccgag ctcggttctt catgtgcgct ggctggaggc actctccgtt taaaccttgg
      301 gtacagaaag cactgggagc cactggggca tgcttggagc ttgtcatggc ttttggcgag
      361 cctgtggtcc ggctcattat gcacctcata aagaagagaa gtcattgtca tcaaaattag
      421 ctgaagctgg aatttacatt catggaaatt ttggtttcgc caggggctgg acaatccttt
      481 taccagctgc agttaaagga agtgaagttc aataaatgct tagtgcttcg ttaaggcgtt
      541 tccaaatgcg cgtgagattt tacagctgat gagaatttgg gacaaacagc ctgtgaagtt
      601 cactggttct gggagatgtg ctcagcacat cccaacccgg cctcttggaa
//
LOCUS       KCOD01001837             880 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 204873pyr ultra-conserved element
            locus uce-327, sequence.
ACCESSION   KCOD01001837
VERSION     KCOD01001837.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 880)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 880)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..880
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="204873pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>880
                     /note="ultra-conserved element locus uce-327"
BASE COUNT          263 a          184 c          161 g          272 t
ORIGIN      
        1 taattagaat tatgccttct ttgtgccaag tgataattta ctgcaattaa ttatcaaaag
       61 atctactgct gtcaattacg gtacttgctc tttagaagct atttacgtat agctaaattc
      121 tgtaacaaag ttccatttta cttttattgt tttcaattaa actatcatca tttgccttcc
      181 ctctgccaaa cacaataaag gctcgttaag aactaatcat gctactgtga cctttttttt
      241 aatccaaaca ctagctagac ctgcactgag tcaacactcc tattgttaca cctgcaaatt
      301 gtacgtagag aggagcatac ttcagaatta atgagcacag ctgtggtctc tcttacattc
      361 aacacttgta aaatagacct ctttaaagtg ccattatcac aatattgata gagttattta
      421 tagtactgca aacgttccca gtcataacag agtccttgtt atcccccaca gcagttcatg
      481 ttgttgccat ctcctggact cattccacag tttgtgataa ggcaccacgt ggacaatcct
      541 ttacgaaaaa agacatcggg aaaacttcta cataagcaag ttttaaagct gggaataggt
      601 caagctgtca ggacccagcc tgcacaagac ttgtcatgtc cttgtgctgt gcagtttcct
      661 gtaatttctg ggtgggatgt gaagtgaaat tacaggaagc acaagctgca aaggatctgg
      721 atggcattgt ccaaacgaga gctgcttttt gcagttagta agactgtttt accataattc
      781 agtaaaacag atgtaagttc aaactcttgg tgtcagtcgc tgaaaacaaa taccacaggt
      841 gccaactttg gttgctaagg gaatacaagc tccttgggct
//
LOCUS       KCOD01001838             490 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 204982pyr ultra-conserved element
            locus uce-6570, sequence.
ACCESSION   KCOD01001838
VERSION     KCOD01001838.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 490)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 490)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..490
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="204982pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>490
                     /note="ultra-conserved element locus uce-6570"
BASE COUNT          162 a           98 c           79 g          151 t
ORIGIN      
        1 ttctagtggt accaacagca gtagtgtgaa atatatctac tccatttact cttatccatt
       61 gcacctactt tctttttccc tttaattttt atatatggta aaaatttcat tgaagagaga
      121 ttttagatga caggactgta attttaaaac caatagaaga ggtgtaagca atttgagctt
      181 agctgaagca taatcttagg ttgtcaagaa gaaacccatt ctccctatgc taatcaatca
      241 gtatatcaac caaccaatca tctcctcagc ttagcatata tcctaaggtt tgatatatct
      301 attaactgcc catcatgcag ctggtctccg gttgatgaga ttccccctat cttggcattt
      361 ggaggcagac aactgagcta tcacagcctc agataaatac taaagtggag atttcaatcc
      421 tgctcctgat agcaaagaca atccaggaat atagaacata tttttagaaa agaacacata
      481 gagaattaca
//
LOCUS       KCOD01001839             841 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 205093pyr ultra-conserved element
            locus uce-2456, sequence.
ACCESSION   KCOD01001839
VERSION     KCOD01001839.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 841)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 841)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..841
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="205093pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>841
                     /note="ultra-conserved element locus uce-2456"
BASE COUNT          284 a          159 c          181 g          217 t
ORIGIN      
        1 tgtaaatcca gagcctggat gttgcagcca gcgtaaaagc aggacagtgc ccttcgtgcg
       61 cagatgcggc agaggatcca caaacacgcg ctcagcattt atttaatctg aatggatcct
      121 aagtgggggc tttgctggtt tattttttgg agagcacctc gctatttgga gcacatctga
      181 ccaaatgtaa tatgtctgtc taaaaccaca tactgtattt attttgaaaa cacttgtaaa
      241 agtttgcatt ttccagccac ccttgggata aaggtttgtg aaaataaaga gcactttctt
      301 ccttcggatg aagaatcctt gaataagcag aaagaggcca agatgcaggt gatttattta
      361 agtctgtgtc aatgataatg atgtcatggt ttccagcaca ctgtgtccac cccattgtgg
      421 gacgaaagaa tgtcaaggac aattccaaac acaaaacttt gattgtgctg gaaccggaaa
      481 ggcacagtaa gaactccact gcgctcttca gttcaaaacc tgcatcctgc agacaaacta
      541 cagaaagcat gggagaaaga gcaaaggaga gggggcttat ctcagagtaa agctatgtgc
      601 tgaggtactg gagtagacag tcaggcacca gggataaaac accactgaat aaaacagcac
      661 ccgaattaga attattgtct atattgtgtg ttttgaacaa taaataagaa aaatatttta
      721 tcagaagaaa aatgtgttat ctaagagtca ggataaacaa tgagtagctt tttaagacca
      781 atctcttttc attagacatc aaggcaccac atcagagcac ttttagaaca ataaaaaaaa
      841 a
//
LOCUS       KCOD01001840             663 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 205204pyr ultra-conserved element
            locus uce-4308, sequence.
ACCESSION   KCOD01001840
VERSION     KCOD01001840.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 663)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 663)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="205204pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>663
                     /note="ultra-conserved element locus uce-4308"
BASE COUNT          188 a          139 c          129 g          207 t
ORIGIN      
        1 ttgtcattaa aagcaagcat actatcaagt gagaaagtag acttacattg caattatttt
       61 cctattagct gctgcccatt gctcctgaca ggtataaatt agatctcgcc aggttgccta
      121 cagattaatg agttccaaaa ctggcattta attgtttggg agtaagaggc agaaaaggaa
      181 ggaaaaaaat ctttatccac ctgtgattag aagatattct cctttctttc tgcttctcct
      241 ttctcccctg gcatcacttg ggtgataact gacacttcta tcagaggatt cctttcgacg
      301 cagcagaaac ttgcagctga ggcaaggcca gaattaataa tctgcgtgag caaacacaca
      361 gctgctgttt gtggagagag attctattaa cgaacagtga attctcataa ttagctgagc
      421 ggtttctgca gctgcctgcc tgaccccaga ctacacaaat tgtgggtggt gttcagcctc
      481 taaatcaatc ttacctaatt actataagca tgttcctcca gtcttaatga ctggggggaa
      541 tagacatttc cttacccatt caaatgttcc tcttattaga ttctcctttg tgcctttttt
      601 tctattagca tttctaaggg tatacaggtg tggttacaaa tcagaagcac agaagtataa
      661 ttc
//
LOCUS       KCOD01001841             619 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 205314pyr ultra-conserved element
            locus uce-2014, sequence.
ACCESSION   KCOD01001841
VERSION     KCOD01001841.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 619)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 619)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..619
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="205314pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>619
                     /note="ultra-conserved element locus uce-2014"
BASE COUNT          195 a          104 c           93 g          227 t
ORIGIN      
        1 aagttggcta ctgcatttga attgcaaagt agcaatcaat tagtttatca ttaatcagat
       61 aattttgggg ttcgtgaata atatgaaagg aaaagaagaa ataactacca ggataatttt
      121 caggaaccat ctctcagctt tataaactaa tcctcctcta atggcccttt ttaatgtaat
      181 ttataggttc atcattaccc tttttgtatt agtaattatt tctaaaatac caaagaacca
      241 tctttttttc aaggtccttc catgtgcctg atttacagct aggctggtgt tggactctgt
      301 ctttctgagg tttgacattt caaaatattt atagctcttt tacattaatg cctttctcat
      361 gaatctgaag gtgaccgtta tttctttcat cttgttgtaa ttaaatggat caactatagc
      421 tttattattt ccactattta tctgtgcagt gtgttagcac attcagatta gcaagtgata
      481 ttgaacatta ggtgaattat aacaaacaaa tatttcctaa aacatgcgtt aaacttgatg
      541 cattggctaa gaaatcgttc caagtgaaag cacaaaatct ttaatatttt attgatcaga
      601 tctaaacctt ctgcccaaa
//
LOCUS       KCOD01001842             785 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 205427pyr ultra-conserved element
            locus uce-7957, sequence.
ACCESSION   KCOD01001842
VERSION     KCOD01001842.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 785)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 785)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..785
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="205427pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>785
                     /note="ultra-conserved element locus uce-7957"
BASE COUNT          231 a          154 c          148 g          252 t
ORIGIN      
        1 gtactggaat gtcatatttg taatttttat ctttatttcc tctccgtggc gaatttctcc
       61 agtcatttca aagagtttgt tagccatttt ctcataaact ttggcattcc ttttagtttg
      121 tttcagctca tcaaaaaatt cttcccaaac cagcattaaa cctctcattt ctgcatcagt
      181 ccagtttctg gccctcctgt gtttctcagt ctgagaagag acaatgtaac tgggaatttc
      241 tgctgcagcc attgctgact gacctaaaag ggttttaaaa gaggacactt aatatagatt
      301 gagtttttag tttaggtttt ttgtagtgca agacatgcat atgtggataa agaatttgaa
      361 tgacaacaga acatatgaaa cctttttgca acagcttgaa gcttgagtgc acaaaatggg
      421 gcctacatct gacaggcagg aatttagtta aaagctttta aacagagaaa cgtcattttg
      481 atgtcacgtt tccatagcaa cagagcaact gcataagcta caacaacaaa aaccttttaa
      541 ctgaaagcca aagaatcagg acaaagttga caggccatca atattaaagc ttttaaacac
      601 tttaggttta acaagatcta tgcagccttt gagaagctac ttttaagttt ctacttcttt
      661 tttagctttc ccttaccttt taggcagaca atctgctagc agggggtcat ggtcgcctga
      721 acgagctttt aagttgtgcc ttgacagact ctctaggagg ttgcaaggac tgaggccatg
      781 tacac
//
LOCUS       KCOD01001843             679 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 205538pyr ultra-conserved element
            locus uce-7877, sequence.
ACCESSION   KCOD01001843
VERSION     KCOD01001843.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 679)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 679)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..679
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="205538pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>679
                     /note="ultra-conserved element locus uce-7877"
BASE COUNT          210 a          127 c          115 g          227 t
ORIGIN      
        1 aactcctatg aagtcgatgc aattaagtaa aatgagaata gaatctggcc taatgtttat
       61 ttcattttat cagactggat aatgctgtcc tggtggcatt aaatacagcc gatctctccc
      121 ctccccttcc atgcacacat gtttttgttc aaatctaact atttacatct atgtctctta
      181 gtattgccta caaatcagtc aaagaagagt aggtcatcta tcctgcccta ctgtttatat
      241 attaatcatc tggcaaataa actgctcagt atcctaccca cctcagtaat atttgtgatg
      301 taatttgttt ggatgcccaa atgtcaccag cgttgattgt aagagatgaa aaaaatgtac
      361 ttgctcagca caccaagctc tgggctaaaa tgtaagcatg aaatctctgg tttatttttg
      421 taataatgtt tacagctgtt taatgaccct gaaagggttc agtagtctgg tgttctgtat
      481 ttcttaacag gagtgtatta tgcttataac agccttagtt caactgtttc tgctgcaaca
      541 ataagaacaa tatttaataa aaattcaata tacattctga tctcagcaat acctgtttac
      601 gagttgctaa gaactgaagc agtctgtatt agagtattca gaatttgcca atggaccaca
      661 agataatgta gatatatgt
//
LOCUS       KCOD01001844             711 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 205648pyr ultra-conserved element
            locus uce-7623, sequence.
ACCESSION   KCOD01001844
VERSION     KCOD01001844.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 711)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 711)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..711
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="205648pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>711
                     /note="ultra-conserved element locus uce-7623"
BASE COUNT          246 a          137 c          154 g          174 t
ORIGIN      
        1 tcctcctgcc atcacgccaa gcatctccca tttgatggca tttccactcc tgagcatggt
       61 gtgtgcattt ttgtgaattc caaacccatg ttgcgttttg cactatggga ccatgtttgt
      121 aagcatgtgg cttgtggcaa ccaagataca agcagttcac acatgtcctg tggtgtactt
      181 acaattcggg ggacgcaggg tgttcgggat gaattgctga gaatatagcg aagcggaaaa
      241 gcaatgtgag ggaattaggc cacagcacaa aaacacctaa tattgatttt agctacaaac
      301 cgtagtttga ttatggccca taaggtagaa gcaagactcc ccgagcttgt catttctcat
      361 acatgcagcg atattaggag gtatcatcgc tgaggaagga agagcccagc accaagaaaa
      421 gtaagagaaa gagaaagaga aaagtagaaa atttagattc cctataaaga tgaaagaaag
      481 aaaaatcttc atattttatc ttagaataaa gaaagtttat ttttccagtc agattgtcta
      541 ggcttcaccc aaatataagg ctgcaaagac agcagttgtt attattgtga catgaagaga
      601 catctaagag gtgattcaat aacccagaca acgagagcat ccattctaaa agacagctgg
      661 aacagcgaca cagaatgtca tagaaaaaac attaacaatc aaacaacaac g
//
LOCUS       KCOD01001845             601 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 205761pyr ultra-conserved element
            locus uce-1965, sequence.
ACCESSION   KCOD01001845
VERSION     KCOD01001845.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 601)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="205761pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>601
                     /note="ultra-conserved element locus uce-1965"
BASE COUNT          192 a          137 c          108 g          164 t
ORIGIN      
        1 aactgggcgg cgatccaagt tcatctgggc cccagagaaa ggcaatgctt gtgtttagac
       61 cgcacaatac tgacataaca ttaacagatt tacatatgca aaactgtgaa gcaacaggca
      121 ttccccctca attgacccac agcttgtagt ggctgccgag ttattccctg cttaggctcc
      181 gtaaccaagt gggcgtcatg cgactaccat ctgggtacca cttatttaaa gctggcagtc
      241 tctctgtaat aggcaagctg gcaataagca ggaagggaat aaattgcatc atttagttaa
      301 catccacttg ctttgcggct gttaaaaacc catgactgaa taataatttg gttatttctt
      361 ttgccagaca atgctgtcag ccaaaagtac tacgcatgct gcaaaacgtc agcttgcaaa
      421 atttccactt taaaaataaa ttaaagaaat ttgcagtata atgcgagtta agaagttttt
      481 ctaatgctag caactcaaaa gcaatcaagc tctaaaaata aacatgcact actgtagtca
      541 ccagattctg cttctttgtt tttatcagcc acccatccat taaattacca aacatcacca
      601 a
//
LOCUS       KCOD01001846             284 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 205867pyr ultra-conserved element
            locus uce-6327, sequence.
ACCESSION   KCOD01001846
VERSION     KCOD01001846.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 284)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 284)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..284
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="205867pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>284
                     /note="ultra-conserved element locus uce-6327"
BASE COUNT           98 a           56 c           34 g           96 t
ORIGIN      
        1 aaatgcacag taaaaaaata tcatgtccgt atatctccct gacaggtctt catgcatttc
       61 acatttcaaa agcatgacag ggatcttatt tctaagataa attcccctat ctacttattt
      121 cctcgtgtat ttattgtgga tctaaccttc tactacaaga aataaataag caggttaagt
      181 agatgctatc ttttaacaaa tagtttcttc agactgtatt acaactttat gaatgtaaaa
      241 taaatccctc atttttaaat ccaccaagac gtacatttaa cagc
//
LOCUS       KCOD01001847             532 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 205974pyr ultra-conserved element
            locus uce-698, sequence.
ACCESSION   KCOD01001847
VERSION     KCOD01001847.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 532)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 532)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="205974pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>532
                     /note="ultra-conserved element locus uce-698"
BASE COUNT          155 a           89 c          110 g          178 t
ORIGIN      
        1 aaaggcaaat gggactgggg ggatacagaa ggcgctgttt gaagcttgtc ggtctcagtc
       61 tggaagatgg tctgcaaaga agtcttttgg cagcacaaca gggggtttgt ggattttttt
      121 ttcccgtgag agatcttaac gaactgttct gatttttttc cgaaagggac cattgcaact
      181 ttttttggag ggagaaaact gatgtcttct atgcatccga ttcttaacaa agctgcaggg
      241 agcttgaaaa aatgcagact gtacaaacgc ttacaaataa ctgaactgac ttaagatcag
      301 agtttacttt tcagatcaaa ttgtttatgg ttttacaaat gtgatttcta cttgccaact
      361 tttttttttt tgtaacttgt tcccttatac ctccttgatt gaataccaga cagcctagac
      421 ctcagtacaa aaaggtattg aaacattttt gatacataac agacctcagt cttttttaaa
      481 aattaatata ttttcaggcg tatttttgta cagtgaaaag ggaacattct tg
//
LOCUS       KCOD01001848             685 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 206083pyr ultra-conserved element
            locus uce-6831, sequence.
ACCESSION   KCOD01001848
VERSION     KCOD01001848.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 685)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 685)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..685
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="206083pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>685
                     /note="ultra-conserved element locus uce-6831"
BASE COUNT          217 a          149 c          116 g          203 t
ORIGIN      
        1 tttactgggc tatccccgtg cataaattta cggagtcact cacagagtca cagctgaacc
       61 cacttctgct gaagaggtgc tgaagcactc ctcaaggcca ctgcgaccat ctcgcaacat
      121 ggatcccagg gaaatccagc tctatacggg gataatttag aatctgtacc ttcatgctgc
      181 acctagtgca cacaacgtac accctgtact cttaagcgcc cttcctgcct ttcctagtat
      241 tacagataat ttgctagttt cagagtgtac ttattacagg actgtcagag gagtttttgt
      301 ttcaacaaca cgttaacttt actgcactta taaaaaacat tatgtgtccc ctgtgattct
      361 gtgtgtttaa gagcagcgaa atgttattga tcccagtgtg acaaatcaag agttaggtaa
      421 tgtctacaaa actcaatttt ctgcaagaca taaaaccctt tttatgaaac ccttccttaa
      481 gaaattcagg aaaaatacac acaaaaaatg agagcagaaa ggtcagaaac tatttttttt
      541 taattaatgt aatccaattc tagcctaatg acaggcatat gaccaccgag gccaatttaa
      601 agcaatattt actctcacta ctttaaaaca gtatgtgaaa actccagttt tctaaaatcg
      661 ctttgatatg attaagaatt gtatt
//
LOCUS       KCOD01001849             718 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 206195pyr ultra-conserved element
            locus uce-6019, sequence.
ACCESSION   KCOD01001849
VERSION     KCOD01001849.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 718)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="206195pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>718
                     /note="ultra-conserved element locus uce-6019"
BASE COUNT          213 a          147 c          204 g          154 t
ORIGIN      
        1 gaagcaaagg ctgcaaatga gtcagacatt ttgaaggggg aagcagaagg agtggagaag
       61 agcaggagaa agggagagct caacaccaca accaagaggg gcctgccagg gccacacagg
      121 cctcctggtg ccttaacccc tcaaaggaaa gaggggaccc cccttctttg tttttaatta
      181 cttcccattc taatcttgat ttgcatgtcg atctctcaga actgggccag ggactctaca
      241 aagcccttgt cagcaactcc cccaataata aacaggaaaa ggcttaaggg gaaaatcact
      301 tgcatgttaa tgagactgtt tgctggagtc aagagagaaa acagcaaaca aacaaatgga
      361 ctgaattcca gcggcagctg tttgctcctt aatctcggct tgtcagagct gccctttgat
      421 gggacacaat ctacacaaac gattgtgcta aatcttctaa tctacgtcct cattattaca
      481 tcccttctta cgcatgtaaa tcagggacaa actcatttta atatttagat agattatgga
      541 agggaagggg aggggattgg aggggaaagg agctgctggt ggtgtctgct cctgccggtt
      601 aggaggggtg ttaatgagga gcacagggag gggagcaggg cagcaacgga gcacctgttg
      661 tcgcggcaaa atggggaaaa ggggcgagga ctggagaaga tggcaaggtg atgtgaca
//
LOCUS       KCOD01001850             675 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 206305pyr ultra-conserved element
            locus uce-3490, sequence.
ACCESSION   KCOD01001850
VERSION     KCOD01001850.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 675)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 675)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..675
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="206305pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>675
                     /note="ultra-conserved element locus uce-3490"
BASE COUNT          204 a          109 c          157 g          205 t
ORIGIN      
        1 ccttgcagaa gggaagatga ggtttaatcc acattataag gaagattttg gcttcttaaa
       61 atgcttgccc atgcttttag gatcttctgg aagtttactt attcaatcga gtctgaatga
      121 aatgcagaag taagatggaa aactcacaaa ccatgcagca ttttcatagt taccttcctc
      181 ctctgccttt tacttgaggg cagaactagg gtagagaaat aatttttgtt ctcttctgaa
      241 aggttacagt aataaagaaa ctcttgttaa catcagagta tatggcaggc aggagttttc
      301 acagtctggc attgtttatt ttaccagcaa tttggaacct tctgcactct taaaatattg
      361 gcaagaaaat atttaactgt taactgttct gtggcctgcg tgtgtttgaa gccctgggga
      421 ggaggaatgc ttggggaaat cgggtttttc tcagcttatg attgaaacca gaaggtgcag
      481 aatattggta gaaggtgaaa gcaatgtgac ttcaaattag aattttaccc aaatgtggaa
      541 ctgatgggag aatgtcaaac aggtcacgta tgagcagggt cctgctaggc tgatggagca
      601 aacacaaata ggcactacag aaatgaattt gaaaaggtga tactaattgt gagtatttgc
      661 atttgtcctg gcttc
//
LOCUS       KCOD01001851             572 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 206410pyr ultra-conserved element
            locus uce-4102, sequence.
ACCESSION   KCOD01001851
VERSION     KCOD01001851.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 572)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 572)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..572
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="206410pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>572
                     /note="ultra-conserved element locus uce-4102"
BASE COUNT          168 a           80 c          109 g          215 t
ORIGIN      
        1 aagggggttc tgagttcttc ctttatggct agaacagtaa taaatgatgc tcctgtatct
       61 gtaacataag tactgctgtc tgtcagtaat gaacttcgca actttgtttt ccaaagtaca
      121 ttttattttg atcggtccag tatattgcac taattctttt agttattttc attatatgaa
      181 atctacaagg tgtgtcagaa gagatgaatt agtctattta aatgttgaac tgatacttgt
      241 gcagatttta aatttgcagt aatctgggtt tagcaagaaa aatgacagtt caccagtgtt
      301 tagttttata ttgaggtgct caggtttgaa taaagtggtt tttttgttta ccgtttctta
      361 ttgagagttt cagaaagttt tattgcattt gtacagttcc agacaagatg attcactgta
      421 tgggtcagca tttaagatgc ttacataaat tcatggcaca gctaaatata agcttgtcca
      481 gtggcactcc agttatccta tgataaattt ttaaatgttg aggtaatttg gtatcttatc
      541 acatccattt agaagtacga tcaaagtagt aa
//
LOCUS       KCOD01001852             707 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 206519pyr ultra-conserved element
            locus uce-149, sequence.
ACCESSION   KCOD01001852
VERSION     KCOD01001852.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 707)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 707)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="206519pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>707
                     /note="ultra-conserved element locus uce-149"
BASE COUNT          238 a          127 c          132 g          210 t
ORIGIN      
        1 atttgattaa gtttttaaat caatattata atcatttagt tcacaaccat gcacatttaa
       61 cagtcaattt aactcatctg gtatctcaca caaccaacac aatatgcaag aaacaactgc
      121 tgggaattgt ttcagatgct ctaaagtatg ttaatttcca aagcaaaatg acttgtgctg
      181 tgaattttaa cgcacttgaa agcctgtact ttctctcgtt ctggagcaca aattttgcat
      241 gtctgaagag ctgtgattca tcttaagaaa acccatcttg tgttaaatgg aatggaaact
      301 ggactaagtg gtcaaatgac aagtacattc atattcaagc tgtattataa atgcatgtac
      361 agtaatttac gtctctcagc taccacaaaa ggctcttgat aagcaggtaa tttgctaaat
      421 ggactccttt atccaagtat tcgaagggcg ttacaagaaa aatctgcaga ggcattaatg
      481 tgacgtaaag gtcaagcatt gtgacatacc tttcaaataa tcccgcctaa cttgcgatat
      541 gatgaggagg ctgctggcag cactgttcag tgtgaagccc ttgatgtggg tctcagcact
      601 aaaagaagca gacatttaga aaggaattac tgacatgctt ctgatacgat aataaatggt
      661 tgagcaccaa ggtgaaatta taaaaactac tgttcgtatg ttaaaaa
//
LOCUS       KCOD01001853             610 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 206630pyr ultra-conserved element
            locus uce-5560, sequence.
ACCESSION   KCOD01001853
VERSION     KCOD01001853.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 610)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 610)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..610
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="206630pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>610
                     /note="ultra-conserved element locus uce-5560"
BASE COUNT          180 a          108 c          128 g          194 t
ORIGIN      
        1 ttttataaaa gctttagaaa tttctgccat agcccttgga ctaatttgat gttggagacg
       61 gagatgtttt aaaactgaaa atgttgtttg aattctggcc tgcaggtgag ataacagcgg
      121 gaagtgggga aggagtgaaa gcaaacacca gttataaagc tttttaaaac atggttgctt
      181 ctagaattat actgttagca ttaactaccc tgctaaatgt aatttcagag cagcttggct
      241 atgctgggac caataatgtt tcagcagatg ttaacagtga gggaatttaa agattacaga
      301 gtttcatggg tgtagtaaag ctgcagtggg aacagaaata ttgccgtagc tgttatgttc
      361 tgagtgcacc acatttactg acaagtaata catgagtgat agtgaggacc atgggaacag
      421 aactttatac ttactggtca gcagcctata aattccataa attaaacaaa gttttatgta
      481 tttttcattt cttttcagaa tgatcttctc taagggcctc tgcttcatgt taattccatc
      541 gacaaagcgt gtctttcagc cataagggta tttacacgca tgttcccttt tcttcctccc
      601 actgccctcc
//
LOCUS       KCOD01001854             457 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 206737pyr ultra-conserved element
            locus uce-4216, sequence.
ACCESSION   KCOD01001854
VERSION     KCOD01001854.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 457)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 457)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="206737pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>457
                     /note="ultra-conserved element locus uce-4216"
BASE COUNT          135 a           89 c           78 g          155 t
ORIGIN      
        1 ggcccaggga acagagatct tgattgttaa atccatccac actttcccta gggctataat
       61 atgccaaaaa cattaaatag cccacttaat acataacctc attctgtatg cttgactatt
      121 ttgtttttaa tttttcttcc ctttccaggc tgctcaaatg agatgggatc aaagaaaaaa
      181 attatcctca ctggattttg ttaaaatatt aataggttag ggttgactgg ctaaattgaa
      241 tatctatgct gatcttgctt gcatgtttaa cttgtgctta ggaaaatatg tttcctaggt
      301 gataaccttt tatgtaccag cctgacttca ttgaaatgca tagagataaa aatatgtcac
      361 actccatggc catgctattc ttgtgtggca gtgtgattat tcagatgata attgaccccc
      421 acctgtagac agctcaaatt ccgtagtcaa tcattct
//
LOCUS       KCOD01001855             543 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 206848pyr ultra-conserved element
            locus uce-4223, sequence.
ACCESSION   KCOD01001855
VERSION     KCOD01001855.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 543)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 543)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..543
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="206848pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>543
                     /note="ultra-conserved element locus uce-4223"
BASE COUNT          196 a           99 c           96 g          152 t
ORIGIN      
        1 ttctttaatg aaactgttaa aataatcttg caagagtccc tgagtttaaa aagaagcaca
       61 aactatattt aacgtggaaa tataaataca taaaaacttc aacatttgaa actggaggct
      121 aaagtatgta aagtgcttac ttagatgata tgaataggat actggcaaac aaaagcagca
      181 gtgtgctcct agaatgctgt gcttcaagga gtttccttgg caacagaaat gcagttccaa
      241 aagtagacag aactttcctc agaaaacata ctattaataa caaccttccg gaacaacttg
      301 gaacaatttg actacttggc aataaaatgc caagtgttct gcaaattaat ctaacacata
      361 acagttatat gtttctcttg cccataattc tcctgaactg ggggcctgag ttctctgcta
      421 ttagaggata caaatgtgca aagcggttcc aaatgctgca caaacagaga gacggctcaa
      481 atagcagcct ataaggatca attaatgttc ttcgtatcat tttaacttgt aaaccagatt
      541 agt
//
LOCUS       KCOD01001856             419 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 206954pyr ultra-conserved element
            locus uce-3138, sequence.
ACCESSION   KCOD01001856
VERSION     KCOD01001856.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 419)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 419)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="206954pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>419
                     /note="ultra-conserved element locus uce-3138"
BASE COUNT          108 a           92 c           67 g          152 t
ORIGIN      
        1 agttttcctt gactcctgga ccagtccata ccctgcctta ccttttagct gtttcacatg
       61 ggtcccattt ttattggact cttgatgccc actgatgttt tatgcataat gatgctcatg
      121 tttaattgag ctgtgagctt cagtttaatt atgagccttc acgatacctt cagcactttt
      181 tcttctctga ttactgtaac tggttccctc caaccccttt aaaatcctta atctattaaa
      241 ccacttgtag acaagtcatt tttaggagaa agcctaatta ctctactgca attatcttaa
      301 tgcatcctcg gtatttaggg ataataacct gagtgaaatg cactttgtgg actattccaa
      361 acattcccat ttaatgatct gagtcacact gtgtgcttaa aatgaattta tgtggagaa
//
LOCUS       KCOD01001857             673 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 207063pyr ultra-conserved element
            locus uce-7859, sequence.
ACCESSION   KCOD01001857
VERSION     KCOD01001857.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 673)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 673)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..673
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="207063pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>673
                     /note="ultra-conserved element locus uce-7859"
BASE COUNT          221 a          116 c          118 g          218 t
ORIGIN      
        1 gaatactgta gtttgtttgt gggcatggaa gttaatttta atgccagttt ttatacctga
       61 gatactgtaa atgagtatct tcaacttata ttgcccatcg taaacttttt taacctgtga
      121 gtcattttca aaataataaa cgtaactatt ccataaaaat atctcaacac agaagagcca
      181 gaaaagtgaa ggacatgaac agatggcaca tcaatcttct gcatttatac aatttgtttt
      241 ttaatgcaaa tagtgtgggt tgcctgctct tgccttggat attgttccaa agacgagcac
      301 attttcttat ctttctggat caatgtgaca tttgcagtta tcataaagtg ggagcccatt
      361 taatgatgtt aatgcttcct taatgtaaaa ataaaatcac ctcctttata aaagcaaaca
      421 gattaaaagt cccaaagaga ccattgaaat ctgtgacatt tgcagttact ggtggctaga
      481 tggcttgatt atacacaggt atatcttaaa agcattgttt atgctcatta atcagaacat
      541 taaataggaa tgctggagtc tccccagcag ttttaaagat gtattaataa aatggaggca
      601 gcatttcatg cagcctgttt agatcattcc caaaaactgc aaacaatcaa acttatggcc
      661 ttatggcagc ctg
//
LOCUS       KCOD01001858             579 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 207176pyr ultra-conserved element
            locus uce-7857, sequence.
ACCESSION   KCOD01001858
VERSION     KCOD01001858.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 579)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 579)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..579
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="207176pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>579
                     /note="ultra-conserved element locus uce-7857"
BASE COUNT          160 a          127 c          130 g          162 t
ORIGIN      
        1 agtaagcctc tcgctgtcat tctagtataa acatgtcatg agaaatgctc gcttaaaaat
       61 cagtgtttgt caggttcaac tccagccatg gcttcccggt ggaggttggt tcggatgcca
      121 gcatcctcca gctgaaggag gcagttgccc agcgacaggg agttccagct gaccagctgc
      181 gggtgatttt tgcagggagg gagctcagca atgacttaac actgcaggta agaatccctt
      241 ggtagcttct cccctggacg gctgccagct acactgcctc tgcctctaat gctgccaatc
      301 tgatgttcat gcctgagatc taataaaata aatagtgcct ggggattcct tgaactttac
      361 tccacactgc ttcattaatt ctgaccttct taattatgca ttaaaacagc aagcaggaag
      421 ggtagggaaa gagagagaat atctagtgaa taaatgttta ctgattacag aagcaagcca
      481 tgcacaattt ctgtatctgt tcaatttcta tcttacttat tccatttgaa tcttaatgaa
      541 gaaggatgtg aataaattgc tctaaatcag gctgcacag
//
LOCUS       KCOD01001859             475 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 207282pyr ultra-conserved element
            locus uce-8026, sequence.
ACCESSION   KCOD01001859
VERSION     KCOD01001859.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 475)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 475)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..475
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="207282pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>475
                     /note="ultra-conserved element locus uce-8026"
BASE COUNT          160 a           60 c           92 g          163 t
ORIGIN      
        1 aagaaagaaa ctttcccagg ttgtaataaa atattaatac actaaatgtt ttctactggt
       61 cacatttagc taggcagaaa tttaaaaatt ctgctggcat gtttgtttgg aataaaaaag
      121 cctgtaggtc aagtctttct gagagaatgc caaatgtctt tgtgtccagt tatttatggt
      181 ttcagataat tgtacagaaa atatcaaatt tgcatagtgt gattattgct gattatttat
      241 ctagcagtca aaatgtttca gtggttccta ggatgacaga ttgacaagta cttaaaactc
      301 attcatttta tgaaatttgc atgtaattag gcaataatga aggggatgtt tgtggacagc
      361 ggattatact acaatatact ggaagtgatt caaatgcttg acaaagtgtt aacattatct
      421 tcagtttcaa ctaagtcttg aatgtttggc tcaaaaatga aatgggttat ggaaa
//
LOCUS       KCOD01001860             652 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 207391pyr ultra-conserved element
            locus uce-4732, sequence.
ACCESSION   KCOD01001860
VERSION     KCOD01001860.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 652)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 652)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..652
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="207391pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>652
                     /note="ultra-conserved element locus uce-4732"
BASE COUNT          209 a          143 c          118 g          182 t
ORIGIN      
        1 ggccctgggt tccgtttcta ttcagggctg atttataacc caatggaaac ctgatgtaaa
       61 catatgatca atgagtccca tcattgctaa taataacccc caaccggcac actccctcat
      121 ctccaaagcc atccctttag gctattagtt tcgtccagct aatcctctcc acttgcctgc
      181 tgcttttacc ttggccatcc gttcagtcca gcagactcag aagtaatttt atacgcagca
      241 gagagcgggt ggaattgatt tttcgctcag tgctcagttc ccatctgaat aattatcaat
      301 tttactgcct cataaaggga agagtcaaaa tttcaaatca attcaaaaga gcttctgaga
      361 ctacagaaac tgtgcatgag aataaaggtc aaagttgtca gtgacctcgg gagatgatgt
      421 cagatattag taccctgaat agttgacatc aaaggcactc aatatgatat gactagtgct
      481 aatgcaaatc atatttatgc tgactgctgg agaccagcca ttaatattta aaacagtatg
      541 tgaaagcctg cattcaaaat aaatataacg tattccgcag aatctgaagt taataaagac
      601 agatcgctgc ctagtaatac actaaatgaa agattactgc atattaacag ac
//
LOCUS       KCOD01001861             755 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 207503pyr ultra-conserved element
            locus uce-819, sequence.
ACCESSION   KCOD01001861
VERSION     KCOD01001861.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 755)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 755)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..755
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="207503pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>755
                     /note="ultra-conserved element locus uce-819"
BASE COUNT          243 a          143 c          137 g          232 t
ORIGIN      
        1 agtagcattt agatcaaaag cttcatgggg attaaccctt gtcttgttac tgctgaccac
       61 aaaaactaca tacagaagaa tacagaagaa ttgctaaaaa caaatacact agaatcaaaa
      121 gtttgttgtc ttgaagagtt aattctggca gagaggtgac ctttatccct acgtactcac
      181 tcattttttt tttatcaaac ctctccaaag ggactcatca tatgcggggc tctatgaaga
      241 gaaaaagaag agcattgtcc ttatcacctc cttccagaaa gtggcagagt aataggactt
      301 tgtaaggcga aatgaagccc agtctgatgg ctgctgatta aaaattgact ctgccacatc
      361 aaagaagagt tgaaggtgaa aatgatgatc acttccctct cccagggacc ctgcaccatt
      421 tcttttattc aaccttgaaa ggttctttct gaataagata atatccctcg agtccattct
      481 ggctaggcgg catgggaaaa tgtagatcag tatgcctatt ctctatgaaa aaatgggatt
      541 ttgttaatga catagcactc taaagtgatg gcttgtatat ggtaaatgct gagaaattaa
      601 ttataaaatg cctcttagac tataaatcaa attaattgct agtatacatc tactaaaaag
      661 acaactgtaa actcaaactg tattccctgc ctgttgctgg agatttctgt atttctctag
      721 cctgcatttt ttgttttcac ttattttata acgaa
//
LOCUS       KCOD01001862             582 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 207615pyr ultra-conserved element
            locus uce-4, sequence.
ACCESSION   KCOD01001862
VERSION     KCOD01001862.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 582)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="207615pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>582
                     /note="ultra-conserved element locus uce-4"
BASE COUNT          198 a          100 c          107 g          177 t
ORIGIN      
        1 agactcttcc tctttcaggc agaggacagt ctcccaccat tcaaaggtat ctgttactac
       61 aacattcaga agtgactaac gctaagtttc atttcttaca gattctttag aaggaaacta
      121 tatctaaaaa gtgcagatat gtttttattt cttttgcagt tcaggggagg ggggagggaa
      181 aagcatcact gatttgtata ttaaagtaca agcatctgtc ctactgatga cattctaggg
      241 aagcacatta gcataaaatt taacgatgtc aaataagtgg atgtgaaata gggactgcgt
      301 aaagacacta tttccaagcc tgacagaaac atcactgttt agaaatgcaa atgataccat
      361 tatgttcaat aattatatga aaatatgaac agttcagcat gttttccagc cctgatggcg
      421 gttaatggga tgtacgctta tgtaaataac tactattaaa gctaatgctg aaaaaaacta
      481 ataaattcat actaaagcaa ctgatttagt acgcttttaa accccagcag tgctcactta
      541 ttagaaagga gtgcattctt atgtttagaa ctcattactg tt
//
LOCUS       KCOD01001863             697 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 207724pyr ultra-conserved element
            locus uce-3910, sequence.
ACCESSION   KCOD01001863
VERSION     KCOD01001863.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 697)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 697)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..697
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="207724pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>697
                     /note="ultra-conserved element locus uce-3910"
BASE COUNT          235 a          117 c          115 g          230 t
ORIGIN      
        1 atgttccttt ccaacaactg ctacattgct gcattaaagt tcaaattcca agcgttcaag
       61 gatgtaaata tattaaacaa tgcatctatt tgtgcaaagc attctttatg aggaacatcc
      121 atgtgctttt aatcagtttc atgctgagtg aaagaaaatt gtaaactatg cattaaaaga
      181 aggtttggtg aaagttatat cttctgcatc ctaattcaat gcttcccctt gctttcagtg
      241 ataatataag taatcttcta gcaacattca tgaggaaagt ttgatgtgga tttgcactag
      301 tggagctaca ttacaatggg tagatttaag gtattataaa atgagttttt ggatttgtta
      361 cagaggtatg aaacccctaa gacacagaca gataggactt ccaacatatg gcaaccactc
      421 ttattacaaa acaaaacagt gttaagtcaa agtacctgat tacaattcac tagtgctatg
      481 cagctttgat agcaggctta tatttaatgc catagaaaca atataattta tttttctgtc
      541 ttcccttatc ccttcgttat tgggtttgta ggctttgaaa ccttaagcaa aaggacaaaa
      601 tataaattat agaaaacatc aaagtatcgt gaaatcaaat gacattcctt acgatcctta
      661 caaagatatc taacacattt cttatgtgca gtttggt
//
LOCUS       KCOD01001864             751 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 207834pyr ultra-conserved element
            locus uce-7840, sequence.
ACCESSION   KCOD01001864
VERSION     KCOD01001864.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 751)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 751)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..751
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="207834pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>751
                     /note="ultra-conserved element locus uce-7840"
BASE COUNT          224 a          135 c          152 g          240 t
ORIGIN      
        1 gatctgagca cgagccagct cagtgcacct cggctagggg ccgtttgtct catgctcttc
       61 tctatccaga tgtatgatcc agggagaagg aaaaaggagt tgaggtttaa actcttatca
      121 ctaaagtgag tctccctcta cattaaaaaa ctatccagac attgtaacag gaatgggttc
      181 agttcttatg tcataaattt gtgtgtgtag aaaaaagact tattggcgaa tttagcagta
      241 tttttcgttg aactggcagt tgctaaccat tacaccagta tttatttgat tcttaaagag
      301 cacaaaagca tggactacaa ataaagaaga tggagtaata gcttttgact ggaccactag
      361 ctttaaactt gaaatgaagt gtccagtttt gagttactgt gtccaaatgc catttgtaca
      421 gtttgaaaag tgggggcatt tttccagctt gtcactgtta gctgtagttc attccagtga
      481 atgatatcac tgaaggagca gttgttctgc tataagtact tcactcatga ctggaatgta
      541 ttaaatgtat taatctgtgc ctgagagtgt aatttaggga agccctacat ttgacacatt
      601 cttgtacatc cttattttat tgccttatcc tgcaggtaac aatgtctcaa aagcaaaggg
      661 acgggatgaa gttaaaatta catgtcacca aatattatat gcactttttg ccactcattt
      721 ctctgtcaga attacggatt ttcaacaaca t
//
LOCUS       KCOD01001865             335 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 207938pyr ultra-conserved element
            locus uce-2889, sequence.
ACCESSION   KCOD01001865
VERSION     KCOD01001865.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 335)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 335)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..335
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="207938pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>335
                     /note="ultra-conserved element locus uce-2889"
BASE COUNT           90 a           80 c           55 g          110 t
ORIGIN      
        1 tttttttttt tttatttctt ccaggagtgc tgatgataag aaaagcaatg tctaaatctt
       61 cttaatggtg tttatgcaag cagttttgct tagctgcagt ccctgccacc ccctccccca
      121 tccaccctcc cctcccatct ccctgctaat atcgctgctt cattcctttc cctgttggct
      181 attactatgg actacagcga atctaaaact aaataatccc cttagtgtca agttttctgg
      241 gctgagcaaa taaatctaac caaatgcatt atctaggtag aggaggctgt tgtaaagata
      301 aaggctattt tactttaagg caaagagtaa aacca
//
LOCUS       KCOD01001866             774 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 208040pyr ultra-conserved element
            locus uce-1253, sequence.
ACCESSION   KCOD01001866
VERSION     KCOD01001866.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 774)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 774)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..774
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="208040pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>774
                     /note="ultra-conserved element locus uce-1253"
BASE COUNT          216 a          159 c          148 g          251 t
ORIGIN      
        1 aagacagcaa aaataaccct gatgttctcc atgagccatc aaagctttca ggtcttcagg
       61 ggaaggaatc tccttttcac tatgtgcccc ctcaaaactg ttttgattca tgaaaatgaa
      121 tgttactgtt tttaaattga ccagtcatca tgtaaggtcc tatcgttcta aatatttgat
      181 gagaagctaa ggtctctcca aggcacctct aataataaac ttcctgcagg aaatttagaa
      241 aggattatgt gtttcaagga ggagccggcc gcttaaagta aattctcttg ttgagtcatt
      301 tattccctta ataggaattt tctgatctgc tgtcattctt gttcacacac tgggtgtcac
      361 tgcctctaaa ccacttgtca ttctttaatg gaaacaaaat agtcattgca gtcagagccg
      421 caatgtcatt ccactacccc ttgctgcgtc ggcaatagtg aaaatgacag agcggctctc
      481 agtaggggta attaaaatgt aaatattgat attttattat ttgaaattac tttccagtgc
      541 ggcatttaat atctctccat ctgtgcggct ctgtttagcg gtcactttag tgcagctctg
      601 ggatgccaag cggcggcttg atccccgtta tgtcaaaatg cttgttgctg cttaattttg
      661 atatctaatt aagtggaaaa gtacagtcca cactgtaatc catggcatct taaccagctg
      721 cttgggtata tttagaatta atctccacta tggaatcatc ctaatgtatg caat
//
LOCUS       KCOD01001867             282 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 208142pyr ultra-conserved element
            locus uce-3101, sequence.
ACCESSION   KCOD01001867
VERSION     KCOD01001867.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 282)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 282)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..282
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="208142pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>282
                     /note="ultra-conserved element locus uce-3101"
BASE COUNT           99 a           53 c           46 g           84 t
ORIGIN      
        1 tcccagaaca caaatgaaaa aattgtggca tttcttagct gtagaaaatg caccagggat
       61 aacctcccct gtgcttgagt ctatagaatt agtattaatg ccatgacaca cgcaacagac
      121 atatggaagt gttatttgtt tctcatttac caaacagaaa agaatatgga aatagtttca
      181 gtccatttgt ttgatgagct tcctaagcca gtaataaaca aatcaataca attagttttg
      241 gctcatcatc attagaaacc ttcactactg ggatacaatt ta
//
LOCUS       KCOD01001868             673 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 208253pyr ultra-conserved element
            locus uce-693, sequence.
ACCESSION   KCOD01001868
VERSION     KCOD01001868.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 673)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 673)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..673
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="208253pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>673
                     /note="ultra-conserved element locus uce-693"
BASE COUNT          208 a          122 c          115 g          228 t
ORIGIN      
        1 cacagtcaca catggcttta gtttactctg gaaaactgga acttgctacc actttttcct
       61 tgtcctgttc aggtagttca ttattttgtt gacagttcgg ttccattaat ctggtatttt
      121 tgggaaaatt gcttgcagac cttacatttc tctactaaag gtgatcaaat aggcattgaa
      181 tccctcatgt aaatgatgtc ttaaagttaa aataaaatct attttccaga aagtaactgt
      241 aaaactattt tatgcaagat ttcatgtggg ataccttaat ggttgaataa taaattttac
      301 ctcataaaaa tgaaattcaa taatacagta gctttctcag cgcagtagca tctggttgaa
      361 tctcatgaga gccaatattt tccaactcat taggatcatg tcgttctgta tgtcgtcaac
      421 attgacttag ccaagctacc tttacttaca taaccgccaa actattaaat aggtctcttg
      481 tggagtgaag tcaaatattc ctcttatttt gcttttgcct tggaagaaga gaagaaaatg
      541 tacatactgt aacatttaaa catctggtct aaaccacatc agggtaacag tgaggaaagt
      601 aacaggattc agtattcttc ccaggtgtac atatattgtg gaactgctgc atagttcttt
      661 taaccactta gga
//
LOCUS       KCOD01001869             538 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 208363pyr ultra-conserved element
            locus uce-6955, sequence.
ACCESSION   KCOD01001869
VERSION     KCOD01001869.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 538)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 538)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..538
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="208363pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>538
                     /note="ultra-conserved element locus uce-6955"
BASE COUNT          174 a           80 c          105 g          179 t
ORIGIN      
        1 ttgtaatcga agttcaaaag cctcctgagg cgtgaacact gaaaatggaa atttggcaaa
       61 atgtgataat ctagtatttg tgttcatttt tcttgagcac cgatgaataa catgttcaaa
      121 ctcatgacct tgctaaactc tttcctttct tttctaaaag ttggtcagga aagggctttg
      181 ttatatcagt gggtttgttc catgccacaa atttcatgta cgaggtcact tggaatataa
      241 tgtgtagtga aagaatctca ttaggctaaa atgaatgtaa aatgtgtcaa tttgatccaa
      301 atgagaactg tagtaaaacc atgtttgatg ttcatgtgca ataaatcttt aacatttgtc
      361 tgtaaagtat tagagaaccc agagggaaat ctctatttgt gatagctgca catttccaat
      421 gattttttct ataatccttt gttgacattt agcatatggc aacagaaagg aagatcctaa
      481 aatgagaatt gttgcttatt attcgaaggt aaacaagatg ggcaccttga atataagg
//
LOCUS       KCOD01001870             393 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 208467pyr ultra-conserved element
            locus uce-7190, sequence.
ACCESSION   KCOD01001870
VERSION     KCOD01001870.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 393)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 393)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..393
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="208467pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>393
                     /note="ultra-conserved element locus uce-7190"
BASE COUNT          147 a           55 c           89 g          102 t
ORIGIN      
        1 agaaaatgaa ttttatgaaa ttgggaggga gtttgcagca aacagtggat tatattggtg
       61 ttatatagct atctcatcaa aaggtagcaa atgcacaaga ccttttgcgc ttttcaattt
      121 gaaagaaaat tatttcatta gaaaaaaaag aaccatcact ctggatgttg gagaatgcca
      181 gagcctgatg aaaccagctg aagagacaaa ctgagtgtac ggatgcagat tagccttcag
      241 aagatgaggg tgtaaaaggg atttaatggt aggatggatt atagaaatcc ttgtaacaat
      301 gttaaataat tatagttcca gccgagatca aagcagtgct gattgaaccc cctcaagctg
      361 ttaacacgga gtatcttgaa ggaaaaaaaa aaa
//
LOCUS       KCOD01001871             321 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 208567pyr ultra-conserved element
            locus uce-4747, sequence.
ACCESSION   KCOD01001871
VERSION     KCOD01001871.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 321)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 321)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..321
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="208567pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>321
                     /note="ultra-conserved element locus uce-4747"
BASE COUNT           40 a           91 c          117 g           73 t
ORIGIN      
        1 aagggccggg ctgggttttg ctgccctttc cccaggtccc cggactcaga gccggtgccg
       61 tgagtcgtgg ctgtatccgc cgggggagcc gcggttccgg tggggtttat acgagtcctg
      121 gtaggggtcg agtattcctc ttccacgagg ggatagtggt ctcggctgtg ctgggaactg
      181 gaagacaagc ggttcctgct cttccgagcc ctctcgttgt ggtaattctc gtcggaggtc
      241 atgaggctgc gccgctcgat gggagagttc tccgcggagt ggccgccgtg cctcccgcgc
      301 tggctctgcg ggggccaaac a
//
LOCUS       KCOD01001872             597 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 208667pyr ultra-conserved element
            locus uce-7611, sequence.
ACCESSION   KCOD01001872
VERSION     KCOD01001872.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 597)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 597)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..597
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="208667pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>597
                     /note="ultra-conserved element locus uce-7611"
BASE COUNT          178 a          112 c          105 g          202 t
ORIGIN      
        1 ctctcttaca cttggataat ataagttgaa cactgtcaat ctgtctgaat agttttgagt
       61 tcaggagttc aaactgaaaa tgcttcagaa aatgtagttt tttggctcat taaaacccaa
      121 aacattttgg aactcggtag ctgactgaag gaaagggtat gaggtgtctg ctatttaagg
      181 catcatccag tggctgccat gctaaataat gtgtttaaag cagaatttcc atcagcagca
      241 agcattatgg tgctaatttc ttacatcatt gttcttttca ttaattaaca tttctcaacc
      301 gttagtgcaa ttattgcagt gcctccgtac tgtatgtctc ttttcatgat taataaggag
      361 tcattatatt tccctttcct gaagcagtca attaacacgg aatactttcc attaattact
      421 gaatgtttaa aaccagcatg ctgtacctgg agagcaatct gctctaggaa cctgtgacac
      481 caattgcttt taaaagttct ctttaaattt tattccaaaa acacaagcaa tttagctggc
      541 tgtattaatt tgcctccgaa gcagggctgt gaatgagaaa catcttttaa tctcatg
//
LOCUS       KCOD01001873             554 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 208779pyr ultra-conserved element
            locus uce-6200, sequence.
ACCESSION   KCOD01001873
VERSION     KCOD01001873.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 554)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 554)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..554
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="208779pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>554
                     /note="ultra-conserved element locus uce-6200"
BASE COUNT          151 a          106 c          117 g          180 t
ORIGIN      
        1 tgtttgtttt agagtaggtt gttttcttct tggcacacca tatatgcacc agcaagtgct
       61 cgcagtttca gctgcattta aggaaatatt gttgtaaggc ttttatgtgc tgtacttcaa
      121 tcagctagtg ccagcagtat cccaatagaa agaccctcaa cagaccattt tcagcatttt
      181 gctgcaatta aactcctctg gttttagccc tcaggcaatt tagtaccttt ttacatatgc
      241 acattatgaa cttttgacca gggcctggta gtcatatatt agatagcagc ttttgaaagc
      301 agacttaaca agttcctcag agtattacag ccagagtcag ttgtggaaaa ggtaatttaa
      361 ccaacttgca gtgaggccat tcagaatcgt actgatgatc ctaaatatgt cttttccttg
      421 tttcctctgg aagctggtag caagagctct caaagaatgt gattgatctt ttattcagta
      481 gctaacgagg gctgtgattc tattagtgct ctacaaggca agggaacagt gatttaatga
      541 agtgtctggt gagc
//
LOCUS       KCOD01001874             752 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 208889pyr ultra-conserved element
            locus uce-3154, sequence.
ACCESSION   KCOD01001874
VERSION     KCOD01001874.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 752)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 752)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..752
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="208889pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>752
                     /note="ultra-conserved element locus uce-3154"
BASE COUNT          205 a          176 c          134 g          237 t
ORIGIN      
        1 aaaagataat attctattac tggtatgtgc aacttaaaag ggcactactg tctttggagg
       61 taacgagata ttcttttaaa tgaatgcatt atgcataagt aacctatttt agtttgaata
      121 aattggcttc taatttggca ataccaaatc tagaattagt atatttttca tttctttacg
      181 catagctttt aagagccttc tgaaagtgaa aacagtaaat atgcactaaa taaggaacag
      241 cttgctctgg agtctgaatt ctctagccta atgtcgatcc actgagttgc cccatttctc
      301 tctgctcagc tggaccacgg gtttaccatc aagagatcag ggtctttgga ctactaccaa
      361 caaccaggaa tgtattggat aaggtatgag atggtgcagc gccaacagtc agtgtttcca
      421 tggcaacgtg ctggcagtct ccattaacca gttccttcag tggataaaca tgctttttga
      481 tttgttatct ggtccatatg ctgctttatc agtttcgttt taatcttgat tgagatgcca
      541 caccccctca ttccctttct tcacccatcc ctcacaccca cattgccagc tttctcttca
      601 tcgcacatgc tcagtatcaa tctcccctat agttaaaagg acagtgtata tagacagata
      661 tgctgaagta tgcaccctcc ccctccctac tgcttgttaa ggcatctact tcccctgtgc
      721 tcctgtttca aaacacacgg agcagcaaca gg
//
LOCUS       KCOD01001875             663 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 208999pyr ultra-conserved element
            locus uce-3238, sequence.
ACCESSION   KCOD01001875
VERSION     KCOD01001875.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 663)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 663)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="208999pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>663
                     /note="ultra-conserved element locus uce-3238"
BASE COUNT          212 a          109 c          118 g          224 t
ORIGIN      
        1 aaaaattaaa tatactacca acttttaaca tgtctaattt ggacaataag ctgaccattt
       61 cttgtgtatg catcagttca ttaatacagg aaaatatgct atcaaacaga cgatcaaatt
      121 tcatgtaaaa taagctccag cattaaaact gttcctggta ttttatgtgt aactctgtgg
      181 gtagatatat ttcttgctac tagagcaaaa ctgatttgtg tgatggttcc ccatcatgaa
      241 atcacttgga aggttgtgag ataaaatgtc gcttaggata atgtaattgg ccttaaggta
      301 caggagttga attattttca gtgatttata atctggaaat taaagactca ctcattttct
      361 aatttaattc catcttcaat ggaaaaatgt tcactctgaa ctaaattggc gagtaatgtt
      421 gctaattcaa atgcagatgc aatttcgatt ctggtagcag tttgctgtga ttgacgagtc
      481 cccaatggat cataatgatt cttatctccc aatctcacaa attctccagc agttgtgata
      541 ataacttcgg ctaaggagaa aaggcaaaaa ataaattctc tgctgcactg tcaattcagg
      601 ctttgctttt ttcctgacat ggaatggggt ttatttcaaa tctattgcat gttggagaca
      661 aat
//
LOCUS       KCOD01001876             718 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 209108pyr ultra-conserved element
            locus uce-1983, sequence.
ACCESSION   KCOD01001876
VERSION     KCOD01001876.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 718)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="209108pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>718
                     /note="ultra-conserved element locus uce-1983"
BASE COUNT          190 a          133 c          160 g          235 t
ORIGIN      
        1 ttactgttgt tcagtgctga agagttgcta ttttgagtaa agtaacaggt cttagtgatt
       61 tgtggttcct tctaatgttc aggttcagat gtgcaggtgt tgcttttgtc agatgaatgc
      121 tgcctgattt ctactgctag gtaattcacc tgcatcaaga ttaagaaacc actttttatt
      181 aaataagctt agaaacaaga taaatgtatt ttgcttttgt gtatgaatat ctgtttttct
      241 gatgagcgtt taaaatgttt cctagtacaa ttgggaggaa tgcattatct ctcatgtaga
      301 agcagtacag tgctgaaata gtcctcctta attttggtca gaatgaacaa aagtgtctgt
      361 gtttattcct gcctaatgca tcacaaatct gctgacatac taaccttgga gtcttggctg
      421 gcggtaatca ggcctgtgca ccggcaggaa agatgtacct aatgcactcc atcagtgcag
      481 tttgcatatg gaagttctca caggggagct gccctgtgcc agctgagggt tacctgccca
      541 ctgcagttat tgtatgtaat tatcgaacca atctgttcag cccagcaggg tttagatggt
      601 aatcatgaag caacactttg gaaaggaaag atgtaatgca ctctcccctt ctttcgtgag
      661 ctgtgtgaag ttgtagccac ttttaaagct gtgttagtaa agctctagtc tcacacaa
//
LOCUS       KCOD01001877             401 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 209217pyr ultra-conserved element
            locus uce-2176, sequence.
ACCESSION   KCOD01001877
VERSION     KCOD01001877.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 401)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 401)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..401
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="209217pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>401
                     /note="ultra-conserved element locus uce-2176"
BASE COUNT          106 a           86 c           83 g          126 t
ORIGIN      
        1 agaaaatatg ggtagtataa cactctgctg tttggcaacc agaggggcct gtgtagtttc
       61 tacccttcag tgcatcagag taagattcca gcaaaaccac atgttaaaag ggagggctgg
      121 gtgttcagct gaatgaactt actgttacct tctaacataa gtcttctttt tcctgatact
      181 gtctgaattt gaaacatcta atttaataca ttgaagggcc ccgtcttcct tttatttcct
      241 gtctgtactg gagcagtcgc ctgtttcaat tatgactttc tccagctcct acatttttcg
      301 tgctccagct ggctcaaagt gcacttcctt ggaaggtaaa atgcactaac tgtgctgatc
      361 agagactgat agctggaaag ccacaatatt taatagctga g
//
LOCUS       KCOD01001878             748 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 209328pyr ultra-conserved element
            locus uce-1636, sequence.
ACCESSION   KCOD01001878
VERSION     KCOD01001878.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 748)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 748)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..748
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="209328pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>748
                     /note="ultra-conserved element locus uce-1636"
BASE COUNT          229 a          164 c          143 g          212 t
ORIGIN      
        1 aaatgcaacc actttcgcca ataaacacta gatcatttaa gggaagtccc tcaagagtta
       61 ctgcttcctg attgatgtaa tcttaaccac ggcctgtggt ccaaaaattg ccaatcaatc
      121 atgtatacat tacagaaaaa attgggttaa tgtgtctgca tgctggcgcg ttggtaacac
      181 tccactccat gctggcacaa gatcgccttt gaagaaaatc accctgttgg tgtatcatgc
      241 gtttgttttc acctcaccat tttgttatga tgtataggca acgagcctca tgtggccttc
      301 ctaatctgaa aacgagccaa gagaaagaac gtgttccgaa gtgttgaaag aaaggcctat
      361 tctctgccta gggaactgca gctaatacag gaaatgaaca caagttttct gtaagccgtc
      421 cagcttctga atcagctgtt ccttgctgaa aaccttcacc tccaaatcta aatactgaat
      481 gccaaatatt aaagttatga aaaatgcaag tgttttcctc ctctttcccg tgttccttca
      541 aagctgtgta aatctaactt gaattgtaag cggctttatt ttaacaagtg tgagttatca
      601 gagttcgcat atcaaattaa acccaatgaa ttctggactt gttttaaatt tcaagccaga
      661 ggccctaact ccctgcattg cacttggcag ccagccagac ttagtaataa agtgctaagc
      721 agaagacagg aaatactaga gaagtcga
//
LOCUS       KCOD01001879             681 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 209438pyr ultra-conserved element
            locus uce-1120, sequence.
ACCESSION   KCOD01001879
VERSION     KCOD01001879.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 681)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 681)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..681
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="209438pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>681
                     /note="ultra-conserved element locus uce-1120"
BASE COUNT          206 a          113 c          145 g          217 t
ORIGIN      
        1 tgggtgcata caagtctctt gacaaaaggt ttttaggtgc aactgatgaa attttatctt
       61 aaacatatta aatcattgaa tcacttaagg agacgaattt caactggttt agcatttgct
      121 taaggcaaca agcaattgta aacatgaggt ctagttaatt gattgtctta atatttacta
      181 catgcagtca tataggatgc taatttttaa tacttcttta gctataagaa tgcatgtttg
      241 ctttctcttg attcacacag aacagatgga tgcttgactg cctgctaatc cacagctgga
      301 atggtttcag cagtttccac gttgctgggt tagagtggct tttctagtgg actgagaggg
      361 cagcaagaga gggatatcat tattcatcag tatcccagtg ggatcgctgc cagcagagat
      421 taattttttc tgttatgctt gtaaaacaag ctcaggtgga gtctctaatc ctcagggcac
      481 gggtggcaga tcaaggaaga tgctacaaag ctagttaatt ttcagattct aggggaaaca
      541 gaagctctgt tagatgtata aatacatgat tgtaaattta agtagctcaa atccaaatgg
      601 gatcttccta gacatctggt cctgaaaatc tctgttttca aaggaaattc ttaatttatg
      661 ccagaggcga aatatctgca a
//
LOCUS       KCOD01001880             963 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 209550pyr ultra-conserved element
            locus uce-1719, sequence.
ACCESSION   KCOD01001880
VERSION     KCOD01001880.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 963)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 963)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..963
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="209550pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>963
                     /note="ultra-conserved element locus uce-1719"
BASE COUNT          319 a          177 c          159 g          308 t
ORIGIN      
        1 ttccaaagca tttcattgaa agatatttta acctatatat ttgccaacca gaaaaaaaat
       61 gaaaagccat aaaacagtaa aacttctggc acagcaatag cgtgtagcta caatacactt
      121 tatggacaca ttaaaaatta caaaagctgc agaaatactc aatctgtatg gatgcaaact
      181 actatgttta caatgttacg gtaacttatt ctactagctg gcaataataa gcataacatg
      241 tttgtaggca tgcaatcatg aactgataaa atagaattta ttattaacta aagaaaagca
      301 tgtaaaacct aggatgagca cttagccacc tcagctcatc tgaatatatt caaggttggg
      361 tgaaactcat tattcaggac tcgcagcctt gataactttg attttcatcc atccatagca
      421 tggccaaaag gtaccattta atgaagtacc attcagagag taaatggggt catataatag
      481 acagtgcggt tgcaccttgt gttcatgtac tgatagctgt taagggtgca gtgatgaacc
      541 aacagagctc atttctcctt ggtaataaat tcatgctatt aatatttatc aaatgtgtgg
      601 gccgtctcaa ctgagccact gcacatgaga ccataaatct ctactatcat atcaattttg
      661 aagcttcttt tgtacagtgt ataaatttta gtaatattga ccactcttct ttcaaaccaa
      721 tttgaggcca gcagtgtagc tcaccacttc agatatctct agttccaaag ggaactttaa
      781 actgtggttt cattttaaat cgctcatcta agattctgta ttaattgccc accatcaaac
      841 gcaattagca attctttcat gtgtggttta tgtaatgtaa tacttcaatt acattattca
      901 ttcaggttct gttttggatt ataggctgaa aattctttat tagtgtagat gtaaccatgc
      961 tgc
//
LOCUS       KCOD01001881             666 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 209657pyr ultra-conserved element
            locus uce-7291, sequence.
ACCESSION   KCOD01001881
VERSION     KCOD01001881.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 666)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 666)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..666
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="209657pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>666
                     /note="ultra-conserved element locus uce-7291"
BASE COUNT          184 a          124 c          137 g          221 t
ORIGIN      
        1 aagttctaga tttggaaact ggtattctgt tcgcagccag tgctgcaaac actaagctga
       61 agtggactgc agttgtgagt agcagcttgt gtaagaagga cacagctctg tgaaggtggt
      121 ttgtaaaagc ttgttcaaag acaacttcca atcatacaaa gaagtacatc ataactcttg
      181 gaggctgtca tgaccatgaa ttcagttaat acatctgttt ttgtgtttat ttcccatatc
      241 cattaacatg ttttgttcct ttgcgattta cagcgcagaa ctctgccaat gcaggttttg
      301 caaactttga tgcatttgga cagtctagtg gctcgagtaa ttttggaggt ttccccacag
      361 caagtcagtc tccttttcag ccccaaaata caggtagaac tcctagcact tttgattaat
      421 acttaattga aataatcctt acctttatgt tggaaggtat tgaagttgag tttttcttgc
      481 gtctgcctgc tttaatgaga tcaagccatc tgaagctctg gggaaactca aaatgaattc
      541 cttgtgtttg gtgttgaccc taatgctgct cagaagtctg atttatggca ctgtgtttgt
      601 tagctctaca cctgaaataa ctatgaaaag aatgaactct actgctttta ataagtattg
      661 aattga
//
LOCUS       KCOD01001882             774 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 209770pyr ultra-conserved element
            locus uce-2338, sequence.
ACCESSION   KCOD01001882
VERSION     KCOD01001882.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 774)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 774)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..774
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="209770pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>774
                     /note="ultra-conserved element locus uce-2338"
BASE COUNT          230 a          138 c          154 g          252 t
ORIGIN      
        1 atgtgtaatc ttaaaaactg catcacccaa acttggttca taactgtcaa gggccaacaa
       61 aaaaatgagt aaccattttc tcaactgtaa ctactcaact gtgaggacag aagtcctaaa
      121 atccgaatat taacaaccac acgtacgtat taacaggtat attaactttc cagatgcatc
      181 cattcaaata agttttgtaa acatttacct gtatccaagc gctttacagg ggactcatca
      241 tcaacctcag aatctccaca tgcactcctt gatcttttcc ttgggtgcag aagtgtctcc
      301 aaccttggaa ggactacaga caaaaaggtt ttggtcccta gctgtggaga agttggctgg
      361 gtttcagtgt tctttgcaga cttttggggg cttatacttt tcgatttgca gaagagaatg
      421 gatgtacgtc tgtttacatc agttgatgac tcagctacag cagaaacagt cgactcattg
      481 agattactgt caagtaagtg ttctggagtg tgtccattta tttctttctg aatggaagtg
      541 ctatataatt cattatcaaa ttttactctt ttgtaaagct tactctgctc tggattgagt
      601 tctactggtt tgagggttgg tggttctgaa ttagtctcca agtttgaagg aagaggtaat
      661 gcatctgatg gttcaagttt agggggagat ttatctcctg aaaaaattat aaatagagtg
      721 tgatttttga aaacctgtag ttataaagtc tattataaaa ctcactataa atgt
//
LOCUS       KCOD01001883             769 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 209881pyr ultra-conserved element
            locus uce-5915, sequence.
ACCESSION   KCOD01001883
VERSION     KCOD01001883.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 769)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 769)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..769
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="209881pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>769
                     /note="ultra-conserved element locus uce-5915"
BASE COUNT          214 a          175 c          160 g          220 t
ORIGIN      
        1 tgtttctctc ccaccctgct tatgtgtcat tttcgttctt attttaacct ccaatgaaat
       61 aatcagacta cacaaagacc agtaacacct ccatgtccct ctctggcagg agattgttaa
      121 aacatcccct gaaagatcta gtgacgtgat gttccctgac tgtccaaacg taacaccatg
      181 ccggcactgc atccttgtgc tggagaaaaa tacctcggtg cttgcaggca ggaggctctg
      241 ggtgaccgtt gagtgcactc ggattttaca aactgtcata tggcgagata gtggtgggtt
      301 tcaatgccgg cacctattca gtcaacgcag atgaactaga atcaccattt cagttatatc
      361 atagctcggg gcgagaacat gtcaccctct ttatttccag ctcggaacaa gctgcttagg
      421 cagatgctaa ctgtggtcct ccctgccatg ttctgtagag tggcctttgt ctgggttaat
      481 tgagccccca ctccatttaa taggctgttg aagtcttatt gaaacagagc tagtgccgca
      541 ggttaaatac attgcagtgc tcttgttaat cccctcatta acggagctgt aaagcttgtt
      601 gagagctgtg agtttgcata tattatcaga gagttcttca ctcaagtgct atcaataaaa
      661 tgacaaagcc agtttgcaaa tagtgaaatc aacagtgaca caaagctaga taccttaaaa
      721 aaataaacac gttaataact gataaatcta attttcacac ttgggggat
//
LOCUS       KCOD01001884             771 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 209989pyr ultra-conserved element
            locus uce-7246, sequence.
ACCESSION   KCOD01001884
VERSION     KCOD01001884.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 771)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 771)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..771
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="209989pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>771
                     /note="ultra-conserved element locus uce-7246"
BASE COUNT          220 a          152 c          176 g          223 t
ORIGIN      
        1 gagctaaaga attatgtaga gacataatgc tgtgagcagg gttcttgtgc agacggtggc
       61 ttgctctttg catgactttc acctcctctg agaggcagct ccagttaatg ttgatataaa
      121 actgcctgtt aattggagta catggagata atggtaggta taatctctaa gtaaactctt
      181 aaaagctctg gaaaaagggt ataaaacctg agtttgcact ctttgaagat agactcatca
      241 gtgtgcggag cagacttctg ccttgaggcc atttatagtg ccgaagcttg tgaagctaaa
      301 acagtttgat gtgtaattgc aggaggaaat ggaaaacctg ctgagcatgg caggatatag
      361 tgccttatca ccctttatgt gcatccagtg cttgctgaaa ttgccagcgg atccgcaaca
      421 tcgacagaac ggtgacattt ttcatgggcc gccgtgttct gaatcaacac tgcaacagcg
      481 cgattagagt aggtaaagta gggggaacaa tcaaagagtt gcatgtgaca gatcaggttt
      541 tagtcattcc cggctcctta ttgcctgctg tcgtgtgtga tatgcaaaac agcttctcca
      601 gacgcattac accttcacat tacctgaaaa ttgaatttta tttggtggcc tgcatataat
      661 ttatagcact cttccaatgc acttcagttc tcatttagct aaaagtgtgt tctttatttc
      721 ctactggcag ggaaacagaa ataaaactga atattcagca ccacttacag t
//
LOCUS       KCOD01001885             493 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 210090pyr ultra-conserved element
            locus uce-5490, sequence.
ACCESSION   KCOD01001885
VERSION     KCOD01001885.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 493)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 493)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..493
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="210090pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>493
                     /note="ultra-conserved element locus uce-5490"
BASE COUNT          135 a          113 c          119 g          126 t
ORIGIN      
        1 ctctccttaa atgagagcat tgcaaagatt tgcatacaaa cccacttgag tatttgtgct
       61 gcagcacatc tggcaattat caattgccac aggcttgcag ggagcaattc cagccttcta
      121 ccagctacct tgaacatact tcatgtttaa tttccctctg ttgccagagg cgctgtgttg
      181 ttatgacagc tgatctgccg tggaatagct gtaaaggaaa atcaaccgct ccagcgattc
      241 tcggcgcaat ttatcggtgc tcgtgtctgg cggctgctgc cgcctgtcgg ggtaatgaca
      301 catgatgggt gattaaagtg caagtcccta aatcaaagct gtgccagcag tttgaagagg
      361 cagaaaacag cactcattgt gggaggacct cattagtttt gctaactaga gggagcacag
      421 ggatccccaa gattcacaaa caaacaatca gaatcatggg acagtttggg ttggaatgga
      481 ccctaaagat cat
//
LOCUS       KCOD01001886             781 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 210185pyr ultra-conserved element
            locus uce-818, sequence.
ACCESSION   KCOD01001886
VERSION     KCOD01001886.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 781)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 781)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..781
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="210185pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>781
                     /note="ultra-conserved element locus uce-818"
BASE COUNT          223 a          177 c          147 g          234 t
ORIGIN      
        1 aaaaatagaa atattattat tgctctttaa gtatccattc tgtttcattt tctcagcaaa
       61 ataataaccc ttggaccttg taggcagcca aatatcaggc cttaaccatc tgtcaactgg
      121 cttagattca gcaagcatac tcccgtagtt ttagttctaa ttgtgtttaa tgctgcacta
      181 attatttcaa tggggaataa ttttgtacag tcaaagttga ctcattttat aaactggaag
      241 ctcctcagct ataaattggc aggtctcatc cttcatttct cctaagcgtt gtgccaaagg
      301 ggaataagta tatggttgct ctgtgaccaa atgtcatgtg ctgggcagaa acattgatcc
      361 tggctattaa tcactctgca agccctccca gtaatcaaag ggcacagctg caatgatata
      421 tgaccagtgt cagagcagaa agccctttac aagactgcat gcctaccagc tgatggccag
      481 tatgtagtac agcatgcaca ctagccagcc caaaatgccc aggccaatta atcatcaccc
      541 ctaactgttc atactatcat taaacacctt tattgaggtg aggattctta ccccctaatt
      601 acttaggtct ggaagctagg aaccttctca cctggataca aaaagcggcc tattacctgc
      661 tctgggccct ttcattctct cctcactaag agtttgctga cccagcagtg aacctgtgac
      721 taggagaaaa ttggatactg ttgtgactga tcttggtgtg gttcatatca atttgttgaa
      781 a
//
LOCUS       KCOD01001887             791 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 210296pyr ultra-conserved element
            locus uce-762, sequence.
ACCESSION   KCOD01001887
VERSION     KCOD01001887.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 791)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 791)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..791
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="210296pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>791
                     /note="ultra-conserved element locus uce-762"
BASE COUNT          244 a          160 c          124 g          263 t
ORIGIN      
        1 ggccacagct aaactacaaa tagtgttagt gctgtgtcta acttaataag ttatttgaaa
       61 catcccatgc actgatgtcc aaacaaacaa acttgcctcc ccctaagcaa attgcactcc
      121 tgagatagct ctcctaacat caagaatcac tagtatttca caaataaagg agattaccat
      181 gtgaaaaatt atcttttaaa atggagttta atttgcatat aaggaacagt agatttatga
      241 tgagcaacac agcgcagcac tgcatctgcc tagtatcagt cgtaatttag attgtttgtg
      301 accgatctta aattctaaag catggagaag atgaagtgct ctgttgctgt gttattgtca
      361 ggagtctaag acttaccaga gatttattag taatcttatc acaaacatgt ctcaagtttt
      421 tgcttttaat atgtgccaag ctcctctgag gaattttcct cactgcaatt atatttctca
      481 atgcatgcat tctgaagctt agttgatttc cttcccaaaa taaagcgacc tatcattaca
      541 ctacagtagc tctgctacat ttttcctctg ctacttaata atcaatgtat tcatcattaa
      601 aatctgagcc ccgaagcaat ggtttttagc atattctaat gactagcgac ttgcaaatta
      661 cattgacctt tcatgtacat tctgtaagca ccttgttcta atgtgtactg tatttatagt
      721 ttgccaatac aaactagcca aagattggat aattactgta atctattagc tcgattgctt
      781 tccctgctca t
//
LOCUS       KCOD01001888             785 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 210405pyr ultra-conserved element
            locus uce-5805, sequence.
ACCESSION   KCOD01001888
VERSION     KCOD01001888.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 785)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 785)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..785
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="210405pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>785
                     /note="ultra-conserved element locus uce-5805"
BASE COUNT          230 a          132 c          168 g          255 t
ORIGIN      
        1 caaagtatta catgccatat gttatgcaat actttggcac cagggatgag ttaagggtag
       61 cccttagcac tgaatgccct tggttttgct ggtttatatc acaactttaa ccttgctttt
      121 ttttgggtgt taatttaatt tggctgctct gtatgtgaga catcttgcct gagtgaattt
      181 aattgcacca ttgagtaaaa ctaaagccat gaacactgat gcactaaaat tctagcagag
      241 gtataaggtt tagttttata tggcttcttg tttggagtta ttaactatat ggaggaataa
      301 attttttaaa acattacaaa acccacaatg taaagttgcc atgagccagc caaaaataat
      361 acatatggca ttcaggagtg cagttgctaa ttggctgctg cctgagaaaa tggtacactt
      421 ggcttctact taacactgtg ggtttggcag aaagccagat ttggggtgag gttgtgaatg
      481 aagctgcatg tggttaggga ggagttcaaa tgattcatgt cttggaagtt gtagtaagca
      541 gtgcagtatg tacttgggta agcagctgga ggaaactcct cacccatgtc cgcccccaca
      601 aatcttttcc tacacctcca cttgtgtctc cgtagtccat atctcagttt ttaaatcatt
      661 tactaaattg ggccatttac agatttaatt catgtttcaa catttctttt cttttagatg
      721 gaaaatggag aggaagtaga aatagaggaa ttctacgtaa agtacaaaaa cttgtaagta
      781 aagtt
//
LOCUS       KCOD01001889             763 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 210516pyr ultra-conserved element
            locus uce-7354, sequence.
ACCESSION   KCOD01001889
VERSION     KCOD01001889.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 763)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 763)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..763
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="210516pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>763
                     /note="ultra-conserved element locus uce-7354"
BASE COUNT          176 a          166 c          197 g          224 t
ORIGIN      
        1 tttgtgtttg ggcatgtagc agacagtctg catcacctga gtaccaggaa ttcatctgtt
       61 ttccccctaa ttttgctggc actcgcagac aaggcatttg gggtatgtca gtaccagccc
      121 atctctagtt atcaacagaa gtttgtgagg caaaatagct attcttatct gtccagcagc
      181 tgcttcaaag ctctttctat gttcattctg tgcccaactc tagtcactcc aaggtctatc
      241 agatcttcct tctgtagatt tggtaaatgt gtgccatcta tttcattgtc cataaatgtt
      301 tctttatgtt cacctaagtt tagactttcc aaccaatctg ccacatctgg tttagtccac
      361 aggtggacag gcttagttgt aaaaggctta tttgagattg gctgttgtaa tattgaggga
      421 gaaggagacc tgctgcgccc tgtggtcaag ccaaataagt ccccagaagg gggctggctg
      481 ggtaggctaa atacatcgga cagagttgga gaaggagatg aggctgaagc agaagcagtc
      541 agaggagcag gcatgatgtc tttattgatc tctgttggtg aaaccacagg gctgggagcg
      601 tgccttgctc ctgaggtcct gctgtcatag tctggggacc tgctctgcag tgtgatcggc
      661 tggctggctc cgggtcggac agtgaaagtg attgttgtac ttcgtgtacc tgagacagta
      721 ctcatgactt ccgtgctcct gcaattgcac aggcacagtt aga
//
LOCUS       KCOD01001890             737 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 210626pyr ultra-conserved element
            locus uce-3890, sequence.
ACCESSION   KCOD01001890
VERSION     KCOD01001890.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 737)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 737)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..737
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="210626pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>737
                     /note="ultra-conserved element locus uce-3890"
BASE COUNT          220 a          129 c          161 g          227 t
ORIGIN      
        1 ggcattcata gcctgcaatg aattaatatt tgggcttaac agctgttccc tgaacagaac
       61 aatatttaca gttttcatac aaatcagatt tttaagttga ttttccttta cagaccttca
      121 gcatactgtg tactaaattt cttaaaagtt ctgtgttttt tgatgagtaa tggttaaaga
      181 aaatatcaga ctctgtgata accaaggatg tgctcaagtg gcatgaatac ttcagttcca
      241 gatgggtcag ctttaggggt caagttgtga agagaaagcc atcacacaca cttcatcaac
      301 accgtggaat gagagaccag tgcatttact gagcaatgga tttccagtga gcgtataaac
      361 taattggtgg atgaacatgc cccaggagca atgattttaa ggtcatagca ggctcagtga
      421 attgtgctga cttacactgt gtctcagtga tagctgatct taccaatgag cagtttagag
      481 gcattcaagc ctgaactctt ttccatgtgc cttgaatggc atgtcagcgg tcactgtttc
      541 tgacatcctt tatatttgtc cagtcagctc taaatcttta ggttgggctt cagcgtactc
      601 aggaaagaaa ggagagaagt gattattttc agtcattgag ttctgaagat cttagtgtta
      661 attatgccaa acacggttcg ttcatcaaca aactagaaat gttaaagaga gaagagagag
      721 ggaactgata tttttgg
//
LOCUS       KCOD01001891             777 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 210736pyr ultra-conserved element
            locus uce-624, sequence.
ACCESSION   KCOD01001891
VERSION     KCOD01001891.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 777)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 777)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..777
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="210736pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>777
                     /note="ultra-conserved element locus uce-624"
BASE COUNT          226 a          164 c          160 g          227 t
ORIGIN      
        1 gcctatatgg gtcaaggctg ctcgggttca ctgctttgtg tattacagtt taaagaatgc
       61 tctaaattca aggtttttaa tctacggggg aaacttccta taaactcaga ttaacagctg
      121 ctaatgcact gaagaaagaa aaaccttcct cctactataa aaacaaaata gtgtggcctc
      181 tgtttctttt ctgataagag tcttaaatac caaacattta actgcataat aacattccct
      241 ggcagccagc agcctgctta gcagatacat aaagcaggta aaaggggaaa aagttaattt
      301 cttggctgaa tgattccatc ggtagctata gggcaaacta gaaagtcttt tagtaaagta
      361 gcagttgatt cttctatcaa tctgcagcac acacactctt ccaaggaatg cattaaatat
      421 gaaaatcata tcccgttatc atctgttccc agctttcagc ccagttttcc ttaatgaatg
      481 ctgtagccta agggacgcgc gtgctgctgg ctcctcggaa taatggagtg atgctcccgt
      541 cctgcctatt ccggcgccgg ctggctgagg ggcttccaca cacagtcaca agtgactact
      601 cttgccagca tgctccaagt tattacaaga tgtttttaga catttcatct aaaagagctt
      661 tgctgcgttt agtaaaacag ctctggtctt gaactgtatc atttatatgg agataggagg
      721 agggattagg agcctgcatt actgcagata tatggcagca gatatttaag tattcct
//
LOCUS       KCOD01001892             595 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 210847pyr ultra-conserved element
            locus uce-3692, sequence.
ACCESSION   KCOD01001892
VERSION     KCOD01001892.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 595)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 595)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..595
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="210847pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>595
                     /note="ultra-conserved element locus uce-3692"
BASE COUNT          194 a          118 c           84 g          199 t
ORIGIN      
        1 aaaaacatgg tatactctac attcatttat taaatacctt atgtttccaa acagagcttt
       61 ccatatttgc tgcaaaactc agtagcttca tgctttacac aactgagcaa agatgacagc
      121 actgaaatga gctattacta tttccatcag gaagatatgg ggaactagtc tgtgtctttg
      181 aggcatatat attcgtcaaa tggaaaagct ttaaaaagca gcactatcta agatatcagc
      241 atcctgtctc ccttggagac agctaaaccc catatttatc taaattatct tggtaatatg
      301 acagagtgat tgctcactaa tggtcagtaa cagttttctt tgtcattttc ctagtcatta
      361 cctcctcaga atgaactcca gaataaactg ctgatgcatc gtgactagaa tataaagctt
      421 accatcacaa cagaaaccat ttctattaaa ctcacaaacc tgtacattgg acttctgaca
      481 ttttcattta ctctattaca aactctagag atgagctcta gatagatatc ttattcttaa
      541 aacagaagta aagtaatatt tattttgtac agctgtcttc tattttcttt ctttt
//
LOCUS       KCOD01001893             767 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 210956pyr ultra-conserved element
            locus uce-1170, sequence.
ACCESSION   KCOD01001893
VERSION     KCOD01001893.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 767)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 767)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..767
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="210956pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>767
                     /note="ultra-conserved element locus uce-1170"
BASE COUNT          231 a          140 c          153 g          243 t
ORIGIN      
        1 ttatactgtt ccaagtaata aatatagctt ctggcaattt aatttgtaga taactatggt
       61 tgttcaaaga taggattttt acattaaact tggaatctgc acgactgttt aacatcatta
      121 agggaatatt atattgactg caagtaactg gtttccatgt ggttatatca atctatttct
      181 gtaagactgt acactagttg ttcccctaga gtactccttg taatgctgag aaagtgtcag
      241 aaataatgac tgtctaccta tatctgcaat aaaacgtaga gcatggatat tatagttgta
      301 agtatcaaag atttatttca tgactgcagg taatgatgaa tcttttagca caactaatgt
      361 ctagaggaaa cctctcttct tctctgagct gtcacatgga gactatttat agggccctta
      421 gtgctgtggg gctttagcat aaagaggcaa tgtgtctgag gtgccacggg atggaaatgt
      481 tagcaagggc tccctctcat tgaagatctt ttagtagata gcattagatt ccctctttgt
      541 atgtttacgt ccccccaaag acaggggaca gatgtttaac atcagaccat taatccctta
      601 gcccaggttc ctgtgacagc aaaaacccaa cagaatgagc cctttgcctt tgctcagtgt
      661 aaatgctgca atttactgct gatttacaga gtagggtcag gccattagaa acttggcaat
      721 cttctgtaca gctggaaaac aatatgcatg ataagctaaa attcaat
//
LOCUS       KCOD01001894             647 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 211065pyr ultra-conserved element
            locus uce-3310, sequence.
ACCESSION   KCOD01001894
VERSION     KCOD01001894.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 647)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 647)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..647
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="211065pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>647
                     /note="ultra-conserved element locus uce-3310"
BASE COUNT          211 a          118 c          132 g          186 t
ORIGIN      
        1 tttggaaaga acaaagttct cattatactg actgttgaga ttctcctttg tgaaactgtg
       61 acaaatctaa tagtgttttt taatagagtc aacaggcaga tggatgagat tttagagaga
      121 cagagacaga agtgtataaa cttcagccaa acacaaagaa agagaaactg cctgggaaaa
      181 tgtaactgag agtaactcag catggcttgg tattgggagc tgaacttgca gctttgacaa
      241 ggctgacttt aaggcgacct tcagtgaagc tctttaacag tgtatgctgg gcaatcgctg
      301 gtaaatcttt attaatttta attggcggca cccatttata agaaccatta aaaaggataa
      361 attgagccca tccggcgtaa tgtcttttgt taattagttt gtcagcactg ttttaatatc
      421 ccctaatgac ttcatatttc aggcctgaca ttaaaggaga cgctgtgaga aaggaaatgg
      481 tcttatcacc gtgtaccttt ttttgaacaa aaagtgtcct tccaggcctg accaaggtta
      541 ggtgtcattt aagtcagata gacaggtatc accctatcca aacctcacct tgctactgaa
      601 caacattttt acagacacac aacatcagaa gaaataaaag tcattag
//
LOCUS       KCOD01001895             582 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 211171pyr ultra-conserved element
            locus uce-5866, sequence.
ACCESSION   KCOD01001895
VERSION     KCOD01001895.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 582)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="211171pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>582
                     /note="ultra-conserved element locus uce-5866"
BASE COUNT          183 a           93 c          103 g          203 t
ORIGIN      
        1 ttctacataa tactgctaaa tattctcagc aattcaaatc agtaacattt agatgagcgt
       61 atcatataaa ctcaagtatg tattcctttt aaatcctgct ttcagcataa agacagattg
      121 ttggtgtagt aaattaaagc tgccttactg cagctatttt gtccaatgtt ctttcacggg
      181 cccatattaa tattttatcc cctttaatat cattacatga tgcaggctta atttaaatag
      241 atttgacggg cctcttggtt ggcttgacaa ctagagggaa aaattaatgt tctgcattta
      301 atctcagctc aaggcgctaa attattttgg aggtcgaagc tgtcatgcat atcatgctaa
      361 attattgaat gtaataacta ttagcctgat gtctgtctat agatattgtt tacttcatgc
      421 atcttcagct aattttaaaa ggaacattgc agtacagtac tactgtatct tttacagatg
      481 cattattgga ggcaatcaaa aaatgatgga gttggaagtc tttaaagcta tggaaaaaaa
      541 agagcttttc tgttgtgtga tgtacagaga ctgtgtaaca ta
//
LOCUS       KCOD01001896             685 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 211279pyr ultra-conserved element
            locus uce-1948, sequence.
ACCESSION   KCOD01001896
VERSION     KCOD01001896.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 685)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 685)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..685
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="211279pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>685
                     /note="ultra-conserved element locus uce-1948"
BASE COUNT          192 a          133 c          159 g          201 t
ORIGIN      
        1 ttatatgcat caatttaagt ttggatggca actagggtta ttacaggatg aaaggtatga
       61 tatacatgaa agctgctttt gtggttatat tataaaataa tacatttcta tcacataatg
      121 taccactgct ttatttacag tgcttcactg caaccatatt ttactatcat gagacattcc
      181 ttgaccaaaa atgttgtttc taatcacaga gtaaataata agattgacag tctaaattaa
      241 actaatttag tcaaatatgt gctaccataa ctaggccata gcagtgtgtg ctgccgtgca
      301 agagactagg gtttaattct tggattctgc ttctcactcc atgagcagga gctaggagca
      361 ctccagagct gcagcctcaa ccctgggagg gatggagcct tgtgtcattc aacagcagtg
      421 acccccactg gccaatttaa ggagaagcat tgaggggctc taaaaggagt cacttccagt
      481 cctcctcaga ggttggtggt cattgcacgg gatctagtga gtggaggttc aatggggtgc
      541 acttggtggg gtcttcagct ttcagtctga ggagcagaat cctctgggga ggaaacagca
      601 tgtgcgcttc ctgagacact atttttgcct gctataacta taagtggcaa gattgtcaag
      661 accgatgtcc tgtaactaat gctgt
//
LOCUS       KCOD01001897             677 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 211388pyr ultra-conserved element
            locus uce-5998, sequence.
ACCESSION   KCOD01001897
VERSION     KCOD01001897.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 677)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 677)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..677
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="211388pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>677
                     /note="ultra-conserved element locus uce-5998"
BASE COUNT          218 a          106 c          145 g          208 t
ORIGIN      
        1 tttaagcagg agaatgcacc tgagacgtga ctgacctgct tctgaaggga gctgcccaag
       61 agctacgtgt atcagccttt tgtcatcctg ccaggattgg actgtaccat gctgcaaagt
      121 caggaaaatg agccaggaac atgggcaagg agagcagagt tgctcctttt agctttatat
      181 tgcagttctg ctaaatgtag attcttccca aaactgtttt aagattaatg tagaacaaaa
      241 tgaggaagca ggagtggttt ggtgacatta ttttgacatg attggctgag gattatgatg
      301 taataggtta cagtgcagcc ccttataggt tttaaaatga attccaagac accattacaa
      361 agacagcctg actcctttct tgtatctgag gttactcagt gaaactcata caaatgtaca
      421 atactgtttg gaatatggaa gaactggata tagaatatcc taagacagat ataaattgtg
      481 gcacagactt gatgttttac atagaaatgg atccaccagg taaaactgct tatagaagac
      541 aattttggtc tttacaatag ctgttaaaaa aatcttactg gatatgtggg atttctttac
      601 tttgttattg atacaaatag ttttctcata aattagaata aaatagtgca tggttgtagt
      661 aattagaatc ttgaaat
//
LOCUS       KCOD01001898             414 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 211494pyr ultra-conserved element
            locus uce-4485, sequence.
ACCESSION   KCOD01001898
VERSION     KCOD01001898.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 414)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 414)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..414
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="211494pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>414
                     /note="ultra-conserved element locus uce-4485"
BASE COUNT          143 a           57 c           78 g          136 t
ORIGIN      
        1 tagaataaca gcgtaagaaa tctttttgta tgaacagtat tcttattctt caaataatct
       61 aattgattgt tcatcgggct cagtcagcca aaagtggaga gaaactttgt acagacatca
      121 ttagtttttc tccatttaaa gattaatcat gaagagctct ggctctttaa ttctgtaatt
      181 tgtatattta atgggctgct gcagaatcta tgacagtaat tagcatagcc tgaaaactca
      241 ttaatacgca acaacatgat taatgcagca ttaatgcaaa catgactgaa gttatttggg
      301 ttatgtagta agaagattaa agctaaaatg tcctgtttgt tttgccagta gtgggtataa
      361 tggggtagca agcaaaataa gaaaaaacag gtatcaaatt agtcatttta gtgt
//
LOCUS       KCOD01001899             707 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 211604pyr ultra-conserved element
            locus uce-868, sequence.
ACCESSION   KCOD01001899
VERSION     KCOD01001899.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 707)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 707)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="211604pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>707
                     /note="ultra-conserved element locus uce-868"
BASE COUNT          211 a          135 c          116 g          245 t
ORIGIN      
        1 tttctgtttc ctctccagaa acctctaaga aatgttcaga ttgttgctgc ctaataaatg
       61 ttaataaatg ccaacaattt agcctgacaa taacatggat tgaccacatt gattaaattg
      121 attatgtttc atatatttac aatatgtaga cacaagccta atttattttc tgaagagttc
      181 aaggtagata tcaccgggca aaacaaaaca atggagtaat gtttgtggtt gctatctgca
      241 ataatctaat gctgacagag agcagtattt tatttagtaa ttaacagtgt aaaggggaga
      301 gaagctgtca tgttggttct taagctgggg aatgtgatga aagatgatat ctgcgatctc
      361 atcctttcca cttgtttagg attgtcagaa tgagaaatgt cagcattatg aaagctcagc
      421 tctgctcttg atatgataaa acccttcaaa agccagtctt tctttccctc ctttctccct
      481 ctcctgcttg cacttgcttt ttttatttat cctgttttgt tagatggcag aaatataatt
      541 cttttctttc ttcccattat aagccaccat ttttgtttta ttatatgttt cacaacccct
      601 aatgccccac tgaaaattac cttgttaaat gacagtgttt caaagccatg aatcctttcc
      661 accattccct cagaggtttg aaacagtcaa cagactgtaa agaataa
//
LOCUS       KCOD01001900             591 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 211716pyr ultra-conserved element
            locus uce-1390, sequence.
ACCESSION   KCOD01001900
VERSION     KCOD01001900.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 591)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 591)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..591
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="211716pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>591
                     /note="ultra-conserved element locus uce-1390"
BASE COUNT          199 a          117 c          106 g          169 t
ORIGIN      
        1 tttcttgcgg cagctgaaaa gcttactatc caaatcctga atattttata gaaaataaaa
       61 tgatatttat ttttaagtgc attctacctt caacacaact gcatcctcac aacaaatcta
      121 ttgcgttgtc ctgacatagt tactgcaaag gtttttcctt tgctgtccca agggcccaat
      181 tgatttatct gccagaagcc taaagcccca aaataagatc gctttgagtt tacagaggtc
      241 atttttcatt gtctaaataa aaatttctaa acaaaaatct ctcatcctgt taaccgcagg
      301 gtccttatct ccccagaggc tacagaaacc tgagagaagc catttcaatt cttttatgaa
      361 gaaagataaa agcaagtttt cgattagaaa gccaaggaaa ggcttcttat taaatggtgg
      421 taacagtaac tagtcgaaaa ggcaaaaccg ttcaaggaag ggaaagaggg aaatcattat
      481 gcatgaagca aacactatac atgaggctgc caaggcaatc tgagacagtg acattcggga
      541 agggaagttc acaagccttt gtaactagtt atagttcatt cccatctatt t
//
LOCUS       KCOD01001901             625 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 211825pyr ultra-conserved element
            locus uce-5759, sequence.
ACCESSION   KCOD01001901
VERSION     KCOD01001901.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 625)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="211825pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>625
                     /note="ultra-conserved element locus uce-5759"
BASE COUNT          177 a          135 c          127 g          186 t
ORIGIN      
        1 tgactgagca tctgagtggt tttccgcctc gagactttgg acaatgtgtt tccagagcaa
       61 aaggacaaca agagttgact ctgtattaat gccagacttt aaatgttttg actataaaac
      121 tgaaacacca ttacctattc cctgcagagc tccgcttccc tctctctcct tgccttctcc
      181 tctccacact gtagcctttt gtatgtctca ggcattaatc cctcgctgcc gggttgtgta
      241 aattaaagaa taatagagct gcagaggcat aagctcgcaa tgatggggaa tgtgtttgta
      301 tgctaagaag caatttcagt gaaaattaac tcaatttcat ctgaaatagt gaagaccggc
      361 ataagctggc agatccctga ggatggtaaa attactttgt caaagctctg cttgcttaaa
      421 ttaaccaagc aagcactcca ggttattggc aagatgcagc tagtaactag gttttaataa
      481 acaaaaatag ctttttggat aaataagaaa agtgcaaagc atcttatgca ttctgctgat
      541 gtgttcatct gtgtgtcctc agcagcaaga ccttcacatt ccttcaggag ctttctggct
      601 ggtctgtctt cagagcctct gcaaa
//
LOCUS       KCOD01001902             767 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 211934pyr ultra-conserved element
            locus uce-53, sequence.
ACCESSION   KCOD01001902
VERSION     KCOD01001902.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 767)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 767)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..767
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="211934pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>767
                     /note="ultra-conserved element locus uce-53"
BASE COUNT          224 a          156 c          115 g          272 t
ORIGIN      
        1 attcatactc ttgattttat cacctggcta ttagtctaaa aacttttttt tccatttacc
       61 ttggagctga tatgctgaaa gcaccatgtt tgaggtggaa aatgccaagc ctcttttgag
      121 gtcaggaaat tcacatttta atacatgaat tcaagtatag gcgagattgt tattattatt
      181 cttcgccttc tccaattcca ttttagttag ctccctttta attgcatgta tcagcaaaca
      241 ttgaataatg attttatcta tattctaaat ttagagcagt taaatgcaaa gcaaaatgca
      301 gacactttct tgtgtcttaa ttgaatgaag gtcacagcta taacaatatt taattgagct
      361 atttttcatt atcatatttt aatgactttg cactgacagt tcgcctgctt ctgaggaaag
      421 agcatgatga agtcgtttat ttccctattt agttattgtt tgacaacatc atcttcgatt
      481 aagactctgc tttatagcac attaatcata tttgaatgag caaggggtat aaatgtaaac
      541 atatctccca tcctctgtgt ttccccatgt ccctgcatga aagcaggcta aacaaatgct
      601 tgcatctatt gtctgtttgc ataatagcca acaacaaggc taaacaccag tcctcagcaa
      661 tctaattgtc accaccccta tctcaccctt gcacctttca ggaagaagtt atgatcttcc
      721 acttctgaat gctcaataat tgtcccattt atctcaattt gcagttc
//
LOCUS       KCOD01001903             558 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 212046pyr ultra-conserved element
            locus uce-7806, sequence.
ACCESSION   KCOD01001903
VERSION     KCOD01001903.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 558)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 558)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="212046pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>558
                     /note="ultra-conserved element locus uce-7806"
BASE COUNT          138 a          136 c          105 g          179 t
ORIGIN      
        1 tccctctcat catgggaggc aaagaagaca ggaaacaact tcagaggatt gagtcaaaca
       61 tttctgagat gagtggcagt gtgacacaga caggtaaaga ttaatgactc catcaattca
      121 cccctcaaag ctcttctccc tctatcctcc attctgccaa gacccccacc cttttctttc
      181 cctccatctc cactttatgt ggtgacttca tttatctgct ctgagaatct gttcacattt
      241 gcaaatgaag ccgccgtcat ttcggtttaa tttgaaattg cttgtttact gtcggcacgg
      301 cctcaattaa ttatgttttt acggaaaggc tcccaacctc agaatattaa taaggggaat
      361 aaaatgacag ccttttggag ggctgtaaag ttcattttta atttctgctt ctctgatatt
      421 tcaggggctt tttggtggtt tctccccacc ttccatctga aaatccaagg aagggtcagg
      481 agagtctgta attactgtgc ctccctgacc ttagccacct tctctgttat tgactctata
      541 gggtgtctgt tcattacc
//
LOCUS       KCOD01001904             597 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 212158pyr ultra-conserved element
            locus uce-3440, sequence.
ACCESSION   KCOD01001904
VERSION     KCOD01001904.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 597)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 597)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..597
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="212158pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>597
                     /note="ultra-conserved element locus uce-3440"
BASE COUNT          163 a          104 c          136 g          194 t
ORIGIN      
        1 ttgctgtgat tcattttcag tgcatttttc ctaatggaag tagactgcat aaaagaatgg
       61 caaagctaat ctactgtaac aaactttgga tccagcttct gtgaagtggc tggttacatt
      121 ctaatttctg tgttgtgttc tagcttatag accagttaaa acctggcgga agattgatat
      181 taccagttgg ccctgctggg ggaaaccaga tgctcgaaca gtatgacaaa ctagaagatg
      241 gcagtgtcaa aatgaagcct ctgatgggag tgatatatgt gcctttaaca gataaagaga
      301 agcagtggtc caggtggaag tgattttctg ttccacttac ttcttccaca cacatgcaag
      361 gtgaaagggt gtgaattttt agcagataga ctgcaaggcc tgcctttgct gctgtcattg
      421 ctttctgctt ctccatacca tgaaaagtga ctcagtctgc attactacat cacccaaagg
      481 aggttatgct aagtttgagt tcaattaaaa gcagaagaaa aatattgcat gggttgcact
      541 ttgtcggaca tgttttcttt agtctttggt gttttgaaga ttcttatttg ttgtttt
//
LOCUS       KCOD01001905             532 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 212268pyr ultra-conserved element
            locus uce-1128, sequence.
ACCESSION   KCOD01001905
VERSION     KCOD01001905.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 532)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 532)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="212268pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>532
                     /note="ultra-conserved element locus uce-1128"
BASE COUNT          152 a          104 c          131 g          145 t
ORIGIN      
        1 taattgtgtg aatgcagagt tttgaaccca atttcaggtt acacaataca gcagaatggg
       61 atgtgattga aaaggctgcg agggaaggat gagaacacgt cctttcttct agccatgact
      121 attttgttgt gtctgttatc taaccctgta attaggacgg cattcagaaa atgcgaacaa
      181 agttggtatt cttttcataa cccccaaatc tttgcattgc tgcatgaaac ttttggcttc
      241 agcttttccc tgttcattaa ccatgccaaa atttttaatc taacaccact gttaaagagt
      301 ggcaggcttc cagggaaata tatcagccag gcttattaat ttcatgccaa gtgctggagg
      361 cgtgaatgta gagaacgctg tttgagtttg gataatagga atcaggcagc ttaaaggcag
      421 gggataaaga tcaggagccc cgtgtctcaa gaggaggagc aggtgcaggc tgcaagcaag
      481 gccttcaggc ccaaaggggc agccagtgct taaaacaatc tgcggtgcct tt
//
LOCUS       KCOD01001906             789 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 212380pyr ultra-conserved element
            locus uce-3826, sequence.
ACCESSION   KCOD01001906
VERSION     KCOD01001906.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 789)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 789)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..789
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="212380pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>789
                     /note="ultra-conserved element locus uce-3826"
BASE COUNT          233 a          152 c          144 g          260 t
ORIGIN      
        1 tactgactga aaacagctaa taaaggctca gttcaaagct gtctatttct tggtgggggg
       61 gaaagatgtt attctgacat cattgctctg aatgagcagc ctgtggttca tacagtatac
      121 gctcccctgg aatgacaaat tttctgcctt tttcttgggg ggaatgttca ggcaaaagga
      181 aaaaatgcat aagagaagca aagaaaattc atttgtataa gctggccccc ctactgtgga
      241 attttcaatt atatatatct aattatggct gtcagttgat gaattgagaa aagacatttt
      301 ttgtcccccc tccttttttt gtctcttcgt catctcttct gttagaatga ttatagcaca
      361 cttacacaac taattgcctt actgcttatt agtgatacaa ttatgcaggc cagactcctt
      421 gtgtgaacaa ccatctgcag agaaaaaaaa agtgacacta ttcaaaacta tccataattt
      481 aaccaatgtt attccaatgc actgagctca gacaattgtt gggccttcat atttcatacc
      541 caccctggaa aaagagggtt gtgggttttt tttctttttt tctctctttc tctctttttc
      601 tctgtgcact gattcacctc tttagactca ctgtgaattg gaaagaaaga aaaaaaaagt
      661 gcttcatatg tcaacaaaaa ggagggaact gaagcatggc taatgcccat tcctcctgtg
      721 ggcaattttt cttcaaattt taaactaata ggcatttttt tctgctttag aaacagttga
      781 gaaagtgca
//
LOCUS       KCOD01001907             398 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 212487pyr ultra-conserved element
            locus uce-5235, sequence.
ACCESSION   KCOD01001907
VERSION     KCOD01001907.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 398)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 398)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..398
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="212487pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>398
                     /note="ultra-conserved element locus uce-5235"
BASE COUNT          121 a           61 c           74 g          142 t
ORIGIN      
        1 aagagaagtg acagtcaagg gttaaattac gaaattttgc aatttatttc tcatcattta
       61 tgagattgtt aaatgtcaga aagtggactt tttttttact atcagtataa aactgaacat
      121 actgtgagac ataaggtagc aggtgtcttg gctctaaact atcaagtctg tgggcattct
      181 gttataacag gtgctccaaa aatttgaaca gattttaaca agagctgtat gggcttttta
      241 attagcctgg ttactcagca tgtggagaaa gcactaggta tgtgcttaaa acaccattgt
      301 atcttgcaaa caaatgtttc acatacccat agtcattctt ttggttgtta tcttaaaatt
      361 cctttctatc tgatgctagg atttgattct tgtattca
//
LOCUS       KCOD01001908             581 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 212597pyr ultra-conserved element
            locus uce-1500, sequence.
ACCESSION   KCOD01001908
VERSION     KCOD01001908.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 581)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 581)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..581
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="212597pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>581
                     /note="ultra-conserved element locus uce-1500"
BASE COUNT          200 a           96 c          103 g          182 t
ORIGIN      
        1 gagccacata aagcttaatt tcagttgcaa attgcaagct ggaataagtt ccagaatagt
       61 aaacaattag ctgctttatt ttctttttaa taagactaaa ttaccagata atatctactg
      121 gcatcaactt ggctaataaa aatctgttta ataggatttg ccatttttcc agttgctatc
      181 atgatcagct ttgcattttg attatcttta aactttgcct caattttctc atagaaaagc
      241 tctcagtagt aattgcttta acatttattc caggtcaagt ggttaagtat gaataatgat
      301 gtgtcaaaaa tgtacagtag tgctgtcaat agagcaatta ccatttagct agagattatt
      361 atggcacaag agcacattaa ctgggcacag taaacagaac aacaaagaaa gaaggggcaa
      421 agggaacaaa ctgatttcaa acccttccag tgttatacag ggtgtgttac tgccagatat
      481 tagttgttac ataagagcaa ttaagcctgc aatcagcttc actcggcagc attggattag
      541 aatgtttcca attagaacaa gaagttaaaa gcatgtttct a
//
LOCUS       KCOD01001909             708 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 212701pyr ultra-conserved element
            locus uce-95, sequence.
ACCESSION   KCOD01001909
VERSION     KCOD01001909.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 708)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 708)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..708
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="212701pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>708
                     /note="ultra-conserved element locus uce-95"
BASE COUNT          228 a          138 c          163 g          179 t
ORIGIN      
        1 agattagaaa gtctcagagt cagtgacaaa cccctgtgcg gcatctgatt taggttttta
       61 ataaaggtca gggagaaata atctccaaag acaacagtgt ctcttactct tttacacccc
      121 tttacagcta aaacacacac acgcacacac aaaaggaaac aacaaccaaa gaggagggga
      181 aaaaaagcct gaaattttag ttacaccaca tgtggttttc atttgtgaaa aatgaacaag
      241 ctgtttgtgg ttaaactgtc taatctgctg ttatcaatct agcactgcat tcaagattta
      301 caggatacat cagcttctgt gccacattag ctgtaaaagg gagagggggt gggaggaaaa
      361 aggaggagga gagagtttat cctgaggaat aatatttcca atgcagccac actcacacta
      421 catctggttg tgctggtagc ggcagttaaa ttgaaatatt tcacagcgtg tgtcagaaac
      481 atgcagaatg gtaattatga cagatctgat taagcctgag tgccactagc tccctggcca
      541 gctccggttg tgcaggtgtg accttgtgcg tgcctgcgtg tgtaaataaa attaattaca
      601 agcgagaggg cgaaggcttc agtgacatca caaagcggag aaactcccaa gggggagacc
      661 taatggaata ttttccctca gtctaataat acagttcata ttgacttg
//
LOCUS       KCOD01001910             799 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 212809pyr ultra-conserved element
            locus uce-1012, sequence.
ACCESSION   KCOD01001910
VERSION     KCOD01001910.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 799)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 799)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..799
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="212809pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>799
                     /note="ultra-conserved element locus uce-1012"
BASE COUNT          206 a          164 c          158 g          271 t
ORIGIN      
        1 ttttaatata aaaaggcttt taggcataac tatatggaga gatatataaa taatattaat
       61 ttccccattt acttctctag ctgtttttgc aagaatgaat gtggattaac attgttatcc
      121 tttcctaaca attatctttc gctactctag ctagtttagt tctaaaagac agagccattg
      181 acaagggaaa aaagggaacc ttctcagatt tttcagctca gcggtggtaa tgttgctctg
      241 aacactaatg agggaacccc cactgatttg cctgctttgt gacttttcta tttcataatt
      301 atttttaaaa cgcaaaacga catgaggtag cccagtcatg tctctacaac ttcctggtag
      361 ctcagttctt actgcagatg gcaatttgtt cttgtaacat atatgtctct ctgaccattt
      421 tcatctaatt tgtatgggtt ctaccatttc ctttctctct ttcagggacc ttgctgtgtg
      481 tgagctaggg ggtggcatga catgcttggc tgggctcatg gtaggtcttt tctcaattcc
      541 aatcccattc agaggaagaa acaaaaggaa aaatgttcca gtgcctccaa ctgctgggtc
      601 agagaactgt caacagcctc agctgcggtc aagctgcaga gtcttgagag accttctaga
      661 ttgacttgct ttcgtatcat attgatttta tggttgcctc gatgagcaga aacattttac
      721 ctcggtgtag tcaatatctt ttgttgtgac attccaggcc acgtacggtc tgtctttcat
      781 tgccatagcc gaagctttt
//
LOCUS       KCOD01001911             531 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 212914pyr ultra-conserved element
            locus uce-5479, sequence.
ACCESSION   KCOD01001911
VERSION     KCOD01001911.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 531)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 531)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..531
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="212914pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>531
                     /note="ultra-conserved element locus uce-5479"
BASE COUNT          133 a           95 c          111 g          192 t
ORIGIN      
        1 tgcctccgct ttatattgca gtttttggaa actgcaaaaa gcttccatac tgctgaatga
       61 aagtacagtc tgatgattct gtctcatagg tgtcattttt tgttaggttt cttttttgga
      121 tgggagctgg aaatatttct gtattcaaca aagttgttgt tccagttcaa agtgcgatca
      181 agacttgtca agaggtgtaa aattgtttta agttttattt tattttgtat ttaatgtgat
      241 tatgtgcctt taaaatgttc tcccttccat tctgcccttg tatctttgca gtcattgtat
      301 acagcagatt ctagaaagtg ttaatcattg tcatctaaat ggcatagttc acagagacct
      361 gaaggtcagt atctggtgcc catcaattgg atataagaat tttggggttt tctttccgct
      421 gggtaggggc agagggtggg atgtgttccc ttgcctaaca accagtccaa ccaataatgc
      481 atgacgcctc tttccagttt gcaagtctac aggcctaata tacatcatgg c
//
LOCUS       KCOD01001912             511 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 213020pyr ultra-conserved element
            locus uce-3557, sequence.
ACCESSION   KCOD01001912
VERSION     KCOD01001912.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 511)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 511)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..511
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="213020pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>511
                     /note="ultra-conserved element locus uce-3557"
BASE COUNT          187 a           96 c           75 g          153 t
ORIGIN      
        1 cctccacaat gatgacagct ataaacatct tgttccaccc tttcatagat gtgcaaaatg
       61 tgttgtcaat cctttctgta ataaaagaat gctgaggcgc catcacacaa aagcctgttt
      121 tttccaaaca gcaaatgtct ataaaaatac agtcctactt ctctgtgata gataagaaat
      181 actaaaggag caataataat taatggccat acaagatgaa actccagtta ctcagacggc
      241 tgtctccaca taatctgtat tttatacaaa aggagaaaga actcaatgga atttcagctg
      301 tgaccggata aaaactgcca acaaaaagtg ataaggaaag tctaatgtgc atattaatca
      361 tgtttatagc gcctcatttg ctgatatatt agcctaaact ccctttcaaa atacattttt
      421 gatcactggt agaatcattt aatacaatca aacttgaaat aggaccaatt aatgtttcca
      481 tcttctatta attaaaagta attgattatg a
//
LOCUS       KCOD01001913             587 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 213127pyr ultra-conserved element
            locus uce-6770, sequence.
ACCESSION   KCOD01001913
VERSION     KCOD01001913.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 587)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 587)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..587
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="213127pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>587
                     /note="ultra-conserved element locus uce-6770"
BASE COUNT          195 a          122 c           93 g          177 t
ORIGIN      
        1 agtcttcagc ataaataaca cactttaaaa actaccaata aagggaattt aaaagttagt
       61 tgttgattgt acaaagaacg agccatatac tttttgcctc cttgttctcc tcaggagtcc
      121 attacctttc acaaagaaaa ttttagctat caaacttgtc cataaatttt gccgctgagt
      181 gtgaaaccat ccagttagca tatacactat catttgcata tcttgaaaac acagagttag
      241 tgccatcgaa tcttgtgagt ggaacggggc tctcctcagg ccagttcggg tatgacatgc
      301 ctaaaaatga aaacagataa ttttttctgc actgaagaac cataacttca tgtgcagaca
      361 gtaaggccct tggcaaaact cccttcttta agccagtcca ctggattttg tcccaaatca
      421 attcatataa atgatgtttt gaaatccctg aagcacaaat tctgatgcag acaaaaaccc
      481 tggataaatt aaagtgctta ctcgattgca catgtgcata ataaaaagcg aagaattgtt
      541 cttctcatcc aactttccat aatttttatt ttaacaatca tgtagca
//
LOCUS       KCOD01001914             456 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 213227pyr ultra-conserved element
            locus uce-2169, sequence.
ACCESSION   KCOD01001914
VERSION     KCOD01001914.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 456)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 456)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..456
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="213227pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>456
                     /note="ultra-conserved element locus uce-2169"
BASE COUNT          133 a          101 c          149 g           73 t
ORIGIN      
        1 ggagtgatag gtaaccagtc gcttcctact gaaaacagtc tcaggaagag gtctaaaagt
       61 taggagcaca gcagagcagg gccttatggg tgagcaacag cttgtgtggg aaggaaggcc
      121 gagcacttgt tgccctgttc ctgaccccag gttacaagac agatccatga gcatgagcag
      181 gagaacgagc tgcgggaaca gatgtcagga tataagcgga tgcggcgcca gcaccagaag
      241 cagctgatcg ccctggagaa caagttgaag gccgagatgg acgagcaccg cctcaagctg
      301 cagaaggagg tggagacaca tgccaacaac tcgtccattg agctggagaa gctggccaag
      361 aagcaagtgg ctgtgatgga gaaggaggtg agtgcaggga gctgtccctg aggatccaag
      421 acaggagaaa ggtctccaag agttgctgct caaacc
//
LOCUS       KCOD01001915             574 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 213329pyr ultra-conserved element
            locus uce-2697, sequence.
ACCESSION   KCOD01001915
VERSION     KCOD01001915.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 574)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 574)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..574
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="213329pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>574
                     /note="ultra-conserved element locus uce-2697"
BASE COUNT          177 a          106 c          121 g          170 t
ORIGIN      
        1 actagacagt ccccggggat ctgtggtttg aaagtaaaat gggtattgtc tgtacctctt
       61 taggctgttt tccagcatgt tgttgctgta aaagttgaag ctgcaactgt tcctgttgtt
      121 tcttataaaa ctcttgaagc tgctgctaca aagaaaagga aagatggtaa agtggagagc
      181 caattcagtg tcccttttgg tgtaacacac aaactgtgat ttgaaaaata gcatcctttt
      241 atctgtaatg gtctgacctt tagtttgaaa ctcaacaata aattcagtgc acactgacta
      301 ttcttggcat tatcgtttga aaagtaatct ccaaaatgaa ctgatgaaaa acataccatt
      361 ttctacacaa actaattaaa ataaggcaag gaatgacctt tgattgtaac aacaaagcca
      421 aaatgccctt gctgagggcg aatctctgtt gtgaaacaca catgctttct aaatgatagg
      481 gtttgactgt attaagtgtt gttcaataca tgcatagaca tcctgggaaa tacttgtgct
      541 ctgcacagac agcgctccgg ggcaggaggg agcc
//
LOCUS       KCOD01001916             362 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 213430pyr ultra-conserved element
            locus uce-5502, sequence.
ACCESSION   KCOD01001916
VERSION     KCOD01001916.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 362)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 362)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..362
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="213430pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>362
                     /note="ultra-conserved element locus uce-5502"
BASE COUNT           93 a           85 c           92 g           92 t
ORIGIN      
        1 gttcatgtcc tgaatgggcc aggcttgtta tcagcaaggc gtttacagcc cctgggctgt
       61 gcattaatta aaaaggcttt gtgctgaggc tcattcatta gcacactgct cctttaatca
      121 ctgcctcttc agccaccagg acaatctata aatctcctca aatatgaaat aatgaagtgg
      181 aatggttcaa tttattacaa tgtaataagg caggataatg tagggggtgg cactggagct
      241 gtctccttgg ccagtcttcc cacctcgtta ctgccagcga ccatgagtga gaagggcagg
      301 agggatgcag gacaggatgg agaatgcacg ggacagggac cttcccatat cctgccgtcc
      361 ct
//
LOCUS       KCOD01001917             766 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 213532pyr ultra-conserved element
            locus uce-1408, sequence.
ACCESSION   KCOD01001917
VERSION     KCOD01001917.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 766)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 766)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..766
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="213532pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>766
                     /note="ultra-conserved element locus uce-1408"
BASE COUNT          221 a          128 c          168 g          249 t
ORIGIN      
        1 tttcggcccc atggtgtgca tattgtgtgt gacaggggga gagcaagtgc gtgtgtgtca
       61 tttacaaatg caaagataac agcaagttct tacttggcac caaatggggg accgttaagt
      121 atgagaaatg atgtcgattt atcattatat tatgcctctg acagcgaaac acacctgtac
      181 tttttatgta atttattgac tggttataga tgctgtgcga gagaggaaaa aattagcgca
      241 gctttaatta ctcatgctgc tggttaaaat attaatgggg cacagagtgt tgcatgctca
      301 tttctgttga tttttaatta gcagtaattc attttgcaca aagcatgttg atgcctttgc
      361 cggagacatt agcgaagtag ctgaataaag atgtttttga gagagctact gtgcatacag
      421 aataaagagt gcctgctttc tgtcttgtct gataaaagtt gggcaaagag ggagacagat
      481 gatgaaacca aacaatacca gagcatcatg gtatagcttt acattcctga ctttaacaaa
      541 tttggagttt tccagctgcc tggttctctg gaatatccaa gtaccttttt ttgattatta
      601 tttttgactg ttgccgaaac cagccaggat gggtgaaggc agtttttgcc attaatgtca
      661 taaaaatatt ttctcataga aaaatacctt ctgatctgtt ggttgggata agactctccc
      721 ttctttctct tatcaagata catctacatt tcacagtgga aatgat
//
LOCUS       KCOD01001918             554 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 213641pyr ultra-conserved element
            locus uce-6381, sequence.
ACCESSION   KCOD01001918
VERSION     KCOD01001918.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 554)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 554)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..554
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="213641pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>554
                     /note="ultra-conserved element locus uce-6381"
BASE COUNT          153 a           93 c          134 g          174 t
ORIGIN      
        1 aagttccatc agaaacaaag tagttctttg gatggttcct cttttttttt ttgtccaaag
       61 atggcatctg agttttatct aaaccagacg gtttcttggc cctcattttt ccctaaaccc
      121 agcaatgaca aagagcaacg gctgcataaa ttggatgtaa gaagaacact tagggtttat
      181 cacagaagaa tcaaagattt catatcttct gacagattgt ttgtactctt agggggtctt
      241 aagaggggtc aaatggcttc taagagttgc ttagctagat ggttaaggga ttgtattaga
      301 gaggcgtatg tagttaaggg taaagaggct cccagggttt gtaaagctca ttacactagg
      361 actatagctg cttcttgggc ggagaggtcg aaggcttcca cattggaaat ttgcaaggtg
      421 gccacctggg cttctcttca tactttttca ttgcattatt gcttggatgt agtctcttct
      481 gcagattctg cttttggtag gaggttgctt gtgaaccaaa aaaagaacag tgaagaaaag
      541 aaagacgtgt agtt
//
LOCUS       KCOD01001919             344 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 213745pyr ultra-conserved element
            locus uce-7491, sequence.
ACCESSION   KCOD01001919
VERSION     KCOD01001919.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 344)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 344)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..344
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="213745pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>344
                     /note="ultra-conserved element locus uce-7491"
BASE COUNT           90 a           98 c           66 g           90 t
ORIGIN      
        1 gccgcgctcc gacagccttt ccgctgggga tgcccacgtg gcaccgcagc gcccctcgca
       61 tggcatatgg tgtctggatt catacaagat gcaaaactat tctgccgcta atgcacaatg
      121 actcatagca ttgctaattt ttccaacaaa agcccacttc cacacccaca cttttaaccc
      181 ctcaggctaa aaagcctctt ctttagtttc aaagccatgg aaatgtaagg cttctggatc
      241 aatatctgaa accctatatt tatttaaagc atatgcacgc tccaacgctt attttaaatt
      301 tcggtgaaag ccggtttgca aatcgccgct ctgacgtgcg gcag
//
LOCUS       KCOD01001920             425 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 213849pyr ultra-conserved element
            locus uce-319, sequence.
ACCESSION   KCOD01001920
VERSION     KCOD01001920.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 425)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 425)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..425
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="213849pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>425
                     /note="ultra-conserved element locus uce-319"
BASE COUNT          114 a           86 c           90 g          135 t
ORIGIN      
        1 ccccaattca cgtttcagct ggaggaaaaa tagagtgtga gttgatcaga aaataatatt
       61 gtgagggctt gtgttttgtg gtcattggaa gattgctgat gggtgcataa ataaagcatg
      121 ctggaacatc tgttctttgt tgtgcattca gctttttaat gtcttcaaag agcagcactg
      181 acgcatcact gactaccact ccccattcaa gcaacatttt accagaaaat aataaacctt
      241 cctggtgggg tgcaaggagc caaggcattt gggcaatgcc attaatttgg aaatatctct
      301 ttttctggga tttttaaata tctctccctt tgaacggtgt tcaaattttg ggatccagcc
      361 tggagtccct atcagcctga gcagtaaatc agcctgaata ttccactcaa gccttttctt
      421 tctgt
//
LOCUS       KCOD01001921             733 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 213958pyr ultra-conserved element
            locus uce-1027, sequence.
ACCESSION   KCOD01001921
VERSION     KCOD01001921.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 733)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 733)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..733
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="213958pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>733
                     /note="ultra-conserved element locus uce-1027"
BASE COUNT          212 a          146 c          130 g          245 t
ORIGIN      
        1 tttctaccaa acctgtgacc tctacagagg tttgaatctg acacaggttg tactttcgca
       61 agaaggctgc agaggaatgg tagaaaatac aacgtattcc cttgccatct tgcttagtgc
      121 catgaggagc tgccacactg gggctggttc cccacaacag tcagacccag cacgcagatc
      181 catgagggat ttcctgttcc agcaacactg tgggacaaac ttgcagaaga agtttctaca
      241 caaagaaaca ggtactcagg gtgggtgcag acttgatttt acaagtacat ctgttctgtt
      301 tatttttgct tctttgcagt gttatcaact tctgctccat atggatgatc catattgtgc
      361 cttggtgaaa tgataccaca ttatgctttt atgcttttat catcaaacac tactcatgaa
      421 aaaatcacca ggtttgccta ggttcatctg ttcaatttat tttcccaaaa ctttattttg
      481 aataaaacac ctacggtaaa tgtgatttat gtaaatgaat aaaccaaaac agttatataa
      541 gctttttgaa tcattcagat tctttctgtt gctgtgtatg gaatactcta ccaacatatt
      601 ttctttgggc tatttaattt ctgaagtctt gcagctgaat atatgaaata ataggacata
      661 tacaaaggct ttcattttga ttttatttcc attctctatg ccaatctttt cagacaagga
      721 agctctaata ttt
//
LOCUS       KCOD01001922             760 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 214056pyr ultra-conserved element
            locus uce-5629, sequence.
ACCESSION   KCOD01001922
VERSION     KCOD01001922.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 760)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 760)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..760
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="214056pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>760
                     /note="ultra-conserved element locus uce-5629"
BASE COUNT          225 a          136 c          144 g          255 t
ORIGIN      
        1 aggagccaat aattttgttt caattgatca gctttttagg cagtatcctt cggttgagac
       61 ttttcagata agtaaagtaa attaggttga aaaaaaaatg ctggttcctg aaatgtggat
      121 ttcacaatgt atttttgatc tgataggagc tcggtagcat ttcttctatc cgctggaggc
      181 ccactgagct gtgtgtactg tactctatca aagcccagtt ctttgcagct cagtgaataa
      241 aatactgcag tttctcccat tgactgactg aaataaaata atctatgatg catgaacaag
      301 tctaaatgaa ataataatat ccttagcagt gaaaaacgga ttggtaatac agtaattgag
      361 cagatttatt gccatctcct tgagctagcc tgctgaaaca gcctgctatt ttatttaatc
      421 tcatatcaga ggaattactg gctggtaatc cattgttaaa catcatttag aatgatggat
      481 gaaaatgtca gcttttccaa cataatcaat tcatatctca ttagcacata ttatttatga
      541 ttctcataat gggacctgca ggggtctcca gggggaaatg gagacctcag ctgttgttga
      601 aatgagatga gatatactgt agcttatgag ttaataactg catataaaaa atacttcccc
      661 acagtattga ttgtccttac cattttacaa atgaattgag tgtcttggct tcccctcttg
      721 ctgtgtatgg cagctcttcc ttctattcat tttgttgctc
//
LOCUS       KCOD01001923             523 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 214153pyr ultra-conserved element
            locus uce-5038, sequence.
ACCESSION   KCOD01001923
VERSION     KCOD01001923.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 523)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 523)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="214153pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>523
                     /note="ultra-conserved element locus uce-5038"
BASE COUNT          167 a           79 c          106 g          171 t
ORIGIN      
        1 ttttaacgtg cagatagcag ggatgtgtaa tgtaaaccat accaccaaac atactatgaa
       61 tatattgctc ttcttaaaaa tgcttgttgg tttttcatac tacagtattg actaactgtc
      121 ggtgtttgat gtacggttta ccagcctgat gtagacttat ggttagagct taacttgtta
      181 gttctgcttt tgcagccaat tcagaataac tacagatgcc ccaagatatt aaaattgact
      241 gctcaaatgg actcagtgtg ggagtttcat tggttttaaa ttgataacag ctgaaagagt
      301 gaatgattaa agctgtatat gggcatagta tgcagctcct ttgtaagagc tcttgtgaac
      361 agaatccact gcatgggaat tgcctttgtt ctaataaaag atatttctga acaattgtta
      421 gtttaaattt ttaaatgatg aaacaagagc atttcaggag cctatagagg aaataattcc
      481 tgagaaactg gaacaactct gagaagataa agtggatttc tat
//
LOCUS       KCOD01001924             801 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 214264pyr ultra-conserved element
            locus uce-7558, sequence.
ACCESSION   KCOD01001924
VERSION     KCOD01001924.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 801)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 801)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..801
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="214264pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>801
                     /note="ultra-conserved element locus uce-7558"
BASE COUNT          208 a          183 c          146 g          264 t
ORIGIN      
        1 aaaaaccagg ctctgaagta tttgttacct ccattgatgt caaatgccct gattttcttt
       61 ggacagggat ctattgcttt aagtttatat tcagtataaa tatcatatgc aataataaat
      121 cttaggagca catgctcaga ttattttgtt tataatttta tttagtgtaa cgcttttcat
      181 tccattcctg tatttctcct tcctgtgtaa caaccttgta aaagtgacag ggaggctcag
      241 atctttgccc agcaaacaat atatattatt tgctacatga aagtggtgca caactctctt
      301 aaatgttccc tagcagactc ctattgcatt ccacaatgtg cctgcacttg aaccacctcc
      361 attcatatca gagtcttttt atcccagcac acattgagca agctgctctg aagcttaatt
      421 ctcctgaccc ttcagtgcag tcggatattg tcacctaatc cccccttctg tcccatgtgt
      481 ggttttgact tctttctctt ctcaattcct ttttcctctt ccctttttct ttctttctta
      541 ttctataagc ctctctccag gctccacatt ccagaattca tccttgcatt agggctgcaa
      601 tacaatgctc tcccagtgtt aaaggattag acattaagga gactgtggca actccagcct
      661 tactctgtgc acagggggag cataaggggg agcgcccgct aaagaggaag gaggctgaga
      721 aacaatctta gtaaaaccag agtgggtgag gtttgtgtgg ctaaaagtgt tgaacactct
      781 ttttggaaga cagtaaagca g
//
LOCUS       KCOD01001925             646 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 214373pyr ultra-conserved element
            locus uce-2233, sequence.
ACCESSION   KCOD01001925
VERSION     KCOD01001925.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 646)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 646)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..646
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="214373pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>646
                     /note="ultra-conserved element locus uce-2233"
BASE COUNT          171 a          146 c          128 g          201 t
ORIGIN      
        1 tttcctgttg taggatcaaa ccctgccact attttttttt tcacctagaa gaaaacagag
       61 tagtcaattg agtaccgttt ctactctgtg aggctcagtt tactaacagt gagtttagtt
      121 aacttcatat tttggacaag cttgtaaatt tgttccgttc taatgctgtg atgttatcaa
      181 ggttgtactg ttttcctttc ccccatcttc tttcttttcg aagtgcagcc ttctgatcaa
      241 tgtgcaccca tttccctaaa tacatcatga aaaaggatga ggtttccgcc ttaattgctt
      301 gtgcctttta ttcacattcc tctctcagcc agaattgtga aaagagtgtt agtaaaaggc
      361 tgcacaatag agcttttcat taggcctcaa caaggcacac aaaagaaggc ttttggaaag
      421 agtgcaggac tttaatttgc aggtggagag tagataaaag gtgctgacgc ctctattatt
      481 ctcttactta ggtgacccct accccgttca gctgatccca actaccatgg cagctgctgc
      541 cgcagcaaca ccgggcttag gcccactcca actgcaggta agtcccagca caatgcagag
      601 gaggcaaagg ttaagtaaat atgaaaacca gttttctctt cctttg
//
LOCUS       KCOD01001926             301 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 214479pyr ultra-conserved element
            locus uce-3709, sequence.
ACCESSION   KCOD01001926
VERSION     KCOD01001926.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 301)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 301)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..301
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="214479pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>301
                     /note="ultra-conserved element locus uce-3709"
BASE COUNT           98 a           54 c           48 g          101 t
ORIGIN      
        1 ctcgctctct cattaggaaa ataaaagaga ctttgaaata ttaagagaga gtgggattag
       61 agccctctcc tgctacccca gtctttcctc ccctattaat ttccacttga ttagaattct
      121 ttttgaagta tttaaatatg gacaatagga aaaagggagg gtgaagttat tgaatatcag
      181 ttaaactgta ttaatataag ctcagttcca gcttttatat agatacttca tatatatgta
      241 tagtttccac taggaataaa gtagatctat ccctcctccc ctacctaaag taattatgat
      301 t
//
LOCUS       KCOD01001927             629 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 214584pyr ultra-conserved element
            locus uce-6, sequence.
ACCESSION   KCOD01001927
VERSION     KCOD01001927.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 629)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 629)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..629
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="214584pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>629
                     /note="ultra-conserved element locus uce-6"
BASE COUNT          204 a          106 c          101 g          218 t
ORIGIN      
        1 aagtttcaat atctttcaat tattaggcag attttaaggc tcttctaagt ggtacagtag
       61 tagcaaatgc cagctgatat tttagagaaa tattaaaaat accatttgat tgtaagaacc
      121 tccagaaaca tatcttcatt tttggtagtt tagtccacag taacaaaaac cacattgtac
      181 caatcagata tttaatgagc ctctaactcc atttctacct tatcccaaag gtatagcaaa
      241 tagtgctgct tttttaaaat atcaagaaaa catcatttgc tctaaaatgt ccctaaaagc
      301 aggtctaaat tgccaataaa ggctaggtaa ttgtatcagc atggatcaga aagcatttct
      361 cagaactgat gaaatagttt gcggtattgc agaacctgaa tgatgctctc tgtacattac
      421 actggaaata tcaaagactg ctctcagttt aatttgctca ctagtgtgta ttttggattc
      481 tcaggaaata tttcttgcta atgtcattct gtttttcttc aaatgtaatt tgtttgggtc
      541 agacaatttc tgccatggag ggttcacttg ggttttcaat taagaatact atttttaaga
      601 aaattgcatg ttttaaaatt ctcaaatcc
//
LOCUS       KCOD01001928             457 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 214692pyr ultra-conserved element
            locus uce-2593, sequence.
ACCESSION   KCOD01001928
VERSION     KCOD01001928.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 457)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 457)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="214692pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>457
                     /note="ultra-conserved element locus uce-2593"
BASE COUNT          108 a           99 c          129 g          121 t
ORIGIN      
        1 acgagggaat gctttgagcc aaacttccca gagggaagga ctgccaccac tccctccttg
       61 cgctcttcct ggggttcaga ttgccggcta atggggcgga gctactgcta gaactctcca
      121 ttaatggagc agaatataaa cagaataaag ccttcatttc ccgggctgtg atttcattat
      181 taatatactt tacagttcac aggttgttca tttgcttcca tgttttctca gctggtgtaa
      241 tctgctgcgc ggagtgagaa gagtcataaa atttccattt ccagttgaat gtgcgtccaa
      301 ttcgccgtga aatgtttctc tccgtcgtga atattaagtt cctgaggagt cggtagcccg
      361 caggttgcca gctctctgtg tcccaggggt gcgggagaga agcgggtgtg acaaggagaa
      421 gtgagggact gagggaagga ccatgtggca gagggag
//
LOCUS       KCOD01001929             571 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 214802pyr ultra-conserved element
            locus uce-4839, sequence.
ACCESSION   KCOD01001929
VERSION     KCOD01001929.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 571)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 571)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="214802pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>571
                     /note="ultra-conserved element locus uce-4839"
BASE COUNT          185 a           87 c          119 g          180 t
ORIGIN      
        1 aaattaatcc taggttattg tgcaatgagg tgcaatttgt tcatttatat gaaccttatg
       61 tggattgaaa aaaatcaaga taaatcttca tgcacagcat acaatcagat tacccctgga
      121 ctatatattt acgttgggtc tgatagcaat caatggttta gcttcattgc atttcaagat
      181 gtatttgcac ccagtgtcca gtgatagtgt cctcaccctg gaaataattt agttgcaaat
      241 tgactggaag atggtgaaaa ttgaaagtta aaattagaaa tactcataat aaacagcaga
      301 aaaaaggtca gatgatgccg cactatgatg agattggaat ggttggtaaa tgaggttttg
      361 tgtttgtcgt gagatgtatg tgacatgcct acccaatgct cttgtaatat ccagcctagc
      421 agaagagatt atctggcaaa ttgacgctgg aaagaatttt ctgatggact gggaaattag
      481 aattgcactc ttttctttga tgtgtgcaag actgggccgc attacacagc tagctcaggc
      541 ataatattaa atatagtatt taatacttaa t
//
LOCUS       KCOD01001930             418 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 215012pyr ultra-conserved element
            locus uce-4833, sequence.
ACCESSION   KCOD01001930
VERSION     KCOD01001930.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 418)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 418)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..418
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="215012pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>418
                     /note="ultra-conserved element locus uce-4833"
BASE COUNT          156 a           60 c           68 g          134 t
ORIGIN      
        1 agaaattgca gatttactta tgataaatta ctgaaacagt tttgcataaa actgtaaatt
       61 aaacttaaaa gtgtgaagaa atcatatcgt caatttagat acacttttat ctcttcagaa
      121 agattaaaaa tgtaacacct taggtttagc actgtgaagt ttgacaagca ttgaaacaaa
      181 aaaggaagtg taaattttac taatcaaaac atctgtacta tgcagccatt tacattttcc
      241 tatcaagaca tgagagaaat gttaatttta gacgactctt tttatgacct ataattactg
      301 tcattaagaa agctctggag acgtacaggg agctttgact gaaatacagt ttgacatgtt
      361 ctataattaa tgctgaatta acgtgctaca gtatgtgcct cagaagaaaa aggtttct
//
LOCUS       KCOD01001931             611 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 215115pyr ultra-conserved element
            locus uce-497, sequence.
ACCESSION   KCOD01001931
VERSION     KCOD01001931.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 611)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 611)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..611
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="215115pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>611
                     /note="ultra-conserved element locus uce-497"
BASE COUNT          221 a          102 c          106 g          182 t
ORIGIN      
        1 caccacaatc catctacaac cagccaaacc caacagtagt tcattcttgc acaatccatg
       61 agttggggca gaactccctt caacttacat taagatacct acttagctct ggcgggcagg
      121 gaatggggaa ttacacctca tttctgatca ctaatgtgtg atgaagagca tcaggagaat
      181 tatatgaaaa cgaatataaa gaaatgattc tgattttgaa gtacattaag tttggaaaca
      241 ctaacaaaaa catcaaaatg atacaggtat atttgcttat actaaattct tgatgggaaa
      301 gttctcaaga acaagccatt tgtttcctgc tacagaaggg gggtactttt tttttgaaga
      361 tcaaagcgtt ttttttttgt ttttcacaga atttcatatt tgctaatatg aaggcataaa
      421 acagcaacag agaacaataa tgcatacagc aatgagtaca ccagggtaac gttgatattc
      481 aaaacggcta gataattttt tttttaaagt tttagaataa atgcaacaga ggtcaataat
      541 cacaaaattt taaggttaga gcaagatcag tcaatgacta aacatagtta acatctttta
      601 taggactatt a
//
LOCUS       KCOD01001932             661 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 215223pyr ultra-conserved element
            locus uce-3330, sequence.
ACCESSION   KCOD01001932
VERSION     KCOD01001932.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 661)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 661)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..661
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="215223pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>661
                     /note="ultra-conserved element locus uce-3330"
BASE COUNT          232 a          118 c          102 g          209 t
ORIGIN      
        1 tacatgtgag actgctttta ctactaaaga aattcatact tacactaaat gattatccac
       61 attcacagtg catgtttttg catgatctac ctaattctta gccactttat ttatggactt
      121 taactggtga aataaatgat tcaaaaaaag tatcagctta gaaaactgac aaatatgcag
      181 caaaagatta tggaaacatg cagtggtctt gctaaaatta acaacagtaa atagaaaaaa
      241 tgtaactgat gtattaccag tttgtgccat aaatttagca gcatcagctt gttcctgagg
      301 gacccttttc tcatgaacag atcgaggtcg ctgactttta attgtatgat ctcccatcat
      361 tccaaattct aaagacagaa taaaggttta tgaaagcttg tgtgtagaca tttctcaaaa
      421 gtcacatact gtctcatgca atatgttcct aaacatacct ggaagttgct tgcaagagtc
      481 aggcaagtga tcatggcagt taacatcaac ttaactttgc tacactcaac tttcaatgaa
      541 tacttaaatt tatgtctgca gattttccaa tatgatttta ttttatgaac caacattcaa
      601 tagtgacaca tactataaat cagctgtatg acatgggaca aaaacaatta ttcaaatgca
      661 g
//
LOCUS       KCOD01001933             760 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 215332pyr ultra-conserved element
            locus uce-3436, sequence.
ACCESSION   KCOD01001933
VERSION     KCOD01001933.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 760)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 760)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..760
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="215332pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>760
                     /note="ultra-conserved element locus uce-3436"
BASE COUNT          232 a          129 c          159 g          240 t
ORIGIN      
        1 tctgtgggtt attaagagca gctcgtctgc ttagatctgt tagaaaaaga ccataagggt
       61 tgctgcaatg agataaagat ggattggcca cttttaagtc atatttcctt tcttgtgtaa
      121 attcagctat gacttttatc attacttttg gagagtcatc agggaagatg ttgttttttg
      181 gtttgcattg ataccaatat agtgactctg ggatgctttg ggaatatcat gtcaccatat
      241 ttgagtatgg gcactggaca atagcaagta ccaataactg gcctgtttga tcttctgcag
      301 ttctcagtct ttctaacagc aataatcagg cagaaggatg aaaagactga ttttcaggga
      361 attagcatga taagcaagaa cacaaaatca atcccaatcc ttgtgaggcc gcctctgatt
      421 gctttgaact gtcaaaaaat ggcagaatca aatcgaaagt gcttgaggtt acgggagtga
      481 tttgttcaag aagagatcgc tagagcaatt gacacagctc ttgagacaat aattgggtta
      541 tcaaagagaa aacagttcaa gtaccacagg ggtgaaggct tatttgcatt ggattttcat
      601 acagccaggc acacctcgat ttgaaagcct ccatttttat atacttgaag attaaaagga
      661 ctcaaaattg catcattatc atttggaact ttggttctta gcacattact ttttatttaa
      721 ccagcaaaac tttgaaaccc tgttttttat gaagtacgtt
//
LOCUS       KCOD01001934             654 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 215445pyr ultra-conserved element
            locus uce-3547, sequence.
ACCESSION   KCOD01001934
VERSION     KCOD01001934.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 654)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="215445pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>654
                     /note="ultra-conserved element locus uce-3547"
BASE COUNT          211 a          137 c          123 g          183 t
ORIGIN      
        1 ggttttccaa acaccaggtt gaaaacaaac tcccatcaaa actgagtggc tctgccaagt
       61 tcaaaaggtg aaataaatga atctttacac attataagaa caaaatcaac attcttctgt
      121 ggcataaagt gcctgaaaaa ctagcaagta aaagcaggtg tgatgtgctc cctgtcagct
      181 aacgacactg ataagcttgc catgcctggt tctgcttcat ttcaaacaga ctgctgaaaa
      241 aaagggggaa aagccagagc agaaataatt gctggcgctt cgagttagct gagagagcct
      301 gcaggctaag atcaacgcga ctgatttcat cctcttcctt ttatttctat aaccttaaac
      361 gttctgctat tataaaagtc atcatgtcag ctttccccca agccttagca gcggcctatt
      421 ttaaaattgt atcaattggt aaagctcctg gctggagtat tttcatcttg atttatggtt
      481 tttgagcttt aaagatgaag aaaactccac tgacctgatc tgagtgtgca tgtgcattgt
      541 cccacgcata tgtttataat cagaccctac agaaacaacg cataaagcct taaaattacg
      601 aaagaagcaa attgcaagtg aacactgttt atcctgtatt tgtctccaag aaaa
//
LOCUS       KCOD01001935             293 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 215548pyr ultra-conserved element
            locus uce-6235, sequence.
ACCESSION   KCOD01001935
VERSION     KCOD01001935.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 293)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 293)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..293
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="215548pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>293
                     /note="ultra-conserved element locus uce-6235"
BASE COUNT           73 a           70 c           68 g           82 t
ORIGIN      
        1 ggtggtgggt cagtgccagg acaggtcctg ccaaaagcat ttgggtgcag tcctgggtat
       61 ctcttgttct cctcctaaca tttttttctc ccatttcatt tctacaggcg agtttatacc
      121 gaggtggcta cagccgattt gccccctact gaagtgacgt gagccccctg caaatgggac
      181 agccccccca gttcatgagg cctggctatt gcaatattta ctagtagagg aactctatag
      241 caagttgagg aggaaaaaca aaagagaaaa tactttttta tacctcacta tgt
//
LOCUS       KCOD01001936             491 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 215656pyr ultra-conserved element
            locus uce-5287, sequence.
ACCESSION   KCOD01001936
VERSION     KCOD01001936.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 491)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 491)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="215656pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>491
                     /note="ultra-conserved element locus uce-5287"
BASE COUNT          152 a           93 c           89 g          157 t
ORIGIN      
        1 ttagcttctc tctcccctct cagaaaacaa accacaaaaa gaaatgtttt acacagaatt
       61 tatacatgat aagaaattca ttccacaagt ggagtaagac ctttaaaaga cctttatcta
      121 cctcacagaa caaatctgat atgccttaca aaccattatg cgatctcttc ctctcattgc
      181 atgcagatgc aactcaagtg ctaacactgt aatttccatt ccaatgatga aattgggtgt
      241 gggtagggac aagtttattc taatgcactt gtatatgatt acatactgga ttgtaaaaat
      301 ttaacatttt tagcttcttc taataagctt ttcaaagcgt aataaatctg agtatcttaa
      361 aacatctgtt tgctctggaa gatcagtcag ttgggttggg catcctgctg gtggggctgc
      421 tgagactgtt tgaagagcct ggttgatacg tgcagtgtgt attacaagag agctattctt
      481 cagaaaactt t
//
LOCUS       KCOD01001937             427 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 215765pyr ultra-conserved element
            locus uce-1234, sequence.
ACCESSION   KCOD01001937
VERSION     KCOD01001937.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 427)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 427)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..427
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="215765pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>427
                     /note="ultra-conserved element locus uce-1234"
BASE COUNT          147 a           73 c           68 g          139 t
ORIGIN      
        1 tccaccagtg cctgtgttct tgttgagtag taatgagata ccataataaa cagcagaaga
       61 tgtatgtcag atggttctcc aataacatta gcagctgatg tatgggatat tgaaggcaga
      121 ttaagttgtt aatgtatatt agtatattct taatttcctt ttaattgaaa aagacatatt
      181 gactttaatt aaaaccattt cacaggaact gtcaattagc acatgtcaaa ctagttaatt
      241 cagaacagaa ttcttttaat taagggctgc tttcctttaa ctgccaggcc aatgaaatca
      301 gcctttcctt atcaagactt taaatgtctc aaagaaatac aatacaaatc tctaaaaact
      361 cttatctatt attagaagcc catatggata acattaaaat gatggcgctg gcattgttca
      421 tgccaca
//
LOCUS       KCOD01001938             539 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 215871pyr ultra-conserved element
            locus uce-5116, sequence.
ACCESSION   KCOD01001938
VERSION     KCOD01001938.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 539)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 539)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..539
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="215871pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>539
                     /note="ultra-conserved element locus uce-5116"
BASE COUNT          178 a          107 c          122 g          132 t
ORIGIN      
        1 ttccctgaag attatagaaa aaagcaaaaa atgtgagcac tcctaaagac tctacaaata
       61 aattgaagtc ccaccgctgt acatgtgaag cagaagcaaa tcacatatag acaaatttca
      121 ggcaaaagtt tgtaataact tgttagtgaa atagcaagtg agcagtaaaa tctttggaca
      181 taaatggagc tccaaagtga gtctcagcct tcagtagcca aaaataaacc agttcttggc
      241 tgaaagacat aagtgttatt gtgaaattga tatccctcct tggcttattc ccagacaata
      301 tgttgccttt ctgggggctg atcaatgtga ttgatgtgat gtgtgaaatc caggagggag
      361 ctccccttta atcaaaccca ctgtcctcca ctgataggca gctgtggact aacatgttct
      421 tctgccttgc tctctctggc tcccctcaga aattagtaca ggcaaatgaa gaaggacgag
      481 aggggagaga aaaacgaact gcagcatagg acatgagagg gcagcaatcg agcggtgga
//
LOCUS       KCOD01001939             511 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 215982pyr ultra-conserved element
            locus uce-4970, sequence.
ACCESSION   KCOD01001939
VERSION     KCOD01001939.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 511)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 511)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..511
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="215982pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>511
                     /note="ultra-conserved element locus uce-4970"
BASE COUNT          172 a           83 c           89 g          167 t
ORIGIN      
        1 tattcctgtg cacttctaaa acagagaaaa taagcagaaa ggtgaataaa tatgaaggtt
       61 agaattaagg gtagggtttt atgtcattta tacaacggtc accatatctt tttacccagc
      121 aagactgctt agataaggga atattgtttg gcactagctc cagtgttatt tgtgataatg
      181 aacacaaacc ccatctgtaa tgacaacatg atgtgtcttt ctgtagaatt tctttcctac
      241 atttgaatca aacattgatg aaagctctgc tgccagcagc tgttcagaga caatttaatt
      301 ccagctgtga taattcaccg tgtcagacat tggctgttat atgttgatac aacagttctc
      361 cagatttgca tttttatcaa aaggaacaaa tgttttgaac atttcagtac agatggcatt
      421 taaccatgca cacaagttat aaatatttga aaagttaata acttattggt aagataaatc
      481 tcaaaagtgt tataacatct tttggtcata a
//
LOCUS       KCOD01001940             584 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 216093pyr ultra-conserved element
            locus uce-4500, sequence.
ACCESSION   KCOD01001940
VERSION     KCOD01001940.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 584)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="216093pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>584
                     /note="ultra-conserved element locus uce-4500"
BASE COUNT          186 a           92 c          107 g          199 t
ORIGIN      
        1 gtgcagttgt tgttatgaaa agatatcctt gctgagttaa aatcagattg tcactgattt
       61 aaaattccga tattgctgtc catcacacta aaacgtgata atggtccctg taaagttggt
      121 aatcctagtg cttatgcagt gttatgtagc catgctcctg accagcgtaa gcacggaaat
      181 ttggttatta tgtagaagag ttataataag aaatatgact gcaaaagcaa agcagtcagt
      241 tgaaattggt ctataattaa atgcttagaa aattctgtgc ttagctcatt ttaaaatcaa
      301 gtgcttcttt gtagcaattt cctttcttta attacaattt cctgtctagt ttgacattta
      361 caatgcaatc ttgggggaca tgtttgtgat ttattattct tgctcctatc aggatatcac
      421 tcggcagaaa tgagtttata aaataagagc tcaaattatt atggcctttg accaataaag
      481 ctggctcata atttcaggcc tgagaaaaga ttaacatttt tgacaatcaa atgcagaatt
      541 accaatgggg gacaattttg aaaactgttt caattttctg aaac
//
LOCUS       KCOD01001941             846 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 216205pyr ultra-conserved element
            locus uce-1110, sequence.
ACCESSION   KCOD01001941
VERSION     KCOD01001941.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 846)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 846)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..846
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="216205pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>846
                     /note="ultra-conserved element locus uce-1110"
BASE COUNT          297 a          147 c          138 g          264 t
ORIGIN      
        1 ttgctcaaca atataaataa ttccaagtcc tttctgacat aaagtagtat atttaaagta
       61 aggtgtctta gtgagatttt cactttaaat agaataaggg ttaaatgata acttgactta
      121 tcttttaaat gacaaaaaat aaagaaattg caagaccttt tcacacatta gatatgtatt
      181 gtcatttatc atctagatat caggctagca gtgcgaagta ataaaacata tcatcgaaaa
      241 atgtgctata ggtctgaatc actctttcat tccacctccc agctaactgt agtattaaat
      301 caaacaagca gaacatttcc ttaggcagcc attgcctttt aatttcctga agaaccttaa
      361 aatatcattc attacaagta ctacacatat ttggttttta aaagtctcat aaatcaatag
      421 caggctgact gtaataatta ttacaagtta gtgcataatt ttcgtgctga aggctgcatg
      481 cagaacttta gcatatgcaa acgaggcaat tcaaactgtg tatagatatt aatatgaaga
      541 agcaggtaac gaggtgcagg ctatgaatta tgcatcaaga gcggctgatc ttcaatgagg
      601 aaaatgaatt cagcatgtaa tctaattagt gatggaagtc tattacatct aactgcaaaa
      661 gcaaccgtcc ttgaaacaaa tttatttaca gtccatgtta ccacttgaaa caactttgaa
      721 atgatgtgta agacaacagc ttaattgtaa aaattttttt gtctgtttgt ttcagttcta
      781 gacctggaag gcctcctaag aggactcaaa gtgtcacctc cccagagaat tctcatatca
      841 tgccac
//
LOCUS       KCOD01001942             580 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 216318pyr ultra-conserved element
            locus uce-3596, sequence.
ACCESSION   KCOD01001942
VERSION     KCOD01001942.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 580)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 580)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..580
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="216318pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>580
                     /note="ultra-conserved element locus uce-3596"
BASE COUNT          174 a          115 c          124 g          167 t
ORIGIN      
        1 ctgtctgagt gctcacattt tgtgttgtaa aatcacacag cgtgtatcct gacaccaccc
       61 ccagcagcaa caacagaaaa accctgggac tcacagaaaa tgtatctgtg ggaccgaaag
      121 atatctcagg atcccaggat cctgctttct gcggtcccag gttgcattcc ctagttaagc
      181 accatcaata tcaatactta atggtattct ctaagctcag gcagtgaaga aaatagggtt
      241 gttatctatc aaagcacatt ttagtttttg acaagtaaaa agcagcatgg ggaatgcagt
      301 aagtctgaaa tgaaagccta aaagaaaact catataacat ctggtgtcat ttatcccctg
      361 ttggccttcc atagtgtgat atgatgagct tgttctgatt taagatcaga tgatttggtt
      421 tgaaagaggg gagtggggga tgcaggcagt ctggcagcaa attgggatac aaaatctgct
      481 caaataattg gaaacacgac agattttcct taactgatgc cagtggcatc ttagtttatc
      541 catctctctc agctgaattt gttaagtgca ttatcttatt
//
LOCUS       KCOD01001943             606 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 216426pyr ultra-conserved element
            locus uce-1040, sequence.
ACCESSION   KCOD01001943
VERSION     KCOD01001943.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 606)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 606)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..606
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="216426pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>606
                     /note="ultra-conserved element locus uce-1040"
BASE COUNT          178 a          117 c          140 g          171 t
ORIGIN      
        1 ttattgatta ttgaaaatgt tacatcccgg ggaggaaaat gtcattgctt taaataccag
       61 cattaacagt agggcaccca ggcgtttaaa caatggagat ggtgaaatac atggaatttt
      121 agagtcattt gtgtgttgat tcgactgagc aggagcttag caagcacgtc tcacactgga
      181 cttttttact ggaacggtga aatatataat gaaatccaac aaggaaactg gaaaaacagc
      241 caaattggtg cagcaaagtg gttaatagga tcattagcct cctcgctgta tttttttgga
      301 cattgtgtgc ctgtaccgta gtcctcgaga gcagattgca ggaacaggct gacagttacc
      361 cgctaactca gcagtgctgg gtgcaaactg ccatcttcct gtggatttac agctgccact
      421 tctgctactt caattagttc tatagcacac agatgttgct taaatgttgc tgctaatgat
      481 actgcaataa gcgtaagatt catgccatat tttgaggcac gtaaatttct caagtggcac
      541 aattaaagtg gaaatattag gtggggagaa cttggcagtc tctccaactt ggaaagcgca
      601 cccgct
//
LOCUS       KCOD01001944             555 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 216532pyr ultra-conserved element
            locus uce-300, sequence.
ACCESSION   KCOD01001944
VERSION     KCOD01001944.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 555)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 555)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..555
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="216532pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>555
                     /note="ultra-conserved element locus uce-300"
BASE COUNT          179 a          113 c          102 g          161 t
ORIGIN      
        1 atgatctgaa agttagctgg aattcggaga caaataccaa acatatatct atatacctat
       61 taaaaaagaa gaaaaaaaat gcaatgaaaa tttatgacct taacattcct tcagggtcaa
      121 gcaatttatc aaattctctc actttctggt ttcaattaca cagctattgt ggaaggaact
      181 tattttagca ggttcatttg cctcagtagg gaatacagga ctttggccta atgcttcacc
      241 tttagtgcag gccatttgag ccttagaaca aataccaatc atcactcttt ggaaaaaaaa
      301 aaaaaaaaaa aatctgcatc ggtatggcct attggaatgg ggtttctgtc aaggtaaacg
      361 gttgtcggca atgactgtgg tagagtggcg ataaatccca ttttattgct gaaaaattcc
      421 agcttctctc catgcctgac agctccccac attctcgtac ccatttgggc aatttctgta
      481 ctatgtccat ctggttctta ttacctctca acctgccagt gtctgatcca gcaggtcaaa
      541 aacaggggaa agaaa
//
LOCUS       KCOD01001945             747 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 216639pyr ultra-conserved element
            locus uce-2248, sequence.
ACCESSION   KCOD01001945
VERSION     KCOD01001945.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 747)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 747)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..747
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="216639pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>747
                     /note="ultra-conserved element locus uce-2248"
BASE COUNT          247 a          115 c          150 g          235 t
ORIGIN      
        1 ttttcataag ttggacttcc ttccaggcta attaaccact aaacatttta caagcaatcc
       61 aagtgcggaa gcagtaaaag atgaattgca cttatgaagt aattgacaaa gggtatattg
      121 ggccttttaa gcaatgatat ttgcatctta atacaggaag aaaggaaccc tggtactgca
      181 gggtcattag ttaattctca gaactctgca caagataata atggctcaag gctagaatga
      241 gcctgcctgg attagggtgg agaaccctac cagagaaaac actaaatgtt tgtgtcttgg
      301 tattatctgt gttatcttag attaattccc tggctatttt cttttctttt gacagcaaag
      361 tcagagctga caaaccaagg cagttctcaa ggaaattcaa ttactgaaat gtctgacagc
      421 ttgctttgct gcttctaact aaagttttga aagttacatg ctgcatgtat aatatggttt
      481 tcactacaaa ggaatagatt tgcattttct agggggaaaa tcattttcaa gctgtaggag
      541 tttaatgata aaagataaaa aatgaaatgc tgaagtttgt attttgcaaa gaaatgaagt
      601 gagttgagtg gctgccacat gaaactagga aaatactgtg ttttcttaga attcacttta
      661 aatgagggaa tgccagtcta tctgaataat acctgcatat ataattttct aattagtcca
      721 tgtgaagcaa gatgcaaatg tttatag
//
LOCUS       KCOD01001946             627 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 216749pyr ultra-conserved element
            locus uce-7950, sequence.
ACCESSION   KCOD01001946
VERSION     KCOD01001946.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 627)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 627)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..627
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="216749pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>627
                     /note="ultra-conserved element locus uce-7950"
BASE COUNT          182 a           91 c          120 g          234 t
ORIGIN      
        1 tgctgttttc cataaatgat tgtgctttca gaggggaact gatatagtta tactgcagtt
       61 tgattgtgaa tatggaattt taaagcattt ttgcagctta atagtgcagt tgaaaaagaa
      121 taaatgctag ttttgttgtt gcatgattgt tataaagttg aaaagttaaa agaagagatt
      181 gtatttgttt gctttttttt ttttctccaa aagccttttg taaccatttt atgtattctg
      241 ttttataaca agtggataga ctttacagtt atgtgctgtg cggcctgtca atcagttcag
      301 tctgacagct gtcaatcact gacacgcaaa tattatggga ttccctagtg aggaaagcat
      361 tggtatctct gtgtggtgac tttagcctcc cgcagttccg gtactttaca tttttttagt
      421 ttttttcctt gtgaagtgat gagagttgta cctgcaatgt gttaactgcc aaaaaaaact
      481 tctaaataca cctgaaatgt tttcagcctt attttccttt gattttgaaa gtgcttaaaa
      541 cataaaagaa aatttaacct gaagctttct cagtctgaaa atcattactt agggagaatc
      601 aactttacag aaatctttaa ggtaagg
//
LOCUS       KCOD01001947             643 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 216968pyr ultra-conserved element
            locus uce-5208, sequence.
ACCESSION   KCOD01001947
VERSION     KCOD01001947.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 643)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 643)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="216968pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>643
                     /note="ultra-conserved element locus uce-5208"
BASE COUNT          224 a           93 c          116 g          210 t
ORIGIN      
        1 cattgaagtt caagaatttg tgtcattatg aaaaatgagt tatagtgaca tattagaggt
       61 gcattttccc attgttttaa aggagaggag gcacctgagt cttatttaat gtttatttag
      121 atctaaaaat atattactag acttatctta ttgttttcaa cattacaaag ttacataaga
      181 gaatcccctt gtacttaaag aaaaatgcaa ttattttcca ttctgaatct tcagactgct
      241 gttttagaaa atcatatctg attatttgct cagcagaaga ttattgagtt gatttagctg
      301 tgattttact taacaaagct tcaactgaat tcctactgtg gagtccaaaa aaggtagaga
      361 gatataaatg atacattcaa actgtgattt ttgtgaacag ggccatcaat gcacccctcg
      421 gagctaatag cggagatgag aaacagtggg tttgcactga aacaaaatgt actggggaga
      481 aacttgaccg caaatgatcc atcacaggta atttttacca gtaagctgaa aatgtctata
      541 aatctaaatg tgattgcttg tgaattgtta cttaatgttt tcaaatatgc atatccatag
      601 gaaagctgaa tagttatacc agtagaaaaa tgtcaaaaaa ctt
//
LOCUS       KCOD01001948             444 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 217081pyr ultra-conserved element
            locus uce-6734, sequence.
ACCESSION   KCOD01001948
VERSION     KCOD01001948.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 444)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 444)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="217081pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>444
                     /note="ultra-conserved element locus uce-6734"
BASE COUNT           89 a          103 c          107 g          145 t
ORIGIN      
        1 gggtgtgaag ccccggcccc tcctccgcag ccccgggctc gcccgccctg ctcgggagtg
       61 tggtccctgc cgggagccgc cgcgcctggc gcacagaggg aagcgttgat gcatcgctgt
      121 ggaaattcat tgtgtgactt tctgggtatt tactgagttt cagaccgaga tgcagctctt
      181 gaaagcttta tgggcactag caggagcagc gatctgctgt tttcttatat ttgtcatcca
      241 ctcacagttt cttaaagaag gtaattgtat gtgcatgtct acatatcctg ttctttaata
      301 ctaagatctt tacgaggtgc cttaattatt tttactgttt ccagtatgtt ctatttacag
      361 cagtgcttcc acgctatttt taaagccttc tcattttgtt gctttagata ataggtaggc
      421 ttagacttac gtctttggta aatg
//
LOCUS       KCOD01001949             285 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 217191pyr ultra-conserved element
            locus uce-4030, sequence.
ACCESSION   KCOD01001949
VERSION     KCOD01001949.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 285)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 285)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..285
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="217191pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>285
                     /note="ultra-conserved element locus uce-4030"
BASE COUNT           92 a           64 c           53 g           76 t
ORIGIN      
        1 aaaaagtgac ccaacagggt ccaggtcaca ggcatctgcc aacttaccca cctaaatgat
       61 aaatttacac actggttgaa agcaaatctg ttgttgctgg ctgggatctg ttgttaatag
      121 gtatgacaaa gcagtaatag catcccagca ttttttgtat ttccacttca aacagcaaat
      181 ccgactgaat ttacctaata cttcaataat ccaattataa cactttacca gcagaaatca
      241 tcggcgcata agcctcgcag tcagttaaat gagggctgtg tcgag
//
LOCUS       KCOD01001950             724 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 217297pyr ultra-conserved element
            locus uce-7785, sequence.
ACCESSION   KCOD01001950
VERSION     KCOD01001950.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 724)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 724)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..724
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="217297pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>724
                     /note="ultra-conserved element locus uce-7785"
BASE COUNT          203 a          158 c          115 g          248 t
ORIGIN      
        1 caccagatct tttgcatttt gcatgatgct gttgctggaa aacattcttt tgttaatgta
       61 acctcagtgc tgaagccctc agttttcctg tagctcaggc aacaaaccca gaacacacac
      121 tgatttacca tggttctaat cagcatttcg cacatggaaa actcaccatg tgtttcagaa
      181 ccctttgaca ctcatctctt tctaatacaa gtgcctgttt ctccctctgc tggtttcaga
      241 ataaacgcct tgtcaaaaaa agaattagat tttgacagct tttttcctat ggttaattga
      301 ggtgatagat acacttgaca tttatctcag cgcagaaaag aagattaaga catatttttc
      361 tctgtgcatt ctctgtattg gaggtcactt tccagggtct ttttaatatg cctgtgcaat
      421 taatagtggt gataattcca ctccatatca caacctcttt aaagttctct ttcagactga
      481 cagataaaac tctctcttct gtacacagga cttgaattag actaatcttt ttcaagtttg
      541 ccctgcaggc cttcctcaca gtcctgaaaa ttaatactgt ctgaaaaata caaaggatat
      601 cgtgacttag ttcaaagaaa atatcatatt tcagtttttt aattattccc actaaatttt
      661 tgagggcgtc cccttaaact gctacttttg aatgcgattt gaacgttcca cttgctaagt
      721 gtcc
//
LOCUS       KCOD01001951             724 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 217409pyr ultra-conserved element
            locus uce-2270, sequence.
ACCESSION   KCOD01001951
VERSION     KCOD01001951.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 724)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 724)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..724
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="217409pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>724
                     /note="ultra-conserved element locus uce-2270"
BASE COUNT          207 a          163 c          199 g          155 t
ORIGIN      
        1 gaggacccag tgaagtctca gcaaagcact gcggctggaa aaggcagagc tctttttcct
       61 gaaaggcatc aagcaaggca attaaccttt ttccccagaa acatgggaaa tagagggaat
      121 tgctcccttg ttcatgaggt attagctgac tttggtaaag cagcttctag tcccgttgct
      181 gttctcatgg gaagaagaga tccatggcag cagtgaaatt gaaattaaag aaaagaaaat
      241 acttacatgg cacagacagg catgtacatg ggacacacac accgtgcatt tacctaatga
      301 tccatgagaa gctgatgtcc ccaggaacgt gttttctgac tggcttaagt gtccctgggg
      361 ctgatggagg aaatgcgatg agaggctgac cggtggagaa ggagaggcgg agtgaaagga
      421 ggcagagctt ccaagggacc cggggatatt tacaggagca gaactttgca gcaaactccc
      481 acctggacaa agaacacaca gagaggatgg ctatgtatga ccacgaggcg tgggcacagt
      541 gcagagcagg aggtgttagg ttccctttct cctccctgag cccctcggga ttccctccac
      601 ttctcctgag gttaagagga gcactgaagc tgccatccca tgacccacat aggttaagac
      661 cctccacaat tcagtggatt gctctttgag tggccaaagg aacaaaaggt tttctgagca
      721 gagc
//
LOCUS       KCOD01001952             502 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 217621pyr ultra-conserved element
            locus uce-1782, sequence.
ACCESSION   KCOD01001952
VERSION     KCOD01001952.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 502)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 502)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..502
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="217621pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>502
                     /note="ultra-conserved element locus uce-1782"
BASE COUNT          161 a          102 c           87 g          152 t
ORIGIN      
        1 aaaaaagttg aaaattaatc caaagctaaa tcagtgacat gactgtattc ccattacatt
       61 ccacttaaat gcatatgttt acgatatcct taattattat taaacatagt aaaatacttc
      121 caaacttggc tcatggcatc gttgtacttc tagtggttat ctgaagccct gtcaatatgc
      181 cacttcctcc tcccccatct tttaacagaa gcagcctcca gtgaaataat ccaagctgtg
      241 ttcaagaagt tggcaagtgg gtccaattaa atgtggtttt agtgtattct ggcatttgca
      301 tatctagttt gccaagaagt aatgttttag aaaaaacccc tgcactggtc cagacagaga
      361 gtggatggtg tgatgcatca atgaaccttg tcccacgaat cccagtggtt taaataaata
      421 aataaagtct catctattgc ccctttttgg ctaacaggct ttacaataat ctgaatgtcc
      481 tgtaaaagaa aacacacaga gg
//
LOCUS       KCOD01001953             608 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 217732pyr ultra-conserved element
            locus uce-6485, sequence.
ACCESSION   KCOD01001953
VERSION     KCOD01001953.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 608)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 608)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..608
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="217732pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>608
                     /note="ultra-conserved element locus uce-6485"
BASE COUNT          190 a          119 c           84 g          215 t
ORIGIN      
        1 tctaagtgaa ttatgattta ctggataaca gatacagaaa gatttcacta ccactacccg
       61 taaaactgca ttggtttttt atcaagtagc tcctgtttag cccatctagt tgatgaacat
      121 tcttctcaac tagcaaatat aaatgactta tggggataat atttcaatat ataatgacat
      181 tgctatacct cggattcttt taggatctgg gttattaaat attaaatatc aaagctgtaa
      241 attattgtag cagctttata caactaaatt aaattcaaac aaaacctaat ttccttaatc
      301 atagactgta atcctccagg aacatatgct attaactcag ctacaaatgg cacagaaatt
      361 gtatgacttc aagttatttt atatcaaatt ctaatccagg gcagagtctt cagtaaatct
      421 cctgcaggga ttttaatgct tctgcaatca tattggctct ttactagaga gctaatcttt
      481 ttatactcgt cactccttta tccatttcct tcacaccctt actgagctat agctagtacc
      541 ttctatcaca tatcatgttt tgaaagattt ggcttttccc tcttgcattt gatccgcaat
      601 agttaggc
//
LOCUS       KCOD01001954             571 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 217839pyr ultra-conserved element
            locus uce-7682, sequence.
ACCESSION   KCOD01001954
VERSION     KCOD01001954.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 571)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 571)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="217839pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>571
                     /note="ultra-conserved element locus uce-7682"
BASE COUNT          190 a           88 c          104 g          189 t
ORIGIN      
        1 ataattaagc ctgggcaact aagaacacat aattaaagag cttttaagca atgatttaac
       61 ttgtgctaaa cagcagtttc atttctttct gctctgggcc gatttgtcaa agtactatta
      121 agaattttta gttataaaaa tggagtgaac ctttattttt cctcctctaa tttattacgg
      181 ttgattacac agctggaatg ggaaggtagc tgctgtttgt agttaaataa ctcctcacaa
      241 tttcttaaag aaatgatctt caaagcttta atgggtcagt ggctcaagta caaaggaaag
      301 attgattttc atactcccac tctttgttcc caaagtttaa aacagacacg ttctggtaaa
      361 ttagtttgtc tatgttatta atggaagaac ttattaaact cccataaata catggtggta
      421 tcttacttaa aacacagaat gcatttgctt tgcatgttta aaagtaaaca ggggtgtaat
      481 attttcattt gatttcagaa atgcctcgaa aggctgaaag caggagaact cagaatatat
      541 taggtatgcg taatgatgaa tggcacaaag a
//
LOCUS       KCOD01001955             516 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 217949pyr ultra-conserved element
            locus uce-3354, sequence.
ACCESSION   KCOD01001955
VERSION     KCOD01001955.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 516)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 516)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="217949pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>516
                     /note="ultra-conserved element locus uce-3354"
BASE COUNT          181 a           94 c          110 g          131 t
ORIGIN      
        1 ttccaaggag aatttagtga cagcaattat tttaagccct tttatacagc caacaacatg
       61 aacacaggct cacatgagtg aaggtcactg aaagcagtca gtgtggacaa gcagacattt
      121 ctcgaaagta aattaaagag aaagaaacta ttttggttac ctttctcaca tttctttttg
      181 gaagctgacg aaggaggagg aatcataggt aatttcatca actcagcacg atttgactca
      241 ttcagtaggt agtgggactt ataggcatag gaactgaaca gggggtctga atggtcctgc
      301 actaccagcc ctatacgaaa caaacagaaa gagatgagtt gcaatgaaac tacccatgat
      361 tccatgaagg ataaacccaa tgaacacctc taatgcgtta tgtgggaatg aaagcttctg
      421 taacaaagag gttgtgctgg agagattcaa aaaaatcttg caatgaactt ctaagtggaa
      481 tttcaattgt tttacccttc aagcacaaga aaagca
//
LOCUS       KCOD01001956             574 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 218054pyr ultra-conserved element
            locus uce-6254, sequence.
ACCESSION   KCOD01001956
VERSION     KCOD01001956.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 574)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 574)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..574
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="218054pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>574
                     /note="ultra-conserved element locus uce-6254"
BASE COUNT          177 a          122 c          106 g          169 t
ORIGIN      
        1 ccccatggat attgcccaaa ttattctcca cgggaacaca attatggatt ttagatgcag
       61 aacttcatcc acagagaata taaaattttt gcacaatcaa aagaagatgt caattctcta
      121 ttagaaagaa acaattaaaa ctagataatg actatgaaca gctctgacct gctgagagcc
      181 tgaaggcttt gcttcactca ggactcttct gactgcaggt cagccctacg caaacaaagc
      241 cttaacagaa atgttacgga ggaaataata gccatttcca atgataatac acaattttag
      301 cacctacgct tggctgattt aggtggtcgg ctaacatgtc aaacagcctg ccttagttag
      361 gtgagccttt aatgggtaac tggcagactc tggcagcctt atttctgttt tagatttggt
      421 ttgtcattgg atatccatta cctgccattc atctttgatc tctttggaca ggcctgatca
      481 aaagatgtca tttgacctac tccacttggc agaaacttgt atgactctca taaagggggc
      541 accccagcta taaataaaat gacattatta tttt
//
LOCUS       KCOD01001957             256 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 218153pyr ultra-conserved element
            locus uce-3355, sequence.
ACCESSION   KCOD01001957
VERSION     KCOD01001957.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 256)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 256)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..256
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="218153pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>256
                     /note="ultra-conserved element locus uce-3355"
BASE COUNT           98 a           36 c           45 g           77 t
ORIGIN      
        1 tttttttttt tcatttcagg aaaatgaatg ttagagccag ataagaaact atagtctgct
       61 ttcaagaagg ttacaagaaa actgcatctt gcattactaa tcctttatct ttcatgttaa
      121 caaaaagatt actgacatat ttttgaatga aagaaaataa aatagcaaac gcatctaaag
      181 aactgtgtaa ctttcatgca acacacaaat cggttgttaa acggggggag gagaatgaag
      241 gggaaattca taatac
//
LOCUS       KCOD01001958             629 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 218260pyr ultra-conserved element
            locus uce-1614, sequence.
ACCESSION   KCOD01001958
VERSION     KCOD01001958.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 629)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 629)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..629
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="218260pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>629
                     /note="ultra-conserved element locus uce-1614"
BASE COUNT          196 a          143 c          105 g          185 t
ORIGIN      
        1 gaaacttcag taaatgttcc ctggggcaaa gctcacagaa tgtctcctgg tactaaacct
       61 tctgtgaatc aagcttttag atacttgcaa cgctctggca tcaagacgtt catacaactc
      121 tgaattattt attcatcaat ctttgtgcaa cttcccaaac accaatgcag accaagacaa
      181 tttcagctat ttgacgttac atcttctcaa gtggctaaag aggctataaa gcaccccatt
      241 gcttaagcct gccatctcag ttccattagc agtaaagacc tctctattca aactgctaag
      301 taaatcctcc gagagcccgg ggactgtttc atgcttgaaa gcaactgtta agaatttgac
      361 aacaaccaaa ctgttcctat ttaatccttc tcccaaggta aaaagaatta taggtaaaca
      421 tatgccttca ttatttgctt tgctgcattt caatactcaa tcccacacaa aattgccagc
      481 caaggattta atgcaatctc ttctgtattt cagagctatt gcctttacag aatgggctta
      541 ataagggctg tagagttggt gagcaaacaa ctctattttc tataacgcac actagagatt
      601 tgcagaggta actttaataa tgcaaggag
//
LOCUS       KCOD01001959             691 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 218371pyr ultra-conserved element
            locus uce-3882, sequence.
ACCESSION   KCOD01001959
VERSION     KCOD01001959.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 691)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 691)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..691
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="218371pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>691
                     /note="ultra-conserved element locus uce-3882"
BASE COUNT          198 a          128 c          172 g          193 t
ORIGIN      
        1 ggagccaaag gcatgatgac tttaggatat gaggcgtgtc atttaaaaca ctgtgtgtct
       61 ctgtcaagag gaaatattac actagggttt aaaccaggaa aggtcatagg ttatgtgttt
      121 tcagtgagct gtaactgatg gtctgatctg cttagaggta ggattaacct ccctctctct
      181 cagaaaggac ttgcagagaa ttgtttgctt gggtttctaa tcttatttta ccccaaatgc
      241 catgtgccct tattggtggc ttcttgtggt agtggaatca gtgaaaagct ggtagatcac
      301 acaagaagcc tctgaatgaa ggcagaattg aaactgggaa ataaagaaaa cagcaggcag
      361 gtcaccctct caggaaaaca acattcattc tcagtcatgc acatcctaac acttttgacg
      421 gcaatttatc atggaagact gggttcaccg caagggctaa cacatgtcat aggttaaatc
      481 agaaaaggca atgctgaaag gaaacttcaa agtccttaat acgatgtttg ttataaagat
      541 gagggtaaac agcatgctgg atgagttttg gcaaaatgct gtgggattgt ttggcagggc
      601 accatttctg tgtcacaacc tgcaggaggc caattctggt tgctgggaat ctgtctcctc
      661 atggtatggc tgggggaagt tacttttccc c
//
LOCUS       KCOD01001960             459 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 218480pyr ultra-conserved element
            locus uce-2457, sequence.
ACCESSION   KCOD01001960
VERSION     KCOD01001960.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 459)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 459)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..459
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="218480pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>459
                     /note="ultra-conserved element locus uce-2457"
BASE COUNT          147 a          102 c           91 g          119 t
ORIGIN      
        1 ccacggaagt ggattttcca ttactccgta aaaccttagg aggccatgag ttaactgaag
       61 caagcagaac caaaccaaca acgaagcaag gaaggtacca tagctacttt cttgaaaaca
      121 aaaccaatct tttcattcct gccatttgtt agaattcttc ctccaggcaa gctggacagc
      181 tgcactagta ggttttttag tcatgggttg taagccccac ctggctagat ttgtttagca
      241 gacagctggc agaatgaaat aaaaagaaca gggacataca aactgcttcc aacacttttt
      301 ggatgctttc actgagtgta tttggtgtat gagattcttc ccttggtccc ccatctctct
      361 gcacccgaaa aaagccaaag cgagactgca ggctgcatta aacaaaaaag gaagggaaaa
      421 accccatctc agactattta ttttgtagaa tatatgaat
//
LOCUS       KCOD01001961             732 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 218588pyr ultra-conserved element
            locus uce-6196, sequence.
ACCESSION   KCOD01001961
VERSION     KCOD01001961.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 732)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 732)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..732
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="218588pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>732
                     /note="ultra-conserved element locus uce-6196"
BASE COUNT          259 a          126 c          117 g          230 t
ORIGIN      
        1 tttacacttt cagcaaaaat gtgaacagta tatttgaata tattaaaaag aattaaaaaa
       61 acatttcaca aaaaacattt gttgccatat gaaagtcttt cagcaataaa tgcccacacc
      121 agtatttaaa cattgttaaa agtataatga tttgtactaa taaattatgc aacaagagag
      181 gtaaacaaaa taaaattaca gtatagctct ccatgttcct ccactgagca tccgcagctc
      241 tcggaagctc cattttagat gactaattaa gaaactgata ttttcagagc aacaaaaata
      301 aaagctttta tttgttcatt tgaatataaa acaggcgtta tcacagatgt acaaagcgta
      361 ctggtggttt aacatacaag aaggttgctg tcctttgcac ataaaaattt ttgtttgaat
      421 ctgtgattgg ctgagtttct ctaaccagtc accacactct atgaaataac gctgctaaca
      481 ttcaactgat aaaagggaca gtcttccctt gggtaaagtg tcaagcagga ttaaatatat
      541 ataataaaca agcaccatga ggaatctgct cctgtttgat tagttttgtg tttaaatgtt
      601 cattgtgtac cctcgtgcat gtgcatcgag ttgattacat ggttttgtct gactccaaaa
      661 gcacaaggtc acaagacaaa cattttatac attctcatga atggtttatc tacagtacag
      721 tttctaatac ag
//
LOCUS       KCOD01001962             648 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 218698pyr ultra-conserved element
            locus uce-106, sequence.
ACCESSION   KCOD01001962
VERSION     KCOD01001962.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 648)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="218698pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>648
                     /note="ultra-conserved element locus uce-106"
BASE COUNT          192 a          140 c          167 g          149 t
ORIGIN      
        1 gcagaccttg tgtgaaatga gcgctgtctc tttaagctcc aggacctgct acacttaagc
       61 agtctgcagc caaggaaaag ttctgaagtt aaactctcag gagcaaacat tttctacttg
      121 tgaagtaaac tctgttgaaa gacagcagac tatggtccca ccagtaaaaa cagaaaagtt
      181 ttcagccagt gacagctctg cctacagacg agaaaaactg tcacagactc actttattaa
      241 accatatgct cattgccctg tgaagaaagc agggtcacta attagttcat tctgtgaaag
      301 aagcccctcc tgatcccgtt gacttttgtc cccctggtta gctcaagcta tttctgtcat
      361 gcaacttgaa aatcactgga gggaagaaga tcgccataac aaccgctgaa atgatcttgt
      421 ggaatgtgtc tagtggcact ggaataacct gaatatgtgc tccagatgtg tcggctgtca
      481 cggaaaaagt aaacacatct gatggacaac gtatgactgg atggcctcac agttgactcc
      541 agagagttgg gatggagggg agggaaagga aaggaggcag ggaaatggag tcaagggcca
      601 ggcaagagtc accctgtgga cctgtgcagc ctggcaggct gagagggg
//
LOCUS       KCOD01001963             587 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 218800pyr ultra-conserved element
            locus uce-3835, sequence.
ACCESSION   KCOD01001963
VERSION     KCOD01001963.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 587)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 587)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..587
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="218800pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>587
                     /note="ultra-conserved element locus uce-3835"
BASE COUNT          194 a          107 c          102 g          184 t
ORIGIN      
        1 tatttccaaa acttatctgc ccgaaagtca cgccttccac attcagtggg aaccatggga
       61 tttcactgtc tcagagaagt gagcagcatg tatttcaata tactttgtag catagtaaaa
      121 tattccattg aaattacaag atctaaaaca attactttat tgcttcttat aactttttaa
      181 aattcaactc caaggtagta attggcaggg acaaaattgt gtagcaatta gggcatgaca
      241 gcaaaagcaa acaagaactg aaaatgggtt cgacacttct ggtaacaagc aggtaattat
      301 cacagcagct tgaaaggggc ataatcaacc aaactgacat catccctccc acataataaa
      361 atgtgaaatc cctttacgtg cagtgtagct cttacacaca gctggtaaat gctgctagtc
      421 tagtctcaga gcagctgagg ttacatttgg gatggttcaa gagtggataa ttttatttat
      481 ttatttagga tggtaatagc tattacatgt tttcatccta caggtattac ttttataaaa
      541 ttctcttttc tgagtataac tttgttttca aagttccaaa aaaatct
//
LOCUS       KCOD01001964             581 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 218905pyr ultra-conserved element
            locus uce-3795, sequence.
ACCESSION   KCOD01001964
VERSION     KCOD01001964.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 581)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 581)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..581
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="218905pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>581
                     /note="ultra-conserved element locus uce-3795"
BASE COUNT          217 a          102 c          106 g          156 t
ORIGIN      
        1 taatctggta gccactgtta gaaaaccaca acagctactg gtcatggaga ccccgaggtc
       61 agtgtctgac atcaaaacgg ggcagattaa tttctactga agggtgctta agcttaaaaa
      121 tatcgaatat acctctgaca agataatttt taaaaggact tgtgataaag aattttatct
      181 ttctaaatga agaacagtct gttatcttaa acatacacaa tattaagcga gactcttgtt
      241 ttactttaga ctggaaaaat atgccaggga cagtcaaagt caacacaaag taacaaacag
      301 caaaaggtag cagagagaga aacaggtaag tgcagctctg gtcaaatcca tagcagttct
      361 ttacgtcagt taacggctca tttacatcag agtttctaat cagttacatg caagcccaaa
      421 gaagcgtttg atcactacac atggtaataa aatttgatta aatttatcag gcaactgcta
      481 aaatatgaaa atttgcagat gtaataaagt agctttatct gaacttgaac aggacagaca
      541 aaagtaaatc attccgttgg ttaaaaaaac cctacattca g
//
LOCUS       KCOD01001965             452 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 219008pyr ultra-conserved element
            locus uce-5405, sequence.
ACCESSION   KCOD01001965
VERSION     KCOD01001965.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 452)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 452)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..452
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="219008pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>452
                     /note="ultra-conserved element locus uce-5405"
BASE COUNT          111 a           87 c          108 g          146 t
ORIGIN      
        1 gcagcatcag tgcaacttca gtgggagctg cagaatggat ctctgtgctc ccagatcact
       61 cgagtggatg gcaagaagct gctactgtac agggagcagt ttggggagat actgcagcgc
      121 accctacact taacctgtaa gcagggttac attctgtctt gtaacctact gcaccatctt
      181 cttcgttctg ctacacttat ctaccccaca gagtactgca gtgtgccagg tggctttgac
      241 aagcctcttt ctgaatactt tcctatcaag gcaaggattt tcatttattt aggattagag
      301 gatttgactt ttatttggac atttctggtg gtagcagcaa gatgctttgg gctttgaaat
      361 gtagagcaaa tgacgattaa tttaaagtac attgatagct agttttagag ttgacttatt
      421 agtggtttat ggtgtgtgtt ttaccatgat tg
//
LOCUS       KCOD01001966             713 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 219113pyr ultra-conserved element
            locus uce-3188, sequence.
ACCESSION   KCOD01001966
VERSION     KCOD01001966.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 713)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 713)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..713
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="219113pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>713
                     /note="ultra-conserved element locus uce-3188"
BASE COUNT          213 a          150 c          141 g          209 t
ORIGIN      
        1 tctccggcct tttttcctgt ttgcagaggc aacaattgta tccattacca aggtcagtgg
       61 tttggagaaa atagcagcta ccagaaaccc actagaataa tatctccagc aggtgataga
      121 ttagttggaa caaattggaa ccatcgcact tcagcaatcc tggtttcttt caagctgttt
      181 taaaaatgtc gtcattttaa tacacaatat cagccctgag gaacagtcca cagcaggtta
      241 atttgaatca tatgatgtat cactgccctc agctgacatg agctccgttc catgtgtgaa
      301 gccataataa atccattccc aaccgaggca aattccctgt gagaaggtga actaatccag
      361 gcctcacact ggcatgttag ccctccataa ttgaaagcag ggccacctgt tcccagcaca
      421 gttagcctat agagagaaaa ttagcattag atcagatact taatatattg aaaaatcatt
      481 catactactt gcaagttcag ctgtgtgctg cttagcatga catcatatat aaacctagga
      541 atgtgcccac ttgatcccag tttaacagtt ttgttaacca tggtgtttgt taactttgaa
      601 aggagaattt tttgatttaa tgagagctga cacgtgagaa ggggaactag ccagggtgca
      661 gacttttcta attaactctg ggtcatttgc aaaacttttg agctttctag ttg
//
LOCUS       KCOD01001967             918 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 219226pyr ultra-conserved element
            locus uce-1805, sequence.
ACCESSION   KCOD01001967
VERSION     KCOD01001967.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 918)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 918)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..918
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="219226pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>918
                     /note="ultra-conserved element locus uce-1805"
BASE COUNT          283 a          191 c          185 g          259 t
ORIGIN      
        1 agaaagcaag cactcagtta aacaacccat acctctacag tttcacttgc tcctttagct
       61 gaacagtttg cacagagtgc attaggtgcc cagcttgacc tgcgaccttc tgtgaaatca
      121 cccattatgt cctggccata gctttgatgc aatcctcaca ggctttccca aaatgcatgc
      181 gttacgatta ttcagtccag aggctgcacg tattcctgtg ctgtgtttcc tccagcagtg
      241 cttgaaaatg tgctattatt gaaagagtta aaaaaaatcc ccttggaaaa gctaattatt
      301 gcatgcagat acttctttgt gtgatcaagg aggggacaat ttaataggct ctgtaataca
      361 accaagaaca aaattgcttt aaaggaagtc tcttgttgag tgacaactct gttgcctgag
      421 ccaattaggt cccaataaag agtgttgaat tggctcctgc tttctcatta attatgttct
      481 gtcacagaca tggggcttga tttagcaatt ttgtattaca ttaagatact gaaaggaatg
      541 gaacaaatgg ctcactctga taataggcat tctatacacg gtgtgacatt tactatccag
      601 ctgtccataa ggcagcctag cacttcagtt caggggttta tttgtcattg cttcaaaggg
      661 acactcagct tttcacaaaa aagaaacaga gaggctaata gataggacaa aatgtactgc
      721 tgatatgctt tattagagat aggatgctag ggttttgcta acaagctcat ccgttgggac
      781 taagccgagt ttgctgtcaa tcatcctaca cacaaaagca cactagttaa caaggagaaa
      841 tgaattacag acacttattc ctgcctgtgg gatcacaaat acaccaatct gtgaaagagg
      901 cacaaactca gaagacaa
//
LOCUS       KCOD01001968             563 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 219334pyr ultra-conserved element
            locus uce-6829, sequence.
ACCESSION   KCOD01001968
VERSION     KCOD01001968.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 563)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 563)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..563
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="219334pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>563
                     /note="ultra-conserved element locus uce-6829"
BASE COUNT          164 a          115 c           82 g          202 t
ORIGIN      
        1 attttatgtc accatttttc ctaacaaaga gagttgcttt tggtgttttg aattgaatca
       61 acacctttga tgttctatct gaaattctat gactttccaa aaagacatgc tatggtcatc
      121 tgtgtcactt tacttaacta ttgcatttac agtgttatca cagtcctagg taacaatcat
      181 tgaaataact caggcattca atcctggcaa gccacagact attcggcact ttgaaattca
      241 tagatttaac agcatagtgt cagatcattt ttcataaccc ttgtttcctt gtcagcatgt
      301 catagccagt aaagagctgc tagattagta caaatatata aatcttttct cagcttcacc
      361 tcactgctgt ttaatactac tttactacac cactgtgctt actagtttaa aataccttct
      421 gtttggagaa acgcatattt attattatta ttgtgcaatt tccctgagca cagcctgacg
      481 gctgcatagc actttgtcat ttatcattgt acacaagatc tgtcaacttg ggaaacaatt
      541 tcaattctgc atgaaattac ttt
//
LOCUS       KCOD01001969             477 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 219444pyr ultra-conserved element
            locus uce-7715, sequence.
ACCESSION   KCOD01001969
VERSION     KCOD01001969.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 477)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 477)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..477
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="219444pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>477
                     /note="ultra-conserved element locus uce-7715"
BASE COUNT          151 a           95 c           77 g          154 t
ORIGIN      
        1 aaaaatcatt aagactaaac tataaacttg agagcaaata gaaaagtttt tttgtgatgc
       61 atttctctat atttattctc actagttact tgcagttggc tactgaaact tttctcttat
      121 tacagcatgt attgcaaaaa tgaagtacaa gtgtatactg taccttgttt tacctgtaag
      181 gaacacacac ctgacaaaag gcaatcttca catccagagt aggttcacca caataataca
      241 agaaatggcg gctcataaat acctgcgaca tagaaatctt gtctggctgc tgaatgatgc
      301 agctctagct acatttggat tctaaaacca acctgagttt ttacccagct tgtgaaaagt
      361 tgtaacactg ttctttctga tgcttgtcaa ggttatggcc ccaaatatga cttggttaca
      421 tctaacttta cagtaactgc tgccataagt ttatcatgtc acttgcatat tcctaca
//
LOCUS       KCOD01001970             698 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 219551pyr ultra-conserved element
            locus uce-7699, sequence.
ACCESSION   KCOD01001970
VERSION     KCOD01001970.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 698)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 698)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..698
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="219551pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>698
                     /note="ultra-conserved element locus uce-7699"
BASE COUNT          180 a          159 c          153 g          206 t
ORIGIN      
        1 tctcttttaa aagtgtaatt ggtcaatgga aagagtagca gagataccgc tatgaaaggc
       61 agctttggac tcttctagac atctgctgct gctttgcaga tgaggaaaaa cagacccaca
      121 tctgcagccc ctgtttcagt gcagtgtgct tttttatggc tctgatagca gattacagtg
      181 ccactgtcat gagcccttgc agccccagtc acagtggaca ctgtgcattt caatacctcc
      241 tccactaatc tttcccccac tgctcccatt ccctggctgc taatttcacg caggcactta
      301 aacatgatgg ataattgtgt tctgcttatc aatgtttaat ttaagggctg ttccatctga
      361 cctgaatgcc ctctgcaaga gctgtgcctc attattgatt tcatggtcat acctgtgaca
      421 ttacctgctt tgtaggaagt agactttgac attcctgtga ggctttggca gccagagcta
      481 attgtcagaa gaataatcga gtcagcaaaa tcattacagg tgatctgtat gttaccactg
      541 ttttatctgc ctctaattag gtgcaggaga ggtaactcat cacagtaagc acaccgcact
      601 ggtttgatgt ccacaaataa agcaagatga gcacaggagg ggagttattc attaacagca
      661 gcaattcagt gtgttggagt cctgtgctgg tgacatct
//
LOCUS       KCOD01001971             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 219660pyr ultra-conserved element
            locus uce-6414, sequence.
ACCESSION   KCOD01001971
VERSION     KCOD01001971.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="219660pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-6414"
BASE COUNT          162 a          135 c          107 g          198 t
ORIGIN      
        1 ctgcattaga tacagctttc ctgcccccct tgtgtttccc caaatgcagc cttaataata
       61 gatatcagat actttatcca tatttgtgtc agtcctatag aattcctgca acagtttatg
      121 aacttctctg aaatagaaac attggatccc catctttcac aaatagcaga aaaggaggag
      181 acaatgggaa aatgatgacc ttctggcaat tcaaatgcca ccagtgtctg tgtggcttcc
      241 tgtgacagtt ctgttaatct ctcttttagt ctcttcctcc acctcttaca ggcttctgtc
      301 ttcaatctcc tttccttcct tgctagttca tactgtaact gacgatgggt tttcttctcg
      361 actggcttca tttttgctgt tcttccagga gaaaaatcta ttacctgcac cgccgataca
      421 agttcatgaa taggtgagta caattcttac gcctttatgt tcatttggac caggaacaaa
      481 aataacggtt aaagtcaagc tggaaggcaa agtttatttg tagaaaggac aaagggagtg
      541 attacacact tgcatttctt taaagaactg catctccttc ttttcatgta gctcattagg
      601 ga
//
LOCUS       KCOD01001972             597 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 219769pyr ultra-conserved element
            locus uce-747, sequence.
ACCESSION   KCOD01001972
VERSION     KCOD01001972.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 597)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 597)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..597
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="219769pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>597
                     /note="ultra-conserved element locus uce-747"
BASE COUNT          211 a          102 c           93 g          191 t
ORIGIN      
        1 aaaatcctgt gaccatgtac cagtaattca gatgtttgta tatgcttcta cagatgtata
       61 ctggttttat tggtatgcat tcctttaata gtataatcta aattcatttt acttgataag
      121 tttttatgca gatcttacaa cacatttttc taccacatgt tggaacattt gtgcaaaaaa
      181 aaatcccatc tttatgtttg aaatttatgg gaacacaatt aaaatgagag gggtccaaag
      241 gtatcaagat aattacattt ttctaatctt actaaacaag ataaattacc tgcaggccct
      301 cttataaaag atgaaatctt cataataagt gaattaatca agcagcagct tgctactgca
      361 catgcattta taacaggaat gattcaaaga cttattttat ggggaaatta atggaaacag
      421 gcttttcatt cttctgcacc aattgaaaac ctcagcaacc agctgcccac ttgtcaagaa
      481 aacagaaaga agctggaaac aaagataaat aaaaacacct ttttcctggc acttttgaag
      541 agaaaaagca gctctcattt acagcagcca tctgtttgtt atttaatatg ggtgaat
//
LOCUS       KCOD01001973             447 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 219879pyr ultra-conserved element
            locus uce-2509, sequence.
ACCESSION   KCOD01001973
VERSION     KCOD01001973.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 447)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 447)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..447
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="219879pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>447
                     /note="ultra-conserved element locus uce-2509"
BASE COUNT          119 a           86 c           86 g          156 t
ORIGIN      
        1 cttgatttat tgtaaaacct cttgtccagc catggctgga caactacttt ctttgtttct
       61 tgatacgacg ttctcgtaaa atattgcctg attttgggtt acattagcgt ttgatctatt
      121 cagtcgtgtt agcttgtttc tgttgtactt aagtcaaagg tgcccatagt ttagcgacag
      181 tttccaaagg ctttagtacc acctgtatta caaaatgggg gacccaaact cccggaagaa
      241 acaagctctg aacagacttc gtgctcagct tagaaagaaa aaagaatctt tagctgacca
      301 gtttgacttc aagatgtaca ttgcctttgt gttcaaagac aaggtaactt ggttttaaat
      361 taagtgttct gtgcaaattg ctgcctgatt gctccttaat agattccatt gacaattgct
      421 agttgctata acttcatgtt tgtcatt
//
LOCUS       KCOD01001974             725 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 219987pyr ultra-conserved element
            locus uce-3638, sequence.
ACCESSION   KCOD01001974
VERSION     KCOD01001974.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 725)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 725)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..725
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="219987pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>725
                     /note="ultra-conserved element locus uce-3638"
BASE COUNT          212 a          147 c          122 g          244 t
ORIGIN      
        1 ctttctccat agtcatgctt tttgtaatag gaaccagtag ctctctcttc taaattgact
       61 gtattccaca caactttgaa gatttttggc atcccttgtt cgtatgcaag ttagggtcaa
      121 gcttttgagt ctcctaatca ctcagttctg gcatagtcct gttgccacta aagcctcttt
      181 tcatgcctat ttaatgtctc agaagtgctt tcaagtggtc tttgataaat catagtaagt
      241 gttattccag tcgctcaata gcagtacctg ctggagtctt ttttagctcc caaggcagct
      301 gttccctctt gccttatttt accagtgaca gtaattcatt ccacttgagc tgactagctt
      361 atttcacatt tatttgcaca ttatgagcag tgtcattcta cttacccttc agacagtaaa
      421 tggtttgaaa aatgcaactg taacaaatat taggcatggg gaggggaata ggaaaatgga
      481 acgggagtcc aaataaaaac ataatgaata aataatattt taaaattgtc tcaactatcg
      541 agtgtatgta aaaatcaaag gaaactggca ttattccttt gagaatacat ttctctttcc
      601 cgccatctag tttagcttcc ctagagtgaa gttaaataaa atattaccca tcaggtcagg
      661 aaaataatta gtcctgcatt attgcctcct tcctaagcaa tcaaacttga cccatatata
      721 ttatg
//
LOCUS       KCOD01001975             487 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 220095pyr ultra-conserved element
            locus uce-3589, sequence.
ACCESSION   KCOD01001975
VERSION     KCOD01001975.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 487)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 487)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..487
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="220095pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>487
                     /note="ultra-conserved element locus uce-3589"
BASE COUNT          171 a           90 c          102 g          124 t
ORIGIN      
        1 gattatgttg ctaccgacag cacttcctgc acacaaaatt gacagtagtc actgcgtatt
       61 gtcaaactag gttggttatc acatgtgagc atacggtgtt aatggatttc agaggctgat
      121 aaatgccttc atagactaga aaggcatggg gaaaacataa gatctggaaa attcagtcac
      181 caaatcaggc ctagttgcac atcaactcat catggtcagt cttattcaaa ggaataatgc
      241 atagaagaag tcacacacac atctcataaa acaaaattta tctttaattt gtaagtgtca
      301 acagcagtac aaaagatgga gtgatggtga atagattaag ggtagagagg acagtcttga
      361 ggtaaatgag cataaatagg cagtcttata gacactcccc tgaggggtct aaacccctat
      421 catggcatat actgtatcac ccaaggatga catgtttaac atatcaggaa agcaccttgt
      481 gcaaaaa
//
LOCUS       KCOD01001976             573 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 220198pyr ultra-conserved element
            locus uce-1629, sequence.
ACCESSION   KCOD01001976
VERSION     KCOD01001976.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 573)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 573)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..573
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="220198pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>573
                     /note="ultra-conserved element locus uce-1629"
BASE COUNT          189 a          123 c           89 g          172 t
ORIGIN      
        1 tcttcatgct gataacaata aagtattttg tacagcgatc aattttttat gctttattca
       61 ttgattaaaa gaatataaca tttaacataa accatacaac atcagtcatc aattcaaaca
      121 ttcagctggt ttccttacat tttctgtcag gagaatctga tcacatttat aagataaaat
      181 ctcaccacat ctggcatata cacacactgt gccagtggat tcactctact gatgtacata
      241 taaaatccgc atggtatgtg ctcactggag acaaaacagc gcacacctgt caaaaggtca
      301 ttttaatata agatggtaaa accatttgta aaacacatat aaactttttc cataaataga
      361 atcatatctg gacatctgtt gcataaattg tgttttccaa agcttacaat atagcagcca
      421 ggtctcagca ctgctgggca cccacgttgg ccacttttta ttattgcaga ctgtccttta
      481 aacattaaat gcacaacatt cgtaccactt aaaactgggg tcaggtggaa gtctcacaga
      541 gaccacgtct gtaccgcggt tgccctgaaa cag
//
LOCUS       KCOD01001977             507 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 220311pyr ultra-conserved element
            locus uce-3828, sequence.
ACCESSION   KCOD01001977
VERSION     KCOD01001977.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 507)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 507)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..507
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="220311pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>507
                     /note="ultra-conserved element locus uce-3828"
BASE COUNT          176 a          103 c          102 g          126 t
ORIGIN      
        1 ctcttccttt caactgctag aggccttgaa aagcagaatg agttaagttc ataatataat
       61 tgcttctatc ctgactaaaa gaaactacaa aaaattcagt gcatcagaaa ctcaacactg
      121 aaaagggaga aaggtgcaag tcttcccagc agtgaatccc aaattttttt acatttctct
      181 catacaaaag tgatacataa tagaaaactt aacttctgtt ctgtttgggt gagccaggaa
      241 gccttcttgc ctcatgtaaa tggaatggca gctaggcact tctgaaagga gaagatgaaa
      301 agactggaat taaaagtgtg caggttatca atgagactgc aagcagaaga gcagctgaaa
      361 gttacagaga gagggaacct gtcaaccagc atttcagagc agacgtatgg ccaaaaaaat
      421 catgatgtgc ggatcaagat cctatctggc acttgaactc caaaccttct gtaagaaact
      481 tcgctcttta gaccatccac accactg
//
LOCUS       KCOD01001978             508 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 220417pyr ultra-conserved element
            locus uce-5113, sequence.
ACCESSION   KCOD01001978
VERSION     KCOD01001978.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 508)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 508)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..508
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="220417pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>508
                     /note="ultra-conserved element locus uce-5113"
BASE COUNT          160 a          101 c           90 g          157 t
ORIGIN      
        1 atattaactt ggaaacagta gccctgtagc aacatattga tcctggagaa taacagtact
       61 actttttcct tagttctatc atctcttaca attgacagaa aagaaagttt tcttaaattg
      121 ttagaacacg tttattttct tgcaaattaa ttctttttaa ctctttatga tagctttgaa
      181 tcccataaag aaagatgaat tatcacatac tgagcccaag ctgtgaaaca ggaggagaca
      241 aatagagacc cctactgtgt ttaacaatgt agaagaaatt ccagactcaa aagaaaaatt
      301 ttctgtcctt tttctcagcc cacaaaagct gttagtatgg ctttgaacag tggagggcac
      361 tcttgctatg caaaacccgg cgctgacctg gcgcactagg tttgatctat tcagtagcct
      421 gaatctcaga atttgttaag taacagccac ctgtggcaca ggcactaact gtactctggt
      481 taaaacattt gcagtttcta atctgtgc
//
LOCUS       KCOD01001979             631 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 220525pyr ultra-conserved element
            locus uce-6566, sequence.
ACCESSION   KCOD01001979
VERSION     KCOD01001979.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 631)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 631)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..631
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="220525pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>631
                     /note="ultra-conserved element locus uce-6566"
BASE COUNT          176 a          125 c          137 g          193 t
ORIGIN      
        1 attcatctgt gtttttcctg ctggagaatt actgcctggc acatcaatag gctgcaaatt
       61 atataagggc tgtgtttttg cagccggatt gccattgtcg ggagggtctt ttagctaaac
      121 tgcctttttc tgcaggaatt tcagatgtct gtaattgctg ctcctttcag cacagcttaa
      181 ggtatcaata tcaactccat ttgaatatca taagtgggaa gttgctctaa gcaaaaacat
      241 gtcagttgcc caggtgacat tttgtagcaa acaaggaaat cacaactcca ggaagtgttg
      301 tattttatgc caacaacaat atgacagttt tctctgtaaa gaaaacatga cacttttcca
      361 aatatcagag gatgcctccg ctgctcaagg gattcctgta ctgtcactga aatggaaggt
      421 cacaggctgg tttcatgatt tctatagttt caaaatgttg tggtggagcg tttgcacgct
      481 aaatgctgta ggctaaggga aatctttccc ttcatctctg agagaagtga caggaagaaa
      541 aaggtcctac tttgacagca gtaacctcta ggtctagagg ttctgcccca agcaactctg
      601 aagtaaaatt acctatgtta atgtgttgtc c
//
LOCUS       KCOD01001980             387 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 220626pyr ultra-conserved element
            locus uce-3992, sequence.
ACCESSION   KCOD01001980
VERSION     KCOD01001980.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 387)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 387)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..387
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="220626pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>387
                     /note="ultra-conserved element locus uce-3992"
BASE COUNT          119 a           84 c           82 g          102 t
ORIGIN      
        1 agaagtagtc aaaatgtggg gggaagaagc agtgataatt gttcttcaat aaaaaagtag
       61 aaaatatcca gcttcatcag taatgcaggc cctgccatcc ccagatgtta cagaagcatt
      121 agaattgctc cctgcaagaa aaattggatt agtcacaatc ttgtcgacta atgggcacac
      181 tctgtgatct ttagagcttc atttactggg ttaatagtgc tttgcctgag ttcctttcca
      241 atagggaaac ctgtaagaag aaatattctg ggtgcagtcc acagccactg acacgagtaa
      301 tatcatattc atcacagaca gacctcgtat ctcattacta ctgaagagtt tgcccccaag
      361 gcatttgagc tcagtcaggc caggccc
//
LOCUS       KCOD01001981             424 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 220736pyr ultra-conserved element
            locus uce-6467, sequence.
ACCESSION   KCOD01001981
VERSION     KCOD01001981.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 424)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 424)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..424
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="220736pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>424
                     /note="ultra-conserved element locus uce-6467"
BASE COUNT          139 a           78 c           74 g          133 t
ORIGIN      
        1 ttttttttaa taaaaacact tcaaactgcc tttcccttaa ttaaaaacac atcaagccat
       61 ggataaagca ttgtggaatg gcttgttgtg gcattgcctt ttacagctag gaagcaaatt
      121 tctaataaaa tggtttttga aaggaatatt gccttcattc aaatctccta taaaaactac
      181 ccatccatta attccaatta atgacactac agcatttcca tgaacagtga tagtaattct
      241 tggctaatgg atgattttca agaaaatcag aatcaatgtt agtgtggaca ggccttgcag
      301 aattaattta ctgccccaac attagttaaa ccagcatata aatcacagtg gtttgaactg
      361 ggttctcagt gtcattgaac acagcgcatg acatgagttt cctgtgggct ttacagggag
      421 gata
//
LOCUS       KCOD01001982             816 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 220842pyr ultra-conserved element
            locus uce-5101, sequence.
ACCESSION   KCOD01001982
VERSION     KCOD01001982.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 816)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 816)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..816
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="220842pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>816
                     /note="ultra-conserved element locus uce-5101"
BASE COUNT          284 a          134 c          157 g          241 t
ORIGIN      
        1 aaacatgtat gtttttcata aagctctgga aattgtactg ggcccaaggg aaggtaccaa
       61 gtggaaaccc tgatatcttg agattagaac tctactagtc ctgaggtaca atgtgctgtt
      121 tgtaacaatt ataataatac acctgtacta ccattgtcag tgtggagtag ccacatgggg
      181 tctcattagt attgtattag gactgcatgg ggaaacggat aatggcccat aatgaaaaat
      241 gccaaatttt ctatataata aaaatgaact tgattaatga aaatcacttt cagggaaaga
      301 gttacagcgt tgttagaaat aaaaaatgat gtattaatcc gacactctta cagatggtcc
      361 caacctcctg acaactgcta ttcatttgag atgctattag catgcataat tatgctaatt
      421 aagttgtaat taagcaccaa ttcttcagag ggcttttttt gtctatcatt taatacaact
      481 cagcttcaaa gagtgcttaa agctttacac agtgtttcat gagaaagggg ttcccaagtt
      541 tcttagcaaa gattcagcag ctgagctatg gaacagggcc tgtaatcttt gttttggtta
      601 aagggaaaac agcaaattga agcagggtct gccaattgtt gataaaataa ttaacacttt
      661 ctgctaaaat agcacagttc agactaggac aattatgaaa aggagaaaaa tggtataatt
      721 atcaatggag ccaacaccag tggactatta tggctgctac cccctaattt gaaaaaaata
      781 attcattgaa aagtagattc ccgtaaataa taataa
//
LOCUS       KCOD01001983             387 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 220948pyr ultra-conserved element
            locus uce-4001, sequence.
ACCESSION   KCOD01001983
VERSION     KCOD01001983.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 387)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 387)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..387
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="220948pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>387
                     /note="ultra-conserved element locus uce-4001"
BASE COUNT          134 a           59 c           81 g          113 t
ORIGIN      
        1 agcattaaag aagcagaata agtacattta cagccttctt agtgctgccc acagggtgct
       61 ataaatgcac aaactggata taattgaagc acatattaac ttaccttctg ttgtacagga
      121 agaacataag caggctgtta atgtgcacag tgttgaaact cttaacttgg gggatgagaa
      181 ttagcttgca gtagtaattt gataagcacc tgggaaaatt gcaagcttca tttcctgcaa
      241 cgtggaatat gattaaaaac agaatatatt attatcaggg gtaccattaa aaaatgtgta
      301 gacagcattc tatgatgtta aaacggaaat tgaaagttgt atccagatgt tgaagatgct
      361 gcatgttaat tattgtctac cacagtg
//
LOCUS       KCOD01001984             768 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 221057pyr ultra-conserved element
            locus uce-3633, sequence.
ACCESSION   KCOD01001984
VERSION     KCOD01001984.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 768)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 768)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..768
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="221057pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>768
                     /note="ultra-conserved element locus uce-3633"
BASE COUNT          264 a          118 c          138 g          248 t
ORIGIN      
        1 tgaaaaattg gcagaagttt tcaccctgtg aaaacagtaa gataaataaa gcaaattgat
       61 aaatcccatt tcatagaata taggctctag gattaaatgc tgtaacacat agcagtaaca
      121 gatcattcca ggtacagaac accatatttc aaaagacagt taatgctgta aaaggaagga
      181 ttatttgaat gattcttata cctttatgtt ataaaaagta gcttcagtta tctggggttc
      241 tggagtaagt agagtaagag gttataagtt aagttgcaga caaagagctt ctactaagta
      301 ttacatcatc aaaatatttc acagacactc agaaataagc tgtacttcta tatgtcagtg
      361 aagcagcaaa ttgaattctc ataatatgtt ttgaaaatga gtcttgttag gtttgatgag
      421 gtggaaaacg tactgagatc actggtttgt tccaatacat tcagtatgct tttcttggat
      481 gtttgccatg gctaatcttt ttaatggcac tgtagcttgt aaacccattt ggtagagagc
      541 tgcatgtctc catttcagag tatcacacca agcaggatgg taaataagtt tctcttcaag
      601 catgcaaacc ctttttttac aaaaccagaa attttatttt aatacacacc tcagtatttc
      661 ctttatgaat acagtgagga gcagaataaa atgcaaatgt ttttcaaata tactcacaca
      721 taatatgtag atgtttttta ggagttttat caagggcaga cttcaatt
//
LOCUS       KCOD01001985             618 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 221163pyr ultra-conserved element
            locus uce-5280, sequence.
ACCESSION   KCOD01001985
VERSION     KCOD01001985.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 618)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 618)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="221163pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>618
                     /note="ultra-conserved element locus uce-5280"
BASE COUNT          151 a          158 c          146 g          163 t
ORIGIN      
        1 agcacaactg tacacacata aataattcag gccactaaag gctgctgcgg tggcgacttt
       61 ccaggagatt taatgttccc gtccctcacg ttcctgccgc agcagaaaga aattacaact
      121 ggatctgaag gagcaggttc ccctctccag ggagccgtgg tatgccagag gctgctccct
      181 gctcctgccc actcctgggg cctctcctgc agtccttgac atttcccttc tcaaggggca
      241 agtccctggt gcatcctccc agagtaattg tgaaattgtt atggctggtg ttttaattta
      301 aattggatgg agaaatgttg tactgcggct gcctcatttg ctatggattt tcacttaacc
      361 aaattgatta gtcaaccaac tagacttacc ttggaagttg taatcattca ttattagatc
      421 taattttcgt gtcgctccca aatggaagtg caaggacttt aacggagtct gggtggagcg
      481 tctgaaccct tggagctgtc accggctgcc tgctcagggc atgtgctgca tcccatcccc
      541 ttcctgggat gcaggaacag ccaggctgct caggaatgac catgaaatac agcagcaaag
      601 acttacagtc caaatgaa
//
LOCUS       KCOD01001986             658 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 221273pyr ultra-conserved element
            locus uce-6125, sequence.
ACCESSION   KCOD01001986
VERSION     KCOD01001986.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 658)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 658)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..658
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="221273pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>658
                     /note="ultra-conserved element locus uce-6125"
BASE COUNT          198 a          110 c          115 g          235 t
ORIGIN      
        1 tttttttaag tgataaggaa atatgtgcta cttgcaagtt gctccttttg gcaaacatgg
       61 gatatccctt tttagtatgg attctgttcc atatgtgatc attccttttt tgccaaactt
      121 ccttagatgt gcaccaaatt gcagaaggat gaataccaac tttgcataat ttgaacaaga
      181 aagccttgca gtgctacttt tctgtttaat ttacaaatta tgagatacat aggacataag
      241 taagggcaga atagagtcct taatcttaat tattcattct gcagtattat aaatgactaa
      301 agattacttc caatgtttgg tataatctta cagtgtgcag atgtggttct ctttggtata
      361 tgccatcttt actgaactca caatttccat aatgctgtca cattctgcat gggaagcaga
      421 tttacagata ggtaatccat gtaaggtatt ttaaagacag cttattaaag gattgaggcc
      481 tgctgttaaa ttacatatgc tttcaattgc tatgaggagc aaacagtatc aagaagtaca
      541 ataatttagc tacagctgga gaaaggccta tttaaagttt tgatgacaga tcctttaaag
      601 ttttcctttt ttctgctttc tatcttcgcc tgcatagcac agtatttcac tttataca
//
LOCUS       KCOD01001987             721 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 221382pyr ultra-conserved element
            locus uce-279, sequence.
ACCESSION   KCOD01001987
VERSION     KCOD01001987.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 721)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 721)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..721
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="221382pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>721
                     /note="ultra-conserved element locus uce-279"
BASE COUNT          233 a          116 c          135 g          237 t
ORIGIN      
        1 gattattgat gtgaaaggga tttaacaatc agaaaacaat agttctttgt tacatttcta
       61 cttttaagca atttaagatg ctgcttggac agatatgaag tcgcacggaa ttttcaaaga
      121 caaagcacta atggctctta atatcactgt gttcatttta agatcaaatt aaaagagtga
      181 aagaacggtg caaataattg tttcatatgt tctttgcttg tgactgctgt aatcatccag
      241 gctgatttac aaatgtagac ttgaaggttt ctcagcttcc tgcagtgtag aagactgtta
      301 ctttggcact cacactcatg cccttgtaat caccactcaa aactgtgccc tggtacttcc
      361 aattcccagt gtcttgattg aacacctcat tctgtgctaa caaggtgtcc aaggtatttg
      421 aacagggact gcagtcagaa aattgttaat ggtttcactc attaagagtt gctgcactag
      481 ttttggtaat ttggtaactg tctaaattgc aagttgattt ttttccttca ttttaaataa
      541 tgatgctaaa atttgagacc aggaacacta acagctaaaa aaccccagaa gggtgcttaa
      601 atcactgtat ttgtattaaa gcaaagggtt ttcatagcag aaaaggtagg atttcaattt
      661 tgaggttatg ttttaaaatt attgagaaat gcataaacaa gtattaaata gaaatctaag
      721 g
//
LOCUS       KCOD01001988             533 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 221491pyr ultra-conserved element
            locus uce-1107, sequence.
ACCESSION   KCOD01001988
VERSION     KCOD01001988.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 533)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 533)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..533
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="221491pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>533
                     /note="ultra-conserved element locus uce-1107"
BASE COUNT          144 a          126 c           96 g          167 t
ORIGIN      
        1 ataagataaa cacacaatta tctaaaatgt aatcttaata tgacttatta aaatagatta
       61 cattttaatg tgcactgcaa tttttatcca gcaccccctg tgcctctccc ctgacaacct
      121 gcaccgctgg agatacaagg cgaaaacccc gccgctatct ccctctaaat ggctccattt
      181 ggtgttgata gtcagataca gttctcacct ttatcccagc ttgtttctga cccactgagt
      241 tcgtgttaat cacccctgtg ggcaccaata atttccccat atgtggaatt tgataagtta
      301 gagcacccac ttcatttcaa gaagattcca gctggcttat cgctatggac agcttcaagc
      361 acttccatgc tggtccttgt attctgagct ttatcaagtg ctttgcacgt cttttatctc
      421 ttaattgaga cctgactgca agaaatgcct atctcttaaa gtgtggtgca ttaagtatta
      481 acttgaactg ctttggctac ttgaggtaca ggcttaagaa gctgaaaagg gtg
//
LOCUS       KCOD01001989             472 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 221600pyr ultra-conserved element
            locus uce-2356, sequence.
ACCESSION   KCOD01001989
VERSION     KCOD01001989.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 472)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 472)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..472
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="221600pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>472
                     /note="ultra-conserved element locus uce-2356"
BASE COUNT          152 a          104 c           86 g          130 t
ORIGIN      
        1 aaaaaattat ccacttcctg ctgatttcct ttcctcccca taaagcgagt gtcttatcct
       61 cagagaaatt cacttcattg ttagaaatag ccaaaattgg cttgcaacta gtaaagatgc
      121 caagaatttg caccttgctc tgtgacctaa agcaaaaatg acatgaacat tgacaaattt
      181 gacaaggaaa tttgtgcaaa aaacaacttc tatttggcta gccaagcagc aaatatgtcg
      241 gatgatatgc tttattaagc aatccatttt tcagcaatag ctgcaccatc tgcaaaggtt
      301 agtgtgcatc aggctttcca cagaatttca tctgcgtctg cagctaggtg caacacacga
      361 ccacattttt catgtacata caattttgga tgcaaataga atacttgatg aaagaggtga
      421 ccttccggac tgacttcccc atgcagtaaa gtcacaggcg cagaagcagc tg
//
LOCUS       KCOD01001990             779 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 221709pyr ultra-conserved element
            locus uce-6787, sequence.
ACCESSION   KCOD01001990
VERSION     KCOD01001990.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 779)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 779)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..779
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="221709pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>779
                     /note="ultra-conserved element locus uce-6787"
BASE COUNT          218 a          133 c          153 g          275 t
ORIGIN      
        1 tcttaaggga gtacatggaa atgaagtggt aaatacaagg tagtaaaata agtatctgta
       61 ttgcagacag ctttgttctg gcaactgatt ataaaattat tgattctgtt ctttcctgtt
      121 gagggtgtca ctatgtactt gttcacagga ttgtaggaaa aattgctatt tcttacactt
      181 gcctatcttc tcattcagaa tttacagtaa ggttattctg cttttattct tgcccattac
      241 cacccccatg agggttggtg gaggataagg acagcaaaag tctgtctgtc tttatcttct
      301 ctatctcctc cctttctatc tctctgtctc tctttggccg ttgaaaatgt aggtcatatt
      361 gcatcaccat aaaatggaac agtcagaaag gtgtttgaaa aatgcatcct tagcctgggg
      421 tgcatgccag tgtcctttgt ttacattggg aatagtgttg tacgtgtgta ggaaccagca
      481 tctctgttaa ggttggtagt atggtacctg aattatgagt gagattttag gatgactttc
      541 atctgcctgc agtaatgtaa aattagacag ataaaatgca gccactcaaa tacacaagga
      601 gctaatttga aaaccttaat ctgcaataac tgtgacagtg ttgtttgaat aatgttacct
      661 ttaacagaga agctcagtaa taatttttgc aaatcatatt attcatgtac tctcaactgc
      721 cttgattagc tgtgcctttc tgtcttgaaa aatacgttta tattatatgt ttgtatatt
//
LOCUS       KCOD01001991             422 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 221817pyr ultra-conserved element
            locus uce-3429, sequence.
ACCESSION   KCOD01001991
VERSION     KCOD01001991.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 422)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 422)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..422
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="221817pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>422
                     /note="ultra-conserved element locus uce-3429"
BASE COUNT          140 a           63 c           75 g          144 t
ORIGIN      
        1 aacgggtgct gcaaggatgt aaattagcct gtaatttact ttcagtagtg taaagaaaaa
       61 aaatcacttt gcctgaagtg tatgcatctt tcttaagggt gtacccagat tttaattatc
      121 taaatgtaaa tacttaacga attttactta gagtaatgag ctaaagtgca cactacataa
      181 atgagatgtt ctaattaatc atgtatgaac tactggttta aagaaaagct atgtgaattc
      241 tgcgaatgtt gggctattgc caaattgcta atcagcattt gcattcatag atggcttcac
      301 ttaataagtt gtgagacgtt cagcaaatgt tataggaaat tatgagtttt tagatgcata
      361 aacttttcac ttttaactct tcccctcaca taatctattg aaatgttgga gcatccttga
      421 aa
//
LOCUS       KCOD01001992             533 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 221925pyr ultra-conserved element
            locus uce-7019, sequence.
ACCESSION   KCOD01001992
VERSION     KCOD01001992.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 533)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 533)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..533
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="221925pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>533
                     /note="ultra-conserved element locus uce-7019"
BASE COUNT          126 a          135 c          119 g          153 t
ORIGIN      
        1 tgcggatgtc ctcagtgaag taggcagaga gggctgccaa gtgagggggc acaacttaga
       61 aggagaagaa agaaaaggaa gtctgattaa gttttgtctt gaagtgtctg tttttgggtt
      121 tgtccctgca ttgatctgca agggaatgag gcaagtaatg gccccttggg gaccttcagg
      181 actttcctct caatgtcagc cgtcattttc aatcaccctc tccctcccag ccattaattt
      241 tggcccagga tcatggggac ttgtccatct atcactccta attgacacta aatgatctgt
      301 cagtttattg atgaacggca ggagtggaat tgtcacaata tattttactt tctaacaact
      361 cctcctgaca attttacctt gtccatctca ctctcttcac ataaatctcc attggcctct
      421 cattccttct cttgggctga tctggtgcca gccacctcca tgccatcggc acgcatcaag
      481 gacatcaaga tggcggtaag ctgcaatgtg caggcccagg gtctctctct ccc
//
LOCUS       KCOD01001993             639 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 222034pyr ultra-conserved element
            locus uce-7024, sequence.
ACCESSION   KCOD01001993
VERSION     KCOD01001993.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 639)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 639)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..639
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="222034pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>639
                     /note="ultra-conserved element locus uce-7024"
BASE COUNT          189 a          129 c          111 g          210 t
ORIGIN      
        1 aaccctcaag tgtagcattc agcctctcaa gtccatgatg tatttcattt gctacggtca
       61 gagcaatttt aacaatgcct ttcattttct tatagcctaa aatgattttc tttctgtgag
      121 gccattctcc aaaacttctc ttcccttttc agggtatcat ttgcaattta aagctaacct
      181 ggtgagtgta ctcacaatag gcttgcccat aaaatggttc aaggcctgcc tgcatgccta
      241 atgaggttga tgttgagcta tttagctctt tgtccttcca taatatctac ttaatgcagt
      301 tcaatgggag tggattgtta gaagcattaa agattctatt aagtctttac taaagccact
      361 ctattctagt ccagctgtat agtggcaagg gcattaaatt tgagaatgta gtgggaacaa
      421 ggggcctgaa aaagcaccta taaaaaaagg acaaatttcc tgaggacgta agaccacact
      481 caatttaaga cctgttactt ttgtatctag atctaaagac tttctcaatg tgcatctcac
      541 agcgttctaa attaactctc atttctctgt tgaacaaggt acagtttaaa tcttgcacat
      601 gagtagattt ttgcttcacc acactattga aaacaaata
//
LOCUS       KCOD01001994             514 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 222142pyr ultra-conserved element
            locus uce-4027, sequence.
ACCESSION   KCOD01001994
VERSION     KCOD01001994.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 514)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 514)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="222142pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>514
                     /note="ultra-conserved element locus uce-4027"
BASE COUNT          133 a          158 c          133 g           90 t
ORIGIN      
        1 gtggattaaa atctccccag agcagggagc tcacactcac acagctcgca agcactcggc
       61 gctgccccaa tccttccttc ctcctcgctg ccagccccct ccaggggatg gttacacgga
      121 gcttgggagg aggacgtctt cccatgcagg gacagggagg tacacacggg cacacagagc
      181 tggcacgccg gactcacacc tcacggggac acacacacgt gcacaggcct ccgcggggct
      241 gcagctccca cggccctcag gacacacaca gaagccaaga gacattatgg caggcactca
      301 cttggatttg ttctcctcat agtgagcact ggtcttaatg tatctggcca gttctatctg
      361 catatcgccg aataaaggaa ccacctgcag ctgctggaaa agaaaacaaa agatggttga
      421 aacacggccc tggccccagc acaagggact acctctgaag cgaattgtca ggctgttagc
      481 aaagtgcaaa ccagggtcgt ttcacaccta ggaa
//
LOCUS       KCOD01001995             415 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 222239pyr ultra-conserved element
            locus uce-2224, sequence.
ACCESSION   KCOD01001995
VERSION     KCOD01001995.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 415)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 415)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..415
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="222239pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>415
                     /note="ultra-conserved element locus uce-2224"
BASE COUNT          144 a           74 c           69 g          128 t
ORIGIN      
        1 tttgttttgc caatagcctg gtgtgttttc ccctcctctt ttgttcagaa tgtgcaacac
       61 catcaaaggg acctgattag aacaaaggaa cagggatcac tgtaacaatt atgatagaaa
      121 tgaaaatgca taatagaaaa caaaccccaa aatcaagaaa ataatgccag gtgaaaatga
      181 atacacatcc gctgggaaca attacatagc agatgcatcc aaaaattcat tatcaacgta
      241 taatttgaca tgttcctagt aatgttattc attgcattta caagtaattc atcacaggtg
      301 ttgtgaacta aaatggcata caagatcctt atgttattca ctaggacaag aggaaatgtc
      361 cactttgtaa ttgcacattg tattcaattt ttcttttgtt gtgtaaatcc ttctg
//
LOCUS       KCOD01001996             235 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 222346pyr ultra-conserved element
            locus uce-2278, sequence.
ACCESSION   KCOD01001996
VERSION     KCOD01001996.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 235)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 235)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..235
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="222346pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>235
                     /note="ultra-conserved element locus uce-2278"
BASE COUNT           85 a           37 c           41 g           72 t
ORIGIN      
        1 tatttgttaa actatataag tcagaagata atatggcttt gttcacagta ttacataaag
       61 aagattaagg atgggaaaca agctgcttaa acactgtaaa ctaattagtt caatgaattg
      121 ttttcccgag gttcatgaga tataaaacat tggcaccagt gcgtgaaata caccctgcct
      181 cagtgctctt ttcaatttat tttcatacgt gtatataaaa aagagcagcc agaaa
//
LOCUS       KCOD01001997             766 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 222453pyr ultra-conserved element
            locus uce-7408, sequence.
ACCESSION   KCOD01001997
VERSION     KCOD01001997.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 766)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 766)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..766
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="222453pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>766
                     /note="ultra-conserved element locus uce-7408"
BASE COUNT          201 a          154 c          181 g          230 t
ORIGIN      
        1 ggcttcttaa catggtccaa agaaaaggag aaccattatc tcctacttgc tgcagattat
       61 tcaagccttc tagcaaatgg gctaaattcc tactggtgta aactggatta gctccactgg
      121 tggagttgag ctgtttcaca cactggctta ggatttttcc tgttatgttt gagcatggca
      181 ggaataaaaa ttgtagcatt actcctatgc cgtggatgat aatccatgcc tttccctgtc
      241 cccatggagc tgagttgtct caagattatg agccttagat gtttagagca attttgactg
      301 gatcagaggt tatagcctct gctttttaac attctgcttt tattttcagg ctatgaagtg
      361 taatagttca ccattttggt ttaagtatca caataaaagt cagtgagatg gaacaggcaa
      421 taagcagccg ttttacatca gtgctgctga gacggagtgc ttaagtcttc attaacctag
      481 agaggaagga gctacaaaag acacttgcaa caaaacacca gggatgaggt tcagatctct
      541 tctgaacctg cacaggcaga tactttggaa ggctggtctc tggtgggaat gtctcttcgt
      601 gtctgtgttc tcatgcgata aataggaggg aagacccaca ctgtgcctgg gatgtgtcac
      661 tgctgatgga caccgaaagc caggcaggta ctgcagggac ttcataggga tggcatttct
      721 ggcagcacct ctttattctt cattaggccc tttatttgaa ttctga
//
LOCUS       KCOD01001998             809 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 222563pyr ultra-conserved element
            locus uce-2306, sequence.
ACCESSION   KCOD01001998
VERSION     KCOD01001998.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 809)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 809)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..809
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="222563pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>809
                     /note="ultra-conserved element locus uce-2306"
BASE COUNT          255 a          159 c          159 g          236 t
ORIGIN      
        1 tccctctcct attcaaacag catatagtta gtgtttgtga cttttccctt gacaactaga
       61 taagaagata aatgcatagt ttctcttaat tagcctttct taattaaaaa caccagaggt
      121 atttgtgatc ataatgaact cttctgacag aatggtcact tgttcttctg gatgtcactc
      181 caagaaaatt agatttattt ttttaaaggg gtataaattc cgtgctaagg aagaaataaa
      241 tgatgcccac aaaattttat ctgaatgaga tggatgtgta tcttgtgggt tttagaatgg
      301 tgtggggcag tattagccat cattagcacc ccagtatgga tccaattcac taattactta
      361 tgctgtcttg gttcactgag atttaagtac caagtcaatc ccattatctg cagtctccca
      421 agcttgccag agtcatccgt cttttatgaa aaaaaaagca caagggttat caataggacc
      481 ctgaaatact tgggattttc ccacttcagg aggagacaag attagtcctg actaaagttg
      541 catcttctct aagctgctac tttggatgtg ataaaagtga atgctgacaa ttatccgtta
      601 ctacataaag agcaggagag agaggaggca agagcagcga gaagtctgcc acacacgcct
      661 gcatctgtcc tacggtcgca ggcagctttt catatcacct cagagctaca aattacaatt
      721 cgtctgttac aaacacatga taatatagtc agaaatcaga aattaaaata ttccaacggc
      781 ctcgggcctc ctcagagaga aagagagag
//
LOCUS       KCOD01001999             631 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 222674pyr ultra-conserved element
            locus uce-5044, sequence.
ACCESSION   KCOD01001999
VERSION     KCOD01001999.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 631)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 631)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..631
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="222674pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>631
                     /note="ultra-conserved element locus uce-5044"
BASE COUNT          129 a          130 c          154 g          218 t
ORIGIN      
        1 aaatatcttc aagtaaaaga cccatttata actctgcctt tgcccttaaa tgcatgccac
       61 atcgaatgtg gactttgcct tttgctctct tcttctctct atgcggaaag ttcccttgac
      121 aaatcttggg ctgaatctgt tttttcacac caggcacttg gtgctcggtg tctttcttct
      181 ctggagcttg catagcactg gtggtggagg tcttgaagtg ttggatgtgt gaagttggat
      241 ctccacagta tgttgcagtc ctctgaaagg gagctgggat cggtttgctt gtttgctggt
      301 gatggtgaaa aaaggctctt actggttcct gatgttcagt ttgatagcaa aactgagaac
      361 ttattgtgaa tgtgatcaca tcacaataat gacaccttgt agtgctaagt tctcctttat
      421 ctaaaaaccc gaaatctcct ctctggtttc agttcgctga cagggtagtc tgatgagtgg
      481 aagaattttt tcattccatt ttcctttgtg gtgctgttgc ttttttacgt ttgtgacctg
      541 gggagggaag cagaagctga gtttctgccg gtactttccg tgctgctcta atgccgttct
      601 ctcgccagac tcccagtggt tggttggtgg g
//
LOCUS       KCOD01002000             456 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 222779pyr ultra-conserved element
            locus uce-4610, sequence.
ACCESSION   KCOD01002000
VERSION     KCOD01002000.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 456)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 456)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..456
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="222779pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>456
                     /note="ultra-conserved element locus uce-4610"
BASE COUNT          107 a           98 c          119 g          132 t
ORIGIN      
        1 cctgtgcagg ggtcagtccc tgccaaggca agggcagcga atttcagaat gcaacgtact
       61 gccagagact ggaggctgag gagcagagga gtgggaggtg cacccaggct gcagggcttc
      121 catgatttgt cactcactaa ccattgtctt ctcttgtccc aggaacgagt ggaatatctc
      181 tttctcataa tttttacagt ggaagcattt ttaaaagtaa tagcatacgg acttctcttt
      241 caccccaacg cttacctccg caatggctgg aatttactag attttataat tgtggtagta
      301 gggtgagttt gtttttctgg cagcctttgg gagtgggtga atacttgaca tatgggttta
      361 gacattgctg tccatcgtgt tcctccgacg gcttgcaggg aaatctggga acacaatcca
      421 aagctggcct ggatatgctt aactgccatt tggttt
//
LOCUS       KCOD01002001             470 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 222885pyr ultra-conserved element
            locus uce-2136, sequence.
ACCESSION   KCOD01002001
VERSION     KCOD01002001.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 470)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 470)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..470
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="222885pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>470
                     /note="ultra-conserved element locus uce-2136"
BASE COUNT          139 a           99 c           91 g          141 t
ORIGIN      
        1 accaatataa atgttaccta acccttcaga tgcgagtaag aaggttttaa ttaagagaag
       61 ctccccttat aaccttcaga ataaaaaatt atctatattt atccacgaac tcccaggctc
      121 cctggcttta cgagcactca aggcagcccc gctggtgaat tctggccggc ccagtaatga
      181 tttaggtgag attaacaaat atgtcaatgt ctattttctg cttaatttaa aagcagcgtc
      241 tataaagatt tttgacttct gaaccctgtt ctcctggaag aaagaaggta acaatgagga
      301 ggggggataa agagtgatta tcccatcatc gatcgtttgt caggagcatt tcttattcac
      361 tggactattg taaaaagcta agctctcgat caatcccgta agccccctgt acaattaaat
      421 atcttggaat ggttttcttt ctttcctagt cagatcttga ggcctcaggg
//
LOCUS       KCOD01002002             457 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 222995pyr ultra-conserved element
            locus uce-4094, sequence.
ACCESSION   KCOD01002002
VERSION     KCOD01002002.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 457)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 457)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="222995pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>457
                     /note="ultra-conserved element locus uce-4094"
BASE COUNT          144 a           82 c           67 g          164 t
ORIGIN      
        1 aaagtttttg aaccttctgc agttatgaag acttgctgtg tttctgagct atttttgtaa
       61 aatgctcttc attgcagaac ttgaagaaat acaactaaaa acctaatttc ttttctcctt
      121 tttgcactgc aatcgacaaa gtgtgattaa taatagattt aaatttgcta agtgcattta
      181 ctcctttgtg ccatcataaa gagaatctat tactgtaaaa ttgaggctta gttccaaatt
      241 gcaccattat gaagttttct tccagcaatg ttttgtctct aatacacttc cctcattgta
      301 attccattgc aaacctgatg tctagcatca agtctcacaa taattatttt aaattgctac
      361 taggaacagt agtcctggtg ggatatatta ctaccattct aacaagatga atttcaatgc
      421 acttgtaacc atattacagt gtattctgaa aagaaga
//
LOCUS       KCOD01002003             452 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 223105pyr ultra-conserved element
            locus uce-5028, sequence.
ACCESSION   KCOD01002003
VERSION     KCOD01002003.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 452)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 452)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..452
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="223105pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>452
                     /note="ultra-conserved element locus uce-5028"
BASE COUNT          135 a          118 c           87 g          112 t
ORIGIN      
        1 cccctcaatc tctccccctc cttcccatcc ggcatctact catgcacaca tactctctga
       61 ctttttgttt ttagtagctg ctgccccata agaaatgcta tccaacagac ctggtgcctg
      121 tcaccgcttc ccatcacatg cctggtaatt aaactctgac tgatttattg actgacagcc
      181 aacaaatccc aacccagttt ttatgatata catgcctccc caggctaaat tcactcccca
      241 gctgaaaagg aggaaaaaag cgctacacac acgcgcatga tctggtattg gatgaagggg
      301 agacattttt cagcacaaca tctctttcaa gacttggaaa gggaaaggag ggggaggagg
      361 aaagaagtag taaacatcat tacttcagct ttaagattca tttgaaacgt ctcacgtaca
      421 aaagagctct gaaggggaaa acaagacgtg ct
//
LOCUS       KCOD01002004             408 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 223210pyr ultra-conserved element
            locus uce-5933, sequence.
ACCESSION   KCOD01002004
VERSION     KCOD01002004.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 408)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 408)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..408
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="223210pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>408
                     /note="ultra-conserved element locus uce-5933"
BASE COUNT          104 a           93 c           75 g          136 t
ORIGIN      
        1 tatactgctg cacttttcat agtccatgct gcccttctgc taaatgctgc cttctgtctt
       61 gcttagttaa tggttacctc cttggctggc ctagcaggag ggggctggca ggactccacc
      121 ccagctcctc aggagcgttc cacacaacgg ctgtggaagt gtacaaagtg tcaacctcag
      181 cgtagttttt aacctggagt gatagcttta ctgatttgcc actttactac tcttgttaat
      241 gaatttttaa tcttcttaat gacattaaac acggaaagta attaaggaaa acaagtttga
      301 aactgctgac ttaaaccctt tattcagaac tatttaatgt agaattaatt tgattttgcc
      361 cattattcaa atgaacacat taccttcctg tgcattggcc tcttttcc
//
LOCUS       KCOD01002005             699 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 223320pyr ultra-conserved element
            locus uce-573, sequence.
ACCESSION   KCOD01002005
VERSION     KCOD01002005.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 699)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 699)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="223320pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>699
                     /note="ultra-conserved element locus uce-573"
BASE COUNT          207 a          132 c          147 g          213 t
ORIGIN      
        1 ccttttgttg cacagacgca gtgctgcttt ggcagcagtg ctggcaatgc tgttttctag
       61 cacaagatca ctgagtgagt tcgtagtata tagacagagc aaggcaaagt gcaaacgtac
      121 catttaccaa agctattcaa ttaaggaaaa gtccctacaa agaaaatggt tttatagcat
      181 gtcatgaaat acttgccttt tcctttaaag aagactgttt aaggaggatg attgtagagt
      241 acgtaccact tctaacagat ttgctgtgca gaagtacata agtgtgagtg atgtagaggt
      301 acttgtttat tatagagcac atttcaatgc agtaatcata aatattgcta aggttgtgct
      361 ctgttgaaat atgacctaca tactcttgat tgtttgtgtt acgtgatttg tctgacaccc
      421 attacattct gggtaatggc agccatttgt tgctgtgcac agcaggctct tttgacaaaa
      481 gaaaataggc agcaataaaa aagctatagt ctgaattaca ttctgctcag cgctgcactg
      541 ctgagagttt gtgcaagtgt gttaacaatg ctctgaactg cctcttgtca gccttcagcc
      601 tgtaatggcc atctgtcctt ccataaatct gtcaaaacct gctaagttca agagagagta
      661 cagaatatac cttgtactgt caacacttaa gtgtacaca
//
LOCUS       KCOD01002006             773 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 223427pyr ultra-conserved element
            locus uce-917, sequence.
ACCESSION   KCOD01002006
VERSION     KCOD01002006.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 773)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 773)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..773
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="223427pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>773
                     /note="ultra-conserved element locus uce-917"
BASE COUNT          243 a          136 c          123 g          271 t
ORIGIN      
        1 attttcaaag ggcttttttg ttttatgaca aatgaatgta aaaatgtgca tgccttgtgg
       61 cctagaggac aaaacagtag gatcaatgtt ctttttgtac tctatgaagc ttgagattaa
      121 agtccccact gataaactga acattcttta aaagtgacca gaagcaaaca gtgtctgttt
      181 gctgctactt tattagaaag ataccactga gaatagctaa gaatactatt tgatcttaaa
      241 caggttgacc aaattattgc ggttggctcc agtacatgag atgccttctg caaattattg
      301 tttctggtta taaaccttta taatatctca gaatgaatta tgtatgtatt tcatgttttc
      361 ttttctttta tcagccttga tgttctcatt tcaagtttca ccctagcctc ctaataatgc
      421 aatattgagg ccattcagac actaattatg cctccatggc tttcttgaaa tgactaaatc
      481 agcatcagtt ctataattat cattagtaag tttgtatctg tgcctcacac cacatgaaaa
      541 gcacaacttt aaatgattta tgaatatatg catctgacat cgaatgtgct ctttcttcta
      601 catacagaag gcatagagat acttcaacat atgtacacct atatgtatgt tctcaacttc
      661 actgagctct gctgggtatc ttacctgatt gtataaaaat tttcgtaata tgtgtgagat
      721 accatcaaaa caagtgtatt tatttaaata gtacaaatat aagcaagtgt tca
//
LOCUS       KCOD01002007             310 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 223535pyr ultra-conserved element
            locus uce-1722, sequence.
ACCESSION   KCOD01002007
VERSION     KCOD01002007.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 310)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 310)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..310
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="223535pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>310
                     /note="ultra-conserved element locus uce-1722"
BASE COUNT          105 a           48 c           48 g          109 t
ORIGIN      
        1 taattgtaag cttaattgct ttcaattttc aatgtataat ggaacattta attttaaaca
       61 attaaaatta tttgttttac agcaaatatg tattatctgt cttttacacg gcttatggtg
      121 gatgaggaca aaaactttgg aatagcaagc taacactgaa aaaaaaaatg acaaattaat
      181 ctgtcctatt atccaggcta catcaggagg ttggacttca atgcagtaca tttctataaa
      241 cagtttgtgt aagaactttg gttcgttatg cttgattccg cactttttca actcataaca
      301 cccagagtat
//
LOCUS       KCOD01002008             570 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 223641pyr ultra-conserved element
            locus uce-4735, sequence.
ACCESSION   KCOD01002008
VERSION     KCOD01002008.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 570)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 570)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..570
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="223641pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>570
                     /note="ultra-conserved element locus uce-4735"
BASE COUNT          181 a           87 c          118 g          184 t
ORIGIN      
        1 aggaaataat aatttgggta ttttgcatgg attattgaat tagctgttta aaattgcatc
       61 ctgttcattc tgagacataa ctattgtcta tcagtattga gcattgatgt gtatgaaaac
      121 tttttgccac aaaggatcat tattaattta ttgagaacaa atgaagtttc ttttctcagt
      181 tgttttgaac tttaaaccta tatacctgat aggaaaggga cactctaata gtacttccct
      241 tgtgtcctat tactggatgt ttatggagta ccctgcatta tccagggagc tgacaagatg
      301 acagagagtc atttggagtc aagaaatgct gaaagacacc attaaaatgt cttgcaggga
      361 gggttccaac aaggacacat ttggatgctt tcataaatgc tcactaatat gaaaagacga
      421 atttattgct gacgactgtt tttcaaagat taaaaggcag gacagaggag gggcaaaagt
      481 tggttgttaa tgcttactcc taatcctgca gcatttagaa atgtttagga tggatagctt
      541 cattctgctt ccacttagaa atgaagcaga
//
LOCUS       KCOD01002009             677 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 223746pyr ultra-conserved element
            locus uce-2729, sequence.
ACCESSION   KCOD01002009
VERSION     KCOD01002009.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 677)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 677)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..677
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="223746pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>677
                     /note="ultra-conserved element locus uce-2729"
BASE COUNT          146 a          126 c          126 g          279 t
ORIGIN      
        1 agcctataaa tttagtctta ctaaatgact ttgatgtcta tgcacatgga gaaatcagtg
       61 gcttaaccca gttccttttt tacacgttta atcagttgtt taatggcaat tgcacgcagc
      121 ttgttctcgc tctttctctt tctctttaaa ttttagattt caagttttgg ttggttgctc
      181 gccattcatg tcggtctgtt tttttagttg ttgtgaaacc tttctgtaat tattttgctg
      241 ctgagtttct tctgcctttc tcttcacctc ctcatttttt gtcttgcagt cctgttactc
      301 tgatcaactt ctggccagta gattctgcgt gagtactttt gctgaagtgt gctgctgctg
      361 ctactgctgc tgcgctccct cacttatttc tttgtttagt tttacatgag atcatttcct
      421 tcttttttat ggttatttcc tttgatgcac tctctgaagg aatgttttga tcccaaataa
      481 gtagaatgag ataaatcctg gaatttccag cagtcatgga ttttgtactg ctggagtatg
      541 tatttttaac aggggtttca tgcagaccta ctaatgctta tcaaagtttg ttgtttaaaa
      601 gccttgaata agtgtagatc cctctgaatg tgtacttttt gaaaggatat ggatttaatt
      661 cagtttcagg aatgaca
//
LOCUS       KCOD01002010             704 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 223856pyr ultra-conserved element
            locus uce-7967, sequence.
ACCESSION   KCOD01002010
VERSION     KCOD01002010.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 704)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 704)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..704
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="223856pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>704
                     /note="ultra-conserved element locus uce-7967"
BASE COUNT          212 a          141 c          138 g          213 t
ORIGIN      
        1 ttttaagtgt gtatttacac aatctcagat atcagagctg gcttcacagt ccaaaatgct
       61 cagaaggcag cagtgtactc atgcagcctt ttattagctg aatcatcctt gctgtagctg
      121 acctagggtc ttttgtacct aatgttttca gggagataat tttcacagca tcagagagca
      181 aagtcaatcc taggtcactc ttccagtgta gtttcctttg tactaaatcc tactttcaag
      241 aaaattcttg ccatggttca atggtattta acctatcata taatatccag gtttactgtg
      301 ttagaagaag cagaacagta ttaagctttt cccacaagcc tgtgattgca tttgacccag
      361 taacctgtat tagattaaca tttattctac aactccacag caagccttgg acctggctga
      421 gcagcacttt atagaggaca ctaaccattt ttacaagtgg agcaggaaaa gggaattgaa
      481 tctgagggag taattccaaa caagtatgtt gctgcagcgg ttaaattgtt tatacgagga
      541 gttggggaat tacatctgac tgacctctct ttttatctgc ttaaaagaca aagtgcaggt
      601 ctccatggca agtgctaact tctgcggaat gcagtataaa aatgcatcat ggcaatagga
      661 cctcaatccc cataccttca aaggaattta agcaaaaagg tttt
//
LOCUS       KCOD01002011             406 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 223963pyr ultra-conserved element
            locus uce-3419, sequence.
ACCESSION   KCOD01002011
VERSION     KCOD01002011.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 406)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 406)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..406
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="223963pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>406
                     /note="ultra-conserved element locus uce-3419"
BASE COUNT          127 a           88 c           61 g          130 t
ORIGIN      
        1 tgctgggttt ggtgttttgt gtctggggct ttcagtctat ttcaagtgaa aatatgtaat
       61 tccaggccac tcttccaata catcacagtc attttctgca ctttagttgt ttttctctcc
      121 atttttccca caaaataaaa catcattaca gcaggtttaa agtgcacttt agtgcctgca
      181 atcttcccat gctattcttt aatatttcat cattaaatag caaaataacc tgatatgatc
      241 ctaatttagt gccaattaca ctgcattgat caaagtgacc ttttcatact ggagcacaaa
      301 aatcaatccc gctgcacaac aaatgtcagg gggatgagag caacatataa tctgtgacaa
      361 tcaaaacatt acttacaaat gaaatcacca atgacctgca tgccaa
//
LOCUS       KCOD01002012             736 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 224179pyr ultra-conserved element
            locus uce-553, sequence.
ACCESSION   KCOD01002012
VERSION     KCOD01002012.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 736)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 736)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="224179pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>736
                     /note="ultra-conserved element locus uce-553"
BASE COUNT          215 a          165 c          147 g          209 t
ORIGIN      
        1 tttcttagct attagctctt tattttgcca gtcctcagcc tgacccagtc tgtgaagctg
       61 caagttggca gctgtgattg cagtacagat ttcacacagt gtaattactg cagtgacact
      121 aggactgaga ggtacaaaga aaaaaagagg ccctacaggt tattagcact aaacactggg
      181 agaaatcaaa cggagagtca atgcgtaatt tcgaggccta tcaagcctca tcaggaacag
      241 cagggaggaa agtgcttcac ttcatcatct cactctctga cttttgttga aaattacagt
      301 aattaaaaaa gagctaagta cttctcaggc aaggggtctt ttctttaccc atcacctttt
      361 agttggctgc tgattttgtg tgaccttttt cttggctctg tctatcgcag tcaacacaga
      421 tctttgttga atagctctct aaaacctaat tactatctgc tgggtgattc agtattgatc
      481 agaaaaggtg gcacagcaaa ataagagtac cagcactgtg gccccagcaa tcgaaaagta
      541 attctagccc catagaaacg tcccctccat cccacttatt agaagcagct gtgatgttgc
      601 caaatcgata cacaacattg aattgcttct ttgactaaaa agctcctcca gaactcgggc
      661 acaatcagtg gcctctgact tcaaaggccc taatgcagta tttgagtgaa taaattccct
      721 gttggcaaat atttct
//
LOCUS       KCOD01002013             511 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 224280pyr ultra-conserved element
            locus uce-6158, sequence.
ACCESSION   KCOD01002013
VERSION     KCOD01002013.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 511)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 511)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..511
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="224280pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>511
                     /note="ultra-conserved element locus uce-6158"
BASE COUNT          115 a          123 c          151 g          122 t
ORIGIN      
        1 agccgtgtct ccagcccggg aggcccgggg aaggaaagcc ctggaggtgc ccccaccgcg
       61 cggtcccaag tccgctttag cagtcaggca tggagttgaa tggaagttgc attcttttgc
      121 acgctctgct ccaggaggca cttttctttt ttccatggaa gggaaatagg tttgagagca
      181 aattggggga aagggagaaa taccagggga gtaagagcca cattatgttt ccattttcct
      241 ttaatgaagg ccctgtggag gtgtatttga aaacacaggg tctcctatgc cttcaaggag
      301 ggtgagaaca ctgtgctggc tggttccagg gccatatgca gcgtatagtg gccaatgaaa
      361 cggggcctgg ctcgttctct tgcttgtctt ggcagcctgc tccatggctt gcattaccag
      421 ccctggaaca caaccactgc caaactgtgt gtgtgtgtgt tggactccga gagctcagca
      481 gaagcaaatg cttctgcagc tcagaccagg a
//
LOCUS       KCOD01002014             780 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 224390pyr ultra-conserved element
            locus uce-7643, sequence.
ACCESSION   KCOD01002014
VERSION     KCOD01002014.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 780)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 780)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..780
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="224390pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>780
                     /note="ultra-conserved element locus uce-7643"
BASE COUNT          235 a          142 c          167 g          236 t
ORIGIN      
        1 gaagtcacca ttgtaaccaa ggctggagtc tgagacagaa ttatgcacgg aggaagagat
       61 tgtacaaaat attcatttaa tttgaatatg tataggacgt gaatgaaagt gttgggccaa
      121 atcctgctct catttacatt aatgcagccc cacaatgtct gttgaaggta gaatttgatc
      181 tgacattagc acaaactaac ttttacattt gccagattct tatttgctca cagcgtgtgg
      241 ccagccagaa atataaataa atcaaatctg tttctaggaa gattccagca accctttgaa
      301 actttccttc tttgcattac aagaaaagaa ggggtagaaa ggggagagga tggagggtta
      361 cataaatgag agcaggtgcg gtcgtgcaga agtaactatt cagcatatgt aagtgcagtt
      421 ggaaaatcat tgtcttgcag agaatacttg aaattggtcc ctaatggcct tggtttttgt
      481 catatggtct tgattatcag gctaaaattg cattgccgat gcctttagtg tgaatgagat
      541 ggatgaataa ttattacgtg cgctgaatac ctctctgcga ggaggaacca ggacatcccc
      601 tggtcaccac agctaccatt tcaccttgct gtcaagaaaa ctgcaagtgg ccaattcatc
      661 acttccttat tgttcttaaa atatatgttt ataataataa gtgctcataa aacctcagtg
      721 ttgcgaggtt atttttggga ccccatttac aaagaccttg ctttatcttt gtattcgtgc
//
LOCUS       KCOD01002015             636 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 224500pyr ultra-conserved element
            locus uce-1314, sequence.
ACCESSION   KCOD01002015
VERSION     KCOD01002015.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 636)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 636)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..636
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="224500pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>636
                     /note="ultra-conserved element locus uce-1314"
BASE COUNT          155 a          152 c          115 g          214 t
ORIGIN      
        1 tggccccacc ttgtgcaact tcacctcata actccggctg tgcaatttga gctcgatgct
       61 aatgcattga ttttgcttta atagaatttt gttgtcaatg gtcggtgctc agcacggtgc
      121 aggcttcaat cttaccccat ctgaaggctc tgctcgtttc cagttgagct ccgttcattt
      181 ccagttgaat aggttaagca aagacagacc tcactgttct caattcactt tatgatcctc
      241 ccatcataaa aaataatatc agcaccttgc ttttcatgtc agaactacat ttgagctgct
      301 attccctatg cccatgagta aatcccataa aagccgccct gttgtactgt cgctattttt
      361 ccttgtggat gattgattga tggatgagtg ctgacacttc aatgaagcta tttcgactgc
      421 catctctatc cgatgatgtg aggggtatat tttctgtcca tgcctcatta cttcagaatg
      481 acattcctgg aacttcattt actttttccc tccttccctc aagcgccata ttttttccca
      541 tctaggttat gcatgccata aaaaaagcaa tttgctatta tatgtggcat aagggcaaca
      601 ctttccctag gaggtaaata agaagggcct tttttt
//
LOCUS       KCOD01002016             434 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 224606pyr ultra-conserved element
            locus uce-3976, sequence.
ACCESSION   KCOD01002016
VERSION     KCOD01002016.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 434)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 434)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..434
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="224606pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>434
                     /note="ultra-conserved element locus uce-3976"
BASE COUNT          118 a           97 c           89 g          130 t
ORIGIN      
        1 gttctccctt cccctccact ccggggtttg gaagtgtggg tttgtcacca ttctcgtggc
       61 tttcagagct tttttaacca gcccacaatt gggctggttg gctaatggac catctccttg
      121 ataaacttcc ggggagccca ggacgagcct gcttctttaa aagtttatcc ctgtggcacc
      181 atcatgtaag catccatatg ggacagtaaa aatggaagac gacacattaa atgacattat
      241 tataaaatgc aatactcttg gaatgatccc ttattaaatt aggctctatg atctgagatg
      301 aatttccccg atccctaatc catcaccaga gaaatattaa aagataggtc tcaactggta
      361 ttagaatcgc actcagtctc tactttcatt attttgaatt agggtgctac tggggggaag
      421 cctcttaatg agaa
//
LOCUS       KCOD01002017             340 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 224713pyr ultra-conserved element
            locus uce-2769, sequence.
ACCESSION   KCOD01002017
VERSION     KCOD01002017.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 340)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 340)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..340
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="224713pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>340
                     /note="ultra-conserved element locus uce-2769"
BASE COUNT          100 a           78 c           48 g          114 t
ORIGIN      
        1 tccttagaaa tcagcctggc catggccata ctcatctcca taatagcaca atttccaatt
       61 cacgcctcat tttcattaat gtttcttgcc ataaattttt aagcatatga taaaaaattt
      121 ctgaagcggc ataaaactaa catgaagagg gagttcatta gtatgtgacc ctaattagaa
      181 attccatatt aacttcccat ttctacttgt gcatgtccaa cagcagcagg cctaatatgc
      241 tgtgtaccag ttgtacattt gttttaaggg ctctctccct tactcatttt tacaccattt
      301 ctatgtttcc cctgctattg aataagtcaa cagacaactg
//
LOCUS       KCOD01002018             419 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 224819pyr ultra-conserved element
            locus uce-6969, sequence.
ACCESSION   KCOD01002018
VERSION     KCOD01002018.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 419)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 419)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="224819pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>419
                     /note="ultra-conserved element locus uce-6969"
BASE COUNT          124 a           79 c           78 g          138 t
ORIGIN      
        1 aaaagaaatt tctaaaatga agacatagca gtattcttat cttttttcct ggtacgctgc
       61 tctgtgtctc ataaagattt ctggcagagt gagaaaacct ggtcagtatc agagtctttc
      121 ctgggacctg tctgaagtgt cgacaagcag ctaagctgaa tattaataca ctctccatca
      181 tcaaaagctg ttgcataccc aaaggatgaa aaatatttta atcagctttc agcttgtcta
      241 gtggaagtca gtttattcct ttgggattat acatctatgt gctcaatttt tgtcttcgcg
      301 ctctctctcc gtacatatta cttttgaaac tagcagcaaa gagcctaaat ctgctgttat
      361 gttgggaaaa gccagctaat gctgtgattc aattacagta ttttacattt aagaaggaa
//
LOCUS       KCOD01002019             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 224927pyr ultra-conserved element
            locus uce-4507, sequence.
ACCESSION   KCOD01002019
VERSION     KCOD01002019.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="224927pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-4507"
BASE COUNT          251 a          126 c          129 g          196 t
ORIGIN      
        1 aggtcaccaa atttaaatta aagtgacctc ttttaaagca cattactaaa agtactatgt
       61 ggagggaaat ttaatatgaa tggttaaaat gcatggaatt cagattttac tgtcaaacag
      121 ctcaattaaa caaattgaat ttttaagcaa caaaagggaa ttgaatcaaa ttagaaccag
      181 agtgggatct gaaatgtgga catttatgag tgatagtcac agggccctcc agcagtgagt
      241 tttctttatt tgttgcctca gcagttagag gggttggcag gctgcaacac aaaaggataa
      301 aaatgttcac cattgaaaca cagtttttgg ctcccaataa atcatctgtc acttcatcac
      361 agcccagtag ataatgagca ataaagtttt cacactcagg caatgaggaa gcagacacaa
      421 gaaatacagc taaagctgct gtctctcttt tctgtaaacg caaggtgctt tgtgtaataa
      481 atgacctctg gatttctgga aaagaataat tccagcctcg gtaaaataaa ccatttggcc
      541 aaatctaata acattactta gttcctttaa tgaaagaaat aatcacatta tatatatgag
      601 ctacagccat ctataacagg aagagattcc agggtattac ctctgaagtt gtctctctat
      661 tgccagcaaa gcacattgct gaaaatacaa taaagctgca ca
//
LOCUS       KCOD01002020            1012 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 225037pyr ultra-conserved element
            locus uce-736, sequence.
ACCESSION   KCOD01002020
VERSION     KCOD01002020.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 1012)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1012)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1012
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="225037pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1012
                     /note="ultra-conserved element locus uce-736"
BASE COUNT          307 a          199 c          177 g          329 t
ORIGIN      
        1 taaatttcag ttttctacca gctctttgaa acaataaatt tttgtcttca ctctcagaga
       61 ataaagcatt actctctgtg agtgatagca atctgttttt ctgtcctagc aggaatatat
      121 taaccaggaa actctctgta catgattata tttcttagct taaaagagac gaccattaaa
      181 atatatcagt gaaaaataac atcttccttt aaattaacta atatctacgt ttaatgaagc
      241 tcagtttata gtgatggatg aagtgctttt ctttcagcct aattatgtgc acagctttca
      301 gacaacagga gtgtctttaa cattagataa gaacctaggc ttttatctca atcaatagtc
      361 tttagccttt gaactcatgt cagagcaaga ccagtccgtc acattcagtt ctacctgacc
      421 tctttcttct taatgcacac tgccatttac agaaggaaaa cacacagata tatatgacca
      481 agtattcagg gcattttgtg tacaggggga tgggttttat ggctgtagaa atgggtgact
      541 gaaatgatga tgttaaaatt ttcttgtttc ctttcactgg gctttgtgta tctcaaagga
      601 gccccatatg gtgctctttg tccgtgtcat tacctcgtta cagccgctgt ctgccagcca
      661 aaggtagaac gctgcagctg tagacagcga tacaactgga attgtctaag gtcaacagtg
      721 ccgtaattac tttaaaatgt cagcgtacaa taaaatacaa cagttcatct ggcagaaagc
      781 aaattagctt tgaccatagc gtaattaccc ttttctcagc accattagaa gagatcaaat
      841 ctccacattc agtgtttgag gaaaggccat cagagtacac tctacctgac aaggatgcac
      901 atttgccatt ttgagatgta attaattgtc cctataatag aaatttttat atttgactct
      961 ggaattgaaa tgcgtaataa cctggcttct tcatatttaa ccatttctac tc
//
LOCUS       KCOD01002021             746 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 225146pyr ultra-conserved element
            locus uce-3455, sequence.
ACCESSION   KCOD01002021
VERSION     KCOD01002021.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 746)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 746)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..746
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="225146pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>746
                     /note="ultra-conserved element locus uce-3455"
BASE COUNT          209 a          157 c          135 g          245 t
ORIGIN      
        1 ggttctctga gggaagcttt aatttgtgct tagggcttca tggcagcctt actagcaaag
       61 gtgccttggg gacctgctga attcatattg ctgtgacacg cagccgtgtg tgtgcagagg
      121 ccacactaag acagataaat caaatagtag catcatcagc ttttctatta tctgccccac
      181 tttgtgccaa tttcctccag cttccccaac acctcttgct ttgctgttct tccttaagac
      241 atgggatggg gatttgtcaa agtcaatgag cactttatta cagtgagagt actcagtaat
      301 gaacaattca ccaatttaat gagattctgt agatctgtct ccagcctgtc catcaagttt
      361 cacttctata aagcaccctg acactaatcc tctggcatac ccaatcttca ccctgggctg
      421 aatattagat tcttccatgg tatattgcat taccactata accttagcaa aaatgatgaa
      481 cttaactaca cttgaggcaa tatagctggt ctgatttgat tttcttctat tgggttgact
      541 atgagggaat tacttattta ctaagataaa gcacagtttc ttattgcctt ctgaatgccc
      601 aaattggtaa atatttatat gtgtctttta atccattctg gggacctgga atatttataa
      661 tatttattcc tggtttcaca aactgaatta aaaagatgca tgcacatttt gcctgcagca
      721 gaaaactagt taaaaaaatt cttcag
//
LOCUS       KCOD01002022             756 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 225259pyr ultra-conserved element
            locus uce-6020, sequence.
ACCESSION   KCOD01002022
VERSION     KCOD01002022.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 756)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 756)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..756
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="225259pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>756
                     /note="ultra-conserved element locus uce-6020"
BASE COUNT          228 a          151 c          145 g          232 t
ORIGIN      
        1 tttttgaaag ggtaaatact taatctagca tgttatttcc agttaagtct tgaaatatct
       61 aactgttgca ggtgcctcat agataattaa gtagcttagt gtgaaacagt ataatgaaac
      121 ttttaaaaag gcaataggaa caaatttccc acaacaccca cagtgtattt ttcacttacc
      181 cacaggagac atctcaggaa ctccagcagt gtagggacca tccagaaatt ttggctcatt
      241 gtcattgatg tcctgaatct taatgacgaa ctcagactct ggctccacgg gtttattagt
      301 cagcctatct agtgcttgtg ctcggagcgt gtagtaggcc tgctcttctc gatccagcct
      361 ctttgtagca tgaatatccc ccgtgttctc atcaataatg aaaatggaac ttgccccttc
      421 gcctgacaag atgtatttga tggaaccatc gcctttatca acatcagagt gaagctggtg
      481 aaaaattgat gagagatgag attaacttac aagagagtca gtggcatgga gatataattc
      541 ctatgttgag caggagtata tgaaatttta ttgttcctgg aaagataagc tgaatgttga
      601 tcacacacag catgtcattc gaatctgtaa tttgctcctt taagcaacaa aacttcattc
      661 tcatgctaga tttttacata ggcaaacaca tgtctgtcac ttttaacaac attgttcact
      721 tcagcttatc atcctactga agggtgagac ttcaaa
//
LOCUS       KCOD01002023             737 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 225368pyr ultra-conserved element
            locus uce-2591, sequence.
ACCESSION   KCOD01002023
VERSION     KCOD01002023.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 737)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 737)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..737
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="225368pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>737
                     /note="ultra-conserved element locus uce-2591"
BASE COUNT          230 a          151 c          123 g          233 t
ORIGIN      
        1 ttgttacttg caggatacca cacaagttga gttactaaga atcaggagga aaaagaaact
       61 gctcagtttc ttcttcactg tgtgccctcc ccacaccttt ctactggttt cataaagaaa
      121 gagtgtaatg gttaatctat tgtttattca aaaccaccaa cagaagttaa tagacagtta
      181 taaattaatt gagtgcgtct gtagtgctat ctcctcattc atctcgctta ttcgatttag
      241 ctctgttagt gttccatatg gtacagtgcc cctgctgcta ggaacagtca ttcattgccc
      301 cctgtaacaa caggaagcta atagtttaac tgttcctcta aatttgtttg acaaaactga
      361 catttagtac gccacgtcac gttgtcagta atctgcaatt tacccttagg caggcagtag
      421 atgctcattt tatttacctc tcgtagttaa aagcataatt aatattccac tctgaaacaa
      481 agattagaga tttgacaaac attgcaattt aaattctcca ttatagaaaa cattaaaatc
      541 aaacacacac acaccattgc ataaaggaca tgtgtagctg taatttaact ttttagtctt
      601 taataccaca aactaatttc tgctgtcagt ttaatgaggt ggaaaacaca aatcttgttg
      661 cactctgtgc acacaggctg ggacagttag actgcagaca gcttgaatca gtttgtctca
      721 cgatgtttca gtcaaaa
//
LOCUS       KCOD01002024             531 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 225473pyr ultra-conserved element
            locus uce-3597, sequence.
ACCESSION   KCOD01002024
VERSION     KCOD01002024.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 531)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 531)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..531
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="225473pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>531
                     /note="ultra-conserved element locus uce-3597"
BASE COUNT          161 a           97 c           83 g          190 t
ORIGIN      
        1 tacaccttga ctgactcaac gaactaaagc aaagctgctc tttcttgtac ctgtgctctg
       61 agcaaacctg caaatctttt cctgccatat ttagctcaca aacacactta catatacaaa
      121 acttcctgca atacatctca gtgagtccac ctagtttaca actcagaaat tgtttgtgaa
      181 acatttgtct gtacacattt tatattttgt acatttttga tgtaacatat cttgtaaata
      241 gacagaaaca gtgaaataaa tcatctgaaa atttttgtag tctttgtaaa accctaataa
      301 taagtatttg gtgtcatcgg acttaactgg atgatgtatt ttctattggt ttattgttct
      361 ctagcttgta aaccagcttg ctgcaggtgt gcacactgta tctgtctaaa ttattacttt
      421 gccattaaag tggaattatt tattgaaaac acagtctggt gtttttgcag tcaggaccac
      481 ttaacatttc aagtgtatga acaaaactga aggatgtgat ttttctgtat t
//
LOCUS       KCOD01002025             490 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 225579pyr ultra-conserved element
            locus uce-7695, sequence.
ACCESSION   KCOD01002025
VERSION     KCOD01002025.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 490)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 490)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..490
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="225579pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>490
                     /note="ultra-conserved element locus uce-7695"
BASE COUNT          143 a           85 c          118 g          144 t
ORIGIN      
        1 aaaggtttgc catggctaag gaatgtggct ttttggatag ctggtcaaca tgttaaaaga
       61 agtcaggggg ttttgttaac aggtgttggt aagtaataat agtataaacc catttaatag
      121 tatgtagtct gttgcatggt tacccttaaa catggattca aatggagtga aatgtagcca
      181 gaaggcagct tggttccttg ccatggcaaa ataacgagca gatcccagca gttgacgtcg
      241 catttgtaaa gctgctttgt catgaagtaa tgaagcagtt ggagagagat tcgcctgttt
      301 taaaggaact gactaacaca agtatcccgt ctatatctga atgctgtctc taggtgtaag
      361 ccgtggtttc gccttcgtgg agttttatca ctttcaagat gctaccagct ggatggaagc
      421 caatcaggtt gcttcactca ccaagtctag atattcctga aaatggaaca agtctgtaca
      481 gtttaacaaa
//
LOCUS       KCOD01002026             547 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 225684pyr ultra-conserved element
            locus uce-3903, sequence.
ACCESSION   KCOD01002026
VERSION     KCOD01002026.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 547)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 547)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..547
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="225684pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>547
                     /note="ultra-conserved element locus uce-3903"
BASE COUNT          162 a          135 c          101 g          149 t
ORIGIN      
        1 agtaatagag ggattgatta ttcgagtctc tgaaccaata tattgggaga ggagttaaat
       61 ctttctccca ttcccttaca ctttgtataa aacctgccag cccctctgag taattaatca
      121 atcatggaaa cattgaccct agttttggac agggaaagta ttaaaaaaaa gtaaaagcaa
      181 aatcccatac cccaccaaag acggacatct gtttctaact tcagcttttt atttttttat
      241 ctttcatttt ttttgttggt aaatctccca gacaacagca gttctgtaga gagtttaaat
      301 atgaaggaat ggcaggacgg gctaagggca cttctaccga acattaacat caactttggt
      361 ggactgccca atgcttcttc cccacgccaa ccacagtgta ccaacgtcca acactgccac
      421 caccgacagc ctgagttggg acagccctgg cagctggatg gaccccgcaa tcatcacagg
      481 taaccgtttc tcactccttc agctccactg gcaaaccatc aaatgggtat ttggcacaaa
      541 ctgattt
//
LOCUS       KCOD01002027             621 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 225797pyr ultra-conserved element
            locus uce-2975, sequence.
ACCESSION   KCOD01002027
VERSION     KCOD01002027.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 621)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 621)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..621
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="225797pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>621
                     /note="ultra-conserved element locus uce-2975"
BASE COUNT          173 a          135 c          137 g          176 t
ORIGIN      
        1 agtaatttta cataaaatat gaattctgta tgttatacag aatacagaac cattgacatg
       61 aggataggaa gggactttta tttttctccc tctgtttgag aacaagcgct caggacctgc
      121 cgccctgtcc tagcagggtt tttgctcctt ctgtgcactc ctcacttggc tgccgttcca
      181 tctgactcct aaagaagcga gtgcaaatta aagaaagaat gcagccctaa cgcctacacc
      241 cagaagcttt caaaacagaa ggctgctaca cctgtgggga tagaacaagt gtatcagtgt
      301 cctggactct gccctggctc gtctgccttt gttagctgga atgtgccgat gaaacaatca
      361 ggtgcagtag gcgcgtggca gcctgcttaa aaaacgattc tttagagaca gggagtgggc
      421 tgtgaatcat gcatccacat aatctgatga taacaatttt aaatgtggtg attagtgtat
      481 aatggaaagt attgtgctat ttggtatgat ttgtctgcca ctgcactacc cagtgtttaa
      541 aaggtcccat cttccatgca aaacctgatt cattctagta gcaaaagaat aggtgtttag
      601 gtacttcctc actcaccagc a
//
LOCUS       KCOD01002028             833 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 225901pyr ultra-conserved element
            locus uce-2012, sequence.
ACCESSION   KCOD01002028
VERSION     KCOD01002028.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 833)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 833)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..833
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="225901pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>833
                     /note="ultra-conserved element locus uce-2012"
BASE COUNT          251 a          132 c          158 g          292 t
ORIGIN      
        1 ttctctggtc aaacttttaa taaataaata ttcctctcat atcataaaca ttagaactct
       61 ttgtttgaca atatggaaca tttaatgtag cctctttcat gctttcctgt gtagcatatt
      121 tctctttagt aaaattaggg ggtggggaga caaattgcag taataagggt ctgaaaggtg
      181 tgtaaagcat acggcaaata aagtaatttt ccagtgagtc tgtgatattg ccatttcctt
      241 tagcagcgtt gagtctcctt cataatagaa gttgctgagg gcttagagta ctagaaaata
      301 taaaatacct aggggacata ttccagtact gtacattaaa tttgaggatt ttacatgtga
      361 taaagtatgt cagtgttgct tacagggaat tccagtgata cctcagcttt cttggactta
      421 ttataaatcc tttgttggaa ttattgcggc tggttcaata attcagatta gccctcatgt
      481 ttattaatgc actacatctg tgcaaacaac atgtcaagca gagagtttat tgtaattgcc
      541 tgagcaaaca gaacctgaaa gaagcaattt ccagttacaa tgtgctatga caagtaatga
      601 ggtaattggc attctgtcct gattacttcc accttccttt tcatcaggtc tatattgtgt
      661 gtgatagata gttttataag aaatgaaggt gtttgataat atggtctgct gctgcttaag
      721 gttagtgatt aaagacaatc ataattttct ctcagagatc ttattagctt taacattatt
      781 tattcatatg tgtaagatgt gggcccagaa tctctctttc agtactatac ata
//
LOCUS       KCOD01002029             706 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 226106pyr ultra-conserved element
            locus uce-7740, sequence.
ACCESSION   KCOD01002029
VERSION     KCOD01002029.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 706)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 706)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..706
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="226106pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>706
                     /note="ultra-conserved element locus uce-7740"
BASE COUNT          190 a          134 c          133 g          249 t
ORIGIN      
        1 ttcatggcac aatatgctgg ttagaaaatc tggctgaaag ttgaactggt gctttgtctc
       61 agaagctttg cttttagagc ctgggtaatg tgcagaattc tcaagcgaaa tctggggaga
      121 aagcagttac acatttaagt cattgtatat gatttaattc ataaggatgt acaatagatt
      181 tttccaaaag taaatgcaca gtttctttca ggcagaagca ccagttcaca ttacattagc
      241 tattaaaaat ctaatgaata tgtctttatt tctttctcgg gccttctgat gtctattctt
      301 caattctctc atctctgatc ttcaaccttt gacctcacct gcctgatcag atggtgtttc
      361 ctaaaatcaa tcatgggttt ctctctgctg atcagcagct cattaaacgc cgcctcatta
      421 aggtagtgct tcatctcact ggagtctggt tcttctttac attcagttta ctctttgctg
      481 tacctcagat gccttcttat agcaggttat tcatttgaaa aaaaagaccg tgggttgctt
      541 tgctaaggga tccacatttg agatgccttt ttccagtgga catgctggaa atccattttg
      601 gggtgtcttt tcttttttag aggggaaggt aatatgtttt gacaactctc ttaaaattga
      661 ctttcacaaa ttaatatgaa gagagctagc taattgtcac tataaa
//
LOCUS       KCOD01002030             743 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 226219pyr ultra-conserved element
            locus uce-6956, sequence.
ACCESSION   KCOD01002030
VERSION     KCOD01002030.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 743)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 743)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..743
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="226219pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>743
                     /note="ultra-conserved element locus uce-6956"
BASE COUNT          236 a          126 c          127 g          254 t
ORIGIN      
        1 gagttgatgt ttaacttttt ggcctttaag aaattatagt ttgacatgaa ttttaacttt
       61 cgtggctaat aaaattatca tgatggaaca acccaagtaa ataatagata caataactct
      121 tctttgccta ttgtgtgctt ttactattca taatttttag gaccatagat attagataca
      181 cttacgtaag acttaacgaa cagtaattat cttttggcta aagcaaaagc ccaaacgaat
      241 gctaagctgc attatcgctt ggcttctgac atgagctgat aatcagattt tcttgcttaa
      301 atccatggtg cttgaacaat gctacccact gtctgtcctt cccgatatta cccttaatta
      361 gaaagaacag aaacacaaat ctgaattatt tcaaaatctg gtttccatgg tcagtggttg
      421 gaagggctta actttattac aaataaacct ggctttattt actaatgaaa tctgaaatgc
      481 tgggcctgta atagtagata gtctaatagc gtggagttta catgctgaaa aatcttgtgt
      541 gggcaaagta ttttgtaata aatcattaag taattgaatt atgattcttt tatccaatta
      601 ataaagcaga aaaggagacc cataggaagc cccataccat agtttaggcc aagtaatgac
      661 acattgttct ctagccttgt tctttgtatg taggactttc ttctaagatg catttggcga
      721 atgcctgttt ctatctttcc aaa
//
LOCUS       KCOD01002031             604 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 226329pyr ultra-conserved element
            locus uce-4384, sequence.
ACCESSION   KCOD01002031
VERSION     KCOD01002031.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 604)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 604)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..604
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="226329pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>604
                     /note="ultra-conserved element locus uce-4384"
BASE COUNT          206 a           80 c          107 g          211 t
ORIGIN      
        1 tcaaatatgc tttcatttta gggcagaagt gctaaatatt tggagcaata ccgttgtaat
       61 gtgtacaaat gatgaagtcg gttttctgat tttccttgct agttatttag ttctgaatct
      121 gccattattt gtctaagcac agctgaccaa gcaaaactgt gttttaaagt ggctttatgt
      181 tttgataaat gtgatctggt tgaaaagtat tttccactga atgcagagct taatagaaca
      241 tgctgacata atagttttaa tgcattttgt tgaaaatgtg tgaacaacca gaatagcttt
      301 tgttccttca taattggctg taaaagtaga tggaaacata accattacat atggaaatgt
      361 gtgaagagaa agaaataaca tttctgttga atatattagg aattgcattt cctagtttaa
      421 aataagcatc tgaaatggat gcatcttttg aaattggttg tcaaaataaa aagccttaag
      481 tggaatgttt gtcatattat ttttatcctg agttaaacaa cacaattgct aaaggaaatc
      541 gtgcaacctt aataaattta attttaatac tttttgccca ctaagcagaa aaataaaagc
      601 actt
//
LOCUS       KCOD01002032             316 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 226436pyr ultra-conserved element
            locus uce-6957, sequence.
ACCESSION   KCOD01002032
VERSION     KCOD01002032.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 316)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 316)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..316
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="226436pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>316
                     /note="ultra-conserved element locus uce-6957"
BASE COUNT           86 a           55 c           78 g           97 t
ORIGIN      
        1 cccaccactg gcctagtgag atgaatatct ccactcacag ggggatgtta atggtatttt
       61 tattaactgg tgacctgttg actgctatta gaatatagat tgtatgcata aaccaggtca
      121 gggtactgaa gatatgatta tagagcaatt actgtgtcag ccagtgtggc ttctaatcag
      181 agctggcaaa gagtccttgg aagccagttt ttggagtcca acaggaagaa acagctttgg
      241 atcaaagtct gtattgtgcc tttgcatctt cctggaatta aatgtctgat tttctatgat
      301 tggggtgggc agtcaa
//
LOCUS       KCOD01002033             330 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 226533pyr ultra-conserved element
            locus uce-6476, sequence.
ACCESSION   KCOD01002033
VERSION     KCOD01002033.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 330)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 330)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..330
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="226533pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>330
                     /note="ultra-conserved element locus uce-6476"
BASE COUNT           86 a           84 c           58 g          102 t
ORIGIN      
        1 gcttctatac aatctctgcc gggcagacca ccaactcggg gagcgcagca gccgagccct
       61 ctgcgagtgc cttcctggct gccgaaaaga gagcttgtca aaaaaaaaaa acaaatccat
      121 aatggcctga ggctcctctc caatctattt tctgctcagc tggttttaaa tgaagttatt
      181 atgagtcatt aaaacacccg caagcctgtg gaagtcagcc aattacaatt ttaaatttag
      241 cctgttctct accccattct cttgttttct tcttttgccc ataccaagcc cctttggggt
      301 ttttattatt gctaattatt actattatta
//
LOCUS       KCOD01002034             548 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 226637pyr ultra-conserved element
            locus uce-6397, sequence.
ACCESSION   KCOD01002034
VERSION     KCOD01002034.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 548)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 548)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..548
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="226637pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>548
                     /note="ultra-conserved element locus uce-6397"
BASE COUNT          188 a           93 c          106 g          161 t
ORIGIN      
        1 gtagaatggg caaatcaagt gcatttataa catattttca gactcatcct ctggattctc
       61 agggcaagct ggaagagaat tatcttttaa tactgagttg ctttaaatgt gaacgaggca
      121 attgccacaa aagtctctta tttgctgctt ttctcgtcta cacgtgtgca cagagagaca
      181 cacataaaaa atcagcctgt tgtcttgcaa gtgttactta tcatattaat taaaatctgg
      241 tgacacgata acaccagcag ctgtgtggga aagcgaggga aattaacaaa cgtttgattt
      301 gttgtgttgc taatgtgaca cttattatac aggtcacagt aaaacaatac ctcagccaaa
      361 atatgctaat actggtggag aactgttgca gttgtaaaaa cattgatgtt tattataatg
      421 agacaaaata gcacattacc tttagcagag tgaattgctg cttctcaggg caaagtatct
      481 ctgaaggttt aataattcaa aaccacaaag acagaataaa gtgaaattgt tatacacata
      541 aagccagt
//
LOCUS       KCOD01002035             558 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 226744pyr ultra-conserved element
            locus uce-2575, sequence.
ACCESSION   KCOD01002035
VERSION     KCOD01002035.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 558)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 558)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="226744pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>558
                     /note="ultra-conserved element locus uce-2575"
BASE COUNT          147 a          134 c          106 g          171 t
ORIGIN      
        1 cccccactgc cttccgagct ccaagcccct atcccacatc ccagccttgc acttcagcgt
       61 ctccggaaca caaacctccc cgtgtgggtt gtttggagtc gcagatctgt ttgcaaatga
      121 gcttgggggc tcactgggta aaaaaagggc atgcttggtg aatcccattt cacttcccca
      181 atgagctgaa aaactcttgg ataatgggtt atgagttgta gatctgtttg attgcattgt
      241 tgcaaagtgg gaattgtttt gcaacataga ttcttaatca ctgaggcatc tgtgattgaa
      301 tgtgtcgaaa attggttgaa attgaaagtt aactatactg cagacagctt attcttgtgt
      361 ataattgaaa ataaattcta atactcttct tgaaaagggc tgccaggagg aaatttccaa
      421 ccttgtcctc tcccctccaa atccacaaat cttcccctct gatccttttc ctctccatct
      481 taaaaccaat ttctgcacat cactccctgc attgtcagct gtaaaatata gaacttgcaa
      541 atagttcctt ttggaatg
//
LOCUS       KCOD01002036             726 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 226854pyr ultra-conserved element
            locus uce-4110, sequence.
ACCESSION   KCOD01002036
VERSION     KCOD01002036.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 726)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 726)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..726
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="226854pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>726
                     /note="ultra-conserved element locus uce-4110"
BASE COUNT          253 a          146 c          123 g          204 t
ORIGIN      
        1 acgttagaaa caactgctat tcagagatga aagcaagcaa gctttcaaag gtacatttac
       61 actcacagac acatcacccc tcatcctgtt cctcagtggt ttcatcaacc atacctgaat
      121 gtacattatg tcaataaaat tctacatata tcattgattt tgcctattac atgcatgcaa
      181 tgaaaaagga acttaagggg tgactgagaa aagtaattct ctttccaacc tgaggaaact
      241 ttagacaaat ttgcctttga taatcgactg aacaagctgc actgcaagca tcaagggatg
      301 gtgcagggat atctagcagg tgctgcagtt tatcacaaaa ccgtctaaaa taattggaag
      361 tgacaaccag cactaccaca aatgatttat tagtctttca ctcagctttt cagcttcctc
      421 agggccagaa taaataattt accaactctg tatcttccaa tcattaattc ttccctgtgc
      481 atccaaacta catttaactc tgctgggttc agtggaatta aaaacacaat atgaagactt
      541 tttccccaag tatagtatta tctgacttta tcaaaaagta aaattgtcaa tcaaaatttg
      601 tattggtgat agaagggatt agagcaagca gctaaagtta agttacaaaa tatctgcaga
      661 ataaaatgaa agctaaactg aagagatatc aacaatgaaa tgctcccagg ggtcaggcgt
      721 gctctc
//
LOCUS       KCOD01002037             637 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 226966pyr ultra-conserved element
            locus uce-8030, sequence.
ACCESSION   KCOD01002037
VERSION     KCOD01002037.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 637)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 637)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..637
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="226966pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>637
                     /note="ultra-conserved element locus uce-8030"
BASE COUNT          180 a          134 c          115 g          208 t
ORIGIN      
        1 tcctaaatgc taactgcccg acaacaaggc ctggaatgca cctttccctc tccaccccac
       61 cctgcacatg acacaaactc caagttcccg aattgatggt gtttatgttt gaaacatttt
      121 tctgatgtct ggctctgtca agactaattt tagcatttct aaagctgggt aaaaatacag
      181 cctcattact ttgatgtcag agcatagttt actattagta tattctgggg tttatcattt
      241 tagtcatgtt taacacagct acagcaggca tgcactatta aatctggctt attttacatt
      301 cctgtccgaa attatttatt tggaacaatt tcctctctat caaaagacac ggctaatgct
      361 gagttttaat gtgttattta cacacaaaat aacctattta caactcagta tctgccgcag
      421 ggagaatgaa tggggcagtg ctcccttcat cctgttgtat ctgagtttaa caatctggat
      481 tgctaataga accatttatc acagggtggt aatttatttt atgttagctg cacaggtctc
      541 cctgcctctg atctatggaa atactttgta tataatgaag ttcaacaagt catttggtgt
      601 aaacatgggg aagccaagct gcagaaagac tctggct
//
LOCUS       KCOD01002038             548 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 227078pyr ultra-conserved element
            locus uce-2276, sequence.
ACCESSION   KCOD01002038
VERSION     KCOD01002038.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 548)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 548)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..548
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="227078pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>548
                     /note="ultra-conserved element locus uce-2276"
BASE COUNT          148 a          133 c          142 g          125 t
ORIGIN      
        1 gccctgggaa agaatgacag caatgccatc tggagctgtg agcagggccg ggagcagagc
       61 acagctctcc agctgaagag aggtgcccgg ctgctcttgg gctcagggga gggacaggag
      121 ccactcagca aatggctgtt caggacatta ctgtgctcct taagttaatg agaaacaagc
      181 actgccagaa gaaaacatct cttatctgct ttagtgccac agtgcatcgg cttcagcata
      241 aaatttacag agcttgaaaa tggggcataa acattatggg taaatttggc agaaaatgtg
      301 actgactctt atctggtcat gaataaataa ttttcaatta ccagcccagg cattgctatt
      361 atcccacaca gggaattcct ctgaagtttg ttttgtgctc aagtacacaa gcatgtgggt
      421 ggcaggaggg gaggtgtaga ctcaggcagg ctgtgctgtt cccctgaaac atcccccagc
      481 agctgcccca gcatttgcag gatgctgctc tcccctcggt cacatcatcc cccaaaggca
      541 aactcagg
//
LOCUS       KCOD01002039             525 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 227187pyr ultra-conserved element
            locus uce-8006, sequence.
ACCESSION   KCOD01002039
VERSION     KCOD01002039.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 525)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 525)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..525
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="227187pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>525
                     /note="ultra-conserved element locus uce-8006"
BASE COUNT          177 a           95 c           88 g          165 t
ORIGIN      
        1 gaacagtatt tatttcctaa tataaacaaa aatactattt ggattggagg agcatgaggg
       61 aggagtaaga gaggattaat gtgctgactg ttccccactg gggccaccaa taacaatcaa
      121 tcccaaacag cagtcacctc acatcatcta acagcttgaa tcgtcgatat acaaagattc
      181 tctctttttt gttcagatta aatatcattt aaattgcatc catttcgtca gagacataag
      241 gtcagaattg attgaatatg tactacctgc atataatgat ttccagtttt ttacaatcat
      301 gtgctaatgc tgcacagtaa tggcctatgg atgaagagac agatgtacta ccagtcattc
      361 gctacacatt tgcattaaca aatcatcatt taattgaagc ccatccaaca agtttatgct
      421 acttaaataa agttcctttc cataaaagat gttgcaatga cacatggttg ttaacagcaa
      481 ggtaaataaa aagtagtatt tattttcttg tcactggttt agtta
//
LOCUS       KCOD01002040             874 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 227294pyr ultra-conserved element
            locus uce-15, sequence.
ACCESSION   KCOD01002040
VERSION     KCOD01002040.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 874)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 874)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..874
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="227294pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>874
                     /note="ultra-conserved element locus uce-15"
BASE COUNT          282 a          168 c          153 g          271 t
ORIGIN      
        1 tacactatat tttattatac tggatttaag ggaagataac acaattatgg ttaatttgct
       61 tctcttcttt atatatatag tgtcatgacc caccacagct ttgtcccatg agatattttt
      121 aaccaaaaag aaatccacaa gaaactctcc ctaaaaattc cattaataac ctcttgtagc
      181 atgtataggt tgcagggtct ggaactaaga atgttttaat ctcttcagca aaacaatgtc
      241 tcataatgat gtacaggact attgctgcac tgatgaagaa tcatacataa ttcagcacct
      301 ttcacttggc accactgtga tatcctcatt agcagtggct cacagtggct gtcagatggt
      361 gtccatgcga atgcaggcat tatattgtct ttgagatgtg cagctgcttc catgacactg
      421 ccagtatata aaaacatgac gccagtttgt tttatttagt gctaaacctt ccagtttgta
      481 aaaacaaggc tgacacagag cctgacatga ggcagtgaaa ataattagct ctcattttct
      541 cagcctccta tttccttctc cccgctgtgt tctctttcca ctaaaccacc acatgtcagt
      601 cgaaatggga ggcaattagt gggctcattt cagtccccac aactgtgctg aaaagaaagt
      661 atttatgatg gcacaatgaa cagctgaaag attaaataac atttgccttt tgaaaagaaa
      721 atgacttcta gctaaatggg caatttttga ttattctcaa acaagcttag agtagttggt
      781 ttttaaaata caagaaagga aaatgagtca tttttaggtg aaagaatcaa ataaaacttg
      841 acacagtaat gcaaataact gatgttttat tgca
//
LOCUS       KCOD01002041             668 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 227404pyr ultra-conserved element
            locus uce-6183, sequence.
ACCESSION   KCOD01002041
VERSION     KCOD01002041.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 668)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 668)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="227404pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>668
                     /note="ultra-conserved element locus uce-6183"
BASE COUNT          176 a          120 c          110 g          262 t
ORIGIN      
        1 tttgaaaatt gtgatcagag tttactagtg aagtgttcct tgttttccct tccaaaacca
       61 cataatccac ttttctgcac ataagttttc tctcagatgg ttgaattatt tattaattat
      121 tatgtgtggt taacaggttt tctcaaggat tgctttcttt taaactaata ttcatgcatg
      181 tttgtgtgcg tgctagttcc tgtcatgttt tctgactcta caatgtttat tacactttag
      241 acaaataccc cagggagatt atgtaaaaaa ggcgggagag gccgactctt tttatagcga
      301 catgcctcct ggagtcagca caaactctgc atctagttct aagaagaggt ctgcttttct
      361 gtcgcatttt cagatttcta cctattccat cacccattat tccattagtc agaacatttc
      421 attgttttgc agcaggtttg actctttctt ctttctttgt tttgaaatag catccttttt
      481 gctttgatta ctgatttttc tcctatatcc tgagctgata attattatga ttaggccaga
      541 gtaaagtttt gcattttaat caaatatccc taattgattt caagcagact gtaataataa
      601 ttgctggctg ttttaattat ggtcatgtaa tcaaagaaaa ggaacattgt cttgcttcaa
      661 taatagtt
//
LOCUS       KCOD01002042             443 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 227515pyr ultra-conserved element
            locus uce-4075, sequence.
ACCESSION   KCOD01002042
VERSION     KCOD01002042.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 443)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 443)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..443
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="227515pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>443
                     /note="ultra-conserved element locus uce-4075"
BASE COUNT          159 a           74 c          111 g           99 t
ORIGIN      
        1 aaaaagctcc agctccttgt accgtagcag gacttgcaca ttgcaaaaga ggaggagagc
       61 gcagtccagg gagaggttag tgaaaaatta gtagtgtagc catcgagaag aagctgaact
      121 gtcataaagt cttacacatg gagcgacggt agaaggcctt cattttgtct ttttccttcg
      181 gtctgttcct caaaaagggc agtcttttca gtgcacccac ttttatgtca tagcatgagg
      241 aaaaacggaa acagggaaat gaaagaaaaa aagggagaag aacagatgga agttaaatgt
      301 tgaaactaag gacagaaatg aatgtcgagt ttaagctagg taaaagctat catgggtgat
      361 aattgaaagc tacactaaac aggaaaattg cactaggaag acttccacag gtaactcaaa
      421 tgcactgaag attacagtgc agg
//
LOCUS       KCOD01002043             709 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 227625pyr ultra-conserved element
            locus uce-5221, sequence.
ACCESSION   KCOD01002043
VERSION     KCOD01002043.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 709)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 709)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="227625pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>709
                     /note="ultra-conserved element locus uce-5221"
BASE COUNT          212 a          142 c          107 g          248 t
ORIGIN      
        1 tttttaaatt tcatgacaga tcagaagtgt aacaattttt aatacaaatg caaggcttcc
       61 aagaatcgtg ttcttaaaat ggtaggattg aaataaagac agaaagtctt ctatatatcg
      121 cctgtaacct tattttaact gccgacaaca acccagaaag aagtctgggt tttactgaaa
      181 atgagataaa gaaaaagaat ctttatgctg agtttgcaga agttaaaacc tgtgatcttg
      241 aaccatattt aactaatgaa atattatcct aaatgaataa aagaacctta tttcttatgc
      301 gctccttttt ggatgccatg tcatcacact tgtcctcttt acccagtttg tctactgcct
      361 ccacagtgaa gctgtagttg tagttccctt tctttcctct gtcttggttg tatcctttcc
      421 cccatttcag ctcttcttca ttccttctca taaacttgtc aaactcatag tgagttctat
      481 gctttctgcc atcatccaat cgataccttt gtctttcagg ttctttttct cgaaatcttc
      541 tctccaaatc tctttgctct ttgtcactat cattttgtga cctatgagta tgtataaaaa
      601 gaaagaaaat ccaagcaatt aacagtaaaa aggagcagaa ggatacaagt caaagccttc
      661 ctttgacttg tgtagataag ttatatggca aggttttctt ctcattaca
//
LOCUS       KCOD01002044             428 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 227733pyr ultra-conserved element
            locus uce-2834, sequence.
ACCESSION   KCOD01002044
VERSION     KCOD01002044.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 428)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 428)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..428
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="227733pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>428
                     /note="ultra-conserved element locus uce-2834"
BASE COUNT          165 a           68 c           92 g          103 t
ORIGIN      
        1 actgaatttt ggtggatttc agagcatcta atcatgtcta tcatgccatt aaaggaaaag
       61 tcagaattaa aggatgcaca tgcatcacac ttccatatgc aattcattgc tgtgaaatac
      121 agagagacaa gcatgcagat tcatatttat ttgagaactt tagttgtgaa gcaagacaca
      181 cacaattaaa gggtaacaaa ctcaattcac agcagagtgc agaaaaaaga aagtacagta
      241 ctaactctct gagaggattc aattttcatc atgtaccttt gaatgtcaag ttctgaatga
      301 agggagacca acatgcactg caaaacctgt ggatcaaaga gaggaaagaa ggggaggggg
      361 agagataatt gttaacagga ggagaacaat agaaattaga ataacctgta catactgaaa
      421 gcatactg
//
LOCUS       KCOD01002045             381 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 227837pyr ultra-conserved element
            locus uce-785, sequence.
ACCESSION   KCOD01002045
VERSION     KCOD01002045.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 381)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 381)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..381
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="227837pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>381
                     /note="ultra-conserved element locus uce-785"
BASE COUNT          140 a           65 c           42 g          134 t
ORIGIN      
        1 agctctgaag tatagcaaaa cataaattat tacaaaatta acactataaa aatttatttt
       61 aagaatattt ctaaactcaa agggtctagc cttgtttata attgcttaaa catttttagt
      121 cttaaaattt gccttaagcc ttcttttttt aaaaaagaaa gtagtaataa tctccctatt
      181 tgcagtctct cgcccaagat gtaaataaac cagcatataa gtgcactttt aacactgtag
      241 aaataaaaat taactcctct gtactattgt ttcagtacct agtattggct tcctgattaa
      301 tattttatta aaaaattatt cagtaatcct ataagaaaca ctgtcagtgc aattctatta
      361 atgcaagcca atctgctcaa c
//
LOCUS       KCOD01002046             767 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 227947pyr ultra-conserved element
            locus uce-2349, sequence.
ACCESSION   KCOD01002046
VERSION     KCOD01002046.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 767)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 767)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..767
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="227947pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>767
                     /note="ultra-conserved element locus uce-2349"
BASE COUNT          226 a          126 c          139 g          276 t
ORIGIN      
        1 gtagccacac tgtatttatt atgaatttga gaaggaagaa gaaattgctt cagcactgcc
       61 tccttttcat acttcatatc tctaaaagta gccagttaat tacattccat ggttactgct
      121 attgtaatat gtgtttattt gaagtgcaga gataatcatc gattgtatac tctcgactgc
      181 actattaatg gtttgaatac ccacattgtg tttacatttt actttatagc taacactcag
      241 ccattgtggt tttaacatgt agtaattcag tgaatactgt aatgcccttg ccatttcatt
      301 ctgcggtatt aagtgttgtt tttctaggaa ggtcttgaaa tgtggggcat tatgtatgag
      361 ttatgctaat ttgttagggc aatgaataca ttaatttcat tagtaaatgg cctcaaagca
      421 ataattacca gtgtaggtgt gtcagaaacg atcatgttca gttttgccag ttaattatta
      481 agattttgtt ctaagggacc cagatttgac atccagcttc aatttagcca taaataaaag
      541 tctgaagtat atcggatcta gccaagaact tgttttgctc ttagaaattc ctacattttg
      601 tctaattgtg actgccaata agatgctgaa atagttagtg tcagtgatat gaggtttata
      661 ctatacctcc caaaaaggca cgtcataatg aaaatagcaa ttgtgctttc tcattcttct
      721 catctcgcgt tatgttacag aatgctgaat tattcaatgg cagtatt
//
LOCUS       KCOD01002047             581 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 228055pyr ultra-conserved element
            locus uce-5091, sequence.
ACCESSION   KCOD01002047
VERSION     KCOD01002047.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 581)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 581)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..581
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="228055pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>581
                     /note="ultra-conserved element locus uce-5091"
BASE COUNT          164 a          126 c          112 g          179 t
ORIGIN      
        1 tgacaaccct ttttatgcat ttaattcatt ctcaatttct cataatcagg agaaaggtgt
       61 cccctaaggt taggagtgag cttgtcaaaa aggcagcgta aatttgcaga ggtaatcacc
      121 agtctatctc ctttccccac tgtccatgga actattaagt aatatcactg tctaatcttt
      181 tttgtactta tttattttgc agtgagaaac tagtgttata aacaccccta ctgtcaaaac
      241 ttgtcatcct cattacctca aggcgggttc catctcagtt attctaattt catagtttct
      301 cgaatttaca gccgctggaa attgagtaca aaatccatta tcatttgtat attttaatta
      361 tgcaaatgag gcagctcagc tgctctggcc gggacctgca gggatgccta acttcagtct
      421 gggtgattac aatttatcca gtcgagtcac tttaattgta acaagctaat tacattgttc
      481 catttggttt taacaaaaga aaaggagaat aatggcaaag gccccgcgtt acagccgcgt
      541 ctgagcgagg tagcagggtc cccacacacc tgcggagggc a
//
LOCUS       KCOD01002048             759 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 228163pyr ultra-conserved element
            locus uce-921, sequence.
ACCESSION   KCOD01002048
VERSION     KCOD01002048.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 759)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 759)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..759
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="228163pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>759
                     /note="ultra-conserved element locus uce-921"
BASE COUNT          218 a          158 c          138 g          245 t
ORIGIN      
        1 agctctgtgc cattctccac tcccactttc tgctttgcct tggggtaaaa accatgcctg
       61 ggattggatc ttctagtctg cacattccat ctgagcgact caaaccactt gtttgaacat
      121 cctgtaggag ggatccccac atttctctgt tcctgtatcc tcatcctggt tggttttaaa
      181 tacaacaatt aactgaggat ggcaggaaga caccaagcag gtaaacacag tccctttgag
      241 gagcaggaaa aagccacagt ttgaagaaag taacaagagc tgcatttgtg tattttgctc
      301 catggagctg aaaatatcta gtaaattgat cccgtgggag taataaatac acattacttt
      361 atcttgtact tcatgtccta tacccctgag ccttgataga acaacaccac ttaatagact
      421 taaaaaaaga gtaattacag tcattggttg tgtgatattt cagcccttcc agccctgcct
      481 gaccttctaa tttagctcac cgtgtctaac taatgcattt atattcatct tttatgaagc
      541 atgtgtagta caaaattgac tttgcagcct ttagcaagct gtcttaccag gtttaggatc
      601 tggttagtac agcgtactgt atagcatatg tacatttaca gcagaatttt gcatgcatat
      661 ggttctgata atctattatt tttatccttt tggaaataaa ttttttaaag cttttattca
      721 ttgcagcatt atttacagct aaacatgcag gcagaaaga
//
LOCUS       KCOD01002049             663 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 228274pyr ultra-conserved element
            locus uce-6444, sequence.
ACCESSION   KCOD01002049
VERSION     KCOD01002049.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 663)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 663)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="228274pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>663
                     /note="ultra-conserved element locus uce-6444"
BASE COUNT          224 a          131 c          123 g          185 t
ORIGIN      
        1 ctgtagaatt cctgagatta tcaccttcta accaaacatg tcctttaggc acctatgatt
       61 gagcaagatt gaaatgtaaa gaaaccagaa cagaagcaca gtttgcctta tcctgatttc
      121 tgtgctctgt atttcatgac tgtgtaatga actaaagaga cccactgcca gatttagagg
      181 gatgaggagt gctccaaagt atctcttcta ccatgtgctc aaaaaccaat ggtttgcaac
      241 aaaaaatcca aaatgaagat gtaagaggtt agagcaatgt gacagggtca ttaatttaat
      301 agacttcaaa agaggtcatt aggatgttga ctgaaaatct gccctcctgt cgcagtaaca
      361 gcatgaacag ggcagccaca cactcatcaa catcctgggg ccagcaccaa ggctagacct
      421 gttagtagat tcatgatgaa ctaactggta attgattgtg acatcaatta cgaataatct
      481 catcatttta tcggagtagg cttgtcaaag ttctaattaa gatcacagtt cattctatgt
      541 gcaggcagaa tccacaacac attatattgc aataatgatg atcacaaaac agcaaatccc
      601 tttttataat ttgaaaatta atgatggtga ccttatacta tatgacaaag acctttcatt
      661 gcc
//
LOCUS       KCOD01002050             770 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 228384pyr ultra-conserved element
            locus uce-98, sequence.
ACCESSION   KCOD01002050
VERSION     KCOD01002050.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 770)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 770)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..770
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="228384pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>770
                     /note="ultra-conserved element locus uce-98"
BASE COUNT          236 a          155 c          145 g          234 t
ORIGIN      
        1 tgtatgggag ggaaaaaatt aagtgcacat gatgaacttg aaatataact acagcatttt
       61 aaaagctgaa aataaaagct tttaagagat acattttggg gcctgaaatg agaattgata
      121 cagaaagcta acctggcatg attttagggg atatatctaa aaagcctaat cattgataat
      181 tcacaatttg tgagcctggt gggatttcat gcagagcact agcctcacta aggtaattgg
      241 tgctattgaa acaacactgg ctcagcagca tgctgctttc ttcctcgcct ctgggcacag
      301 gaaggatcaa tatttgttag gattgcttct tgttccaaca atgtaagatt tacaatactt
      361 gctaggattc tcactttgtc ttcacacaac tcatcagtgg aacccaatta ctaacctcag
      421 acaaacaaca ttaacatgag cctctatgct tctttattgc ccttcatcca agtctcattt
      481 cagggtcttc aggcagtgcc actataacag atactacact ttaaagtgtg ctccaaggaa
      541 taaattttca gtctttcatt actcgtacct tgatttactt catatcatct tgccgctata
      601 gacaaagata acacactgta aattacagcc atcctgtctt gtagtttcag aggtaggggg
      661 aaggcaggga gtgatgcttt tgcactacaa ttagcactgg gcaccacagc ttcattgcta
      721 tcatcactgg tgtctgaaac ttgttttatc aaagatgcaa agtcattatt
//
LOCUS       KCOD01002051             632 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 228492pyr ultra-conserved element
            locus uce-3919, sequence.
ACCESSION   KCOD01002051
VERSION     KCOD01002051.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 632)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 632)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="228492pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>632
                     /note="ultra-conserved element locus uce-3919"
BASE COUNT          205 a          115 c          121 g          191 t
ORIGIN      
        1 tgaatttctg gtgtgatttt atctttggtc caaagctctg ctagacccag ttgattctga
       61 aataagtgct ttcaggaagc gtattggaat aactttaaga acatttcttc tgtttctact
      121 aataaaggaa aggattcaag ccacatctgt aatgctgaat tttgggacaa ggtgtgcttg
      181 ttctaccaag gatatgccaa taattcaagg caatcagcag gttacattac agtggaaagt
      241 ctgaaccaac aagctgtaca aacaaaatag caatcagaag atttaatgca tttctgatgt
      301 acatttaagg cattgacact gggccacaga tgtacatgtg ttgtgtttta tcttgttgag
      361 atatggcttg tgagaaccta ttatagcaca tcatcacacg caagtactgg gcacagcaaa
      421 ggaaaaattc catcacacat tactcctgca ggtatattag agaaacaaat tgtacttgga
      481 attgaaaagt cacaggctta ttctgtctta ataaattcct gccaaaaggc taagtgtaaa
      541 actagaaata cttcccaaat gttgttactg tattatcatc tctgacatct caagggctgc
      601 tcagggatat catttcagag ttcccacaat aa
//
LOCUS       KCOD01002052             744 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 228603pyr ultra-conserved element
            locus uce-7223, sequence.
ACCESSION   KCOD01002052
VERSION     KCOD01002052.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 744)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 744)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..744
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="228603pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>744
                     /note="ultra-conserved element locus uce-7223"
BASE COUNT          250 a          132 c          113 g          249 t
ORIGIN      
        1 gagtatgtct ctgataaatt ttatttaaat ataaaaggta ataggctgaa aatgtagttt
       61 gcttacaagt ttcctttatg gttgactgtc acttttctgc agatttatga taatcattct
      121 tgcaacaaaa acgtttactt cactgtctaa ataataaggt aatttgttac agctaattac
      181 tcaagtgctt ccttaatctc aattaaaaga ttcaggctga ttttctacat ttctgcagca
      241 gtatgttcca gaatatcttg ttaatgtatt cccaatcaca tatttgttaa ggaatgcatg
      301 gtccatgcaa aactgaaatg ctaaaataca tagctgcaat cttaaacaat gatttattgt
      361 gacacgggat gtgggacatt tccacagctt ttgtgattgc agtaatgaag ctgtaaacca
      421 aatagcatga aatgaagcaa ggccttacaa tttaatcagc tcgtaaacag atctactgca
      481 tcaagcaaat gacattatta tccatccgaa gtaaatcatg ctaatctcag gagataaaat
      541 caacatcatt aatggtcaca tgtcatattc atcaacacta aaccatccct tttgacagat
      601 taatcctaac tacagctccc acgatgtatg gtaatagggc ttgtagcata catttcattc
      661 agcagtaagg ctaaccagca ctcttagtct gctattacaa ataatttttt tattgattta
      721 catattttaa aatgcattta aggt
//
LOCUS       KCOD01002053             622 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 228714pyr ultra-conserved element
            locus uce-3407, sequence.
ACCESSION   KCOD01002053
VERSION     KCOD01002053.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 622)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 622)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="228714pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>622
                     /note="ultra-conserved element locus uce-3407"
BASE COUNT          190 a          124 c          103 g          205 t
ORIGIN      
        1 catcaattag gagagcacac caactcttag aaaacacagg agatttattt tgttgcctga
       61 aacatggttt ctaacctgga aatacttcat ctctgcagag ctgtgttctc ccacagtgat
      121 ggagaaagct ttgcagctgt tcaggttaat gtgctcctgt ttctctgctg aatttaaact
      181 caaggataca ccgcattctt caaagcttga ttggcacagg gaagattcag tgttaatctc
      241 ctagtctatt actactgtct ttcataatct acatatattt tacaaattct ttagtaagaa
      301 atgctgtcag agcaaatgat gcatcaaatt caaacaggcc atcaagattg ctaatggatt
      361 ttaatagcag ctattacagc ataatggtat tttcccaaca gctgtttgtt tataaaattt
      421 tcagtttaca agacctttat gtccaatccc aggagacatc cctcaattca tttataatca
      481 tttggttcaa cctacatgta aatgctgtct tatgtatctg tagaagactt gagcaactac
      541 cacagaaatg ggggaacttt acaaactaaa ctaattagtg tgtatctttt gactttcgca
      601 agtgttttac cccactctta aa
//
LOCUS       KCOD01002054             554 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 228828pyr ultra-conserved element
            locus uce-2576, sequence.
ACCESSION   KCOD01002054
VERSION     KCOD01002054.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 554)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 554)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..554
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="228828pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>554
                     /note="ultra-conserved element locus uce-2576"
BASE COUNT          176 a          100 c          138 g          140 t
ORIGIN      
        1 gctttcaagg ctttatgaaa tgtatggtac cagagagaag cagacgactt tgtttttaaa
       61 caaagacccc gggataaggg gcaatgtttt tcccctcaca ggtgatggag tacgtacaaa
      121 gaatgcagcg gataatggca gtcctgtcct ctgaacagat ggtgatggtc ctgttgctag
      181 gataaggcct gaagaattta gtttttaatt ccacattatt tgcctcagtg ccatgaatat
      241 ccctaggttt cctcaggcaa aaatacaaca aatacacaga aagagaaaga gaagtgacat
      301 gcggatagaa aaggagacag agcacgggaa aggactggag ccaggtcaat agaagctttt
      361 gggaaaatgt ctgctcagct gtctgcaatc acctgggttt gaaaggcagg caggaaggaa
      421 gattggtttg gcatgagaac gaggcctttg atgctttaga taccacagag aaaaatacgc
      481 atttcttccc attagaagtc tgttgacttt cctaattaag ataaacatgt ttctgaagaa
      541 gttagctctc acag
//
LOCUS       KCOD01002055             410 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 228937pyr ultra-conserved element
            locus uce-2100, sequence.
ACCESSION   KCOD01002055
VERSION     KCOD01002055.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 410)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 410)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..410
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="228937pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>410
                     /note="ultra-conserved element locus uce-2100"
BASE COUNT          141 a           67 c           58 g          144 t
ORIGIN      
        1 gggggaaatg ttagtcctta ttctttcact taaatcagtg ccaaaatcaa ttttgaaata
       61 tcgtctcaaa gttgctttca actcaatctg ggtgtttctt tactgctaga atatcacccc
      121 atacactgga atcgttatta catcacacta atctaattta aatgcatttt tactgtactt
      181 ggtttaatga atgtggaatg tgtcactatg aaattgcacc attaatttga taaataggac
      241 ttgaaggtat aattttttcc agcattgcag actaatgaag ctaaaataca tatataataa
      301 gaagtgtaaa taataaatta ttcttaggag caaaaaaatt aattagatct tcccacaaat
      361 tgcatctcat ttttttacac tactgacttt caaactagtt ggaacatgac
//
LOCUS       KCOD01002056             564 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 229048pyr ultra-conserved element
            locus uce-6185, sequence.
ACCESSION   KCOD01002056
VERSION     KCOD01002056.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 564)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 564)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..564
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="229048pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>564
                     /note="ultra-conserved element locus uce-6185"
BASE COUNT          205 a          111 c          138 g          110 t
ORIGIN      
        1 gtttttattg ctggggttaa aaaacacgaa tttgcattac atcctggctc ccgctgtaat
       61 acttcagtct tgtttctctc tcgtcccctc tccagaacaa ctgatgctat cacagcctga
      121 tttaatttca aagacggatt gtgatttggc agtcaaaaaa aaaagccaag ttaatcaaaa
      181 gtcaccatct gctgcgttgc catggggata ttcctcccca ataaatgtgc tctttgccaa
      241 aatcacagat aacagcacta taaagggtgg gaggtggaaa tcaaagaaag aagttccgac
      301 actgaaaaaa cgaaagagca agggataaag agaagaagtg ggagaggaag gagcacagac
      361 tactgagaaa aatgacaaat ggaccaacta gagactaaca agcagctgag ggtgacaaag
      421 tgatggaggg agacagacaa ctggaaagga ggaaagagga gagacgccga gacaccctgc
      481 cgcatagtat accaaaacaa caagcagaga taagagaatt gccctcaaag ccttgtctca
      541 ggggaagggg agaaaactga agca
//
LOCUS       KCOD01002057             790 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 229155pyr ultra-conserved element
            locus uce-937, sequence.
ACCESSION   KCOD01002057
VERSION     KCOD01002057.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 790)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 790)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..790
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="229155pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>790
                     /note="ultra-conserved element locus uce-937"
BASE COUNT          210 a          179 c          174 g          227 t
ORIGIN      
        1 tttggtagca atattccctc ctcgccttta caaccgaatt ccctctgttc ctgccgtgtt
       61 gatagttcgg gacattgttt tgatttgttt gtctctcaaa aatgacctaa agaaatctgt
      121 tgttaatcac atatcaacga gggagggatg attagttaat aaaaaccacg ccttgtgtct
      181 gtggaccaaa tggctaactc tggttctcag tatgctcttg aaagactgtt cccatccctc
      241 agtgatgtag ctgcagctct ccccgaggaa tgagaagttc actattcact ctgtgcttgc
      301 atcacccttt ccaacatgtt cccactgata cattaaagga attaattgct cataatgatc
      361 tcaccatctg ttaacagagg ttcataccta caggctggtg gcatgtggtg gtcctattca
      421 gaaatcaata ggcaatgctg ggggaacgct ttcccacatt gccttccatt gcactctgaa
      481 aaggggagga gagctcagtg ttggccatct gctccttgtc tttctgtgcg agagaccttg
      541 atgcagtcca gcctggctct gatctgactc cagtctgatt ggaatgtggc tgatctgaga
      601 gcctctcaaa gctgtgaaag tgagtcaaaa ggagatccct attgtccagc agggctgaaa
      661 gaaaatgatc actttaaaat tcataactcc caggtgcccg ccatctattc atgggaaaaa
      721 ctctctgaac ttctcttcat taaaaagaga gggagtccag ctaaaaagag agaaaaggaa
      781 gtagtttgtg
//
LOCUS       KCOD01002058             606 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 229263pyr ultra-conserved element
            locus uce-3884, sequence.
ACCESSION   KCOD01002058
VERSION     KCOD01002058.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 606)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 606)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..606
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="229263pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>606
                     /note="ultra-conserved element locus uce-3884"
BASE COUNT          175 a          150 c          109 g          172 t
ORIGIN      
        1 aaagtgctga agcccaatga ggagctgtcc tctcacatca acacttatat ggaatggcag
       61 tggtttgtag agactgctcc ccctggattt cagccacaga gaagtgcaga ggtaaaaagc
      121 cagcctcttc ccatgttatt cccagtgaag gaataacaga aatgaagaca gttgtgctgt
      181 tcagctcttt tcttcatcat aaattcatac aagcagatgt aacacagaaa cacatacatg
      241 ttctgatgtg aaggcaacca gtctgggaat agctgccatt cctttttctt taacttctgg
      301 gaacatcttg aaacgtgcaa tcaacatagc atacatgtta gatatggcac cacctggagt
      361 ccacagtaat atactgttac tttttctatt cattgtaata tcatttcaga caagtcttgc
      421 tacagactgt aatgcaaatc acagattctt cttcctgatg cctgggctgt gtactaccac
      481 acacaaatag cactggggct tcctttcacc ctcactctat tccttcagtc cagtcttagc
      541 tttccatata ccatcaagat gcccccacaa ggcaacccta agggatttcc aagtgccacc
      601 taattt
//
LOCUS       KCOD01002059             692 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 229375pyr ultra-conserved element
            locus uce-7972, sequence.
ACCESSION   KCOD01002059
VERSION     KCOD01002059.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 692)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 692)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..692
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="229375pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>692
                     /note="ultra-conserved element locus uce-7972"
BASE COUNT          166 a          211 c          139 g          176 t
ORIGIN      
        1 aaggcaaccc agctccctcc cagtgcattc ctttccctct acctcccaac ctctgtgcat
       61 gtgtcttgtc atattttctt cagctgctaa ctgtctggac tgagagattt taaacagcca
      121 cagcttagga aaagcgaaac ctgtctaagt gactattgca gcccgtaagc ttcgtgctgc
      181 cgggtaaaat tttccagggg aagtgctctt ctgatagttc tcgagtcact aagtcaccct
      241 ccctcctcct ttccccacca cacacactcc ccttgaggcc tgaatgcact tgtggcaata
      301 aaacattcat gcgacttgga attttaacac aatgccattt ccctagttta acctgaaagg
      361 aatgcactag tcacaacaga ctacatcatc ctgccattaa gccctgccaa ggaactgctt
      421 ttttggctgt gctgggccag cgttgacggg aaaggagtac acagacccac acacagagca
      481 cagaggggcc acctctgctt cctcagcctt atccagcaac acccagctct taaccatgac
      541 ccctggcctg tgtcagcact gtgacagccc tgtgatgcat gtgtcacttc aggacttctg
      601 caaagtcaca acactgagca ggcaactcct gcctttcact gacttgctgc tctgtctcaa
      661 cacgcacttg atcatctgcc agagggtggt tg
//
LOCUS       KCOD01002060             502 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 229481pyr ultra-conserved element
            locus uce-4314, sequence.
ACCESSION   KCOD01002060
VERSION     KCOD01002060.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 502)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 502)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..502
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="229481pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>502
                     /note="ultra-conserved element locus uce-4314"
BASE COUNT          146 a          105 c           92 g          159 t
ORIGIN      
        1 tttctcttcc ttgtacagtg cggtctgaaa tagtgttttc cctttcctaa caatactgta
       61 gactttccag tgattatctg ccatctgttg atttcagtat ttcaattact tcagaatgct
      121 ctggaaaaca actcatgtac attcaaaggt agcttcagct gagcaagtgt ccagctaatc
      181 cccttagcac acagggacaa ggctgccacc agctctaatt gattctgaaa tgaatctgta
      241 tagaaaatta gaaggtttgg attcccatgt gagcttcaat aaagagccag gatgtaagcc
      301 tgacagctga atggattcat aaatgaaaat ctgataagcg gcttaaaagt gtacttaagt
      361 ccagaaatta tttgaatgct cttgttgtca tctagttaat tatctctgaa gatgagttct
      421 tgcagaggag aagatacact agcctttcac agccttttct catcacatat ttattaaatt
      481 ccaccctcct cgccagtagc tg
//
LOCUS       KCOD01002061             898 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 229594pyr ultra-conserved element
            locus uce-2054, sequence.
ACCESSION   KCOD01002061
VERSION     KCOD01002061.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 898)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 898)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..898
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="229594pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>898
                     /note="ultra-conserved element locus uce-2054"
BASE COUNT          318 a          168 c          141 g          271 t
ORIGIN      
        1 ttctcttgtt tactaacatg atttataaca gcattatatg gtgtcactca gaacacacag
       61 cagccatttc atattgatta agcattttaa aacattttat cacattttaa aatacgttca
      121 gctccatttt ttgatacaca caaatacaac agatactaag cgtgggaggc atcacgagga
      181 gattgtaaaa caaatacttt ggccaaaacc acagggcatt ctacgccttc aatcaaacca
      241 cagcaattaa tatgaaattc taaatacaga atataatgcc acataaatag tataacagcc
      301 aagtcctgtc taagaagcca tatgtttttt cccattgttc aaaaaaagga gatgacttcc
      361 cgtcacttat gtttctgatt agcaaggtga tttatgccac aatcactaaa aatgccagca
      421 agtgaatgag aaaatgcata gtgactgcac cagatgtgca caataaacag gaatcccatt
      481 gtaatctctg gtacttagtt tatatgaagg taatgtaaga aacactcttg gatatggcaa
      541 agtcactctt tttttacatt tgactataaa tgatatgaaa taaattgtgt gttttatact
      601 ttatggcatg catacattga taaattaggt acagttttgt atcccaactt atctacaaga
      661 caaacctggc taagatcatg gggattaatt gcttcagaag tgtgaaatgc agcttttcca
      721 ttcttttctg cacactcagt gaagaaacaa tgattaatca ctgtttaact attctcctga
      781 ggatctacaa gattgccaaa gcaggactta tcctcataaa tccaaaaaac acaggtttag
      841 atttgttgcc aacaactgaa agaacatgaa ctcagagcca ttcgttatca gattaaaa
//
LOCUS       KCOD01002062             509 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 229702pyr ultra-conserved element
            locus uce-7161, sequence.
ACCESSION   KCOD01002062
VERSION     KCOD01002062.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 509)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 509)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..509
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="229702pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>509
                     /note="ultra-conserved element locus uce-7161"
BASE COUNT          194 a           78 c           86 g          151 t
ORIGIN      
        1 atgagctgtc cacagtgcat ggaaaaaaat ataagatata tttagaacaa tattttaatt
       61 tgcaatactt gattagatgg aaagaatgta atgtttagaa aatgtgatta agaagcttaa
      121 gtgcacagta tattacatga aaattctgat cataaagaaa ggtaatatct actcaaaatt
      181 ataatttctg tacttttgaa atcaactcag caagaattat ctacccatat caaattgtag
      241 cacttgtcaa aatcaactgt aaagcatctc aagtgctctt ctgaatcaac aaaacagatg
      301 tatagcgatg tgaggttgca ctgaaatgga aataaaagtg aactagatgc cagtcattgc
      361 ccttaatctc ttgaacccgg cacttaacac agaggatacc acaggtcttt gggacactgt
      421 ttagaagggg aagaaatcaa gacttgaatc ttaatagcat atgcaaaaac actctgtaaa
      481 attattttct ttctgctata gtagaatat
//
LOCUS       KCOD01002063             965 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 229816pyr ultra-conserved element
            locus uce-1469, sequence.
ACCESSION   KCOD01002063
VERSION     KCOD01002063.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 965)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 965)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..965
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="229816pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>965
                     /note="ultra-conserved element locus uce-1469"
BASE COUNT          309 a          176 c          165 g          315 t
ORIGIN      
        1 agtgccttgg tactagagga ttagagtact gtacacagct ctagcaagca gaatgaataa
       61 ttgaaatcca gtgcttttat gcttcactga aaaaaaacaa tatttcatgg cacataaagt
      121 tattcagctt atttgcatta aggttgaatg atcaccactg accaaaacag aagcaatgat
      181 ggtaccttga tgtaagtggc aaagaacata cataaatatt cttaggaagc aagatgtacc
      241 tgcatttaat cagtacttat taaaatttta ttccctatag ttattcaaca ggatctgtgg
      301 tataaaaaca taattacaaa aatcagattt gagctcattt gacaacagaa gggttttatg
      361 gtgacctatc tccaaatgtt cctatttgta attaaatgca gcgatcagca gtaaggattt
      421 tgaagctgtt ttagtagttc cgctattctg cttaacatgt ggcacccgta ataattaaaa
      481 tgatactaac acatgcacaa ttttatggcc cttatggtgc aacccattat gccaaataag
      541 ggcctctgtt ttcacagcat actgcacatg gtctcattac acccactttt cttttcctgt
      601 cttcacacta acaactgtta aagtgaatca acacacgaaa cgtactataa cagcttagtg
      661 tttatgatat gtgtgctgtt agtcagtgaa caggaaaatc taaacattta ctgtttatgt
      721 aaagaatagc gttagtgtta gtgaattgct tgggtctgct tcctttatta tctagatcac
      781 aaacataatg atgggtgtca atggtaccta tatttcccct ttgcttcgct ctcctgtgta
      841 gatgtctata agaactagag gaacttcaca tttgcagttc tagaaatgtc ttctgttaag
      901 tagttttcct tttctgcatt aaagtgcagg aaaaatattt ctatcataaa ctcccaccat
      961 gtaaa
//
LOCUS       KCOD01002064             779 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 229927pyr ultra-conserved element
            locus uce-5719, sequence.
ACCESSION   KCOD01002064
VERSION     KCOD01002064.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 779)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 779)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..779
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="229927pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>779
                     /note="ultra-conserved element locus uce-5719"
BASE COUNT          253 a          134 c          181 g          211 t
ORIGIN      
        1 gaaattcttg aactatgtcg agaaaaagag gattattccc ctttaatccg ggtgattggg
       61 agagtgtttt ctagtgctga agcactggta cagagtttcc gaaaaaccaa gcagcacacc
      121 aaggaggagc tcaagtctct tcaaggaaag gatgaagaca aagatgaaga tgaaaaggaa
      181 aaagctgcct gttctgctgc tgctatggaa gaggattctg gtgcatcgtc atcttcatca
      241 tcaagaatag gtgaaaacac acagggagat aataacctcc aaaaactagg cccagatgaa
      301 gtgtctgtag atattgaagc agtcagacgg gtctatgata ggttactttc taatgaaaaa
      361 atagaaactg cctttttaaa tgcacttgtg tacttgtcac ctaatgtgga atgtgacttg
      421 acttaccata atgtgtactc tcgggatcct aactatctga atttgtttat tatcgttatg
      481 gagaatggca atcttcatag cccagaatat ctggaaatgg ctctaccatt gttttgcaaa
      541 gcaatgagca aactacccct tgcagctcaa gcaaaattgg tcagattgtg gtcgaagtac
      601 agagcagatc aaattcggag aatgatggaa acatttcagc agctcattac ttacaaagtc
      661 ataagcaacg agttcaatag tcgtaaccta gtgaatgatg atgatgctgt tgttgctgct
      721 tcaaagtgct tgaaaatggt ttactatgca aatgtagtag gaggggatgt ggatacaga
//
LOCUS       KCOD01002065             505 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 230140pyr ultra-conserved element
            locus uce-5025, sequence.
ACCESSION   KCOD01002065
VERSION     KCOD01002065.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 505)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 505)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="230140pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>505
                     /note="ultra-conserved element locus uce-5025"
BASE COUNT          164 a           81 c           76 g          184 t
ORIGIN      
        1 ttttaaaact tcctgcaggt ttgtaataat ttagtaggat aaagaagatt actatagcag
       61 tcgttttttc ttcaattagt atttctaatc acattagaca tgttttcagt atccagagag
      121 gatgcctgat ccctacagct atcgtgaact attaacttta attaaaattt acaagtctaa
      181 tgttgttaca tctgctaaaa gcattaactg ccatgttaat taccaaaatg ttaatgttgc
      241 gttaaaatat gaatgttccc ttttgacagt tcatctgtgg tttaattatt tatttttggt
      301 agaatatctc ctcgcataaa agcataaatg ctggctgaaa taatgagaca taatcggaaa
      361 acttcatcca ggaagaaaac ttaatacttc agaataccag ttgttagcag aaattcattt
      421 gcattccttg ctgtgtctaa aataaataca tagcacatgt ctaagatgtt atttataatt
      481 gcagcacatt cttctgcttt tgctt
//
LOCUS       KCOD01002066             831 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 230249pyr ultra-conserved element
            locus uce-6555, sequence.
ACCESSION   KCOD01002066
VERSION     KCOD01002066.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 831)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 831)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..831
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="230249pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>831
                     /note="ultra-conserved element locus uce-6555"
BASE COUNT          254 a          137 c          165 g          275 t
ORIGIN      
        1 agtcctatac tggagtgttt tgttacgttg ccagaactta agtgagctgc attgctctgt
       61 ttctgaactg ctgtgctctt tattgacaat gacaataaaa tataaagccg atatttaaat
      121 cctgcctgat tagtgcaaac agaaatattt gggggaaaat ttgaattagt tccacttcat
      181 aacagagtaa atagtggatt tcagccttca tttaaaacaa aaggtaaatc tcatacccag
      241 aatccagtct gtctcaaaaa attatttcct tggaagtcta aattgggatg ccgatgaagt
      301 ttcagaacaa aacgggtatt tttatacttt gttcatttca tatttatcac tagcttgttt
      361 gctaattttc atttgcaaga ggcaattctt ccagctaact ggctgcctca atgggccact
      421 gatttctttg aagtgacagt ctgtaaatat gcataaaaaa gagatgcaat tagcgtgtgt
      481 gtggttcagt gcagcctgat ttcattggca agtttaccca cagtgttgat aagctacatt
      541 atctagaaaa ttggccgctg aaaaacagca cctctgattg ccagcaaagg ttccagataa
      601 cagggtgctg aagagaaata taattgaggt tgaatatgtt aaccaaggtg tcacatgctc
      661 cttagaagcg ctaatttatc agcatgttgg aatttttatt aacatttgga atgcatttct
      721 accacactaa tgaagtggaa ttggcagttc aggttttagt tattgtcatt tctgagaagt
      781 taaatgtaat ttctcgttag acacagttat gtaaatatat ttgttcaggg g
//
LOCUS       KCOD01002067             605 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 230363pyr ultra-conserved element
            locus uce-6255, sequence.
ACCESSION   KCOD01002067
VERSION     KCOD01002067.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 605)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 605)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..605
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="230363pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>605
                     /note="ultra-conserved element locus uce-6255"
BASE COUNT          215 a          113 c           96 g          181 t
ORIGIN      
        1 ttcattttaa atggagtctt cttgaagcaa ataagtttcc taactaaaag ttgactgaaa
       61 acattgcgga atatagccac atagtatctt tgaacacatg ctttatgtta gagcatagag
      121 gctgcaacat ttttcactgt tctctgttaa atcatgcatt cagttgtttc catttataca
      181 gcatcaaagc agttgaaatc caattgaaaa gtttctttag acaaccattg tgcaggaaca
      241 tgatgtcaat attaataaag gctgaatttc cccttggctc acttcttaca gataagcttt
      301 tcaataatac actgcttgca ccaaaggtct gatgggactg ggaatagtaa aaaacactaa
      361 taaaagaatg ttgaatgttt ttatattaaa tttccccaca ggcaaactga aaagcctact
      421 tagagtacgc caatcaacat ggcacttatt aaatgtaaca agagtcctgt tacaacagat
      481 ccttaaagcc cctaaatatg aattagaaag taaagacaaa agacaattac agatgtattt
      541 ctaaattgaa gccctggaca catcacctga tactcacgaa catgacactg tgtttgatct
      601 tcaaa
//
LOCUS       KCOD01002068             743 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 230469pyr ultra-conserved element
            locus uce-7237, sequence.
ACCESSION   KCOD01002068
VERSION     KCOD01002068.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 743)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 743)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..743
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="230469pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>743
                     /note="ultra-conserved element locus uce-7237"
BASE COUNT          218 a          142 c          137 g          246 t
ORIGIN      
        1 aattacacag agagccaata ataggggaaa ggttaatgat ttctgtaaac caccaaattc
       61 acccgcccct gtagtttact aagaaaatta gggtttcttc atgctgagct tatgggagca
      121 ctttacccat atttcaaccc ttctttcctc tgagatcttt gacatcactg ctttcttgct
      181 ggagaattta cattaaggac aattataaaa caaaaatata ccaccattca ggaaaatata
      241 caacttctta tcagagggat gtggatgttc ttcttgccag tctacagaca tggagattaa
      301 atttcagaga gagatttatt ttgtgctatt gtcctgttat tcaccagagg attgtgcaat
      361 gcaagtaatc tgatcagaat aatgcatagg gacatatttc agaaaaccaa taattgtggt
      421 aacgttgagc tctgctaggt gccaaaataa agtccaaaat cactctccct cttttccaca
      481 attccttaat catggcatca taatgtgctg ctctgttgtc cattaaagcc acaagcttga
      541 agtaatcaat gctggacatt tggagattta ttgtaatttt agatctacag cacttttgcc
      601 ggctgaaaag caaaattata gtttataggt gtgccatatc ttacatttta cagcttttac
      661 ttctttgagc tggcttggtg cattgttggc ttgatttcct ttccacctga gtgctgcagg
      721 cttttttatg atgttaggaa gca
//
LOCUS       KCOD01002069             679 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 230576pyr ultra-conserved element
            locus uce-2369, sequence.
ACCESSION   KCOD01002069
VERSION     KCOD01002069.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 679)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 679)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..679
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="230576pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>679
                     /note="ultra-conserved element locus uce-2369"
BASE COUNT          171 a          150 c          169 g          189 t
ORIGIN      
        1 tttcagagtg gggctctagt ggcttgcagc catctttcag gaggctccag ttcaagctgg
       61 agttgttagt tacgctctgc aagggagcag cactcacaca aaaccaacat ggcagctggt
      121 gctggggttt catggacaca taacagccca aatgccatct atttgagcaa ttttttcctc
      181 tctataggaa cttagtgcag cataaacact tgcaatcatg cacttcctag gatgcatgtg
      241 ctatcgaaaa gggaggtgtt aattgctgtg ctaattacaa catgattgct ttgcacttgt
      301 tttgcacttg caggtgatta aatttttaac gaagcatatt acttggcact gttagcatag
      361 ttaacacatt tatgccttgg gagaagtcct ttcccttcac tggctgtgat gctgttgtgc
      421 ttggaatgag cccctgttta gtgtcggtgg cagtaccccg ggttccagct cggaaagagc
      481 agcagcctgt tatcatcagg ctcagcgtga cggcgccggc cagatgcaat gcagaaccca
      541 ccaaggtatt agctaaaaat taggcaaggc tgttgatgcc aatctcacag atttcattta
      601 aaaactatgc cagctcgagc cagtcaggcg agtggagggt gtgtggagaa atgacagcaa
      661 gttccccgtg atttatttc
//
LOCUS       KCOD01002070             752 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 230684pyr ultra-conserved element
            locus uce-5379, sequence.
ACCESSION   KCOD01002070
VERSION     KCOD01002070.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 752)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 752)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..752
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="230684pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>752
                     /note="ultra-conserved element locus uce-5379"
BASE COUNT          224 a          130 c          151 g          247 t
ORIGIN      
        1 ctcataattc ttctattacc ttgttcattt atggtttctg aactacgtca taaagaatgt
       61 atttgtttcc aggatcacag ctctgctttg ttctgattgc agtgttctgg ataaaaatat
      121 cctcctgtta cgtgttgtta tgcgatagat tgctgctgca ccgaagctgt tattcagaag
      181 aaatgtgcta tacaagggtg ttagaagtag cctgcaataa aggaaacgtt gtggtagaag
      241 caaaccagcg tagtggctaa attgtgaggc atcttgtttg gaaatcgaat ttaattaaaa
      301 agcactctca atctctagta atataactgc tttaaatttt cagacagtgg gagtagctca
      361 ccgttgccca agtatgcctc atctcccaaa ccaaacaaca gctacatgtt caaacgagag
      421 cccccagagg gatgtgagcg agtgaaggtc tttgaggaaa tgtcgtaagt aatgcctttt
      481 atatcagctg gtatctgcaa agcagtaaac ctgtttactg agcctattca actgcagatg
      541 aataaactat tccagctgat gggtttttca ggagcattat agtttgtgca gaagagaagt
      601 tgaagtgttt acattggtgt gaagattttt gtgcatttat aaaaaaaatc caagcaaggt
      661 acatttaaga atttaaaacc tctttccatg tattttaaca ttttaaattt tcatgacttc
      721 tctccatgtc ataattgcat tttgatgtgt at
//
LOCUS       KCOD01002071             496 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 230794pyr ultra-conserved element
            locus uce-2187, sequence.
ACCESSION   KCOD01002071
VERSION     KCOD01002071.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 496)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 496)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..496
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="230794pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>496
                     /note="ultra-conserved element locus uce-2187"
BASE COUNT          123 a          137 c          115 g          121 t
ORIGIN      
        1 ttgctgaaac cattccatct gacacaatac gagtgtcact ctttctcacc ttgcagagag
       61 cactgcctgc tcctgatcat gacataaaat actcacggga gttctcgaaa cactgagctc
      121 cttgccatgt gctgtagatg tcactgctgt ctgattgtgc ttaattactg ttttgactcc
      181 tgaaaaatgc ctaaaggata atgccactgt gaatttgaaa gaaatccgtt tcttcgtgtt
      241 tccatttaga aggcagagag tgtgtgaact gcggagccac tgccacccct ctctggagaa
      301 gagacggcac cgggcattac ctgtgtaacg cctgcgggct ctaccacaaa atgaacggtc
      361 aaaaccgacc tctcattaaa cccaagcgaa ggctggtagg tgtcggggat aaatcaggcg
      421 accacacaca tcgtgcctca tctctgccca gcccctgcgt ggagccgagt cactgccgtg
      481 cctcggggca catctc
//
LOCUS       KCOD01002072             547 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 230902pyr ultra-conserved element
            locus uce-4762, sequence.
ACCESSION   KCOD01002072
VERSION     KCOD01002072.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 547)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 547)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..547
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="230902pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>547
                     /note="ultra-conserved element locus uce-4762"
BASE COUNT          203 a           81 c           94 g          169 t
ORIGIN      
        1 agacttgatg cacacaggaa cggaatacaa aataatcagt cataatgtta cgacttcatt
       61 tttcatttgt gttttcaagt ttgccttgaa aatcagagat tgcactgaag gaaaaaagac
      121 aatattatat caaagaaaaa gggaaaatta taagcatgac ttatctttaa tgttttacat
      181 caaaatgaaa tttctgtgat acgtgtcatg tgcataaaca acacaggcag cttttgtctt
      241 tgttgaattt aaatgaaaag tccctctaga tattaatatg tggacttcat ttgttagcct
      301 gctaagtcag ggacttataa caaaagcttt gtaaacaaaa gattaaactg aatcgagctt
      361 tagaaaatga aaggaaaaca agagtcaaat aatcacagat cagagtgggg ctgcttagat
      421 tgaaatcact acaagctact ggagtggaaa atgtttaatt gaactatttc attacgcagg
      481 aagtttatgt ccctcttgta gaatccaaaa tatttgtatc agaaaatcca ttctccttct
      541 ttaaaat
//
LOCUS       KCOD01002073             729 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 231012pyr ultra-conserved element
            locus uce-432, sequence.
ACCESSION   KCOD01002073
VERSION     KCOD01002073.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 729)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 729)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..729
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="231012pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>729
                     /note="ultra-conserved element locus uce-432"
BASE COUNT          215 a          142 c          158 g          214 t
ORIGIN      
        1 ttttcagcag ttttttgcta gccatctggt agaagaaatg gtagggctca agcagaggag
       61 atcttatgta ggaggtaaac cagggtcaaa gtaaaaaact gcatctcctt atccctggtg
      121 ttggagacac agagccacta aagcaaatta gtttttatta aatgtgattg cagaaagtcc
      181 tgggaaggaa tgtgttaatg actggtgatt gaatgcagtg gtttgcaagc tctaagcagc
      241 tttagtgtct cctaccacag ccctgattta aaattcataa atgctaatcc tccataattt
      301 acggtttaaa aagcagcccc actcacaggc cctgtggcta cagctctgtc agagtaatta
      361 tgccgccaag ctgaaattgg actactaact gagatattaa acagggtagg aaatcctctt
      421 ccctggcagc ctacccaatt attccaaata agcaaacaga ttagtgagta attttccagt
      481 taaatctggt gattggtgcc agaattgtat gttaaatatt cagaagtaaa tagattaaag
      541 atgaaatgtc cccttttctc aagcttaatt tagtgtgtat attaaaactc tccattgaag
      601 tgcaatacgt ttgctttgaa aacagaacct ttcctggctt gtttgcactt ggggcagtgc
      661 gttcattagc tggggcactt gtgccgaggg aaccttgtgc cacattagac acagtatcag
      721 ccctgctgt
//
LOCUS       KCOD01002074             353 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 231118pyr ultra-conserved element
            locus uce-6310, sequence.
ACCESSION   KCOD01002074
VERSION     KCOD01002074.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 353)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 353)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..353
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="231118pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>353
                     /note="ultra-conserved element locus uce-6310"
BASE COUNT           91 a           73 c           58 g          131 t
ORIGIN      
        1 catcttccag tacattcctg ttgcttaaag aacatttatt ccagtattgt tttacccatc
       61 tttacttgtg gcttcttaaa gctgactgtt cttgcagggg ccatgtgctt ctcctagagt
      121 acaaaagtaa ggtctttcct tactaactgc agggtctata tattacacct caatgtacac
      181 actttgctgc tactgtttgt actgtctaca gtagaatttc cttatcttgc tcctggtagt
      241 gcattacagg caagcatgaa atgtaaagta tttatttaaa taaaaacctc taaattggta
      301 attgaattac ctccctgtag ctttagagtt tgtgacattt cttgaccttg cta
//
LOCUS       KCOD01002075             648 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 231221pyr ultra-conserved element
            locus uce-6806, sequence.
ACCESSION   KCOD01002075
VERSION     KCOD01002075.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 648)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="231221pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>648
                     /note="ultra-conserved element locus uce-6806"
BASE COUNT          213 a          114 c          135 g          186 t
ORIGIN      
        1 tttggtagta atagtacaca gagagacgta agaatcagtt ctaatgtctg cagacagcag
       61 tacatgcaag ttttacattt gcttctgcag aaaatgtcca atgtcaatgc acagaaatat
      121 gttagttgtt tatttttaga aacctctcta gaaagttttg catattctgt aatatcacaa
      181 aggacttctt ctgtttacag ttgcttagaa ctaagaagat agatatttac ccaagttttc
      241 ttggcttcct cttgctccct tgatattcta gagttccctg tggagagggc caagaacaca
      301 cagtcaaagc aaagcagcaa gtcgttaatt tttaattcaa agtgattttg tgttgaatgc
      361 aagcagatgc tgataatatc agaagtcaca gcataatttt tttgatcaaa gggctcaagt
      421 gagcctgatg aagcatgcat cttgctcgtc tttgataaac cacatcaatt attcaccgtg
      481 aaggcagaca tcctgacatg aaagcaacag ataaagagca taagcacatg ttcaagacga
      541 gagcagaaga acgtgggggt ggggctggag gggctgaaac aggtattaat aacagaatta
      601 ttaactggaa acaaagccag taaaacagct ttattgccac tttgaact
//
LOCUS       KCOD01002076             523 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 231322pyr ultra-conserved element
            locus uce-5087, sequence.
ACCESSION   KCOD01002076
VERSION     KCOD01002076.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 523)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 523)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="231322pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>523
                     /note="ultra-conserved element locus uce-5087"
BASE COUNT          125 a          120 c          144 g          134 t
ORIGIN      
        1 cgctgtaaat tgtacattta aacaatgaca ccgttttccc agtccgtttg gcaaacccgc
       61 catcagcctc agtgttgccc ctcacggcag caacagaagg gttaagcatg aactttaaac
      121 attccctgtc ccgcagcctt ttccatgagc cgaggtgggc ttttccttaa ataacgaggg
      181 tggtcccagc atactctata tcgagacagc ttttcatcag ttgctcatca gcatgctaat
      241 tgctgtatga ctaattatgc cctgaattcc agttgatttt cttaatgaga cagctgggtt
      301 aattatgtaa tcgtatgatt acattagccc agagtgccct ggcgaaaagg aaggcgggcg
      361 ggagtgggat gtcaccgggc gagggggcag ccgtggccgt aatgaccggg gaacagcgcc
      421 cgcggtgtaa acaccgggac attgagagct tcttccagga tgagggaggc aaaacgcact
      481 tggtcatcga tggttgtatt ttggggattg aggctgggtt tgg
//
LOCUS       KCOD01002077             455 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 231417pyr ultra-conserved element
            locus uce-3540, sequence.
ACCESSION   KCOD01002077
VERSION     KCOD01002077.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 455)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 455)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..455
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="231417pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>455
                     /note="ultra-conserved element locus uce-3540"
BASE COUNT          132 a           88 c           94 g          141 t
ORIGIN      
        1 tttcaagagg ttattaaaat tgaaaaatta tgcagcccat tgcttggttg tttctcacag
       61 gctcggtgct cagagagcga ccctggttct caggcacaca ggctctctga agagggtggg
      121 caatctcaca tagcactcgg aagtggcact tagactgtaa atattatatg ctgctgtaag
      181 aacatttgaa tggtaatact caagcaatta ctttcctttc aagatcatta aacacaaatc
      241 tgacttgtat tttaatagga ctgccaatgt atttaatggg gggcagtaaa gggtaggttt
      301 tttctaatgg atgaatgttt atattattat ccactctgag agaccacatt aggagaagcc
      361 tgtataacgc tcatgtgttt cgcctcagtc cttttctcac agttttcaat gcatcttaca
      421 gcacgatggc aaaaaattcc acctgattat gagac
//
LOCUS       KCOD01002078             752 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 231524pyr ultra-conserved element
            locus uce-5688, sequence.
ACCESSION   KCOD01002078
VERSION     KCOD01002078.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 752)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 752)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..752
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="231524pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>752
                     /note="ultra-conserved element locus uce-5688"
BASE COUNT          241 a          135 c          168 g          208 t
ORIGIN      
        1 ttttgttctg gtctctgcaa acttaagtcc atttcagcaa aaaatgatac aaaagagatc
       61 agtactatgt gctgagacag acaggctgac tgtctcagct ggcataaact ggtgtaggag
      121 agctaagtta ttttacccta gatgagaatc tctttattgt atctctcaga ataagccttt
      181 attgaaccaa gcccaagggg agaaagggag agaagaatga tggaatgaag gagaccaaaa
      241 ggtacgcagg gcagaagtac acaaaaccct cttcccctat cactgattac aaattattat
      301 acaagctgag ccccatattg tatacttcat ttacagtaat tgtacaacag ctgtataata
      361 ggtgtagttt aaggtatgag tgttgctcag agtgtagctt aaatgtccac agtgagatgt
      421 gaatatgaat atgaatggtc ctgactgcat agtaattggt ggtattatgg gagtgaatgg
      481 aaaagctaca tatggatgaa tgggtggggc tagggaaggg cgcagcacga gagactaatg
      541 gtagatttta ttttctcgca tagatggctt ttcctttaaa taattagcca gcggcagtag
      601 aagcaaatga aaagaaagag aaggagacta gtttggcaca ctgaagctct atactcatta
      661 cattaaatca ttccaatttc cctctcttca ccctacctac ctagccattg atccatccac
      721 attaaacttg ttacaagttc cagcgtgcat gg
//
LOCUS       KCOD01002079             695 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 231633pyr ultra-conserved element
            locus uce-638, sequence.
ACCESSION   KCOD01002079
VERSION     KCOD01002079.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 695)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 695)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..695
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="231633pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>695
                     /note="ultra-conserved element locus uce-638"
BASE COUNT          243 a          121 c          113 g          218 t
ORIGIN      
        1 aagccatttt caaaccctga aacaaattgg ctcctatata taagtttaaa ttatccatca
       61 ccctgaagga ggattcaagc aaaatcgaag gccatcttga tgaataatca aggtaaattt
      121 gtcacatttt ttactgtgct gcatactttc agagtttcat aaaaagatcc acataattag
      181 tttagcttac caggaagttg aatgacaagg tcaggctctt gccctttcag taaattagag
      241 aagattgcca taaattgcat aatataatga aacaccaatt tgcatatttg ctgctatatt
      301 aaaagggatc agttttagct cgcaaagcag aacaaataaa aacatgcatt ttaataactc
      361 aaattactcc caggaagtga ccctcagcag aaagcctgat tatcactact taattagaag
      421 ccttggaaat ctaaatcctc ctttaaatcc tattctgtgt acagtgaaag atgaagccgt
      481 gagttttgtc ttagattcaa tatttactct ttactaatat gtttgcaggg gagactttcc
      541 aagcattatg aagacatgca ttaatattca aagaaagagt gcataaaacc tgtgttggct
      601 tgcaggtgca aagcaattaa caagctggca tttgcagtac ttttaattaa ttaattaaaa
      661 attcaaagct gactttcatt tctttaaatg tttga
//
LOCUS       KCOD01002080             601 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 231744pyr ultra-conserved element
            locus uce-2694, sequence.
ACCESSION   KCOD01002080
VERSION     KCOD01002080.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 601)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="231744pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>601
                     /note="ultra-conserved element locus uce-2694"
BASE COUNT          222 a          100 c           84 g          195 t
ORIGIN      
        1 aaaagatgaa cgagcattct aatttgttaa ttaattgtta atagaataga ctcaaatatc
       61 gaaaagacta tttaaaacac tttgtaatac tgctctaaag ccacccgttt tgatttcttt
      121 gatatagaac tacgaatcac cttaaatgag acaaccttaa agtagattat gtctgcaatt
      181 ttctctaatt caagtctaaa ttagagaaga cattttatga atgtatgcta tgctcaaagc
      241 taattgaaag caattatcaa agtggcattt tgtctgtgac tttaagatac attgtaagat
      301 aataaatgat tctcattatg taataaaaag gtcacatctt gcctttgggc tagtgacgtt
      361 aagagttttt caaaagcaat ccgagacatt ttctttagtg aactacgact aatacaagaa
      421 ccatcactta ttaaatatca gttgtcacct gcatagtacc cacatcagag atgggtattt
      481 ctttcaaaaa gaaacaccac ctcattaaaa actggaaaaa tatatctctt aaagtgcata
      541 cctgacattt tcaagttaaa atgaatatcc ttcacttgtc attcactaat agtaatgaaa
      601 c
//
LOCUS       KCOD01002081             663 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 231853pyr ultra-conserved element
            locus uce-4086, sequence.
ACCESSION   KCOD01002081
VERSION     KCOD01002081.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 663)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 663)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="231853pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>663
                     /note="ultra-conserved element locus uce-4086"
BASE COUNT          202 a          138 c          140 g          183 t
ORIGIN      
        1 gttgttctct ctaactgaaa ctcaacactt ccaattactt taccagcaat ttacctccaa
       61 tcgtgggatt ttaagttaat cccctttgag ttctcagaac atctacaatg gcaatcactt
      121 tgcctattag ctgaacagcc ttttgggaga gctttctgct tttctctcaa aatattatga
      181 acttacaaag ccaaatgcca caaagacagt aagggataca cagtctgctc tgaagcagca
      241 gcaaggggcc tagcaatgag ggcagactaa ttttattaac ttcagggaaa cttcaaaaag
      301 ctttagggct ttaatgccag acagagacga ccccaaaagt cagtttaagt gctgcataaa
      361 caaaggatta gggcaagaaa aagctgaagg ctccttgcat ttcttgttta tattgtcata
      421 tgacctagta ggagtgggag agggctgcct ctctgacttt aatcccccat ggtgtacagt
      481 ggcgtttcag ttcactgacc tacattacga taatattaaa tttatgggca gaggtgcagc
      541 atcaaactca cttaaggact ttgaaaaggg gcgggaaggg aaaaataccc agaagagaaa
      601 ttttctggct ggtatagtct ccccctctca cttaggttag atcagcagct tagaaaggga
      661 ttt
//
LOCUS       KCOD01002082             248 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 231957pyr ultra-conserved element
            locus uce-5493, sequence.
ACCESSION   KCOD01002082
VERSION     KCOD01002082.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 248)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 248)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..248
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="231957pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>248
                     /note="ultra-conserved element locus uce-5493"
BASE COUNT           78 a           54 c           48 g           68 t
ORIGIN      
        1 agagaaagaa aagagaggaa aggggaactc gatttattct catttgttta tctctagatt
       61 ttcccccctt tctgcaaatt catttgaata gctttcaagc tgcaaaatgg aaatgtggct
      121 cctgccctct atttcagcag cagcgtcctg gcaacagagc aattttctat catcaaggat
      181 aaatggcatc gaacagaaca ttctgatgaa aaaaagcttt agcccaagaa gcccatgatt
      241 gctgccct
//
LOCUS       KCOD01002083             676 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 232062pyr ultra-conserved element
            locus uce-7703, sequence.
ACCESSION   KCOD01002083
VERSION     KCOD01002083.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 676)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 676)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..676
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="232062pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>676
                     /note="ultra-conserved element locus uce-7703"
BASE COUNT          243 a          125 c          113 g          195 t
ORIGIN      
        1 cacaggagct ccaaagggat gccctattga aagagaaaag cagcattgta gtattttaaa
       61 agctttaaaa taaaacatat ttaaggatat caatttaact tgaaaatcgt agaaaagaag
      121 ttatacttta tgttctaaag aatatcccat attcagttaa taaactaaag tatttaaatg
      181 tgcttagcac tatacagtgt tagcaaacac agttgtcatc atcaaactat tgtctcacat
      241 gcactgtata agatttgtaa caagaagatg taaatgatca ggactaacat ggcattactg
      301 gcggtggtgg ctgacaaagc tgttgttgaa actactccac acttggcaca tttgagcgtc
      361 aaaccgctat gaggctcact catctgactg caaacaaaca gaacacccac aaaaagaaca
      421 aaatattgaa tcgtcaccaa acgttgctac tgaaatttag cttttaaata tgacgtcatg
      481 cattcgagat gaatgctcta tatttctgat tttgtacttt acgttagctt taaatgttaa
      541 tgtggggctt aattccatgc aaactgtatt tcttccattt aatctaaaaa aggccccaaa
      601 tgtgatcaaa actgctcagt aaacataagc acgtgctagg atagacacac aaagtgaaat
      661 ccctctattc agacct
//
LOCUS       KCOD01002084             636 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 232172pyr ultra-conserved element
            locus uce-3648, sequence.
ACCESSION   KCOD01002084
VERSION     KCOD01002084.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 636)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 636)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..636
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="232172pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>636
                     /note="ultra-conserved element locus uce-3648"
BASE COUNT          173 a          126 c          143 g          194 t
ORIGIN      
        1 caggaaaaga gctcggcatt ttttcctttg catggtagaa gttagaggtg aaacacaatc
       61 atttcagtct ggatcagact atcctttaga agtctaatta aaaaatcgac tgacaaggtt
      121 cattcctctc cgctgatgcc tttgtatgta cgctgggcat gcagtaccta agtcagatgc
      181 tgctttgtta taattagggc agcaaatttt gttttctgtt tggtacttgc tgttacatat
      241 tgcatgtaat gtatggcact gttaagggaa aaaaattgga gtcaaagtgc ctggaaagtt
      301 aggtctgctc tgtagcactg tgagattgtt gacatctgcc gaggttggag agctcagtaa
      361 gcaggaaatg gggtgtcact ctgagtggta gtttaccatt atcctggcat cctaatgaag
      421 tgtctgcagt gcacagagct tctggatggc atcttaacgc acggctaagc aaaagcactt
      481 ctctccttgt cactgtcatc catctgcctg caccctactg tagccaatgg gatggaacca
      541 tgctacaatg tgctataagc catttagagt tgcacattgc ataatcagtc ccatcaaata
      601 tgtaaaaaat gactattatt ggttatttcc ctcaaa
//
LOCUS       KCOD01002085             674 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 232283pyr ultra-conserved element
            locus uce-7224, sequence.
ACCESSION   KCOD01002085
VERSION     KCOD01002085.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 674)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="232283pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>674
                     /note="ultra-conserved element locus uce-7224"
BASE COUNT          221 a          130 c          118 g          205 t
ORIGIN      
        1 gacagaacaa gcagaattgt taagtgcttc caaggttctg ttgtcagtgt tataccaagg
       61 catattagtg ctgtctacca agtgcaccaa caacacactt gggacacacg cagaagtcta
      121 ttcactaggt cagggacctg aaaatatttg aaattgttct ttagaaaaat aaaataaccc
      181 agactctttt tgcattactg tggtctttca aagtccatat aaagtattac gcaaggagac
      241 aaagctattt taccaggcag gcagatattc caaattactg gttcttaaca agcatggtaa
      301 tacatcagtc aaaagcaata aatttaaact taatgaaatc tcaatttgcc tacagtgcat
      361 ttcactttga cattttctac attgccacgg tgctttgata aagtttttta aaatgcaaag
      421 aaagtgtctg taaggctaaa gagcagactt ggtgccattg tgcccagtgg aacattacag
      481 tacttaagtt ccatcactat atgccctgtg gcagactaag cctgagtgct aacataggtt
      541 cagttttcat tatcatcatg tgattatcca ttttactgca tttaactgat aatacaacta
      601 ccagctcacc ttaaaagaat tagcttggag gtttcattgc tttccaaatg gaattcattt
      661 gacaaacaaa tgac
//
LOCUS       KCOD01002086             590 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 232393pyr ultra-conserved element
            locus uce-2772, sequence.
ACCESSION   KCOD01002086
VERSION     KCOD01002086.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 590)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 590)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..590
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="232393pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>590
                     /note="ultra-conserved element locus uce-2772"
BASE COUNT          161 a          158 c          119 g          152 t
ORIGIN      
        1 aaggagtgaa agacagaact cataaaaaac ctgtaaaaat ccaagtgctc cagctattac
       61 agatttctaa aaataaagca gagtaggttt cagtagcaat aataagctgc atcttaccca
      121 tatttcagat ttataagaaa aatatggctg ccttttagta ctcatggctc agagcaaacc
      181 atggctgctt caccccacaa ataaaagtga gctttcagct tgctgttgtg ttgcgtttca
      241 tttgtccttt aagtgtgtca gctgctcctg cacccccttt cacaatgcat aggctgtcgt
      301 tccatgacct agcattatta aattgcactt atcaatcatt cttgccagga atgccatcgc
      361 caactacatt aaagaagtca gagaagtctg gtttcagcag tccctcgcct tcgcagacct
      421 cctcccttgg aacggctttc acacagcacc atcgacctgt cattacagga cccagaggtg
      481 aggcctttcc cgagagcccc caggcatgcc gtgccagcgc cgctccacgg aaagccatcg
      541 ccacctgtga cagcgagggg ctgtgctcag aaccttcact ggttctgtta
//
LOCUS       KCOD01002087             895 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 232504pyr ultra-conserved element
            locus uce-662, sequence.
ACCESSION   KCOD01002087
VERSION     KCOD01002087.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 895)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 895)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..895
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="232504pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>895
                     /note="ultra-conserved element locus uce-662"
BASE COUNT          280 a          151 c          161 g          303 t
ORIGIN      
        1 tgtatggtat ttgctcagtt attgctatct gaattacact cacatgcatg attataattt
       61 actataatgt ttacaaccaa ggttttcatg tggttttaat ttacattgca attaaatgag
      121 gagagcatca gacatcaggg gttaagaggt accttatcta caaatcataa aaattggtta
      181 gcatttgaaa acatcaaaaa gagcctgttt atttaaataa agatttttta tacttgctta
      241 tctttcatta tacagctata ctgttttgca gaaagttttt accccaagta aatttctcat
      301 ttgttttttt agtgtttgtg ttcaataata catcgattcc cagcagcagg gaagagtgag
      361 agatttatgg tgtatgattg tgtcatgtct tgttttatca tgtcgataga tagaaaattg
      421 accacaacta caaaagccta tttataattc tatttgatca ccatgggaac tcatcaaaac
      481 agagggcagc accgaagttt cattaacaga tcatctcaga tctcctgctg tgtcctgtct
      541 tcattttctt ttcacatcat ccttttgctt agagccccag catcagagag gaggtcagag
      601 caacagtaat ggcacattta ccattcccca ccatccccca gattaatatt aaactgttaa
      661 aagaaaatga gagtttattg attgttttaa gccaggcatg ttctagcagc aagccgttat
      721 tcagattcag tgagtggcaa tagataactg atttcaataa gaagacagag aagaatgcgg
      781 tccagggatc agaacagaga gagaacaatg gcagaggaat gtttaatctt ttttatggca
      841 ctaatcgtta cttttgcaat ttgtgattgt ttatagatca tttcttttaa gtcca
//
LOCUS       KCOD01002088             585 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 232616pyr ultra-conserved element
            locus uce-4662, sequence.
ACCESSION   KCOD01002088
VERSION     KCOD01002088.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 585)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 585)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..585
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="232616pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>585
                     /note="ultra-conserved element locus uce-4662"
BASE COUNT          172 a          147 c          105 g          161 t
ORIGIN      
        1 attaattaaa cctgtattct ttgcaggtcg cctattgcag ggctgtggtt tattcttgct
       61 ttttctgctc ctttggggga tttcaggcat gttatttttg tgatttcgca tctgccacaa
      121 gaatccttct aagagacaga aagtgaaagg ctcggttaag aaaaacacag ccacctccaa
      181 agtgctaaaa ctgcaataaa cccatcatct ctaacaacag tggcatgaaa agataaaaac
      241 caggctgcca agaatgtagt aaccacccat tcacttttaa atgctctcca cacttcaatg
      301 cacagaccta attacttttc tgcattccca aatccacttt gcagggctgc aaccagaaac
      361 ctggtgttaa aatattttag actctaagga tcaagactaa ttatgggcct aagctgcacc
      421 tcttggtttc cttacgaagc agcctgcccc ctcccccatc cactccacct ccttcccttc
      481 ttttgggatg ttttaaagca tgctccacta gaagaaaggc tgtccagtct cagccggggg
      541 tgaagtaaag agagaataaa acaaaaagct actcagtcca attca
//
LOCUS       KCOD01002089             660 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 232727pyr ultra-conserved element
            locus uce-411, sequence.
ACCESSION   KCOD01002089
VERSION     KCOD01002089.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 660)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 660)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="232727pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>660
                     /note="ultra-conserved element locus uce-411"
BASE COUNT          209 a          110 c          119 g          222 t
ORIGIN      
        1 tacatcttta atattaaaca caacagacga tataatcaca gaaataatac cagtaacttt
       61 caaggtgtaa aactgtagtc aattttcttc atgtttatca agctgtgcat tttaaggctt
      121 tctgttggat tagcaagagt ggaaagcaga gtgctctata cattccacag atctgctttt
      181 taagaatcaa catggtgcac accatgtgaa ctgtcacatt aataaccctg tgctgatatt
      241 caaattttct gtcttaagct aaagaaagat tgaataccct gctgttgtgt ggccaagatt
      301 gaagaggtgt ctcactgaca ttgttcaaag tttatgaaaa tatatgaatg ctcaaatgtc
      361 attggctttg cgcctccaac agactgtggt tttatgagaa atcagtcttt taatcaaaat
      421 gattgaatac cttaaggtca aatccaaaga tatcagttaa tatctagaaa cgtgctattt
      481 ctgcgtattt tgctaaattt gtggagcatt ttaaagtgtt aatttgtgca tcccatattg
      541 aaaattgatc ttgagtttta gctttttgtc aagcaaaaac atatggttac aagctctatg
      601 cattttatgt gacggctgtt gaagctgtca catgtgcaaa cttgataacc gatgtgacac
//
LOCUS       KCOD01002090             620 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 232839pyr ultra-conserved element
            locus uce-5022, sequence.
ACCESSION   KCOD01002090
VERSION     KCOD01002090.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 620)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 620)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..620
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="232839pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>620
                     /note="ultra-conserved element locus uce-5022"
BASE COUNT          198 a          122 c          108 g          192 t
ORIGIN      
        1 aacaaaaaca gtattttcag aattccactc tactgctttc agactatttc catcaaccct
       61 cttattcatt ttgatttatt tccatccata agcagactaa cgcttttcta tgcttttatt
      121 gttcttcaag aataggcctt ctattggaga aaaataatgt ctctacgacc accactttgc
      181 tcaatgcaga tcttcattaa tctgcagcca cagtacaggc ttttagcagc aagcactttt
      241 gatgggaatt gaatttgata ctgcattatg gttgtagggc ttctcacaat agactgtgtt
      301 cttttctgtg tctgtgcaca atcagagaga cccaattaaa taatttggtg caataatgga
      361 gaacaaaaga gtatgagggc ttaaagtgag ggcttcagca tttgtattct cccttttctg
      421 tatcatgtta attaatttgc ctgaaaacca aaagaaagaa cataatgtga aaagcatagc
      481 tcatctacaa catggaggca ctttaaatgc agataccaga ccaaatcaac atgtaacaaa
      541 ggaacattca ttgcatttcc ataagaaagt tgccagctaa tgctgagtgg tcctagttat
      601 ggccactgga aataaggaca
//
LOCUS       KCOD01002091             431 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 232942pyr ultra-conserved element
            locus uce-365, sequence.
ACCESSION   KCOD01002091
VERSION     KCOD01002091.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 431)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 431)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="232942pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>431
                     /note="ultra-conserved element locus uce-365"
BASE COUNT          139 a           81 c           81 g          130 t
ORIGIN      
        1 agcaaaaagc ttttgctttc ttttctattg ctttgcagac ctaaggccct gctcagattt
       61 ctgcatagtt aatttatcag tttataaatt accacattac gttaacactg aatgcttcaa
      121 aacacaaata tatgcacaga gggcttgaat atttgaagtg ttttagtact atagggaaat
      181 aattttgttg tcaagctgtg gcagatatag aagtgctagg ggatacatga ccatttcatc
      241 aggacgatgt tgatgatggc ctatgaacat ccaaggggag aaatcatctt ttatcactat
      301 tgtgtaccac acaggtccag atggaggata aaacatgcat gagttgcctg cagctctgaa
      361 aataattata ctcatttgcc agaaatgtaa aaagtgcatc caaccaagtt accacccatc
      421 atactgacac t
//
LOCUS       KCOD01002092             374 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 233045pyr ultra-conserved element
            locus uce-7752, sequence.
ACCESSION   KCOD01002092
VERSION     KCOD01002092.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 374)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 374)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..374
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="233045pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>374
                     /note="ultra-conserved element locus uce-7752"
BASE COUNT          107 a           53 c           68 g          146 t
ORIGIN      
        1 cattagttga gataatcctg gtgttctgct tgtcttttgt gttagatatg agctcctgag
       61 acgtaaaatc cagcaaccac ttgcatcaaa tccccctgaa gatttaaatc tgtggcacaa
      121 tatttactca ggaactcagt ggttttatga agataagggt cttagcaggt gagattacaa
      181 aaactataaa aacaaatgct ggcattttgt atagtgtatg tttaatagtt caaagtattt
      241 cttgtgtctt tatgtagtga acatattaat tatgtaatga aatatttttt gtcatcatct
      301 ttggtgttaa tcattttaat atgcagggat ttattattag tctgtcattc ttgactcata
      361 cgttgttttg cttt
//
LOCUS       KCOD01002093             758 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 233155pyr ultra-conserved element
            locus uce-1539, sequence.
ACCESSION   KCOD01002093
VERSION     KCOD01002093.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 758)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 758)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..758
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="233155pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>758
                     /note="ultra-conserved element locus uce-1539"
BASE COUNT          214 a          146 c          153 g          245 t
ORIGIN      
        1 gacatgctcg tcatgaaaaa gaaccatttc tgaagcccgg ttggggccaa acatttacca
       61 cctttgcttc atagtaacca gtcgagatga agcacgtcct tagaactttg ttggacaccg
      121 tgttgaaatt accccccatc ggttgtgaag aactgtgcta cattcaggct aaccattgaa
      181 ctcagttttt ccctcctgcc tttttgtctg gcaggctact gttcttgttg ctcttctgtg
      241 taatgaagtt taaatgcttg tttggaacac tttatttaac agtttagaag gcttgataga
      301 aagagtgctt tagtctgaag agtatacatt ggataggaaa gtatttcctt ctcttgtttc
      361 tcaagtctct ctccgcctta cttagcttga gatctttgca gcttggttca tggattctag
      421 ccttgcccgt tgcgcagtat atcaattgag aggataaacc aatgaactaa aaagcactct
      481 cagtatcaca tttgacaaaa agttttgtac ttttcacata gctcgttgcc ctgcaaaggg
      541 gttaacagca caatttttta aaaataaatt atttatagga ttaaaatgac ttcatttgta
      601 tacatttgga attaaaacaa tgcaagaagt gtcgtgaaac atggtatcac tgatgctttt
      661 ctggagtgtc ctgagaccca atcaaaagca gtggctggaa ggagatttat ataggcagtt
      721 ttcagatgga gggattcact gtccatctta acagataa
//
LOCUS       KCOD01002094             262 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 233260pyr ultra-conserved element
            locus uce-2970, sequence.
ACCESSION   KCOD01002094
VERSION     KCOD01002094.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 262)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 262)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..262
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="233260pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>262
                     /note="ultra-conserved element locus uce-2970"
BASE COUNT           86 a           48 c           62 g           66 t
ORIGIN      
        1 ctgaaaagtt caaggtttca tgtagatttt tagagcaagg gatctgcagg tatggtgccc
       61 agtgtacttc agcacattcc caggaagagc tcacagaatg gcaaaaacga tatgcttccc
      121 gcttgatcag attaaaacag caaaaggaaa acaaacagtg ctcgggcagt tatatggaaa
      181 ccctgattga gaaatggatg aattcgttat ctcctgagaa agtggtaagg aacatattta
      241 aaacagcctg tttttggccc tg
//
LOCUS       KCOD01002095             275 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 233364pyr ultra-conserved element
            locus uce-886, sequence.
ACCESSION   KCOD01002095
VERSION     KCOD01002095.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 275)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 275)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..275
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="233364pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>275
                     /note="ultra-conserved element locus uce-886"
BASE COUNT           86 a           46 c           52 g           91 t
ORIGIN      
        1 aaaaaaaatt aaaagcgtct cagtttttaa agcagaacta cataatgtat taattggttg
       61 ctattagcat gcagttttat tgagcatagc acacagaagt ctgattgtaa gcgaggagtg
      121 ttttcaatga aagtggagtt attttagctg cagacatgtt tacatttctg tggtttagtc
      181 tataactttc tctttttctt gcttcagaat tctgctccat gaagcaaagc ccttagctcc
      241 cagacattcc aaaaagtctg ccaaaataat agggg
//
LOCUS       KCOD01002096             688 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 233472pyr ultra-conserved element
            locus uce-5808, sequence.
ACCESSION   KCOD01002096
VERSION     KCOD01002096.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 688)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="233472pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>688
                     /note="ultra-conserved element locus uce-5808"
BASE COUNT          216 a          142 c          153 g          177 t
ORIGIN      
        1 aatgtaaagg ttctagctgg ggatggagat ccaaatcctc actccatata gatcggtggt
       61 accagatgcc ctaatctaca gttgttgaga acctatacaa aaagtgtctg aaggcctcag
      121 ggccagattc tgaggtcatg ttgctacgag gtgaagaact gatctgaaaa ctgtgctagg
      181 gcaaataata ccctcttgtc tcacattaaa accccctgaa gtgccactct ggttgttgag
      241 tttattgatt tcccccagcc catagaaaca gaaaaagggg atggggtgca ggcaaaggga
      301 tggaaataga aagctataaa ttatttgtga caggaaagca atagtgccag agtgctgagc
      361 acaagtcccg tgtcactatt agattccttt tagcctgatg acactgtaaa agaggttaag
      421 tgtctgatgg aatcgtacac cttgggggca ggggcagtcc aggagcagaa caagccacag
      481 agagcgggta tatcaattct ccaggccaat aatattcccc tcattgatcg caacacaaag
      541 ttcaaaaatc tcattatagc caggcagtcc tggaactttt taaaaatcaa tagagtgata
      601 taatgtatgt atactttgta taaatgtttc tatccatcca tctaccaaaa tctgcctgag
      661 ggtgcctaac ttaacctaca cattatac
//
LOCUS       KCOD01002097             614 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 233585pyr ultra-conserved element
            locus uce-2361, sequence.
ACCESSION   KCOD01002097
VERSION     KCOD01002097.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 614)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 614)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..614
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="233585pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>614
                     /note="ultra-conserved element locus uce-2361"
BASE COUNT          163 a          145 c          170 g          136 t
ORIGIN      
        1 agcggagcat tgattaatta ttcccgagtc gctccgaatc gctttcattt gaagagcggg
       61 aaggagaaag gctgtccccg acaaaggagg ccgatttgac acccactgaa gtctatcttg
      121 tcagcgcaag gccaacaaca attagcagcc taatcccctc tgagctggga agccattact
      181 caccacgcga tagcgttaac aatcaatacc atcacaatga gcccggcaat taatgaagct
      241 aaagtcttac ttcagaacct taattctcgc tgtgtggctt taaacgggag ggtttgtgat
      301 cgttataatt aactggtggt attcagccag gagttagtca atgaaactaa tctggattgg
      361 agatgacaag aggcacagtg tgatggtgtc acctttgttt tctgacctcc cgcttggcga
      421 tagcagatta gcagcccggg ctgacaggca aatgtaatta acagctgaga ccctggtgga
      481 atcaaaccca ccctgcggac agccccgggc aggacaagag gcagcagggc aggcggtggc
      541 ggggctttgc tggaggtcgg tcaggatgag gctgtggagc gtgtcccagc acacctgtga
      601 gcccataaag atgg
//
LOCUS       KCOD01002098             388 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 233694pyr ultra-conserved element
            locus uce-5663, sequence.
ACCESSION   KCOD01002098
VERSION     KCOD01002098.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 388)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 388)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..388
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="233694pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>388
                     /note="ultra-conserved element locus uce-5663"
BASE COUNT          108 a           59 c           66 g          155 t
ORIGIN      
        1 ctcagttggc tcaaaagatt ataggaaaaa gaaatctctc aaaatcctga gaatctcaga
       61 gcaaaatacc agcctatttt gacacagcta aacactttta attctcagaa tttttcttaa
      121 ctgtgaaaca tgggtagggc actgaaacat gcatttttat atttttgctc cttatgaacc
      181 agataacaca tgagatgcaa tgaaattttc ctagatgtca atttttaatt ctcttacctt
      241 gaagcatgaa agtaaatggt tgctagattt ttttggtagt gattgcatct tatgtgggat
      301 gtatctggtc ttttattatt tgttttatag tgtcatttca atgtaatgtg ctgttctttg
      361 tgtctttgtt gtctcttttt tttctttg
//
LOCUS       KCOD01002099             621 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 233803pyr ultra-conserved element
            locus uce-3799, sequence.
ACCESSION   KCOD01002099
VERSION     KCOD01002099.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 621)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 621)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..621
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="233803pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>621
                     /note="ultra-conserved element locus uce-3799"
BASE COUNT          177 a          107 c          143 g          194 t
ORIGIN      
        1 tctattatat tcatgctgca atgggttgct gtagtggttt ggatcattta catgacattg
       61 tttctatggc tacgtaggtg cccaataaag aaagagggat tcaggaacgc agtaatggct
      121 aaattatagc aatggtcgac agagtaaggt accgactaag attagaagat gagctacaga
      181 caattaaagt attgcagtat tagcagggca ggtcctgctt aggaaggctt ttaacaatta
      241 tcaacaattt tttagaaaag agccacagtt tacatgtgca gtcagttgct ttctaattgc
      301 tacagcaggc taccactggg aagaacaaag gaaatattta gcacatcgta aattcttctg
      361 cagccctgcc gagtggctgg agttcagatt acaagtttat aaccaacatt tgagagcaat
      421 ttctcctcca ctttgagaaa gtgggtgggg aagctgttcg acactttctt caaatgcctg
      481 aagtaatgtg tgtctgaaag aaatgtcttc cacttgtctt ttgattcagg cttgtactgt
      541 tatatcttca gatgagagtg ccattgttgt tcctgttgct attactatta gcactattgc
      601 gggagatttg ctggaatctt g
//
LOCUS       KCOD01002100             569 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 233916pyr ultra-conserved element
            locus uce-2858, sequence.
ACCESSION   KCOD01002100
VERSION     KCOD01002100.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 569)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 569)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..569
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="233916pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>569
                     /note="ultra-conserved element locus uce-2858"
BASE COUNT          160 a          130 c          119 g          160 t
ORIGIN      
        1 ttgctcctat cttctgcacg gagcctacct tgacaaagtt cctcttgcta tctttagtct
       61 tctccctgga gcatctgaca caccaggaca agagggatct cagccccaca gcttcatttg
      121 ggcctgttaa ctgtaactac tgatgtcgtt tacaaggata aacccttaaa gccaggccaa
      181 ggtagacaaa gaaagaacac tggagtaatt ccctttggac agcagagatt ggtgttcaag
      241 ttattgaaaa tctgtgtaac tcattttctc ttttgtcata cttaaaaaat ccatgaagtt
      301 tggctgagtg caaacaataa gcttttatag ttgctgccct tgttcataaa tgtgtaatct
      361 tctgggacca tcagaaaagc tttggtacag caaattaaaa gtctctaaac tttcctgtgt
      421 ctccttggac gttttttaga cctgcaaata tcaagcagta atcaatataa taaggcaaac
      481 tggcagctcc cgagtcagag agcacagggc agctttctca cggctagatg tggctcctgc
      541 cagggtcaca gagcaggctg gcacaggca
//
LOCUS       KCOD01002101             551 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 234028pyr ultra-conserved element
            locus uce-350, sequence.
ACCESSION   KCOD01002101
VERSION     KCOD01002101.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 551)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 551)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..551
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="234028pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>551
                     /note="ultra-conserved element locus uce-350"
BASE COUNT          178 a          107 c           97 g          169 t
ORIGIN      
        1 aagtaggtgt tgtataacag attacgggga tgcggaggac atctgcccca ctcagtgaac
       61 aggccttgga acagatgtct caaatttctt caaatccaga acatgctgtc catttttctc
      121 ttttttcctc tctgagcacc taagtattat ctttaatgca taaaatatgt aaattcttaa
      181 agcatcattt tgctctttag tgagtttaga tattacaaaa cggtttaatt ataaaaacag
      241 acagacctag tcctgggacc tgtgcagcta gaaataaatg tgcaatcaaa actgcaatta
      301 cctgcagaat ttagtgtaaa cagatcagca atcacataac aaacacaggc tagtttgcat
      361 tctgatatga atacagttag atccaaagca attttccttt atttatctta gctgctcagc
      421 ataaataaag caagggcatt gaagcaatta gcataattag agtaccgtgg tcaggccctg
      481 tgtgatttct agagacgttt cacttaagaa ttctttttcc cgtacaagag tttccctgag
      541 ccactaaaat a
//
LOCUS       KCOD01002102             720 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 234136pyr ultra-conserved element
            locus uce-3981, sequence.
ACCESSION   KCOD01002102
VERSION     KCOD01002102.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 720)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 720)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..720
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="234136pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>720
                     /note="ultra-conserved element locus uce-3981"
BASE COUNT          212 a          153 c          141 g          214 t
ORIGIN      
        1 tatgtgcata aggcaaataa agaaataatg gaaaggtatc caaaccttct acatctgtgc
       61 agtaacctct aattctaagc acagtgatga actgtaagta aattttacca tagagccatg
      121 ttttccttag cctctccatc tgctcatttt tgacacccct gtcattaact gtcattttcc
      181 tttaaatata cagtgaagct gaaaggccag ctctacatca catcatttca gattaggggc
      241 agttcctttg agctgagcac tgtttaggtg tcagaaagaa gtctctgacc tctctcgtac
      301 cacactgccg cagggcctta attagtactg actccagcca ttactgcaga gaggacaaag
      361 gcgaccacat catttttcta cttaggaagt tagcgtctga cctaataact tgtccaggct
      421 cgcaggacag tgtaatggcc gcacaacggc agtggggatt atttgtcaga ttctttgctc
      481 ctctaaatgt acgaaaatca gggaagttag ctattatatc cttccgtctt gcatgttgat
      541 ctgtcatgga gaaaatgaca gacagcaaag gagtcagata ttcagaaagt gtgataacaa
      601 agtgttagaa gtatctgatt atttaaaata tcactcatct tccaagatct gttctggtgt
      661 tcagtggaat tttatcactt atttcatgaa gaacctcaag tcctgagtca aatgagctcc
//
LOCUS       KCOD01002103             852 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 234359pyr ultra-conserved element
            locus uce-6410, sequence.
ACCESSION   KCOD01002103
VERSION     KCOD01002103.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 852)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 852)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..852
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="234359pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>852
                     /note="ultra-conserved element locus uce-6410"
BASE COUNT          280 a          179 c          151 g          242 t
ORIGIN      
        1 aatgaatgtt acacactgaa agtgccataa ctgattaaac tacaatttcc cactaccaga
       61 tagagagaga cttgagaact ccagcagtgg acagctctga tgttctgcca acaggccttc
      121 ggggcacagt gtggtattta gaaaaacaca ctgtaaattc catatgaata tattctaaaa
      181 gactatgtgt atacaacagg ttttaaagaa cattagatga aacagcttag gttcgtagca
      241 gatgagccat gcaaaatgga tgtgttttaa caattttaaa agaattacaa gacagcgttg
      301 gagaatattt ctgttgggtt cctctgcccc tctccccacc tccccaaaca ttgcttgtgc
      361 tttgctttca cataaaatct ttcttttgtc agtctctttg tcggtgcaaa attggcagtg
      421 gttcaaattc aaagtactcc tattcattta ctgaccatta aaccaatgtc attctagttc
      481 acatcagcca gagagctaag ctctaaaaaa cataaaaggc ttgcttcacc actgacgaat
      541 aatgtgtaca tttttacaga gcttaaacct taatgctttg cctgaaacta acaatacagt
      601 ataccttatc attccttttt cacaagcagg cagctgctga aacgcttgcc acttcaaaat
      661 atcaattgct tgccagagtt gtcctcaaca caccctgtca aactcatgta tattgtgcaa
      721 tgaaaatggt gcaggactga aagctagaaa ttgtgtcaaa ttctgctgta agggtatgat
      781 gtgcaaagaa caatgtatga caaccgtaga gactacaaac aatagcaatg gagccagaca
      841 ctacatatat ca
//
LOCUS       KCOD01002104             325 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 234462pyr ultra-conserved element
            locus uce-6016, sequence.
ACCESSION   KCOD01002104
VERSION     KCOD01002104.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 325)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 325)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..325
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="234462pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>325
                     /note="ultra-conserved element locus uce-6016"
BASE COUNT          116 a           65 c           76 g           68 t
ORIGIN      
        1 tgtcttcttc taaaaggagg ggggaggaac aggaaagaag taagaaaaaa agccccaaat
       61 gaaccctagt aagtagaagc tggtaatccc taaagcctca gagtagagtg caaagccctg
      121 gaagaaagaa attaataact ttcaaagtat gaccttgaaa atggaattaa cagtattcct
      181 cccttttaag ccttcatgat aataaagatt tcatcttccg aagccctggc aagagagtca
      241 acagactagg aaaaattgct tcctgcagag cagctggcaa gtgaaacccg gccccaggga
      301 gtgagatgac ctgcatggtg cacat
//
LOCUS       KCOD01002105             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 234566pyr ultra-conserved element
            locus uce-5294, sequence.
ACCESSION   KCOD01002105
VERSION     KCOD01002105.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="234566pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-5294"
BASE COUNT          173 a          130 c          152 g          179 t
ORIGIN      
        1 tcatggccaa tggtatttat tggatcatat taaaggtgtg ggaattgctc tgcaggctct
       61 ttagctgcct aaattaagtg tttagaaaga aggcaaaagg gagaaaagtt gaagaggtga
      121 agaagctttc ttcctggcag ctgggctccc tgcagttgac taaccccagt gctcgacagt
      181 ggtcatagtt gctttggaga atcacgtctc agctcttttc tctgcaccac gccccccctc
      241 caaaagcaag gaaatggatg tgcattgatg taatttagta ccttggagac gcggacaaat
      301 tagtgtagaa cattatcact agttaattat gaatgaccga ttaatcaacc taatctaata
      361 ttccacatta tgttgatgtt attaaagtgc atcatgaaaa tgacagatcg tcttcatttg
      421 cgttctttgg ccaaatgtgc actctgcagt catgatgtca aatagtttgc cagtttgaac
      481 atccgagtta agtaattccc caggatgttt acctgcaccc tggcctccgt gaggttgatt
      541 ttcagagcca gctcttcccg agtgaacaca tcgggatagt gggtttgagc aaaaacggct
      601 tccagggcct cgagctgatg gagggaagga gagc
//
LOCUS       KCOD01002106             410 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 234774pyr ultra-conserved element
            locus uce-887, sequence.
ACCESSION   KCOD01002106
VERSION     KCOD01002106.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 410)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 410)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..410
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="234774pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>410
                     /note="ultra-conserved element locus uce-887"
BASE COUNT          118 a           78 c           81 g          133 t
ORIGIN      
        1 ctgggcagaa caacttgtca aaaagaagga aattccacta cagattagct tatttttaag
       61 catgtcaggc tctacataca aacatgatat attgcttcct tgtaatgtct gtttaggccc
      121 agatgctcga ggcactgtca gggagtgctg taaattttgt ctgagtcagg gcaattctga
      181 ttgatctctg agtgtaaaat cgataagaag acactgtcat tttcttaaag gatgagctag
      241 aaaaggaaaa taaattaaga ctccactgaa tgtctatctc cagcgctcat taattcagtg
      301 tggtctgtac tttgttaatg ttatgtccac agctttaatc ttccaggtgc tcttcctgca
      361 gatagtcgac agcagccctt tattatgtta tgtatatttc atctacacgt
//
LOCUS       KCOD01002107             700 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 234881pyr ultra-conserved element
            locus uce-2088, sequence.
ACCESSION   KCOD01002107
VERSION     KCOD01002107.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 700)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 700)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..700
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="234881pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>700
                     /note="ultra-conserved element locus uce-2088"
BASE COUNT          214 a          140 c          151 g          195 t
ORIGIN      
        1 agggcacttg gcagcactgg gacatgagtg ggaacttcga ggtagatcca gcctccaacc
       61 ccaaagccca gcagacacct caggcactag ggaagctgaa ggaacccttt taatgtctgt
      121 ccctgtagtt gtaaagtctg tcactgcagt tcacgagaga caactaatca ataaccatgg
      181 aaccaaatag gcaaataaaa ataaaatcca ttaagatggc agaggtattt acttgttgta
      241 tttacaccat ggagagctgc actgtcagtc agtgcttccc cttcgcaaga tagaagcaat
      301 ttgtgcagac tgatcccagt tttctcatta atatgtaaat gaggcatgcc agttgttagg
      361 ttagaagaaa gctgtcatgt ttattgtgac agatttaatg gatgtgtttg gattgtgcat
      421 tcaatgtgtt ttcaagagca tgtcttatct ttgtttaggc agtaaatcaa acatgtaaac
      481 aacaattcat tagcatctgt cagaagctca aagctacatt gttatagttg aaaatctccc
      541 cagaggtgaa aaaaagtata tctgacttat tccagattag ttggaatatt ttctttctgt
      601 ttgcaaactt gtaagtaatg attgagctgc agcataggta cactcgggta gcactagggg
      661 tcagacagaa accactggcc agaccacctc tgccaccact
//
LOCUS       KCOD01002108             658 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 234992pyr ultra-conserved element
            locus uce-3114, sequence.
ACCESSION   KCOD01002108
VERSION     KCOD01002108.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 658)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 658)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..658
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="234992pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>658
                     /note="ultra-conserved element locus uce-3114"
BASE COUNT          164 a          136 c          160 g          198 t
ORIGIN      
        1 ttaccatgct gtggagccag ccatctgtca gcaaaacagg aaggcacggg ttccttctcc
       61 ctcctgggct tgtttcgcta ttttcgggag ctgtacttct cccgcgcgca gcgccaggct
      121 ggtgtggtct gagggaaagg ctcccaggcg agcgaggggc caaagcctgg agctgctgct
      181 ctgcccatct gctgtggctg gaggtgtatt cattattaat ggaggtagtg gctgttgctg
      241 ctcagatatg cagccctgcc tgggtaaatg agacattctt cagcaaattg cttcgttttt
      301 tgattgctga ttgtacgtgt gtcaccaagc tgactcaagg ttcatcgatg catgctcagt
      361 aaattagaaa gaacataact atggatcaac caagagaatg aattctgtgc ctacaatgac
      421 ccagggccat ttaattttct gcttaatttt gttgcagtca gtttgcattt tgggttatta
      481 tgcagtagga aattaacaat aaataacaaa tttggtcctc ctgtgcttgt aatgatattt
      541 ttataaatct ctgtaatgct gtttttcaaa ggatcaaggt ctgtgccagt ctgatactcc
      601 agcaagtatg cagggaggaa ataaagagaa aaatacgtta ttcttcccag ataatctt
//
LOCUS       KCOD01002109             605 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 235102pyr ultra-conserved element
            locus uce-7108, sequence.
ACCESSION   KCOD01002109
VERSION     KCOD01002109.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 605)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 605)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..605
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="235102pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>605
                     /note="ultra-conserved element locus uce-7108"
BASE COUNT          179 a          116 c           96 g          214 t
ORIGIN      
        1 tttttttatt gtcacatcca tggcattttt aaagtaaata tgagtacaag gtttatatta
       61 ttttaaatgt atattgtatt tgtcttccca acactgtggt ttttagtact gtgaataacg
      121 tagtatggag ccagcctatt aaacagcctg tttttgtaag gaaactgtta gtccacctac
      181 aatattctat tgcttactgt gttcttccaa tatgcttagc attccacaac ctaaatgatc
      241 atttgttgaa caaattcatg cttttattag tcaaaataca gagaaaacag agcccccctg
      301 tttcaagata tttgctaatg cacggttaat tatcacatat agcttactat aattcatttt
      361 acagggagac ctcctgcagg taacatacta gcagtttatg aagcaaaata acctcactat
      421 agattagaac tgtttcacta ctggtcagac agttgctgct tctaggcctt ctcacttcac
      481 attgctaatt tgaacaaggc tttattttta tatttgtcag cagcaagact gtagcatggt
      541 tgttaaacct ctcccaggcc taattagagt agcaatgcta gcattcataa tgaatctcgt
      601 gtcct
//
LOCUS       KCOD01002110             488 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 235211pyr ultra-conserved element
            locus uce-3051, sequence.
ACCESSION   KCOD01002110
VERSION     KCOD01002110.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 488)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 488)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..488
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="235211pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>488
                     /note="ultra-conserved element locus uce-3051"
BASE COUNT          155 a          104 c           86 g          143 t
ORIGIN      
        1 aagcccatct aagactgacc agacattaag gaactctttc tgttcctttc tgattagatt
       61 gggtcataaa gatgaaagct ccgtttcatg actttatcca cctatcctca gtatgttcct
      121 gagctagtta aaattaaact tagctatcaa aatgctaaac ttgatagctc atttatcttt
      181 ctgtctccca actctacatt acaatacagc agtgattgat cttgcgtctt caaggtacta
      241 tatagtataa aaactaagag aagattaatt aaaagccgtc gcatccagac aggtttttaa
      301 ataagtttta gatttagaca atatatcagc tgaagcaaaa agattccgag accataagcc
      361 tgtaacttca agtaagtttt gctttccttc gggacacaga aaaccccatt tcaccacaga
      421 ctaacatcaa actctggttt ggtcaggcag gcctgtggca ggaggcagga agctgtcaca
      481 ctcatggg
//
LOCUS       KCOD01002111             423 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 235317pyr ultra-conserved element
            locus uce-6253, sequence.
ACCESSION   KCOD01002111
VERSION     KCOD01002111.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 423)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 423)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..423
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="235317pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>423
                     /note="ultra-conserved element locus uce-6253"
BASE COUNT          115 a           65 c           86 g          157 t
ORIGIN      
        1 aaatgaacag ttttgcttct taggaattct ggggtacctt ctgtcatctt ctctggcata
       61 tagacaggct tcactattaa cagagttcct tgagtgtatc ctgctattca ggttgatgta
      121 ctgtattagg atttgttgta tattgtacga tacacacatt ttgatctcat atgtaaattt
      181 gcattaattg ctgactaaca gcagatattc tatttaatgg cttcttctgg ctgtgggatc
      241 atagatgttt aactgcatgg atgtatctct gcagaatcag aactagcaat tgtgtgattt
      301 ttacaccaat aaaacagcac aatattttaa ttttgttgat tcatctttat ctgggaattg
      361 aaactcattc aaataagggg gaggggttta ttacaggttt gcagggaatt ttgtggcatg
      421 tac
//
LOCUS       KCOD01002112             781 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 235423pyr ultra-conserved element
            locus uce-3918, sequence.
ACCESSION   KCOD01002112
VERSION     KCOD01002112.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 781)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 781)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..781
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="235423pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>781
                     /note="ultra-conserved element locus uce-3918"
BASE COUNT          230 a          179 c          146 g          226 t
ORIGIN      
        1 agaagttcac tcactgcgtt ggttttatcc cactcccgat taatgctgga cattttaaca
       61 attacattct ctgaggctgt ttacacatgc aggctttgta ttttttcaga ggtgctctag
      121 catagagctc gtcttgtttt ctgccaacat agatgctata aaatcatgct tgattcagtt
      181 tactcccctc ccctcccctc ccttcttccc ttttcctcag ccttatcctc ctccatgttc
      241 ttgggtgggc agattcatgg ggagacttgg tttttagcat agccaccacg aggcagtttg
      301 ctactctcct gaagcacatc tgggctttat atcaggcctt taattaatcc tcagtgaaag
      361 ccaagctatg acattttgac tgggcaggct ccagttttgg acaggtcttg atttattgcg
      421 actgagtctc aacctacttt gatttatttc agctttgggg aggagggcaa gaactgaaca
      481 gaaaaagcac tgttggatgc agaacatgtg atgcacgtaa aggacctcca gagtactgtg
      541 gaccaaatga caaacagctc agacaattta caataaaata aaataagtga tgaaaagaaa
      601 agaaatcact taaagcaaca acaactgcca ctatcaaaat gagcaacaac aaatattaaa
      661 agacttagga tcaaacaatt cggcagaacg aaggaagctc atgccttatc tctaagtaaa
      721 caataaatcc ctggtcactc attagtgtta atcatgcctc tcatctgcat tcagctacat
      781 a
//
LOCUS       KCOD01002113             700 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 235533pyr ultra-conserved element
            locus uce-883, sequence.
ACCESSION   KCOD01002113
VERSION     KCOD01002113.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 700)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 700)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..700
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="235533pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>700
                     /note="ultra-conserved element locus uce-883"
BASE COUNT          148 a          187 c          185 g          180 t
ORIGIN      
        1 gccgtgcaga agggcagcat cggcaacctg ctgggcttcc tggaggacag cctggccgcc
       61 acgcagttcc agcagagcca ggcggggctg atgcacatgc agagcccgcc cttcgaggcc
      121 accagcgtgg acatgatgcg ccgcgccgcc cgcgcgctgc tggccctggc caaggtggac
      181 gagaaccact cggagttcac cttgtacgag tcgcggctct tggacatctc cgtgtcgcct
      241 ttgatgaact ctttggtttc acaagttatt tgtgatgtac tgtttttaat tggccagtca
      301 tgacagctgt gggcccccgt gtgcgtgtgc gtgagtggag ttgcccttta tttatgcaaa
      361 accacctcag aatccactgt ctgccctgcg ctgtcctgct tctccctcgg ggtgcccttc
      421 aaacccttat taaaggagac aaagttctgt ctacatagaa gacttttttt attttaacca
      481 aagttactgt cgtttacagt gagtttgggg ttgccgtgtt atcccattga caggcaccac
      541 tttcataact ctctgaagga aaagtgactg ctgaacgctg tgtggatcgt tgtacattca
      601 caatcttgca ggaaccaaga agttaccagt tgtgaacaga ccttgtccaa gggaggcctg
      661 tgcagtagcg tgtagaactc catgtactgt acaccttaaa
//
LOCUS       KCOD01002114             802 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 235642pyr ultra-conserved element
            locus uce-2040, sequence.
ACCESSION   KCOD01002114
VERSION     KCOD01002114.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 802)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 802)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..802
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="235642pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>802
                     /note="ultra-conserved element locus uce-2040"
BASE COUNT          252 a          168 c          142 g          240 t
ORIGIN      
        1 ctgtattcac ttgttgcttg ctgtacacat ggaaggcaaa gcagcattta ccacgctgct
       61 aaagttctga attaacagct gacgtttttg acctggctcc cattagctcc cattaccacc
      121 tggtaacagc ctgccttcca catgctgtac ttcacagata tcagccatta tccccacccc
      181 ggatcagtcc ccaggcagta tgctaacagc ctcttctaca agccaattta caaggatctg
      241 gtcatgttta cattagcctt ctcccaatgc atgaaaagag aagagtgagc ttcagaatag
      301 aaatgagcaa atatgaataa ttcaattttc cttgtggcta ttaacacatt ttccttgaat
      361 aaagtgataa taggttatca tctgtgaaat ggaaattgca taacagagag tttctggtta
      421 caccagagga aattaatttc acagcacatc tgctgggacc tgacttgtga atgctaagta
      481 tgagaaaatg cagccgttca gcttcgctac ctttataatt agattagcat gcctgcaccc
      541 atgctggaat cctcagtcta gtcaaaagaa ttactgttcc tttcttcaga tacctaatat
      601 ttgtaataat gaaatgactg aggcaattag ggaaagttaa aaatgaatta tgggaccata
      661 ttatattaac cagatgccgc tttaaagtga ctgactttgt gttatctgtc tagttaaata
      721 cagtacttag ccctgctatc aataaatgta atgcatcaaa ttaacacaca caaaaactga
      781 ctttaagtaa tgttaagatt gt
//
LOCUS       KCOD01002115             399 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 235751pyr ultra-conserved element
            locus uce-7008, sequence.
ACCESSION   KCOD01002115
VERSION     KCOD01002115.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 399)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 399)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..399
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="235751pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>399
                     /note="ultra-conserved element locus uce-7008"
BASE COUNT          134 a           80 c           71 g          114 t
ORIGIN      
        1 catctgttta ccaatttcct cctggtaaca tcacctccac agaaataact aaatcacctt
       61 cacattcctc tcggtgaagc cattaagcct agaaacatgc tggtttgggc aatacagaaa
      121 tcaaagtggt agcacagcag agaagatctg tgttaaagaa caaaaatcca caggctgctt
      181 caaatatcaa caaggaaccc tgaaattttc tatcaatttc ttttcatggc cttgtgacat
      241 tttcaactaa aaactatatt gcttaacatc aaggcacttt gagagagctt cagttggaaa
      301 aggtaatttt tgagtgagac tcagcagaaa aaggtaattt ttcagagagg ttcactggaa
      361 aaaggtaatt tcagaaccaa ttgctgcatt cttttgctg
//
LOCUS       KCOD01002116             666 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 235861pyr ultra-conserved element
            locus uce-5886, sequence.
ACCESSION   KCOD01002116
VERSION     KCOD01002116.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 666)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 666)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..666
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="235861pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>666
                     /note="ultra-conserved element locus uce-5886"
BASE COUNT          200 a          154 c          183 g          129 t
ORIGIN      
        1 caccctcagg ctgagaccct cattcccttg cacaggaaga tagggaaaag cagggaacag
       61 gcagcccatt tatcccccgc gacaccagtc cccttgcaag tgtaatttat ggtgtaattt
      121 gggccgcatc caacttaata aagggccact gcaaattagt gaacaggttt aaatgaacag
      181 aagcaattag tgctcggagg agcccatcaa agaagttggg ccaatatcag agtgaaactg
      241 aaactgcaag ccaggagcag aggctggctg gcgcgaagcg gtgatgggaa ggtggcgttt
      301 aatgggaaag gaaaggaaac cctaaatcat aaagcgtgac aagggccatt gtgggccagc
      361 tgacaaatga aaaagaatgg cattattcct ttaaataaca gcagcagtta gagaggagac
      421 agctctccct ggcttgccct cacttccctg gcctgctcca ctcggccacg caggcggcaa
      481 agaagaatca gaggtcttta ttaattattg aataacgact ccctccgcag tgtgatagat
      541 aacgttcaat ctaggcaatg gattcaggcg atggaggcta atctgtaaca cagcagctcc
      601 acatggggat gggctctccc agtcccagag ggaaccaatg caggggggca ggaatagcgg
      661 gcagga
//
LOCUS       KCOD01002117             417 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 235968pyr ultra-conserved element
            locus uce-4026, sequence.
ACCESSION   KCOD01002117
VERSION     KCOD01002117.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 417)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 417)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..417
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="235968pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>417
                     /note="ultra-conserved element locus uce-4026"
BASE COUNT          166 a           63 c           61 g          127 t
ORIGIN      
        1 aagaaagcct tgcataaatc ctgacagaaa aagtggattt aaatcaaact aataggttgc
       61 aaaacatatg aaatatgctt tgtactgtgc cttggagaca catggccaaa tccatattca
      121 aaaacaaacc atagtgattt gaagaataaa tcacttgtca tcgtgatctt taaaaatgcc
      181 agaatttaat gcaaaaatat aatcctaaca tttattgcag caaaaataaa tgtcaacata
      241 ttagacttaa ctggctaagc cttgtggtag catttctaca aagtgaaagg aacatgacaa
      301 gttgtatttc acatttatta gaataagatt tggtcttctt tatcataagc agtagattta
      361 aacactttat tttaatttac ttcacaatat tgagaaaaac attgactcag ataagaa
//
LOCUS       KCOD01002118             777 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 236074pyr ultra-conserved element
            locus uce-7068, sequence.
ACCESSION   KCOD01002118
VERSION     KCOD01002118.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 777)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 777)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..777
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="236074pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>777
                     /note="ultra-conserved element locus uce-7068"
BASE COUNT          177 a          167 c          172 g          261 t
ORIGIN      
        1 tgggtttagc tgaaatggtg aaaataattt tcacctagat taaattgttc tttctctaaa
       61 atagcagtga gtggaaagta agaggtagtt tgaaacttca gacttggcag actaaaccca
      121 gcaattcaca gggtgaagaa acttcaccca caaaacatgt tccgagttgt agttactgat
      181 gactgatgtg tgcctttgtg ttctctgtct gtgggctggg tctgagggga gggagtcttt
      241 ccagagatgt gttgctgtga aatgtgtttg tattgatctt tatgtggaga agctattcac
      301 aaggtttaaa cctgtcctcc cctccttcag taagcgactc tcccagccag ctggaggcct
      361 tctggactct atcagtaata tctttgggta ggttagaaca ctttcacctc cttgttttgt
      421 atattggttt caatgtacac caaaatcttg gtgatgcagc aaattttcag ccttccttct
      481 agcttctgcc tttcttttct tttttgttct cctcaacttc ctgtttcttc catcttgccg
      541 tgtgctgacc tctgaccttt ccctccagtc tgtctgagtc tccccttttg ggacatcagt
      601 cttctgatac tgccaggtga aaacattatc cgctctccgg catgtgattg tattccactg
      661 aagtaacatg gaacccagct gcattgtgct gattagattc tgcagttgat aactctggtt
      721 agaaactgtc tacagtgaga gaggcagtga gcccctcttt gtggagagaa tatatgg
//
LOCUS       KCOD01002119             437 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 236180pyr ultra-conserved element
            locus uce-4200, sequence.
ACCESSION   KCOD01002119
VERSION     KCOD01002119.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 437)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 437)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..437
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="236180pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>437
                     /note="ultra-conserved element locus uce-4200"
BASE COUNT          158 a           96 c           61 g          122 t
ORIGIN      
        1 ttctaaccca ctttttctac aagctgacca tttaagtttg gaaaatgcaa ttcacatatt
       61 acttatttta acaacagaaa aatgcatcag actttagatc agcccaatat ccctcctcac
      121 tcaaatagtc caggacatct caacaaacac ttgaaatgct accaaacccc agccgccact
      181 tcacatgatt tatgatgtca ttaatgtcaa gctatcagtg gacaagagta aaagagacaa
      241 cagcaaagct gactaaaaac aaatagtttt gattaaactc aaggacattt ggtacagctt
      301 tcagcaaaaa ggcattaatc atttccaaag ctgacctttt tttttcatcc caaatgcaaa
      361 aatagtatgt gtagggattc ctgaagtcta ctgtctatgt agctgaatta aaagtaatta
      421 acggcaatac catcacc
//
LOCUS       KCOD01002120             827 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 236290pyr ultra-conserved element
            locus uce-7011, sequence.
ACCESSION   KCOD01002120
VERSION     KCOD01002120.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 827)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 827)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..827
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="236290pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>827
                     /note="ultra-conserved element locus uce-7011"
BASE COUNT          272 a          146 c          181 g          228 t
ORIGIN      
        1 tctcttttaa aggttacatt tgcatttaca aagaactttc aagcaattta actacaatga
       61 attttaacaa ggcgcttcct gttctcactg cttgcgtatt tttaaatttt atgagactct
      121 tctggcagag ttttgtagcc gttaagatga aagcctggat gcatgcatac ttgaaaagtg
      181 gaggaggagg aaaaagaaga ataaaaagaa gaaaggaaaa taatcaattt ggtatcaaat
      241 ttattccaaa gccgaaaagt gcattttttt ctgattgtga aagaagacat gcagggaggt
      301 caaaggtcaa gcaaagagga gacagtattg tgtaggaact gtcacgcatc accacctatt
      361 ttgacatgca cagggccgtt tgttgtctgt cgaacatgca aattaagtgc ctgctgtcat
      421 agctagccga tatctgaaag tggaaaatga gaccacctgt aaccagtgaa tggagtgatg
      481 gacaagcatt cagagctcgt catttccaac gccattcaca ccacctccga attgcatatg
      541 acatgtaaaa atcttttctt aatattcaca accgggaagt ttggggaatt atggaggctt
      601 caactgctgc atctaatggg ttctccaagc agacagctgt gactgtgagc tggcttgata
      661 attaggtgtc caggaagatt ttatgctatg aatcagttaa aagggagaaa agaaaaagaa
      721 aataatggca agcaaaactc gctggaatgg aaattatatt aacccttgca tgtcttcctt
      781 ggcacttggc ccaattcctg tgaagcaaga tttgcagaaa ccatata
//
LOCUS       KCOD01002121             414 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 236402pyr ultra-conserved element
            locus uce-4080, sequence.
ACCESSION   KCOD01002121
VERSION     KCOD01002121.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 414)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 414)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..414
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="236402pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>414
                     /note="ultra-conserved element locus uce-4080"
BASE COUNT          129 a           77 c          104 g          104 t
ORIGIN      
        1 gaagaagacg atgggagaga ggaggaaaag ctaagcgact gtcagatcag ctcaggatct
       61 ccattagaat gcagagtgct ccagagtaat tacaaaacag ctgtaatgga aaattggtag
      121 tcaaacccat tttccaccaa ctagaacggt gaatgggctc cattatgttc ctaattctca
      181 ttaacttaat ttgcatagga aacaatgaag gaatacctaa tgagttagac tcagctagca
      241 gcagatcgat acccctgtga acaggggttc gacccataat tacaggacat gtggcaaagc
      301 cggaatgttt ctcctcttac ataggggaga tggaaaggtt ggcctccctg ttgttattta
      361 ttcaaaggct ggaaatgtgg tgcctacagg ggcagaaatt tgttgctgtt tgga
//
LOCUS       KCOD01002122             835 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 236508pyr ultra-conserved element
            locus uce-6210, sequence.
ACCESSION   KCOD01002122
VERSION     KCOD01002122.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 835)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 835)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..835
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="236508pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>835
                     /note="ultra-conserved element locus uce-6210"
BASE COUNT          200 a          229 c          166 g          240 t
ORIGIN      
        1 caggcagctg agtaacagtt gctctaaaca tctggaatcg acactttagc gttagctgga
       61 attaaagcat cgtgtgacgg tcctgtcact tgaggtttgc aaacccagct ctagcagcag
      121 gatttttggg aactggcacg ttcttggacc cagactagtt tgtctggttt aagtgtgcaa
      181 cgtggttttt acaggactga atttacctgg caggtgagtg aagtcctccc gagtcaggaa
      241 gcttaccctt ttgctgttgt atttgttagc taatagatgg ttgtactgat ggcttgtttt
      301 tcattttttt tatgcttttt ggtccatcta ttaataaaaa tgaacccgtt acagagtcac
      361 catcatgtct cttctcacca ccctctgagt ctgcattagc cagccaacta gccctttcag
      421 cgtcatgtga ccagcgcgcc ccatgcagct tggctggtgt cgtttcacat gacccaggca
      481 tggccagtcg tcaggttgca ccgccctttg gttcccgagc atgctgtttt ctctcagcct
      541 tctctccaac cttaaccggc agcagccacc tcgaccgccc acacattccc ggccaatcag
      601 ctcagctgtt tatttaccaa atgtcttcac aacaactaca gcagcagcct tcggctaaca
      661 aaaaagcagg aaaaatccac aacaccccct tcgccaacca actaaataca acgcaacatc
      721 tggcaaaacc ttttcagcaa attcttcttg gcagtcagtc cggcagcctc acctcaccat
      781 ttctagcttg ttgaaaccaa agacttgtaa gtttttcctg cttatacagt ttact
//
LOCUS       KCOD01002123             418 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 236615pyr ultra-conserved element
            locus uce-5986, sequence.
ACCESSION   KCOD01002123
VERSION     KCOD01002123.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 418)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 418)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..418
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="236615pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>418
                     /note="ultra-conserved element locus uce-5986"
BASE COUNT          144 a           73 c           79 g          122 t
ORIGIN      
        1 tgctgaagat acaagcttta aaaatcattg gtatttagga aaatccaaag ctggggtgat
       61 gcatgctcag gtgctaattt atttacatca attaatttca ggcccctgat gtaaaccaat
      121 tagtattcaa cacttaatgg agtcattatc tgtcagatta gcttttagaa atgcttgtca
      181 ctgctacagg accaggcagc agaactttgc taataaaact agcagaatta atggagtgaa
      241 cagcatagat aatgacttaa tgtggaacat acagtataga aaagagactg aacaactgtc
      301 ttcaagaaat taagatatca ttgagccggc tactttattc caaaactgag ctcagatggg
      361 ctctttggaa acaccagagg tgtctcacta agccttttat ttcataataa atagcttc
//
LOCUS       KCOD01002124             632 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 236726pyr ultra-conserved element
            locus uce-74, sequence.
ACCESSION   KCOD01002124
VERSION     KCOD01002124.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 632)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 632)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="236726pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>632
                     /note="ultra-conserved element locus uce-74"
BASE COUNT          192 a          119 c          114 g          207 t
ORIGIN      
        1 accaaaggag cctcaggaat taattgcaac cttctaataa acacaatgat gtaatgacgt
       61 atttaacatt actggttttt gtttgattcc aaataaattg ccgactgctg tgatactaaa
      121 acaattacca ttttgaggat aattaatcta caattttttc acattagatc atatatctct
      181 tttgatggtc ttcagctgct gtgtatttat ttttcatttt tcctggtgct gtaccgcccc
      241 atcagtgctg acatttaaat gagtgagtat tcaacacaaa tgtgatcgtt tgtgtagcat
      301 ccaacgtggc accatactga gatgattgct tctgggagcc atccatgggt tcccgaatag
      361 gggggaaaag ccaggcaaaa ttttatcaat ttacattttt ctgtgattaa tttttatgca
      421 aataagggcc cgaccgtgct cccatctcac ctgaatcatg cggatcatca aagacaaatt
      481 gagcatcact tatttaaaaa ataggcttta aactactcta cagctgtgtt ggaaaatgct
      541 aagagcaggg catgaacttt tctaatgtaa caggaataga taagaaaatg cttctctttg
      601 catttttgtc cacactgtga taaacatgag tc
//
LOCUS       KCOD01002125             578 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 236834pyr ultra-conserved element
            locus uce-5812, sequence.
ACCESSION   KCOD01002125
VERSION     KCOD01002125.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 578)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 578)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..578
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="236834pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>578
                     /note="ultra-conserved element locus uce-5812"
BASE COUNT          191 a           96 c          111 g          180 t
ORIGIN      
        1 ataagtccat tatttccatt tcctaagcag ggtactgtag atcttactct gcctgggagc
       61 tgggtaaaaa cagccagtta atgtactaaa ggtcagaatt tcagaagtgc tctacaaatg
      121 cattgaaacc aactactaat aatttttttt aaggggtctg gtcatgtcca agggaatgcc
      181 agctacattt ttcttaatgt atgagcacaa gttacacaca acaacctaac aacacaatac
      241 tgcctcttta atgctaatct attccttgca atctactaga tacatgtaga atcattggtg
      301 tgtatcaaga gagcaaaatc agattctgaa aatatctgaa aggatgcact agagtgtaca
      361 taataatgta ttttaatctg ccaggcctta aaattaatca tgaattccca cagagatttt
      421 aataattttg agatgatgtt ttcatatagt gatactcttg gacagagttc ttgaaatgct
      481 acatggaaat gggtggggga gggaaaaatg ggggccattt ttcaattacc aggttagcta
      541 agatacagat acaagaacta ctgtttaatt ggttgttt
//
LOCUS       KCOD01002126             594 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 236946pyr ultra-conserved element
            locus uce-2765, sequence.
ACCESSION   KCOD01002126
VERSION     KCOD01002126.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 594)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 594)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..594
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="236946pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>594
                     /note="ultra-conserved element locus uce-2765"
BASE COUNT          159 a          124 c          143 g          168 t
ORIGIN      
        1 ttgttttccc tgtccttcag tcacagtgag gagagtctaa atatttcagt gactttggat
       61 tcccattcct tgctacacaa caacaacaaa agctatttat agcaataaca gttagcagcg
      121 atacagcagc ctcagacagc tataggcagc atctcacaaa tgttaactgc ttttgcactg
      181 aaagagcact gagaaataaa gatcaaagca aaaccaaaag aaagattttt ttattgctat
      241 gttttacttt gctggcagac cagagcaaag gttttctgaa catttaaaag atgaaaaagg
      301 tgaagaatcc cagaagcgat ttatcttgaa gcgagataac tctagtattg ataaagaaga
      361 caatcaggtt ggttctcggt tcgagagttg ctgaaatttt tgaaggtggg ctgactgatg
      421 ttattgttgt tcttttgttg ttgctctcct gccctgccct cctgcccctc tggcatacat
      481 accaccgtgg gtggcatcaa gccccgcttc agccgtggca ggtttgcatg ggtggtttgc
      541 ttggcgcagg acttgctgca tgcccgggag ggggaaggtg gctccgggct gcgt
//
LOCUS       KCOD01002127             594 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 237053pyr ultra-conserved element
            locus uce-4761, sequence.
ACCESSION   KCOD01002127
VERSION     KCOD01002127.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 594)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 594)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..594
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="237053pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>594
                     /note="ultra-conserved element locus uce-4761"
BASE COUNT          178 a          105 c          102 g          209 t
ORIGIN      
        1 ttgatgccta aatgacaagc aatatattct tgctgtcagg atgaagcagg gcgatacatt
       61 tttcatatgc aaactccaga atataattgt gtgtttgtaa aagtaatttt atcaccaaaa
      121 attaaatgac agtttcatca ctttataaaa attctgctta tacaagcata tttgattatg
      181 caaaagttaa tctgtcctgc aaaaacctgt gcttcagtca atgagtatca gcctggcaag
      241 cagttactca ctggcccagc tgttctgcat agaaattgga ttgtaagcag tgtaataata
      301 aggtgttttt tgaattactt gtcttctgtt ttgtccttgc agatgacagt ttgatttaca
      361 tggatcctca ttactgccaa tcttttgtag atgtcagcat aaaggatttc cctcttgagg
      421 tactatggat atagacctgg cactgttttc ttcccatatg aatcaaacac taattattta
      481 gagatgttct agctagctgc agctttatgg ttttacagtt acatgttatt tatcaatgtc
      541 ctgcccttct ttataggcct ataatcaaca aaaatgacca gaggttaaat ttca
//
LOCUS       KCOD01002128             697 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 237162pyr ultra-conserved element
            locus uce-3772, sequence.
ACCESSION   KCOD01002128
VERSION     KCOD01002128.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 697)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 697)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..697
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="237162pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>697
                     /note="ultra-conserved element locus uce-3772"
BASE COUNT          209 a          149 c          123 g          216 t
ORIGIN      
        1 cattgtactc agcatattac aatgtaacat gtgcttccaa tgactcagat tagcaacatg
       61 atagaacaac tttgaagtat atgtatgtgc catcctcagt tttattcagg tgtaattctt
      121 tatgcaaaac ccaacaaacc ctaaccctta agatttttat ttactaatgc cgtttattcc
      181 tgaactgctt gaaaataact caacaaagct gacgttccaa acaaagacca cacttcctgt
      241 tcttgcaggg aatctggaac accatcaatg ttttgttcag cttgcataag tcacaactga
      301 ttggccacag tccctgtggg catgccattt catccagact ggacggttca ttagtcataa
      361 ttactataac tgtacagcag agactgcagt tttatctcat catacatctt tgataaagct
      421 gcttctattt ctgcttcatc agcatgtgaa gttacattat tggagctttc attttccaat
      481 ctgtgattaa catcggttgt tctgcttata aaacgcgcac cggccacgac gtgaccactg
      541 tttgaacttt gtgaagaata gactctgaag aaaatttaac caaggaagta ccaacaacgc
      601 agtctaagag cataaagctg ttggtttcta atgtgtttgg tacaaaggtt agaggcagga
      661 aatttctgac aactgctggg tcaaccagca tttttca
//
LOCUS       KCOD01002129             632 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 237271pyr ultra-conserved element
            locus uce-1319, sequence.
ACCESSION   KCOD01002129
VERSION     KCOD01002129.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 632)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 632)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="237271pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>632
                     /note="ultra-conserved element locus uce-1319"
BASE COUNT          180 a          101 c          152 g          199 t
ORIGIN      
        1 ttgtgcatac tgataatcca gatgttggta tcaatatgct tattcatatt ttcagtaata
       61 aaacttgcct tccactttgt gggacagcga cagaagatca actggcgatg gaacagcatg
      121 tggtaactat tttctgctat gacaattatg ttgaggcata atgttccttg aattgtgaca
      181 tgcagaaatt gcatctcctt tttgtctgta attgtgattg agggaaggtt ttgtatttgt
      241 tttgtgatag atggctcttt cctttgcagc caaacaggga aaaagttaat ggcgaagtgt
      301 cgaatgctta tccaggagaa tcaagagctt ggaaggcagc tgtcccaagg acgtattgca
      361 cagcttgagg cagaattggc tttacagaag aaatatagtg aggaacttaa aagcagtcag
      421 gatggtaagg gaaagttgcc ttgcacttct ttttgtgatg atccatcttt gccataatat
      481 tgagtaaaat attaactggt agtcttagtt aaaatcctta actttggggg aactggtggg
      541 attcacagct ccagtaatgt aagtcttgct ttagactcca tgcatgaatt ggcaaggtga
      601 aggctgttaa cgtaaagcct aggcatgcac tg
//
LOCUS       KCOD01002130             623 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 237382pyr ultra-conserved element
            locus uce-7589, sequence.
ACCESSION   KCOD01002130
VERSION     KCOD01002130.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 623)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 623)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="237382pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>623
                     /note="ultra-conserved element locus uce-7589"
BASE COUNT          185 a          118 c          142 g          178 t
ORIGIN      
        1 tcttgcaaaa ttaaggaatg attattcctg tcaaatctgg agatccagca gcctcagatc
       61 actgtaacag aatagctgaa aaacccagaa gaatctgccc tttctgtttc accacgcagc
      121 ctgtctgttt ctttgctctg gtgtagtatt ccactagagg accatgggca aagcttgagt
      181 aatgctatat ttaagtatgc tttaaaaagg gcaagaagtt tctttagttg gtgcgttcta
      241 tcagaggcaa gataatagaa tttctaaacc cattgatttt atggcattaa gaatctgctt
      301 gataagtcag tctctgtata ctggtgatca ctatctccag ctgtataagc agaactgtcc
      361 ccatttcatt ttcaataaga aattgaggga gacttagatg tgctggaaaa tatggggaaa
      421 ataagtagca taaaatctct cttctgttga ggtatggcat agctacttgt tattaaatac
      481 tggaggagtc acagagaaac agagttggat gatgtgtgag gaaaggcttc ttaatctgtg
      541 cccccagttg acgcggcaca cacaggagca ctgctagtgg ggtattccag caccaatggg
      601 cagccccagg caagagaact ttg
//
LOCUS       KCOD01002131             586 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 237493pyr ultra-conserved element
            locus uce-2066, sequence.
ACCESSION   KCOD01002131
VERSION     KCOD01002131.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 586)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 586)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..586
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="237493pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>586
                     /note="ultra-conserved element locus uce-2066"
BASE COUNT          187 a          106 c           94 g          199 t
ORIGIN      
        1 tttcttacaa gaatattttt ggaagcaaat tttccctggt attttatatg atactaagat
       61 gatttatttt gctaaattct gctcatgtgt atgctcactt actgctatac attctagata
      121 aacagatatt aatttcataa ttaaaagtaa tcttgtgtaa ataccctgca ggcctcaatg
      181 aatcaaacac atactgtgtg tcaggcctcc cactgtcttc aagtggaatg tactggctgg
      241 ataattagat agtacatatt ttttaacctt atttgcatgc atattatatc ttttgcacac
      301 tgacaagcag cagtaacaac aaaagtcaga ttaccacagg gaattcccac aaagaagtct
      361 tcatttctta taatttgcag cctaaattaa aataatttga tctttgacaa ggatgaaatg
      421 tcaagcagaa gggggtcctc tacaagccac ggcctgtggc ttctgaaatc tgcctaattt
      481 atgtcagtca cttcttaata catatttaag tattacacga gaaagatgat aaatatgcaa
      541 tctgacacct ttggtatttc cctgctgtta atttataaag gtctgg
//
LOCUS       KCOD01002132             762 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 237604pyr ultra-conserved element
            locus uce-2166, sequence.
ACCESSION   KCOD01002132
VERSION     KCOD01002132.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 762)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 762)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..762
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="237604pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>762
                     /note="ultra-conserved element locus uce-2166"
BASE COUNT          229 a          157 c          151 g          225 t
ORIGIN      
        1 tggatccttt atgaaagtta aaattggttt gtcattttct tttcgcttct cacaccttat
       61 ctagtttcta cattcttccc acttcagtag tcaaagtgat tgaaagccga aaactgagca
      121 gatctgtccc tgcagcaact ttcctcgcgt ttctcattta ccattttatc aaacgggttc
      181 tttgtctttg cagtcccctg atgttgcctc tgttacacgg tgatattctt caggtcatgg
      241 gggttaaaag ggggctaaaa aggagatcat attggacttg ctctacacag acatgtagca
      301 ttagacccaa cgcccaatag aggaaagata tactactcct atttgatgag cagcaggcca
      361 ataaattcat taatcatcat tttatgcctc atcaaacact acccaagttc ctccatggga
      421 gttatacaaa ttagccactg aaaaggcagt aattttagtt tagctaggta agtgcttttt
      481 gattgccttc ctgaacaatg cttcccttga caagctaata aatcagccct ttctgaatca
      541 gaagtgcagc aagtgcgaac aataactcca catagtttct ccgctgattt cagctggaag
      601 gcctaagagg atgatctggg atcaaagtct cttactttat tgcagagcaa aagctttctt
      661 tatgaagaag agctacagag aaatgaggga agggggaaat caattaatga gagaaaaagt
      721 cttgaaacaa aaaggaggcc taagtctcca attgcagaga tg
//
LOCUS       KCOD01002133             264 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 237713pyr ultra-conserved element
            locus uce-2193, sequence.
ACCESSION   KCOD01002133
VERSION     KCOD01002133.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 264)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 264)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..264
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="237713pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>264
                     /note="ultra-conserved element locus uce-2193"
BASE COUNT           70 a           50 c           61 g           83 t
ORIGIN      
        1 gtaaaacata cacacaatgt tggggaaata agccaattat gtgtgcttca caggaggtac
       61 tgacctttgt gtataattag ttcttttatt taaagcaaag attttgaata gaataactaa
      121 ttagctgtca taaatggcaa attgaagatt ttggccggat tccttgggga gtgtgggagg
      181 acgtccctcc tcccagcccg tactgtacgc tctggctccc ctcattagtt gtttttactt
      241 ctccgcagtg gtaatgagga gtgc
//
LOCUS       KCOD01002134             624 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 237817pyr ultra-conserved element
            locus uce-6695, sequence.
ACCESSION   KCOD01002134
VERSION     KCOD01002134.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 624)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 624)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="237817pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>624
                     /note="ultra-conserved element locus uce-6695"
BASE COUNT          185 a           95 c          124 g          220 t
ORIGIN      
        1 gaaaaataaa ctctacttga agtctttgat tttcttctga tgcatttcct ttcttaacag
       61 taggaagacc tattaaaatt atattaacct gaagaataac aatagctgaa acagatttga
      121 tatagcttag aatattttaa atgtaaataa gctgtttttc tttattagtt ggtattgcat
      181 tttcactgct gcttggtttt gtttgtagag ccagaatgaa gactggggag gtttgtctga
      241 ggatatctta tgattaagag caatctaagg cattagccct tttgacccca tctaaatgat
      301 tggtaactac caagtttacc attttggtgg catggattaa atgggtgcta tgcaaagact
      361 gctgcacgtg taattgcaag ggtaaaccgg gtgatgggcc tgcaacactt gcatgatgtt
      421 ttattttcct tttatgtact aaccgcatca acttgaaatg tctgacttct actggctttc
      481 tttggtgttg ataattaagt gggataatgc aagttagaga aatggatacc aaagctaata
      541 actaaacaga tgtttggctt tgtttactta caatcagccc atgtaaacat gtatttattg
      601 gaaaatgagc tgtttacatc tgct
//
LOCUS       KCOD01002135             576 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 237926pyr ultra-conserved element
            locus uce-2941, sequence.
ACCESSION   KCOD01002135
VERSION     KCOD01002135.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 576)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 576)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..576
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="237926pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>576
                     /note="ultra-conserved element locus uce-2941"
BASE COUNT          172 a          100 c          124 g          180 t
ORIGIN      
        1 tctcggggac agctttcact gtaaataaaa aaaaagagag cagaaattaa tgtttgtggt
       61 cagtccccag caagcacact ctcgaatgca aagcaacagc atttttacct gaaatctgtg
      121 acagatagct gaggcactaa tgtttttctc tgttaataag ctggatgtgg aacagagctc
      181 ctttagagta tgtacggtaa agtggaaatg catgctttgg tgactgctat aaagcaggcc
      241 aaagatatgt caagtccaat taatgtcaat aaggaacatc tgtatttagg cacccaagtt
      301 acttaatgca aacatttcat aattatatgc tatagcacac atggagcatt atgagatgtg
      361 gtgtcccagt gtgaataata ttcacatttt tcagatcagt cagcagtctt ggtctggctt
      421 tggctcagct tgcagtctcc ctgtaagagc atttctttat aatattgaat taggtacaat
      481 ccacattttt tctcttatct gtgaaatctt gtggttgtgg cttgactgtt tttataaaac
      541 gaaagatcca agtgcatgta aagctggggg tttggg
//
LOCUS       KCOD01002136             573 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 238030pyr ultra-conserved element
            locus uce-4865, sequence.
ACCESSION   KCOD01002136
VERSION     KCOD01002136.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 573)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 573)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..573
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="238030pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>573
                     /note="ultra-conserved element locus uce-4865"
BASE COUNT          173 a          109 c          106 g          185 t
ORIGIN      
        1 aattttccca gtgagaaatt ttttgttggc tggattttat tgctagtgaa atatacgttg
       61 ttgtgtcatg tcataaacag aaaactgttt taaaatcctc agcactcctg acacttccaa
      121 caagtacttc catattggtt ttggtcttat ctgtttctaa cagacagtct catgccttgg
      181 aaatctgacc tgaaagaaaa attcagcccc aagtatctgc tgtcaattgt gcagaaaata
      241 ggagatgaca gcaaagtcac ttctgcatgc caaattacat ctccttccaa catcttctaa
      301 tgtcattatt agcactcaaa tacactgtgt caaaatgtgt ctgtacaggg agatggacca
      361 ggcaacatca aatctatctc tgagtcaata tgacaagctg gttttgattc aggcttctga
      421 acaggagaga ctcctgctcc atcattttgt ttacaaatac agatattata ataggtggaa
      481 ctgtattatg cagtttcatt ggatttctgg gatcaatagt gtaataggag ttaaaatcat
      541 cagtgtgagc cttttccaaa tagtcaatgg tgc
//
LOCUS       KCOD01002137             679 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 238140pyr ultra-conserved element
            locus uce-5505, sequence.
ACCESSION   KCOD01002137
VERSION     KCOD01002137.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 679)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 679)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..679
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="238140pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>679
                     /note="ultra-conserved element locus uce-5505"
BASE COUNT          209 a          120 c          130 g          220 t
ORIGIN      
        1 tttttccttt gctgctgaac tttttaaaag aggtctctaa ttgaagagag atggaagcca
       61 ggcctgccaa aggatggaaa tccataatat ggatgccagt gaacttatta tgaaccataa
      121 tgtccccaat gacaaaggaa tcaaagagag aaccaccgta cctagcagta cagtacaaca
      181 cgatgaactg actgaatgca gtattagatt tcataggagc agtctcacga ctaagcgacg
      241 atgcatcggc tgcttcttat cattgcattt tccatctaga tcagttacag ccatttgatt
      301 ccttaattgt tttatcaagt cttccagata tttcttaggt tagctacgat gtaacttttt
      361 cagggaatag tttaagcttt attcattcat gcaatactaa agagaaagaa atactgcatt
      421 tttgtgctgg cttgaacaat gatgaacaat aatgaaggac aaatgaatcc tgaaggaaga
      481 tttttttaaa tgtttcgttt cttcttacta atggagattt ttttgtacca gctttaccag
      541 ttttcagcca tttattaatg tgggaattta tcttactaaa gcaatagtcg aagggaaggt
      601 gcatattatc acggatgcaa tttatgttgt gtgccagtct ggtccaaaac atccagtttc
      661 ttaacatgag ctccagttt
//
LOCUS       KCOD01002138             436 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 238244pyr ultra-conserved element
            locus uce-5240, sequence.
ACCESSION   KCOD01002138
VERSION     KCOD01002138.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 436)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 436)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..436
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="238244pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>436
                     /note="ultra-conserved element locus uce-5240"
BASE COUNT          161 a           62 c           68 g          145 t
ORIGIN      
        1 ttacgatact acagtaaata tttaactatt tctagattgt gaacttacat tttaaacatc
       61 tgttagttac ttatatgttg aaatatatgc aaaaatattt agccaaattg aagtcttagg
      121 cccatgacaa tcatctcaac acagtgggta gttctgaaaa ttaatgagaa tgataatact
      181 gtaaagactg ttccagagtt tgcccaaatt cattatctaa gactcttgtt aagaacatct
      241 caaagaattt taaccaggaa aatatattaa tggttcaaaa gcatttttca aaatggtgat
      301 ttataaaagt ataatggaat tatatatgca agagctatag ttagaaaaac aaataacaca
      361 ggagcagcac attatgaagg aacattttct aacagctctt ggctttgatt ttgtccatag
      421 gtgtcaaggt ttcctt
//
LOCUS       KCOD01002139             765 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 238355pyr ultra-conserved element
            locus uce-4117, sequence.
ACCESSION   KCOD01002139
VERSION     KCOD01002139.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 765)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 765)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..765
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="238355pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>765
                     /note="ultra-conserved element locus uce-4117"
BASE COUNT          231 a          135 c          144 g          255 t
ORIGIN      
        1 aaattctgta cttagtatgt aggtttttat aaacataaaa tctgaaaagt ctttgtgctt
       61 aaactttttt tcctgttaaa cagaattagt tgcttacttc caatactgcc actgtaactg
      121 atattacaac agatcacaat tttcacagac acatcaacat taaaacattt acctatgaga
      181 aaataagtca cttctcatta gttcacagtg cgaaaaagtg gtgtatactc tgtcttgaga
      241 aaggctttca gttattcatc aagccagaaa agtcctgata ccagatgcag tgctagactt
      301 agagaatgga aagcaacaca tcacatgttg ggaggagaaa aaataaattt ctcgtttctt
      361 catggatatc gtctaagtga ccttcgtctt ctgttgtaga aatgcctgag cccatgttgc
      421 cgtgaaaaat tcatcatgta attttgtttg cgagtgctat tgaaatcaaa gggtggaaga
      481 aggaaagagt gtcttttata catagtgtaa atgcttttgg cagtgagcta gtgggagtga
      541 ttcttctttg tccttgcatg actttttaag tctgtgcaaa ctggtgtgaa gcataaggca
      601 attgagaatc tgtcccactt ggctttcatt tacaattcat ttaagagctt tcagctaatg
      661 aaaactggtg ctgcctaggg ccacattcac taaaactgta tgcacacttc atagcggcgt
      721 tttgtactcc agttattctt ttgatcatta actactttat cttga
//
LOCUS       KCOD01002140             580 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 238464pyr ultra-conserved element
            locus uce-3815, sequence.
ACCESSION   KCOD01002140
VERSION     KCOD01002140.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 580)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 580)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..580
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="238464pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>580
                     /note="ultra-conserved element locus uce-3815"
BASE COUNT          184 a          100 c          155 g          141 t
ORIGIN      
        1 aaatatgcag tgtgaagaac catttcccag aaatcacagt gaagggagag gaaaggtcta
       61 gtctgaagtc taaagcttcg gggggaagga aaaacaagaa atgataagtg gggggaagag
      121 gagggaaaac tgcctcttag ggcctgggat acagcacagc tctgaaactg ctgagaggga
      181 tgtagccatc tctgcaaatc aagatgagct ggctggccaa tgaagcatgc ccggcatttt
      241 atttctcata ttgtttggag atagggattc agctgagtgc attcagcaaa taaagatcaa
      301 ataacctgct gtgaataatg ttttaaacct gggttcctat caggatctag ttataagccc
      361 atatactctg ttggataaaa aataagttac acatggctgg aggcagtatt actttctaag
      421 gaagatgaaa tctgttttga aatagaaaat gtttagtgat tccccttcct cggaggacta
      481 aaccacataa agctgcctga cggagacggt ggaggagggt ccaccgatat ttcacccact
      541 gtgggtccag agctaaggat ttatgctaaa agagggggtg
//
LOCUS       KCOD01002141             311 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 238573pyr ultra-conserved element
            locus uce-6286, sequence.
ACCESSION   KCOD01002141
VERSION     KCOD01002141.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 311)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 311)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..311
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="238573pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>311
                     /note="ultra-conserved element locus uce-6286"
BASE COUNT          108 a           64 c           44 g           95 t
ORIGIN      
        1 ttttagttac aacttggctc tctctgcagg ctgaggatca gtaaaagttc agcaactgat
       61 gctttgggca cacataagaa atacctacaa tcatttagca ttgcaaagag aattctgatg
      121 ctaatgaggg ctaaaaattg gattcacaag tttacagagt ccaccaaact gaacaaaatt
      181 gtcagcataa catttaaatt acttttttga taagcttggc tatttacaaa tcatcagaca
      241 attacatctt ccaaaaacta tttaacatca attcactctg ccttttcaac actgcacttg
      301 actaattcca a
//
LOCUS       KCOD01002142             621 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 238676pyr ultra-conserved element
            locus uce-6790, sequence.
ACCESSION   KCOD01002142
VERSION     KCOD01002142.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 621)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 621)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..621
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="238676pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>621
                     /note="ultra-conserved element locus uce-6790"
BASE COUNT          177 a          116 c          116 g          212 t
ORIGIN      
        1 tttcatggct gcaatatccc tttttagtac attcatggag atttcttcaa tctttactac
       61 taggtcatgt caaaatttca gtgtctgata tggaaataag acaaactgaa ttcccccttg
      121 gatattatac agcagatatg taaataaacg taaggagaag tcaccgatgt cacacttttt
      181 ctctatcaac attttatatg agtgattgcc tcctttcctt acaggtagat cttgccagtt
      241 tgtacatcaa gactggtgcc aagaacatgc ccacagtgct tttgctgaca gatgcccaag
      301 ttccagatga acgctttctt gtgctgatta atgacttgtt ggcatcaggt gattaaagca
      361 acaaatttct tgaaagatct tttccagtga caaatgatct gtgttttcat tgaactttaa
      421 agagattatt tctttttcag gtatttgtag ggggagattt tagagcaacc aagtcaagcc
      481 atccaacttg agattgctaa ggcttaaaag gagaatatct ctttgactta atgttatttg
      541 ttttggtgtg tcactaattt caagcaatgt ccctgtgact tagcatgcag caatgatgcc
      601 tcacccatgt tagataatct g
//
LOCUS       KCOD01002143             382 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 238782pyr ultra-conserved element
            locus uce-1466, sequence.
ACCESSION   KCOD01002143
VERSION     KCOD01002143.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 382)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 382)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..382
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="238782pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>382
                     /note="ultra-conserved element locus uce-1466"
BASE COUNT          116 a           59 c           75 g          132 t
ORIGIN      
        1 agtttgggtt actcttaaat taataccttt ttcgtttaag tttccaaaca gcaaagagta
       61 aactgtgttc tgcatctaat tattggtaac tacaagttgg aaagttatat gaaatgacag
      121 caagggaccc actttctaga tttgcctttg ctcatgttat ctaccaaaat tgttaattca
      181 attatgaaat gtggggaaaa gtgcagttta cttatataga tgtaaaatag gtgcatgttc
      241 agaaggcagt tgcagaaatc cattctactc attctctgtg tcaggatctt tgctttgttt
      301 cattgcagta aactgtgatc ctaaagtcca tcaatatgac cgaaagaagt tttggagttg
      361 agaaggattc cttaagtgct gt
//
LOCUS       KCOD01002144             390 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 238888pyr ultra-conserved element
            locus uce-7516, sequence.
ACCESSION   KCOD01002144
VERSION     KCOD01002144.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 390)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 390)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..390
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="238888pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>390
                     /note="ultra-conserved element locus uce-7516"
BASE COUNT          115 a           68 c           74 g          133 t
ORIGIN      
        1 atttggtcat cataatcaag ggctattaca gcaatagatc ttatctttag aatggcagtc
       61 cccttgcacc ttcagttcag atttttgttt atgcttggct gcaattgtgg ctgtttctga
      121 tagttttagg tcagccatga cagactatgg gtgacactaa ataaacaagc tgggagtctg
      181 tgactaggaa ggaatgatac tggttctcag agtttgattt tctctggtta atcaacaatt
      241 tattcagaat aagtcactgt gaaaagtaac tgctagacta tgcatatacc ccctcacaac
      301 tcacataggc aaccagaaag aacaaatcat gctcaatgtt gttttttata gtaggctaca
      361 gaatttattt gtttatttaa tttatgttca
//
LOCUS       KCOD01002145             688 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 238997pyr ultra-conserved element
            locus uce-3689, sequence.
ACCESSION   KCOD01002145
VERSION     KCOD01002145.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 688)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="238997pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>688
                     /note="ultra-conserved element locus uce-3689"
BASE COUNT          199 a          129 c          134 g          226 t
ORIGIN      
        1 ttctttgtag actttaattt aataactcct agtatcttca gtcgctttca catacagtgt
       61 gcttactgaa ctaatgcctt ctatttcctt ctgaatagaa accactcctg cccagacctt
      121 gtgcagctga gtgcagtaga caatttcaaa gactgctctt tctatttaac aatcagtgca
      181 ttaggctaaa atattcacag agatgcacta gcaattgaaa gggtgtgcgg tgtagtgaca
      241 aggtccttct gttacctgga ctgtagaatg atgaatgagc attagtggaa tattcttttg
      301 gcctttaggt ttaccttgat cttctcacag aatgcaaatt gacattatac ccacatttct
      361 atagtattta ttactgtggt cgtgatgtga gggctttttt caatatgaat agtgtaaaag
      421 gggaaacata ttactgcaaa gaggcattat tgtgctggga atgtataaac agctgagaag
      481 aatagagcga catgctcata atggaaactg aaagctcttc attttgtcct gattgtctac
      541 ccttcctttt taaacaacct ccctttttcc tagctatcaa tacaaagttc tttttggtaa
      601 aatgaagtgc attcatgctg cctgaaagaa gcttttaaag ttgatctgtg cccacacaaa
      661 agggaggcag tgtttgagca catcaagt
//
LOCUS       KCOD01002146             603 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 239104pyr ultra-conserved element
            locus uce-4855, sequence.
ACCESSION   KCOD01002146
VERSION     KCOD01002146.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 603)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 603)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="239104pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>603
                     /note="ultra-conserved element locus uce-4855"
BASE COUNT          194 a           99 c          127 g          183 t
ORIGIN      
        1 aacgtgcatt catagatgca ttttttaacc tgattcttta ccctctccct ctgtcacctc
       61 ttgaaaagtt tttcagactg gaactgtact tgaatttagt ctaattggaa ggaaatgtga
      121 gacccaaatc attggcatgg agacactcgc atacaatcac agtatgcaaa acagcagaag
      181 tctgaattca taattggacg ttccaaaatg taattatgaa agatgaaatg ctcctttcaa
      241 tgagaaggct gtaaatagaa taattaattt tgtgtttgct tgaacaattc tgtattatgg
      301 accttacact ggaactgaaa ttaattaagt gcaccaggat ttatggagga ggtgaagaga
      361 gagggaaaaa aaagaattaa tctgaagtaa aagatagatg actttgtgag tgtaatgatg
      421 cgttagtctg gggtattctt taacaaattt agcaggcatg ttctgggtac aaacagcact
      481 cactgacaga attatctcaa ctaatgcagc tgctggactc tgagcaaatt gagattgcag
      541 atgagtactt tagatttaga gctattaacc ctctgtgtgc tggagatgcg tttccattcc
      601 ctg
//
LOCUS       KCOD01002147             324 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 239212pyr ultra-conserved element
            locus uce-1621, sequence.
ACCESSION   KCOD01002147
VERSION     KCOD01002147.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 324)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 324)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..324
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="239212pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>324
                     /note="ultra-conserved element locus uce-1621"
BASE COUNT          103 a           59 c           83 g           79 t
ORIGIN      
        1 gtcattaagc cagtgcctcg gagatgatga tgtagtccct atgtgggccg cagaaagcac
       61 ttcgagccgt gctggagtcg tgctgggtgg ctctgatagc agagctaatg ggagcgaatg
      121 ggatgcaacg aactgttcta atgacaccag ccagggaaga gacaacagta agaataaata
      181 aatgttaact attttcctct tccagacatt tgcatctatt gccattaagt tcatttaaat
      241 aagagagaga gcgagagaga aggggaaact tactactact cttaataacc agtgtctaaa
      301 aataaattag gatgctggga tgca
//
LOCUS       KCOD01002148             345 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 239316pyr ultra-conserved element
            locus uce-7461, sequence.
ACCESSION   KCOD01002148
VERSION     KCOD01002148.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 345)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 345)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..345
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="239316pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>345
                     /note="ultra-conserved element locus uce-7461"
BASE COUNT           60 a           92 c           84 g          109 t
ORIGIN      
        1 ccaaggtgag ggccccgcag gatgcggcag cccccgggag gaaacccggg aaccgagatt
       61 gccccgctaa gatcagaaag gctggcgagc acagtgccct attgtggagc tgtcacactt
      121 ccctttactt tattgctttt gtccaacacc ccattgttcc acttcctttt gtcccctatt
      181 cacagccctg gcttttcatt acccagccgg ccttgttgtt ttcatttctt ttgtttgaag
      241 ttcctgagag gaaggtttta ttttcagccg tttgattaat tcgcagcttg agctttgttt
      301 gttatgtaat tgctggcttt gcacccccag cgtgctgggt ttggg
//
LOCUS       KCOD01002149             572 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 239425pyr ultra-conserved element
            locus uce-5111, sequence.
ACCESSION   KCOD01002149
VERSION     KCOD01002149.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 572)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 572)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..572
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="239425pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>572
                     /note="ultra-conserved element locus uce-5111"
BASE COUNT          125 a          147 c          202 g           98 t
ORIGIN      
        1 gaaagggagg tgacaacaag cctggccctg aagaaaggag aaaacaaatg actggagatg
       61 ggagatgcat ggaaaggact cggtttggag gagcaaagga ggaacaatct gcaggcaagc
      121 agcccgggag ccatccggga ggcagggaac cagcatccag gaatgggctt ggagacggag
      181 ccggcaggga cctgcccgag ctccgctcac tgctgttggg gactgcgggg tcctcgcact
      241 cactgggttg ttttctggat ttcgaggagc ccttggatga ctttttgggc ttctttatcc
      301 gctggtattt cagagcttcg agcctctcag gtgcagcagc gtccccgggc ggagatggac
      361 attttctagg aaggaaaatg cgccgtcagc ggctcccagc cacgctctct ggatgtcccc
      421 ggtggggggg ccgatcccag ccagctctgc cgtggaaaag gaagaggtga gaaacccagg
      481 gccgagggag cagggccagc caggcgtgcc agagcgcggg atggagaaag tgaggcgtcc
      541 ccgctgtccc cctccttcag gtttccgagc gg
//
LOCUS       KCOD01002150             558 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 239538pyr ultra-conserved element
            locus uce-6756, sequence.
ACCESSION   KCOD01002150
VERSION     KCOD01002150.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 558)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 558)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="239538pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>558
                     /note="ultra-conserved element locus uce-6756"
BASE COUNT          202 a           93 c           96 g          167 t
ORIGIN      
        1 gataattaaa agtgtctaac tcaataaaaa tctaaacttt catggataaa atagaagtga
       61 tcatccatag tcttcaaata caatctgttt gcaattacca aaatgaaata atatatatta
      121 gatttttatg gctttttttt gcgcttccca ggaagttctt ttttctctaa gttactaaaa
      181 gcctgaggtc tattagtaac tccccccact ttcaagctaa ttaaagtagt agaagcttgg
      241 aggtttaatt ccccagagcc gaagctcagt gtgagaaagg taatttgtct gtccagaaca
      301 aagattaggg agcagccagc aagcatattt aataaatgag catcaaatat cttctactat
      361 ggacacagac aacaccaatt atgtaactac agttgttgag tgatatgtaa actagaagat
      421 ttttgagatc ttctctaaga gacgtaatgt aactcataca gaagctgaaa acaagcattt
      481 gttacaaaca ttgccaaggt ggaaaattta gtaagtggta atactgttgc aaacaagaaa
      541 tactgcagga atactacc
//
LOCUS       KCOD01002151             755 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 239647pyr ultra-conserved element
            locus uce-7701, sequence.
ACCESSION   KCOD01002151
VERSION     KCOD01002151.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 755)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 755)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..755
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="239647pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>755
                     /note="ultra-conserved element locus uce-7701"
BASE COUNT          262 a          139 c          146 g          208 t
ORIGIN      
        1 aggcacaaga tcacaatgag taaatgaagc ctctagaaga gtggtgaggt gttcaccacc
       61 tgggtcaggc aactggaggg ggatcagtgt cagatataag taaatgagaa ggtagaagag
      121 gagaactgtg agccataagc caagaaacct acaatgcact tcttacaaag agctgtaaaa
      181 ttcacattta ttttgtaagt atgagataga tgggttattt ctacatacag aggtgcccaa
      241 ctaaaatcaa gataagtgat attaatgtcc tatggtcagt attattgaac ctcgaaagca
      301 ataaagtatg agtcgataaa tattacattt gcaacatagt taacattctt ctactgtctc
      361 tggcacttat tacacattgt aaccgcaagt ctacaataca ttattcatat ttggggtgtc
      421 actgagtgat ggattgctgt aagagaggct gtcctttaaa taaatcaaca aataaaaatg
      481 caaatgttaa cattttcagc cacaactttt tccatcttga atggggaatg aaaatttcac
      541 attatatcga cagccagcag agagaacaat taacaaccta cactctgaat aagagagatt
      601 aatttgccaa tgtctggttt tatcacttgc atatggaact acatttgcac tgctggcttt
      661 ctcggggagt aggcaaaact agcgtctcct acaacattca gactcaccac ccactccaaa
      721 cacactttgt tccaaagtta aatctagaat gaaag
//
LOCUS       KCOD01002152             723 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 239760pyr ultra-conserved element
            locus uce-2287, sequence.
ACCESSION   KCOD01002152
VERSION     KCOD01002152.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 723)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 723)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..723
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="239760pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>723
                     /note="ultra-conserved element locus uce-2287"
BASE COUNT          187 a          179 c          136 g          221 t
ORIGIN      
        1 gttttcataa agaaaccctc atctattctc aaaaccccaa aatctccttt tatagcacaa
       61 tcctcttagc acttatctct ctcttcctca ttaatccagt ttcaccccga cacatgcaga
      121 gacggggagg gagatatata caccttctgt tcttcttgac ctttctgatt tggttcagca
      181 tttatactag cccacctgtc tggccaatct cccctgcaat gtgcccttaa aaacatagtt
      241 tgataaggca tggtgacaaa ccttgcagag agcaagcatg cgagcaaaag ggagagaaag
      301 cgctgaggga aatcttctaa ccaggatctg ctgctgcaca gctaatcagg caggtattca
      361 gttgttcact cctgcagact tgcttagcat agaaataggc tgtctgccca ggaagatgag
      421 gtaatgtcta ggtttaatgc caatctctgt aactggcagg acacatcggg taaatatttc
      481 tgctgcagga gaccacatta atttgatttt gctaccaatt ttcattattg ttattattgc
      541 tattgctatg aatatgcatg agtttacctg ctaacgctga gggctccagg tgaggcagcc
      601 ttcatgctgc agcactcaca ctcctccctg tcctttcatc ttctttatga aggaccaggc
      661 atttgtctgc tcaattatct cctttagtcc atttatgcag tattagatcc ccttttccac
      721 tca
//
LOCUS       KCOD01002153             503 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 239864pyr ultra-conserved element
            locus uce-1770, sequence.
ACCESSION   KCOD01002153
VERSION     KCOD01002153.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 503)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 503)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..503
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="239864pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>503
                     /note="ultra-conserved element locus uce-1770"
BASE COUNT          159 a          104 c           68 g          172 t
ORIGIN      
        1 ttggttttga aacattaaga aaggtaagat cttacctaaa gaagtttaac tgaagcttag
       61 aactattttg ctctacaccc tcagccttcg ttgccatcct tataaacaat ctaccgtaaa
      121 gctttgcaga gatacagcac agctttttaa gactggctga acttttagtg acgttttcaa
      181 gagttctctt gtactagacc tgcgtccctg gaagagtacc ttgcttattt cctttccttg
      241 ccattgaaga agcagcatct aaaaaatcta aaaaggtctt gcagagatac cccttaagtt
      301 acctatatat tttaaacctg gtaatttaca gacaacatac tttttctcac cagcatttta
      361 cacgtacaac aatagctttg tattatttgt gggaccttat actacccact ccttgcctta
      421 ttttacagta ttaaaaaatc taaaattaca caatatttcc tttagaatta ttttattaaa
      481 atcataaatg tacaacagct tct
//
LOCUS       KCOD01002154             585 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 239975pyr ultra-conserved element
            locus uce-4434, sequence.
ACCESSION   KCOD01002154
VERSION     KCOD01002154.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 585)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 585)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..585
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="239975pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>585
                     /note="ultra-conserved element locus uce-4434"
BASE COUNT          196 a           95 c          107 g          187 t
ORIGIN      
        1 aaattgatct gaatgaaaac agtacaggag cttttcaggg tcttctttct aaatttattc
       61 aagtattaaa caaacagaaa ctacagcatg catcagatac tttcctttac tgtacaacaa
      121 aactgtttgt atttgcagca tttccagcaa catcaggcag acttgtcgat gttatccagt
      181 tttgcacagt cactagagtg tcgcatcatg aattattaaa tcagtgcttc gtggtaatac
      241 ataatttctt atcaattatt catgctaatg tgcgtgtagt ttacttaatt gtgttattga
      301 cgatcaaaag taatttcctg aaaatcctca aggacagaaa atttaatcag cgtaactact
      361 tttcagatgc aatgctgtta agtattctta atttgctcaa caattcactt atttatgtac
      421 ctttctggag gaaatacgag tttaatcaaa caattagatt gaagagttag tgtacagaag
      481 ggctgaagtt caactgaatg caaggtaatt acattgaaac aaagttgagc ctgcctcttt
      541 ggactggaaa ggagggagat gggaatatca ctaagaaaac agtga
//
LOCUS       KCOD01002155             680 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 240085pyr ultra-conserved element
            locus uce-1625, sequence.
ACCESSION   KCOD01002155
VERSION     KCOD01002155.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 680)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 680)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..680
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="240085pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>680
                     /note="ultra-conserved element locus uce-1625"
BASE COUNT          187 a          154 c          148 g          191 t
ORIGIN      
        1 tcacttccgc aggagtgagc tgctgacttt gcaagccgtt cgctttatga atatgaccct
       61 caaagggaag aaaccctctc acaagcccag aactatgtta tcatcgttat taaggagctt
      121 aaaaaggagc tgggaagagg agacaccagt ggaattgcag cctgattgtg attgatgtgt
      181 tcctattagc tcctcactgt tatctctctg gatggcaaga acagccagtg gcttgtaaca
      241 caacagatta cctgagtttt cagccctaga cggatgttta aataaaatat agtccctttt
      301 agcgagaagc tcattttctc tctgaggctc ccagactatt tcatgtcagc tgtgattcgc
      361 tgtgactctc ctcagtaaac atgtcttatc attaataatt ctttacaagc acaatttcat
      421 ggaggctttt tgtatgcacg cgtgggggga ggagggggcg tgcatgcgca aatgttggtc
      481 tcagcctcat ctcgatacag tttgggaacc caaggtgctt ctcttcagaa tttcacctgc
      541 cttgccaaaa atgattgatt acccttagca gactgggtgt ccagctatac ccaacaaatg
      601 actttggccc ctaacaacag gccttggcca gatagaaatc aatatttcac cattaaaatc
      661 tatcaaagaa gagttaaggc
//
LOCUS       KCOD01002156             305 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 240193pyr ultra-conserved element
            locus uce-1733, sequence.
ACCESSION   KCOD01002156
VERSION     KCOD01002156.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 305)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 305)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="240193pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>305
                     /note="ultra-conserved element locus uce-1733"
BASE COUNT          111 a           60 c           45 g           89 t
ORIGIN      
        1 aaataatata taaatatata catactgcaa atgtaataca gataacaaat tcatttaagc
       61 ccatttatgc acattagtga cacaccatgt ggcagaaaga ctaggactac aagaagaccc
      121 cgtggcgatt tattttatat taaatcccta atggcctctt ctcatctttg caaaaatatg
      181 cacaaaagtc cagactatga agccattgaa atgaatggtt atttatttgc taaacgagaa
      241 ccctatgttt aatgttcctt agacataagg tagtctgcaa aagtcgcatt cctacagctc
      301 catac
//
LOCUS       KCOD01002157             595 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 240297pyr ultra-conserved element
            locus uce-833, sequence.
ACCESSION   KCOD01002157
VERSION     KCOD01002157.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 595)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 595)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..595
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="240297pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>595
                     /note="ultra-conserved element locus uce-833"
BASE COUNT          201 a           91 c          123 g          180 t
ORIGIN      
        1 tttccattag ctttagtgaa tttataccca ttatagaaag gttgtagcta aataaatatt
       61 attttagttt aattggatta aaaattagaa atgcaaattc tggtgcacca tgtctctaag
      121 tccttgtctc cctttttatg gtaatacctt tctaatggtt taagcctatg aagaaaaaac
      181 actgaagatt ttaactagca gctttgcagg ggggcagaag ggagcaaaga agatttagtg
      241 gtgaaaagag caaataaata ggtgctccaa gattaaaaag agggtagaag tgcatgctga
      301 gctgttgaaa gacctctctg tgtttaaaga aaaatattgt ttggttcttt caccagtgca
      361 tgatcaaaat aagaggtaca aattagttca tggctgctga agctacaaaa catcatgcag
      421 agagctgtct ttgggaacgt tttaatgagg agaagaggtc atcagactgt gacattgctt
      481 ttcagaattc ttcaagaaca acacagactt cctgttccaa atgtggtaaa gaataaaaca
      541 accttagtag taatcgtaca acttttgaac cgtgttcctt ggaaatactg taccg
//
LOCUS       KCOD01002158             633 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 240400pyr ultra-conserved element
            locus uce-1267, sequence.
ACCESSION   KCOD01002158
VERSION     KCOD01002158.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 633)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 633)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="240400pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>633
                     /note="ultra-conserved element locus uce-1267"
BASE COUNT          207 a          123 c           99 g          204 t
ORIGIN      
        1 ggtggttaca gaccgacaca tccaatggac tttagctgct gtgataacct agtactgtac
       61 cattgtatct acatatttta aatgtgtaat ttatcagttg aaacataccc ttcaatacat
      121 gtgccataaa agaaaagagt gagggcaatt atgtaatagt atagtgtttg tctgacatgc
      181 cttaaatccc catattgtta ttcctcactg aataacaaat acaaaatccc tgttagcaat
      241 gttttccgtt ttaccagttt tatattagct gcctccttaa aaattgctaa tctagatact
      301 acattagtag gatgtcagtc aaactgcaat ccacagtgaa gccttcttca tataccaatt
      361 taaatcattc atggtccttt ctttggcatt attcaaaaga tcataataat tttcttgtgc
      421 ccacagcaca aaaaaatcaa ttatttcccc acaaagactt gaaagtactt agcgagtgct
      481 gtaagaaaag ctgagggtta tatcaaattg aaattgcact cattacacac aacacaatta
      541 gttgccacta gtctggccgg tgctttaatt ctgaatggca tatctttatt attacagaaa
      601 caagcatgca aatggcattg ttcaggattt gca
//
LOCUS       KCOD01002159             658 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 240507pyr ultra-conserved element
            locus uce-1054, sequence.
ACCESSION   KCOD01002159
VERSION     KCOD01002159.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 658)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 658)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..658
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="240507pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>658
                     /note="ultra-conserved element locus uce-1054"
BASE COUNT          190 a          132 c          138 g          198 t
ORIGIN      
        1 ttttttggct tttgccacat tcatttggag gtggaattca ttttgttctg aggaaagcta
       61 tgttgagatc agtaacttac ctgaacctct gtcttcaatc agctgaagca atttggggtt
      121 gatggcttga ttagcctccc gaagcacaga gatgaggtca tttacttgct taatattgtt
      181 aggagtaaag aatgtgtatg ctgtgcctgt tttggtactg cgggcagttc gtccaattcg
      241 gtggatatag tcctctgagg agttagggta gtcataattg atgacaaatt tcacatcttc
      301 cacatctgta aagtgttgca gtgtggcaaa aagcgaggta caaagttttg cacaccacaa
      361 cagccaaatc gaagataaac attagataag agtattttaa aaggaataat ggctgcaaag
      421 aacagtgtta gaatcatcca tttctgcagt attgtggaaa agttacgcat tctcatcacc
      481 caccctgtga tccaaaacct taccatgtgt gcatttgctt gtcattccca actcaagagt
      541 cccctttaca aatcatcaag tgacatcttt gcagtagggc cactaaagct cacagcagcc
      601 tcttcatgtg ctcatttgag gaccttagag taaaaacata caaggtcctt cacataca
//
LOCUS       KCOD01002160             650 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 240617pyr ultra-conserved element
            locus uce-5416, sequence.
ACCESSION   KCOD01002160
VERSION     KCOD01002160.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 650)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 650)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="240617pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>650
                     /note="ultra-conserved element locus uce-5416"
BASE COUNT          203 a          110 c          128 g          209 t
ORIGIN      
        1 agaattcatg ctgcaagaga aactactaca gtatatcaac attttattca ctctttaaaa
       61 catgaatatt taaacagaag acatttttcc ccatgcagaa gcctaaatag aagctcttat
      121 ctgaaatagt aaaagctgtt attttttttt tcaagaggtt ttagactgta tagagatagt
      181 tacatacaca ggcatctcaa atgagagggc accatacata catgtaattg gttgcctttt
      241 ctttttcctc ggcagtctgt acaaaacgtg aaaatgtgcc tgcttctgac tagccattaa
      301 aaggcagtgg ttgcaccata ctgtgatttg gggagctgaa gaaaatagcc agaactgact
      361 gatatctgat aaacagtaac aggagtcagt ttattgcacc aatcgttaaa taatggtgct
      421 gattataagg ctgctaactg cagatgctgt aattgtctgt cataaatctt agtcatttgt
      481 gacaggagca caatgaaaga gagcatctgc ttgagggcaa atgacttctg ataaatatca
      541 gctctgctaa aatgtacttg gatgtgtctc aatattttgg agagccattc atgttgcttc
      601 cacaaatgtg aagttattat tggtttgtat tgattttgcc accttggttt
//
LOCUS       KCOD01002161             664 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 240729pyr ultra-conserved element
            locus uce-3854, sequence.
ACCESSION   KCOD01002161
VERSION     KCOD01002161.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 664)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="240729pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>664
                     /note="ultra-conserved element locus uce-3854"
BASE COUNT          231 a           99 c          123 g          211 t
ORIGIN      
        1 tcagctgtat tccaggcaag gaagatagta ttgaattagc attggagctg aacttcagca
       61 tagattgtta taggaataaa atatgaagta aaatatgtga cagaattaaa tccatcagtt
      121 ctaataaaag aaacagaaga aagcaaagaa atattggacc cttaaatccc attaaccagg
      181 ccagagagag aatgcgttaa aaggaagctg cactgtatct tttttcattg tttgatgaaa
      241 taatcttttt caccctttaa gtagtgtgtt taaaactcct agtatttctg aaacaaagag
      301 aatatacagc caccgagttt ttataccttc ctttctgagt attgtccttc agtgcaatac
      361 agagccattt ctttgttctc acaagctagc agttaaattg tatgtaaatg tatgcaaatt
      421 agatgctgtc taataaagag agtcattaga tggaagaaat atttagttta gggggaaaaa
      481 agagaagaaa gcaggtgtat tttgcaatag aaaaatgtaa gattgcaaaa gcccctcaaa
      541 ctttgggtga aggcttttta taaagccatt aaaatatttt gccctactct ttttctgtgt
      601 gtatgtacat gcacttctgt actggctttg ctatacatac agacatgtaa ttattgtatt
      661 cata
//
LOCUS       KCOD01002162             770 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 240840pyr ultra-conserved element
            locus uce-6844, sequence.
ACCESSION   KCOD01002162
VERSION     KCOD01002162.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 770)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 770)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..770
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="240840pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>770
                     /note="ultra-conserved element locus uce-6844"
BASE COUNT          265 a          115 c          169 g          221 t
ORIGIN      
        1 aaaaaatccc ctttcttgga gttccatcat tttggaattg acaaacaagt taaaaaggct
       61 gccaaaagaa agcaggagtt ggaggaagtt aattcacatt gatgtgtgca tgccactgat
      121 agcaagttat gcctatgaca ttctgacatt gcctctcaaa aaagagaaag agtggagtgg
      181 agtgaaagac taagaggatg ttcatttaat tggaaagcct actgagatct gagacagctg
      241 aggcaaagga tgcacccttt ttctgcacaa tggcattggc tgaaggttgt atataaggtg
      301 gccttattaa agtgacaagg caatttaatt cttttgtgca caatgattct acttcattga
      361 tttacaatgg gaaggatata attttgctag tgttggcaaa aagctcaaat gtcaggcttt
      421 tcaaattgcc atacttgcct tgttcaggat gaataatgaa taagtcacct tttgtctaca
      481 gttaaatatt cttgaataaa tacaaagaac ataaaagaca taaatgattg cctgatttat
      541 atttaaaata aagatcaaca ttgtgataaa tggttgaaaa tgcttagcgt gaagtaatat
      601 gactatgctg ataattacat tatcaattaa ggggcagccc aggtgtggag tgttatagaa
      661 tggatgccag agagaaaccc ccagtgtgga acatgccaaa cttgtctatc tggaaaatag
      721 ggagtgaaga gacccttagc tatgcagagg atcacatgtt taaaattgga
//
LOCUS       KCOD01002163             343 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 240943pyr ultra-conserved element
            locus uce-6213, sequence.
ACCESSION   KCOD01002163
VERSION     KCOD01002163.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 343)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 343)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..343
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="240943pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>343
                     /note="ultra-conserved element locus uce-6213"
BASE COUNT           51 a           99 c           70 g          123 t
ORIGIN      
        1 ctctctcact cccccctctc cccttttctt tttttcctct ctcccttttc tgctcgcttt
       61 tcttgaactc attcagacct gagcgctcct aagaaatgcc gagcgcgctt tggccttgat
      121 caacagaata actggtgcgg cccctgcagg tgtgtatagt tttcccagac tcgctatggc
      181 tgatttgcag ctggtttatt tggtactttc ccctcctgcc ttgttgcttt gtagctctgt
      241 gttgtgatct agaagacaca agggagtggg acactgccat cagttatcgt ctctccgaaa
      301 gggttttgct tttttttgcc ttcctctttg ctgctgctag cca
//
LOCUS       KCOD01002164             628 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 241046pyr ultra-conserved element
            locus uce-2504, sequence.
ACCESSION   KCOD01002164
VERSION     KCOD01002164.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 628)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 628)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..628
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="241046pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>628
                     /note="ultra-conserved element locus uce-2504"
BASE COUNT          235 a          116 c           98 g          179 t
ORIGIN      
        1 gaggacagac tattactttt tctgcaagat gcctcctccc atacattaac tggaaaactt
       61 atgcagcatt ttaaaaacat acaacagtgt taagaagaaa aaataatcac aatctagact
      121 gcagctgccc ctttgactta tcaatttcag taagcacaat ttcaatcaag tctagataaa
      181 atatactaat cctaaataga ccaagtttgt cacctaccac ttcctataag ctgcttacta
      241 tcctggagag agagaagaaa tgctaaatta aatgccaaac agtagcagac agcgcttgtt
      301 tggctgatta acttgtagac aagcattaca aataaatctg agcatggtct gcagcaaatt
      361 aaattccagt gcttttaaga acaaagaatt cctttggaaa gaggattagc aactttacac
      421 ccaggaatgc cagtttaatt taattgttcc acaatccaat atttaatatg caaatatcat
      481 tttgatatat aagagcaaat ttgaaaaagt gaggaaacaa tcaagacgac tgtctctctt
      541 ctgaactgta attatacaaa ataaagctgg ccgaattact gggattgcat tctattaaca
      601 tgaatcagaa caagtctaat taaaggtt
//
LOCUS       KCOD01002165             606 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 241155pyr ultra-conserved element
            locus uce-4077, sequence.
ACCESSION   KCOD01002165
VERSION     KCOD01002165.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 606)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 606)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..606
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="241155pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>606
                     /note="ultra-conserved element locus uce-4077"
BASE COUNT          160 a          150 c          146 g          150 t
ORIGIN      
        1 ctcagctcct ccaccgcagg tccacaggcc tccccgggtc accggctgcc cccacaggca
       61 ggggaataag gcggtttctc cctggctgag gtggctcctc cgcttcccaa aagggtgtag
      121 cgagaaacaa gttaattttg ctcacaaaag cttcggtggc tcattacaga aatggaaaaa
      181 atattgctaa aaatgttttg caggggttgc cacagaaact tgtagagcat ataatccaaa
      241 ataggatgtc tagacaaact cctactgtct gaccttttat gtatttccta atccagccaa
      301 tcttgccaag caaattggtg actaagcagc aattcccttt acatggtgtc gtaaaggcct
      361 gacaaggccc aggtcacggt tataaatttc agtctggcta cttcagcaac tctcggcttc
      421 ctttaccagc acggctcccg tgtggtttct gggctatgat gtgtgctctg gatcatcgtg
      481 aagtaatttt ggggctgtaa aatccaaaag ccacagctcc gctgcgaaac agagagcact
      541 ttcatccggc aggaccccag agtttacata aaattgtaaa atagggaggc tggagagagt
      601 ctgggg
//
LOCUS       KCOD01002166             672 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 241261pyr ultra-conserved element
            locus uce-190, sequence.
ACCESSION   KCOD01002166
VERSION     KCOD01002166.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 672)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 672)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..672
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="241261pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>672
                     /note="ultra-conserved element locus uce-190"
BASE COUNT          212 a          141 c          128 g          191 t
ORIGIN      
        1 acacatactg tcctcaactt ctcgatcctt cctatgtgca gaaatacaac aaagggatct
       61 tgcatcttac taaaaggact gcaaaacagc ataccacctg cgaggggcaa gttctagaat
      121 ttctaggatt ttgtcccttg aacctgtgga agtcagtaca tttttgccac ttagaaccct
      181 ctgtgttatt tgtaactgtc agtggaaggg aaatctgtaa ttgttaagag ggaaagagcc
      241 tgtgcaaatt cttcccggtg caaagtgaac agtcaatcac ttttataagg acaggaacaa
      301 ccgaaactat ccattcgtat actttccttt agtcaacaat attaccttta gtaatctggg
      361 gaatgtgcat ccataaatta cagaaagtgt tattgcattg ctgaataaac agcaacattt
      421 ccatcagcag cagtggcagc accacaaagg tataacaaac agactcaatc attttcttgt
      481 caagctttgc aatgactgca gagtttactg ctggagataa tgttgctttc ctcagcattg
      541 tgtgccaaac tgcaaactgc ttattaaaac aaaacctctt tttctgagca gcatgagttg
      601 gataatcact tactgcactc aagaaaaaac aggtttgatg cccagaggtg gttagcaatc
      661 aagcatatgc at
//
LOCUS       KCOD01002167             408 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 241367pyr ultra-conserved element
            locus uce-7003, sequence.
ACCESSION   KCOD01002167
VERSION     KCOD01002167.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 408)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 408)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..408
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="241367pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>408
                     /note="ultra-conserved element locus uce-7003"
BASE COUNT          112 a          103 c           90 g          103 t
ORIGIN      
        1 attcaattac tccacaatga tggagcacag tgtcacaggt cactcctgat taaacatccc
       61 atccttctcg cagacattta gctcagaacc catttgtgtg cgactgccat ctgaagtggc
      121 tggctgatta cctgcaggat aatccgatcg agacgagcgg cgctcgctgc agcaatcccc
      181 gtcgccttgc caacaaacgc atcagccaga tcaagagcaa gaagttccgc tgctcaggta
      241 attcatttat ccagcctcta ctgcactctc aattcagaag caggtccaga gagcctgcta
      301 atcgaatctg cgggacagtg tttgctgtaa tggatattag ggagcatctt tggaaattaa
      361 atttgggaaa ttcggttagt tcaacagaaa gccaattacc ttatggat
//
LOCUS       KCOD01002168             342 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 241471pyr ultra-conserved element
            locus uce-2076, sequence.
ACCESSION   KCOD01002168
VERSION     KCOD01002168.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 342)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 342)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..342
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="241471pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>342
                     /note="ultra-conserved element locus uce-2076"
BASE COUNT          116 a           52 c           62 g          112 t
ORIGIN      
        1 agccttagaa gagtttttag gagactgcag tggctgctgc ttctgcaact cttcatttgt
       61 cctttacaag gttctgtgat ttaagaatgt gtgttaaatc ttctgcaaca atcaattcaa
      121 atatacaagt ttggctattc aaattacttt tccaaaagta ctttaaaatg cattaagtta
      181 ttaattgcct gctggcactt taatcaaacg ggaaaattga catagccaga ggcatgtatt
      241 tttgtggaaa ggaaatttat ttaagaagaa acagcggctc ttactgctta atttaaactg
      301 agaaaactgt ggaaaatcaa ctgctatgga aaattaataa aa
//
LOCUS       KCOD01002169             516 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 241575pyr ultra-conserved element
            locus uce-243, sequence.
ACCESSION   KCOD01002169
VERSION     KCOD01002169.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 516)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 516)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="241575pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>516
                     /note="ultra-conserved element locus uce-243"
BASE COUNT          157 a           93 c          108 g          158 t
ORIGIN      
        1 tcctcagcag cttttgtcag gagcagctag ggatcatcca tctgtcatta aagtgttaat
       61 tcgattcatt aacatagaaa atattcaaca tttcccactt tggaggagat gggctgtgcc
      121 gtccttttaa tagaactctg ctggaaatca aacacaattt ttattcaggg gaatgattac
      181 tgtgtcttgt ttaattcttg cctaacaaat gtcagcacta atgtattaca gattattcag
      241 tcaatttgat ggttccaggt gaaagaaagg aacacaaatc tcttctttta gtgtaaaaag
      301 ggtcagctgg atgacttcca ctgcaggagc cgagatgagg cttgacatga atcaatcaag
      361 caggctcaat tttacagtta tagtgcctaa tgcctaaaca tgagcgtatg ggtgaaaatt
      421 agcacccgat tatgagcata catgatcttc ccttggaaga caataatatt ggcattaagc
      481 ttctcaagag ggaagatgct gctggttttt aatatg
//
LOCUS       KCOD01002170             626 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 241681pyr ultra-conserved element
            locus uce-3466, sequence.
ACCESSION   KCOD01002170
VERSION     KCOD01002170.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 626)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 626)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..626
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="241681pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>626
                     /note="ultra-conserved element locus uce-3466"
BASE COUNT          188 a          107 c          113 g          218 t
ORIGIN      
        1 agaaggtttc agttttaatg gttgcaagat caaatatttg acaaaagcca agaccggagg
       61 tatatattct agagtgaaag agggaggaga ataatgagtt tgaaaacaca gatttgttag
      121 tggaaaagaa tgctacaaag gtctctgtgt gaatctttgg ttcctggagt ttctgccaat
      181 tccttttatt actatttcaa gtaaccaggt acatatggca tgtttgtgag taaagcagtc
      241 aatgaagtta gttacacctc tgcatttatt accctacccc tgagtattat taacttttac
      301 attccccata aaatataatt tatcacttaa ataatttgct ttgtgtcagg gttcagtgtg
      361 ctccagtgct ttcctgctca ttaaatgaga tatttttact taatgagccc agaatgtcct
      421 ttgcatttaa cattagagtt gatttcaaac actccatttt tctaacatat ttgtatgtaa
      481 tttcagaatg tggacttcat tccatgctct gaagaaaact acaaagaata atgacccatg
      541 acttctggag acctattatc tacctgcact ttgcgttctt tcatctagtt tgaaagtctg
      601 agttaatatt tgagcctgat gctgca
//
LOCUS       KCOD01002171             648 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 241792pyr ultra-conserved element
            locus uce-7236, sequence.
ACCESSION   KCOD01002171
VERSION     KCOD01002171.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 648)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="241792pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>648
                     /note="ultra-conserved element locus uce-7236"
BASE COUNT          223 a          147 c          110 g          168 t
ORIGIN      
        1 aaccgcaaga tgaaaagaca gtaataccac tgaaactaga ctgactgagg tgacccgaga
       61 taataaattt caaatgcaag aagaaaaggc ccctgtactg ataaagccaa cactgtcaca
      121 cttttctatc tctcgataca cacagcaatg cagcaggcac ttcagataca tcagagctct
      181 ccaagattct tttccagtac atttacctct gccaagccct ccccttcccc caacacacaa
      241 aaatccatta ctaaagggtc taatctcagc tatcagcaca gagtgccttt tatggagcca
      301 ttaaaccatt tctcttgttt acagtgcctg aagaaagatg tgaattatgt ctgtgacaaa
      361 acaggcgata acatttctaa actgctatca aaatgcaaac tgaaatacac ttaaggacag
      421 ggaccctaat tcgtgttttt gccattttcc tcgtgactta acagcactca cctgatgatt
      481 caaacaaatt atttatgctg taagtacaac aggtaggcaa aaaaaaaatc tgctttcaaa
      541 cagtttattg aacggttcgt caaagagcgt aaaatgctag ttacatctta ggtgatagaa
      601 aggtgctctt atcagaaaaa atccgaggtt cacatgagtc ctgaaatg
//
LOCUS       KCOD01002172             454 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 241903pyr ultra-conserved element
            locus uce-589, sequence.
ACCESSION   KCOD01002172
VERSION     KCOD01002172.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 454)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 454)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="241903pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>454
                     /note="ultra-conserved element locus uce-589"
BASE COUNT          135 a           89 c           80 g          150 t
ORIGIN      
        1 gtgctgcaca agattgattg ctctgatctg tagttcaatt gtaaattaga atacacatcc
       61 ccctggggac acacggcccc tatttgtgat taagaaaaaa gccccataat agactaatag
      121 ctaaagttct ctctctttta ctttcaggca attagcttga tgaaatggcc tctttttgtg
      181 taccctggaa gtgtaaaccg atatcataat gaagtatatg atgtttattc tattattttc
      241 accttgccat gtatgcagga atgcataaat aatggctgct ttgtctagta catttactga
      301 ttcagaagta aactctgtct taaagatgca gcgatcccat agccttctgt taagctggac
      361 actgtgacta gtccctataa aaactcatat tctgcccaaa gaagattttt agccaggtga
      421 ttaaatactg tttgcaagac actttcattt atga
//
LOCUS       KCOD01002173             626 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 242012pyr ultra-conserved element
            locus uce-1300, sequence.
ACCESSION   KCOD01002173
VERSION     KCOD01002173.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 626)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 626)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..626
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="242012pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>626
                     /note="ultra-conserved element locus uce-1300"
BASE COUNT          192 a          109 c          127 g          198 t
ORIGIN      
        1 tcctgggttg gtgaagtttg cagactgcta ggcagaaatc agaaataaac ttttcctata
       61 gcatttgaca gtaggtgagc ttgtgtatag attctctgaa gttgccaaat gggaacagaa
      121 tttcttcaga gtggcctctg ctatgacacg tttatgttgc tgtgtgagtg tcttgcaagt
      181 tttgaagcct tgcacttcag ttttgttagc ctgttggaag aaatctcatt tagctggcat
      241 ttttacatct acattaattc ttttaaaaca ctgaagtgag tgttctacag ctatgtaaag
      301 aaacgcatta tcaaagcatt aagatatgat taaactgaca ttttcttaag aaaacgaaag
      361 gagcaggaaa aagccattct aaaaggactg agtgctacat actccagata ttatcttcag
      421 tgcttactca gggatcttta aagaagctta ttaccaagta ccctaagaag acaagtgtgg
      481 atgtgtacag atcagaggaa tgcaagttaa tgcacctgcc agattttact atcgtacaaa
      541 gcatgtcaat cagcactcag accttgcgtt taaaaatgtg ttccttcaga tttttttcag
      601 tgcagtatct cacatagcta gaattt
//
LOCUS       KCOD01002174             553 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 242125pyr ultra-conserved element
            locus uce-7540, sequence.
ACCESSION   KCOD01002174
VERSION     KCOD01002174.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 553)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 553)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..553
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="242125pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>553
                     /note="ultra-conserved element locus uce-7540"
BASE COUNT          140 a          132 c          161 g          120 t
ORIGIN      
        1 acttgagccg gttgcagacc ttgctgggga gcagtccgag tgtgtgagat ctcccttccc
       61 atttcagcat ctctgtaact tttgccctgc aggtttcgcc agcagcacag cagatgcagc
      121 ccacacagac gatacagcca ccgcagccga ctggaggtcg ccggaggagg gtggtggacg
      181 aagacccaga tgagaggagg cggaaatttc tggaaaggaa ccgagccgct gccacgcgct
      241 gcagacagaa gaggaaggtc tgggtgatgt cactggaaaa gaaagcagaa gagctcaccc
      301 agacaaacat gcagcttcag gtgcgagcca ctgtctgcgc ccctgaagac acagaggggc
      361 tctttgtgct tgactgacgg tgcctttggg gctacccccg cacagtcagt tcctagtggg
      421 agctcaggca taatcagtct gttaatcaag atgtgtgtgc ttcaattaaa gaaataatta
      481 cattttagcg ggggaagcca aaaagctgtc ttgggattta gaagccttca ctagatggag
      541 ttgtatttat ttt
//
LOCUS       KCOD01002175             604 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 242237pyr ultra-conserved element
            locus uce-7753, sequence.
ACCESSION   KCOD01002175
VERSION     KCOD01002175.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 604)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 604)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..604
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="242237pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>604
                     /note="ultra-conserved element locus uce-7753"
BASE COUNT          177 a          127 c          111 g          189 t
ORIGIN      
        1 agaaatcaaa tatgcggctg agccgcccct aagggtagct gcaaggctga gatgaaatca
       61 gctcagtcta cagccagaaa atgacgcata attacttaca caatatttca tccactttta
      121 tcaagctgta ggacaggcat atctgttgta attatattaa tgaaatgtgt cactacactg
      181 gtgttagtcc atttcattaa tgcaaaagac ttttgttgta tgctttacat ttggaaacag
      241 atttaagtat taagtggcta atgtctgcag ccggggaatc ctttccgaat ttgtaacact
      301 gaccagaaca gaccgcatta cactctccaa atggtgcatt tttgcatttg aatgtctgaa
      361 ttatcctggt ttcttagaga cgaccacaac accaacatct taaatcctca aaatattgtc
      421 cgcttcattg aatgctcatg atctaagcat atgtgtaatt attctgtaat tctccccaaa
      481 atgtgattcc ttggaaatgc atactagatc tcccctattg tagctgcaat gactatttcc
      541 ccgcttcttt aaatacggtc acaaggaagt ctgtgtgcct tggtgcaccg catgtgtaat
      601 gatg
//
LOCUS       KCOD01002176             756 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 242348pyr ultra-conserved element
            locus uce-3927, sequence.
ACCESSION   KCOD01002176
VERSION     KCOD01002176.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 756)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 756)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..756
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="242348pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>756
                     /note="ultra-conserved element locus uce-3927"
BASE COUNT          281 a          134 c          133 g          208 t
ORIGIN      
        1 aacgcagaga taattgatca catacatttt ttgtcaaatt agaagaccct tgaaacttta
       61 gctgtgcttc aagtctcagc aagctttttt aataggattg agtcacgtat gaggaaatac
      121 aaaaggaaaa gagaaagtca tcaatccaaa attccgatac tcaagtctga gccactgcac
      181 gctaccagaa taaatggaga aagcagaaaa agtcttgctt tgtaacatta aatgtgattg
      241 aagactgtac agttcttctt acgcttttag acattttgtc actttacctg gagaaatata
      301 cactgcttat tctgaattgc tgctgatgtc cagcacttgt caaaaccgct atctgtcaag
      361 cacttcacaa agtgttgcaa aatgacagat caggatgtct gaatagatgg agccccagga
      421 aaaacagaac agatagaaaa ttcatgactc taaactacat caaagcgact tctgtcaaca
      481 tcatgtcaaa agaaggaaaa aaagaactgt tcattttaga gggttttttt cattatataa
      541 acactttttt cacgtatgag ctaagtgtaa ggaaaaatta acttggtgta cagtatgatc
      601 atttgaatgt gccaaaaata ctctttaaat aatccaggaa taaggaaact tctaacagta
      661 gatactgtct ggcagttaaa accaatgaca tccaaaagaa atgcatgaag aatctatcag
      721 cttaaaatag gacaaaccat ctggctccaa agaaat
//
LOCUS       KCOD01002177             780 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 242461pyr ultra-conserved element
            locus uce-3687, sequence.
ACCESSION   KCOD01002177
VERSION     KCOD01002177.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 780)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 780)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..780
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="242461pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>780
                     /note="ultra-conserved element locus uce-3687"
BASE COUNT          238 a          147 c          155 g          240 t
ORIGIN      
        1 tcctttacat tacgtgtttt cccacacggc agtgattcta ttgccgctgc tatggaaaaa
       61 cttgaaaaaa tataaataaa atatgcccaa gcatgcaagt caatgatctg tgtgttaagc
      121 ctattggcac atacaggaca attttattgc atgacctact ggttaaaaac atcaaaaata
      181 taagtcaagt catttgaaga actgctgttt agtgagttag aatgaatgaa gtctttattg
      241 agtacacgct tccagattca tcactggttc tgttctagtc atgccctatc ctagtcctgc
      301 cccaggcagt ctttttgagg ccacttgacc tgccagtcat atttcagaaa ctactgatac
      361 ggttcctgat ttagtttaga ttccaaacag gctagctgct ggattacaga ctaatgaccc
      421 atcagatgct aaaggcaaag gcttaaagtg ctctagtgaa ttaagcctca acattgtctg
      481 aagggaagaa tttattatgt cattaaactt gattcaataa gtttcatttc tttagatgca
      541 tttcacaagc aagaagtcag gaattagtgg gagggattct cttcaggtat attcaagtag
      601 agcagcaagg gatgccattt cgtagaattt tggctgtatt gctaaaaaca ataggttgag
      661 aaaactcttc gtagctgatt aactaaccat ggactcctca aactgggttc acttgaatat
      721 atgcttcact tggtaaatac atagcaaagt gaggcttgcc tgatttgatg agacccttgg
//
LOCUS       KCOD01002178             531 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 242572pyr ultra-conserved element
            locus uce-5992, sequence.
ACCESSION   KCOD01002178
VERSION     KCOD01002178.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 531)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 531)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..531
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="242572pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>531
                     /note="ultra-conserved element locus uce-5992"
BASE COUNT          152 a          122 c           95 g          162 t
ORIGIN      
        1 cttgttcagc ccttgcagtc ttggtctctt tagcacagat ctcctcaaaa aggcaatcct
       61 tgcaccagaa agcctcggat ttgccctcag ctcttccata ggcattgatt aggtgtcctt
      121 cttcccttaa aatcaaaaaa gaaaagggac atgatttaaa actaaaatag aatgaagtgc
      181 attgtacaaa ggattatttc aagtaattct ccttgaaact gtaacaaagg aatgtttcct
      241 ggggattaaa tggactgtca ggtaatcaga aaagttgttt taggttttcc tcgagaagaa
      301 aattttggat ggattttgtt tctggtgctt tgtgacactt tacagcttat tccatcatgt
      361 cacaccagtt tatttcatta ttcataaaca tgctgaatgc caaaatgatc gcagaagcta
      421 tggggctctt acacgctcag caactaagcc ctccccatcc cattgcaatg caaggaccca
      481 gccctctcaa tgtccttcca cagggatttt cttttaacca ctgcccatcc t
//
LOCUS       KCOD01002179             635 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 242680pyr ultra-conserved element
            locus uce-1047, sequence.
ACCESSION   KCOD01002179
VERSION     KCOD01002179.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 635)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 635)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..635
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="242680pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>635
                     /note="ultra-conserved element locus uce-1047"
BASE COUNT          183 a          134 c          131 g          187 t
ORIGIN      
        1 gtgttcaggc aggagaagca gcaggacaaa tattttcaca cattttcaga tagctgagtg
       61 aaaccggctc caccagaatt tacagttgaa gactaccaga atttacaact tgtgaaattg
      121 tggctgtctg tattttctca ttacagtgtg cttgccagag atagagaagg tctttttttt
      181 tgccatctac tgtcgcacta cttcctagtt aaaccttgtc tcaagttatc aacactctct
      241 ggagagataa gcttcttctc acttacaacc tgtcactaat aatcgaactt tcaagactcc
      301 atctcgaaaa gagactactg gaggcacaca ggtcacagga attaactgcc accagtcctt
      361 gcagaaaact aagctcatca atctatagct tctcgtcata attagaataa cggcttcgaa
      421 aatttgggct gatgttgact cggtcttatg ccacaaagac cactgattaa aatcttggtg
      481 tgaaagttaa tgataaatgc tggtggcgtt gtcgtggaga cagggacaaa caattccctt
      541 gccgtgacat tttcaatgtc ctgcagaaga aaaactgtcc tctttagtgt ggcactgtat
      601 gaagcttatt tatggctaca gggcttgctg gattg
//
LOCUS       KCOD01002180             717 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 242792pyr ultra-conserved element
            locus uce-6496, sequence.
ACCESSION   KCOD01002180
VERSION     KCOD01002180.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 717)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 717)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..717
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="242792pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>717
                     /note="ultra-conserved element locus uce-6496"
BASE COUNT          202 a          136 c          169 g          210 t
ORIGIN      
        1 aatgaagaca ttttcaagca gcaaggcttg caagtcattg tcttgaaatg cttagatcag
       61 gtggcactct ctgttagaaa agtaagctct gtaatgatat tgattgcttc caaggccata
      121 ttagagatga agacaagtcc caggagacag gttgttgtca ccttgacctt gggtcagagc
      181 tggaccactg acccctgaca ctcaggactt ctgcattgca tcgtgatatc tttcatgcct
      241 acagacaaag tcagcagggg acatgtgtcg atgtggccct tgccaaatca gaattgactg
      301 gcctgtagga agctggagag cagcgggaaa tgtgggttaa agtatgtcaa taatgtttca
      361 caagaacaat ttctcccaag aattgtagct gttggaatgt tttgacattt attcggtaga
      421 gaaatgtagc atgttttgtg aagcacttca agagagctgc tgctaactgc cgcggtgtat
      481 tgatcttcct gttaaattgc atgggcacac ttgggagatc attgagattc aggcaacagg
      541 acagaaagga tcggctgcac ccgatggtca ctaatggtaa ttggtttcga tccttgcact
      601 tgaagaagct gtgatttact tggttcacag atgaattgta gacactaaat attttgaaaa
      661 gaaaatacac tgtgatttct ttttctcatg tcatttacaa attattgcct ccacttc
//
LOCUS       KCOD01002181             343 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 242894pyr ultra-conserved element
            locus uce-2064, sequence.
ACCESSION   KCOD01002181
VERSION     KCOD01002181.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 343)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 343)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..343
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="242894pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>343
                     /note="ultra-conserved element locus uce-2064"
BASE COUNT          107 a           58 c           71 g          107 t
ORIGIN      
        1 cttaggactg atcaacacac ccatttagga gaggcatctg ttaatggccc tgtatgatat
       61 gtgatgtcta ctaccttggc tgaagagaaa gaactgatgt ccaggtgttt gagtttgagg
      121 atatcatcta gaccctgttg aagccagtca ctgctgcact aatttcgcaa ggaatcagga
      181 ccagcaacat ttatattcta gattttaaga cattgtacag aaattcataa gtgtaaaaat
      241 attgcacatt gagaaatacc aataattttt gcgtatgttt atattgtatt gttctaaata
      301 atgggggcct gtgaaataag atcctgctac ccatgtaatg atg
//
LOCUS       KCOD01002182             700 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 243001pyr ultra-conserved element
            locus uce-3516, sequence.
ACCESSION   KCOD01002182
VERSION     KCOD01002182.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 700)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 700)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..700
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="243001pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>700
                     /note="ultra-conserved element locus uce-3516"
BASE COUNT          203 a          124 c          137 g          236 t
ORIGIN      
        1 tcatacttgg taaatgttgt ccatacactc tgacacatct ttcattatct gcaggtgtaa
       61 acttggcaca gttgcaggtc aggatcatat gatagtgtaa attcaaattg attctgcatt
      121 ctgcacagag gtggcaggcc ttgccagaag taatataaag taaaggtctt tggggtacca
      181 gtttaggttt gggtttggca ccagaaagac cagagaagtg ggtagtaaaa atgagcagta
      241 acttgaagat attttaataa cagctgctct gttttctttc ttactgcact tttattttat
      301 ttgcactttt gtagcttcat cttgatgaca tggctattat tttatggcag tttcaagcag
      361 ttaattaatg aattgcacac atgtgacatg acaccacctt gcccaattat ctctggcatc
      421 tatttttatg gtactgttgc tttgtgaatt gttttagatt gtaaattggt gctggaaact
      481 cttattttaa tagtcaaaac aatacaatag taatgcttga tggatgacgt gcctcaatga
      541 caaattgcca tgcatgatct cgtgaaatcc acagaagaac atggagatac tggttaatgc
      601 ttctctgttc tttaaatgta aacccctctg ctgttaaatc cacaacacct catgaagtcc
      661 gattgccata tttctgacaa catttggaag agaacgtata
//
LOCUS       KCOD01002183             544 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 243099pyr ultra-conserved element
            locus uce-1996, sequence.
ACCESSION   KCOD01002183
VERSION     KCOD01002183.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 544)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 544)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..544
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="243099pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>544
                     /note="ultra-conserved element locus uce-1996"
BASE COUNT          171 a           86 c          122 g          165 t
ORIGIN      
        1 aaacaattca aaatatgcaa ctaatatcgt gtagttaaac tgatgtggca tgcatgttgt
       61 tttgcaagct aacaggttaa atatggcttt gctttaagat tcccatcaaa tttcattttt
      121 atagagaaat ttctgaaagc agaagggggt tgagggaggg tgaggtaaaa agaaataaat
      181 cattgtagtc tcaggaacag taatccttgt tgaggatttt ggctgattga tataaataac
      241 atcgtccccg ccatctgtcc gaagagggac ctttccagtt agtgttaagc tgcaacggca
      301 gaataattaa tgaatggtgt cctttgtgct ggtaataaag acaagacaaa ttatgttata
      361 atccaactgc tgctcatttg tcacagccaa ataaaatgtc aaataaaagt gaggggggca
      421 ctgtgtttgt ttaatggact gcaagctacc tgttcgtatt gttgacagac aactatagtg
      481 caagttgtga atgtggaagg cggcaaaacg ccgtgcatcg aattcagcaa ttctcctttt
      541 tttt
//
LOCUS       KCOD01002184             713 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 243211pyr ultra-conserved element
            locus uce-6598, sequence.
ACCESSION   KCOD01002184
VERSION     KCOD01002184.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 713)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 713)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..713
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="243211pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>713
                     /note="ultra-conserved element locus uce-6598"
BASE COUNT          206 a          158 c          133 g          216 t
ORIGIN      
        1 ttataaatat ttcataccaa atatttaaca ttattccttc cccaatcgga tcagctttga
       61 aatgctcctc aaagtgaatt ctcccctaac aatggcttga cgcaaaagcc ttttttctct
      121 cttaagaaga gaaggctgca catggtctgc taccatagca gcatgaatag ttcttattta
      181 atggaaaata aaagatactt tacattaatt cagtggggga tggaaagctg ggcacatgcg
      241 taccttgtgc ttcaaacatg gaggaacatc ataccttgac ctcccctctc ctggtcccat
      301 gattattacc cagcttgcat tagaaccgta atgggaagtg acaagtttat gtaaatgatc
      361 cacacaagga ttttgctctt gtaaaacaga gcagttactc tgggctttct aattatttca
      421 tgccttgtgg ttctgtgatg gggcagagat gactattact tgaaaagtat attgtgattg
      481 acaagccact gtccccctgg aactcattaa ggcctgtgct ttgcaagagc gagtaaaaaa
      541 accctaccag gcaccccagt gccggctgtt ccttcagatc gtttgctggg atttttgcac
      601 tgatagagaa aagcacaatc tgcatgtatc tcaaacaagt accacctcct ggctacaaat
      661 tgaccaatta tcctctgctt tcacattttc atttttaaat ctgtaagatt agc
//
LOCUS       KCOD01002185             741 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 243320pyr ultra-conserved element
            locus uce-6906, sequence.
ACCESSION   KCOD01002185
VERSION     KCOD01002185.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 741)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 741)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..741
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="243320pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>741
                     /note="ultra-conserved element locus uce-6906"
BASE COUNT          194 a          158 c          157 g          232 t
ORIGIN      
        1 agaaataact aactgaagtg tgtggaaccc ctgtcagcag aaaaatatta tttccttctc
       61 ctgagtgttt agtataacaa tataagcatt gaccgttgtg tactttggta ttattttcct
      121 ttcctgctta tagtcccttc tcatgtttct ccatcatttt aggcccctaa tagggatagg
      181 atgaacccat tgatgtcggc acatggaggc ctgctagtgg catgcctttg gttttagtct
      241 cctagcagca gccattcatg ttatgtgggc tttctttttt gggcattgcc cacccctgaa
      301 tctgacttca ggcatttttc actgcctgtt ctgcatgaat agccacaggc ctcttgccaa
      361 ttgtcccccc tccttgaaag ccagcctcag ccaaaggcct tttcaagtgt gatcccagag
      421 tgccacacag gctttcaggg tattgttgtc gagatgaggg ccctgcactg gaaagtgggg
      481 tcagaagaga aagcacaata aggggtgatg gaggcttcat gcagtcctca gatgctggcc
      541 tgtttattaa tttacaaaac taatgtcact gtctttagag aagagattga gtgaaaaaga
      601 tgccctttga agagaagaac tgcttttgat gcattaccaa aacaccgctt tattaaattg
      661 attttaagta cagctaataa aagttcagaa acaccaataa aatattgaag gtctggattc
      721 agtgtttttt ttttcctcat c
//
LOCUS       KCOD01002186             780 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 243434pyr ultra-conserved element
            locus uce-7642, sequence.
ACCESSION   KCOD01002186
VERSION     KCOD01002186.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 780)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 780)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..780
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="243434pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>780
                     /note="ultra-conserved element locus uce-7642"
BASE COUNT          187 a          198 c          148 g          247 t
ORIGIN      
        1 ttatttttca gttttccacc tgtgacgtac agggggcggg ttaggagaga agaacggctc
       61 cttgaaagcc acctctggca tgactattac aagagacaat gaactcgaac atgcttctct
      121 ttttttcctc caaagatcat gaactcgaaa ctcagttgtg catgcatgaa agttctataa
      181 acattactta aacagcagcc aaaagacctt tgccagctct ggcctacttc tccccttgta
      241 ggggctcagc actcccactc agttgactac ttgtcctact ctttgccctc tctgctctgc
      301 tgcaatcgtc ctggaatttt cctctatgca actgctgtcc aaaccagctg cacccactac
      361 atcttcagca gtggaccgag gagggtatta atcatatttt tgaggaggac actctgctat
      421 ttatctccct gacacctcta gcgtttggga gcccactgca gcacacagcc cattgactag
      481 taatattaca cattaccgtg ctccattgcc tctccctgcc ctcttcattg agtggctgtt
      541 caacagtgga gttgtgtttg ttcaatcaga cataatttat accttttttg ttccttctgg
      601 agagctcttg ctaattttta gtctaagcac tgcgttttcc atataattct agctccgacg
      661 tcgatggtca aagagatctg acctgttcaa acttgttggt tttaaatcac tgtcaaggga
      721 gatcatctca tacttccctt aaagatccag gttttattgc atgtctagga atatgtatgt
//
LOCUS       KCOD01002187             888 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 243547pyr ultra-conserved element
            locus uce-1933, sequence.
ACCESSION   KCOD01002187
VERSION     KCOD01002187.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 888)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 888)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..888
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="243547pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>888
                     /note="ultra-conserved element locus uce-1933"
BASE COUNT          258 a          165 c          189 g          276 t
ORIGIN      
        1 taatccagta gatgataagt aagatgaata tttatctcat gttgcagcat attccttgca
       61 taattgacag aatagttagt gaatccttta gaccagtttg gttttctctt tttgtattga
      121 ggtaatgtta catttatagt taatttcctt ttaaactgtt ttacaggata atttcggatt
      181 atattaacaa ataaaaaggg catgacagaa agaaaagaaa gcagcatgat aaacgttgtg
      241 accttctact gagaaacagt atggcatgca taaaggactg ctgcattaaa tggacaaggg
      301 gggagaagga agtgggtaat tatttgtagc agtgctttta ctgttgttgg aatgagacag
      361 actaacagtg gcagcagtca ttttgctgaa tcaaagtcca tgttagtcgc attatacact
      421 gccacaaaag gttgttaagg ctggtattag catgtaccac tgaggacatt ggaaggactc
      481 gatctgtcac actaaatcgc cttcttgccc tcaaccattg aagtctccag ctcctctgac
      541 atgttctttc attaatggcc tggccttgac aactgatcct aattgcctct gaaccgcact
      601 tcatgtatta ttggtgtctg cctgccctgg ttcatgtcaa caagccacag catgcacagg
      661 gtgtgcccgg tgccttttgc tgaaacgatg ctcacatagt cgtttacctc tgagggtttg
      721 ggtctcactg ggaatgaagt ataaagctaa agatcttcct gtctcttctt agtaatactt
      781 taatgtggat ctgtgctatg tacttattag gcatgtatga aggcttagta tagcatcagg
      841 ccaattatgc aagattccat taaagcagag acaaaacaaa acttgcct
//
LOCUS       KCOD01002188             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 243659pyr ultra-conserved element
            locus uce-3196, sequence.
ACCESSION   KCOD01002188
VERSION     KCOD01002188.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="243659pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-3196"
BASE COUNT          224 a          167 c          151 g          160 t
ORIGIN      
        1 agcattttgt aactctaccc agccttcttc ccacccctta acaccccacc ccatcagcgc
       61 tgctccccca gcacaaattg ccacacatct gtacaaagga caagtggaag aataaggtga
      121 cagttcttta aggaaagaat aaaaatgcaa attaacaaac accaaatttg ctgtaaacat
      181 taaatacttc agacatgaaa ccttctgtgc tacaagagtg ctttcagcat tatctattca
      241 cagcagttcc tctgctcctg agggtcataa acactgagag atggagccag caaaaaagct
      301 ctagttgaaa ttcagctcac agcaaaagca atttccgagt gtgcaaagtg ctgtcagcag
      361 gcctgatgtt tgtgtatgaa atatagacaa tatgactggc ccatcggcag tcactgtcag
      421 cctgatggat ggggcctgaa aagaagtaaa gcggctgccg ttagggccca gtctatcaga
      481 tgcttgatgg agattcgggg gcttaataga ggtaaaagtt tcttctaatc ggatttccag
      541 cggtgatcac aaagaaaata aaagggacag cgatgtgata cgagggcaca agcaaggctt
      601 ccctcagcca cagtacaaaa cagaacagga aagcgatgcc ttctcaatat ttgttcttgg
      661 acttgactgt cccagaacag acaggacagc cctacagctc ac
//
LOCUS       KCOD01002189             523 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 243768pyr ultra-conserved element
            locus uce-4975, sequence.
ACCESSION   KCOD01002189
VERSION     KCOD01002189.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 523)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 523)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="243768pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>523
                     /note="ultra-conserved element locus uce-4975"
BASE COUNT          183 a          104 c          104 g          132 t
ORIGIN      
        1 ttctctgccc ctacatatat tacaaaaacc ttcaggtgtt tgcagacact tcagacagag
       61 caaaatatag ctcaagtcat gtgccaactt ttaaaattta cttttatcta gctggagtca
      121 ggtgttttgt cataacaaac tgaaacaaag gcttttttta ttgctcaaga tattcaatgg
      181 cttttgtgtt cctagcgtca gcaggaacgt cagaggattg tatccaagga gctaaatgtg
      241 caagacctag ggtcaaagca gctgaataca ccaacctcag aaaacacaga caatgaattg
      301 caaatgacac tcaaaacaaa acgggaaaaa aaccttcaca cagaaaacta caaaagaact
      361 ccacagatac tgaattggct ttctgtacac actgatcctg cttaactgtg tgtggtaact
      421 aaccaaacct tctgagacta atagtcataa aatagagact caggggtggg ggaaagataa
      481 tgggatgggg gagaactgta aggaaaagat tgcattgctc ctc
//
LOCUS       KCOD01002190             363 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 243868pyr ultra-conserved element
            locus uce-4474, sequence.
ACCESSION   KCOD01002190
VERSION     KCOD01002190.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 363)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 363)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..363
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="243868pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>363
                     /note="ultra-conserved element locus uce-4474"
BASE COUNT          114 a           62 c           60 g          127 t
ORIGIN      
        1 taatgggcag tgaagaggaa ccagcagatg ttatgaaaag atgccaatta agcaaaatta
       61 acactaatta tctagattga ccatgagtac taagaacatg tacttgctgt catgatttca
      121 attaaagcat tgtagcttgt ggttttaaat tttattaagt gcttgtgctg atttttttct
      181 tggtggcctg ccccccatga atgcaaaagc ctttttgcaa tttactctta acctatccac
      241 tgtgtattag acaactctat taattattat agactgttat tgcagctttc ctgaccttca
      301 cattgggtcc tatctatgct gatctaaatg cattgtttta atgatttcca aaaaaaaaaa
      361 aaa
//
LOCUS       KCOD01002191             547 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 243973pyr ultra-conserved element
            locus uce-1059, sequence.
ACCESSION   KCOD01002191
VERSION     KCOD01002191.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 547)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 547)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..547
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="243973pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>547
                     /note="ultra-conserved element locus uce-1059"
BASE COUNT          166 a          128 c           95 g          158 t
ORIGIN      
        1 aactaaaaca aaatgcattc ttttgacccg gccagcctct aacacagcct cagcatcaac
       61 tcttaatatc tattatttgt acctgaccaa aagcaactcc tgcatttcta gtggccacca
      121 tgaaggaggt atttatatcc cccatgaaag gctcataagc atcgtgagca cacctgaata
      181 gttctgaagt gtgctagctg cacggcatgt catggtgtgc actgattgcc ttatcttctc
      241 atttatcaca gatgagttgg aaccaacctt gctgaaaccc acttgcattg tcctgataaa
      301 attgcaagat ccttgcttct gttttcctgt tgcggggctg acatacacct acaatattac
      361 aaatggtaac attcataaaa tagaatcaag tactaacaca accttctcat tgccgccacc
      421 taaaactgct cagcgtagct ggttaataag gtcaaacgaa aagataaata aaattgattc
      481 atggcaatgc tctcaacaag gtcttttcct tgctgttctt agatttcaaa tcgttgggtt
      541 gaaagaa
//
LOCUS       KCOD01002192             550 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 244080pyr ultra-conserved element
            locus uce-442, sequence.
ACCESSION   KCOD01002192
VERSION     KCOD01002192.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 550)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 550)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..550
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="244080pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>550
                     /note="ultra-conserved element locus uce-442"
BASE COUNT          200 a           84 c          101 g          165 t
ORIGIN      
        1 ctctttaatc acaggatgag cttttaaaag gaaaacaacc aagtccggca ggttctcact
       61 atgatatttg ctgggagata attcaattat tgtagaaaat tattttaaac attaagatgc
      121 acaaagttca gtttcccctg tttctgcgac tatcacccaa gctattgata agatgtctaa
      181 atttattgca gaataattct gcaggaaaag agataaaagg ttcctgaata aaatatgagg
      241 cgagagctgt aaattgtagc aatgcatatc atttcattca aatgtaggaa gcaattacca
      301 tctgctatac tcatcagttc cctcctttat gacttaatta tatgtttaat gctatcagat
      361 caaggaaagg gcacaataga tgaatgagtg aaagaaacag aaaagattca gcaacaagac
      421 aaaaggcaga tgaaaagtaa cccaagaaca gaattgattt catttgttgg gagaggagtt
      481 aatttaaata gtatattcta tcatctcccg tgctgtactg agataatata aatcatgtgt
      541 ttgtgaattt
//
LOCUS       KCOD01002193             333 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 244178pyr ultra-conserved element
            locus uce-3121, sequence.
ACCESSION   KCOD01002193
VERSION     KCOD01002193.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 333)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 333)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..333
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="244178pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>333
                     /note="ultra-conserved element locus uce-3121"
BASE COUNT          106 a           78 c           41 g          108 t
ORIGIN      
        1 aagtttgtta caaaacaaag ttggtctccc aaaagaagac tcccctcctt ctactttcag
       61 aagaaagttc tagaagttct taccgtcaca tttttgtgtt acttcattaa acttgtgtcc
      121 agctgggcat ttgcactcaa aagatccaac agtattaata caatttcccc cttgacagat
      181 cccagggatg gcttggcatt catccacatc tatgatataa aaaacaccca cttttatttc
      241 atttctcacg aacagccata ataatttgtc tacacagaaa ttaaatatgc ttaaatccat
      301 tcttcaccca tcataatatt atgatacttg ctt
//
LOCUS       KCOD01002194             585 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 244282pyr ultra-conserved element
            locus uce-2489, sequence.
ACCESSION   KCOD01002194
VERSION     KCOD01002194.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 585)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 585)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..585
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="244282pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>585
                     /note="ultra-conserved element locus uce-2489"
BASE COUNT          171 a          120 c          113 g          181 t
ORIGIN      
        1 aaagatattc tactataaat ttttacacag ttgttaatta actattcaag aataaagttg
       61 aagaaattat tgccattttt attatacttc aggaggtgag ttgtagcttt ttgtaacctg
      121 ctgccctgtc aggccttatt attttcacaa agatctgaca atcgtggggt catatttgtt
      181 ggctgcttgt gacaacattc aaaaggggca ctatatatca ccgaaacagc tcacaaactg
      241 gctagtcaca ttatttatta tgagccacac atgtgacaaa ttatttaact cagtgactcc
      301 taataagtca aagagcaagc aattagctaa cgcagtatga ggcctgtttg tggcaattta
      361 tagatgctct caagctgtca cagcacttca aagtgccatt cctcttaatg actcacttga
      421 tatgacaagc catacacagc acacatggca gcggtgaaat tggcagccga ttcttttgct
      481 tgaagcttct tccccaacag ctgtttacat gtttgcagac ttctctcttg cgctggaaat
      541 gtgaggcact gtgttccaag agagcaagag ctgttcaagg ctgct
//
LOCUS       KCOD01002195             456 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 244393pyr ultra-conserved element
            locus uce-6077, sequence.
ACCESSION   KCOD01002195
VERSION     KCOD01002195.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 456)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 456)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..456
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="244393pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>456
                     /note="ultra-conserved element locus uce-6077"
BASE COUNT          168 a           91 c           67 g          130 t
ORIGIN      
        1 aaatcatgac aagtgaaata acttgctttg gttgagaaat cacttagcct atcattattt
       61 tacacaacca aaaccagtgc cggccataat ctgctgcctt tcaagttgaa aaaatacatt
      121 acttatgcag agaatgtttc taatgtaaca aagagaagga ataaaaatgc cttacaacag
      181 ttttattaaa aacaaattcc cacagtaaat acatatacac tctagtacca tggtgaaaca
      241 gccaaagaca tcactgttaa gtgctatggg aagtacttat aaattacttg aaataaaaaa
      301 cattgttgcc tggacatcag ggttgaaatg ctgcagtttg taataaatta acacagaact
      361 tcacttcccc tcctctaaca aagcagccat ttgtctgaat aacccacatt cagctgtgag
      421 ttatattttc acaactgcaa ctgcattcat ttgcaa
//
LOCUS       KCOD01002196             527 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 244504pyr ultra-conserved element
            locus uce-3812, sequence.
ACCESSION   KCOD01002196
VERSION     KCOD01002196.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 527)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 527)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..527
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="244504pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>527
                     /note="ultra-conserved element locus uce-3812"
BASE COUNT          141 a          104 c          139 g          143 t
ORIGIN      
        1 ttttgggaag agcctccccc ccctccctct gtggaaggga tgatgtcgca ggcattacct
       61 catgttccac gccacgcagt gagtcaaact ctgctaagta actaaataaa gatgtaattt
      121 taatgatgat taaattgaag cacctcatta atttcatgtg agaggtgggg aagtacacgg
      181 cagctctttc cctaaattca ttgtttgtct ggccgcgaga cgtcccctct caacgtctgg
      241 ttgagtctaa tttaagtatg taaatttaat ggttcagtaa gtaaaattgc ctttattgtt
      301 tggaatggtt tgcgcagtaa tttacgagct agcaaggctc atttgatagg agtctatgat
      361 ggagtaggtg actacagtga aggacatgtt tatcttaagg atacgggaga agaacacaga
      421 tacggaacat ctgtaatcga ggagcttggc agaacagcgc tgctggagac ggccctggga
      481 caaagcagcc ctgagggctc tcctggggct tgcacggaat gggatgg
//
LOCUS       KCOD01002197             612 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 244614pyr ultra-conserved element
            locus uce-4719, sequence.
ACCESSION   KCOD01002197
VERSION     KCOD01002197.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 612)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 612)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="244614pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>612
                     /note="ultra-conserved element locus uce-4719"
BASE COUNT          192 a          102 c          118 g          200 t
ORIGIN      
        1 attagctttc actgaggata agcttttcat ctgccctcat ctgcaaagcc aagttattgt
       61 aatggaagcc gccaacaggc taaggaggga aggaatttga aagtttggta gaaatgtatg
      121 ttaaaaatct gtttaagaca atatgaaaaa ctgctcacgt acatacaaat aggtgaaaat
      181 tctttttcag ctttatttac ctgagaatga atttcagttt gaagaggcct ttatgtcgtt
      241 tcaggcaaag cacctaagat ataagcaatt ttcaacaaga gtactacaca tttgtcttta
      301 taacaatttg tatgtaacag cttttatgca aatgatgcta aagtggcacc ttttttctaa
      361 attggacatt tttatggtta taattttctt ctgtaataac agcaaaaaaa tggttgtccc
      421 agtggagttg agcatttcat ctctagtgct gttttgtgaa gttggaatga caagtttctt
      481 tcatttgcgc aaagaatgac aaaaagaagt attttttgtc attcttgtct gactgggttg
      541 aggcagttac acttggaagc agcaccagtc ccctgacacc aacctctgcc atcaagaatg
      601 gtatcataaa gt
//
LOCUS       KCOD01002198             623 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 244723pyr ultra-conserved element
            locus uce-6398, sequence.
ACCESSION   KCOD01002198
VERSION     KCOD01002198.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 623)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 623)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="244723pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>623
                     /note="ultra-conserved element locus uce-6398"
BASE COUNT          190 a          109 c          114 g          210 t
ORIGIN      
        1 gaaatcccct tatgtctgaa gctgtccttt ttaacacaca ccagactaat tatttaaaag
       61 ttcttgtaaa attagaagac atagcccagt cctttaatta gaatacactg tgaataggga
      121 tagcatatgg aggggaatgt caagaagagg gtgccagggg cagatcctag gaaatctgta
      181 ttcatttctg cctcctattt gttcagtaat ctctaccatc ataactaaat cttggagcac
      241 tgatgtagtt cgagttgttg ttgactcaac gtcaaaattc aatcactggg ggttttgcat
      301 cagccgggcc acttatttgt ctaataaatc cgtcattttg taagaaaaat atttgagcag
      361 ccgtacttga cctcttggta tccacaagcc acatttattt ctaccagttt acaaatgcaa
      421 aatggagatg atcatcttaa tgcctcgagg tactgtgttg atttctgatt ggattttaga
      481 tggaaatgtc tattttaaat accccgtgat taaattgtac atataataga attcatgcct
      541 cttcaaatga aatcgtgatt tgcgaacccc gaatttattt taaaggaaat attatttaaa
      601 ttgttttctt aaatgatttg tga
//
LOCUS       KCOD01002199             619 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 244830pyr ultra-conserved element
            locus uce-7697, sequence.
ACCESSION   KCOD01002199
VERSION     KCOD01002199.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 619)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 619)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..619
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="244830pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>619
                     /note="ultra-conserved element locus uce-7697"
BASE COUNT          165 a          153 c          161 g          140 t
ORIGIN      
        1 gggctttccc tcttgtgcca tggaggtggt cagttagtct gaggacttcc aaaaggcatc
       61 attctgtgat cattgacact catccagaac tagaagattc ctgaagccca tcttatggcc
      121 ctcaccaccc ctgctaccag caaaggtggt gggaagggta gcactcaaga gacactgaca
      181 ctggagaagc aagggctggt aaacaacccc ctcccatccc caatcccagt actttgaaga
      241 tccgtgtgtt ttgaatttaa ttttgatttt ctcgacttca gcagattaaa gttgaaataa
      301 cctacaaatt acttaatgtg ttgtaaatct tctgaaatta aggcctaatg ggtaacacat
      361 gtcggcaggc aggagacaca gaggggaagc tgggtttctc accagctcaa ggaatgctgt
      421 gaggatctga gccaaaggag agggctgggg caggggatgt ggagtcgcag cccttctgcc
      481 caccttacct ctgggtcatc catgccatgg caagggggat aacaaccaga ggggctgcac
      541 cactgaagga accgggtggc aggatgcttg tgggccagca agggatgcca cagaaaaccc
      601 acttcacctc atttcccac
//
LOCUS       KCOD01002200             669 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 244939pyr ultra-conserved element
            locus uce-3093, sequence.
ACCESSION   KCOD01002200
VERSION     KCOD01002200.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 669)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 669)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..669
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="244939pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>669
                     /note="ultra-conserved element locus uce-3093"
BASE COUNT          185 a          146 c          115 g          223 t
ORIGIN      
        1 aggaaaccgt catgtcctgt catctgtcta ttaccactgc tcggttgctg taatcttcct
       61 gtgttgactg tgaaaattgc atctggcttt aatatgaaat tcatgaagat ctctactttt
      121 gagcaactgt caaaacagct tcttatactt caacctgaac atttagcttt gtgagaatca
      181 ctgggaaaaa aaggacctcc ctctcctctt actttcctcc ttcaactgcc tttcccaggg
      241 ctctccttta ctttctatct acatacctat tagctctctg tttcaataac actgctctgg
      301 cttccacgaa agtgcttttt aatgtaggag atgtacttca gccataacac cagggtcact
      361 ttctgagtaa cattttatgg gattgattaa actttaacac cataactgtt gactttatgg
      421 gccaaggaag agacactgag tgctaagctc tggataattt gtgcttcaca aaaaatcaga
      481 tagagatagg gtttaatgtg tttgatgaag caaccctttt tttttctcca gtgtgtccta
      541 ttttaaaaga cccacaacat acagtcttca acactaatga agtccatggg aagaatacga
      601 gtttgctctt tccttggctc caaatgtgaa cacctcatgt tttttgttac tgctagaaag
      661 aaaatgaat
//
LOCUS       KCOD01002201             514 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 245050pyr ultra-conserved element
            locus uce-6700, sequence.
ACCESSION   KCOD01002201
VERSION     KCOD01002201.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 514)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 514)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="245050pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>514
                     /note="ultra-conserved element locus uce-6700"
BASE COUNT          176 a           94 c           77 g          167 t
ORIGIN      
        1 taggttaaat aatgggaagt atacctatgt ctacacaaaa tacaactaac tgctttgcat
       61 ttcactcagc aatatgccag tatacccaag catctcaaca tcactaacct ctgtaaaatg
      121 ctatagaaaa agtggcctaa acaaatgaaa tgttgatctg ccttttatta atttcatttt
      181 ttatcttctt gtatacagac gtttgacagc tgtgacattc atgggcaatg catttgaaaa
      241 agaagacata aatattcaga gacatattag aatgctgttc aatgtaagca cctgtctact
      301 tagtgttgac agaaaatcat ttactttgct ttatgcatgt tctctccaga gacaacagag
      361 gtcctatttt atttaaagat ctggtcccaa catcagtctt gaaaatgcaa tatatacatc
      421 taattatatt tattaaggaa acaactttgg tttatagtaa tactgaaaca attcaacctc
      481 tacttcagaa tttccttccc tggggagatg aaag
//
LOCUS       KCOD01002202             401 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 245157pyr ultra-conserved element
            locus uce-7858, sequence.
ACCESSION   KCOD01002202
VERSION     KCOD01002202.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 401)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 401)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..401
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="245157pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>401
                     /note="ultra-conserved element locus uce-7858"
BASE COUNT          125 a           63 c           58 g          155 t
ORIGIN      
        1 atgacttctt atattttgtg catgtgtatt ttagaaagaa acggcgtagc ttggaaataa
       61 aatgctacat tttttcctgc tgttgttaaa ttacattaaa gtaggaaagc acctaagcag
      121 agaagtgtga attctgccaa tctcaaaatg taacgcttat tatctttaaa agcattttgt
      181 tacttttata atacctgaag tgatataata gtgtcagtca cttaaccaca tcttagagta
      241 tagtatcttc atcttaagta ctattatttc cagtatttta ataattttca cacagtcctg
      301 aaatgtgatc ttttgtgctc tgatgacact taaattaata gcataatttt ctggtacttg
      361 caacagttgc tttccatttt gatacatttt tctatatcac a
//
LOCUS       KCOD01002203             507 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 245266pyr ultra-conserved element
            locus uce-3539, sequence.
ACCESSION   KCOD01002203
VERSION     KCOD01002203.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 507)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 507)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..507
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="245266pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>507
                     /note="ultra-conserved element locus uce-3539"
BASE COUNT          143 a          109 c           99 g          156 t
ORIGIN      
        1 gctgctgaga tgctgacccc tgctctgccc ctatgcccct tgaccctgac acatctgacc
       61 agtgatgact ctgagggtgg caaattaata gcagcattgc ttgttaattg cataagagaa
      121 aagccaaaaa tttatcacct cagtcatggc cattgcttcc ctttgacccc cttctcccac
      181 aaggctttag ctgatggtca catctgtggt ttttctgtat cctacatatt tgccgtataa
      241 ttattcagca tcaaacctta ttaatcaaat cgatgctgtg ttttaaatgg aaattgctgg
      301 attaatacag gcattcattt catcctgaaa atcttgatgg ctttagcaca cagaatacaa
      361 gcagaatatg aaagaaggga tgtagagacc tgattgaatt aggggaggca tgctgcacag
      421 taaattacat atgccagcag gggtccttgc ttttatagta aaatacttct gtagagtgta
      481 tacatataaa cctcctgtga tttcttt
//
LOCUS       KCOD01002204             666 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 245370pyr ultra-conserved element
            locus uce-5724, sequence.
ACCESSION   KCOD01002204
VERSION     KCOD01002204.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 666)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 666)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..666
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="245370pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>666
                     /note="ultra-conserved element locus uce-5724"
BASE COUNT          199 a          120 c          128 g          219 t
ORIGIN      
        1 agaaattctt atccaggaat actcctggga agattattaa aatactactg acatcggcta
       61 caaagatcta cttgtgcata tttctttaaa ggggggttaa tacacagtat taccatagct
      121 aggccctatt atactattgt aatcataagc aagaacggtg attaacgatg gcaatttatt
      181 gtatctgacg aggggagaaa ataggagatg ttgtcgttat cataaatcat atcataaata
      241 accaaagaga agcactcaga aagcttgtgt ggtgtcagca gcaagccctt tcaggcacgt
      301 tagcccagga tgtagccata gaaaccccaa agtcatattg ttatcttagt cttgctgcag
      361 ttatgtgata caacagtatt aacatataga ttaggccatt tataatacta ggtgtcattt
      421 caggttggct tgcttatata gcattttagt ttttattgtg ccgaatgtta gggaaacgct
      481 gcatttttac aggtcagtat agagccattt ataatgtatc agcttcatac ctctgtcagt
      541 cttgctaatg tactctgtta ttgattggtt gtactccatg aattgtcatt gcctaattac
      601 cttgtctttg ctaataattt taaaaatgtt ccctctgcgc ctgcacacat acttcgggac
      661 aagttc
//
LOCUS       KCOD01002205             419 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 245479pyr ultra-conserved element
            locus uce-33, sequence.
ACCESSION   KCOD01002205
VERSION     KCOD01002205.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 419)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 419)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="245479pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>419
                     /note="ultra-conserved element locus uce-33"
BASE COUNT          127 a           79 c           76 g          137 t
ORIGIN      
        1 tttttcaata ttcaggccaa tgtattagca acaaaatgtg gctcacacac ctatgagaac
       61 agttttaatg aagaatttta ttcaagctta tttcgttact tttcttggta gtgtgaactg
      121 tgaattaagt tgaatacaaa aggttttcac tgcactgaat tacctgtttc accttgaaaa
      181 gccacatgaa atgaagctct taaagccttt tgaaaatgac ctttttcctc agcaatgatt
      241 tatctttccc ctcgaaaatc ccttttacaa aagggagtat gattaaagga agccaagcag
      301 cacaaacact cggtgaagat cctgcttatc tggaactcac ttgacaatgt atgttttggg
      361 ggtcgggaat gctgcaggtt caagggataa ttctgccttt caagcacttc aatttattt
//
LOCUS       KCOD01002206             281 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 245583pyr ultra-conserved element
            locus uce-3454, sequence.
ACCESSION   KCOD01002206
VERSION     KCOD01002206.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 281)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 281)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..281
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="245583pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>281
                     /note="ultra-conserved element locus uce-3454"
BASE COUNT           99 a           52 c           36 g           94 t
ORIGIN      
        1 gacctagaaa agtctttgaa aattgtgacg atacatcttt catattacca aaatgacact
       61 gttatttaaa gccctgaaac tgctctttga attctatctc aatatttaac caataatatt
      121 taaagatgtg cacatgaagc aagtatctta ccccagtaca cttttagata tcaatcatgc
      181 tgtattaatt gaaaggattt ggtctaatct cataaagaaa caggcaaact cttggctttt
      241 ctctaaagta aaaatatatc actcatgtca tccattactg t
//
LOCUS       KCOD01002207             802 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 245688pyr ultra-conserved element
            locus uce-2080, sequence.
ACCESSION   KCOD01002207
VERSION     KCOD01002207.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 802)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 802)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..802
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="245688pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>802
                     /note="ultra-conserved element locus uce-2080"
BASE COUNT          253 a          151 c          148 g          250 t
ORIGIN      
        1 aattatatac aaagaagcaa ttatggttgt tctgagagaa atggaaattt acactttgta
       61 aatatagacc tgcttttcct aaaaggcatt tatttctgca gtttttggat ggatgttggt
      121 gtatgtttac ctgtctgtgc agaataaaat gaaaaactgt gcctttgtat accctgcctg
      181 tgtagttgta tgtgagagtg tgtaataatt catagtccca taagctcttg gtggacattg
      241 ctgcctcagt cactcagccc ccaccatgaa agtcccctaa caaacaggat taaaattcac
      301 tcctttcaac catcccaggc atttattcct tccttttcat tgagctacat ttgtctgatt
      361 taacaagata agatttgagt gctgatgcag cccgttgtta atgcagcagc cgcatccacc
      421 ataccatcga cactatgcat cagaaggatg cataaatcag gtattcaaaa aaaattagat
      481 atgcagcaca ccagttttat agtcccagcc tcagaaattg aaatggccca gattaatgta
      541 ttatatctta cacactgtcc gagtgaatca actttaatat attgaacaga ttcgcagaac
      601 aagactttgt tatctaagga gcacttggaa gaaggaattg acctgaggat ttgatttggt
      661 tcaggtagtt catgttgtac agcagcattt gaatagtttc acataaaaat aaaatttgta
      721 tcagaaatat ttcacatcat tctgggcttg ttcgtattgc agctctgcag aatattacag
      781 aaacaatgtc cagcaaaaag at
//
LOCUS       KCOD01002208             799 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 245799pyr ultra-conserved element
            locus uce-4968, sequence.
ACCESSION   KCOD01002208
VERSION     KCOD01002208.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 799)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 799)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..799
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="245799pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>799
                     /note="ultra-conserved element locus uce-4968"
BASE COUNT          204 a          157 c          184 g          254 t
ORIGIN      
        1 acaaagggac cgatggggtt ggaaactggg tgctgccatt tggaacgggc tcacagactt
       61 ccttgtggta ctgtgagctg gtgtatggca ttagctttcc acagtacgac ttacttcaga
      121 tagcactgca atacccatct gaatctagtg ataagtacct tcattatatt gtttgcgttt
      181 gcttagaaag aaaacctttt tctttctagc cacagattag gcaacagaaa gaccaatttg
      241 tagagcttgt aaatgccact tgttaatcat atgcagtaca attattaatt ggatgtatta
      301 agtcaactgt aattgaaatt tgcccttttg ttacctgggc atgaattatt tttgaaatgt
      361 tgtcattacc tgccctgctg tgaggtttat ctcttctgtt catcctaatt aaataaaaca
      421 tactgttgtt tgctggtctc gtgttgaagt gaattacctg cctgaaggct cgcgctggtg
      481 tcggctcgct tcttgttgca gaagcagccg ttgactaaca cagttacttt tagattttca
      541 tttcaaaggg ctcagtttgt gcagtgtgac aggtgaatgg tgaatgcttt acaggacttt
      601 caagagctga acaaacagta aaggacttat tgctactgca gccgtgtggc aagtacaaat
      661 gcaaggcagc ctttgtggca agtgtttcct ttgctggaca gaggcgactc aggagacctg
      721 aaggactcac ttgggtatgc tggaggtgaa ataatctcag tcgtgatctc atttaaaccc
      781 accctacctg tgtgttctc
//
LOCUS       KCOD01002209             542 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 245909pyr ultra-conserved element
            locus uce-5080, sequence.
ACCESSION   KCOD01002209
VERSION     KCOD01002209.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 542)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 542)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..542
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="245909pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>542
                     /note="ultra-conserved element locus uce-5080"
BASE COUNT          158 a           92 c           93 g          199 t
ORIGIN      
        1 tgatgatgtc ctcacagcat aggtatttaa tggtttgccc atgtgtatat gattgtgaat
       61 ttcgtgataa atttaagatt gaaagaaaca ttattctatg gcattgtcta ataaactgta
      121 taataaatta actgagattt aaaggcattt ttaaatcatt cacttaagca tttaaattat
      181 agttacaggc tagatgactt tctatgcatg tgaactctat tattctgtca gactgaccag
      241 tggtcttgac tgttcaaagg tcagtggtca cagttgtcct gaattaccag tccttttttc
      301 atgaggaccc tctgctgcgt tgcatgctgt aatcttctta atggcttcat tccaatattc
      361 acacataata ttttagattt attgactgtt agaaatacta ccatgccagt agcagttccg
      421 ctactcctaa ggtatttaaa attggaagaa taaatcaggg caagactttc aggaatcctt
      481 tgttttctta gacgttcttc tgacaagaaa gcttgttttt acatttcatc atttcactgt
      541 ga
//
LOCUS       KCOD01002210             806 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 246017pyr ultra-conserved element
            locus uce-19, sequence.
ACCESSION   KCOD01002210
VERSION     KCOD01002210.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 806)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 806)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..806
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="246017pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>806
                     /note="ultra-conserved element locus uce-19"
BASE COUNT          281 a          145 c          149 g          231 t
ORIGIN      
        1 aaaagcccag atggagactg aaagatttgt gtatgtagct cctagatgta actttctcat
       61 atttcctttc ccactagcca tgaagtcaaa aatgagcagg gtcacagtgc taacagagaa
      121 gagagtttaa agagttaaag aagtaatact atttaaacag ggttgcagaa ctcctattaa
      181 aaatggcagt actataaatg ttctagtatt gtcaggaatg ttctgttgga tgacactata
      241 ctgtgatttg tacacacagc ggaccagagc tgatgggtga atgaaatgat ccataaccct
      301 cactgacaca tttagagcag ttcagctgca cacagagaac agtccatcat ttgcaccctt
      361 ctgtgaaagc tggctttacc aagtgtttca atgaaatatg tgcaacttcc catttaaatt
      421 agtaccacat gaaccatgaa gagcaccaca ggtatctgtt gtagtaccag cctaatgcaa
      481 aagtggcctg tcttgtaatg ctctaacagg aaagacatac aaccattcat ctgtaacata
      541 ttaaaaccag aagaaataaa ttactctata gatgaagaat tattgcttgt ggagagaatg
      601 tgcaaaggta gttctaaaaa gcagctttta ctaaaaaatt attgcaacag catttgaatt
      661 cctaatgcgt attaaaccta gttcgcctaa tcataaatca tcatttttaa atcaagaaaa
      721 tctgcttgaa actttttaaa ggtttatttt actagttcag aactatttta gcattaccac
      781 tgagggaagc acagtaggag taacta
//
LOCUS       KCOD01002211             513 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 246131pyr ultra-conserved element
            locus uce-3402, sequence.
ACCESSION   KCOD01002211
VERSION     KCOD01002211.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 513)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 513)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..513
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="246131pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>513
                     /note="ultra-conserved element locus uce-3402"
BASE COUNT          168 a           96 c           93 g          156 t
ORIGIN      
        1 aaaagagatt aatcaaaaca agcaaattag tattacccat cttagatgtt ctttaatgca
       61 aagcaaatag ctcttgccct ttatgcacat gctcctacag taactaatgt acagtagcca
      121 tcaacaaatt acgacttgtg acacttttgc tgctgcaata ttaagcccaa agtcctatgg
      181 agaaaatata tggtttttat taccaaattg ttcttgttta caattctaat atcctcttca
      241 ttatctactt ttccagacat tttaggcagt tctgaagacc tggggcagca ctagtcctgt
      301 cataaagaga aattaatgtt gttaaagatg gcctagctgc cctctgggac agctgaagat
      361 gtgaaaatat aaggttctgt tttaaagatg aaaatgatta aaggcacagg caccttgctc
      421 ttagtgcagc cactaaaact tttaataaaa tacttcagca ggctgcttta cttcttccac
      481 tgtaagtctt aaggagagag aggggaagga aga
//
LOCUS       KCOD01002212             703 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 246242pyr ultra-conserved element
            locus uce-4038, sequence.
ACCESSION   KCOD01002212
VERSION     KCOD01002212.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 703)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 703)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..703
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="246242pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>703
                     /note="ultra-conserved element locus uce-4038"
BASE COUNT          229 a          119 c          126 g          229 t
ORIGIN      
        1 tgaaaggtta atagaagacc ataattttca gacatacctc tttcgattag ctgctcagga
       61 atttccttaa aaagtgtaaa ttgttctaca ccaaaactgg agactgagtc caatttgtgc
      121 ataaattgga attgtctttc taatagactc tttggaaggg ggttgccttc aaggtaatga
      181 tttaaacata aactgaccct tgatgaggga gctggagttt cagtttaatg tgtttctgca
      241 gtgttccttt gccttcagtg ccttcaaatt ccacacaaat aattccttca taacaagtgc
      301 cttttcagaa gatgtatgct gctgacagtt aatataaaat tattgcccct gaatgcattt
      361 tagtaattac ttcccagaga actgtctttg tgttagaaga catttcacac tttagtaaca
      421 taagtgtttg gggagagcat gagtaataat tacaggcagt ctttcagtga aaataaacct
      481 aaaaattatg ctaatgttaa agttggttag agacagtgag gaatttattc atcacattat
      541 gcctgtctct atattttcca agtttaataa cccttcagta actaaacttc cataaagaat
      601 agagaagctg ctttctaatt tttaagcaat aatgaaaagt gacatgctac cagagacaga
      661 ataaagaaac ttaatctgaa tgctcctgta ggaaattcct gct
//
LOCUS       KCOD01002213             386 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 246354pyr ultra-conserved element
            locus uce-5243, sequence.
ACCESSION   KCOD01002213
VERSION     KCOD01002213.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 386)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 386)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..386
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="246354pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>386
                     /note="ultra-conserved element locus uce-5243"
BASE COUNT          128 a           69 c           80 g          109 t
ORIGIN      
        1 aaagagagaa aatgaaatcc agatttgtaa ttcctaacag gagaaattcg atcctttcca
       61 atgtttaagt aatatttcct gtaaaacata cgaggccatc tgcagagctg tttccagaca
      121 cattttgaag tggcaagggc aactgaaaga gacccgaatg gaggctggca tttcacctct
      181 gggagatgga gcattaaagg tttcgaaaag ctagttctac aattttacaa agtattcaac
      241 cactgcatag ttcataattt gtttaattta cctacctttt ataggtatgg ggaggggaaa
      301 tccgctctgt aagagacagt ataaaaacca agacagctgt ctaatgtaca gctatcaaga
      361 atgcttcatg atttcagctg actgtt
//
LOCUS       KCOD01002214             699 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 246465pyr ultra-conserved element
            locus uce-6856, sequence.
ACCESSION   KCOD01002214
VERSION     KCOD01002214.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 699)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 699)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="246465pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>699
                     /note="ultra-conserved element locus uce-6856"
BASE COUNT          214 a          134 c          147 g          204 t
ORIGIN      
        1 ggtgttttgg aagcacaaca ccttagcact tgatggatca gtaatcttct ataatcagaa
       61 ataggtataa ttgtgcatct ctggcttaac tgtcgaagga ttaagccaca tcctgatcaa
      121 tgcaagtgcc ttcctagaaa acaggcaggg aaagatttcc tgtagttagc agcaatgagg
      181 gagaggaact ttaaaaacaa ctctctgttt gataactaca gaaatctagc taagtcttag
      241 ggatttagcc agggaacata ttggttccag cagactatgg taaagttaat taaggatgat
      301 taatggagca ttttccttcc aatgatatct gtgacagaac aaagctgtct gaggcttgtc
      361 aagcagaatt tgagttgaat gagtatttat gtgatcaaat ctgaagggct gcctcttgac
      421 agagcaagga ttcatcaatc aattgcgctg gcttgcagtg gtgggaaatt ggtctatcag
      481 catagctctg ctcccatccc ccattttttc attcaatcat ccctcaggct acaatgcatc
      541 tttagctttt acctctgacc accttaaggg ctatcagaga aaagtaaaag caagagctaa
      601 aacatctatt atagtggtta tttctcagct gtactcatag aattgatttc ttttaagcaa
      661 aggcccaggc actgtaaagt gatacaagcc tgttcaatg
//
LOCUS       KCOD01002215             732 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 246577pyr ultra-conserved element
            locus uce-3688, sequence.
ACCESSION   KCOD01002215
VERSION     KCOD01002215.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 732)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 732)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..732
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="246577pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>732
                     /note="ultra-conserved element locus uce-3688"
BASE COUNT          208 a          159 c          133 g          232 t
ORIGIN      
        1 tccatcccct gggctttgaa gagatgtgga gtggtaacct gtacacacgt gtgggtttca
       61 tagcaaaggg tttgtcaaca ggattcaagg tcaatatata tcaacatgag acctggctaa
      121 tttactttca ttcatgcact tggagttaag cagcaaagaa ggggttaacc ataaagtatt
      181 tcaccttgaa ccttgcactc tctttatcta gcacaccata ataaaagatc aagagttcct
      241 gcttattatc ttatttttcc tccttgttcc actaggctag ggcccagact agttatggat
      301 taacactgtg atcaatagta agcttgctgt ctcgctctca gcaggggaaa atgaactcaa
      361 aatgcagtca aactcttatt gatcaaggat ataggtctca ctttcattac ctctgtctcc
      421 tgataaccca catataatgt gatgagttgc taatctctct gattttcaat ggacccttca
      481 cccctcctgt ctgcacagta gagcttttat ttttgcctct tctgtgtaat gcttgtagca
      541 ttaactctca ctctattacc accatgcctg gtcaatcaag actcataaaa ggacttttaa
      601 atagaattgg gccaactgtg ttatgatttt tatctccaag caaatgagtt acccttcaat
      661 aacaaagagt gggtactgga ctacttgaac ccatctcaga agatgtttat gtggatgctt
      721 gcattaaaaa ca
//
LOCUS       KCOD01002216             729 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 246688pyr ultra-conserved element
            locus uce-3122, sequence.
ACCESSION   KCOD01002216
VERSION     KCOD01002216.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 729)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 729)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..729
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="246688pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>729
                     /note="ultra-conserved element locus uce-3122"
BASE COUNT          222 a          148 c          124 g          235 t
ORIGIN      
        1 cttcaacttt ctctttaacc taatctagtc atctgtgatc tgctaaacgc tcaataattt
       61 caatttggca gcaatagttt tccatgtagc aagcacatgc aagatgaatt agtgaagaag
      121 attttaggag cttgtgaaaa aagctgaccc atctaaaact gcacatcctt tcagaacaca
      181 gtcccaaact gtagtgatgt cccaaatcac aggattaatg tgtctatgga cagacctctt
      241 atgcctccag aatgaagtac tccttgctaa tttctcttca agacaccagc ttaattgcat
      301 tttaaacaaa tgggctgctt tgctggccaa cttttaaatg agataacagc aatgttcact
      361 ctccagcagt gatgagtgcc ttgcagtaga ttcaaaactc tgttcaataa caggtttaat
      421 ctcacaccag cagatttact gcagaataaa ctgccactga gctcataatt agtaaaaccc
      481 caacctacta aatattattt tccaaagcag caggctatgt tttagtggaa aatttcagtc
      541 cttttctttg tatgttttat tgattttatg tatgatattg ggaattcatg ctatgattta
      601 agataatggt ctttatcgat cacttaagca gttgtttagc tacacagtag caaaatgatg
      661 ctcccattca tggaatatgt gatactgaca gcggggagac cacagtgctt cccttcttaa
      721 tgtttattt
//
LOCUS       KCOD01002217             648 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 246801pyr ultra-conserved element
            locus uce-3011, sequence.
ACCESSION   KCOD01002217
VERSION     KCOD01002217.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 648)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="246801pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>648
                     /note="ultra-conserved element locus uce-3011"
BASE COUNT          200 a          120 c          115 g          213 t
ORIGIN      
        1 tatttcattt tttaaatggg agcatcacct tttgaaaagc tagagtgtct cagtcatcag
       61 acgagctgtg gttgttaagg gatgcaggcc cttatccaga tattttaaag taaatatttt
      121 atctagggaa aagtatggaa ttcataattt gatggcgcaa aaggccaata atatgtgaca
      181 gcatgatctc attagaaaaa ggaattttag cccagtgtga tctgagtgac tagttccaaa
      241 atgtgcagtg aattttatag ttcgtctggc tggctgagtt ccatgctcct gcattcccca
      301 atggtaaata tttgcaacag atttcacatt gtaacacaag ggctcctttc acagagcagg
      361 tcatgtaaca ctgcaaaaaa atcaaggcca gggcaaataa acaaaaagtc atgccaagtt
      421 caccactccc aaagattcct aagcctggct gtgcatacaa acttcacttg ctactcatca
      481 acatcagcag tttatggcca gatggttata aatttacatt ctataaaatt ttagaggatg
      541 ttattttttc cactcagttt gttaattaag ttttggtctt tttatttcct caaacataac
      601 agttcaattt tttattaatg atacagtatc atattctttc ctgtctct
//
LOCUS       KCOD01002218             516 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 246907pyr ultra-conserved element
            locus uce-7507, sequence.
ACCESSION   KCOD01002218
VERSION     KCOD01002218.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 516)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 516)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="246907pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>516
                     /note="ultra-conserved element locus uce-7507"
BASE COUNT          174 a           74 c           97 g          171 t
ORIGIN      
        1 tattttagca taggaattaa ttgagcacac tggccatgca ctgattcttg tctgtcagct
       61 ttgggttacg tatgcatttt aacatttaac ttcacggcat acaaaatcca gaaaagaaaa
      121 gtgttcataa aaatatacag ggcattactt atttatatgt aaaaccttta ttctattttg
      181 ttattttaga ttaaatcccg tttcaattct attctctcag ggaagcacta acagtttgag
      241 ctcagcgtga aagccatcaa acacttgagc tgaaatttag attgggcaat tttgcctggt
      301 gaagtagaaa aggacatgtg gaatggcaga gaacagaatg gtttatggaa aggcagatgt
      361 tttaataact tgttgtctag tgggagcctc aaatatctaa atttaaacac tgcaatatat
      421 taaagtgcat tgctgtcggg tatagtcctt atgattcaaa gtaaatgtgc atatttaaat
      481 aaaacatgta ttttacaaat tagaattaat tggaag
//
LOCUS       KCOD01002219             822 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 247018pyr ultra-conserved element
            locus uce-6638, sequence.
ACCESSION   KCOD01002219
VERSION     KCOD01002219.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 822)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 822)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..822
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="247018pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>822
                     /note="ultra-conserved element locus uce-6638"
BASE COUNT          215 a          174 c          171 g          262 t
ORIGIN      
        1 gacatcgcaa atctcccatc tctgctttgt tggtctatat gcatgaataa ttttcccagt
       61 gcttgtttgt agctgagcgg gagaaagaga gaattaccgc tgcacaatct cttgttgtcg
      121 gtgatcagca ttccgatggt ctgagctggc ttacaacagt gtaaagacat cagtggcatg
      181 tgttataata tattgagcat tgtactcctg aagaacgcac gaaagaaaga acattgttct
      241 actagggagc aattcattgg gtttttccca gagactcttg ggtcaagttt ttataggcct
      301 atttgatttt caaattcttt ttcccccttt ttcctctcag tgagccatag tgtccaaact
      361 tgtctacatt tacttcccat gttttgtgca tggtagatgt cctttaaaaa gagtatctca
      421 aataagtctt tattcttgtt ttgttggctc ttattctgtg ttttcatgaa ctctggccct
      481 ggccatggca actgcaagaa aaatgttaac attgattgac aggattaaga aagcctccat
      541 gcctatccgc atttcaaaca ctttgggaac aatggtgttt ggtgtgattg aattaatgag
      601 atatcgtgga ctgtcaaaag agcacacata ctttacataa acctgattat ctttgcatgg
      661 cagaaatgaa aaaaaggagg gaacagaggt ttggctttca ctcatacctc caaaggagcc
      721 atcaaagtgt gtgtgccctg gctcagagag tgatgtgccc gctcaactgg cctgccctcc
      781 ctttctctcc acatactgcc tggctctgct tagcatacat ca
//
LOCUS       KCOD01002220             468 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 247129pyr ultra-conserved element
            locus uce-4980, sequence.
ACCESSION   KCOD01002220
VERSION     KCOD01002220.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 468)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 468)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..468
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="247129pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>468
                     /note="ultra-conserved element locus uce-4980"
BASE COUNT          137 a           90 c          104 g          137 t
ORIGIN      
        1 tcactgctcc ctgtcatgtg tccgataatt aaaatctgac tgatttactg actggcatca
       61 accatcacag ctcaagagtt agaagatgtt catccttccc aaggctaaat ttacttggtg
      121 aaaaggggcc gcttgcttcc agcctgagct gtcattcagc tgccgtggaa accataaaga
      181 tagctaacag agccccagcc agcagtcttt agtttatttt attctaatat ttattgccac
      241 ccagaaaatg aacataatac agacaagtta gtgagagcac tgcactagtg atttgtgagg
      301 ctggtgtgga gtgagagcaa aacagtcctg cagtattaaa ataaaataga acagtggtgt
      361 ttcccaaaag tatggcaggg ctgtagctgt gtttatttta accctaatgg ggtacaattt
      421 attattacat tttaagtaga tgcactcttg gagaaggctg gttgggtt
//
LOCUS       KCOD01002221             268 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 247230pyr ultra-conserved element
            locus uce-652, sequence.
ACCESSION   KCOD01002221
VERSION     KCOD01002221.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 268)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 268)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..268
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="247230pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>268
                     /note="ultra-conserved element locus uce-652"
BASE COUNT           90 a           43 c           44 g           91 t
ORIGIN      
        1 tttttaattt acagattttg cagtgtttct gtcacttcaa cttcttgttc cttattaaga
       61 cttcagagat acaaaccagt agctcagtaa ttgctttctt gaatctgcct ttaataatta
      121 catttagtaa agctgtatcg aaaattagaa aggcagagac taatggaaaa ctagattttt
      181 cactgaatta gaaagcaaga caatccatat attgacaaca tttcaagttg aaacagatca
      241 ggaaaactgt tttggactgt ctgtgcag
//
LOCUS       KCOD01002222             734 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 247336pyr ultra-conserved element
            locus uce-1602, sequence.
ACCESSION   KCOD01002222
VERSION     KCOD01002222.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 734)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 734)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..734
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="247336pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>734
                     /note="ultra-conserved element locus uce-1602"
BASE COUNT          232 a          148 c          119 g          235 t
ORIGIN      
        1 gaaaccccca tcatatgttt ataaatacac taacattagc attttacttc ctcataaatc
       61 tgcaccaaac attcaggcac aagatagaaa gccctgtaaa acaatgatat attctctgct
      121 tgcaagactt gcctagtggc ccattcattt ttaccgctgt tcttcaaaca ttactttctt
      181 cactcatgcc ccctcattta aaatccattt taatttaaag atgttcgatg cagtcctagt
      241 ggtacattta ctcatcctgg ttatacatca tggagcaggg aaaagaaaat tgtttaatct
      301 agagatacgg ttcactgtgg tcaccactga acagtggagt aattaccaga tcagctccgc
      361 taaaaatgca ctcagggtgt tctgtgacct atcatcttct aatctgcata gtgaagtata
      421 gcttcataac tataaattgc tgacttaatt aaaaccagga cctttctgtc atttaattac
      481 agggagaaag gttattgctt aaatgcaatt ttccaaatgt gatttcttaa cagttattaa
      541 ctgcttcacc atcatttatt gtttcagatt tttcaatttg aaaatagtcc ctgtgacaga
      601 agtaatgact tcatgaaaaa ctcaatctag atggagctga gcagacccat ttgtttcttg
      661 taagtggagc agacagaaaa cttgaaaatg tcacaggagg atcctgtgat tactccactt
      721 tacaggagta atta
//
LOCUS       KCOD01002223             713 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 247447pyr ultra-conserved element
            locus uce-7755, sequence.
ACCESSION   KCOD01002223
VERSION     KCOD01002223.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 713)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 713)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..713
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="247447pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>713
                     /note="ultra-conserved element locus uce-7755"
BASE COUNT          191 a          157 c          154 g          211 t
ORIGIN      
        1 gaaaacttaa caggcaacaa taaaaaaagg ttaaaaacaa cttttccttt tagtagtcct
       61 ctggtagtaa agatagaaca gcttccacat ttgagaagta atctgtcttg gtccttttta
      121 gtatctgctt ctgcctccac ctctatcgga tctgcttcca ccacggccac cacctctggg
      181 tgccccacgg cttgaactac tgtaagaatc ccgaggaggt ggatagcccc tttccatgga
      241 tgggggaaga cccctgtctt gtcttccaac acgatcacgg ccacttgagt agacatcact
      301 tctgctgctt gagtaacttt ctcggcttcc atatccatct cgtgtgctgc cgtaatcatc
      361 atagcgactg cttccaccat atgatggcgg gggccctcga gcaggtggag cactacgtga
      421 gttacctgca gggtcaatgg tcaggtaata tggcaacacc ataagttata tagaacaatt
      481 tcaaatctga atttacagaa ttgctgaaat gtttactatc tgccacacta atggtattta
      541 aagtgggggt gagtggattt gaaggaatga agacggtttg tttattcagg caggctcttt
      601 aactgggtat tccagaacag cttgttattt tagagaagaa actcatattt tccagagata
      661 gttgtcattc tgaactgtag actttgcttc tttagcttat agctttaaca aga
//
LOCUS       KCOD01002224             302 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 247549pyr ultra-conserved element
            locus uce-3195, sequence.
ACCESSION   KCOD01002224
VERSION     KCOD01002224.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 302)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 302)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..302
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="247549pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>302
                     /note="ultra-conserved element locus uce-3195"
BASE COUNT           91 a           49 c           64 g           98 t
ORIGIN      
        1 tgaaccctca ttcttcagta gaaatttact ttgctttcta cagtaccaaa ggtgggtgat
       61 ctgaagatct agtaagaatg acacaccttt tttatttaaa tattattgct ttttaggcac
      121 tgaattttgg agatatgccg aagtacttgt gggagatttg ggtacctcac aaaccatggg
      181 tggtaagata caagatccac tgcaataaat aaaataagca tttaatattt ttgggtcctg
      241 ctgtcattga attcaatgga ccaaactagg gctcgtaaga agtgcggtac tgcatgtgta
      301 tg
//
LOCUS       KCOD01002225             797 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 247654pyr ultra-conserved element
            locus uce-7012, sequence.
ACCESSION   KCOD01002225
VERSION     KCOD01002225.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 797)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 797)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..797
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="247654pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>797
                     /note="ultra-conserved element locus uce-7012"
BASE COUNT          265 a          126 c          146 g          260 t
ORIGIN      
        1 agaaaaatag taaaaatatt ccctctagaa atgaagggaa atgtggaact ttgtggtaag
       61 aagctagctt gtccacgttg ttatgaatag agaatagtgt atacagtttt tcatatctga
      121 cttgcaacag aagattggaa catacagaaa ttaatgttac tgaattattt aatagtaact
      181 caaacacatg aaaagaagaa ttaaaggaac aaaatactaa aaaggcattt taaatgaaat
      241 cagaagcttc aacaaatata tttttccctt gcagtcaaaa aagtaattat caaaattgtt
      301 cagaatatgt tgccaattac tctgctccgt aactgctaac tttctcagtt cttctcttgc
      361 ctttgctggg ctctctgtca ctggaaacat cttaaaccaa tttaaagtgc tacacctgaa
      421 taaacatgtt gtaaaagtgt ttatgtattg aagtgggtca gttcaaggta tggtatttgg
      481 ctggaacttc taatttctct ttttactgca aaagggctgc cagaaggagg aagtctgagc
      541 tgaattaata catttgttac agtggaagta gaatggaaac tactttaacc acaaatcaaa
      601 ctgcctcttt catttacgcc agtgatagag tttttttaag aaatatagac tctggcatgc
      661 agccactgta agttagtgtt tgaaaaggaa acctatatgc ttatttctat aaggtttact
      721 cctatgcttg tttgcaagtt ctttttgatt gagttaacag cattatacgt ttgtgaggca
      781 gatgctcctt cattgcc
//
LOCUS       KCOD01002226             674 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 247764pyr ultra-conserved element
            locus uce-7145, sequence.
ACCESSION   KCOD01002226
VERSION     KCOD01002226.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 674)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="247764pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>674
                     /note="ultra-conserved element locus uce-7145"
BASE COUNT          207 a          117 c          135 g          215 t
ORIGIN      
        1 attcataata tacagtttat tgttgataaa gtaatggctg aatggtgggc tggcccatag
       61 ctaaagactg atttgtaaat catctgaaat ttgttggcat ctgttttttg tggaatttat
      121 acggatggag aggaatctga ggtatcccct ttacaactca actcatagat attattgaga
      181 attcatattg cttttattat ttggtaaaaa tggacctaat gcttgttggc tttaaaacac
      241 ctactagtgc tgctttctct ctaaaatata agacaaggcc gaagcttaaa ttaaaatcct
      301 caggttctta tctctttccc acaggaaagc aaatctgtgt tgaaaaccgt aaaattaaga
      361 ggagagcaag gatagcataa tttagcaaaa attcatggca ccagattctg agctatatga
      421 ctggagggat aggtcagaca ttaagaagat actgcctgct aaggcaagtt ccttaaggtg
      481 gtgctctgga aacaagggaa acggaaaatg ctgcactggt tcccgtttgc ttcctttcct
      541 cttactggcc ttaacaataa attgagttgt ccatttaata acccatctgc ttccagaagt
      601 ccagaaaaag gagctatgtc catatctgct ttgtgctagg atttcaatag tgaaattaat
      661 tttattggcc tctt
//
LOCUS       KCOD01002227             615 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 247872pyr ultra-conserved element
            locus uce-2530, sequence.
ACCESSION   KCOD01002227
VERSION     KCOD01002227.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 615)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 615)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="247872pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>615
                     /note="ultra-conserved element locus uce-2530"
BASE COUNT          203 a          158 c           86 g          168 t
ORIGIN      
        1 cccaccagga aaggcatatt cccagctccc acactatttc tgtttaacat gagcatatca
       61 tgatcaacaa ctgtgatgtc taatgactca ctctctattt tatatgatga tccacgccaa
      121 tattaattat gataggcaat aagcaaggcc cacatacatc tcccttcact tcaaaccaca
      181 ctgacaatcc cctccagtgc ctgcatccat aagcctttgt tcccctgcag atctccctta
      241 acagcccaat aatctttcct catcctctat agagttccaa aactcccaga caccatctgg
      301 ccacattgag ttgtatgtct acttaattga catgcaaact aaatgcaaac tacaaacaga
      361 atttaacagc acatcaccag ttttaagaca caatccgtca aacatttcag aggactatat
      421 atatcctgca cttgcaaatc attgggcata atgtctgaca tccagtaaac cctttataga
      481 cattcattta agagcaaaga acccagtatg cctgtaagag aaatccaggt attgacttat
      541 gcaagaatat aaaatgaagg gataaatttg agtcctagga cctggtgatt tttaactact
      601 gacacccaaa atgct
//
LOCUS       KCOD01002228             571 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 247978pyr ultra-conserved element
            locus uce-5225, sequence.
ACCESSION   KCOD01002228
VERSION     KCOD01002228.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 571)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 571)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="247978pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>571
                     /note="ultra-conserved element locus uce-5225"
BASE COUNT          167 a          104 c          124 g          176 t
ORIGIN      
        1 caggctctga gatttcaggt ctgcagagtg aggatggaaa tcttccagct gataagaaaa
       61 gagttgtgtg agtaagaaag agaaggagct gttcatcaaa ctcactgtac agcacctcca
      121 gccattgcag ttggttgggg gaggctttag ggggaggagg aggagcggga gaagtattag
      181 ggctgtgagc cactattcat ttacaaacta taattaattt gatgtttaga ttaatttctg
      241 atgcactctc aaaggtgcac tgaaagcatt tttcctttat tataatgttg attgcttatt
      301 ggggagataa atctaactgt cagttatgca ctgacttacc aaaactttca gaccaagcaa
      361 gcatgtatgc ataaggaaca gctgtttgca gctctctagt taaagggaca gctctgtctt
      421 ttcccaataa ctcacattaa agaaaatcta tacattgtac acggggactt ctgctttctt
      481 ttgtagctca acaatttatt agacaagaat atgttagcag aatctgtctt ctatttatct
      541 ggctgtccac tatcactatt ctatccatct c
//
LOCUS       KCOD01002229             581 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 248083pyr ultra-conserved element
            locus uce-4824, sequence.
ACCESSION   KCOD01002229
VERSION     KCOD01002229.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 581)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 581)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..581
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="248083pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>581
                     /note="ultra-conserved element locus uce-4824"
BASE COUNT          197 a          114 c          105 g          165 t
ORIGIN      
        1 aaaaaagcca caccacagat gctcaagtgt tcattaccca aatctttgca ggaagcaatt
       61 gaatagaatt acctacaaag agaatgtggc attttaacat tatacaatca tgttcctcat
      121 ggcaggtgac atctatctcc ttgacggaga ctgtatctca aaaatacatt caccgagctg
      181 tctataaatt caaataaacc ctgcaattta attttcaaca tatccatatg tttgagaatc
      241 aagctttcag cagctgagta cagtttgtgt tgatactact gtacccagtg aataaggagg
      301 aaacaatgca gtgccactgc agctatagcc aggtttagca ggggtctgca gggagaaagg
      361 attcgtccca gtgttctggg tctaattcaa gatccagtca atagaatttc caagaagttc
      421 atcctttctt gtttggtcaa acgcaacctt tttcatggtt tagaggaact atgtcattac
      481 ttagttagaa acacaaagaa ccaaatgtgt cattgtgcac catggaaatg cagccaagaa
      541 tcttttaaga taaaataaaa cccttaattc tttaagaaaa a
//
LOCUS       KCOD01002230             618 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 248193pyr ultra-conserved element
            locus uce-5852, sequence.
ACCESSION   KCOD01002230
VERSION     KCOD01002230.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 618)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 618)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="248193pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>618
                     /note="ultra-conserved element locus uce-5852"
BASE COUNT          187 a          116 c           97 g          218 t
ORIGIN      
        1 attaattctt gcgtgcatcc aacataaaga aaagtcacac gctcttcttt ctttttaaaa
       61 ttttgttcca ttgtttctgt tgttccagga aggtgtaaat acatcgcacc ctactattac
      121 atgttttaaa aaggtgacct atactttcca tttcaaatgc ggtttcttta atgaaaatat
      181 tttaatgtca gtccatgcaa agcaaatgca tattaatatg cgtttacatc tgtctcatat
      241 taatattcat gcctgaatcc acatccctac acaaagccaa ttttctgacc atctgtgtga
      301 tggctggtgg atgcaatgaa taaattttat ttgtgagggg agtgataaat catgtatctt
      361 ctgtttttca gccacaatct ctcctcttag gtgctaaaat gttttcattg tggttgagaa
      421 ataccaaact gattaacccc ttagcacatc aagtagcttc atttgtcaaa gtcctcaaaa
      481 atcatgcaag gcactataca actgagaaag tagaactgca gttttaggag gtttaattat
      541 ttacttcttg aattattcct gtctcagaat cacactttat agtagaaaac tcatactgat
      601 tttgaggagt accttagt
//
LOCUS       KCOD01002231             592 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 248412pyr ultra-conserved element
            locus uce-4760, sequence.
ACCESSION   KCOD01002231
VERSION     KCOD01002231.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 592)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 592)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..592
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="248412pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>592
                     /note="ultra-conserved element locus uce-4760"
BASE COUNT          163 a          114 c          123 g          192 t
ORIGIN      
        1 gtggctgaag caggatacct cagtctcttc ttccccacac ttggggttag agattaggta
       61 aaaccaccac tgttctgcac attataaaac ttttagcaag aggctaatga aatgcaaagc
      121 tttctataag gccagcacta gccttcctat caaatcatct gaaatattta tttgccctct
      181 tgaataattg ataggggcat cagctctccc ggtcaattga tttattaagg gactgtttgg
      241 aattaaacag cttaaagata ttagatttag cagcgacctt gcttgttagc atattcattt
      301 acctacggga gatcccatta gatattgtta atacatgacg ttcccagtca cggcctggat
      361 ctcctcaaat tgcattaaca ctgggctgtt tagccacaga ataacaggtt tgattgagtg
      421 cttgggcttg gtgtaattag attttcctag aaaaactatt ttaatgctgc gtgtgttaaa
      481 ctagatatgt catcagcatt actgtaattg gcaaacagga gctttggaga cctggctgtg
      541 tgtgaatgtt tgtgtttatg acttgtcctg ccattgtcat aggtgccata ta
//
LOCUS       KCOD01002232             464 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 248518pyr ultra-conserved element
            locus uce-7962, sequence.
ACCESSION   KCOD01002232
VERSION     KCOD01002232.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 464)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 464)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..464
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="248518pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>464
                     /note="ultra-conserved element locus uce-7962"
BASE COUNT          127 a          115 c           82 g          140 t
ORIGIN      
        1 acccaggcac ccgctcgaac accgttgttt tttccttgcg tgccataaat cagagtgcta
       61 atctttcact gtccggtgag atctctcact gggagggtga taaattgccc tccagcccct
      121 gacagctgct gggaaatcac tcacagcccg agacaaacct ctaaatctgg cattatagag
      181 tgttgaaagg aagaatgtct gtttttataa cctacctcag ttataataaa tatttaaaat
      241 ccacattaac atcctcttat agttacaatc tgccctctat ggaacagtgt ccaacttaga
      301 tttaattagc aactgaacct ttgcagtcca agctcctatt taggctgaag atccaaatct
      361 ccagtgaaat gcttctgttt tcttaaacta cctgcactgt aataaatatt cgccatgtcg
      421 ccaggcagct ctgttggaga cagtgctctt tttgtcttct caaa
//
LOCUS       KCOD01002233             466 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 248627pyr ultra-conserved element
            locus uce-3526, sequence.
ACCESSION   KCOD01002233
VERSION     KCOD01002233.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 466)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 466)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..466
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="248627pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>466
                     /note="ultra-conserved element locus uce-3526"
BASE COUNT          137 a           79 c           97 g          153 t
ORIGIN      
        1 tggcatttaa attcgaacgc acattcattt tcccatttag ccaggtggtc tcttcgggaa
       61 gcagaggtgt aattcctagg taatggcata aaaaaaaatc ctcctcttgc ctatatattt
      121 ttgcagatca acactacata tttaataaaa acaataaaag aagaaactgt gcttaagaat
      181 ttagaaacaa ataattttat tctgtttctg ttcttcattt atagcaccag caacaagtgg
      241 tgcaggctgt ggagcgtgcc aaacaagtga ccatggcaga actgaacgca atcattgggg
      301 tatgtggtct ttccatttta gctctggtag tgtttgtaaa tagcttttct tttttgaact
      361 catttccatc aggtgggcaa aagttgtggg cagtggtgaa gttcagtagc ttgatcttca
      421 tttagcttgc caagaagact aatggggtaa ttaatgtgtt gtatct
//
LOCUS       KCOD01002234             475 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 248733pyr ultra-conserved element
            locus uce-7211, sequence.
ACCESSION   KCOD01002234
VERSION     KCOD01002234.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 475)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 475)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..475
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="248733pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>475
                     /note="ultra-conserved element locus uce-7211"
BASE COUNT          112 a          121 c           95 g          147 t
ORIGIN      
        1 ctgatattgg gatctgctgt tcctattgct tgtgtaagag tgggtctctc tgtcttatta
       61 aatctatttt tcaagctgtc acttaagcag gtctagtgac agagtcggat gtttatgtgg
      121 ccctggacac ttgaactctg gtgttttcaa tcacaacagc accttttgcc agccggtctg
      181 aattaaaaac tccccctgac cttttacccc cagccctctt aaattcatgc tttaaaaaca
      241 gcttaatgag gggtttactg gcccaattgg aagtttttat taaaacctat tagtgagctg
      301 gagtagcctg cctgaaggaa acgattaaga gcagctctgc tcagagctgg cccttagcca
      361 tttccctaaa ctgcttccag acccacgtta accccaacac tgcagcctgc aggaattcat
      421 atcctctgcc ttaatttatg gcttgtctga ttccctcccc agttaggccg gcatt
//
LOCUS       KCOD01002235             532 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 248845pyr ultra-conserved element
            locus uce-3426, sequence.
ACCESSION   KCOD01002235
VERSION     KCOD01002235.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 532)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 532)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="248845pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>532
                     /note="ultra-conserved element locus uce-3426"
BASE COUNT          136 a          110 c          133 g          153 t
ORIGIN      
        1 gggatgctaa attttatact gtccctcatc ttgatccagt gagtacctga accaagccca
       61 gaagaaaaca aaggtatttt ttacgattac ttggaaagag gaaaaggttc aagtgcttct
      121 tgtgaatctg cccgggaacc cttagcagac aggcctgtgt cctttccttt gatgacggta
      181 acaagttcta tgacattgcc actttgagtt cttgcttcat tagattgggt gactgtttat
      241 ttgaaattgt aatgaaatat ttactttata gagctataag gattagcggc gataattgag
      301 tgaggctgat ccggagcttt cagtgtaata gggccccctt gtttgaatac agagcgcggg
      361 gagaatggag gggcgaggga gcgcgtttct gcctgtcact ttccctctac atgttgcttt
      421 ttctcccgga gataagtggg cctaatgctg aacaaatacg ggaaatcggg agccactgag
      481 aatcattcgc ctctcgcttt cccatggcag cgtgatagac gcccgctcaa aa
//
LOCUS       KCOD01002236             597 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 248953pyr ultra-conserved element
            locus uce-5265, sequence.
ACCESSION   KCOD01002236
VERSION     KCOD01002236.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 597)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 597)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..597
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="248953pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>597
                     /note="ultra-conserved element locus uce-5265"
BASE COUNT          154 a          173 c          126 g          144 t
ORIGIN      
        1 agggctcccc agcagcctct ccttcctcac cttccctcct gaagagttta tcattgcatc
       61 atcccaccat ttcgtggtgg caactggtcc agatacatac tcccaccagt tctgtacctc
      121 acagaggaag gtgaagatgc cctgatgttc cttgaggagc ttggcaattg tgaggctgct
      181 ctgcttgatc ccacctagcg ggtcaaagag gaggtcacgg ttgagggtcc ccttcctctc
      241 ctccgtccac acgtcgatct cttcctggtg gtacgcgaag gtgcagttat ccccgtactt
      301 acagtcctgc ttgttaagca tatctacaaa gcaacaaaca gcacacaggc agggcggccc
      361 agtcagaaac taaactctct ctctcccact gcccgcacaa ggaactacag agctaaaaga
      421 aaaagaaagt tcaccttcaa gacattcgag ttaatgaaaa ctataatgtt gctatggggg
      481 aaaccatctc aaaacgcttt aatccagtgc ctggccaggg acagatcatg acttaattaa
      541 ccccgccaac acagattaag ttctcccata ggcccagcag tttttagctt ggctctt
//
LOCUS       KCOD01002237             392 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 249058pyr ultra-conserved element
            locus uce-6239, sequence.
ACCESSION   KCOD01002237
VERSION     KCOD01002237.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 392)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 392)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..392
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="249058pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>392
                     /note="ultra-conserved element locus uce-6239"
BASE COUNT          146 a           46 c          118 g           82 t
ORIGIN      
        1 gatatacact tagagagtga agtaaagaaa aggaaaaaag cagtaatatt ggcaactgtt
       61 gttaggtagt ataaacaata gccagccatt ggcttggagc agaggatcaa gttccaatag
      121 cactcaatag ggagccttcc ttaaaaaatt agaagaagct gggttggagc tggtccatgc
      181 tgggaatggc agaagaagca aaaacaagag taaatgaatg gaaattaagc agcaggaaat
      241 ggggatttgg cacaaggctg gaatttgaaa ctgcagagag gtgtcagtga taaaggttgg
      301 atagagtttc tggccgaatg cagatgtgtt cattgaataa agtacagatg tagaaacagg
      361 gggggctggt ggggagagag gaataaagaa aa
//
LOCUS       KCOD01002238             618 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 249163pyr ultra-conserved element
            locus uce-746, sequence.
ACCESSION   KCOD01002238
VERSION     KCOD01002238.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 618)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 618)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="249163pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>618
                     /note="ultra-conserved element locus uce-746"
BASE COUNT          217 a           96 c           95 g          210 t
ORIGIN      
        1 taaaaggctc atattaaaca ttgtgcaact tcttttaaaa caaaatggtt taaacctact
       61 cacagtagat ataaatgctg tttaaaatat ccaaatggta tggatctgct tgagtgccac
      121 attaaatcaa aataaaaaaa tggtttaaaa tagctaatga attttctgga aaaagatgtg
      181 actagttttc accttgttga gcattttttc actagtgcaa ctttggaatt tttatgagaa
      241 ttttggtacg ttaatgacca cctcgctccg tgctggaagc aataaacaca aagcttttaa
      301 agactttctg acttgactaa ttgaggtcgc tttcgtcaga ggcagaggat gtgtaaccct
      361 taaaacggtc ttcatttgca aaggtaaata aatcaaataa gattttaatc tcacttaagt
      421 tatctttttt agaatgtagg aaagacttgt gaggacacct aaattctcat tttaaaacgt
      481 ttaatttgta ttagtcatct aaaaagcctt agcttagcta gttaaatttg gacaaactat
      541 tccctattaa acaactgtaa aacctcataa ccaatagttt gtaatatatt attttccata
      601 aattctagat tgcaaatg
//
LOCUS       KCOD01002239             560 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 249273pyr ultra-conserved element
            locus uce-3452, sequence.
ACCESSION   KCOD01002239
VERSION     KCOD01002239.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 560)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 560)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..560
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="249273pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>560
                     /note="ultra-conserved element locus uce-3452"
BASE COUNT          175 a           90 c           94 g          201 t
ORIGIN      
        1 gcatgtgttg gtaggtaaaa taaagcattt catattgggg gtaccaaaac cctttctttt
       61 taatgtgagg ccttaaaatt caaagccatt tctgcatctt gagtcagtat aaaacatatt
      121 taaaaattca tatagttcaa atttctttgc cttgcacagg ccataaggta ctggtgtggt
      181 gggtcagttt tgacactgaa aaatgaatcc agttagagaa cctcctgaag gctgttgatg
      241 atcgctataa taaatagtgc acactttaag tcaaactttt tcattctgta ttcaaaggta
      301 atggattttt cgtaaccata gtaaccttag tgtatttctg gataaataca tgaggtatat
      361 acattctggt tttatttttg aatataaact accacattat gtattactaa taatatgaaa
      421 aataggatat aggttagcat aatgacagct caaactagtg tgcatttttc ttctgcaata
      481 aatatttatc aaaagtgtag gttcaattaa tttctcccct atctccccag ttttctggta
      541 ttcttgcagt gccatttatc
//
LOCUS       KCOD01002240             457 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 249382pyr ultra-conserved element
            locus uce-5084, sequence.
ACCESSION   KCOD01002240
VERSION     KCOD01002240.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 457)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 457)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="249382pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>457
                     /note="ultra-conserved element locus uce-5084"
BASE COUNT          132 a           87 c           78 g          160 t
ORIGIN      
        1 tgcaaactgc taccaaccat cataacggat gacgcctttc tgtcaaactt atatgagatt
       61 caagtccgaa caacgtggca ttttgggtaa tggctgctat aattaaaatg ttttactggt
      121 gtttttagta atggctttgt tctacatgaa gataaaaact ccctaacaaa ggaattaatg
      181 tattgcttta ataggctgca ccctgagtta agttttaaaa tttatgagtt ctctgcagca
      241 ttgttcttta aacaatggca ttgtcaaatg caaccagtga gaagattaaa gttctcccag
      301 cagattaagt acaaattatc tgtcctcctg tttcagcatc atttgttcat ttatcacata
      361 acgtctagta tttctggtca gtgtcaatat gctctgcatc cttgcagtta acagatgtct
      421 tctcttgtcg aatgaattac tttatgtttc acgcact
//
LOCUS       KCOD01002241             709 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 249485pyr ultra-conserved element
            locus uce-972, sequence.
ACCESSION   KCOD01002241
VERSION     KCOD01002241.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 709)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 709)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="249485pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>709
                     /note="ultra-conserved element locus uce-972"
BASE COUNT          188 a          129 c          146 g          246 t
ORIGIN      
        1 acacacccta cctttttgta tctccttgca ctacatctat ctggtagagt ctgctctgtt
       61 aataataatg ctgaatatgt aaatcctccc agtttttata actagtgttt taggttgcat
      121 ttactataaa caaagatgta tttttggggg ctgttggttt gagtttattg tttatgtaaa
      181 tctctcagaa tgtgacatag ccagatagct tcctatgttg tgctgatcca cattttaggc
      241 cagcagccaa agtattttat cttttacttc attatagtga tcttccaatt agctgtggtc
      301 tgtaataccc tgattttggt ggcagtggtt tggggaggat tgtttgatag ttctgctcga
      361 gaggcaaaat gaggggcctt attatagaaa gtgcagaggt tgtgcagtag ctgagttctg
      421 ttgcaaagtt tgccgataag ggaaaactgg cccttgagca tccattctat tctgtatatt
      481 aacacttcta atctgcactg ctgataaaac tgcaagccat ttgcctttgg aggaattagt
      541 tctgcctcac ttgtgtaacc aggcgatggt gattaacctt taaactgtcc aatattctca
      601 gcagactcct gctccagatt agaaactatt tagttatgac caactaaatt aacaacattc
      661 cctcctctga agaataagat ttggaaggta tgcattttaa ggtggaatg
//
LOCUS       KCOD01002242             302 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 249589pyr ultra-conserved element
            locus uce-1155, sequence.
ACCESSION   KCOD01002242
VERSION     KCOD01002242.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 302)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 302)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..302
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="249589pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>302
                     /note="ultra-conserved element locus uce-1155"
BASE COUNT          112 a           38 c           56 g           96 t
ORIGIN      
        1 agggatttca gtaaagagac aatgtttatt ttttcagtgg aaaattgatt gtaactaaga
       61 ggatacttgg cttgaaagtg gggaattatc atatcatatg attaaatgaa agcttacctt
      121 gttataaggt aactagacat atcccaatag aattgagaca atgtttgatt aagccagatt
      181 ttcctacttt aaattcaagg aacaaattaa agaataattg agatcctttt cagatctttt
      241 ataagctgaa tatataaagc tgcagctcca ggtggcaaag caattagctg atgaataaaa
      301 tc
//
LOCUS       KCOD01002243             716 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 249697pyr ultra-conserved element
            locus uce-1588, sequence.
ACCESSION   KCOD01002243
VERSION     KCOD01002243.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 716)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="249697pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>716
                     /note="ultra-conserved element locus uce-1588"
BASE COUNT          201 a          175 c          161 g          179 t
ORIGIN      
        1 gtggtttaat ggagagggat tggtgtgggg acatgcagga gtggagggtg acacctcgct
       61 cggggcagtg tggagctggt gattcctggt ccccagggac ccagagcagc cccagcaccc
      121 catgtccttc ctgcccacac ataccctggg acccactaga gcccagccca ggtccctgga
      181 aacagaaggc acggaattga gatttgcaga tctgataatg agccagttaa tgacataaat
      241 gatacctcaa gaacctcact aaaccatcca ggtcctacaa tttaatctgt aataaatact
      301 cctgcatcat tgcgagatgg ctgctcataa tggcaaatga aatatgctgg tatgataggt
      361 acaataaatc tggattttcc tatggttccc tcaggctaga acaatatgta accagagtgc
      421 gcactgtcag gatgagcaga tctcaaagcc atcataaaat ctaaatgggg actaattagg
      481 aggcccttcc cttctagagt tactatttct attgacattt tccatgcatg agcccctcca
      541 taacatcata agtcaccaag ataagaactc cctagattat agggaaaaag ctttaatgga
      601 gaagttgaac tcaaaggcga tgcataaatt ttccttctga taccccggga agtctgtgtt
      661 cagtactttc tttacaaact ttcctcccca gtgccagctg ctgctctgtc cggccc
//
LOCUS       KCOD01002244             626 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 249809pyr ultra-conserved element
            locus uce-6400, sequence.
ACCESSION   KCOD01002244
VERSION     KCOD01002244.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 626)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 626)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..626
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="249809pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>626
                     /note="ultra-conserved element locus uce-6400"
BASE COUNT          180 a          150 c          124 g          172 t
ORIGIN      
        1 gttcagacca gctcatctgt tgactttggc agaagccctt aatctcactg tgtgcagctg
       61 ccacttgaga gctggggact cggcagagag ccgaaggagg ctgggatgca gggttggtca
      121 aggcatgaac acataggcct gcttcatttc aacagccgta cactgcattt tacagccctg
      181 aaattaaatg aggacctctc atgagccact gcgctccagg cataagaaat tgtaatgtct
      241 ggcttccaga aactgtcccg tcaaaatgtg cttctgatta ggtggcttaa ttacagctgt
      301 gaaaacaatg ttgatttagg cctcaagatt ccagtgcatg tcagccgtta ttagctagcc
      361 ttggactgaa gccaccattt taaaactctg taccactaaa gtcacacact gcctgacaac
      421 tttttattta ggcagaaatg ttgccagaag caacacattt tatgcaaaat atttttcatt
      481 gcgcaaattt caaatgtgac acagttgatg gacataaaaa tgggtggacc tcaccaagtc
      541 caaaacctaa cttttacccc aacacatccc cctcccccat ttcaactaaa gtttgactga
      601 cataatgctt aattttaatt ccttta
//
LOCUS       KCOD01002245             589 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 249917pyr ultra-conserved element
            locus uce-610, sequence.
ACCESSION   KCOD01002245
VERSION     KCOD01002245.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 589)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 589)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..589
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="249917pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>589
                     /note="ultra-conserved element locus uce-610"
BASE COUNT          181 a           99 c           88 g          221 t
ORIGIN      
        1 aaagcaaggt atttctgcac agaaacactt tacagtaaac tttcagacca ttacacaatt
       61 tcacacaggg catctttgaa aataaatcac tcttcatact ctttgtggct ttctctactt
      121 acactttcag gggaattcca gaacattttg caattagcta aggattatat ttccttattt
      181 ttattaattt tatgtaaagt gggatttatc agtggagcat tcattgacac tgacttcaat
      241 ttattctgat gaaactgact gacatctgtg tgtgctattc atcagtcata atttaaacca
      301 ttcttaattg cattaaatgt aaattaagac attcaatttc agccattatt tttcataaaa
      361 cactgtgaac tgaattttag tgggtcacga gatcttacat tcaaaataaa tagggtaaat
      421 ttgaaactta ccattgatgt tcatatttca ccctttgtcg gctgtatttc ttttgtagct
      481 tactagattg gaacaattaa ttttctctct gaagggaaca tgaatggcta aagatgatgt
      541 agctgagttt ttttacaaat tacttcatca tttctagagc ttgcttgtt
//
LOCUS       KCOD01002246             275 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 250023pyr ultra-conserved element
            locus uce-5862, sequence.
ACCESSION   KCOD01002246
VERSION     KCOD01002246.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 275)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 275)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..275
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="250023pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>275
                     /note="ultra-conserved element locus uce-5862"
BASE COUNT           95 a           34 c           42 g          104 t
ORIGIN      
        1 tatattaaaa ttaacatttt ttaataacaa aaagtgatat agtccactgg agtaggacta
       61 aatttatctt atgattgtac ttgtcatggc tttgagtatt tattgagtag ttttaaaagt
      121 tcattaaact caagagatta aatattgccc cgagcagtgc tccataaaag aaaaaatata
      181 gtgctattac ttggtaaaat gttgtgctat gttgttaatt taactgttct catcttaaaa
      241 gacattttct tgaagatgac attttccatg aatct
//
LOCUS       KCOD01002247             523 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 250124pyr ultra-conserved element
            locus uce-6618, sequence.
ACCESSION   KCOD01002247
VERSION     KCOD01002247.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 523)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 523)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="250124pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>523
                     /note="ultra-conserved element locus uce-6618"
BASE COUNT          158 a          105 c          113 g          147 t
ORIGIN      
        1 agctcatacc ttgctcctct gaatttcctt aaaggaaatc aaacagtgct ctagtgccat
       61 taatatcaat cataaaattt ccagcttcca ctttagaaca tttgggagct acaaatctag
      121 aaagacaaat tagctacaac atctattcaa actaatacaa agtccattca cttgccatag
      181 tttaaatccc ctcaaagcaa ctcatgaagt gtaggaataa gcctgacctg cgaggcaagg
      241 gtgatgcttg gctgagactg caggaggttg gcttggcttt gctgaggtag ttgcgttaag
      301 agattctgcg cttgcaggag acctggagag agaaaagtgt gcgtttggtt tgtcgttaaa
      361 aacactcaat gaggtaaaac gaggctcttg acaaatgatg gaaagctatg agatgtgagc
      421 tttcatttca tccctgcata gatatcttca gacttttttc ggctcaaaat gattttcctg
      481 aaggtgacag aaaagtctcc tctgcaggca ggaatcattc gct
//
LOCUS       KCOD01002248             572 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 250234pyr ultra-conserved element
            locus uce-3652, sequence.
ACCESSION   KCOD01002248
VERSION     KCOD01002248.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 572)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 572)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..572
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="250234pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>572
                     /note="ultra-conserved element locus uce-3652"
BASE COUNT          148 a          119 c          113 g          192 t
ORIGIN      
        1 ccctcatggt tcatttcttc ttttcctcat ttttgtcttc tttttccctc ttatcttctc
       61 tttttctcct ccttttggtt gattctccat tccttcattc ccctcttctc tcatttaatt
      121 gtttagagca aattttcaat ctataaaccc attacagcaa agagacttcg ttgaggcagc
      181 ctctgagcct gcagatgtgg tgggtcctgg attccaataa cagaacttat ttggcattat
      241 ctgtaatgtg gaaatggttt ggcttgaggc taaaatttat catcattacc ctaatatcat
      301 ctcaagcctc tgctctggca gcagctaaag aaaacaccaa ggcttaattc agtcagtgca
      361 aggaaagaga gacagaggat ggaaaatatg atttatgatg gaaatcaatg caatcataat
      421 actttatgct tgtaaaattg ggctgttcca acagtgctca cagattgtat aggcagctct
      481 ccaccactca tggcaagaca gaatgcagta gtatgatggt gcagctggca caaaggattt
      541 ggggtgtgaa tgggagcagg ttttgttttg ct
//
LOCUS       KCOD01002249             696 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 250342pyr ultra-conserved element
            locus uce-5410, sequence.
ACCESSION   KCOD01002249
VERSION     KCOD01002249.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 696)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 696)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..696
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="250342pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>696
                     /note="ultra-conserved element locus uce-5410"
BASE COUNT          209 a          141 c          143 g          203 t
ORIGIN      
        1 aagatgaatt gccatcgctt cgctgctaca ttttgtcagt ttgggcacag cagagtcaat
       61 accttcacct tgacacggaa actttgtgat ttatcagtgg tgctgtgact cagtgctacc
      121 acgacctggc gaggtgcagc cactcatggc actgagcttt ggtcacagct acttggaaaa
      181 aaataaagca ctctctgatg atagacaaat gtgtcttgtt agcaacagcc aaaaagcgct
      241 tgacttgtac taataacaaa aaggccatgt tggtcaccat gggtctaaag acgaagcacc
      301 ctgtcactgc cttggttggg aaattagcaa ataatgttcc ttttccttga taaatgggtg
      361 acagttctct ctcaccaatc attttttaac attttgatgc atgtctatga tcccgctgga
      421 ggaacagaaa agtttactgg ccctcaattt tccgatgatg aatggaacac tctaaatgtg
      481 cgatttctgt atgaggtata gttcatttta agcaattcta gtaaatgggt gtcactgatt
      541 aggacaaata gtctacttgt gcaatagcac aaatggtatg tctcattctt ctggcctcct
      601 ttgagacaga aaagaaaggg gacaacaatg accctgataa acctggaatt gctactgttt
      661 aaaaaagagc tattatataa tatacattat ccaaca
//
LOCUS       KCOD01002250             752 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 250451pyr ultra-conserved element
            locus uce-6228, sequence.
ACCESSION   KCOD01002250
VERSION     KCOD01002250.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 752)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 752)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..752
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="250451pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>752
                     /note="ultra-conserved element locus uce-6228"
BASE COUNT          169 a          222 c          165 g          196 t
ORIGIN      
        1 cttctcatta cagatgtatc tttgcatcga ggaaagcggg aggaaaaatt gttctttcag
       61 ggtgacagct gagcgagggc tatattatta aaggtaccaa tcataggtgc cgagctatca
      121 tcgcacgatg aatgctcttg tcaggagccc gcggcggcgg tggtgggaca gcggctctcg
      181 cttccccgct ctcctcccgc tctccctctc ctttaatgtt ggccacctcc gctcgcctga
      241 acttggacct tcagcggcga caatttctct ggcctcgaca gcacgattaa tttctcctgc
      301 cctcggcggg gcctccgagt gcggtggaag tccagctggc ctgctgctga taagatgtac
      361 cttttgattt gttttgtctt tgattgcctt ttctgtcacc tacaatggct ggccgcctgg
      421 agacctccac atcgcctgac tgacggatct atttatctat aggccccagc ttctcctccc
      481 cctcgctccc ctcctccccc aaaccaccac cttgtaccac tgaagtccca gtctaataga
      541 agccgtgaag gctcatccac cataaaatac atctgccatc ctccttctct ccaagataaa
      601 agcctgtcag tgttactttc caattccagg cagcttgatt aatggtgaaa agccactgca
      661 agatcgactt ctggttttta caagcgctgt cagccagccc agggttatgc gaaacacact
      721 catagaaaac aaaacaaaat gagaaaaggt tg
//
LOCUS       KCOD01002251             655 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 250565pyr ultra-conserved element
            locus uce-4882, sequence.
ACCESSION   KCOD01002251
VERSION     KCOD01002251.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 655)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 655)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..655
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="250565pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>655
                     /note="ultra-conserved element locus uce-4882"
BASE COUNT          201 a          139 c          115 g          200 t
ORIGIN      
        1 tagcaaattg cttgacgtat ttgtcacgtt aaaacaaact tgtgtttaaa tgcagtctgc
       61 ttatcatatt tacagaataa aaatatgact tttaaaataa aagagctcac atctcctccc
      121 tctgtgtttt taattaaaac cacaaaccaa cacatgtatc catccttcct tctgcaatag
      181 cttgggattc cactctcaaa tactatacag ataaaacgaa catttatgtg ttagggattc
      241 actgtgcagt aaattctcct ttccaaacct gccgtcttca ttaaaatctt atttgctttg
      301 taatctcctt tgatcgctaa agttataaga agccccctcc tcttcttttg atactatcag
      361 tgtagctttt gaccagagag cgtgatgaat taaatgtatg acagatatga caggtgagga
      421 gtgcttggag agggcttaaa cagcagggat aagacaaagc ccccatttaa gaacaaaacc
      481 cctacccgat ggctagcccg ttaatgacca accactctat ttgtcctggt ggatgaggag
      541 caagctgata ctacagacaa agctttgtta ggctgttctt caatcaggcc acacaaccaa
      601 ctaattgaaa tgcccagttt ttgatttgat atacaagcgg gtttgtaggt gtact
//
LOCUS       KCOD01002252             391 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 250675pyr ultra-conserved element
            locus uce-6903, sequence.
ACCESSION   KCOD01002252
VERSION     KCOD01002252.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 391)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 391)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..391
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="250675pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>391
                     /note="ultra-conserved element locus uce-6903"
BASE COUNT          116 a           86 c           61 g          128 t
ORIGIN      
        1 aaagtgaaca ccttggagtc accaaagctt ttggtgttta tagctaatta atagccctaa
       61 tgatattttt ccaagtccat gaatacatta tgtttgcaat ccaaaaagcg ttagccccat
      121 tcaagggtac ttcaacatct gctcatttaa gggcaattaa tcattttgat atatggttta
      181 aaattgactg cttccaaggg actttttttt ttgacaagaa taacaaagca atttgccagg
      241 agccatcttc tggacatgtt attagcagag ccttcatctt aaagagggta aaaaaaaatc
      301 ctcagattta ggtacctgct ttaaagggaa cccaacacct tctctctcct gctttctttc
      361 cttcctccaa ttcctgatcc agcccttcat t
//
LOCUS       KCOD01002253             620 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 250780pyr ultra-conserved element
            locus uce-6272, sequence.
ACCESSION   KCOD01002253
VERSION     KCOD01002253.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 620)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 620)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..620
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="250780pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>620
                     /note="ultra-conserved element locus uce-6272"
BASE COUNT          198 a          138 c          103 g          181 t
ORIGIN      
        1 tttcatctga tcaggatcaa agcttctccc ccctcctgat cactgggatt aaatcaccaa
       61 tgtcatttta cacttttaaa aagtacactg ctaaagcaag atataaaagt gcagcaaggc
      121 tgatcataga gaccttagaa tgccctcaag actctctctc tccctctgca tttgctacag
      181 agcagctgtg cctcacacag attcaaaata ttaaggcgag aaaccaccca cttagtttat
      241 tttccatatg actttcctgt aattattttg taaactgttc acacaacaat atataaaaac
      301 atctgcaaaa acaggtaatt aatgtgtaac taatgcattt tttatggtgt ccatgcttcg
      361 tcaactgtaa ttataactct ttttaagcaa atgatgatgt gtttgttgca atgtgcaagt
      421 ggttatttta gatgctctgt ttactattcc cgcaaacaga aaaaaactct acagctactt
      481 tggtgcacat ataagccttc atccacacaa gcaggctgct tttccaaagg tatcttaaaa
      541 tgaaaattgg ctttggaaag gctgaccagg ccacccgctg accaaagtaa caggaagcca
      601 ggacattagg acagcagcca
//
LOCUS       KCOD01002254             805 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 250889pyr ultra-conserved element
            locus uce-6245, sequence.
ACCESSION   KCOD01002254
VERSION     KCOD01002254.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 805)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 805)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..805
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="250889pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>805
                     /note="ultra-conserved element locus uce-6245"
BASE COUNT          220 a          171 c          180 g          234 t
ORIGIN      
        1 gtggataccc tttgcccttt gatcctgaag atcctgccaa cagcatggtg ccaccccttg
       61 cagtaatgga gaggcctccg gtagtggtaa atggaagaca taactatgaa acttatttgg
      121 aatacatttc taggacttct cagtctgttc cagacgtaac agatcgacca ccacactcct
      181 tgcactccat tccagcagat agtcagcttg atagcacatt cccaccacct gcccatgatg
      241 ataatgtatc aatggcttct tctggggcca cccaagctga actcatgacc ttaaccattg
      301 tgaaaggggc ccagggcttt ggcttcacta tagcagacag tcctacagga cagagggtga
      361 agcaaattct agacattcag ggatgtcctg gtttgtgtga aggtgacctc attgttgaga
      421 tcaaccagca gaatgtacag aacctgagcc atgcagaagt agtggatata cttaaagaat
      481 gtcctgttgg aagtgaaact tctttgatta tccatagagg aggtaagttt ggaaagtctg
      541 tacaattaca aaaatgtgtg taaaaggttc taaaccatat atactcacta gatccttgtt
      601 tgctagattg gaaattaatt tccatgttgt gggaggggtt ctggaaaagt atgtcttatc
      661 ctaggcacag tttgttgtac attcctttat gtgttttgag tgtcaatagt cccatctctg
      721 tatccagacc tttcaaccca taattgtttg tgtggtgtct gcagcaaact catgtagtcc
      781 cgaagcagtg ctgcaagttt tagat
//
LOCUS       KCOD01002255             759 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 251000pyr ultra-conserved element
            locus uce-27, sequence.
ACCESSION   KCOD01002255
VERSION     KCOD01002255.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 759)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 759)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..759
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="251000pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>759
                     /note="ultra-conserved element locus uce-27"
BASE COUNT          247 a          128 c          134 g          250 t
ORIGIN      
        1 tcagtttaca tcagaggttg gaggatagca gagttccgcg actaaatctt ttatttccct
       61 cttcagaaaa taattttctt actattgttt tcataaaagc tttcaaatgc cctaaaataa
      121 taccgagatt ttattttgaa caggatttct caatacgtac tgcatctctt ggcatatcta
      181 ttatattaac tcaagcctta atgatacaat ggttaaaaac agagtacaga tgtgtataaa
      241 tgaaaaatgt aatagatttc cctcttaatg taatagaatt ggcacgaggt attggaaaca
      301 ggagtgaaag tagtcactca agcattgtgt ttgcatgtta tttaaataca agtggttgag
      361 gtataagtac ctctaagtac acctgaaaga gatggtgcct tgtaatcatt gtttcagcaa
      421 ttgacagttg tttacacaac agcagcacat tctctactga tttgaataat aaacatgttt
      481 aaacaccagc tggataatag aaggataatt gaaacatagt ttaaagctct gatttacagg
      541 cattgtggca acacttttat ttgtggtaca atgctatact tctgtgcagc ctcttgaaaa
      601 aattaaatag gcattgtttc aaacaacttt gggatatatt taactcaatt aatctatcat
      661 gcgtttgtgt gcctgaacaa agagcacacc atcgaaactt ccaaaagcct tatgctggtg
      721 acctcacgct actgcttggt ttattataca tttgctggg
//
LOCUS       KCOD01002256             614 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 251100pyr ultra-conserved element
            locus uce-2310, sequence.
ACCESSION   KCOD01002256
VERSION     KCOD01002256.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 614)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 614)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..614
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="251100pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>614
                     /note="ultra-conserved element locus uce-2310"
BASE COUNT          154 a          126 c          116 g          218 t
ORIGIN      
        1 cgtttccaag tttgtattta gaggctattc cttgatacct ttcataaggc atttttatac
       61 ttacctttaa aatgtcccat gtatgtaaaa tgtccttaag atgctctcaa gtgaactgac
      121 gtgctgccca gtgcacccat gggctgatgt aatagctcct ccaaatgttt ttttcctcag
      181 aagacttttt ccagaaatgc tgctctcggg ttctgctcct gcatgagaac aaagattagt
      241 ccttcatggt cctaaactca atgcatgtgc atgacttaaa ggcattacct gccaataaat
      301 gggagattag ctgcggcttg tgtatttcct gatcagttca ggttttttca gatggctcgt
      361 tgttatcccg tttcctttaa cgatgggaca ctttaatgag tttgccatct gacatacatc
      421 tgcttcctgt taaacaatac cttcattctt ctggagctgc taaactcatc ttttatccta
      481 caagattttt aatcggtgtc agcatattaa tttacgttgt tgaaaatgaa tagcagaacc
      541 tttaatgctt atttgtggga gaacatggat attatttctg taattagggg ctggtcactc
      601 cagctcatgt ttga
//
LOCUS       KCOD01002257             603 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 251204pyr ultra-conserved element
            locus uce-5634, sequence.
ACCESSION   KCOD01002257
VERSION     KCOD01002257.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 603)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 603)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="251204pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>603
                     /note="ultra-conserved element locus uce-5634"
BASE COUNT          147 a           95 c          125 g          236 t
ORIGIN      
        1 acttttctgg ttcttactat ttttcatgtt attttgagca aaggcagctt tttcttatat
       61 atagtttccc tgtttctttg ggtgcatttg gaaaggtgga ttaaactaca gttttattga
      121 aagcgattgg ctttcaagtc agtagggttg tagttccttt caaaattcag aggttaagac
      181 aaatcctttt cctgtccttt tatttagttt agatttttat ttctttgaag caaaatgggc
      241 aaatagattt tagagtatta gtagaatcat tatatcactg tcgttggtcc tggggttgcc
      301 aggccttttc tgattatcag atgcaacaaa tgacgtccaa ttttattgac cagtttggct
      361 tcaacgatga gaagtttgct gatcaagatg acattggcaa gtgagtataa agtcttgtga
      421 gttttctttt tggctggctg ataagaagca tttactgatt aatcagtcct gtcttgtgtg
      481 cattgataga agccttcctg agaaagcaac agcttctctt ttaatctcct gttgagaacg
      541 ctgtgcctga attataactc tgctttttga agctatggct ttttgttgac ccattgtttg
      601 ggt
//
LOCUS       KCOD01002258             743 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 251310pyr ultra-conserved element
            locus uce-1762, sequence.
ACCESSION   KCOD01002258
VERSION     KCOD01002258.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 743)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 743)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..743
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="251310pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>743
                     /note="ultra-conserved element locus uce-1762"
BASE COUNT          235 a          128 c          138 g          242 t
ORIGIN      
        1 aaattcatat ttaaatttca gatgagctaa ataaacagtt tcgttcagat aaacagctga
       61 ttttgttcct ctcatgttat attaatatta gtattatgga gtcttctgta cccttgcttt
      121 acttcctgac tagctgataa ttgggttggc agagtatacc tggggtcatc ttgtttagct
      181 tatctgcaca agagaaagag tggcaaataa taagggaaag cagcaaaaaa tgaaaggaag
      241 atttaatctt tgaccaattt gaaacatatc ctagagaatc cgtggagaaa aagataaagt
      301 gtgactatga gtaagttaac taaacacatt acagtgtgtg agagtaaatg gagttagtcc
      361 attgtacatg tttaatttcc tattagtctc tggcgtttac tactccagtc tgagttgggg
      421 catctgtaaa ttcagttaaa tacagtgcat tgtctaaaca tatcacagct ccaatcagtc
      481 acccgggctg ctgataagaa gcctcttgta ttattgaatc tacaataggg aggctctgca
      541 ggcacaaaga taacagctag gtatttcact ttaagtatga gaaaaagcag tgactcgcct
      601 ttgctgctgc agctctgaca tttattacta ttccctgatt tgttttatac tactgatgtg
      661 aatttggttt caagtgcttt atatctcttc ttatttctaa cttaagacct ctatctgaaa
      721 aacaagcaaa ccaaaatcaa ctt
//
LOCUS       KCOD01002259             612 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 251421pyr ultra-conserved element
            locus uce-5825, sequence.
ACCESSION   KCOD01002259
VERSION     KCOD01002259.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 612)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 612)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="251421pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>612
                     /note="ultra-conserved element locus uce-5825"
BASE COUNT          188 a          114 c           94 g          216 t
ORIGIN      
        1 aaaatattat taaagtatct gagctaagga gaataacttc cagacaatga catctacagc
       61 tctacatttt catgaaatgt ctatacttaa caaaaacatt acttcatttt catggtattt
      121 cttttgtgcc taggagcaac cctgtaattg ttcacttcaa ttacaacatt actattttat
      181 actgaaaccc attttatctg catgccagct ttttatttgt tttaccaact atatctattt
      241 ccattactgc aaggctgatg gtttgtctca agaggaaatc aaatccatta attcagaaat
      301 ttcaagcacg gctgcctctg ccataagcag catttcttat gctaatagca aatgtgctga
      361 gactgaaaag aactgacaca gctctgtttt ttatcataac ttaagcattt atgtaaaaag
      421 gcaaatccaa tagtactagg aaactataag tgttattata tataattcac tttactgaga
      481 actgcataca gcctggtttg tgcaactgtg tcttaaatca tgctgtttgt ggttttaact
      541 cgtttgacat ttggggtctg tttttgatct tgggtacctc aatgaaaatc tgccattgtt
      601 catctggcaa ca
//
LOCUS       KCOD01002260             829 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 251531pyr ultra-conserved element
            locus uce-1732, sequence.
ACCESSION   KCOD01002260
VERSION     KCOD01002260.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 829)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 829)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..829
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="251531pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>829
                     /note="ultra-conserved element locus uce-1732"
BASE COUNT          270 a          137 c          200 g          222 t
ORIGIN      
        1 ggatgctcct gatgcactga tctagaagag acatgagcaa agtagaaaca atgacatttc
       61 gctactgtat gaattccctc tcccttcact taatcctgtt cttactgggg ccttgtgctg
      121 aaagctgata attttgatgg cccctgaata aagccggtag cttgaattcc tgccaccagc
      181 ccccgtataa tgaattgggc taatgaatgc tagtaagtgg taggaatctg tgaccagctg
      241 catcaaggca ggtaatacag ctcagattta attgggagca ggtattggaa ggctgtatta
      301 ctttaattgg tgcgggggtt ttataaatgg aagggacaaa gtataatgga caaattgtgc
      361 tgtacaatag cacttaagcc gggattgtat gcattcgtta atctgttgag gaatgaggca
      421 attctaaaca attttctcag tgaaaccaac tccagaaagc ttgtcccttt tgttctccct
      481 tgggaaaatg caagattgaa acagaaaata cctttaccga ggcaatcatt tgccacgtgt
      541 ggaaagcgga tacagctgta aactatgaaa gagggatctt tgtagtacaa taaaggatgg
      601 aaaaagagat aaagctgggg ataagagtgg gcctgtcact gcatccaaag aaggaataaa
      661 gtgatgacat ttacagtgac agatgagact gtaaagagaa ctcaggacaa tttagagagg
      721 gaaatttgat atttaaaaga aagggctctg ataattaaaa gtagcattac attaaactgt
      781 tacgcatgtc attagtgaca gaagggaact ggtgcctttt gaaaagtta
//
LOCUS       KCOD01002261             485 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 251640pyr ultra-conserved element
            locus uce-1211, sequence.
ACCESSION   KCOD01002261
VERSION     KCOD01002261.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 485)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 485)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..485
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="251640pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>485
                     /note="ultra-conserved element locus uce-1211"
BASE COUNT          143 a          112 c           77 g          153 t
ORIGIN      
        1 tttttatgtt tcaacctcac tccttttcct cagactccag ttcccgtatt ttccttaaaa
       61 ccccaaatag tctaggtagc cacagaagtg attgttccta ccagtttctt ttcatcactt
      121 ctgcaattga ccaattgaca actgattgat ggttatcttt tcacttccac aatgaaagaa
      181 attaccatca ctatagctat gtacagtaaa tgcctccaga gtaaattaca tgattctaaa
      241 attctcctta gctcacttag taaaacatca acacaaaaag tttctttttt gcctctcttc
      301 ctgtactgca gatttggcct ttcctgtcag cttcagaaaa gaacttgaca gcttctttaa
      361 aaagaggagc ataaaagaac ttgaataagg gatggcacag ggccgggcta aggcttccat
      421 tctctgcaag tggctattct ttgcactgtt aggcatgtga gcacagataa gccacataag
      481 aatac
//
LOCUS       KCOD01002262             811 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 251752pyr ultra-conserved element
            locus uce-3982, sequence.
ACCESSION   KCOD01002262
VERSION     KCOD01002262.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 811)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 811)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..811
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="251752pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>811
                     /note="ultra-conserved element locus uce-3982"
BASE COUNT          265 a          178 c          157 g          211 t
ORIGIN      
        1 ccatactgtg caccacctga aagcaaactc ataacagcat agcattttct agctttattt
       61 atttgctaca cttactttct aatggagtgt gtgcaacatc atatttaaaa catgacctta
      121 gaaacttaaa aacacatcca tttctcccaa agaatataca gctgccagag aaaaggggac
      181 attcagtaaa ctgcatgtca ctatcagcta ttgatagcca gtgatttgtt ctgaatccaa
      241 aggctaaacc aaccctcatg ctgctatatg tcagatgcaa ttggtccaaa gtcaaagttt
      301 tacagctcag acagggcgca ctttatcctt caggctgcta cttaagatag ccatgaccct
      361 gaggagaacc agtcaacaaa acagacagac aagaggatgt gatttgtatg catccctgag
      421 cctgctcaaa tcacctctga ccttcaggtc aggctgcaaa tgacagcaga gtgcatgcac
      481 ctgatcagac agcacattct cattagaaag cctgggaaaa gggggcagct acactgtgtt
      541 tactcataga ccaaatgcaa tctacccagg aaatgagaag aaaaaagatc aatttagctc
      601 aacagaagga tgtgagcaac atgtaagtgt gttatgaaat tccatatcaa actgcttatt
      661 cttatatacc cagatgggag ctctctgcct gggtgagtca ccaagaagac aggttagcaa
      721 tgtgtattta tttgctgcag aataccatgc caggagtctt tactttctaa tagactgaga
      781 tccacaatca aaggcattta taggcttgat t
//
LOCUS       KCOD01002263             497 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 251863pyr ultra-conserved element
            locus uce-5709, sequence.
ACCESSION   KCOD01002263
VERSION     KCOD01002263.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 497)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 497)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..497
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="251863pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>497
                     /note="ultra-conserved element locus uce-5709"
BASE COUNT          129 a          100 c          116 g          152 t
ORIGIN      
        1 ggctgcccct gccatgaacc cggagagccg ctgatacagt ttggtttctt ttcttatttc
       61 cctctccttt ctccggcgct cagtcttttg tgtcagcttt cagaaatgct ctgtttgact
      121 ggcagcctgt cacagatcag ttaccaccta aagccgcttg gcagggagag gtgacggccc
      181 aggaagggat ctaagtgggt ttatcagtgc ttctttacgc ctcgtgagct ccttgacaca
      241 aaaggaaagg gtattaaaga tctaaagcga gcccaaaagc gtgaaagctc cttataggct
      301 gcgagatgtg gatgtgacta aatttttaaa tattttgagt tgatgctatt cattttgcca
      361 atagagtaga aagaattttt gttacagaaa tgagtgtatg ttccacttga gtgagatttg
      421 gaaaagggag gaagtcccta aatatgtgct tggaatatta caactaccct ctatttacaa
      481 tcatgcatct gttttaa
//
LOCUS       KCOD01002264             429 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 251970pyr ultra-conserved element
            locus uce-6316, sequence.
ACCESSION   KCOD01002264
VERSION     KCOD01002264.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 429)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 429)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..429
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="251970pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>429
                     /note="ultra-conserved element locus uce-6316"
BASE COUNT          149 a           75 c           65 g          140 t
ORIGIN      
        1 aaggttaaaa accaatttgg tttgaaattt tctgaaggaa tcacagtaaa caaaatctgt
       61 ttgcctaagg aaaccctcgt agcaatcagc cagtaacaca actgcttgtg ctaatgaacc
      121 caaagctgtt aatgtggttt cttcagttaa attgattcat gaattttgaa gagaacatta
      181 tctaatgaat tttctttgaa tagaaagcaa ttaaaaggac aaatcagtct gattaacccc
      241 aaagtcaccc tactgccaca aatggtgtac agtttgaaat tatatcataa aaaactagag
      301 cagatttgct atctctttgc cctctactaa tccatgtaaa ttaatgaaca acaaagttaa
      361 tttctttgat gacccttttc tcgtatcacc tggattatgc tgatgtttaa tttgcttaat
      421 gttataata
//
LOCUS       KCOD01002265             557 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 252077pyr ultra-conserved element
            locus uce-6601, sequence.
ACCESSION   KCOD01002265
VERSION     KCOD01002265.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 557)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 557)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..557
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="252077pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>557
                     /note="ultra-conserved element locus uce-6601"
BASE COUNT          175 a          110 c           90 g          182 t
ORIGIN      
        1 aaataaaaag gagaatactg gcacacttaa tctttcttat acccaatcat ccagtacagt
       61 ttatcaactg ctttatgact ggcactagtg cacagattga agaatttcaa gattactata
      121 tataaatcta gcaactgcat taggcataag ctccctggcc ttctaatact aagcaaagct
      181 gtactgacaa gaaaagtaaa ccaaaaagac ctgacaacaa ttattctgaa cacttgctaa
      241 atgtcatcat taaagcactc tcgtgattaa acaaagcaga agtgaggaaa gaagacaaga
      301 ttgtgtttgc gctaactaca attagttcca aaattttata catgttaaat gttttgttac
      361 ctattctgtt atcaaacaaa ctttaaattc tgtcttccaa tttgttcctc tcaacatcaa
      421 ctttgcttta tttgtatgcc ccatttcatt tatttttaag aggagtctca gctgtttggg
      481 acctgaggtt gatttgcttt gaggcttcgt agtgctcttc ttgcagctgc agatttggca
      541 atcctgtagc ttctgcc
//
LOCUS       KCOD01002266             421 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 252185pyr ultra-conserved element
            locus uce-5970, sequence.
ACCESSION   KCOD01002266
VERSION     KCOD01002266.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 421)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 421)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..421
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="252185pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>421
                     /note="ultra-conserved element locus uce-5970"
BASE COUNT          119 a           87 c           83 g          132 t
ORIGIN      
        1 ggcagggaat ctttgatact gtgtgaatgt tgatggcaaa cattttaatg aggccagcct
       61 tgggtttaag ttgattgtaa atcagtaaaa tgtgctgggc tttctaagct ccaagttggc
      121 aacagcttgt tgagagtaaa tcctctcatg gaaggttttg ctaatctgaa taaattcaat
      181 ttcaaaatcc ttccttgatc taagcttgct taagctctca ccaaggccta aggaccctga
      241 gggtcaattc caataacaaa agataaaaaa atctgccctt tctcatatct ctttgcaata
      301 cactataagc tgttacctca ctgcaaaaaa tctttggctt taatgaagtc gccttttgat
      361 ttgttgagga tgaagttcaa tgtttcccac cctggtgcat gtctctgcca cccaggacca
      421 g
//
LOCUS       KCOD01002267             533 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 252289pyr ultra-conserved element
            locus uce-6317, sequence.
ACCESSION   KCOD01002267
VERSION     KCOD01002267.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 533)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 533)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..533
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="252289pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>533
                     /note="ultra-conserved element locus uce-6317"
BASE COUNT          159 a           99 c          115 g          160 t
ORIGIN      
        1 ttccaggcgg cgggtgccag cagaacccga tacggtgcga tctatagaag caaggtacaa
       61 ctggaataat gaaacccttt ttaaaggctg gttgtaacag tcctgctggg tattgtaaat
      121 gcctcaggtg cacttgatac tgctgttacg ttcctggccc tggctcctaa tttttatgga
      181 aagatggatt gaacttcaat ttaggaatat tcggtaatcc ctctcaggac atactgtaac
      241 agctggtatt tctgtgttgc agcaaatcga ttccatacag cagtcagcaa tgcctatggc
      301 tggggtccgg caaaaacttg caaagcattt taaataaagt gagccaaaga aaatagcatc
      361 atcactgcaa aaatgtagct taatttgcac gttaggccat cccattccag caaaatatta
      421 agcattttac tggtaaggat ttcatcaggt catttatttt tcattaatat atatttagga
      481 tctgggggga ataactttat gtatataagt ttcttaaata atgaggagct tga
//
LOCUS       KCOD01002268             755 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 252399pyr ultra-conserved element
            locus uce-6189, sequence.
ACCESSION   KCOD01002268
VERSION     KCOD01002268.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 755)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 755)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..755
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="252399pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>755
                     /note="ultra-conserved element locus uce-6189"
BASE COUNT          257 a          140 c          133 g          225 t
ORIGIN      
        1 aaaacaggcc acatggctag gcagcagaga acacattgtt tccagacaaa tccccatcaa
       61 agacatatga ctccggactc tgaagtcaga acatcttcat attttaaatt tccacgagca
      121 ttttcaagaa aagctggagt tctgctatag gatttgctac acacttttca ctactgattg
      181 ataaccagaa gcggcattag cagtattttt cccccatcgt tcctctaaag ctaatggagt
      241 tgaggattcg ttacttgatc taatggcaat agctttccaa tagacatgca cagaatcatt
      301 gattagtttg tcctcttctt gtttgcattg gaacactgtt caatttacac caattaaaga
      361 atgcttggtt tgtgtattga agaataatta agggatggaa ttccctatag gctactaaaa
      421 atgacatctg actagaatgg tgattacagc atgaagacag cattagtatt taaatagttt
      481 gactgctata taaaatcatt acaccacctc accatgaaaa agagcattag ttaattttgc
      541 ctacaacaaa attagttgta tgtatttgcc tggtcacttt aagtaaattt gacaaggcta
      601 atcttaaagc aagcgatcca ggtttggtgg aaggagcaga tagagcactg tttatcatct
      661 tgatagatat gtatataacc ttcaaccaaa atacaaatac acacaaatga atagcaagag
      721 ctttgtcaga gatgctcaaa tcaaatgtaa acatt
//
LOCUS       KCOD01002269             716 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 252506pyr ultra-conserved element
            locus uce-6329, sequence.
ACCESSION   KCOD01002269
VERSION     KCOD01002269.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 716)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="252506pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>716
                     /note="ultra-conserved element locus uce-6329"
BASE COUNT          249 a          145 c          143 g          179 t
ORIGIN      
        1 attatgcagt gcttctccta tgcaaactgc ttcgagagaa gccaccgaaa tccatcggag
       61 tagtatagca tcctgttgtc tagcaaccaa gtgcaccaag aataattcct gcttatattc
      121 cgagatgtat aaatttcttc atgccactgc acatgaagca catacctttt gcccctctga
      181 gcacaaatcc aaatccttca ttgtcttttt tctgcaggac cactgccttt tcttctatta
      241 tgcagtcact gtagagagaa ttccgaggat agcgaccatt attacatccc ttcatcacca
      301 ctgtagtagc tgctcctcca gtgtgcaggt tcatcatcat cacagcccgt taatcaaata
      361 atattgcagt aaccaagcat gggaaaatat agaacaaata gcagcgaggg gaagacaaag
      421 actaagctgg atggtaaaag agaacatgac aaagcaactt aaaaggagta aaaaaggcag
      481 agaggaaaaa gaaagaagaa gaaatcatgc atggtggttt gtgttctata tgaatgactg
      541 gatgaacatg tgatcatgta atctgtgggc tagctaggac tctaaaagga aaaaaagtaa
      601 gtgaactgaa cgacagtatc attaataaac tcctcaatcg tggatgtacc agatgcatct
      661 tctagtgaag ccaaaatgaa accaaccaga agaaaaatga ggcagcattt taaatt
//
LOCUS       KCOD01002270             773 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 252618pyr ultra-conserved element
            locus uce-962, sequence.
ACCESSION   KCOD01002270
VERSION     KCOD01002270.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 773)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 773)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..773
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="252618pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>773
                     /note="ultra-conserved element locus uce-962"
BASE COUNT          204 a          158 c          173 g          238 t
ORIGIN      
        1 gctttgtcaa gaggatcctg atgtagtgtg gaatgaacct tttttcaaaa gcgagcacaa
       61 aagtagattg agaggtgagt ttgtttctta aatggtgttt aaataaagaa acatacagtg
      121 ctttacaggc catacaagac aaattccttg caaaattctg ttataaaaac atctacgcag
      181 aaaaggaaaa catcagctta aatcagtgac aagttacaag tttgctagca ctaacagaaa
      241 ctgtattcca tgatctaggg attgtgttaa ttaatgtggc tctcatctgt tggaggtgtc
      301 gctcttcatt agcctgtatt ttacacactg ccgtgcttca tttttggaat gaggtggtga
      361 ggggataacc tagccagcca tccttgtttg atctctgtga tacatacgca atgcagaatg
      421 cctcagctct cttggttccc tgccctgtcc tgctaatccc agctgagctc attatggtgt
      481 agccttgctg ctactcctgg agccagagct gtccaagcta attactggta gcagcagagc
      541 tgcctgttaa gggtctggtg tggatctgct aacatggtcc ttggtagtga cctgcaaaaa
      601 gcacgaggga gttgctctct ttcttgctgt gcacagcctg tcctttgggt ttagtgctga
      661 tcccttcaca cagctctttc agctgtagta agtgtaaaac ttggtgaagg aaactcttac
      721 tttagaaaac atacagtttg ctgctttgat ctcataattc ataggctatt aca
//
LOCUS       KCOD01002271             433 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 252723pyr ultra-conserved element
            locus uce-2987, sequence.
ACCESSION   KCOD01002271
VERSION     KCOD01002271.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 433)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 433)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..433
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="252723pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>433
                     /note="ultra-conserved element locus uce-2987"
BASE COUNT          161 a           63 c           65 g          144 t
ORIGIN      
        1 aaaaaagaaa aaaagtttga aatgctgcac ttacattttt caacaatttt caacaattac
       61 acaaaaattc acacagaaat ggggaagttg gtctgttttg acagaaactg acaggaatca
      121 atcaaaacaa tcgaattttg aattgagtaa agtgcaattt cattggatag ctaaatatct
      181 ttgtaagata gagattgttg aaaattctat ttttgttttc caagtccttc caccccagga
      241 ctctaaatta ttggggtaaa aaacagcctt gcaagaaaaa ggggagctat ttttgctttt
      301 tatgtttttt attgttgaac ttgtatccct ttaaaactga aggaaaatta aaaacaaatc
      361 taatggtgct tttaccacaa tatgttaact acattaaatg ctaattaatc attttctgtt
      421 atcaaagcac ata
//
LOCUS       KCOD01002272             485 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 252829pyr ultra-conserved element
            locus uce-6309, sequence.
ACCESSION   KCOD01002272
VERSION     KCOD01002272.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 485)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 485)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..485
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="252829pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>485
                     /note="ultra-conserved element locus uce-6309"
BASE COUNT          147 a           83 c          110 g          145 t
ORIGIN      
        1 tgtttatctg atttaaagat gatggaaagg aggtatttat tttactccac ttcctgaaag
       61 gtgatcgtac ttacaaaatt tgctgagatt gtccaagaaa gtgtgtaaaa tcctcatcca
      121 tcagagcccc tggtcaggga atgacagtgc agtaaatatc ttcagcagct gccttttaat
      181 gtacaagctg ttttcggtag gaattttcag cactcacata aaacacactg tcatgagtga
      241 ctgcctgtgc tccaaagtca ttactattgg gatgatggaa catctttcag tgaataacct
      301 ttaaatgtca tgtcaagtgt gttgaaggca ttttcaagcc ttgctcaagg ttacatgaat
      361 attgagtagg cttgtaaaaa gtttgagatc tgtgagagga gccactcata tgctggtttg
      421 gagagcagtc acttgagctg gaaggtgggg aacaacagaa aagaaatctg tttaatacat
      481 gccaa
//
LOCUS       KCOD01002273             496 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 252939pyr ultra-conserved element
            locus uce-7167, sequence.
ACCESSION   KCOD01002273
VERSION     KCOD01002273.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 496)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 496)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..496
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="252939pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>496
                     /note="ultra-conserved element locus uce-7167"
BASE COUNT          167 a           83 c           92 g          154 t
ORIGIN      
        1 tttatgcttg aaaaatctat tgctcattaa tcttcccagt ctaacaaaaa attgtcctgg
       61 cctccagtca ttgttcaaca ttaaaaaaac tgacaaaggt tgattgtatt gtaattcagc
      121 attggagtaa caggttgtaa aaagggttat aagaatcaaa tgaaatatgt gtcagtctta
      181 cctttctatg tttctagact ctctgacccc agagatagaa gctgaccgca gcgggggcag
      241 aacagatgct gaaaggacaa tacaaggtag gaatttgcaa aaggctataa atctagatct
      301 tgctatatga gtttttcctc agctttagac tgctattcaa gcatgtagcc taccatctgg
      361 gccacatcaa aacaagttca aacaaggtca agttcatctt gcttgtttat aagagagaat
      421 gtgctgatag attttcttta aattaatagg tcatttctgt ttatacagag caattaaaga
      481 agaataatta atttga
//
LOCUS       KCOD01002274             593 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 253046pyr ultra-conserved element
            locus uce-4992, sequence.
ACCESSION   KCOD01002274
VERSION     KCOD01002274.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 593)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="253046pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>593
                     /note="ultra-conserved element locus uce-4992"
BASE COUNT          180 a          113 c          110 g          190 t
ORIGIN      
        1 actcctaaaa tatgctgagt gaggttcggt ttctgagttt gttcctccct tacatttcat
       61 gtggtatatt tctcaaacag ggaacctgct cattctctct gtttaccagt agataaagta
      121 gaactgaaaa cactgtgttg tactggaacg tgaagaagtt cagagttcaa aacaattgct
      181 tgctacaaaa ataaaggaag gcctctccta tgaaatctat gaacttgaaa cagggataca
      241 gagctagtcg ttgccaataa ctttaacttc atttatctat atttggcaaa aattgtgctg
      301 cagctggaga tgaaatgctg agctaaataa ctgcagcgac gtgagctcca aaacagcaat
      361 tactaagctg tgctgccttg tgtaagattt tacttttatt tattgtattt aaagaaactc
      421 tctatctatg tacagtacaa caagaactgc ctgatcaaat aatgcctgat tgcaaggcct
      481 ctcagctcca ctgtcagttc agtgtttagc aaggaatttt ttgtgaagcc aaactacaat
      541 gctttttatc attctgcata cctttatgtt gtctctaatt gcaaggagta act
//
LOCUS       KCOD01002275             324 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 253153pyr ultra-conserved element
            locus uce-4779, sequence.
ACCESSION   KCOD01002275
VERSION     KCOD01002275.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 324)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 324)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..324
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="253153pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>324
                     /note="ultra-conserved element locus uce-4779"
BASE COUNT          106 a           58 c           57 g          103 t
ORIGIN      
        1 ttgtgagttt ggggtgaact gcttgtgaaa cactaagatg accgccccag cacattacaa
       61 aaattgcaaa cttagttttc cattaacatt ttctattttg gcatcttaaa aagagtggaa
      121 gttgatttca gcagaacatc ctgtggggaa attagttcat tttgctaaag tatcttaata
      181 attacagtga catcaaggtt aattgcttaa tctgtattgc catagtgcag tcctgtagaa
      241 atcccaacac aatctgttct ataattagtg ccagaatacc catatataga acaagctgta
      301 gccccctgat atgattaata aata
//
LOCUS       KCOD01002276             783 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 253261pyr ultra-conserved element
            locus uce-3328, sequence.
ACCESSION   KCOD01002276
VERSION     KCOD01002276.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 783)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 783)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..783
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="253261pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>783
                     /note="ultra-conserved element locus uce-3328"
BASE COUNT          268 a          117 c          176 g          222 t
ORIGIN      
        1 gaagctgagt gaacaaaact cattgcattc aaaatatact gccatgtggg tgttttctcc
       61 tgaaatgtta ggagctggaa agctagtgct tttatccaac atgccatcca gtcatctgaa
      121 caattacttg cttaaagcaa atgacatcca gatactggag agagataaag ttaaaagtca
      181 gttcattaaa aatacttttc tcctcaagaa attatttggt ttttgaagta aattgaacat
      241 aaatggtagg aaggaagaag aaaaatgtga aattttatca taccatttta agtttgatta
      301 tgtcacagag aaagcaaatg gcaacagagt ataaaggaat ctaatccata aaggaagaga
      361 aaaaggttaa agaagtcaac agtaattaaa tggtgattga agctgaaaga aaattgatct
      421 gtgttagctg aaggccattc ttgccttttg ggatgttatg catcagtgaa gaggggaaag
      481 aaaggttttt ccttttttga tatggaaata tatgtcacat cttcttagcc tatggtgctg
      541 tgactcaaaa ctgcactgag tttctggtac gctgatccta gtgtcctacg catgcttgtg
      601 ggtattgtgt aaagataaga tgctctaaca aagcttggca aggtcaaaag gcatgggagc
      661 ttcagcagtt tgcatgtggt tttgtcttgg ggcgaaaaat aaaagcagcc taaagcaaat
      721 gaatctaaat aggggtagca ctgacacatc catgcaaaag ctgtgcaata gccatgacta
      781 ggg
//
LOCUS       KCOD01002277             849 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 253371pyr ultra-conserved element
            locus uce-318, sequence.
ACCESSION   KCOD01002277
VERSION     KCOD01002277.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 849)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 849)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..849
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="253371pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>849
                     /note="ultra-conserved element locus uce-318"
BASE COUNT          273 a          154 c          163 g          259 t
ORIGIN      
        1 tagtttcagt tagatttaag aggcaaggca gaggtaaaag tcagtgtagc aatgaggtgc
       61 attaatctac cgtgtcagtc tctcttcgtg ttgctttttt ttcctacagc ttgatagata
      121 attcgtttat atgcaatagg aaaaatttac tttgcttcgt gcagcacatt tataaatgca
      181 tcataaagaa atagttttta aaaacattat tgctgctttg aaaaaatatc ctggacttgg
      241 ctttctcctt ttgataccat tttctctgtg atgtaactga gtgattttgc agcagaaagc
      301 tccaaaaatt aaacctgaac tttccaaata gcttcctaat aaccgttgcc caaatcaatg
      361 gggctccatg aatattttga cacagtttaa atgggtttgt atcctcacca ttgagatctg
      421 gtgatttagc ctgtcaggtt gcaaatgtgg aaatatcacc tctcactgag caaagtccaa
      481 tatctcatta gaaatgaaaa tagaagagaa gggaagcaca aatgctgtca gtggcagtga
      541 ggaaagaaat taaacctccg gaggcctgta tatcttatac aaaagattat gcactgccag
      601 gctgtataaa tcatgccaag gctctggggc tgcaatgggc tagaaaataa aaaaccataa
      661 aagtgtcata ttgaaataca gtcactgaga attcttttat gatgagtcta aattcgcctg
      721 acattctcgc aaattcaggg gcctgcttgg attgtttata cccagacttt tgctgtcagt
      781 cacgaagtcc cagtttccac agcaaattat tctaaacagg gcttattatc aaagcataaa
      841 aaagttaaa
//
LOCUS       KCOD01002278             485 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 253478pyr ultra-conserved element
            locus uce-7983, sequence.
ACCESSION   KCOD01002278
VERSION     KCOD01002278.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 485)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 485)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..485
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="253478pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>485
                     /note="ultra-conserved element locus uce-7983"
BASE COUNT          150 a          106 c           99 g          130 t
ORIGIN      
        1 ttagtaatat catttctctc atagtttatt acagggaagt aacgggcttg cattctgaag
       61 cctgtctcca cccattgcat tcctggtgat ttttcaattg caaactccaa ggcccagtta
      121 tttcattaat tcagcaccca agtagtgagg cttttctctc acatctttca gtctcctttt
      181 agcaaattat cccatgacgg aggatttatt cagtcaaaga cctcggactt tgagaggcaa
      241 caaaagaatc aagagacttt ctggtccacc tgcctggcga atgatgaggc agggtaaagc
      301 ctcccctaga gaaaccaatc aaaccattgt gtggcacagt cagacctttt caactgtcaa
      361 gccaggagag caggaaaaga gatgaaagaa ctcaggatga agctaccatt tacagaacca
      421 tgtgggaatg gtctccgaag atttaataat tgggatggaa ctcaactttc tgaaaactaa
      481 aagaa
//
LOCUS       KCOD01002279             658 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 253585pyr ultra-conserved element
            locus uce-4078, sequence.
ACCESSION   KCOD01002279
VERSION     KCOD01002279.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 658)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 658)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..658
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="253585pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>658
                     /note="ultra-conserved element locus uce-4078"
BASE COUNT          208 a          116 c          137 g          197 t
ORIGIN      
        1 cactaagaaa ataaactgcg tgaaagccat taaaaaacgt ggtttaaact taagaataaa
       61 tgcaatggca tagtcacatt ctttaaaagc tttgctctgc tccgaatggc tttgttatta
      121 gtgattctta atgcatgaga tagtggtttg gaataaatct ttaagtaatt caaaacaagg
      181 actcttcagt aaatagttga aattaaaggg ggagttagag tcatctggtt tccattagga
      241 tgataaaata gttcacttga aaccttttac aagatgcttt gttactggga ggtgtctgtg
      301 catctcactc catcactagc catttgacac aacataaaag gcttcaaaag ccatgctagg
      361 cttcttaatc aaaaactaat tgtaatagat attggggagt gttaacactg tgaccgctag
      421 gttgtatctt cagtatataa gcaggagtga acattaaaca caaccctgag ttgatagggc
      481 ttatcagaat ttcagagtta agtgctaagt actgcagccc ggtatctgcg cgccgttgct
      541 ttgtaccact tttggagtta attgcgctgt aggacttcat cttcccaaca aaatttatag
      601 cattggcaga gaaactggaa gccccctgaa gaaactgctg cagtttacag gagttctg
//
LOCUS       KCOD01002280             674 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 253696pyr ultra-conserved element
            locus uce-5446, sequence.
ACCESSION   KCOD01002280
VERSION     KCOD01002280.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 674)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="253696pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>674
                     /note="ultra-conserved element locus uce-5446"
BASE COUNT          218 a          107 c          122 g          227 t
ORIGIN      
        1 gtagccttgc agtgactctt cttactataa tgctttccta acaaatgttt tgaactaaaa
       61 caaatgttaa agtttctttg agggacagcc atatacttaa tacacttggt ctggcagaga
      121 tgggtaataa tcatctttaa atccataagt ggtagaaatg tcaagtttat ggctaatacg
      181 gactataaga gttttctgtc aagtgttaat gataaaccca ctgcctgcaa aaactacaaa
      241 aggacagtgc ctctttaaca gggactactg tttgtgctcc atggagcttt gcagtattag
      301 taaagcagca tgaaagagtt gattttcatt ttatgttgtg cttgtgaggc attaacatga
      361 tgttctaaca cttgtaaatg aatacagctc ttgcctaatc tgtcatttta atgccttata
      421 gattttattt cactctgtgt tgtaccagat tctcaataat aataatcaac tgctttgttg
      481 ttctcttgca gaaattaaat ttctgtagtg agtgtgcaac taataaaaga tgttgcttga
      541 ggaaacaaaa aataaatatg atgaatcata aaagttgtat gtagggggtt gctcatatat
      601 gaaagacaat tactgaacca gtggtaaatt catctgattc tcatattgtc aacagcttaa
      661 taactctcac aaag
//
LOCUS       KCOD01002281             775 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 253807pyr ultra-conserved element
            locus uce-6923, sequence.
ACCESSION   KCOD01002281
VERSION     KCOD01002281.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 775)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 775)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..775
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="253807pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>775
                     /note="ultra-conserved element locus uce-6923"
BASE COUNT          247 a          157 c          139 g          232 t
ORIGIN      
        1 agagtttctg ttttctttga catgtcatgt gaaacaaccc agctgcagta ttatgacatt
       61 ctctgcatag aagtgtgtgt tatttgcttc acttgatgct acttcagcga aaccacagaa
      121 tctgtctgca taaaggaact agagaggggc tatggcagtt ttatttttaa ctgcttaaaa
      181 gaagaacaaa gaaacgactc gtcgttacca gtgatcaata aagagcagac agagataagt
      241 tttcttaatg gtttcttttt taaagatgtg tatgatgctg tatgcaaggt aacaacttct
      301 ttaggaacat cacagcaaga gacactggtt catgtaaggt tcacctatta cactgccctc
      361 cagccagctg gaggctaacc agtctgataa ccctacacca ccacagcaca ggcccaatga
      421 tttttacatc aagcagcctg atgtactgct ctgccatcta ccaatccctt ttcaatattg
      481 atccattcct aaatgagcct tccctgcttt gtaccatgag caataattaa aaaagcagca
      541 cattgatttt aactaatatt atgaaggatc tggatgtgca catgcttaca aaatagcgga
      601 ctttacccat cattcatagc acaacaaagg atcctgatta aagtttggac acagggaaag
      661 agaaatgtgt ctgcaattga acgtgtcaaa acttatacct attctgtttt attataaatc
      721 ttgtttcagc accaagggac ctagtcttat aattttcatt aaaataaatt agaga
//
LOCUS       KCOD01002282             566 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 253916pyr ultra-conserved element
            locus uce-424, sequence.
ACCESSION   KCOD01002282
VERSION     KCOD01002282.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 566)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 566)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..566
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="253916pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>566
                     /note="ultra-conserved element locus uce-424"
BASE COUNT          162 a          110 c          117 g          177 t
ORIGIN      
        1 gtaatacttt ctccttattt gtagccagaa tgttttgaga gagtaactaa gcagaggcct
       61 ggagattatg aaatttgctt aagtgttaat gggttgattg ctgagttaca gtctgccgtc
      121 tttactggaa attgattgac tagtgctgca ggtcttcaca cttgacgctc ggatttgact
      181 cgaaaattct gccaagtctt ttactctgaa atttatctta attagatctg aaagacctgc
      241 cacagcagaa tagtcacacc gattaaaatg aaaaacagga gaaattactg atcaaattaa
      301 tcataatgtc gggttacagc tgtaggtctg atgtaatttg ccactccagt gagttacatc
      361 ggcccaggca gaggaaagag agctggtttt acgctgatcc gtaacaccag gcagcttcag
      421 gcagcccatc aggatgcttg ttccattcat tctcttggct tattctgacc ttagagatgc
      481 aactagaaac gatttaggct aaagatgagc tttctaaatc cttcttgttt caccaacctt
      541 ctacttttgt ttgaagtaat taacaa
//
LOCUS       KCOD01002283             654 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 254133pyr ultra-conserved element
            locus uce-1976, sequence.
ACCESSION   KCOD01002283
VERSION     KCOD01002283.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 654)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="254133pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>654
                     /note="ultra-conserved element locus uce-1976"
BASE COUNT          219 a          122 c          126 g          187 t
ORIGIN      
        1 ggaatgtgta cctttcacgg gattattaaa ccactgcagc atttctattt aagatgaaat
       61 cttttaaaat aatgaaaatc cacaaaggtt ctaaattggt tttctcccac aatatccctc
      121 tgcaaataaa tcaaaggctt aagccaatcc tgtgctcgac cactaccgat tgtaaagaac
      181 ccttaaagct gggcacctgc agaacataac ccaacttctc acctgctgtg ctgtgttcat
      241 ggcaccctgc ctggaggtaa gctctgcggg gattggtagg ctccatgcct cctcaatact
      301 aggaagtaat ttagttttat tctgtagact accttgtgga aggttacaca actgagccta
      361 ggaaaaatta tgtaaaaagc aaatttaaca caagcctact ttagtaagag caagtccatg
      421 aaatcttcct aaatgctgta gctaattaaa gagaggatag atttaaaatt ttggggttta
      481 gaaaggtaaa gagggtaacc agaatataaa cctttgtgag aatcagaaca aagatgagct
      541 ctggattcag aggtctcata attccttttt tctgaaattg caaacaagag tgaaagatag
      601 tgtgttgcgt attctcacta tatgttatga gaacttaaat gtagacaaat acaa
//
LOCUS       KCOD01002284             470 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 254239pyr ultra-conserved element
            locus uce-4511, sequence.
ACCESSION   KCOD01002284
VERSION     KCOD01002284.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 470)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 470)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..470
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="254239pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>470
                     /note="ultra-conserved element locus uce-4511"
BASE COUNT          126 a          119 c          107 g          118 t
ORIGIN      
        1 ctcctttgga aaggaagctc gaagggttta cttctcttgc agccattact ttgttttaac
       61 aatttgttct ctttctccct aatgggaatt aacacagcga tcccgagcag ccctgcagag
      121 gtacctgttc tactgcaacc gctacatgaa ccacatgcag agcctgcgct tcgagcacaa
      181 gctctacgct caggtgaagc agaagatgga ggagatgcag cagcacaaca tgtcgtggat
      241 cgaggtgcag ttcctgaaga aagcagtcga cgtcctctgc cagtgtcgtg ccacactcat
      301 gtacacttac gtctttgcct tctacctcaa aaagaataat cagtccatta tctttgaggt
      361 aggaggtcag gaattcagat tgcaaagctg aggaaataga tttaatgcac ttctacccaa
      421 gtactccgtc gtgcaaaagt tagaggctca cagaatcacg tggctgcccc
//
LOCUS       KCOD01002285             530 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 254351pyr ultra-conserved element
            locus uce-3333, sequence.
ACCESSION   KCOD01002285
VERSION     KCOD01002285.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 530)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 530)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="254351pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>530
                     /note="ultra-conserved element locus uce-3333"
BASE COUNT          147 a           93 c          105 g          185 t
ORIGIN      
        1 tttgtggtat ttgtgttcat aaaatggagt ttaaaacttc ttacaaatac atattttcct
       61 atttacatat actcagcttt tcctctagac ttgtctttac actagcagct tttgtagtag
      121 acattacagt attcatttta tatatgtcag atcctcaagg gccatggctt ttgccagatg
      181 aagcactttt gattttgagg ctgatgaaac acagtgctat tattgatctg tgcatgacac
      241 agccagtctc tctgctggca gagtgtagca acatttatcc aggaatttgt gaaatgtcac
      301 tcagatcatg ttcgtaaggt aaactgtgca aaatccagga ttcaagctga gaatccatga
      361 ggaattggac gtgactctct tattccttca tcccatcttc taggtcagcc aagttatatt
      421 tgtttgtctg tgttttgtat taggtgttga agaaggtatg attatcacta ggaacaccct
      481 gttttggtca ctagggaaaa aaaagtgatc taagcattgc aagtgtgtaa
//
LOCUS       KCOD01002286             796 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 254462pyr ultra-conserved element
            locus uce-5286, sequence.
ACCESSION   KCOD01002286
VERSION     KCOD01002286.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 796)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 796)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..796
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="254462pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>796
                     /note="ultra-conserved element locus uce-5286"
BASE COUNT          274 a          150 c          175 g          197 t
ORIGIN      
        1 cacctgcaaa gtaccacaag gctttggaaa ggcagatcag ccttatacag aggcacagac
       61 ataaaattga accaaggaac aagctctgca ttaaacttgg tcctccttaa ggataatttg
      121 gaatgaggtg aatcattagc cgtgatgcat ttgttgggaa aatgtttcta atgccagtgc
      181 atttctaaga taaatagcaa tgatttgtat ttgttcctga gctcctacat gatattaatc
      241 tgatttgtta gttgaaattt ttaatgagaa aactggagag gacttaagaa accaagacga
      301 aacagacaaa tactagttct ctataagctt gaacagacat caaaaacagc accagctgcc
      361 atatttgtac ctactttgta gggctgcagg tatgcaaggc cttcaaatga ggcttccagg
      421 tagcaatgga aactgatttc tcatcagcag cataactacg ccatacacac tacgtgcagg
      481 atatatggta aaaacaaggc aagagggagc aggggatgaa acaaaaaatt gaaaagcaga
      541 ttagtaacca atacaagtca tatctttctc ttatcattca tagcactgat acatgcctga
      601 ggggaggaag aatactttca taatatcgcc aggtggctgc cacgtttgtt ctgctggcgt
      661 cggtagaata aaaccgccag gaagcctggt atggggaaac aatagaaaag tacaaaggaa
      721 ccaagaaaat gaagtgacaa tgccaccgct tttgctcaga ccaggatgtg ctcagttagg
      781 ctgattcagg aaatac
//
LOCUS       KCOD01002287             543 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 254572pyr ultra-conserved element
            locus uce-6464, sequence.
ACCESSION   KCOD01002287
VERSION     KCOD01002287.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 543)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 543)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..543
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="254572pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>543
                     /note="ultra-conserved element locus uce-6464"
BASE COUNT          150 a          148 c          126 g          119 t
ORIGIN      
        1 agcaggtgag agcagcagga aacacaaaca tcagatttca tgtacagata gtagcacagg
       61 aagacaaatt gagtgaatac ctcaggatgc tgctgggtca gcctccagca ctacccaatg
      121 gcagacaaat ccctgccctc agccttggca tgacctactg agatggctcc tgtggcccaa
      181 ttttcctcat tacctgcttc tctcaaagat aagagactct tgtgcaaagc cgctaattta
      241 gtcccaaaaa taagtctgga tgtgaaaagg gttttgacaa gatgcatgta gaggttgggc
      301 gactagtctt aattaggcca tctttgttta catttgatgt ttatcagcta attggcatgg
      361 caaggtgtga gtcacacagc ccctctggca tgaaatcagt tcgcaggaga aaaactggga
      421 gaacaaatga tcccaattat aagaaaaccc actgtaccat cccacggact gcggagcctc
      481 ccacccgcgt ccttgcccag ccgcccgccc cgcccaagca cgggcgcact cctcccgccc
      541 ggg
//
LOCUS       KCOD01002288             683 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 254684pyr ultra-conserved element
            locus uce-4915, sequence.
ACCESSION   KCOD01002288
VERSION     KCOD01002288.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 683)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 683)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="254684pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>683
                     /note="ultra-conserved element locus uce-4915"
BASE COUNT          203 a          143 c          144 g          193 t
ORIGIN      
        1 ttccatcaga agacacttct cagctattag atttgagcct attagagctg ctgatacaag
       61 aggaacccct aagaaatcct gaagggtgga actggacagc acgggagcaa taagcttgta
      121 aacacgatct tgttcttacc agggtttcct aattactcac accttctgaa ggaacacggc
      181 tcaaacaaac aaacaagtta caacaactga tcttgacata caagatgtca gaaccattat
      241 agaccccttt attgcagaat gatgtctttt gtgcttagag gcatgcttgc tattcataga
      301 gctactgctc agctgttcca gtttttagtt ctgcataaat gcccactcat tatgtccaga
      361 gggttttgcc tgtagctttg tgtttgtagc cttgaggcaa atgtcttgat ggcttaggga
      421 actccgaatg accaaataac atcggatttt ccacagcaac gaagccatta tgggacagca
      481 tttctatgta acagcaccct tcagtgtgca atcattataa ctaaggattt aaccaggctc
      541 tggggacata aaatcacttt gaagccagtg aaatcttaag cattagattt ctgaaatgct
      601 cgagtcaggc agctttgtca gctacagtaa aaccaagtga aggggaagga gtttatctta
      661 agaatgtgtt tgggcctctg cat
//
LOCUS       KCOD01002289             512 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 254790pyr ultra-conserved element
            locus uce-4982, sequence.
ACCESSION   KCOD01002289
VERSION     KCOD01002289.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 512)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 512)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="254790pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>512
                     /note="ultra-conserved element locus uce-4982"
BASE COUNT          143 a          101 c           99 g          169 t
ORIGIN      
        1 acttctttaa aacatatggg cctcattcta ttccaagtac tattcagagt atagctttta
       61 accaagactg gtagcattgt tgagacctca gaagtcttat taaaaagctg aaggcaacat
      121 gttattacct caaatgtcaa acctgaatca aaacttttca gattcagttt gaggtgtgga
      181 aactttcaca aatggagcag ctaagcaaat ggtttggatg taactgttct ttgaaatata
      241 tctgtgttcc tgtgacagtg ttgtgttgtt aatgaacctt gtgtcttatt tcagagagat
      301 tccccctcta catccagaca gtccccagct aatggtcata gcagcactaa caattctgtt
      361 tcggtaagat ttccagttcc acacagagaa agtgtgaaag ttttgttggt gctcatctgc
      421 cattactgtt aaacttatcg tgtggtcagt ggaaaatttt gtcctgctga gagaacccag
      481 gttattgcac atgtaactcc ccgttttctt ct
//
LOCUS       KCOD01002290            1045 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 254898pyr ultra-conserved element
            locus uce-1131, sequence.
ACCESSION   KCOD01002290
VERSION     KCOD01002290.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 1045)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1045)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1045
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="254898pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1045
                     /note="ultra-conserved element locus uce-1131"
BASE COUNT          320 a          170 c          179 g          376 t
ORIGIN      
        1 tatagccata gtttcctttg tgattctctc ttttaagctg gaaattcata aagatgtgaa
       61 ttttaaaact actggtcatt aggtagcatg ttgcagtttg ggaaatattt tgttttgttt
      121 ttaagcttaa tgactgtcct ttctgttttc ccatgagatt aaggtcgtat tttttatgca
      181 tgttgaaaaa tattcactta tcagtatggg tgcaactgta aacaagtgat aaagtgacaa
      241 catttacaac agcaaaactg acagcatttg ctttaatttt ctgccatttt tgtaattata
      301 tcaatcaaga ccaaaactaa aatgatattt tagcatgctg taagaaatga ggaattcaga
      361 tcttaaaaga ccattacaat tagctttgaa acattcacca ttttaacata attgtttcat
      421 atagcttata cgtcttcatt tacaggcaaa tattctgttg atcttttata aacaaagtag
      481 cacccatctg cttcttgaga cactcctggc gcctattcat tgcaaaaata atacatgtcc
      541 taatgacttc cacatatttt gaaatctccc ttttgaaatt ggtcttggca gattatttgc
      601 aggtacttga gttgcatctg tttgcaattt tgcaaatgcg gaagacttta atgttgagca
      661 ctgcaagagg gctattttaa tcctcagata acataggctg tcatcaaaag ccacatttat
      721 cttttcgaag gtggggcaaa tgtttaatgt taaaagacag taaaaggtca aggtcaaggc
      781 tgaggtctga atattttcct ttcataaaat tgtgtctttt gtcatttact tcttgcattt
      841 ttttcattta agtttcagct tagctttcca ttgccaagag gatgttttgc tgataaaaat
      901 gaaagatcag gaagagagta aatctgaaat aattgtgaac ttcggtctgt tgtacttatt
      961 attaccatgt ggttagcagc tgaccaactt aagccgtttt tatttacact actaaactga
     1021 gcagcattgt cctaggaaag tacaa
//
LOCUS       KCOD01002291             717 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 255008pyr ultra-conserved element
            locus uce-5391, sequence.
ACCESSION   KCOD01002291
VERSION     KCOD01002291.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 717)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 717)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..717
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="255008pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>717
                     /note="ultra-conserved element locus uce-5391"
BASE COUNT          221 a          138 c          134 g          224 t
ORIGIN      
        1 tctggtctcg ggaagggaaa gaaaaaggaa attcgccctg ttttcatctc ctcaaataaa
       61 tgccgtgcct gtgaatccat gcaactccag tctttactgt gcgattgaat gggaagtctc
      121 ctgggtgaag agctatccgg tgaatccctc gcagcactga taattatgcc attctgactg
      181 cttacttaat ctatttgaat ccagaggtga gttaagccac ttcctgacca ttaaagtaaa
      241 ctacatgggt aaatactgct gtcactaagg ggtgtgatga agcttaacta caccaacatc
      301 ttaacctcag ctcagtgcaa ccccagctat tccatcacag ttcataaatg cgattgcagg
      361 tccatctttt gattcagcaa tttaataact tcgagtgctg tcagtactgc tttgaaaaat
      421 ggctcctata aaatgtaaca gcctcaatca gattgtaaaa gattcaccca ctgaagattc
      481 ttccatttca actataatga attaatgttg agctgtgtag aagttcaagt gtcatttaaa
      541 ctaatgtgaa tctactgtaa ctttaaattt taactggact atgaccaaga atttactggg
      601 aacatcaact tcaattttag tgatttttca gggtaaatat gaattgcaga ttttactggt
      661 tcttttgttt taacaaagta gggaagatat ttagaaaaca acagattttg aggctta
//
LOCUS       KCOD01002292             373 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 255116pyr ultra-conserved element
            locus uce-3741, sequence.
ACCESSION   KCOD01002292
VERSION     KCOD01002292.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 373)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 373)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..373
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="255116pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>373
                     /note="ultra-conserved element locus uce-3741"
BASE COUNT          127 a           70 c           77 g           99 t
ORIGIN      
        1 aaaagacgca tgaatccctt tagtgattca tcaaacctat ctcatcacgt tgagttacac
       61 ttgcaaaata tataaggaaa aatatagggt tacttgatga cgatagtact gcagcctgac
      121 agctgcctgc aaatattttc accatgatta cccttactaa aagtaaacca ctgggtaaag
      181 atagctcaaa cgtgacaagg ctcaaatagg atgcaaccaa ctctatcctg aatacttctg
      241 gctacatatg gggagagatt tgggattatg attgtttcca gaactttaag cccgagcagg
      301 atgcagaatt ttacgagact ggctttgaga gtaagtgagg tagaaattaa tcaacttcat
      361 cagggaatga gac
//
LOCUS       KCOD01002293             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 255221pyr ultra-conserved element
            locus uce-4776, sequence.
ACCESSION   KCOD01002293
VERSION     KCOD01002293.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="255221pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-4776"
BASE COUNT          209 a          131 c          122 g          240 t
ORIGIN      
        1 gtcatatcga tctttttagc actaaaatat gagccacttt actccactcc ccgatgctgt
       61 gatgtgaaaa ataataactc ggatccaaat taaaaatatt gatctctgga aggtgttgaa
      121 agtaaataaa caccttccga agttttcggg tcagccaaga aatggtattc agcaataaat
      181 gtgtcggcat gtcagaatcc agggttcttg atctgttttt cctttcaaat tgatttttca
      241 ttacttactt cctaaaagtg ttggaatttg gtcctctacc gttaaatctc agtgtttggg
      301 caaattattt ctttggggct tatgaggtgc tcctaatcca ctcggtcatt gattgattga
      361 tttttgactc aataaacttg cattaccctt gctttattta aggcttccat cataattttt
      421 tgtacattta ggcttgactt ttttatttcc ttctaacaga tgagctgaca ttggtctatc
      481 aaacatgtgg gaaaacaatt gccacaaggt taattttatt gctagctcca tgcattttaa
      541 gtaggtgcca ggtattttcc actccaggct gataaattgc agttgaacca ctaaagcata
      601 agaatgaaca gaagcactgt aacaacaaca atagaaaccc catagaaatg catcacagag
      661 cataagcatt aaatggatta tttttgcttc attggtttaa ct
//
LOCUS       KCOD01002294             499 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 255329pyr ultra-conserved element
            locus uce-6103, sequence.
ACCESSION   KCOD01002294
VERSION     KCOD01002294.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 499)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 499)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..499
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="255329pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>499
                     /note="ultra-conserved element locus uce-6103"
BASE COUNT          150 a          111 c          108 g          130 t
ORIGIN      
        1 ttatggagcc ctggagtcct ccaggctctc aggatgaact tggagggtgg agtcatgccc
       61 tgaattgtcc ctcataataa ttattgcatt acaaggaaca attaatggtg tagattagtc
      121 taacttcatc aattttatgg ccattttatt gctctgcagc cgtgagaggc agagcccgcc
      181 tcctccatcc ccgtgtgtaa agggttaaat gagatgagtg acagcctttc tgcatgattt
      241 acaacttgga gccctgtagt gaaaccagcg cttgatggat gatcctgaaa gacggagact
      301 aaccataaat catgtctttg aatcattgac aaagataaag gagagaaaga aaaagcactg
      361 gcattgacat tcattctccc aataatgtac attgactagt tacaatacag agccttaatt
      421 aaaaaagcga actccgctcc ggcagcctca tggaaatcac aaataaaagt tccagccgca
      481 tcctcggtta cctcgctgg
//
LOCUS       KCOD01002295             638 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 255434pyr ultra-conserved element
            locus uce-6693, sequence.
ACCESSION   KCOD01002295
VERSION     KCOD01002295.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 638)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 638)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..638
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="255434pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>638
                     /note="ultra-conserved element locus uce-6693"
BASE COUNT          210 a          127 c          137 g          164 t
ORIGIN      
        1 cacacactct cacacacagg caaacagaaa gaatgaaata agccattaag aaatatttcc
       61 gcataatgca attattacag ctgtataatt gaatggggaa accattgatc tgtagtagaa
      121 aggaaattgc tcttttcatt gtgttcctat gaatatgtga acattaatct caatctataa
      181 tcaacgttca tttcaaatct gattgcgtgc cactaaacac ccgtagctat gctaacatta
      241 tgttaatacg gttcaacatc atagctccca gcttcacagc acaaatattt ttctttggca
      301 atcaatagta atttcagctg agtggatgga agtcacgttt taatggtaat ctttcctcca
      361 agcctccaag tggaaactcg actggtacct taacacggcc gcagtgcatt gcatgtaatc
      421 agataaatta acctaaaaga gagagagaga aaacacagat caggaataaa aagcggcgcc
      481 aagaagctct acattttcct gatggattaa agtgctcatt atcatgagag agagagtgga
      541 tttcaagagg ggaactgaat tcccttggct ttgagccgtg gctggagagg cagcaggtca
      601 cagaacgcag ccggggatgc ctctgaggag ggggaagc
//
LOCUS       KCOD01002296             842 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 255643pyr ultra-conserved element
            locus uce-7656, sequence.
ACCESSION   KCOD01002296
VERSION     KCOD01002296.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 842)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 842)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..842
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="255643pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>842
                     /note="ultra-conserved element locus uce-7656"
BASE COUNT          215 a          175 c          211 g          241 t
ORIGIN      
        1 tggggaccag gatgctctgc cctctggctg cctctgcaga ggggcaagga gttaagtgct
       61 gcaaagccct gaatgggcca cctgtgaggt ggcaggttat gctggtgaca aacgtgtgcc
      121 actgatgggt acatgctttt tgacctgctt taatttttct agctgggcct ctaattgtcg
      181 gggcgaggac aaatgcaata aagccaaaca aatcagagca aggctctaca aggaaatacg
      241 ttttagcaag actttttttc cttaattaat cgggattttg ttgtcaggct aaaacagact
      301 aaaaataaac agctgtatag tacttcatta agctgcctgc ttggagtgat tttcccattg
      361 attagtctca gggctaatgc tggttcattc ctcatttcat tgctaattaa catcagctct
      421 gctcctgacc acttgaccgc actctctcta tgaacatgtg ctggtttggc aagtaataac
      481 tgctccctcc ctctagaatt aaggtacaaa atagctatca agagtagatc tgtgcctcta
      541 ctgtaaggag taaaaccgtg ttggcccgta agaagggtaa taaacgtagt ttacagagcg
      601 caggagtttg attgaggaac tatgtaaata cagatgatga gctcaagctg ctgtatgaat
      661 tgacaggctt ggctcatctc ctgtcagttg agttgattca ggctcttctg ggatgctcgt
      721 ggtgcagatt acctgaccca ggggctttgg gctgctggcc gtcggaagag ggcagctctg
      781 gatgggcagc acttactttt accagtctct ggaatgttct cagagtttga ataatgaaat
      841 ac
//
LOCUS       KCOD01002297             792 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 255752pyr ultra-conserved element
            locus uce-3239, sequence.
ACCESSION   KCOD01002297
VERSION     KCOD01002297.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 792)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 792)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..792
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="255752pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>792
                     /note="ultra-conserved element locus uce-3239"
BASE COUNT          219 a          143 c          167 g          263 t
ORIGIN      
        1 ctatagttgt ttagagaagt atgtgctccc tgaaggacat aaagcacaga tttgttttct
       61 gatggaagtt tctcacttct gaaactattt tccctaaatt aactttcctc tcggttttcc
      121 ttttattctt cacatgaagt gtgagaatgg cggatggtaa acaaaagaaa tatttttgcc
      181 aataaaatca ttatatgcaa gtagccttct aatctcttaa ttttgattgt ttcttcgtta
      241 ccttacaaga tctatatttc ttctctcttt aggatatctc atgtcagatt taaggcttat
      301 ttaaaatgaa cagaaagctg aagcaatttt ctttattcca tttcagtctc ctaaggccta
      361 tttccccctg gtgagctcat agcaacaggg gggtttaagg gaattcagct ttctgcaaat
      421 taatgtctca catcatgaaa attcaggacc tttttttttt tatgtcttga aaaagtaata
      481 cagtgagtgt gagtattatt tcttgccagc gggtggaaga tgaatgattt tgtcacagtt
      541 ttactgcttg atgagcagtg tcctgagggt caggcttaag tctgtgtcac tatgctgctc
      601 attactcttg agctaaataa gggctgattg gatctaaatt gcctagcaca tgggctgcag
      661 atgagctcag tgagtagggg atgacctgct attcaggctg ggagtaaccc cggtgtgcaa
      721 atgctgcatt agaacaccgt gggagaatga gaggctaccg accgctgcca gcaaaagaaa
      781 tcgaaatgta aa
//
LOCUS       KCOD01002298             600 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 255863pyr ultra-conserved element
            locus uce-718, sequence.
ACCESSION   KCOD01002298
VERSION     KCOD01002298.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 600)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 600)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..600
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="255863pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>600
                     /note="ultra-conserved element locus uce-718"
BASE COUNT          179 a          112 c          110 g          199 t
ORIGIN      
        1 aaaaaccctc cccagaatgt tatactatta attgccaatt tgcatatgtg tgcagctgct
       61 gttttggctc cgatcttcca tccgataagc ttgctggagg tatcacagag cacttggcag
      121 ctttcctatt tgaaaagaaa gccttcctaa ctacagaaca gctgatagtc tatcagtgat
      181 agaccctgat ggcgtgaatt acaattacac tacttttcac actaaatctg ggtgatagct
      241 acttggaaag aagtttcatc attttttacc acaaactgga aaaagaatta catggtcatg
      301 ctgtgctttt aaaggcagtt tggttcactt ttgtctattt aacacctaat tccgaggagt
      361 ccataggcat ctggagatct gaacgtcgcg taatgaattc actgtttaga tgggagattt
      421 tttaaatcta cctcaaatta catttattaa caaggcgagc aggaagtgtt agagttgtta
      481 gacgcttcat ttattaaata atttgtggat attttcagtt gtcatatcca gagtcatggg
      541 ggtttactta ttttttaatt agcaattcca aaacaatgct accacaattt aacaattcat
//
LOCUS       KCOD01002299             652 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 255973pyr ultra-conserved element
            locus uce-4347, sequence.
ACCESSION   KCOD01002299
VERSION     KCOD01002299.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 652)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 652)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..652
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="255973pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>652
                     /note="ultra-conserved element locus uce-4347"
BASE COUNT          166 a          190 c          145 g          151 t
ORIGIN      
        1 agatatgagc tgcaaagcaa cagggaccaa ctgaggacag ctgtgtaact tatcccacct
       61 cgagacatca ctcagattag tgttcccacc acctgaagcc aaagagactc cctccaaaca
      121 aagcttcagc cacggactcc tcaccatcaa aggtgcccac cttgggaccc atgtcgccct
      181 ccccatcccc agctcagacc cccatcaccc caaatcccaa gagcctcaca acaccaagaa
      241 aggcagaaaa tgccatctct gctcccaact tacatttaaa ggctttaggt gaggtttcgc
      301 tagtctgaat ctttggggca agcatgcgtt tgccaaaaac ctgagcatca aaacttgcat
      361 aatcgaaggt gaccttggag tacttctcca gctccttggc caggttggcc cggggggttg
      421 ctgggaccat gttgggccgg tagcttccat actgagggat ctccagttgc ttcacaaagc
      481 acataggcct gaggatgaat gaacagcaat tatttctttt ccttgacaag gtgactgttg
      541 agaggggacc agcatgatca gctgcacctc attcctggac aaggaggcag tgacagccct
      601 ttgctctccc tcagtgagtc tgcacctggt ttggatctct cttttttcta tc
//
LOCUS       KCOD01002300             436 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 256080pyr ultra-conserved element
            locus uce-3081, sequence.
ACCESSION   KCOD01002300
VERSION     KCOD01002300.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 436)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 436)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..436
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="256080pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>436
                     /note="ultra-conserved element locus uce-3081"
BASE COUNT          151 a           73 c           65 g          147 t
ORIGIN      
        1 ctttttatta attacaaaaa atgcaatgac cactatagtt ttcattcaga gcaaaactta
       61 acaggaaaat aatatgaatc tcaacagact gtttgagtta tctgtccttt ctttaatctg
      121 agagattact caacaaaacc aatgttcatt caacaacatt catgaaatct gttgtggatt
      181 accaatatca tcagttaaac ctgtttcaaa tttattgctt tcattcaggt taaataatag
      241 aagagtccat ttgtaccacc acatgtatat acatgaattc agctttcatc attctctaca
      301 ggtttaatcc atgatttatg tttttcaaca cagttttggg caaatctgct gaaaaaattt
      361 agccagactg atagaagagt tagactggat tactgtgatg tgtgccatgt ttaaaaccag
      421 tttggagaaa aggaaa
//
LOCUS       KCOD01002301             319 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 256189pyr ultra-conserved element
            locus uce-7384, sequence.
ACCESSION   KCOD01002301
VERSION     KCOD01002301.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 319)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 319)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..319
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="256189pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>319
                     /note="ultra-conserved element locus uce-7384"
BASE COUNT           98 a           60 c           48 g          113 t
ORIGIN      
        1 ttttacaact ctcctttcat gatggagttt ttacttagag ttccctctgt tgatctgttt
       61 tcgattactt cagatcttta taaaatgaac tacaaaaaca caatttaaaa aactggcatc
      121 catcaccact gactgcatcc aagtgtaaga aaatagaaaa gttggacact gaaaaaccag
      181 cctaattttt attgtacatg gacgtcctcc tcacagaaag tcagctggtt taaattcatt
      241 ctgttatgat ttgtaatatc taaatggaat tttcttcaaa gtgctcttga ttgattgacc
      301 cttagctgaa cgttttgtt
//
LOCUS       KCOD01002302             690 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 256301pyr ultra-conserved element
            locus uce-712, sequence.
ACCESSION   KCOD01002302
VERSION     KCOD01002302.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 690)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 690)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..690
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="256301pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>690
                     /note="ultra-conserved element locus uce-712"
BASE COUNT          237 a          120 c          133 g          200 t
ORIGIN      
        1 gtttaacttt cagcaaatat ctttccaaat gaaccctgca gatctgtctg gctaagaaag
       61 gactcataga aagaatactt cattcctaaa taaatgagta caaatgcact cagaaaaagt
      121 atccgtgttt gttttaactt gacactacaa aagaagaggc aaggaacaat agtgaggtcc
      181 agctgttgtt tttcttgaag aagtcccagc tcctcatgca gagaaactac acttgagatg
      241 agctggctga gacaaatgtt ctgtctacac tttaaatggc agctggttat taaatgactc
      301 ccaataggat gaacacttgc tattgacaat aaggtaatat aaggaccatg cagtgcaatc
      361 aggatgggaa tgtgaatgaa aaatctttaa tctgaaatta cagctgtcag ggctatatta
      421 taaaacatga aagttgcatc tgcacttaga attaatgtgt cccaaaagcc aagtttctca
      481 taaagggcat cttgcagata cgtcttttat aaatagagta ctggtcttcc gtaaatcaaa
      541 ctgaaccgta gcctatacta aggaattaaa agggtcacct cttctggggt tggtatttgt
      601 tgaacagtat ttggtaaaaa tgaacattga tttacaaagt ccaacagata ctggtagtag
      661 tattacttta taatgatatt cacagactcc
//
LOCUS       KCOD01002303             728 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 256411pyr ultra-conserved element
            locus uce-4887, sequence.
ACCESSION   KCOD01002303
VERSION     KCOD01002303.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 728)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 728)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..728
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="256411pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>728
                     /note="ultra-conserved element locus uce-4887"
BASE COUNT          222 a          142 c          158 g          206 t
ORIGIN      
        1 ttcacacaaa attattcaaa aaaattccta caatatcttt aggcaacaaa ggatacttct
       61 ggtcatcgtg tggattctgt gtgctcaagc tctgatacaa accaaggatt ttcttctttg
      121 tactaagtat gggaaagcct gctcctttga gaattagaat agctttcgaa gacttctgat
      181 ttaaatttca aactcttgat catagtcagg gagcaaatgt ttgtatcctg aaattgaaaa
      241 ttgggttctt tagctctata ccaagtgaaa atattaagca ttttgttgca tccactatgt
      301 gagccaagtt ccccactgtg ccttcaaatc cacagtgaat gaaccatatt tggatctgct
      361 tatcagaagg agacatttag aaagacaatg agcctgtcct gctagacgga gactcctgat
      421 gcttttagat aggcctgcgg tgaactgcaa aatgggccct aaaatcaggc tgacatggtc
      481 gcttaacaag ctgtggtatt agctgttggc tcagagaatt tctagtgtca cccacagggc
      541 tgatgatggc agccatcata attagaatgc atgaatcaaa aacaccaggt gaagattttg
      601 ccttggaaga aagaaaagac agaaggaggg aattaccatg ccctttgact actaagctgc
      661 tgcatgcagc tggatcagtg accaacagtg actgggcgga ttatgctatg gagatacttg
      721 ctatagcc
//
LOCUS       KCOD01002304             563 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 256520pyr ultra-conserved element
            locus uce-4928, sequence.
ACCESSION   KCOD01002304
VERSION     KCOD01002304.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 563)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 563)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..563
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="256520pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>563
                     /note="ultra-conserved element locus uce-4928"
BASE COUNT          206 a           89 c           90 g          178 t
ORIGIN      
        1 tcttgcgcac tatagaacct tcacagtaaa gataaagaga gataaattga attaatttat
       61 tttgaatttc tgcattaata ttaagctaaa atctaaatag aaagactgta atcttagaag
      121 ttctagcatc agcaaatcat tcttgtttac cctacatgct aataaaacag gaacatgaca
      181 ctcctgaaaa caagattgca aaatacagaa aatgtggtct gacatttttt ttctccccaa
      241 aggagggact gccactaact aaagtatttc ttatgaaagc tcgattgctt aagatgcaga
      301 atattaagag agaaaaacac tttaggacac agccatgtca ccagctgtta ctcaccctta
      361 atgaaattgt taagtgatat tcttcataaa taggtcagtg aaacttttga attgtgaaga
      421 atgttttatc tctttctttg aaatgtttgt attaaattta gaactggtaa ttcattaagc
      481 tcattagctc tgactaggag agtagagcaa tatctaggat atagatttca aggcttaaaa
      541 accttagtgc ttacaaataa aca
//
LOCUS       KCOD01002305             384 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 256631pyr ultra-conserved element
            locus uce-3014, sequence.
ACCESSION   KCOD01002305
VERSION     KCOD01002305.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 384)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 384)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..384
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="256631pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>384
                     /note="ultra-conserved element locus uce-3014"
BASE COUNT          106 a           63 c           61 g          154 t
ORIGIN      
        1 taagagtcta tagaaagttt tcttttgcaa tccctaaata tttgggttca cattatcttt
       61 agctaggatt tattagacta tttcatattt gccttcctgt ttattttgta aaagtatact
      121 tgtctagcac acatttttat gccagccttg ctttgcattt ttacagtctg ctaattagac
      181 cattttaact aatttgtttg cattttgtat gagcaagttg ggcttttgga ttgactaatg
      241 taattgcagc cagtttctgc caaatacaaa ttactctttc tagtgtgagc tagagagaaa
      301 agtaaatatt taatagccat caataccctc gcagcattct agagtgtgct tttttcctat
      361 ggaaagttta aataatttct tcag
//
LOCUS       KCOD01002306             718 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 256743pyr ultra-conserved element
            locus uce-5158, sequence.
ACCESSION   KCOD01002306
VERSION     KCOD01002306.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 718)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="256743pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>718
                     /note="ultra-conserved element locus uce-5158"
BASE COUNT          197 a          145 c          168 g          208 t
ORIGIN      
        1 cagtgctaat agcaatacca tgtgggaaga tggtgtgttc tgtctagtaa tcaaacctca
       61 agttggtttc ggctgtgcta gtatactaca tgtctgtagg gactttctga ggtactagct
      121 cctggtagag ctatcagcac tggatttgaa ctaaggtagg taaccttgat ggccttcaga
      181 ctagagattt tgatgcttaa aataatcagg tactctgtag ctttgaaacc ctcttgtctt
      241 acagatgtgg ttaggtgttg atgtaccaaa tcaaggtagt aaacagtcca agatgcagtt
      301 ggaggccatc ctgccctgcc ctatgctctg tgaactgacc tagctaggcc ttgttcctct
      361 atctgtgaat gcgtgactca tcgatatggg cgtttgtgtt gggcccatac caaccttgtt
      421 tagtcccaca gtgttttgtt cgccccacgg aagcaaagaa agcagcagat gaagccaaga
      481 tgaggtttgc ccacatagat ggagatcatt tgacgttgct gaatgtctac catgctttca
      541 agcaaagtaa gtctgtttta gtaaaattgc tgccagcctc ggtttctggg ttccaaggac
      601 agttgaaatc aaacaaaaca aaaaactacc caagcaatct tgtaataagc caggctttaa
      661 atcaatgctg ggtaaccttg gacagcaagt gttcctgtaa ttaagaaata ttggaagt
//
LOCUS       KCOD01002307             538 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 256948pyr ultra-conserved element
            locus uce-4300, sequence.
ACCESSION   KCOD01002307
VERSION     KCOD01002307.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 538)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 538)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..538
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="256948pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>538
                     /note="ultra-conserved element locus uce-4300"
BASE COUNT          177 a           94 c          135 g          132 t
ORIGIN      
        1 agatgtaggg ccatctatgt gtagaagtta ttcagtagca tggctgattt tgtttcagag
       61 cgaaattgat taaaaatttc tcatgtttgt tttgcagtcg tcaacaagaa attgaagaga
      121 aactcataga ggaagaaact gctcgaagag tggaagaact tgtagctaaa cgcgtagaag
      181 aagagttgga gaaaagaaag gatgagattg agcgagaggt tctccgcagg gtggaggagg
      241 ctaagcgcat catggaaaaa cagttgctcg aagaactcga gcgacagcga caagctgaac
      301 ttgcagcaca aaaagccaga gaggtaacgc tcggtcgttt ggaaagtaga gacagtccat
      361 ggcaaaactt tcagtgtcgg tttgtgcctc ctgttcggtt cagaaagaga tggaatacag
      421 caaatctaat tcccttctca tataaacttg cattgctgcg aaacgtaatt tctagcctat
      481 tcagaggagc tcactgatat ttaaacagtt actctcctaa aacctgaaca aggatact
//
LOCUS       KCOD01002308             646 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 257057pyr ultra-conserved element
            locus uce-7036, sequence.
ACCESSION   KCOD01002308
VERSION     KCOD01002308.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 646)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 646)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..646
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="257057pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>646
                     /note="ultra-conserved element locus uce-7036"
BASE COUNT          218 a          104 c          130 g          194 t
ORIGIN      
        1 aatactttta tctgaagact tcaaagtcac atgcaaaaga atatatcaca gtaaacacag
       61 ggttgaaggt tttatagaag aatttctact ggcttttttt cccttcttct ttaaaagaaa
      121 tttgtttact accagtcttt gaaaagcata aaagggagaa aactattaaa acttttacgt
      181 gtaaggaaca tttggagctt tgtgagaagg ctggttttga tagaatatgc gacatgtagc
      241 ccaatgtgag taatagtata tctcaaataa aaatcagtcc atgaatatac ataatccaaa
      301 aggtaattct cccaatctct gaaatgtaat ggagccactc tagatcactg aggcatgaat
      361 atttaccgta ttcaggcttt actgctctcg atctgggttc aattttgcaa attaaaatga
      421 aggctctgtg gatagagaga ttaaagaaga gcatcccaaa gcctgcccgt ttccttggtg
      481 tggtagcagt gatctggtta cccttctgtt gggttatttc tacttattgg agtaggtcaa
      541 aagcaattga gagtggaaaa ggaggtcatt attgggtcac aaccttgagt taaaggctca
      601 ctaaggaaaa caaacacaga gtgaacataa agctgcattt aaaaat
//
LOCUS       KCOD01002309             459 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 257163pyr ultra-conserved element
            locus uce-5856, sequence.
ACCESSION   KCOD01002309
VERSION     KCOD01002309.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 459)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 459)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..459
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="257163pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>459
                     /note="ultra-conserved element locus uce-5856"
BASE COUNT          133 a           57 c           83 g          186 t
ORIGIN      
        1 aactctaacg aagaggcagt tttaatgact ggtgaagaga tttatctctt tgtatattaa
       61 atagctgtaa tgtagctacc agaagcttga ctaattgagg tgtgagttct gactcaaatc
      121 tttttcatga tgattttgaa ataattggat tttaaaggta ttaaagtatt tttgttttgt
      181 acaagagttt gttgctctgt ataactcctg tatgcattgt atattgcaat ttattactgt
      241 cagagatttg tagacagttt cttattttca tattgaatca tgttactttt gtaattcagg
      301 taaacagctg ggttaattca tgtttaccct ttgaataaaa ttgtaagggt aaagttcatt
      361 tttgaatgca agttgccttt attataaaga ttgagttagt cttggttatg taacttgtct
      421 tgcatgacaa cctcaactaa ctttacatgt cagcttatt
//
LOCUS       KCOD01002310             654 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 257272pyr ultra-conserved element
            locus uce-5821, sequence.
ACCESSION   KCOD01002310
VERSION     KCOD01002310.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 654)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="257272pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>654
                     /note="ultra-conserved element locus uce-5821"
BASE COUNT          224 a          121 c          116 g          193 t
ORIGIN      
        1 atttgcaagc catgaaagag tatcaagaaa ttttcttttc ttaggtctac taacgtgaat
       61 ccattaagaa gtccacatgt ctttttttaa aacaagttca tttaaaagca gacttttaga
      121 agtatgcaat aaatttgaga aagacatttc cagcacaaga tttaagctca gccctttagt
      181 tattatatgg aattgttaca agtcaacagt aggtggttta taaaatgtaa ttttatttaa
      241 tgttactttg ctgttacaga gggcttttca caaggctttt ttgggactac aatcaatgat
      301 tagcaacaca caatagtggt ccaaactctc taacaatcac tggacaaact tgacaccttc
      361 tcacatgtgc acaaacctgc atggaaaagt actaaatttt atacttggac atgtgaactt
      421 caattggttt tcccattcca gtgtatcgag aaatgacatg cactgccaaa aagcactgcc
      481 tgtactccag cagtaacatg ctgctaaagt gaataccaga actacaaagg caggagtgta
      541 agtgaacttt tattgggaag ggatatcaac ttaaacagca gcaactgaag attaagagaa
      601 gcccctgttt ttgaacacac aagcttctgt ataacatgat acgggaagca actc
//
LOCUS       KCOD01002311             646 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 257382pyr ultra-conserved element
            locus uce-4944, sequence.
ACCESSION   KCOD01002311
VERSION     KCOD01002311.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 646)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 646)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..646
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="257382pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>646
                     /note="ultra-conserved element locus uce-4944"
BASE COUNT          183 a          111 c          111 g          241 t
ORIGIN      
        1 aaatgcttta ctcatatctt gcagactttt tttagtaagc tttggtaata tttctgatca
       61 gcaaactaaa gcccatggtg aaatgtaagc tttctgcagg attttgctca tagtgttaca
      121 tgtttgaaca aagatgcagg attgcccttt tctgttaaat gttcagtgga aaattgcatc
      181 agatcactta atattgcagt ttgatatagt gtctttttgt gccattgagc caggactttg
      241 gaacataatt gcccagcagt attgatttaa ttgcctaggt ttatttgtgg actcctaatt
      301 attgactgga ggtaaattta atggagaaac ctttatgaag actgggaaac tgctgctgtt
      361 gctgttatac ataatgaact gcatcatatc cctttagaac attcttcaag ctaattttat
      421 tccactgtga cagtacgata acatttaaaa tgtcatagac attttatttt tattactgac
      481 atacgccatt ttactgctgc actagaaact gagcgaagta ctggttgctt tttactgtca
      541 ttttatagat tcctctaaag tggataaagg ataccacacc tgttttcact tcatctgtac
      601 tttattttcc ttattacttg tatctgccag ctttacaaga atatta
//
LOCUS       KCOD01002312             505 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 257493pyr ultra-conserved element
            locus uce-2565, sequence.
ACCESSION   KCOD01002312
VERSION     KCOD01002312.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 505)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 505)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="257493pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>505
                     /note="ultra-conserved element locus uce-2565"
BASE COUNT          150 a           87 c           92 g          176 t
ORIGIN      
        1 ggcaagtatc tcctgacaac taatttgata gttctctatc aggtaaacca tttgtgaata
       61 catcgattct ttttattttt cagtgttctg tcttcactgt tcccaggttt tctctgaacc
      121 agttgggcaa aaattgattt ttatttgttc cactggcctt gtggaaaatt agcttatgaa
      181 ctggttttta taggaagact caaagcacag aaaaggttga aaaataagcc tatagcagtc
      241 aaaattgttg tctgaaatgt cttcagactg gaaggctgaa tttattgctc aaaacaagta
      301 ctagcattgt ggaggtgtgc agtcctgctc attatcactg gaaaaggggg aaccaaaaag
      361 cacagtaaaa aattaaattt taataatgct agtgatattt tctaaatcct tcttgacaga
      421 aagattctca ttatttttat ctgtctcaga gtaggctctt ttaatgccat ctcacaaatg
      481 gccttagcca tgattgtttt ccttt
//
LOCUS       KCOD01002313             391 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 257711pyr ultra-conserved element
            locus uce-2866, sequence.
ACCESSION   KCOD01002313
VERSION     KCOD01002313.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 391)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 391)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..391
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="257711pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>391
                     /note="ultra-conserved element locus uce-2866"
BASE COUNT          111 a           98 c           72 g          110 t
ORIGIN      
        1 ctcctgctgc actcactact tttccttaga ccctgacaga gaacaaaaag gtcagttgta
       61 ccctcagttg cctttggagc ctgctgtgct ctgtgtttat caaccaaact aatctatccg
      121 agttactctg ggcttcagag aaaccactca tctgctgctc tatgcccctc ggtcccccga
      181 ggctgtgctg atggcatctg gcgcatttcc agagaacaga agatggcaca aagctgccat
      241 taaaatcaat tacatgggtc aatgttttta ttagaatctc tctcaaacta agtcatcagg
      301 atgacactca gttatttccc tgtgaccttt ttgtgtgtga ccaaaagaca ctattaaaaa
      361 aattcaattc aagtccgaaa gacaaaagaa t
//
LOCUS       KCOD01002314             531 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 257819pyr ultra-conserved element
            locus uce-4066, sequence.
ACCESSION   KCOD01002314
VERSION     KCOD01002314.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 531)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 531)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..531
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="257819pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>531
                     /note="ultra-conserved element locus uce-4066"
BASE COUNT          180 a           86 c           93 g          172 t
ORIGIN      
        1 agataccccg tggatatcag taagatagag aaatcaaagg ccatatttgg cacattacaa
       61 tgcaagctaa gtggatgagt gtcaccagtg gacatgtaac ccacaacggt ttggctacct
      121 ccatgaatga ttaattaaaa gaaaaaatag ttaatcaaga taaacttctg cacctagcta
      181 acagaggact gaaagtttat catgtctaaa tatgtttctc atacatttac tgcaaattag
      241 tttttgaaag tgaatttcaa ggtctactga ctctgaggtt cactaactca gttttcatta
      301 agttttcaca aatgatctac tgtagcatta ttcttttata gtagtggaga tttaaggccc
      361 agtatgaaaa gcaattatac tgtcagaaaa gtgtattttg acttattaaa aatttgaaag
      421 gaaactattt attttggtgt tcatttggag tgcatgttga cagtgttaca aagaaagcat
      481 tttctatctc tcaaccttcc tcttgaaaac ttgagataac cttacttagc a
//
LOCUS       KCOD01002315             706 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 257929pyr ultra-conserved element
            locus uce-1562, sequence.
ACCESSION   KCOD01002315
VERSION     KCOD01002315.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 706)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 706)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..706
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="257929pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>706
                     /note="ultra-conserved element locus uce-1562"
BASE COUNT          268 a          128 c          112 g          198 t
ORIGIN      
        1 tccaactgcc tctttacatt agctaaatga agtcatcagt aaacaaaatt ggaagaaatc
       61 ttaacacaac tgctgtaaac aactttaaaa gttttatatc ccgaaagatt aaaagtgtta
      121 gaagactgtt cagattcact ggagacgttc accactgata aagtttatag tcaaaactct
      181 ctcatctcac ccaaactgat actggtcaca gcaaattata atcaaagata gatttcttgg
      241 agggtgataa taccattaga tttaaggaat taaaaataca tgaaactttt gagttaatga
      301 acagggtcct taactgctca tttaattcaa acagctgttt gttaatgccc taagcagtgt
      361 cataaactgt gaaaatactg ttgagtgcaa gacactagtt aatgctataa agcaacacat
      421 gctctaatat taaaaggatt taatgggatt aatagagaat aaaacattaa ctccctatta
      481 tgatgttttt gggacccaag ggcaaattct ggctaaaaag gactctggtt ctaaaagcac
      541 aaaaagtaaa ctatagcact gtacagcaaa tcatggcaat tttatgctcc tgaaaaaaag
      601 tggaaccctg ataagatcac atctgttcca atcacagact ggataaaatc actgtttact
      661 aaagtcctaa ataactaaat atgtggaacc ccaacaagat cccatc
//
LOCUS       KCOD01002316             379 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 258036pyr ultra-conserved element
            locus uce-3110, sequence.
ACCESSION   KCOD01002316
VERSION     KCOD01002316.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 379)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 379)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..379
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="258036pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>379
                     /note="ultra-conserved element locus uce-3110"
BASE COUNT          122 a           60 c           79 g          118 t
ORIGIN      
        1 taagacaagt tatgtttatc agtagcttta actttagggc atctacaaag ggactggttt
       61 gtcagcagaa gacttataag tctcactaac agtatcaaag acatgagggg tctctcaatg
      121 gtaggatgct agagttgcac actaaagata gcagacacat gcttcatgga agtagcacta
      181 ctgaaatata aacaagcccc cttcatccag acatttttgg ttatgtttac agattaaatc
      241 tcaggatgtg tatattagat gttcttgttt caggatatta atggcaaaat gaacctgttt
      301 ttgatgttta agtcacatta atgtctgatg gactgttaaa atgttaaagg gtacaccaga
      361 catgctgtag tatgtgaca
//
LOCUS       KCOD01002317             404 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 258143pyr ultra-conserved element
            locus uce-2386, sequence.
ACCESSION   KCOD01002317
VERSION     KCOD01002317.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 404)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 404)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..404
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="258143pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>404
                     /note="ultra-conserved element locus uce-2386"
BASE COUNT          127 a           93 c           62 g          122 t
ORIGIN      
        1 acagacttgg atatctttat gctcttagaa gaagttaaag gaaaagggat ctcaacactg
       61 ctaaaaacac acgcaggaca cggcttgcag atattctgcc gattacctac agtcaaaggc
      121 cctgttcctt gcacaactgt attatttgat tgagaatatc atgcatgtag aactaaaatc
      181 acctataaaa aattagtatt tagaatgagc gaagcatatc attccacctc actctaattc
      241 atcacacctc acctgcttgc caacattttt tattgccagc tgttcaggtg tcatcttatc
      301 ttcttcttca acagcctgtg aaagaaacac agaaaaggtc agtgtttcag atttcgttta
      361 cttttcccca agccacagat tctcaaaata caattctgtt cctt
//
LOCUS       KCOD01002318             823 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 258244pyr ultra-conserved element
            locus uce-1383, sequence.
ACCESSION   KCOD01002318
VERSION     KCOD01002318.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 823)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 823)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..823
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="258244pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>823
                     /note="ultra-conserved element locus uce-1383"
BASE COUNT          229 a          150 c          157 g          287 t
ORIGIN      
        1 cattaaaagt tctctgcctt cctgttagct cagccttgcc catatgacac tgatttacat
       61 gcttgtttac agtttatgag gaagaataaa atgagcatac tggcaaactt ctcattttta
      121 tagtgccagt tgtcatgcta gcatcatttt caatttactt acctctggac agtcctctta
      181 tctggtgcta attgttttaa ctgcttaaaa tttaaacatg tggagatcac cttctcccag
      241 attctaattt tagagaaaga gctgaaacat ttggagctga acacactgtc cctgtttgct
      301 atgtaaagta tgcctcattt ctttgatctt gagtaataat aattctaggg agttatactg
      361 ttttcatatg cttcaaagct gtgtcaaagt tttgctgctt aagggtactt ctttattcta
      421 ttggctcttg ggtactgaga tgacaggtcc tctgtactag gtgcaggctt tttcaagtca
      481 tagccttcag caaaacatca aattaccaaa tacagggtaa catacttcta cacaaatgcc
      541 tttcctgtag atatattata ccatatatat taaatacttt agtgttacac ggtacatttt
      601 atgtgcaata gaaagtgatg gtttgaggta gccttagggg tacttttttc cacaagcaga
      661 aaaagctagt gtataccgta tcaagtatgg tttttacagg actttctgcc cgaaggcctt
      721 tgtaaataag taatgatcaa cagattggct gtgggttttt gaaaagcatg cctgtgtcag
      781 tttgcatgat gggggaagat tttcaaagta cagcctgctt tca
//
LOCUS       KCOD01002319             442 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 258351pyr ultra-conserved element
            locus uce-5754, sequence.
ACCESSION   KCOD01002319
VERSION     KCOD01002319.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 442)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 442)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..442
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="258351pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>442
                     /note="ultra-conserved element locus uce-5754"
BASE COUNT          111 a          110 c           94 g          127 t
ORIGIN      
        1 gtgaatcacg acttccttgt gggatgtggt accttttccc actgttgtct ccatttccca
       61 taatgccctt gacctcggag gtcacctgtc attggaagat gaagctctga ataaacagag
      121 aagaccctgt ggtgtctctt atctctcagt tttgcctcaa atctccgggt ggagttttaa
      181 attattcatc cactggtgct ctctgcgagt tacacgtctc cgtcacctat ttgcttgccc
      241 atttgtgagt gaaggcggta tccttgggaa ccttatcaga gatcacagat tcaggctcca
      301 gaaatgaaat aaaagaggaa attggctgta ttagcataag aggagtcagc ctggagttga
      361 atacacacat cacccagaag caccactggc ttctcttatc agtaacgtct gatcaccact
      421 tctttcaggc acacatgcac ca
//
LOCUS       KCOD01002320             687 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 258455pyr ultra-conserved element
            locus uce-5305, sequence.
ACCESSION   KCOD01002320
VERSION     KCOD01002320.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 687)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 687)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..687
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="258455pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>687
                     /note="ultra-conserved element locus uce-5305"
BASE COUNT          240 a          103 c          115 g          229 t
ORIGIN      
        1 attagctgaa tacattaaga gaaggctgga acacagattc cataaagaga gcaaatgtat
       61 gtttaatcct ctgttctttg cttacagatt accctttcag aatgagtaac cttattttct
      121 ttttaaatat ctatttttga gctttgcata gcaaagcagg gtttttttta tttccttccc
      181 actgttgcaa aagaaattaa tttgttgcta gttgctatgc attggcagga tttctgcata
      241 aagaatgtaa gccatctatc tttgtattca agatatagtt aatctggcag ttaaaatact
      301 ttggaaacat tttgatgact tatctggaaa agtagctttg cattttcaaa gaaaactcag
      361 aactgtattg caagagaaag ataaaagata tatgaagtgt ttgttccaag cgatactatt
      421 catttaaaga tcagaatgta accccaccca agcaattatt gtggaaaaac aagacaaaaa
      481 tccttataca gctttctgac acggtcttta tttgggaaac aaaataacta tattacagtt
      541 atagtctaat ggattgcaag ctgttttatt agagtcagct gaatcctggt tagcataaaa
      601 aagaactctg tttgctatca agaacacatt tacattaata tgactttgac aaagtaaaat
      661 aaaatcgcat taagatgatg taagtag
//
LOCUS       KCOD01002321             657 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 258564pyr ultra-conserved element
            locus uce-3720, sequence.
ACCESSION   KCOD01002321
VERSION     KCOD01002321.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 657)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 657)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..657
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="258564pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>657
                     /note="ultra-conserved element locus uce-3720"
BASE COUNT          205 a          111 c          124 g          217 t
ORIGIN      
        1 cctgaacagg ttcattcctg taaggaaaat cagtttttaa ataggtggtg gaacatgata
       61 tatgcaaaaa aggcaaatga agcaccttaa ttagactttg gtttaatagt tctttgacta
      121 acctggatta tgacatataa tttgacatta cacatcccaa ttaaatcaaa acctctttca
      181 gtagcatctt aaatagtacc cactcatgca gactttcaca ttaaagtaat tatttgtaag
      241 aacagaaaga aagtttactc ttcctcttta tagtgaaaac aaatgtgttt ttctccagaa
      301 tctgccaagc ctgtgtttta atgatttaac agatggagtt ggcacatgtg aacctggaag
      361 atgcatctgt ctgatttttc cagtctgagg attttttaac tgcattaatg gcacagacaa
      421 tggtaaaata tcacctcccc aggctgcttt gctctcctaa cacataatgt cttttaaggg
      481 tgataggaga ctggggtgag caaaaggcca gagaaatgag gatttgaaag tttaatattt
      541 tctgtcttca ctgcattaag cttttaaggc tttcactttg aatttcttgt gtatatggtg
      601 tggaaacaga aattctacgc aggcaacatt gtgtgatctc gggttctgtt aattaat
//
LOCUS       KCOD01002322             467 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 258673pyr ultra-conserved element
            locus uce-5311, sequence.
ACCESSION   KCOD01002322
VERSION     KCOD01002322.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 467)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 467)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..467
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="258673pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>467
                     /note="ultra-conserved element locus uce-5311"
BASE COUNT          153 a           81 c           80 g          153 t
ORIGIN      
        1 ttttgttcag ttttgaaata cctgcaaagg gcaacctgaa actgaaaaat ggagtaagtg
       61 caatgaggcc tttagaataa ttatgtgttg ttaattgaag aatgttaatc atgtcatatt
      121 aggagcaaga gagggttaaa ttggtaaaat ttcaattcac ttaggcctta tctcttgttg
      181 gaatgaacca gatgattaat ccttaatatt cttcagggat acagagaaca tcagcaatta
      241 aattaacaac tacaaagttt atgctcagag attcaaaaat gaaagacaga aacactttaa
      301 tttttcacaa gttgttacct taattatctt cttattgttt ctgtctcttt tccctcatta
      361 caaaaacaca cccctcagta ttcacggatc cctttaattt gctgtagctc agcaactgtg
      421 taaggaacgt catcggcgct gcagaagtca taaatcttac tttgtgc
//
LOCUS       KCOD01002323             524 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 258781pyr ultra-conserved element
            locus uce-6140, sequence.
ACCESSION   KCOD01002323
VERSION     KCOD01002323.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 524)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 524)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..524
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="258781pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>524
                     /note="ultra-conserved element locus uce-6140"
BASE COUNT          157 a          105 c           83 g          179 t
ORIGIN      
        1 gctttaatcc ctgagtactc acatccctct tgcacttctg tgcctttggt taactacaga
       61 cagtaactat gagtccctta gtgactaaaa tgccaaacca cacacgacac cctctttgca
      121 ctccctatta aaattttaca ggtcaaaaat ccaaaaccca cttaataaaa attgttcttc
      181 atcgtaagtg acaagagaga gcaggtcaat ctatggaata atggtgcagt aattagaacc
      241 tttgtagttg ataaagtgtg actattaatc aatgtttggc taattaatca atattttaat
      301 cattagacct tttaaatttg ttttaatgag catttcctct aattcccttg atcctgttgc
      361 ttccaactcg tctattatct ctgttaaaca gcaaagtagg ttcatatacc cagattatgc
      421 tgtggttttg taagcttgta gtttatggca tgaatatttc tgactgtgca aattcagatt
      481 cttgtccatg tttgcattaa gagagagaat gagccttcac aact
//
LOCUS       KCOD01002324             588 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 258890pyr ultra-conserved element
            locus uce-5220, sequence.
ACCESSION   KCOD01002324
VERSION     KCOD01002324.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 588)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 588)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..588
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="258890pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>588
                     /note="ultra-conserved element locus uce-5220"
BASE COUNT          197 a          126 c           95 g          170 t
ORIGIN      
        1 actgtagtca cttacactct tacaaaacat gtgataaccc cgatagctta atattcagca
       61 tatataattc atttacatga tatagcactc ttgattgtgg ccctaaaaca gtttttattc
      121 atatctagca gctttctaga tcaaccacaa aaacttctac agccagcaat caaactacgg
      181 aaccttcgga aattaaagac ccacaatatt aaaatacaca gaacaaaata tctgaggtat
      241 aagataaaaa atgtaatttt tcctcttttt agagttgcta aaatgatgca ctactgcatg
      301 tattgcaata cccaggcctc ggaaagcttc ctttttcccc acattggaag gtttttatgg
      361 ttttgtcatt tagtatggag caaaacggct gtatccccct cggtatatac tagcctgtaa
      421 tgaagaaaga acgagaccga catcatcagc atggctccta gtcttggcat cagtcaaggg
      481 tgcaaaagca ttctgaaaca aagcaatttg atggattgtt caacaactag atttgcaatt
      541 tcatttgaca tgactactgc cccatcctaa aaggcaagca acgttcag
//
LOCUS       KCOD01002325             774 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 258999pyr ultra-conserved element
            locus uce-182, sequence.
ACCESSION   KCOD01002325
VERSION     KCOD01002325.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 774)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 774)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..774
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="258999pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>774
                     /note="ultra-conserved element locus uce-182"
BASE COUNT          218 a          151 c          162 g          243 t
ORIGIN      
        1 gtacttcata atatttttgt ttgtttggaa aacccatttt acttccagat taaaatgtta
       61 ttgatgggct aagtcaatgc aatgaagtct cttattatga gaacctgaag tacgcaaggg
      121 attaaacatc tttcttctag attgaggatg tgggggggca catggtaatg ctaaaaatgt
      181 ttgaggctgc aaagattaaa taaaggaaca tatcaatttg gagccagtga attacatcca
      241 gctgcgacag tgaattaaga accgattaat ggctaaagct tttctccagt ttggatgccg
      301 aagcaaactc attaagcttt tagagtagct ataatgtgtg tactgtggga actgttcaat
      361 gctattcagg agactttaac tgtaagctca gagcatttcc cgcagagctt ctgatgctat
      421 tttctttata taacatgtgt gcctgaaaat ccagccaaaa acaagccctt tgtttttcta
      481 ctttgttgtg gtctctctca gctttacgtt tcttgaacac aggtaaataa actcataatc
      541 cagatggtgc agcagatgtg agagcagcac tctgaaatca acagacagtg ggcaatactt
      601 tccattttct cttttaaacg ctaactaata tgtaattcgg aatctccggt gtagttagca
      661 tctgctccct tcggccagcc aaaggttaca ggtgttcctg atgtcatttc acagtaaggc
      721 gtgggcctgg cttgtgagtg agtgcccagg ctctaatctt tccctaccac ctac
//
LOCUS       KCOD01002326             563 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 259109pyr ultra-conserved element
            locus uce-7069, sequence.
ACCESSION   KCOD01002326
VERSION     KCOD01002326.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 563)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 563)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..563
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="259109pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>563
                     /note="ultra-conserved element locus uce-7069"
BASE COUNT          150 a          114 c          173 g          126 t
ORIGIN      
        1 tgtgggtgct gctgaagagg aatcagaagc aggaacaaca agatggggag gtagaaagat
       61 gctctgtggc cataaatatc tgtcatcacc aaaatagtgt tgctcacctg caccagcaat
      121 ggaaacctgg ggatacagca tctctgtcag gggcagaatc catggaggga caccgtcggg
      181 tcacgctgac tagtagggct cagcgatcaa acgtgtcaca cctgtcttgg ccacgggtgc
      241 aggtgttcta ggtcagctct cgctgtggtt atcaatcgct gacagttgac agtttaattt
      301 tacaccacaa gtacctcatt acttgtgtag gcacttgaag aacatgtggg cactgggttg
      361 gatcagtgat caatgacaaa ggttgcgcag ggtgcaagtg gtagcagtaa aagtgaaggt
      421 ctccgtgcat gagttggcag tggtggggat acatgacaag gggagtttag ctgacaaaca
      481 gtctgtcagg gctggaagaa tggaggctcg ccggagagct ggcgctccat tataaaatac
      541 agctcgccat ttaaaggcgg ggg
//
LOCUS       KCOD01002327             687 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 259219pyr ultra-conserved element
            locus uce-6892, sequence.
ACCESSION   KCOD01002327
VERSION     KCOD01002327.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 687)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 687)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..687
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="259219pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>687
                     /note="ultra-conserved element locus uce-6892"
BASE COUNT          206 a          139 c          147 g          195 t
ORIGIN      
        1 tgcctttaga gggctttgta tactcatttt tttcccctag tccaataaaa gatattagtt
       61 cttttcccta agcaaaatcc ctctcatgaa tcaggcccta cacttgcaac tagtgtgata
      121 ttgctggcca ggtttcaccc cagtaaaatt ctaatctata ctttgtcttg cagaattaag
      181 aagaaaatgc atatcagcag aatctcctct ctactttatt tcatttataa attacgagaa
      241 tgatgctatt atatattatt aatttctgct gttctccaac tcggctgcag cagtgagctg
      301 cggatgttgg aacggtgtaa ttatgttcta gtagggcagc catccgtttc ctttcaaaaa
      361 tttacaggat tcttaatcat gctgctcatt tgggtgcgca gtagcgagga tggcgaaaca
      421 caaacagggc acgttcgttt acacaggaac acctgcttag catgatagca gatgtcagtc
      481 agcaagcaga acacaaaaga aaaatatcaa caacagcaaa ctagaagcag ttttaactcg
      541 gtacggagat ctcttgtctg ggggaagcca aaggaagggg atgagccttt gcaggtcaaa
      601 gcagaggcat ggtgatgatt tggaaagttt cagacaatgt tccgggtcaa caaatccaag
      661 acaaactgct cactggatga tgggatg
//
LOCUS       KCOD01002328             353 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 259318pyr ultra-conserved element
            locus uce-1393, sequence.
ACCESSION   KCOD01002328
VERSION     KCOD01002328.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 353)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 353)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..353
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="259318pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>353
                     /note="ultra-conserved element locus uce-1393"
BASE COUNT          102 a           66 c           91 g           94 t
ORIGIN      
        1 caggttgtac aattgttctc tggtgaggtg gatgttatat gtgggccctc tcttttgacc
       61 tgttgactgc agcaaatggt caatctcgtc acgcaccgct gcaagagctt ctgggtgccg
      121 cagaagataa tacatggccc agaatgtagc tggaatcgtg tttcccacag aggcccacag
      181 gaaggcaaaa tgatgtgctg ggagaaaata agtgaaaagg aagattaata gcgtttatta
      241 cactgattag atttgcagtg tgctaattaa aagatgttag gacacagacc cagccaagga
      301 tcagtgaatg ctaatgagga ccaataggct tctgaagtct aattttctgc tta
//
LOCUS       KCOD01002329             334 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 259420pyr ultra-conserved element
            locus uce-4169, sequence.
ACCESSION   KCOD01002329
VERSION     KCOD01002329.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 334)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 334)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..334
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="259420pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>334
                     /note="ultra-conserved element locus uce-4169"
BASE COUNT          123 a           74 c           66 g           71 t
ORIGIN      
        1 ttccccttta aagcaattac attttggtta ataccgagcc acaattgtta gcccaacacc
       61 cacacaatct gtacaagcta cagcaaaatg aatacaccca gcagagccct tatctgttgt
      121 ggcaccaaca gaaaggggac tggccaattt accttcatca gcctcaatag cctcaacagt
      181 agctgaagag aagaaagggg tagcaaaacg aatgagaaaa atgagcagag gatttcaact
      241 ctaagaacaa gtcagtgaac agcaaaggag ctatactaat gttactgtaa gtgctggatt
      301 ttggcaaaac agacacacag agaaatgttt acac
//
LOCUS       KCOD01002330             506 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 259519pyr ultra-conserved element
            locus uce-5640, sequence.
ACCESSION   KCOD01002330
VERSION     KCOD01002330.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 506)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 506)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..506
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="259519pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>506
                     /note="ultra-conserved element locus uce-5640"
BASE COUNT          134 a          134 c          140 g           98 t
ORIGIN      
        1 cagcagtttt gctttcacaa cagaggtccc accaaggcgc tgtatcttga cagagtgaaa
       61 acaaaacact cagcgatgcc attaacattt ctgagtcata agggattaaa agacttgggc
      121 ccggggcaga tgctgggaga gccctcggca gaggagctca gcgcccgccg caggctgcag
      181 ctgcgaggga ttgacaccgc tgacggcgga acccggctcg ggagaaactc cgggcacagt
      241 tccggcatcc gaaataaatt aaagtaaaca gtgttgctct ctctcatcca ccctgttagc
      301 agcctctcgg ttgagctgga gaccacacac ccagaccaca cagcaccagc tgaactcact
      361 cgcacgcaac atctagaagc tgtcactctg ctgaggtatg aggagggggg ggccggagtg
      421 cgagagaaaa gctgcttgct ctctcctcct atcattacag ctggttatgt tttgtgcgaa
      481 agaagggagg gataaggacc tataaa
//
LOCUS       KCOD01002331             555 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 259626pyr ultra-conserved element
            locus uce-2893, sequence.
ACCESSION   KCOD01002331
VERSION     KCOD01002331.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 555)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 555)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..555
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="259626pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>555
                     /note="ultra-conserved element locus uce-2893"
BASE COUNT          168 a          113 c           71 g          203 t
ORIGIN      
        1 attattatta ttattattag tttatgtatt tttactgcta tttttagtag ggaaaagtct
       61 taactgtttt tataatttga gaacctttaa tgaaaatgta aatattaata ctataattac
      121 tttttttgta acttgcatgt tgaagaagtt gcagcttagg gtttgtgaga ttgtcaatgt
      181 tagagttctg ttctttcttt ttgttgatgg gcatgaatat gctcatttgt ttttgtatat
      241 tgcccatccc ttccttacag ccagaagctc taatgctgct agatcactcc gtaccgccct
      301 tacatggaca tggcaactga cttacacatt cactcccatc atcttcatct cctgtgtagt
      361 acactcatag aacactccca ctccatccac cctaagcatt ttttcttccc ataagttccc
      421 cttcaccacc cctttcttta gcattgttaa aattttatgt gcagtcatcc attccttaaa
      481 acacacacac acaaaaatta tagaaagaaa atgtttaaaa aaatatatat caaattgacc
      541 aaaaaagcaa caaac
//
LOCUS       KCOD01002332             328 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 259727pyr ultra-conserved element
            locus uce-2041, sequence.
ACCESSION   KCOD01002332
VERSION     KCOD01002332.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 328)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 328)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..328
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="259727pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>328
                     /note="ultra-conserved element locus uce-2041"
BASE COUNT          113 a           45 c           62 g          108 t
ORIGIN      
        1 gaattagtca ttctaaatca tgcagctgtg gtcgaaggga gctcttctaa aaatcattaa
       61 acaatcatgt attcctattg atttattcaa aataccttga gggaaagcag attaaacaca
      121 aggtaaaagc aaactaatgc agattaaatg gatgaaggat gggccgatag ttccctaggc
      181 agttttttta ctaatgagag gaaaattata tgtacactat taccagtata aaagggtcta
      241 ttagaggtct tttgcttgac atatttatgt atttcaaata ctaagtagca cagtgaatta
      301 ggtttactct ggacatttgt tattttta
//
LOCUS       KCOD01002333             463 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 259832pyr ultra-conserved element
            locus uce-3324, sequence.
ACCESSION   KCOD01002333
VERSION     KCOD01002333.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 463)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 463)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..463
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="259832pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>463
                     /note="ultra-conserved element locus uce-3324"
BASE COUNT          167 a           81 c           80 g          135 t
ORIGIN      
        1 tatttcaatc aaaatacggt caaattgaac ttaaccacag atgtatgaat acagcagatt
       61 tggtattgat attgattttt cagtaaatca tcttaagttc aaatgatcaa aaatcaagac
      121 aggtcaacat caaagaaaca ggaatattgg catggaagca agctctcttg attggtacaa
      181 attaaaagat catttattag tgattatgct gtataatact gccagtgcca aatgaatgca
      241 attaagatga aatgggcccc tgcagctaca ggggttaata aagactgaat tcctaatgat
      301 ttttccatta attatgaaga tgtccacaaa acagctttaa caaagctgtg gccacctccg
      361 acaaatcttt gtaatctgta taaaatgcct cccttaattg acacgttgtt gggataatgt
      421 aaagattaac agctccaaaa tcattactcg ccgaagggta ctc
//
LOCUS       KCOD01002334             470 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 259940pyr ultra-conserved element
            locus uce-6334, sequence.
ACCESSION   KCOD01002334
VERSION     KCOD01002334.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 470)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 470)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..470
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="259940pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>470
                     /note="ultra-conserved element locus uce-6334"
BASE COUNT          157 a           86 c           74 g          153 t
ORIGIN      
        1 aaaacacttt tcccctagta aggaagtctg ataaaaagcg ttctttcatc tagcatttga
       61 tactcaaatg cactttccca ttcacagttg gatggagatt ttttttcaag ttcaacccta
      121 atttatttat cttaaagcag gcaatgtact gtaattttac aataaaggac tcccaatcaa
      181 agcttacctt atccagaggt aattaataca aagattgttg aattaaagat gtgagtcttg
      241 acactttggc ggggggtaag ggacgtggtc tcaaaggcac aaattatgcc tgaaacagac
      301 caattaacac catgtatctt cttttatgtt aacttcaatt aaggtttctt aaaattttta
      361 aagttatttt cttctttaca atctcagaat gtcagaaatg tacatcaaag aaaaacgctt
      421 cagtatgaac accataggta acgctcattt gcacacaaat ctgcatattg
//
LOCUS       KCOD01002335             484 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 260043pyr ultra-conserved element
            locus uce-1653, sequence.
ACCESSION   KCOD01002335
VERSION     KCOD01002335.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 484)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 484)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..484
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="260043pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>484
                     /note="ultra-conserved element locus uce-1653"
BASE COUNT          175 a           81 c           85 g          143 t
ORIGIN      
        1 aaaaaaacaa cttactgaat aatatgccaa accacatgtg taaaggaata aaatggaata
       61 gttaacattc agctccatgc cattcatttc cccctaaaat gtaatgataa ttagatgggt
      121 cataaaatgc tcttcttttc attatgactg atgaaatgca ttaaagctga cagggtatta
      181 cctgacagta attaggtttt gtcatgaatt aaattatttg aaagcaggct atctccccaa
      241 tcatgcaatt tacagcaagt ttttttttta atctgtgcta cagacgagag aaagagagat
      301 agaaaatagc agtttttctc ttcataatca tatgaattat tcacagaaaa aaatcgtgca
      361 gatgaagagg cttgccactt aatgtactgc acagatgtga tcatcagcgg ttgccgacaa
      421 tgaaatatac aagtgcacac aaaagtgatc tggtgaacaa gaggtggaat ttaatcatct
      481 tctc
//
LOCUS       KCOD01002336             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 260154pyr ultra-conserved element
            locus uce-7215, sequence.
ACCESSION   KCOD01002336
VERSION     KCOD01002336.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="260154pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-7215"
BASE COUNT          162 a          130 c          135 g          213 t
ORIGIN      
        1 aacaactgtc atgcactttt taactcatga gcacaagaga cagcggaaat gtaagctggg
       61 ctatgatttg gggaaggtat ctgtgaatgc agaaaatatg cagaagagca actgatttcc
      121 atttgctgtc ttagcagaat gatgttctct gtattcccaa caataaaagc aacagtgagg
      181 aaaataagtc agctcccctc tgcccaagtc attatttcaa gtttctcagt attaaatcta
      241 aaggttcatc aactcacatc tttacagctc tgtctttctg tatacaggac cctgtctgcc
      301 tgtttcctct attgcactat tttgtttgta ctactgtaat cattttgctg gcccagatct
      361 gtgtgggtgt gctggcagct ttacaacaaa gttacatggg aactgagtta aggttgaata
      421 tttattagaa gaagccatct ggcgtcaggc tgtctgtacg gggggcttat ttctttagta
      481 gtctctcctt tttcttccta gctcttccgt ttctcattta cgtgctgtga aaagtggaac
      541 acacatcttg acatattgat ttgattcttg atatttatag caattaacgc tcatgtgact
      601 gttgcctcag ttcccgtggt ggcagggatg ctgctgagct
//
LOCUS       KCOD01002337             471 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 260261pyr ultra-conserved element
            locus uce-2297, sequence.
ACCESSION   KCOD01002337
VERSION     KCOD01002337.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 471)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 471)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..471
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="260261pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>471
                     /note="ultra-conserved element locus uce-2297"
BASE COUNT          147 a           77 c           88 g          159 t
ORIGIN      
        1 ctttttgact attaaaggct cattaaaaaa attaaagtcc ccacaattta caatattttc
       61 cattgaaata gcatgttaac acatttcttt aatcagtgtg taactgtcaa gggaaagaac
      121 aattcatcta gtatatgcat acattaggaa aaaaaattat cagatttaat tttatttgtt
      181 ttatattcag ggcgaaggaa ttcctgcagg gaaatggtta atctattttt aactaaagct
      241 tacttttgta atctatccag tgcttagagt tctgtcattg atctatgatt tatgtgattt
      301 aaaccacctc ttggctgtaa cattggtttc tatccaagat gctgagctga atactaatta
      361 cgagatcaaa tttatgctgt tgggctaagc agctgaagga gctttccatg caggactccc
      421 ttaaaccacg ccaccgttga gcattagcgg aatatttggg agggggatgg g
//
LOCUS       KCOD01002338             454 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 260369pyr ultra-conserved element
            locus uce-2257, sequence.
ACCESSION   KCOD01002338
VERSION     KCOD01002338.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 454)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 454)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="260369pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>454
                     /note="ultra-conserved element locus uce-2257"
BASE COUNT          153 a           71 c           91 g          139 t
ORIGIN      
        1 tgttaagcag tcctgaccag tgcctacata catatggcat tgtcccatca ttttcaaatc
       61 aatatttttt aaatagaaag gtaaacagag aggcaaagaa ttgactgttg agaaggttct
      121 tagaaaattg aaacaggagg gaatagcatg cagagaaaaa tgcaagttca cacaccaaag
      181 ttagaggatt tgggattaat tgaaatcctc aagtggtgca tggtaagtga ctgcctattt
      241 agagccaata gataggtttc cgtgaggtta aggaagcgaa aaatcccata cgaagctagt
      301 gagatgttaa attctaatta gaagtgttaa ttcatttcca atttcatcag tgagagtgct
      361 tttgttgttc tgattctctt tgctacagtg aatcctaagt atcctaactc attttgtccc
      421 aatattattt accacttcta tagggtataa aaaa
//
LOCUS       KCOD01002339             594 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 260480pyr ultra-conserved element
            locus uce-1159, sequence.
ACCESSION   KCOD01002339
VERSION     KCOD01002339.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 594)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 594)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..594
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="260480pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>594
                     /note="ultra-conserved element locus uce-1159"
BASE COUNT          180 a          110 c          121 g          183 t
ORIGIN      
        1 catctgttca gtctactaat tcattacttt tggcatctaa ttacgccctt tatttgcaaa
       61 atttatttcc attatctagt gggttggaag tgcttgaaac atctagaggg acagagctct
      121 ttaaattctc tgaagttagg agatggatgt ggcaagagtg tatagtagaa gaaggtagta
      181 tgagtaggaa gctactattg acattgttct gttgcagcaa ttttagatgg acaaattgca
      241 gttgagaaaa tttcatgact cggtaaaatg agcaatgatg acatctgtgg atgcaggtct
      301 gttcatatct ttgcagagcc tttagggaaa taaatatctc ggaacattcg gtgaagtgaa
      361 gctcactcaa taaatcaacc tgacacaata acacttctgg cacatgagct ctacttctcc
      421 tcagcaccac ctacccctct gtgttcctgt gctaccaaat ggtgtctccc cacaggcctc
      481 taaatcaaat cagagcacac aaatacagtg agaatttatt gggaattggt tttgttcggc
      541 aaaaagatta cttattagat gaactgaaat gataaatttt gaccctttaa gtgc
//
LOCUS       KCOD01002340             541 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 260593pyr ultra-conserved element
            locus uce-3486, sequence.
ACCESSION   KCOD01002340
VERSION     KCOD01002340.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 541)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 541)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..541
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="260593pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>541
                     /note="ultra-conserved element locus uce-3486"
BASE COUNT          163 a          109 c           98 g          171 t
ORIGIN      
        1 cccctgcctt tacaaatact taggaaagaa gagtgcactg tgctttaaag gatatacaat
       61 caggaaataa aatgagatgt tagctctctt ccacctaatc ctttgccatc ccttcaaaat
      121 tactgttgac taacaagttg tgtctctttt ctctgaggca gtgggtgcaa gacaactact
      181 tgagacaaga gaggaacatt tatcctccag gcttctcata cttactcaag cagaaagact
      241 ctgcatgggg agaaggttct ttacagcatt ccacattttt aatgagcttc cttgcaaagg
      301 gtatgggctt tccctttttt cagctaaagc ttctactcaa agagggattt gttctcatta
      361 agaagggaat gttaagggat gatagtttaa ggtgttcgca tactgctgtt taatcacctt
      421 tatgacaaag attaaactat cctaaaaact accccatatt agacagccta ccaaatacaa
      481 gtttgcagtg catttttttt aatctcttgt taattagaac cctttgaaga gtcaatgtca
      541 t
//
LOCUS       KCOD01002341             477 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 260702pyr ultra-conserved element
            locus uce-7895, sequence.
ACCESSION   KCOD01002341
VERSION     KCOD01002341.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 477)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 477)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..477
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="260702pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>477
                     /note="ultra-conserved element locus uce-7895"
BASE COUNT          134 a           78 c           85 g          180 t
ORIGIN      
        1 agtttcattt gagaaaaaac aaatgtggct cttttctgtc aatattttct ctccctgtat
       61 tttgtgttaa actcctgtac agagggactg tgtgttattg ataacgtggg actggacttg
      121 gtggatttta atgtccatgt ttatatggaa catttttgaa gcagcaatta aaataattaa
      181 ggagggtgaa gaaatcttta gcatgcaaca aagatttctg caaaatgtta atttctgtca
      241 aataagtgaa tatatgcaca gatgcctcct gacagaggct gtgatttctg agtgctttgc
      301 atgccaaata acttgtttac cccctcaatg tttgccaagt ttactgtcaa tttacaaata
      361 atttccattt tgctgtttat tctgctgcct tttgatggat atgtcttcca gacttttatc
      421 ttgcatgtag acaaactaat taatattttc ccttcaggca aatatttttt tcttaga
//
LOCUS       KCOD01002342             589 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 260810pyr ultra-conserved element
            locus uce-1642, sequence.
ACCESSION   KCOD01002342
VERSION     KCOD01002342.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 589)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 589)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..589
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="260810pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>589
                     /note="ultra-conserved element locus uce-1642"
BASE COUNT          188 a          112 c           91 g          198 t
ORIGIN      
        1 aatcatcttg cattaaccac ttagataaga aagaatttta tacttgttta cattttagtg
       61 atactccatg attgtatatt taagaaaagg aaaaaagtgc tgtttgcatt gatatgctca
      121 agtcttagaa acccattcaa tttatctatg cagcttttat tagaccagac tgtagactac
      181 aataatagtc aatgaggttt tgtcttgatt gaatttttca gtagaacaca aaagaacctt
      241 gccattaaaa tagtccttta ttctcttgta tgaaggcgaa aggtttttaa agtgttgtga
      301 tgttcagtaa tgagcctcta tctaaattat cattggtgac aaactcacaa agcacttttc
      361 gaggacacat agttatgaaa tgccagagct gccactttct ttcctgtaat tataggctag
      421 cttgcagccc ttcaatgatc atttatagaa cagcctccag tggattactg agaacttgaa
      481 aaacacatac atacctctgc cacatctccc tttcctcgct attgtttacc agtgatatgt
      541 aaaataatag tgcctattca ttccccctac ttaattatgc caatcaaag
//
LOCUS       KCOD01002343             776 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 260918pyr ultra-conserved element
            locus uce-2246, sequence.
ACCESSION   KCOD01002343
VERSION     KCOD01002343.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 776)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 776)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..776
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="260918pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>776
                     /note="ultra-conserved element locus uce-2246"
BASE COUNT          210 a          158 c          180 g          228 t
ORIGIN      
        1 ttgctggctg cttgttaagg tggaggagaa agtgctgcgg gattatttgc ttgccccttg
       61 tcttgcgctg ctcttctgat ttcaaactct tctgaaataa ctcatcgcta aactgggacc
      121 tttcctctcc gttggtcagg ccccgtgtca aaacactccc gactcctggg aagtcagctc
      181 tgctgaatcc cgaggcttgc cagtgccagt cagctgctgt ttgaactaag tcctgaccgc
      241 aaaatcaaaa gtgggtccaa agaaagctgt aaacagtgtg caatgagcca tttgaaggca
      301 gctgatgcct catttggggt gacatgttgt ggctgatgag tgtggatgat gtggggtttt
      361 cgataagtgc ctcatcagta tcctcatcat gatcgtgttg ctcagccacg gcgtgtgccc
      421 tgacttgatt gtaattgcct gaatctgctc ctgctgctca ggagcgcaca gtaatatgca
      481 ataaaacagc aagaagtgaa tgttaaccat ctgagttctg acatggctgc ttgcagttca
      541 agttttccat taaggacaaa aaaatctata tagacataca aatatggata tataattgca
      601 tgtttagaat aattattgtt tgtatatgca ataaactcgt tttataaata atgcatgatg
      661 gtgacacata gattgatata catcttcccc tgacacctgt atacaaatga acatcacatg
      721 ctgatggtgt gagagtagag ggatgaaaag catcaggacc tgattcaaat ttttag
//
LOCUS       KCOD01002344             726 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 261028pyr ultra-conserved element
            locus uce-6298, sequence.
ACCESSION   KCOD01002344
VERSION     KCOD01002344.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 726)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 726)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..726
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="261028pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>726
                     /note="ultra-conserved element locus uce-6298"
BASE COUNT          203 a          137 c          149 g          237 t
ORIGIN      
        1 aaaaaaggca gagacggctg gaggctgggc tgggagaagc ccaccgatcc ctgagtcata
       61 aaagcgtaca atgaaagggc tttattgtct ctcgttaagc agttcataag tgaccccgtt
      121 tatttctgaa tagccatgtt ttgatgactt atagtatatg caaaaacaaa ctttcccgcg
      181 gtgttttttt tctccgtcat gcttttcttt tcaaacagcc agatgatttt aaaaagaaaa
      241 acacccagaa atgataaatc gcgtcgcata gctaatggct ggagggcgcg tttaccaatt
      301 cataatcatt tattcttggt gatgtatgac ccttactctt aaatctcaaa agcttctatt
      361 tgaaggtgta aatagctttc ccccttgcag taaaccttac tgcattagca gtgattgatc
      421 tcctgtacaa ttcgtcccag agtgctattt tagaggggga acactggctt ttggagatta
      481 actggggagt ctgttacata ttaatgaacc taggagatat actaacgttt tggtaattta
      541 gttatttgtg tctatagctt tcgccgttat tttctcttag acccccgcgg ttgttataca
      601 tcgaattaaa aagtggtcct tcagcatcat tttttcagtg gcaactaaat gccatttaat
      661 gtgaaaaaca aatgttgact tgtctcttga aggaagtgtg tttcttggca agacatcaaa
      721 gtgttt
//
LOCUS       KCOD01002345             522 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 261134pyr ultra-conserved element
            locus uce-6280, sequence.
ACCESSION   KCOD01002345
VERSION     KCOD01002345.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 522)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 522)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="261134pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>522
                     /note="ultra-conserved element locus uce-6280"
BASE COUNT          194 a           71 c           91 g          166 t
ORIGIN      
        1 tgtttatttt gaaatttatg atcaaggtgt tatagatcac atccgtgtat gggaatagat
       61 aaaactgtgc tacattgaac tttaaataga aatactaaag aaaatgctac tatatgatcc
      121 aactatcaaa caaatcaaat ctatgtttca tgtgagaaaa tacaatgaag tccaaatatt
      181 atggggaaaa aaaggcattt ttgtttcact aaggtgtaca tgttaaataa tcaaaggatt
      241 caacatgaca atatggttat agatagttat cttaagtgcc ttctgtggtg aggaactgaa
      301 attaagaact tgaacaaaac atgatacatg aaagtgcagg ttctacaaac actgggttgc
      361 ttattaaaac tactttgatc cctcgtttct ttgatatcct aggtcttata aagaattcac
      421 tttcaggggt aaatataggt agttcagaga gactttatga catactgtac atactgagag
      481 acacttttta attacttaat gcagcaagaa aaaaatgctg at
//
LOCUS       KCOD01002346             669 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 261243pyr ultra-conserved element
            locus uce-5573, sequence.
ACCESSION   KCOD01002346
VERSION     KCOD01002346.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 669)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 669)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..669
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="261243pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>669
                     /note="ultra-conserved element locus uce-5573"
BASE COUNT          206 a          109 c          118 g          236 t
ORIGIN      
        1 gggaatactg acacgtcaat tccataatcc atatttttat tttcatcctt ccagcatttt
       61 aaaggttaat tatgctttcc tgacttgtag cttccttttt ggctgtgata cacagtgcca
      121 gaaccatgta gaataaatgg ccaattttgt ccattgtaca caaatttgtt acaaataact
      181 gagctgggaa cgcattaggc aacattcata atatataacc cacagctttc gtttttatga
      241 tttagtgata tttcaagata tttgtaaatg tgaagattgt ttctgccata tgtagccact
      301 tcattttaat ttgccagtgt cagtaattca ggagaataaa ggaacatttt gtactgcatg
      361 caaacagatc ctcaggtgct tgcgataaaa cttaatagcc accatcttta cttgtagtca
      421 ttgtaagcaa tttcatcaga atgggcaata ttttttaatt taaaagattc aggagattta
      481 gcaactctgt attgccatat atatttagaa tactgatttt gtcagttttg agcttataaa
      541 tcttggtcct ttgatctcca gtcattttga caagacagaa aatagcatct tggagtaaat
      601 tggaacagta tagaaatacg tttgggattt atattaacaa tgattgctgc agggatgagg
      661 ccattatgg
//
LOCUS       KCOD01002347             631 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 261356pyr ultra-conserved element
            locus uce-1746, sequence.
ACCESSION   KCOD01002347
VERSION     KCOD01002347.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 631)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 631)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..631
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="261356pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>631
                     /note="ultra-conserved element locus uce-1746"
BASE COUNT          206 a          116 c          119 g          190 t
ORIGIN      
        1 atccaaaaat gagatgcagc atatttacat ttttatttga tgaagcctgt tcctgcaatc
       61 tttgttctta atttggtctc aaaagaatta gtagtaagag gaaaaatagt ctgtaaatat
      121 gtatgaaatc aaatttagag ggtaggctaa aaggtattga ctgccagcag tgctaaacag
      181 caggaggcaa aatttcctcc atagttttct tcttggctgg aaacacattg ccttccatct
      241 agattattta atcctcaaaa tgcacatcaa agcttctcat cgggtggcgt atatctttac
      301 cagcagttga atgtcaaaga tctagcttaa agaaaaaatg taaaacataa tagatcccag
      361 ataataacac agcagttcct ctactatccc ttccagcaaa ggagtggtat tgcaggttgt
      421 ggctaatcct tgtggcgaaa gaggaaattt cctacgtgag aatttgtgac atccctgata
      481 gaaatgaaat gaacgagtca tgttactgga ctaatattag cttgttaaca attcccttct
      541 ctctttacac ttgtggcttg ccagaacaat aggctgtgag ttatctcact cctccagccc
      601 aattgaaaaa tggatgcaaa atatgtatga a
//
LOCUS       KCOD01002348             558 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 261465pyr ultra-conserved element
            locus uce-2960, sequence.
ACCESSION   KCOD01002348
VERSION     KCOD01002348.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 558)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 558)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="261465pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>558
                     /note="ultra-conserved element locus uce-2960"
BASE COUNT          182 a           86 c           97 g          193 t
ORIGIN      
        1 gcattattta aaactagttc aaaagacata acattttctt aatcttaata atactgcgat
       61 tctcctgcag aactttctgt cataatacca agctccattt tgcattattt catctagtag
      121 ccagttcagg ttctctttac ctggtatggt gtacttcact gaattgtttt gtcagatgct
      181 gtcaagccaa cctaccattg ttaaagaaaa tcaaactaaa tcattttggc atgagccttc
      241 caggagtaag gcacagaata tgaagggttt gatgaaatca aggatttgat ttcaatattg
      301 taaaagactg cctgtcaaaa atgtattaca ttctttcaaa caattttgaa taaatatacg
      361 tgtttaaaat tgtgacagta caatttagct aaagttttgg gagagtattt ttaaattata
      421 ataacttgag gtgaaacaat acttggagtg ctcctatttg aaccctctga atcttaatgg
      481 tacactggac tgaaatcaag tgatcaattt tagggaattt caggacgtat cttgtgtgtg
      541 gaagagttta atttgaaa
//
LOCUS       KCOD01002349             594 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 261565pyr ultra-conserved element
            locus uce-3874, sequence.
ACCESSION   KCOD01002349
VERSION     KCOD01002349.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 594)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 594)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..594
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="261565pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>594
                     /note="ultra-conserved element locus uce-3874"
BASE COUNT          160 a          162 c          120 g          152 t
ORIGIN      
        1 tatttcacag cgctgggcag gaaaaccagc ctgcactttc catgccttct ctttcaatga
       61 agtgcccata ggctccgtgc agcgccagcc cctggctctc cacggcaccg agggttcctt
      121 ttaagaacac ttcgcctgca gtaacaccgg gcagggagct gtgcctccgg tgaaggaatg
      181 ggcaggattg ctttacatct gcactttcat tgaaaacatt tattcaatca aagggaaaaa
      241 taaatgtggt ccctctgctc tgtcaagtat aaactgttat tgatccccta aatgaaattt
      301 gtccatgctg atcgatcaaa cacattatcc tttttcccca gtccattacc agcaattgga
      361 aactctcaag catcaatagc agcttgacca cacacagctg gatgttcagc ctgttcccca
      421 aatcgaatca ttcctgtccc cttcccctcc aaacactggg atctcagtat tatgaccaca
      481 agctgacaga tagaaaatct aaatttcata aaatgctggg aatcagttgc gttgtgttaa
      541 accccagtgc tgtggtaaca gccgtgtaac agcagggact gcaccagtgc ccag
//
LOCUS       KCOD01002350             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 261673pyr ultra-conserved element
            locus uce-7202, sequence.
ACCESSION   KCOD01002350
VERSION     KCOD01002350.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="261673pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-7202"
BASE COUNT          182 a          116 c          131 g          205 t
ORIGIN      
        1 gggtggaatg aatttcctca ctatttatta tatggtccct gatgaaatat atttctctga
       61 taaaggcatg gagcttcctt tcagagccac agagttgtgc tgctgtggcc tccatacttt
      121 catcagtcta aattatttga tacaatttaa ttagtctaat caaaaggctc agcagttctt
      181 gtaactctgc tcaagaaaga ggaaaggcag tgctttgttt acttacagtg ttgttcccga
      241 cgcatgaaga cacaccaaaa taactgctgt ttattttaca agatggaaaa aatattgaac
      301 gccctctggt catagaagcc attttctttt gggattacaa gtgcagagat gaattaggta
      361 cacttaggat caatatctgt ttctcttctc ggctcaagat gggatttgtc aaaattcgag
      421 agcagcttct attgagtgtc agctacaaat ccttccagta ctgagtcata tactcattga
      481 aagttgaaat ataaatggca aagggctttt tcagctacaa tgtccgaggt caaaatggta
      541 gatcacctct ttttaatgag ctttggtttg atgaagtgac cttgcaggtc tggaatctaa
      601 ggacgtaaca ggtctttaca agctctgtct gtgt
//
LOCUS       KCOD01002351             394 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 261779pyr ultra-conserved element
            locus uce-6461, sequence.
ACCESSION   KCOD01002351
VERSION     KCOD01002351.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 394)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 394)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..394
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="261779pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>394
                     /note="ultra-conserved element locus uce-6461"
BASE COUNT           87 a          126 c          101 g           80 t
ORIGIN      
        1 atggcggcgc ggccccggcg ctgcgccctc cgccgccaat gggagccggc gctggctctc
       61 gttaatgatg cagcagtcca gggaagacta tcacatgtga gctggccgcc tgccagcatg
      121 gagacaccga gagagcaagg taaacaactt tccaacgcca aaatgatgac atttaatccc
      181 taaatgctcg cttcccggct cgactcatct ttaacccctt tcagctggtg tggaagcgtc
      241 tggaaggcac ccgtctacct gtccccagtg cttttaaaaa ctggacgacg tgccctgcaa
      301 tgatcactgc gtcaccgttt gccactttgc gaactacgca gtgacaaacc tcggagctct
      361 gaatcgcagg gcgcctgtta acccctgcac cagc
//
LOCUS       KCOD01002352             516 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 261879pyr ultra-conserved element
            locus uce-4305, sequence.
ACCESSION   KCOD01002352
VERSION     KCOD01002352.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 516)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 516)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="261879pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>516
                     /note="ultra-conserved element locus uce-4305"
BASE COUNT          177 a           51 c          107 g          181 t
ORIGIN      
        1 tggaatgcca agaatgttat tttccatttg ctggtggaac tccttggtgt tgtaaagaag
       61 aaaaaatggt ttagagatat aaatataaag gaatgcaatt ttaacatatt gtgtcattaa
      121 gaaatttagg ggcttttaga cagattgtga aggtagcaga aaatgagatg cagtgttgca
      181 ttagatatgt ttttagtatt ttcttctttt tgtaaaagct gtaattttca gagtttagaa
      241 ccaatttaat gtccctggag ctagagcttt tttgtatcca ttgtccatta ggtgaattgc
      301 taagccaaga atggaatcca tttataatgt ataaaatata gtaaaatgct ttaaaaacag
      361 tctaggtagg gaagaaacat caggagtcca ttaaatttga agatggtgag ttctgaggtt
      421 cttcttataa tcagataatg ggtttttgtg cttaagaggc attagatata ggaagattta
      481 tttaaaagtt tgaattcaat aaaaatttat acagaa
//
LOCUS       KCOD01002353             752 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 261989pyr ultra-conserved element
            locus uce-5980, sequence.
ACCESSION   KCOD01002353
VERSION     KCOD01002353.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 752)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 752)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..752
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="261989pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>752
                     /note="ultra-conserved element locus uce-5980"
BASE COUNT          247 a          151 c          142 g          212 t
ORIGIN      
        1 aggatttatt aatgacttat taatgcagaa gagtcaaact gaactctggt acaaatcctc
       61 aggtattcaa aggaaataac tgcttatgag gtagttcctg tcttcagatg tggatatata
      121 ggcaatatta agtatcctgt ttaatactgt acacttatat tcattaccac tcagaataat
      181 aaaaacttct cattttacag ttatttactg ctgaacatca gcccaggtga aagaactccc
      241 agttcactcc tgtatataat ctcaggttct gtcattcaca tgtagaaaat tcagctctct
      301 atttagcaca gtgttggtga aagatagaca tttacagggc ccctctgccc ttgagctgtt
      361 ccattagtgc atggaaagca ccttgcagcc tgtgacaagc gcagcagatc ggcactaaat
      421 caaaaatcag tgccagccag ggatctaagc caccatgaag gtcacagcca tcagctgcat
      481 gccatctcaa tccaaacaaa acacactgga tacaggggga ttttcactac tcacaatagg
      541 agacaaacac atcatgttag agtaatctcc tgatagcagc aaaatgggta actgaccttt
      601 taaatacttt tgagtattta ataaaagttt gaagacaggg aaaagaggta ttagtaattt
      661 ttgggtgctt tttgtagtgt aactgaaaca ttggctctgt gccacagcaa tccaaaatac
      721 taacaaagaa tttctttccc agagatggga ga
//
LOCUS       KCOD01002354             611 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 262100pyr ultra-conserved element
            locus uce-1381, sequence.
ACCESSION   KCOD01002354
VERSION     KCOD01002354.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 611)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 611)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..611
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="262100pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>611
                     /note="ultra-conserved element locus uce-1381"
BASE COUNT          203 a           86 c          111 g          211 t
ORIGIN      
        1 aataccagtc tgaaagtata tattttcagt ggtgcgaaga ctgtattttt gtaatggggt
       61 aacattttct ttccccatgt gaaacactga tggaaatcac gataaataaa tgcaatgtca
      121 ggttaaaaaa tgttgtagtt tcatgttgtt ggtttgcaaa ttgaattttt acataaaatt
      181 tacactaaat ggaacctcat tatacagtga tgaggtccag tatgatccaa atcgttaaaa
      241 tcactgtact gcttaatgat tcactaagtg gtactgcagt gccataaatt tagtactagt
      301 ttcatgattc aaaacaccag actgagacac cagcaaatcg tatgtggatc attaaattta
      361 caatgaatgt cagagatgaa ataaggggga aaaaacactt tgagagatag ggataatatg
      421 tgctctaagg tgacatccat caagataaat gatcttatac cacttctgct tggataataa
      481 tggggggttg tttttttgtt attcttcatt tcataatttc tagaggagaa agtctaagcc
      541 ttttaagaat taaagtatct gtcattttct gagtaccttc tgatctattt tatttgtatt
      601 tatacaatat a
//
LOCUS       KCOD01002355             660 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 262208pyr ultra-conserved element
            locus uce-5873, sequence.
ACCESSION   KCOD01002355
VERSION     KCOD01002355.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 660)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 660)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="262208pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>660
                     /note="ultra-conserved element locus uce-5873"
BASE COUNT          248 a          107 c          113 g          192 t
ORIGIN      
        1 ctcctgctta ttaaggtcac acactcataa atacattaga tcagcttgaa ataaaaataa
       61 tcatgggcaa ggaatatatc cctgcacatc aaaacacgcc acttaaagga tgatggaaca
      121 aagacacaaa gcattaaacg ttagcttcag caaagtagct acaagaaatg ccctcagaga
      181 tagaatatct aagaaaaata gtactggcat ctaattacag cagtagagtt tgctgctttt
      241 atctgtaatt ggactgtata gtctttcatt ctaatttact ttacatccaa actgtgataa
      301 tcaagacaag cagaacagaa tggcttgtaa ctggctatac caccgacacc agttaatgcc
      361 taattataac aactaaatta aagaggggac tgtaaggagg ttgagtatca gtttgaagca
      421 tttaattctg tggaaagaaa tagagatttt aaatccttag tatattatgg ctcattatat
      481 tggtattgct aaacagatta atgaaattaa gtattttgtt ttttaaagaa aagttttatc
      541 atgatgtaaa gatagctttt aatgaaagac cacactagag aaggaaattc acattccaga
      601 ccaatttata aaccaatcta atccagtagg tagaattgac tttcccagga taagagttgc
//
LOCUS       KCOD01002356             806 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 262317pyr ultra-conserved element
            locus uce-3946, sequence.
ACCESSION   KCOD01002356
VERSION     KCOD01002356.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 806)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 806)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..806
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="262317pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>806
                     /note="ultra-conserved element locus uce-3946"
BASE COUNT          236 a          167 c          149 g          254 t
ORIGIN      
        1 tgtacaagga ggggttttca taacaatgaa cagcctaatc agggtgaaga atcctcagct
       61 gaaagctcac aaagagatcc ctctatcctt tctccatttt ttcaattcta cttttctcga
      121 taggggtgtc tcaccagaga acctgaagag tgaaagattt actgaaatcc atcaaaccca
      181 ggcttgtggt ccaaacccaa gcagctgtca aacccagaga caggaatgta tgctcacttc
      241 tgcctaataa aatttgaatc aaacactttg catctgattc tccatgtgag cttttatgca
      301 aacttctaaa gtgcaaggaa tcctggggtg gaagagctat tctgagagct ttcacatagt
      361 tcatgtaatt agggaaacca cttcctttga ttgtaagtgt tcaaaacagc tgaatttctc
      421 ctttcaaagg actctgtgat ttgggtcatc tcttttactt gctcttttat gtttctcaag
      481 atgagaggtg agactgtaaa gcacattatt tagaaaaaaa aagattccac tttttgtttt
      541 agggattgaa cttcgactat tcaaacgctt gtcatttgga attctttccc tccctctgtt
      601 tccttccttt tctgataagc tcttcctcga gcgaatatag tccaaaacgc caatttaaac
      661 ctaagggaaa actgaaacat ggtacataaa ggaaaaggga ctctcatttt cctttgtgag
      721 gttgtggttg aatatgtaat cataaaggaa ctctagctgc aggatctcag tccccatgtc
      781 acatttacct tttcaatggt tctaaa
//
LOCUS       KCOD01002357             476 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 262424pyr ultra-conserved element
            locus uce-4580, sequence.
ACCESSION   KCOD01002357
VERSION     KCOD01002357.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 476)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 476)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..476
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="262424pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>476
                     /note="ultra-conserved element locus uce-4580"
BASE COUNT          150 a           82 c          107 g          137 t
ORIGIN      
        1 catcactgac taatgaggac tgacctttgc agcaatatat acagtcagtt tattaaagca
       61 gggacagagc aatctctagg cctttggtca atctaggttg cttggggctg aggaatttcc
      121 atttaaaata tctcttcagg tgataaagac tgattcaata gagatcggct aataaagaaa
      181 gtgctggaag ctactattaa attctagctt ctgtcagctt aacagcaaaa acttttaatg
      241 aggaaaccat taaagttgac ctaatgaatc agaaatgctt ttccttgctg gctaattata
      301 gagtgcctag aatatctttc aacatatgta atttagaaaa tacagatcta ctgagtcccc
      361 ctgctctcaa agaaaacctg ttgcatctct tctgggagga ggaagggttt gacctggatt
      421 cactgaggaa acggggttag atgggctgga tgcagaggat ggattaaatt agtggc
//
LOCUS       KCOD01002358             729 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 262536pyr ultra-conserved element
            locus uce-7283, sequence.
ACCESSION   KCOD01002358
VERSION     KCOD01002358.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 729)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 729)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..729
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="262536pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>729
                     /note="ultra-conserved element locus uce-7283"
BASE COUNT          234 a          144 c          136 g          215 t
ORIGIN      
        1 ttgaactact aaatactatc agccattaaa attaccagtt gctggtgtaa tcctgaaaaa
       61 taaaggaaga aatgattttg ctttaaatat tggtaaaaaa gctgagagaa taaaattaag
      121 ttgacctttt gatagatgtc tgtttattga tttaaattca ccattttgtg aacaatgtca
      181 aagaggtctg ttagaataga agcatgtata ataacatgag ctaaacaatt tttatttctt
      241 tgtgtgtcat tacagagaga ttgaagcaag cttcacctaa gtgtagtgat gcaaaaaaaa
      301 taataatacc cagtctggat gtgaaaaaaa aacaagagct tcatattaaa gtgccttcta
      361 ggtagctgac atgacgcatc tagtcagacg taaataatga cagacggaaa ctatcatgag
      421 gtctgtgaag catcaacatg ctgccatcat tttctttcta accttgcttt gctagcagct
      481 ctcagactta caggctgaga gatcatttaa aaagcaaatc ctaatgatgc tgcccactgt
      541 agcaacagcc agtgagactg gcatcaattt agctcagttt gggaactcgg gctagcagcc
      601 attgctggct cctgacaccc caaaccctcg ctggctcccc gcagcttcat gtgcatcttg
      661 ctgaaaatga tccacccttc ttcacctgcc tcttggcaaa taagcccttc agttattttc
      721 tttattgga
//
LOCUS       KCOD01002359             355 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 262647pyr ultra-conserved element
            locus uce-5157, sequence.
ACCESSION   KCOD01002359
VERSION     KCOD01002359.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 355)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 355)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..355
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="262647pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>355
                     /note="ultra-conserved element locus uce-5157"
BASE COUNT          114 a           61 c           56 g          124 t
ORIGIN      
        1 tgtgttagct cagctggcta atgagaaatt gccacaatta ccaaatcttt gttttcaatt
       61 ttcagtaagc agagctttag aagaacaaac tgctcttgaa agtttttttc cctgaaagaa
      121 agaaatcctt cctagcaact gcaattatga tactttcatg tcaaatgaat tatattactg
      181 aaaataaatc tttctaagat gcacaagagg gttatctggc tccagtcaga cttatgcatt
      241 actggtttta tatgttgtac tctacttgat taatataggt aatcaaatta tattgccttc
      301 cactgtgctc tcaaattcaa ggctataatg ttttcaatga caaagttcat agagt
//
LOCUS       KCOD01002360             560 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 262757pyr ultra-conserved element
            locus uce-7263, sequence.
ACCESSION   KCOD01002360
VERSION     KCOD01002360.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 560)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 560)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..560
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="262757pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>560
                     /note="ultra-conserved element locus uce-7263"
BASE COUNT          151 a          111 c          133 g          165 t
ORIGIN      
        1 tttctcctga cgtgccttcg ttagcaattt gagtgaccct ttagtgacta atttaattac
       61 cccggcccac aaactgacag acagctgtta aaaatggtta ttgcattatt aatacgctcc
      121 agtaatttcc cattaaaact atactgttaa taacccctgt atttcttccc tcttaattag
      181 tctatttaaa actttgaagg aatattctct ttatggtaaa tgggagcgtc aagcaaatta
      241 catttttgat tgaatacttc tgtgataggc cagcaaataa gaccgttgag ttgttaatta
      301 ttgtcagagt ttcacacgat gcctgctaat gaggcagtca atcttctctg ccattcctag
      361 aatattaatg gaagccgttg gtattgattt tgtcaccagg aaaaggtaga aacttgggga
      421 gggcaggggg gatctgcact gggaggggac actgaaggga tcagagaggg gtgaggcgct
      481 tgaagctggt ggatagctct tggatgtgcc aacggcagcg ggggggttgg cacattccca
      541 cagggatcaa tcccatcccc
//
LOCUS       KCOD01002361             512 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 262864pyr ultra-conserved element
            locus uce-1413, sequence.
ACCESSION   KCOD01002361
VERSION     KCOD01002361.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 512)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 512)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="262864pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>512
                     /note="ultra-conserved element locus uce-1413"
BASE COUNT          202 a           83 c           72 g          155 t
ORIGIN      
        1 ttctttttga agtatgttat ctaaattcaa attttaagaa ggtcattaaa aaaatctgcc
       61 tgtgatttta aaggagaaca aagtggtggc aagaaggtat gatgtgcact aagaacaagt
      121 tattcctccc agatacacac atacgcagac aaaccctgcc atatcatacc atacaaacaa
      181 ttttaattgt gtagttacag tcaataacca ctcctagtca gaacatttct gcataaagaa
      241 aattgtgata cacttataaa aacagccagc tgtaacaaaa taactggtgt tttcatagca
      301 ataaactcat aaaaaagaaa tacaccttta tacagaaaat ttatacagct gtagctttaa
      361 aattgattgt aaaccaaagg aagacacatt gcaaacatca attattttca cattaattgc
      421 ataagtttct aaggtgatct attagtttta tttacctaag cttatttgca tgatagtaaa
      481 aattgcatac aacaataaga gtgaagctta ta
//
LOCUS       KCOD01002362             584 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 262976pyr ultra-conserved element
            locus uce-3244, sequence.
ACCESSION   KCOD01002362
VERSION     KCOD01002362.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 584)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="262976pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>584
                     /note="ultra-conserved element locus uce-3244"
BASE COUNT          163 a          137 c          114 g          170 t
ORIGIN      
        1 tttttcccca tcctttctta aagagaagaa ctttggccca gaagcaaaaa tgtagtaacc
       61 ctcgtgtaag cattagttta ttgtgtacca aagaaaatta catccttgag gtcttggaag
      121 gcacagttat acccattttg catatatatt gtgcattact tggggagctg ggtggggaga
      181 aagactgtgt tgtacatatt tgttctggct attgtttatg caggtctgac tgaatgaagg
      241 aacagtgggt atcatttcaa tttctgatgt caacatcaaa ttacttattt aatttcatgc
      301 ctggcgaagc attgtatagc tacacgcaga atcatttcac ttcatttgtt atgctgtgtt
      361 ttcttggcga ttggcttgcc ttccaactga cagctttaat tacgacatga atttgattgc
      421 actgccgagg aattaacata atgcaacaaa gcatttaagc acccaacctt agacacacaa
      481 acacacacat ccccaccctc gcagccacac gcacacacag ccactgctgc tgatcagctc
      541 ctggcacgac acgcgcagag ctctgctcgt cactccacgc acag
//
LOCUS       KCOD01002363            1104 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 263076pyr ultra-conserved element
            locus uce-1806, sequence.
ACCESSION   KCOD01002363
VERSION     KCOD01002363.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 1104)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1104)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1104
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="263076pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1104
                     /note="ultra-conserved element locus uce-1806"
BASE COUNT          385 a          203 c          175 g          341 t
ORIGIN      
        1 ctcgttttcg tagttagttc attacacctc ctgggtgggg tattccccac cagcagaatt
       61 tttcctcatt cttgagtgca ctaagagtgc atgattgttg ccattatgta cctagatgga
      121 tacaaaaatc cttcttagtt ctacgtgaaa ccagtggggt tttcacagcc tgtcagaata
      181 aaaaaatgaa aagataacat cgtcaatgga cctgaaaaag ttgtttcttc ctcaccctgt
      241 ataatgtctc aagctctttt aacttgttgc taaatgttta tctacacatg ctgtcagaaa
      301 taaccttgtt aggaaggtga agttggtgtc tcagcaaatc agacccatgg agtaggcgtt
      361 gagtggcctg tgactcgctt tccttttttc tctttcagca ccatcagaag gaaaagtgag
      421 aaaaacagca caaacattag ttaaagcctg aatttaatcc catgtcctac aggaataatt
      481 tcattacaat gaaagcagac agacagtatc tgtatttgtt tttaagcagt gataattttt
      541 atccaattaa catagcctat agctctccca aagatcataa catttaatat ttaattaaat
      601 gattacaaat tacctgattt accatcactg aagacagatt cttttaaaaa tggctacaaa
      661 tgccttgttc acaaaagact ttattatcta atgatgcata ctgaaaacat acagaaatct
      721 gcatggtcca ctttacatgc agcagaacaa tcttcacttt acaataagta agtgtcaact
      781 gttttatgca agagacaaca ctttaaagtc acatttctta aagaaaagct tcatttacaa
      841 aagaaataaa aggtaaagaa gcaattaccg cttttaaaaa gcagctgctt tgttcaagag
      901 tggaaggttt atgcctgtat tgaaagacaa catgatcaca aataatgaaa acaatgaaca
      961 aatgaaacac ttttagcata aagcagtaca ctttcaaaat gacatacaaa tagttaaaaa
     1021 tttcattatg ttgtctatct atcctttaga tataaggtct ttcgaatgag atcccaacat
     1081 atgtaattac taaatgaaaa ctct
//
LOCUS       KCOD01002364             652 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 263180pyr ultra-conserved element
            locus uce-2997, sequence.
ACCESSION   KCOD01002364
VERSION     KCOD01002364.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 652)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 652)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..652
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="263180pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>652
                     /note="ultra-conserved element locus uce-2997"
BASE COUNT          206 a          173 c          105 g          168 t
ORIGIN      
        1 ccatttctgc cacacacctc tgatattctc ccatttaaac ttcatggtta ctaacgatct
       61 tcagtcctaa aaagaagact gcagcacttc ttctctgatc atgtctgcaa aattcttcat
      121 aaagctgtgt tcatcagttc agcagcagca gttagctgaa accagccagg ccaggaaagt
      181 gacacgaaca ggatgctgct aaacatgcac aactcagaaa cacacactat attctcttct
      241 gcatgatttg ctgccattta aaagacaata aacagcaact ttagattgct aacaacatgt
      301 catttaaggt ttgctgttgc tcaacatcaa gaaaaatcaa tgccagctct acaggggcag
      361 aaaacccaaa gaagtgagct ccatttcagg tctgtttgaa ctcatttcct ttctccatgg
      421 ttgccccctt gtacaccccc tcaggcatcc cctcacagca ggcatgacag cttgacacat
      481 tgacagcttg cactgaatga caactgattt gtacaaattt caagccttat aaatctacct
      541 gtcacaacaa caacataaaa gagcttggac ccagcaggta actcagaaaa agcttcccct
      601 gacagcattt tctgaaaagc aatggcttgc ctcctgccaa aaattccaac ta
//
LOCUS       KCOD01002365             688 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 263285pyr ultra-conserved element
            locus uce-6674, sequence.
ACCESSION   KCOD01002365
VERSION     KCOD01002365.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 688)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="263285pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>688
                     /note="ultra-conserved element locus uce-6674"
BASE COUNT          225 a          115 c          132 g          216 t
ORIGIN      
        1 ggaggcagaa ttgggagctg tgcctgagac agtaagtttg caagcagctg attttctgaa
       61 ttccccctac aaatgtttta cagtggaaac aggaaagcgg aaacatgctt catatctgac
      121 taaaaataaa ggtactctta aacttgtaaa aggcaacatt tttatttgaa tgatatgaca
      181 gagctgccac aggagtgtta cctgctataa agaaagctta agaattatta cctttattag
      241 accagtgaca ctgagcttta gccatacatt tctaacttct gtccctctac agagacaatt
      301 ttcttttctt aaataaactg tcatgctagt gttaatatat tgttggctcc ctcatactct
      361 gagaatactg ctgatataaa acatgtatat gttagattgg taatagtatc tttagtgtag
      421 ctgactagaa caaatgtgtt tccctcatgg ctgtgctaat gtgataaagg aaaattggct
      481 gttcatcagc ttttggctgg gtaaagacag tagagatgga accacattct tttttatgca
      541 ttaataccac tgagaacttt tcactagtta tatttcatgt gcaggcatgt tgtgcaaaga
      601 tgttgtaaaa catgagataa tgctacaaat aacaaagtag aaaagcctgt atcttttatg
      661 atgataacag tcaaacacca aatgacag
//
LOCUS       KCOD01002366             382 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 263393pyr ultra-conserved element
            locus uce-5356, sequence.
ACCESSION   KCOD01002366
VERSION     KCOD01002366.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 382)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 382)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..382
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="263393pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>382
                     /note="ultra-conserved element locus uce-5356"
BASE COUNT          104 a           89 c           56 g          133 t
ORIGIN      
        1 ttgattttat gcacgtacca cgctgctgac agattgtttt acagcaagac ctcctggtga
       61 gcccctcctg agctttctca tctgctacca aacatgagac agctgacagg tttttaaatg
      121 atgaactcct atgggtcaca ttacttaatt atacagtaca tccagggata cgcacatggg
      181 tcttttatgg taaatgatat gactgtctta aaaactcatt aatatgtcat taaccaagca
      241 gacatttact aattaaacaa ttagcccctc tcttctattc ctttgttcca ctcagagatg
      301 ctcatttact gcgatccccc ctcagacttt tttaatttaa cttagtatct ataaaacatt
      361 tcctttgctt ttgtctcagt tt
//
LOCUS       KCOD01002367             757 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 263504pyr ultra-conserved element
            locus uce-6752, sequence.
ACCESSION   KCOD01002367
VERSION     KCOD01002367.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 757)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 757)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..757
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="263504pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>757
                     /note="ultra-conserved element locus uce-6752"
BASE COUNT          204 a          164 c          161 g          228 t
ORIGIN      
        1 tgcccacttt cacacctttt tgaagtgaca actatgtgct cattttgctt tcagtgcagt
       61 atcatcacaa caaaggtaga tatttagtag agaacaagga gaaggtacta ttctcagtat
      121 ctaacacagg tcataccatt ggatgccaca gttcgagcct gattttggaa tgttttggat
      181 cgagttccgt attgccctga aaaatggctg gcttggggtg ataactcatt ccatgcaccg
      241 ctctgtgacg gatgaaggct cgcctgggac tccgcagggg gattcaggcc caggctaaat
      301 ctaaatcttg gggctcctcc ttcagttttt ctccttcttt gccaactcgt tgatagattc
      361 ttccagtgct gtcattcagt aatcttctca tccctgtaat ttgtttttta atttcccggc
      421 tttcatctcc taatgaaaac agagccacag ttaccactat aaattagcaa aaacagtaat
      481 gggcagcgat tagttttaga tgccaataag agttggagaa ccaagaaaga attgagtggt
      541 tgttgggatg taccaggcta tgctttcaca cagccatggc tgacagctct catgcctgaa
      601 agacctgctg aacttggctt tcttaatgct gtttctttga tgagtaagat gccagaagga
      661 aataatagct acagcagttt cataaactgt ccttttaaca gaccgatcct attcaagcat
      721 tgacatcggt ggatatcttc tgagtaaagc ccaaaag
//
LOCUS       KCOD01002368             753 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 263611pyr ultra-conserved element
            locus uce-4844, sequence.
ACCESSION   KCOD01002368
VERSION     KCOD01002368.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 753)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 753)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="263611pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>753
                     /note="ultra-conserved element locus uce-4844"
BASE COUNT          240 a          121 c          177 g          215 t
ORIGIN      
        1 ttttgacaga aaattcaggt cttttaagac gttgggtatt aaaaaataaa tgaaatggct
       61 ttttaagatc acaggatcag tccaatccat gtaaatttta ttaccagact tgggcagcaa
      121 tttgagtgct gctaaaatat taattggata gaaatgaaag ggctctgcta gctgatagga
      181 tatcataatc atagctgcag tagtcgatgg taaatgatga taaatggcat taggaacctt
      241 ttagcaaact gtaataacta cgaggaggga agcagtatgg atttgcatta tatctgatac
      301 cctctagtac caagtggatt gccaatactg cttgtttagc attttctaag ggcaatagga
      361 tattgatttc tgtcttacaa ggaatagctc tattttcacc attgaaaagt attgcaggtt
      421 gttaagaaga aattgacttg aagaggcctg actgctgccc atcatggagc aaataaagca
      481 aaactgccga agcatggtgg agcagcgaga tggggccctc agcaatttgt tgctattaat
      541 ttaccatgct cgacagcaaa tcaatcggca tctacttcat ctgctggaga aaatgctgtc
      601 cagggcagat aaaaggccct ggtggtacag ggagtagact ggattggcca aaccgaggct
      661 gcagttaatg tgtaaataag tgaaatcaag gccactgttg ccgagaaagc tgtttttaat
      721 taggttgggc tttatagtga gctatttaag aaa
//
LOCUS       KCOD01002369             594 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 263723pyr ultra-conserved element
            locus uce-2145, sequence.
ACCESSION   KCOD01002369
VERSION     KCOD01002369.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 594)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 594)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..594
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="263723pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>594
                     /note="ultra-conserved element locus uce-2145"
BASE COUNT          190 a          111 c          104 g          189 t
ORIGIN      
        1 atgggagttt aacaaacaaa taccagcccc tgctgagcct tttcagtcca gcagcttatg
       61 ggtgattcag ttgcatcaga ggcttttaga ctgatcaatt cttaatcaca aagcgcaaaa
      121 attattctca gactcatgtc agtttctttg gacacctttg ttaacaatct gcttcaaatc
      181 atttttttaa agaactgcag acactgtttt tattgacttg ccacttgtaa aatgtttata
      241 gcttgttaat ttatatttac ccctttactt ttgcctgcaa atcaacatca cttagcacag
      301 tttggttaca ctttgtccaa aggaaattac agaagcctgc tatggggcta aaatgaagga
      361 aagctgagga aaatcaatac actgatgatt aaacagatcg tagcaaattc acggttgtaa
      421 gctacagcat ggagacatca gtgtgatgcc tatctagcag ttaatgtcct ttcagccagt
      481 tgaagaaaat tttacaataa ggcaaaatgt aacagaaaaa atataagcta ctacagagca
      541 attttgctcg gtaggaacag tcctgttatt caaattttaa tttgctattt gtct
//
LOCUS       KCOD01002370             493 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 263833pyr ultra-conserved element
            locus uce-5114, sequence.
ACCESSION   KCOD01002370
VERSION     KCOD01002370.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 493)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 493)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..493
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="263833pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>493
                     /note="ultra-conserved element locus uce-5114"
BASE COUNT          156 a           96 c           92 g          149 t
ORIGIN      
        1 agcctgattg tcaaaaaaaa gcacacagga agagtcaact agctacaagg aacgaagtaa
       61 gtgatctttt cccattataa tcaggacaca gagcctgtga tatctctggg agctcaatct
      121 aaataaggcc ccatcctctc gtctatttca cattatgaat aaaaacatga aattagtttt
      181 atgtcagaag aacaaccctt aagacacttg taacttataa ttataatttc taagctgttt
      241 ggcttgtcac tatcaaggaa ttcacagccc aagacttcca ggactttata ggctgagaca
      301 tgctgtgcta gctactgaaa attaactatg aatctctgat ctgcatcctg atttattaac
      361 tacagtgaga aatagaaagt ttctgtatgt gcatagcctg ctagagttga ggccactggc
      421 tgtgttctgc ttctattcaa taaactacta gcgatgggta aatgtagggt ttcttcctgc
      481 aaaagttttc ttg
//
LOCUS       KCOD01002371             689 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 263946pyr ultra-conserved element
            locus uce-1148, sequence.
ACCESSION   KCOD01002371
VERSION     KCOD01002371.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 689)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 689)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..689
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="263946pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>689
                     /note="ultra-conserved element locus uce-1148"
BASE COUNT          251 a          140 c          114 g          184 t
ORIGIN      
        1 taacagttgc acggtatgga tgaatggtgc tacagcactt aaaattacac atgcacaaac
       61 atgatggaaa ttagtattac tgtagatatc aaaagcaagc agacctaatt aaagaaataa
      121 ctgcaacaaa cccagatgca acccaaaaca aaaaaggaca actccaaatc taatgaatcc
      181 tttgaatatt aattacagaa ttcctaacaa tacactggga aagctctctt ggagaattca
      241 gtttactgtt taacagtttc tgactaattt tattaacctg tacatctgag aggatcaacc
      301 ccctctgggt ttaattagaa gaaaattcaa tttaaatcta aatgtcaaca gtggttacta
      361 attatggcag ggccctggac gagacatcca gtctgtaatc aggcggttct ctgctaacaa
      421 ttaacagttt ctttctgagt tatgagtgca ttaggatttt cctttttcta aataaatatg
      481 attcagtatg ggacacgact aatattaaca gcacctactg ctacgtgcag acatgcagaa
      541 gaggttgcca aattaaatta cagagatttc tcaaacatat agctgaataa taagcagcta
      601 caaaactagg tcagggtcgc aagcagtcaa ccacagcccc tccccccaac atgcaaaata
      661 aatataccca ctatctctga atagaaatc
//
LOCUS       KCOD01002372             637 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 264154pyr ultra-conserved element
            locus uce-6587, sequence.
ACCESSION   KCOD01002372
VERSION     KCOD01002372.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 637)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 637)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..637
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="264154pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>637
                     /note="ultra-conserved element locus uce-6587"
BASE COUNT          196 a          114 c          128 g          199 t
ORIGIN      
        1 gaagggtggt tattccagaa ggcttgaggg gggaaatccc aacattagtg caatattgcc
       61 aacactgaga ggtgtgaaat ggcaatggga ttttttcctg catcagccat ttttatacca
      121 agtttttata tcaagtgctt aaaaaaatgt gttagcacat caactcttct gaaaagtgaa
      181 gactaattta ttatcatgtc attattagca caatcacaga aagggtcact ggtctttcct
      241 ttaatttctg tcacaggctg caggccgcat tatgctgaat caaggatatg ggaagataat
      301 taacacagca tctatggcaa gtttaatagg tgagtgatga gagctaacag ttgtgcttca
      361 gaatccatat tttaattact accgatgcta tttgaatcaa ttaaacctgt attgggaagg
      421 agtaaatcac tgacatttcg tattagagga aatgtactac aaaattttta ttgatatcat
      481 ttttcaacat ttatctgtcc tcaatgtttt agagcactta ttacttttta ttgaaaaggc
      541 agagtcaccc tctctgactc ctgtgcacag ataccacagg agatccctcc atgctgttcc
      601 aggcaaacaa gtgggaagct gaggtgccaa tatttgc
//
LOCUS       KCOD01002373             756 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 264263pyr ultra-conserved element
            locus uce-1291, sequence.
ACCESSION   KCOD01002373
VERSION     KCOD01002373.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 756)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 756)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..756
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="264263pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>756
                     /note="ultra-conserved element locus uce-1291"
BASE COUNT          207 a          149 c          150 g          250 t
ORIGIN      
        1 atttgcatat tcatcatctg ccttgggttt tcttgttttt attcttattc ctttaaaacg
       61 acatttacct ggagaagggc ttagttctat tttctccgca gtcgacttta atcctaacga
      121 aagaattaac actcagaaaa ccttctttgg gtcctacagg gcattagaac atctcaggtg
      181 ctggctgctg gtttaataaa aggataggat ttccatttac ttcaggcagg cttaatgtat
      241 tgttcttgta gtgagacagt cagaatgagt caggagccaa agaatacact ttatagacac
      301 aaataatcgt aaattcagaa tgtcaccttt aggcagaggc atttttatta ttgttagtgg
      361 agctgctgag taggtttgat gttttattct cttgagtact aaatgttcca gagtaccaca
      421 gccctatctt tatcaggctc acaaggaggg agcacagcca aacttgcttc ctatacttct
      481 ctatgattga tagcagatgg catgctttaa aataaaccta tccattagca gtcctcagtg
      541 tttttactca aggcatttac aactgtctca accagaaaac acattcgctc cacaagctcg
      601 tttcagtctg caacagctgt acaggtgcaa atctttcatt aactcttaaa ccgtggtgaa
      661 ataaacgctg cactgtattt tatttttagt ggaggaggtt gatcttcaga ggcagagtgg
      721 attttgttct ccctttgcat gtggcagagg ttcatg
//
LOCUS       KCOD01002374             645 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 264373pyr ultra-conserved element
            locus uce-4588, sequence.
ACCESSION   KCOD01002374
VERSION     KCOD01002374.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 645)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 645)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..645
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="264373pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>645
                     /note="ultra-conserved element locus uce-4588"
BASE COUNT          208 a          118 c          122 g          197 t
ORIGIN      
        1 aaacaaattt gtatttcctt cagcacaaac aaattttaca ccaatattta tagattgcac
       61 cactgtgatt cgttaacaaa ttaagtccat tttctgtcac aaatgactta aagaatatta
      121 aaataaattc ttccttgtaa gggcatattc ttattgacat ctttatgctc tgagagatta
      181 tttggcaaat aatattgctc ctgcagatct cacttctctg aggaaacact agatctggta
      241 acagaaatat ctttaaatct tttagatagc cagtccacag ggaaaggttt aagaaaggat
      301 caaagcttgt cctttcagct tgaattattc cattacagct gaatgtgaca taattacaaa
      361 agatgttgga tgtggaatct catcaggatt atctgacact catctttgtt gaaaaagtct
      421 ccccagctgt tgctctgata gcacaaatgt gacaggagtg cagaacacaa aagtagttgc
      481 aagtgactga tgctttgggg ctggtttagg ctctgtgcag cacactgtga cttttcagcc
      541 acctcaaaca gtgaggcgga ctgacttgca ggtgagaggg aatatcaagt atgctattga
      601 attcctaaat aagaaaattt gtttgaagca gcccatagac cgata
//
LOCUS       KCOD01002375             620 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 264483pyr ultra-conserved element
            locus uce-1550, sequence.
ACCESSION   KCOD01002375
VERSION     KCOD01002375.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 620)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 620)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..620
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="264483pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>620
                     /note="ultra-conserved element locus uce-1550"
BASE COUNT          219 a          114 c           98 g          189 t
ORIGIN      
        1 catttaaaat ccaagtttcc cctctttcat tatcctaggt tgccctaagt accaattaaa
       61 tttccttcaa tggcatgagc taccaatcag aaccactata tatctataga aattgaaatt
      121 gtaatgagtc ttaccagtgt attgctaaca ctttggttca tttgatatga actttgtttt
      181 tttaaagtac cacatggtaa ggctttgaaa cttcagtttg taaaaaaaac tgtaacagcc
      241 ttacagcctt tgaagtcact actgatataa ctctgaacag atccattcaa gttcaactaa
      301 catcagacaa atgtttagtg tatcagagga agccacaaaa gcaaggattt catcaatatt
      361 tcacaacagc ctcagggaaa ctgtagattg caatgctgta gggcagctaa tggaattaca
      421 cacaagggtt ttgtacattt aaaataagca gctactaaaa aaattaccct tcagtttgat
      481 agaaactgta taaaactgca gatgggaaac aattaaatag ctaccaacat ttatccatgt
      541 cagcctgata ggtcatttaa taacaggtat ttctttcccc tggtagggca ataataaaga
      601 ttaacattta tgaaaagtag
//
LOCUS       KCOD01002376             482 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 264591pyr ultra-conserved element
            locus uce-1350, sequence.
ACCESSION   KCOD01002376
VERSION     KCOD01002376.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 482)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 482)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..482
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="264591pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>482
                     /note="ultra-conserved element locus uce-1350"
BASE COUNT          175 a           79 c           64 g          164 t
ORIGIN      
        1 ctaatgctga agaacaacat ggcatgatgt tgtttttcaa aacaccccca gatttgtctt
       61 tctttttaat gttcttcact ttgcttctta gaaaaggggt taaaattagt aggcacattt
      121 catattagcg tatttcatgc aataaagcat aaattattta aaataacacg accttttatc
      181 ttgcaccttt tgaaggaagc aaattaaaaa tgtaaattgg gagctaatta atatgcaaat
      241 gtattcattc gcagttaaca attagcaatt aaacctgcag tgtctacaaa gagcacggac
      301 aaaattagta acttaattta tcattaaaaa atgaaaacgt acacaaaatt ttaattgact
      361 ttcaaaatat ttcccctgct ttttcccttt atttttaata caaaaaatca tattgagcct
      421 tagatatata gatgaaactt gctacctaca gctttctggt aaagttcatt acaaaagact
      481 ga
//
LOCUS       KCOD01002377             817 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 264699pyr ultra-conserved element
            locus uce-6580, sequence.
ACCESSION   KCOD01002377
VERSION     KCOD01002377.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 817)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 817)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..817
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="264699pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>817
                     /note="ultra-conserved element locus uce-6580"
BASE COUNT          222 a          186 c          152 g          257 t
ORIGIN      
        1 tttattacaa aacacacaca catagacaca cgcactgcct tgtttctgcc agtagccagt
       61 ttagtgagaa ttcactgcag ttctgtttac aacagccatg gagagaaatc tgcacttatt
      121 tgccactgtc ctctgcttca aaatgcagaa gtcccgggtt gtgttgtgcc gctctcatct
      181 tatataatga cattaagcag cagcctgcag agaaaaccag actcaatgaa aaatgtaata
      241 gcattgtttt ttgttcgtaa tacttatgct attaattaaa tactgactgc tttgtgccaa
      301 ttgacatcat cttctgcatc tagtgcacat gaaaactgcg tctcctaact tgccttctct
      361 ttttttttcc actttctagt aacggcacag ctaacaagat gaatggagct ttggatcatt
      421 cagaccaacc agacccagat gccattaaga tgtttgttgg acagattccc cgttcgtggt
      481 cagaaaaaga gttaaaagaa ctttttgagc cttatggagc tgtctaccag attaatgttc
      541 tccgagacag aagtcagaac cctccccaaa gtaaaggtac agtttgcttt cagcccaatg
      601 atcttgcttg ccttcagcat ttccaaagac agcatctggg ctctctgttt tgtagtatgc
      661 tgtgtttagc tacgcagcag tcctaagagg aaaggcctgt cggatattgc cttcctcctc
      721 ttcttaaatt gaagtttaat tgtctgtttt ctggaagcgt gcattccaac tgtgcaaata
      781 acaaaatatc gctctccttg tttaaattat cgttgcc
//
LOCUS       KCOD01002378             332 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 264801pyr ultra-conserved element
            locus uce-66, sequence.
ACCESSION   KCOD01002378
VERSION     KCOD01002378.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 332)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 332)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..332
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="264801pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>332
                     /note="ultra-conserved element locus uce-66"
BASE COUNT          106 a           60 c           48 g          118 t
ORIGIN      
        1 ttaacccgtg cctgtgccta ggtatcttta tcagcgtcaa acaaattttt aggactggtg
       61 attagttgcc caaagagcat aatatatgca ttattaatta tagaaggtaa gtttggctaa
      121 ttgtcatttc tatacagtag cactgcacga cgatacattt taacaatcta taaataattg
      181 ataatttttt ttctttcatc ttcctcccta gtttgcataa aactaatgac ttggtaaatg
      241 ttactcactt caaaatattc cactgctcct atgaaaatta aaccaacact gtaaccttag
      301 caaataagga gatttttcat cttattgtag gg
//
LOCUS       KCOD01002379             423 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 264909pyr ultra-conserved element
            locus uce-3422, sequence.
ACCESSION   KCOD01002379
VERSION     KCOD01002379.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 423)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 423)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..423
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="264909pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>423
                     /note="ultra-conserved element locus uce-3422"
BASE COUNT          120 a          104 c           61 g          138 t
ORIGIN      
        1 aatctgtcct tttagctaat aacatcaaaa tgagaccttt ttcttcactt tgcctggacc
       61 tctaaccttt aaaggtgagt tagacagctg cacaaaacct gatctcattt tctgcccctg
      121 gcaagatttt ttcaagttca tcttcttttt ttcccccttc tctcaaaatc tgatgaaaaa
      181 tgaaatgtca tgaaaacagg ctctgaggct aaaaaccctc tgtccgtctc tgtgacagat
      241 gtcagtttga aaggtttcag gtcgcctgtc agaactatgt cagtatgatc cgtacaaaca
      301 tctactcaac ctctaacact gagttctgct ttttaaaata ccccttgaaa aagaatcaaa
      361 tttcaagtca ctgccttttc ccctttcttt taactctgat taatgagcca aactctcagg
      421 caa
//
LOCUS       KCOD01002380             697 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 265017pyr ultra-conserved element
            locus uce-5609, sequence.
ACCESSION   KCOD01002380
VERSION     KCOD01002380.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 697)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 697)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..697
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="265017pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>697
                     /note="ultra-conserved element locus uce-5609"
BASE COUNT          230 a          106 c          113 g          248 t
ORIGIN      
        1 atttttatgt tatagcaaat gaatatttgt ggagacaaag tatttgatct gataatttca
       61 cttgaaagaa tcaaggttat gttatgtcaa ttttctcttt gccctatata agatgcattt
      121 aattatttca tgctatctcc ttctattcca attaatctgt catatatatt gttgctcaaa
      181 ttagaataat tctttaatca gctgcgttat gcatgccata gtaggctaga ataggaaagc
      241 tactcctagc atactgacga tgcatgtttg taatttaaaa gtaaaatcag aaatattgat
      301 ttctacttga ctggagagat gatttagttt gaatatcaga ctgatgttaa tcaggtgaga
      361 attaattgag ttggaggtat tagatattca gtgatgttaa ctgaaccatg atcaatctac
      421 agagaagctt tcttttgtac tgtgctggaa atatcaaata gctcatactc cacaatgtaa
      481 aacaatctct tcatggtcat gctactactt cctctggctc attaaatgca ccagtaatct
      541 gttctgtgca tactgagtaa tcttcaaagt aacaagctaa taaatcataa tttaatacaa
      601 aaaaaagcat aataactact gttgctggta atgttttgga tcaaaacaaa ggttttaaaa
      661 ttttgcccgt ttacatttta aagggaacgg tttctcc
//
LOCUS       KCOD01002381             435 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 265123pyr ultra-conserved element
            locus uce-1694, sequence.
ACCESSION   KCOD01002381
VERSION     KCOD01002381.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 435)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 435)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..435
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="265123pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>435
                     /note="ultra-conserved element locus uce-1694"
BASE COUNT          137 a           86 c           73 g          139 t
ORIGIN      
        1 acacatctta attcatgaga tcctggtgtg tataattgga tagaagtatg aacttgatta
       61 cactagtgaa cttgctttcc agagggggac aggcttcatt gtcatcaaag ggtaaagaaa
      121 tgtgacaatc tgggaaccag ttttaggacc ccatctgcta aaccagagag aaatcaagat
      181 tttacagttc tataaatatt ttagtgtatg ccatcattta tgaactctgg cagctatcat
      241 aaaatctctc tgacttttgt tacaactgca tataaggcca gaaaattgca tctcatggta
      301 aaccataaaa acctaagtaa aagcaccatt cctttcagta tattctaaaa atatacaacc
      361 tccctgtcag tacatggcag ggttgttacc atcccaagat gcctgtttct ctctcatttt
      421 tttttatctg atctt
//
LOCUS       KCOD01002382             647 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 265231pyr ultra-conserved element
            locus uce-646, sequence.
ACCESSION   KCOD01002382
VERSION     KCOD01002382.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 647)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 647)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..647
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="265231pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>647
                     /note="ultra-conserved element locus uce-646"
BASE COUNT          237 a           92 c          121 g          197 t
ORIGIN      
        1 aatcctgtca gtgatttctc aggatgaggg atatttttca aaggctgata tgaaatctat
       61 atctttgctt taaaaactca ccttttgaaa gagtgagcag agatttaatt ttaagaaaac
      121 ctgacaagga aaaaaattgt ttcatttaat ctgaactata attgatattt cagaatacat
      181 gtgctcatta ctaagcataa taaaatttgg cattttctat tgtcagagga tttataaagg
      241 ctaaatttct tgatttattt aaatagacag ataggaaaga gcaaactaca aaaacaagtg
      301 ctatatactg aaggcatgtg aattacctcc ttcccaagga taatgcaaat tagaagtatg
      361 taaagctttg tctgcacctg ggatctttaa tgaggataaa gaaaaatcag acggagattc
      421 tcctgggaaa agagaggatc gttatttgaa taacctgcag tgaattctaa tcaatgcaac
      481 gtgactttga aaatgaatat ggtttttcaa cccgctgtac atgagccata atattaatca
      541 taacttcatg gtacagtaaa gcccatgaca aatggttatt cagtggacta acaaaaagac
      601 cattcatagt gggaggaagg taagggacat acagagtaat ttatttt
//
LOCUS       KCOD01002383             686 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 265338pyr ultra-conserved element
            locus uce-5319, sequence.
ACCESSION   KCOD01002383
VERSION     KCOD01002383.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 686)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="265338pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>686
                     /note="ultra-conserved element locus uce-5319"
BASE COUNT          179 a          143 c          156 g          208 t
ORIGIN      
        1 catttatgga tttcatctaa atccccaatg ggaagtggtg ttattttatt tttctaactt
       61 tgaaagtgaa atctgttctt ctgccggaag gccttcaagc tgcagtcttg attcttagct
      121 gcatgttctt tcattcaata cttctagtag tcctgtgcac aaaattggct cctgtatttg
      181 cacttgattc ctgcaggggc acttggagta gtcgtctccc tctttctcta gtctggttcc
      241 ctccttcctc tccagacaaa taaatgcctt gaggcaagca gacgtcactg gtgtagtctc
      301 gtttgcatgg ggagttgtca ggcctgatct gacctgcctt tccatcagga ttataaaggt
      361 gacggatagt caatttcagg gattcatgat ccattttagc acagcgcttc accttgcagc
      421 caagtaatac ggctgtgata aaatcagcca taatcactgc atcttactca gcactgcttt
      481 ggctgtaaat attgccttca tctattaaaa gaaagaagga aaaaagagac ctaaagagaa
      541 aaggtctgtt gaccatgact gaccagagtg gtattttctt atataacata gcggggaaca
      601 gggtatggag ctggtgggtt ctaaggagct aatgtaggat gcacaaacct gaagcattga
      661 ggttcactag caaagctggg catggg
//
LOCUS       KCOD01002384             685 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 265445pyr ultra-conserved element
            locus uce-5806, sequence.
ACCESSION   KCOD01002384
VERSION     KCOD01002384.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 685)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 685)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..685
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="265445pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>685
                     /note="ultra-conserved element locus uce-5806"
BASE COUNT          199 a          147 c          142 g          197 t
ORIGIN      
        1 cctgccttac accacttgcc acaagaagac cttgtcctca tttttacaag caagtaccag
       61 acctgacctg ttagtccact tatgtaaata ataagtccaa ttccctttgc aagctcctgc
      121 taaagctgtg ccattagagc catcgtgtca tttaggcagt cagtggagaa tcaaagactg
      181 cctgtgctgc agcagcccag tgctacgttt ctaagaaaat gggctcttaa aaaggaaatg
      241 tcacaccgca gtgtgagaga taaacagagg tatatcttta gagcagcagg cagggactgt
      301 agaaacactc tctgtaaatg actttgatcc cctagtgtga tgaatcatgg agtcgcaaat
      361 cctttttagc taattgctat cagcttgtga gatttttcct tccatgttca atatcaattt
      421 tcagggccat aggagatagc acttgtcccc cgagtctgct ggcgacttac cgctaaaact
      481 gaactagcac cacttaacag tttaaagggg gaagtcattt aatatgacac tgctgctagt
      541 aactaaaagg gggggcaaat aaagggaaca gtaaattttt tttactgtca atgacctgcc
      601 tttgaaaatg tcctttccat atccacatag tatccgtgca ttttttaatt attctaagca
      661 gggacttgga gagtgaaatt tggtt
//
LOCUS       KCOD01002385             467 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 265554pyr ultra-conserved element
            locus uce-3247, sequence.
ACCESSION   KCOD01002385
VERSION     KCOD01002385.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 467)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 467)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..467
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="265554pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>467
                     /note="ultra-conserved element locus uce-3247"
BASE COUNT          138 a           73 c          110 g          146 t
ORIGIN      
        1 cactcacaca tatctgcaag cagaaaagat gcgacatgtc agaggagctc ttgctgtttg
       61 ccagaggtct taagtggatc ttctatttca ttcggtagta atgccctttt tgttgacaaa
      121 agtaaattga tgacaggcaa gagggaagca cttggtggaa aaattctgtt gacccttctc
      181 agattgaatt tgaccacaga acaggatacc agcagttgca gaaatgatag atttttgtaa
      241 tgaccggcag aatggccttt tggcatgttt aaatggcaat aaatttcact aggaagaggg
      301 caatttaact actttagggc agtgaggata ctctttgttt gaggtgtaaa taaattgcgg
      361 ttcattaaca gtgcacatat tacgttcacg gtgtaactct aaagcaggga tgttaatatt
      421 taatttaatt taagcaggta tactttgctg tttgaggctt gggtttg
//
LOCUS       KCOD01002386             499 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 265663pyr ultra-conserved element
            locus uce-3625, sequence.
ACCESSION   KCOD01002386
VERSION     KCOD01002386.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 499)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 499)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..499
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="265663pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>499
                     /note="ultra-conserved element locus uce-3625"
BASE COUNT          132 a          120 c          112 g          135 t
ORIGIN      
        1 gtaactgtac agattgtaaa gaacacaaag gaggttttgt gtgtgcatgt gagtgagtga
       61 gtccccatca ctcccttttg ttttaacttc cttgcatcgg attttatccc atattccact
      121 gcagctcaca attagcagcc aggcctctgg gacctaatta accaattcaa ttaacaaaaa
      181 aagcatacaa gtcaccctga catttgtcag ccattaggag ggatgtcagg ctggcaggtt
      241 ctaccgacac attaatgatg attagctcat ttgcagctca cttttacccc aggtgtccac
      301 ctggagagac tggcacgaaa cactcctcag acagggagag cggctggggc tgggaagagc
      361 tttactgcaa ctgtggtgac cctcaaaggg agttttgacc ttttattgaa cgtataatca
      421 ataagatttt tgcctcagtt aagagaagct gctgtcccct catctggctc ctgcgctcac
      481 taaccttcag aggagcgct
//
LOCUS       KCOD01002387             773 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 265773pyr ultra-conserved element
            locus uce-5053, sequence.
ACCESSION   KCOD01002387
VERSION     KCOD01002387.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 773)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 773)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..773
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="265773pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>773
                     /note="ultra-conserved element locus uce-5053"
BASE COUNT          231 a          154 c          138 g          250 t
ORIGIN      
        1 gagaaattag agcttttcca gtctagagag tttcacttta cagaagtact tcacaaaaac
       61 tcctttgtaa ccacgatgga aaaacctaat tttcaatcac atcacagctc actgactgta
      121 aaagtttttg ttttggtttc gtattttctt aaagtctttc tagcgttggc tattaaggag
      181 ttctcacttt ttatcgcttt ataaggcagc tcagtttatc ttttgcttat tttctggagc
      241 ctgcaggaag cctctgccat cctaaagaaa gtcacacata atagagcagc tttagcccag
      301 taagccagtc tttcccaatt catcagtcaa agtgctatgc aagtggcccc ctaaattgat
      361 aaattcccac agtgcctgtt gacccagctg ccaagtgctc atgcagcagg tgttgttttc
      421 atgaccaccc tgacagtaat acaaactgtt tagcagttgc attgacctct tagctattaa
      481 cattgataca ggcttcacta gggactagtt ttcaaacatg acagaatttc ttaagtctag
      541 aggtcatgaa caagtatacc atataagaat aaatttgata tgctgctgag tttaaatctt
      601 aaaagccgtg agttttttcc acattattcc catgtagtaa atctggagac aagtaacgag
      661 cttttggcat ctctcccagg tttttaattt tagaagctgt acctgaagag atgctatatt
      721 tattctatga caagtagtaa atttaggcta tgacaaggag tgaaacaaaa tta
//
LOCUS       KCOD01002388             677 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 265881pyr ultra-conserved element
            locus uce-6288, sequence.
ACCESSION   KCOD01002388
VERSION     KCOD01002388.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 677)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 677)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..677
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="265881pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>677
                     /note="ultra-conserved element locus uce-6288"
BASE COUNT          224 a          123 c          140 g          190 t
ORIGIN      
        1 atgagaattt gagtatactt tcagaggcat gggctgattt aaaatctgat gttgacgaag
       61 agaataagat tcctgtgtgt aaaagccaca ggtgattctt aataggcagc aaattagcag
      121 aaggaatagc agcactttca gtttttaact tgtaatgcaa agaataggaa ggtaattgtg
      181 aattaggagc caaattatgc caggcacaat tgaataagtt ctgacttttc ctactgacag
      241 acatgtatat taatagttgg cacttattga accaaatatg aatattcatc ttcatttata
      301 tttcaaggcc tttcattcct caaggaccac agtgcttttg accaattttc atccacatta
      361 ctaaaatgac agctttcact cctgggccct gacagaggtc tgcagaattc attggaggtc
      421 ctgggaggag ggaaccagct cctgctccca gctgtccaca aacactcatt aagagaggca
      481 aatatccagc agaatctctg tgagaatttt taatcacgca aaggctctgc taattaggta
      541 gctgatgggg catagagagc acaaggacga attctttaaa caaaggacta gaaactttaa
      601 gagctttaat tacttgggca cagagttcat ttcagaactt gggagcaaat tattctaata
      661 acaataagac caagtag
//
LOCUS       KCOD01002389             830 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 265991pyr ultra-conserved element
            locus uce-1362, sequence.
ACCESSION   KCOD01002389
VERSION     KCOD01002389.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 830)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 830)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..830
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="265991pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>830
                     /note="ultra-conserved element locus uce-1362"
BASE COUNT          237 a          158 c          186 g          249 t
ORIGIN      
        1 cccagactga atcatttgac aggagatgac atgcagtatt ttgtgtacat agcccagcaa
       61 aacactgctg ggaatgagat ataatacatg gagaaatgca ctcccaggga ctaccaagct
      121 acctttagta ccgcctcact cgtcgtggtg gaaatcaaac ccctgccaac tgggggaggc
      181 tttctttgat gctgttctgc cctgcactaa ttataaaaga gtacagacac agccccaagt
      241 gtgtggaggt gggggtgggg gagaagcgtg tgtctatgtg aagagcacaa ctatttttta
      301 tgctttcaaa ttcttaatcc tgtttggagc tgtcagtggg ggttaatgga agccttggat
      361 aggagaattc caatctggtt ggcagatgga taggttggtt atagctgcat aactatgtct
      421 tgcctgcagg cacaattcag aacactgtta aagcaatata aagtctctgt caagctgaac
      481 catttggatc agtagcaagg agaaataata ataaaaaagg agttcatttc tgggccttgc
      541 gcgtttatgc tagtatgcag aaactgatta attgtcatcg tgtgctggtc tgctatacct
      601 cagatttcta cttctggagt agattttgca tgctaatata atcattctcc ctcttgagac
      661 attagcaaat aatcaaatga aaaacaggat cataatttac tgagattcgg gcaattctct
      721 atgcaaattt gacttgttat tgctgctgcc tcgttaatct gaatgccttt gacaaactcc
      781 tttgatttat gaactcatga caactccaat gtgtatatat tttgctagat
//
LOCUS       KCOD01002390             686 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 266101pyr ultra-conserved element
            locus uce-2468, sequence.
ACCESSION   KCOD01002390
VERSION     KCOD01002390.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 686)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="266101pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>686
                     /note="ultra-conserved element locus uce-2468"
BASE COUNT          183 a          126 c          130 g          247 t
ORIGIN      
        1 tctaacatga gtgaaaggca ttgtttcagc tgctcacttg aaagaaagac aggaacatat
       61 atttctgagc cttgtcattt aaggatggga taataatttc ctattggaat gtacactcca
      121 gcctcataag aactgcatca ctttccatta tgatcatcct catttcagca gcacttgtgc
      181 attcaacaca tgtgattatg atgttataag ggtagaatga ttgcatctat tcacctttca
      241 tttgtgtgtt gacgtggcat ttgtattaag taggagtaat ttttttttct gatttttttt
      301 cttgtgtcac cagtgcacct attccattct tccatcgctg tgctcctgtg aacatttcct
      361 gctatgccaa gtttgcagag gccctgatca cctttgtcag tgacagtagt gtcttacaca
      421 ggctgattag tggagttatg accagcaaag agattataat gggactttgc ttgttatcac
      481 taggtaattg tttttctcat tactagctgt taggagattg ttaacacact gtaaccacag
      541 tatgagcaaa aaacatgtag caacaatccc ttcaaattct tcaaattgta tttgagagct
      601 gggtattcag aagtattata tatatgtggt tttatttctc ttccactgat tacaagattg
      661 tgtggctgtt cgccaacatt agtttt
//
LOCUS       KCOD01002391             701 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 266208pyr ultra-conserved element
            locus uce-641, sequence.
ACCESSION   KCOD01002391
VERSION     KCOD01002391.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 701)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 701)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..701
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="266208pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>701
                     /note="ultra-conserved element locus uce-641"
BASE COUNT          207 a          151 c          165 g          178 t
ORIGIN      
        1 atgaaacaaa gcaaagagaa atgcagttcc attaaaaagc tgcagaggct taattagtat
       61 attgggtcat tatgacaccc agctcgtttc attaccctcc taatgcatta tgagctggca
      121 gttaaatact gtctgctggg cccggcgagt tctgctcttg tcttggcggc cgtggcgcca
      181 gctccggccg acagcttacc tggagtgagg aagaaatgga gccccaatta gaaagctttc
      241 agcccagcac ccatggaaaa gccaaaagct gataaaggtc agcgtgaaat ttgaatgaca
      301 gggctaaagt cttttactca taattttgtg tttgcaatag aattcagagc aattcacagc
      361 cttaaaggcc ttaagtgaga acagcaatta attgtaatga ataatctgac aaatctggtt
      421 gacatatggc tgctaatgcc ctcctttcta gtgggagcag tggagggatt agattaactc
      481 aaatgaaatc tgggaccgcc atgccatctg catgttcagt gaggagcagt acacgttaaa
      541 tggtgagtgg gtagatctgt cttgttctca tccctccctg agccctcggc agggatggga
      601 gtagcgggtt tattattgcg ccagctgcct gtcaatccaa taataccggc aagtcacaca
      661 ctacaacctc aaaagctaat atagcaaaaa gctgttaaaa a
//
LOCUS       KCOD01002392             250 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 266315pyr ultra-conserved element
            locus uce-2910, sequence.
ACCESSION   KCOD01002392
VERSION     KCOD01002392.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 250)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 250)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..250
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="266315pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>250
                     /note="ultra-conserved element locus uce-2910"
BASE COUNT           72 a           49 c           44 g           85 t
ORIGIN      
        1 atcttatcat gaaagagaga cttttctttt ttcttttttt aattagtact tggtaatatt
       61 accaagctgt gagtttatgg ttttgtagat cttatatttt tgacactaat tactcacaaa
      121 ggcttttaag gcagcatttc aacatagcaa ccggcatgac tgtaattaag taagaagcag
      181 cacatttcag aggaagtcgc attcctgccc tgtatcacag ctcagcccct ggtattgctc
      241 caacgaacga
//
LOCUS       KCOD01002393             444 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 266418pyr ultra-conserved element
            locus uce-7930, sequence.
ACCESSION   KCOD01002393
VERSION     KCOD01002393.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 444)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 444)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="266418pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>444
                     /note="ultra-conserved element locus uce-7930"
BASE COUNT          141 a           66 c          104 g          133 t
ORIGIN      
        1 catcaatcac aacaatgggt tttaagtgtt tgctgggtga gaggagagtc ccataagcag
       61 tctttgaagt gtcttttgct gaaggtaaac atctgaagaa cataaatagc tgctcttctt
      121 tccaatgagt gaccttgtca aagtgggtag aatggagaga tgggggaggg gtgctatcat
      181 gaaaaggaaa agcaataaag gattccttat gacagcaatt tgcacattta ctgctctttg
      241 atatgttaac tagattttgc aaaatggaat tctttgtctt ttagaggtcc ttgggcagtg
      301 atagctcaca gtcagaacaa tgttttgcaa taggcctaat gcatcttcta attaataagg
      361 taacttgggc aacctctgta aatcagtgac attatcatta taacaggaca caagtgaata
      421 gttgtttata aggaaggaaa gatg
//
LOCUS       KCOD01002394             712 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 266527pyr ultra-conserved element
            locus uce-2138, sequence.
ACCESSION   KCOD01002394
VERSION     KCOD01002394.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 712)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 712)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..712
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="266527pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>712
                     /note="ultra-conserved element locus uce-2138"
BASE COUNT          216 a          107 c          135 g          254 t
ORIGIN      
        1 ttgcaagaat aatctgttct gcatccacct ggagctttta ttttattaca ctttgtgatc
       61 taaaatttgg ctaaaagaaa aaccctcaag gttgacaagg actaggattg acagaactct
      121 ggctctttga aatccctgtt gtccatttaa attttaatgt ttctatcatt tgttcctcag
      181 tgtaaattaa cagccatggc agtgtgttgg gtttcttttc tgaagtcaag actttaaatt
      241 taattcaata gcctagattt acagctattc tatatttcac aaggcagaat caataatgtg
      301 actgaagtga agaagataaa aatttatggt atcttgcaat ttaatggttg aaaagatgca
      361 attggagaga tcataaattg tgaaggagtt tatgcttcat tgctcctgat tcagtgcttg
      421 ctgttagaac ttgatttgtg actattcaca aggtgtgatt aatggtgtga tcgatgcttg
      481 cttcagtgca gtaaagcagt tgtaatgctc ttcattagaa taaataaaat aaattgactg
      541 aggctttata aaaactgtgt aacatttaaa atctaaaatg tcaatttcct gttacaattt
      601 aggtttcttc aggcagtttc cacctacatc acatcagtca ttgtcattct ttttggatat
      661 tatagaaatc catgtgggtt tgggttagct ttatgcaaag ctcagtgaag gg
//
LOCUS       KCOD01002395             306 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 266635pyr ultra-conserved element
            locus uce-5512, sequence.
ACCESSION   KCOD01002395
VERSION     KCOD01002395.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 306)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 306)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..306
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="266635pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>306
                     /note="ultra-conserved element locus uce-5512"
BASE COUNT           70 a           79 c           79 g           78 t
ORIGIN      
        1 aaatacgata caaaaggtta agcagagcag ccggcatctg cacactaatg acatgattgt
       61 tatgataggt gtttgcttta ccctggagtg gtaacattat aattcatcca ctgctgaatg
      121 agtggggaca attaatgcag tcaatgtgtc ccacgtgttc cctgcagcat taacaaggca
      181 gctccaggcc cctcggcata cactgggctg aaaattgagc cggctctccc gttgaatgtg
      241 atcctgatta cctccgcggg ggccacctgc tgcttcgtgc ctgctggtgt gcgctggccg
      301 cctctg
//
LOCUS       KCOD01002396             627 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 266745pyr ultra-conserved element
            locus uce-918, sequence.
ACCESSION   KCOD01002396
VERSION     KCOD01002396.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 627)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 627)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..627
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="266745pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>627
                     /note="ultra-conserved element locus uce-918"
BASE COUNT          189 a          150 c          102 g          186 t
ORIGIN      
        1 caatttcata ctaagcaata acacttcatt ttacataagt tttatctgat gtccccatac
       61 agagctgcca gctgtacagc aaatgtgcag ctctcaaact gaggcctact aggccacagg
      121 ctccatcctg agatctgtaa ggcaccttgc tgtcattggc aagcgttccc tgctattgcc
      181 gctaccatcg ctccacacca cacacaactt aaaatcatct gattattaga atttgtggtc
      241 cacactccat tttatccttt atttaatcta tccccagatc acacatttgt ttaaatgttt
      301 tggctggttt acaaatcatg cagccatctg cacagtaggt gtgacaccat tttttagaca
      361 aaagttacat tacaaaacaa caaagataaa gtcatttgaa atgctttgat gtttgttact
      421 ctgcctggtt ccaactctaa gaaataaata gaattatctg tgtaaatcga tgaacatcta
      481 tgaaaaacaa cacccagcag aacgcagagc ttgctccatt acctacgtta atatcatgac
      541 agctgaggag agatgacctg gcccacttct catctctcct gtacagatgg ctattaaaga
      601 gaaagtatcc cttttgtatg gtccatg
//
LOCUS       KCOD01002397             795 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 266855pyr ultra-conserved element
            locus uce-6059, sequence.
ACCESSION   KCOD01002397
VERSION     KCOD01002397.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 795)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 795)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..795
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="266855pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>795
                     /note="ultra-conserved element locus uce-6059"
BASE COUNT          234 a          133 c          152 g          276 t
ORIGIN      
        1 agttgtagct gttccttact actatcatct ttatctcaaa gctgttcaga agtgaagaga
       61 tgaactttga gtcctcaatt agtaattaat ttgctttcac tattaacatg tattgtactt
      121 acagaacagt ttaacataac acagttaatc taagtatgta actactgaag ttgaaaatta
      181 tgtgcagatg ctgtaacttg aaaagtgatt tatgtgttca ctgttgattg cagttaaatt
      241 ctaaatcttc atggtcaaaa aatctagaag tggttttaaa tggatgatgc gtttttaatg
      301 tttcttctct ccctccaaag aacagcaata gtagtagatt taacaatacc atagactcat
      361 gactatgaaa tcgtggctat ttgtgttaac atgttgttcc tgttgttgat gtgatacaaa
      421 gctcctgcaa aacagctggc acagtccagt gcactggctt ccctcactgg actcggtaag
      481 tatgttcctt atttttgaga gggcttaaag ggggagttac acttttgcct tgcatttcta
      541 gaaattgcat tttgaaacta gattttaatt gcctgggagt atgggtcact ttctgataac
      601 tttttatcag cacctttcac aggtgatcct actgatatac agtgggatag ttgctggagt
      661 aaaggactag gcagtgatga gaatcttgcc ctaattttga aaatctgttt ttagataaaa
      721 aagtatgcta agcacactgc agtcttcaaa gaaaggtttc atgcttttct tctattttga
      781 tccatgcaaa ccaga
//
LOCUS       KCOD01002398             422 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 266966pyr ultra-conserved element
            locus uce-3789, sequence.
ACCESSION   KCOD01002398
VERSION     KCOD01002398.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 422)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 422)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..422
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="266966pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>422
                     /note="ultra-conserved element locus uce-3789"
BASE COUNT          133 a           93 c           64 g          132 t
ORIGIN      
        1 ccactacacc tatttgtgaa ataaatattt gatttgatct taactcattt ttccaaaatt
       61 aaaatcaaac atccaaaaca ctgaaaaaat aattttacct gtaaattgtt ttctgtgact
      121 ctgttccacc aaaccatatt gatgggtact cctgttttac acctgtcagc cagacagcca
      181 atagggttct ttgattttct tgcttttgat cccaccggaa ctatcctctc atccagcatc
      241 cccagtcgat acttcctggg ctatgaaaaa gaaggagaga aaccaggcca ctcctaacag
      301 ccctcaaaag ctacactaaa ataggattac actgtgatat gattctggat tggtggaata
      361 ggaaacaatt tgcaagtaaa atttaactga gactgtttcc tttcaatcct gactatttgg
      421 tt
//
LOCUS       KCOD01002399             412 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 267073pyr ultra-conserved element
            locus uce-2308, sequence.
ACCESSION   KCOD01002399
VERSION     KCOD01002399.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 412)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 412)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..412
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="267073pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>412
                     /note="ultra-conserved element locus uce-2308"
BASE COUNT          149 a           57 c           80 g          126 t
ORIGIN      
        1 ttaatataga aattacacag gaacagatgt gaagatgtca gaaaatttaa agtttgggct
       61 ttttaattgt tattgaatga tcaacatcaa agttaagatg aaagtgtaga tgatgagtca
      121 gtttggcaca gtgcaaagtt gttaatattt gacaggtctc agtgtcaaag atttcatgga
      181 ctgtcaaaat atgggcaaac aagtccttgg ggcagagaaa gagaaatatt tacattcccc
      241 agacatccag tagagtttca tttcttttga caccttcctt ctgtactaga ttcaaacata
      301 aaagaagtct gacaggaata taagatgcct caaaggcaaa cttatctttc agggaacaat
      361 aaggaaaaac ttttaaatag aggagaaata ttgatatatt tttgcttctt ct
//
LOCUS       KCOD01002400             423 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 267180pyr ultra-conserved element
            locus uce-305, sequence.
ACCESSION   KCOD01002400
VERSION     KCOD01002400.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 423)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 423)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..423
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="267180pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>423
                     /note="ultra-conserved element locus uce-305"
BASE COUNT          141 a           82 c           74 g          126 t
ORIGIN      
        1 tactcactac aagttgtttg aaatgatttt cagtaatgct gtaatatttg tatatctaca
       61 cagtcactat ctattccata tacacaaaca tccgcctacc cagaaaataa ttgtggataa
      121 ttcaatgttc agattcgata atggatgctc aaataaatat gagaattcca agcaaatttg
      181 tgcaaatgaa aaaagatttc ctctgacata atggcatggt gcaaggctgt ctgtaatgag
      241 ctgtaatttg tctggaagag cattttaaag gggttgatcc atccactgga agaccagcaa
      301 ctgctctgag agtagaagca atgagccagc ctgcctcgtc tcagaggaaa ttacaccaca
      361 agcaggccaa atttctgaca acttccataa attatttcgg attttcatat ttcaaatttc
      421 atc
//
LOCUS       KCOD01002401             635 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 267289pyr ultra-conserved element
            locus uce-3669, sequence.
ACCESSION   KCOD01002401
VERSION     KCOD01002401.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 635)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 635)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..635
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="267289pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>635
                     /note="ultra-conserved element locus uce-3669"
BASE COUNT          198 a          144 c          119 g          174 t
ORIGIN      
        1 tattttcaat ggcgaaacat ttgcaaataa acccaggctc cataaccata aatgtcatta
       61 ttcatggctg ccacaggtag cccggccatc aatgagggga cgcatgtaaa acatccctga
      121 ttatcaaacc atgtcacatt ccttctattc gatggcactt attgggctgc agattccata
      181 atccttcccc gagtcccttc tgcatttaat tcagttcagc cttaagtagt taaagaaact
      241 gttttcagtg gcaactaata actactgacc tacagtgaca ctgccctaca atgggcttgt
      301 caggcctgaa aaacttgtac caaagaagct gattaggact tcaagaggtt tgtagcaaga
      361 atcaatggct ggtctgtgct aatgctgcgg ctgcggcaca ggaatgataa aagtggaaca
      421 ccattagtta tgcctcatta agctccacag ccctcctaaa aagaaatttg tttagcctgt
      481 ccaaaatcta atgcagtttt aagctctctg tgttcaattt catagtacct caaaagcttc
      541 aataagataa aggccaaaga accaagaacg gtaccaaagc accaacagta aagttaattt
      601 tgaagcccga gttttaatgg aaagtgtttt tccct
//
LOCUS       KCOD01002402             819 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 267399pyr ultra-conserved element
            locus uce-7652, sequence.
ACCESSION   KCOD01002402
VERSION     KCOD01002402.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 819)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 819)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..819
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="267399pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>819
                     /note="ultra-conserved element locus uce-7652"
BASE COUNT          248 a          142 c          154 g          275 t
ORIGIN      
        1 aaacatgtcg gggaagggat ttacagcagt ttgcctctcc agacaggaac aaccaagtag
       61 ggaaatgttc tccctgcatt ttattgctga taccttcatt ttaagcacta ctcggctcag
      121 catacatggg tgttaaatat gctaggtcaa taaaatatcc atctcttctc taagcaaatg
      181 cgcaattctt ttaattcagt tttccaaact tcatttctaa atgtcttgga aaaatctata
      241 ttttgggagg cagctggaaa tgaactattt gcacgctggt ctatactagc agccattcat
      301 tttctctggg aatttttgtg taagctccct tattgggaat atgctaatgg caaccgccat
      361 gattactgat tttctttgaa tcattattcc tctgtgggca aagcaatcag aaagggagaa
      421 caggagattt acttcttgct tgtgtgcctt cttcaaccat ctgctctatc ctgattcatt
      481 tgaataagat ctgcagtttt agattcttta ctctggcatt ctgaagcatt ttaaagctta
      541 aaaggagtta atagttatct atcagtgtca caaacgtggt actgtgatgc attctaagag
      601 caagtttgcc ttctaatggt ttacagggcc agattaattt tattaaagta aaaaattaca
      661 atgttcttta acagcttcat tatttcagac aagtcttttg tgagcacatt tattatctgg
      721 agcgtggagt ataaaagctg gaagaaaggg aactaattta taaagcaaga acattttaaa
      781 aatggaaatt gttaatctag agtgcaaaat tgtgatcaa
//
LOCUS       KCOD01002403             732 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 267510pyr ultra-conserved element
            locus uce-1929, sequence.
ACCESSION   KCOD01002403
VERSION     KCOD01002403.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 732)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 732)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..732
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="267510pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>732
                     /note="ultra-conserved element locus uce-1929"
BASE COUNT          229 a          123 c          132 g          248 t
ORIGIN      
        1 gggaggtttc aatctgcaaa gatctatcaa tccagcatat tacatgcagg gagttttgtt
       61 tgttttgtta aataaatgcc tgtattcttc tctgtgctat aaacacatca gtgctcattt
      121 tctctatatt ctactttggg ccattctgtg taaaatcttt aattaaagtt tttctttgaa
      181 attgtcatca tcaaaccaga agaaagaaag taaaaaatgg aaggacacag ctgtgcatat
      241 atgaagtgct attcagtacc aaatgaattg gaacaaaata agtatcgtga ctgttatgct
      301 cttagttttg gctctgtatt ctcagtagca cagtctaact tgtcacttta tattgattcc
      361 atctgtttac actctgcaga gtattggctt cctacagtga acatttccta tttaccagct
      421 ggtaaagata ggcccaaacc agatagaaaa gaattagact attttcagat cctcataaac
      481 ataaaatcaa aaattaatgg gggaggggag aagggaggga gtggaatata tgggtctgat
      541 gcttttttcg tattgatagt caatccatta acaattttta gagaccttga aatttgtgca
      601 atgagcgcac ttttcactcc tctttacttt cttctttaca tgaacagcct gattgtaaat
      661 gtgaatcaat cacagtactt cagtaatctt taaatagaaa cagttggggt ctaaatggct
      721 aatatcatat tc
//
LOCUS       KCOD01002404             598 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 267619pyr ultra-conserved element
            locus uce-6167, sequence.
ACCESSION   KCOD01002404
VERSION     KCOD01002404.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 598)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 598)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..598
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="267619pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>598
                     /note="ultra-conserved element locus uce-6167"
BASE COUNT          171 a          106 c          123 g          198 t
ORIGIN      
        1 aaatttagca gagctagtct taattttcac tagtttgtga aaaccgtaat tgtcactcat
       61 tactgtagag aaataaattg catttctttc ttaagtcttt gtttgtttaa accctgtatg
      121 gttgcattta acattggatt aggtagggta agagtttact gagaagctgt atttgtacag
      181 agcccacctc ctgtagtgtg agcagtggta agtgaactgt ttctgtgttg ttcactcact
      241 cagtcagatc gaaactcagc tcaatagcat taaactagct cccatttgaa agatttgtct
      301 tacaaaaccc tgaaaactgc tctgaacgtg catacattga ttttgttgct ggaatctcct
      361 gagctttgat gaaaaggaga ctccacatgc aggtgaaaga gggtttacct cttcaatatt
      421 aaaaagagaa gattaaggat ttttgttcag ctaaggctga actaatcagt ggcatgtgaa
      481 ggtaagagac ctggcctcat gcctatagta tgataatgtt attttcttga gcaactttct
      541 ccagtagctc tgtctaccat tattcccatt tgcacaggta attgaatatc caggggtg
//
LOCUS       KCOD01002405             642 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 267729pyr ultra-conserved element
            locus uce-1177, sequence.
ACCESSION   KCOD01002405
VERSION     KCOD01002405.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 642)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 642)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..642
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="267729pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>642
                     /note="ultra-conserved element locus uce-1177"
BASE COUNT          162 a          162 c          145 g          173 t
ORIGIN      
        1 agtgtgagtt ggtgtagtct ctttgactct aaaatataat ttcctgaagt aaccttcatg
       61 ccaatctgtg attgcccgta cactgccaca tggccagccc atgctgcgga ccgaggagag
      121 ctctgtgttg ggtggctgct tccctcgctg cagctccacc actaccgaga tgccatctca
      181 gcgaaacacc ctgctctggt gactcctcct attccttgtg aggagagctg cctatctgat
      241 tttggagctc tggcaaaaag cctgagctca ttgattacag atcactgtta ataaagagca
      301 tttgtaatgc agcggtggtg atacaatctc cacacgccag ttcatgatgg cccttcagtc
      361 cccacaatta agtcgtccag caggcatgcc ccctggtaca gctgctttgt caatctcatt
      421 ttgtactaca aatgatctta gacccagtgt ttgacatggg gttttaacac caaagaaggc
      481 aattctgcaa cttcaaatga gcctaattgg ttgtgcgctc aggcgttcac tcaagctgct
      541 tcagtccatc agagagagat ttccaactaa ttgaacagct cagaaggaaa agaaccaggg
      601 aaatcacaat gcactgggcc gcttgagagg ttttttcatg at
//
LOCUS       KCOD01002406             691 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 267841pyr ultra-conserved element
            locus uce-7288, sequence.
ACCESSION   KCOD01002406
VERSION     KCOD01002406.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 691)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 691)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..691
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="267841pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>691
                     /note="ultra-conserved element locus uce-7288"
BASE COUNT          230 a          113 c          128 g          220 t
ORIGIN      
        1 aatgacaaca tttaaaagca attttaaaag ataagggaaa gacagaaagg gtgaagagac
       61 caattaacca atttttcttg gcctttctct catgcgcaga cacattctgt acaaacccct
      121 gttttgatgt attattttaa ttaatcccag tcttttgatt tctacgaagg ttagcaaatg
      181 taacaatgct cgagagtttc tttatcgtaa aagacacata atttcaagca tttaataagg
      241 tagatttatt ctgggtagtt tagtttgcac attcactcaa acagccctcc ccaaagacaa
      301 cattaaaaat gtgattagtt agctgccatc aataacacaa aataggaaaa cactctctga
      361 agggacagct ttgtggaggg cactgcacag tgtgtagtaa aaatatatgg cctaataagt
      421 ttacatttgc aggctcattt gttaaaactc ttgaatttct aatttgtgtc ggaaagataa
      481 atggatgggg cctcagtaaa gtgtgagatt aatactgatg gatggggatt cagatttttg
      541 ctagcctctt acttctgtac aacccagtag gcagtttatg gggaaaacca aatgtaaata
      601 aaaaaagagg acattattta ccttggtcaa ggccaattac cagttatatt gttcttttca
      661 actttattgt ttggatgtaa attatcctta t
//
LOCUS       KCOD01002407             554 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 267953pyr ultra-conserved element
            locus uce-2160, sequence.
ACCESSION   KCOD01002407
VERSION     KCOD01002407.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 554)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 554)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..554
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="267953pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>554
                     /note="ultra-conserved element locus uce-2160"
BASE COUNT          179 a          117 c           99 g          159 t
ORIGIN      
        1 ttcgaggcca tatggagtaa tatagcttta cttactgtaa taaatgaaca aaacatgtca
       61 ttcctaaact ccacaagcat ttacactttc agggtttcat ttctttgctc atatccctgc
      121 aatttaagaa agctatctac ggaagatttg tatttatact acacctattt cttgttgcac
      181 tcttctgggg atgccagaga tggttttcct cctcctcaac tttcgtctcc gctgtagtac
      241 agattgtgaa tgaacaagag agcagcgtat actagcctct ctgtcaaaac caactcctgc
      301 aacccataaa taggtctcat tagcctttag aaatagtaaa caaattttca tggctggaac
      361 acagtggagg tatgtgagct tggattaagc ctgtgaataa acataaggga gcccttatgt
      421 ggctcttatg taaattatat cacagtatat cacagtttta catctaattc cagctccccc
      481 tcagcagcct ggtctgccaa aaataacaga aggcataaaa agaacggaaa aaggaaagaa
      541 aatcagaaag gcaa
//
LOCUS       KCOD01002408             503 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 268065pyr ultra-conserved element
            locus uce-2033, sequence.
ACCESSION   KCOD01002408
VERSION     KCOD01002408.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 503)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 503)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..503
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="268065pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>503
                     /note="ultra-conserved element locus uce-2033"
BASE COUNT          174 a           93 c           68 g          168 t
ORIGIN      
        1 gacttaaaac aatcctaaaa cacattttgt attttctaac tataacctat agcccataaa
       61 gattttcaga aacattatta atttgacact gatacgcctc cttttctaat atcccaaccc
      121 tgcaacattt taaatgcaat taaaagtggt tatgaaagag tgtgtacttc cttgtgaagt
      181 aggaaatcac tcttgtgatt aacatgcaaa cgagctcatg ctggcagaat agattggggt
      241 tttaaaaccc caattacttt tgtatgatta tctatttacc cgtacacaga ctattttcat
      301 ttttcatcta atacaaagtc atcctgctta catttttagc acagcaatta atatttacaa
      361 taattatgac atcaagcgcc attgagagta cgccaagtaa atcatgtacc atgtatatgt
      421 tattaaaaca acatctatgg taatatattg cagaggatgg agatatatta ttggccttta
      481 tacacaatct agcctaatac aat
//
LOCUS       KCOD01002409             727 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 268174pyr ultra-conserved element
            locus uce-6669, sequence.
ACCESSION   KCOD01002409
VERSION     KCOD01002409.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 727)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 727)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..727
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="268174pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>727
                     /note="ultra-conserved element locus uce-6669"
BASE COUNT          197 a          166 c          150 g          214 t
ORIGIN      
        1 acagctgctg ttgaaaaggc tttgtccctc agcagccgtt tccagtgtga agggttctga
       61 aactagtaca gacttctgaa cagttttgtt tgtttgcatg atttggaaag gagtccactc
      121 cagaaatttt tcaaaacaag atgtagggta ttaaatggtt aagactaagt acgtgggcag
      181 ccaacgtatc tgccacttct aagagcaaaa atagcatgta ccttattaaa agcagcctga
      241 tagggtcagt agcccagtct cagaataccg cccaagaaca atttcaattt taatagcttt
      301 tactatgtat ttcataagca tgcccattga aattgagtca tcaaagcctc ccagttcctc
      361 caagacagat tttagcccga gagcttggag taattatccc actggatgtt agcctgtgta
      421 gctatttcaa cctcgttcat catttcaaac agctacatac tctgcttgct aatttcatca
      481 gatggattag cctctcttac ttgtctatct tttctggggg ctgaaatatt gccttcttct
      541 cctgttttaa taagctgagc aggcatgcac cactgcaccg ctcctgcctc ctatttcttt
      601 cagctcagag aatgatcttc tgggggaaga gctgggacta aatgtgaagg tgaaaacttg
      661 gccaacctgc aggctggagc cagcagcttt cagcccaagt ctgaaaacac agtcttgagc
      721 ctatctg
//
LOCUS       KCOD01002410             544 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 268281pyr ultra-conserved element
            locus uce-2959, sequence.
ACCESSION   KCOD01002410
VERSION     KCOD01002410.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 544)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 544)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..544
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="268281pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>544
                     /note="ultra-conserved element locus uce-2959"
BASE COUNT          128 a          121 c          144 g          151 t
ORIGIN      
        1 agcagaggga tgggaccagg ctcacctgct tgaccaaagc gcacaacttt aagaaagcaa
       61 aacctaaggc ggacccggtg agaggcagag taatagtttt ttaaatgggg aatcacactc
      121 cggagtcctg attccctttc tgtgattgtt tcagacttga agcaacaggc cagcgcggct
      181 ggccgagcgc cctttgatcg tgtaaatatc ctgctatttc ctattttaat gttcttcaga
      241 tttagtactt gtaaataaac acatgcatca aggagagatt aaacattttt gctaaagctg
      301 gtgttttgcc tgtgtttttg ggggtgatgt gggtgcgtgg ggcaggcagc tttggaaatc
      361 cgtggctgtg ccaggggatg tgatgggcca gcaacacgca tatgtgggtg tggtcctgaa
      421 ctctggttgt ttacaccccc ccaggctctc gcagaatata gatgacttcc ccatcagccc
      481 ctttcctggg tgactcatgt ttgctttaaa ccatttgatt ccacttgctg atcagacgca
      541 gagg
//
LOCUS       KCOD01002411             812 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 268391pyr ultra-conserved element
            locus uce-6446, sequence.
ACCESSION   KCOD01002411
VERSION     KCOD01002411.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 812)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 812)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..812
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="268391pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>812
                     /note="ultra-conserved element locus uce-6446"
BASE COUNT          278 a          123 c          155 g          256 t
ORIGIN      
        1 agatacctcc cagcatcatt tttaatgtca ttacaatatg caggctctgc agtttggcga
       61 aaataccaga cagctcataa aaaactgtag ctcttatggc actgcagata gcagtttctg
      121 tattagattt gtactacttt aatgctgcct tttctatatc tcaaggctgt ttcatgcaaa
      181 tatttaagct taggtatcct cacaaacaag catccataac attgcagtaa ctttgtttta
      241 aaagaaagac ttttgaacat gcaggaaata ttagtacatc aaacaaagtg aaagacaagg
      301 tagtttaact tgttggtttg tttgctgaaa ctctaaagta aatatactgt agctaaaagt
      361 gttccatttt tatctgcctg ctgcagtaat ggctgtgtta cttcagggct tacacttcaa
      421 taattgatca gggtttgtat agcaccggct aagagcaaaa ataagagtgt tgctttgaac
      481 aaactgctgc aatgttatag cattaggcac agaaacaaga ttctggaaat atagatatat
      541 aaaaaacagg aaaaagatgg ataagttgga gtggtaaata ctgcttcagg ctagaaagta
      601 atgagaattt ttccatagag agttttgacc tgctattcaa aaattgtttc ttgtcttaat
      661 aaatcctaaa agtgtaattt acttgcaaaa gggaaagaac aaaggcacca aaattctttt
      721 gataacaaca cttgttaagg ttgataagtt gggtttcaaa tgtgtgaaga aaaatgtgtg
      781 acagtttgtt ttaaggtgac aacctaagtg tt
//
LOCUS       KCOD01002412             607 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 268501pyr ultra-conserved element
            locus uce-3481, sequence.
ACCESSION   KCOD01002412
VERSION     KCOD01002412.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 607)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 607)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..607
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="268501pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>607
                     /note="ultra-conserved element locus uce-3481"
BASE COUNT          192 a          117 c          119 g          179 t
ORIGIN      
        1 tattaacaat gaaattgaat attgtgacct tcaatctgtg catgtacaac aataatgcat
       61 gaaaggaatt ttattgaacc cgagtacgtg cttgctaaat ggttgctagt actttattac
      121 aaaagcagct gtttagtact accttgtccg aaaatttcta tcgattgtac tctgtgctgt
      181 ttgcaaaacc aatctgatta aataagcagc tacgcatcat aaaggcagtt ttccttggat
      241 ttgtcataag tgcttaaaaa aataaattat gtcctaaggg acaagtgaca agggcccagg
      301 aggctgagga aaactacctc ataaaacggg agctggccac catcaaacag cagagtgatg
      361 aggccaatac taaactggag caagctgaga ataccatcag ggagctccag caacagcagc
      421 aatgggtaag gagcctggca gcacatcctt tttcactcac ttatgttttc ctcatcatta
      481 catgacatgg tctctgtgct gtctttgctg ttcattgtga tttgcattct taaaatgaca
      541 caaatttgat taaatcaaat tttgcttcta ctgatacatg agattcctaa ccgatgtaag
      601 ttatgag
//
LOCUS       KCOD01002413             760 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 268608pyr ultra-conserved element
            locus uce-7138, sequence.
ACCESSION   KCOD01002413
VERSION     KCOD01002413.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 760)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 760)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..760
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="268608pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>760
                     /note="ultra-conserved element locus uce-7138"
BASE COUNT          222 a          184 c          146 g          208 t
ORIGIN      
        1 tttaaggggg ttagaatgaa gacacactgc cggtgtacag ggagcacaga aggggtaatt
       61 taaaacccat gtttttcctc cccctcaccg aaaacatgcc cagcattgtg cagctgtgct
      121 gccagcttca tcactccctc catctccact cttgctaatt aaaaggttga tcacagaaca
      181 atgctcttct cattaatttc ggctttctga ttgggcagga ttcccactcg ctccgcctga
      241 tcttttccac actgctgaag ttaatgtgac aggagcccga agatggatta cccgctgcca
      301 tattgcccat cacctccaat cagcagctat cggggtaaac tgattgttct aatttgctct
      361 cattattttt acaatatcag gagaaaataa cgcacacagc tcactgtcaa agccgtgaaa
      421 atcagccatt agttaaaccc agacactgag tggctttatt agaagcactg cagtttattg
      481 attcagcttc ggtaaactaa gataatacct gtcctcttta aacacacttt tttaggtgca
      541 cttatgtagc aagaaaagga tacttctgga aatgctcgct gtctcagcct gttattttac
      601 gctggcagac aacaaagatt aagaacaatg gaagcttgac ttccacataa agaagggcaa
      661 aatatgcagc attatccgca cggcagcctg catgcacgtc tcagctactc ttctacagtt
      721 taaataaaaa tcatctcagg actagtatga caggtgaata
//
LOCUS       KCOD01002414             955 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 268720pyr ultra-conserved element
            locus uce-2010, sequence.
ACCESSION   KCOD01002414
VERSION     KCOD01002414.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 955)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 955)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..955
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="268720pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>955
                     /note="ultra-conserved element locus uce-2010"
BASE COUNT          308 a          163 c          155 g          329 t
ORIGIN      
        1 tatatattga caaatatttc taaaaaatgg attggtattt ttgctgttaa ttgtttcatt
       61 actgaccttt acctctgtag acatatgcag ttttcgtttt tttgggagag actttcaaaa
      121 tatttttttt ttaagtgtcc aatgctcagt gctagcagtg acatttttac agtctattca
      181 gaagcatata tttcactctt ttgtatctca tttctttcta tttatttaaa acaacttagc
      241 atggaaaatc ttgcagattt aagtgacagt gatgatgtac aatatgcata aaatgagcct
      301 gtccctaccc atggtgtgta ttgctaggga ctccattgca atatttacag ttaaactaaa
      361 ctttttcaaa tgaagcaaaa ttgcatttgt tttgcagatt tgctcatcat taaatgtgaa
      421 acatttcaca tttgtctttt tgagtaattg gctttttaaa atgataaggt gctctgaaca
      481 cttgttatgt ggataggtct gacgttgtat cccagaaatc catatgccat acagacagaa
      541 cagaagaaag atattcacaa gcatgtcaca gattggactg aagcaagcca aaaaccaaag
      601 tgccatggca ttaacaatag caccagattt actgtcacga ttgcaatctg tgctgtatca
      661 tagacagaag gagaactttt gataggtaac acctcagtgt tttttaaatc tttttggcaa
      721 attatcattt tcattatatt tttgcctgcc atataatatt attataatgg tattaagtca
      781 ctcagacacg cacacacatg cacacataca aagtttatta gccctcaaca aaagggctga
      841 tttacctcct ctgttcctca acaaaaggaa ggtattttat taaaaaataa ttttagggag
      901 catcatccac aaaacgagca gggatttttc caataggcat taagttaata aaagc
//
LOCUS       KCOD01002415             573 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 268831pyr ultra-conserved element
            locus uce-5600, sequence.
ACCESSION   KCOD01002415
VERSION     KCOD01002415.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 573)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 573)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..573
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="268831pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>573
                     /note="ultra-conserved element locus uce-5600"
BASE COUNT          177 a          107 c           86 g          203 t
ORIGIN      
        1 ggctggtgca tctttgtcat gattcattat tcctaacaac tatatcaagt gttgcaatta
       61 ctgcacaata caaatttaac tctataatac ttctagattg gaaagagaaa aataatatat
      121 taagtgcttg tgatatcttt atgtataagt ttgagaatca ttaaatagct gtcactcttc
      181 cttcttcctc agcatcaatt actccactct ggttttactt actccactct gtataatgag
      241 tccctagagc atgtttcatt gcgggagaat gaacacattt ttcacttgcg gtcagtggga
      301 tgtggttaat ttgaaatcac ttaaactatt atatctgtca agcgtggtta ttttattttc
      361 aattcacatc agtgttttag tatgcatgcc ggttactggg ttaaactggc agattaattt
      421 ccaagcattc tgttgcaatg ctcttcatca ctatctttac atgcaggctc ttgttgaaac
      481 ttaatacact cctattaaaa tttacttcag agaaatctac attcaatata aacactcata
      541 tgataaacaa cactcaaaaa gatggcaaga tca
//
LOCUS       KCOD01002416             664 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 268942pyr ultra-conserved element
            locus uce-5218, sequence.
ACCESSION   KCOD01002416
VERSION     KCOD01002416.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 664)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="268942pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>664
                     /note="ultra-conserved element locus uce-5218"
BASE COUNT          207 a          140 c          130 g          187 t
ORIGIN      
        1 tgtggtttgc agaaaaaagt cttttgttta ttcaaattaa cctataagta cacaatttca
       61 caaaataaaa gccagaagcc ttggtaggat cagaaggaga gaaggggact cttatgcact
      121 aaggaaccag ccctatttct tattctgagg cttcataatt ttaaaaaatg tgacagctaa
      181 aacccactgg cacatgctgc aaagaaggat gtgataaaat aatgctactc atcttcaagg
      241 ctgtcagttc agcaatcagt acttctattc atctctgcgg cctgctaact cagtgctacc
      301 atgcgataga taaaccctaa tccaagtgac agcgttcaaa tcaggactga tttgattgtt
      361 cacatatgat accacaagac accagaagcc taaagagttt ataaaaatgc ctggatgtct
      421 cttgtaggca cacttcccgt cagaatgtct tgcagtgtag gatacaccag ctcttaaacc
      481 aggggtaatt tgtaggtcat gaaaatgctt tggtggcaca gtcagttctt atcacaatct
      541 aactctagct ggagcaggga atgctcaaaa ataaaatgtg gttcagacct tgtgaaaccc
      601 acctattctg cttttaagtc tcccttgcag gaagtgactt ttctttctct gctgagacca
      661 gact
//
LOCUS       KCOD01002417             721 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 269053pyr ultra-conserved element
            locus uce-5690, sequence.
ACCESSION   KCOD01002417
VERSION     KCOD01002417.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 721)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 721)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..721
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="269053pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>721
                     /note="ultra-conserved element locus uce-5690"
BASE COUNT          202 a          147 c          156 g          216 t
ORIGIN      
        1 gcagcgtata ccccactgtt caaatctgtg gcaaaatatt ctacagagag ctacttaata
       61 aatatcaact tgctccaata gtcattgaga aatacctcaa cagatagcaa tcaatcgagg
      121 gctgagttgg gaaaaataca aaaggacatc aaagaggttc tcattcccag tctattgctc
      181 tatttaaggg tcctataatt cggtgaggtt gtgtgctaaa taatttgtaa gccttcagaa
      241 catccaggtt attgtttgtg gacagatggt gcatcacatt ttattgctta ttccttctgt
      301 ggtttctcat atgcaggact gatgtgcact ctgaagtctt tgtttccttg ctaaaatctc
      361 taatctaaaa caggcaatca agcacacaga cagtgcttca gaaagcataa tcatactttt
      421 aaaaaaaaaa catttcagct gcagttagga agcagatgtg ttccctgaaa atgtaaaagg
      481 ttatcagaag tattaaaata gggaaacgga attcgggagc gccagggaga gcatgtattt
      541 tctccctgta ctgcagggta ggtgtgcctt ttcctaggct acctgctttg tatctggctc
      601 tctgcggagc tggtgtagcg aaagccttca gagactggct tttgcttcca cctttcccct
      661 ttggcagtct ttgtctttta caggcaagga gcagccgtgt tgtgatcctg gaaccactgc
      721 t
//
LOCUS       KCOD01002418             473 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 269162pyr ultra-conserved element
            locus uce-6843, sequence.
ACCESSION   KCOD01002418
VERSION     KCOD01002418.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 473)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 473)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..473
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="269162pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>473
                     /note="ultra-conserved element locus uce-6843"
BASE COUNT          156 a           69 c           86 g          162 t
ORIGIN      
        1 ttttgccaac cagaaaaata tgaagagaac ttatctgaat tctgcctgta taaaataact
       61 ttgattgtta ttaaaaagca cataatcact aatttccaga gaaatatgaa tattttctaa
      121 aaataggctg agatctgctc ttagtagcat tgtatcctag aagcaggaaa ggctctagag
      181 agattacttt cacttttccc tagatatatt tagtgtacta actagcatag ttaggatatt
      241 atttttcttt ggttttgtca gtagcatgtt tgaaataaat tttattaagt ggtagtgtat
      301 gtaacattgc attgtgggta gcagtttcct gccttaacct agccacatcc tcagctgtta
      361 tatgagacaa gtttcccata ttttctgcaa gttgacagaa aaaatactga caggacaaaa
      421 tagctaggag gttaggatga tgttattgac tgtttagaat atctaatcaa agg
//
LOCUS       KCOD01002419             595 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 269270pyr ultra-conserved element
            locus uce-587, sequence.
ACCESSION   KCOD01002419
VERSION     KCOD01002419.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 595)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 595)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..595
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="269270pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>595
                     /note="ultra-conserved element locus uce-587"
BASE COUNT          188 a          113 c          105 g          189 t
ORIGIN      
        1 ttacgtttat tttttattta catacacatc aacctgacaa aatgaggttt atgctttctc
       61 cactttttag tttccagctg actatcattt tcttttaaga ttaaataagt aatttattga
      121 actgtaacat caagtattta ttaggaaatt gctgggtaat tttaactgta aaaacataaa
      181 tctgcatcca aggcctccag taactttgtg cgactctgca ccattaattt cttccagagt
      241 gacattctga tatgagctga acagatggaa ttgcaggatt gttctagcaa atttatcata
      301 aaaaatgcat ccgacacctg tgtaatttgc ctaatcattt tcctaataag ctcccaccat
      361 taattatgca cgatttccac aatgcaatca agataaaagt aaatctgatg acttaatacc
      421 cttcaaaata attggttcac ccaacacaag gcctcctttg ctttccatag ccattccagt
      481 taattagaaa aagggtgcac cctgtaggag tcagcagaat ggagcatggt gggaggcagg
      541 cctgctggtt ttttgggcag gagtcaagga tattaactca tgaaagagag gaagg
//
LOCUS       KCOD01002420             611 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 269382pyr ultra-conserved element
            locus uce-6344, sequence.
ACCESSION   KCOD01002420
VERSION     KCOD01002420.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 611)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 611)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..611
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="269382pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>611
                     /note="ultra-conserved element locus uce-6344"
BASE COUNT          225 a           99 c          106 g          181 t
ORIGIN      
        1 gtatagccag ccacttacta cccagtgctt tattttctcc gtatagagtg ttttggggag
       61 taattttaac agtcaagtca gagtccacag agaattgatt tttgtgacct cacatattgt
      121 aacagaaaat tatagcagga aatacaccat taagtgataa acaaggaaac atggatacaa
      181 ttactttcag aacataattt tatccactct agttttgaaa atgaagagat agtgctgact
      241 ggaacacctc aattctgaat gcaaactgta caatctatta tattaaacaa agtcaaaagc
      301 aatgttgaag atcttgaatc tattcaaggc atgcacctca ttacagactt agcaaattaa
      361 aacacaaata ggattagaaa agaataatgt aacaatctcc cactatggtc cctggagcat
      421 taagtcataa attgggtttg cattaaattg tgcctgcagt attgaattca gggaaagagc
      481 tataggcgga agataaagct tgctaggcta gctaactttg ttgttttaca caataaatac
      541 acaatgaatt tgttggaatc taaaaaggca tattcaaaca tgtatttata tctcaattag
      601 aaaatgcaga t
//
LOCUS       KCOD01002421             564 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 269491pyr ultra-conserved element
            locus uce-724, sequence.
ACCESSION   KCOD01002421
VERSION     KCOD01002421.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 564)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 564)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..564
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="269491pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>564
                     /note="ultra-conserved element locus uce-724"
BASE COUNT          149 a          114 c          109 g          192 t
ORIGIN      
        1 ctccacactt gctttatttt gctaaatagc ctatgtggaa aacaatttac ttttccctta
       61 acccaaccct gttccattct gttttggttt ctggggttct gttgtcattt tatcctaaag
      121 tgctgtttcc tcacatttgc atctaccagc ctttttaatg tgatattcca tttaaactgc
      181 cttttaattg tatgtgctgc cttggcagaa catgactgat gtactagcgt taattagggc
      241 tccagtcagc agcctatgcc agctggaaac tgagaaacaa gcgtaaatta ttctgtcatc
      301 aatcagctca aaaatgtttg aatcactaat tagtttgcaa tttgggtgac agtttatctg
      361 acgcaggcgg tgtcagaaac ttcagatctt agatgaataa tttgccagca acaagcacat
      421 attccctgct tttaaataca tgaaggttta tctgcatgtt gaaaggtggc tcagcagtct
      481 tcattaactt ccaactggga ctatgtaaat caggaatcag tgtgaggcac ttcagtctgt
      541 ggtggcttag cagatgatat ttag
//
LOCUS       KCOD01002422             665 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 269597pyr ultra-conserved element
            locus uce-7053, sequence.
ACCESSION   KCOD01002422
VERSION     KCOD01002422.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 665)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 665)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="269597pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>665
                     /note="ultra-conserved element locus uce-7053"
BASE COUNT          214 a          113 c           99 g          239 t
ORIGIN      
        1 tattaaaatt cttaaacttg ttgaggcttt ccacaacacc ttccccaggt tttaattggt
       61 tttatctagt tccataagag agctctttaa aacaaatcaa agtgtcttaa atcacatgcc
      121 ttacccatcc agagatattc cttctataat ctggcaagtt ttccgaggaa cagaaatttg
      181 aaggttctca atgatgaatt aaaagacttg gcagaagata atttatgtgc cttttgatgg
      241 gctcagtttc aaaatgacaa aataacagtg ttttgtaaca gaagggttaa atcttaatct
      301 cagaggttta caaagctgct agtcgcagtc tccttaaaat ttaatatacc tcgttaatgc
      361 ttacttgcaa acactgaagg atttttatga ttataatcat gtgttacagc acctagtact
      421 gtttctaagc agcatactaa tcagcttaat gagatattac tgcacttttt gttgactaaa
      481 gcaaaatccc ttttattgtt ctaaagcttg tcctttattt tttcccaaaa cattatcttg
      541 ttttattata catcagtaaa tatcatacca tcggtttttt gtcaaatcat aaaactatct
      601 ttctcattgt agaatgtgta atatattgaa tatggttaat ggaaccgaaa gttacaaatg
      661 gattt
//
LOCUS       KCOD01002423             605 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 269707pyr ultra-conserved element
            locus uce-6068, sequence.
ACCESSION   KCOD01002423
VERSION     KCOD01002423.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 605)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 605)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..605
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="269707pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>605
                     /note="ultra-conserved element locus uce-6068"
BASE COUNT          180 a          134 c          121 g          170 t
ORIGIN      
        1 aagactgggc agtcatttga atcagtgagt gacaggctgg gccagctctc tgtatacatt
       61 aataaattag aattttaatt gtgtctctga ctgcaggagc tgctccagta ctttaatacg
      121 taccaacaat tggctatgtt atggaatccg ctatgtggcc ttcactgttg acctctgcaa
      181 cacaattccc agtctgacta cggaaactgt ttggtttgat cctttcaact tatttgaatc
      241 ctgacaaata agctcacagc tgaaaggtca acacagtcat atttcatcct ctggagctat
      301 tcttaagaca tctgcacaac aaagcacttc ttttagtacc tgacactgga cctagccagc
      361 acaatctctc attaaaagtg tccccagtgg aagagtctat taaaaggcat atggatcagc
      421 tatggattta ccaaataaaa tatttttgaa agcattaatg taacgctttg gattatggct
      481 ctcgacactg ccaataaaac gtatatttgc ccaatgacaa aatgcttcat actttccaaa
      541 agaataacag cccggctgta aagcgcgagg tgttgtccag cagccggagc acaggggtgg
      601 gagcc
//
LOCUS       KCOD01002424             440 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 269811pyr ultra-conserved element
            locus uce-1889, sequence.
ACCESSION   KCOD01002424
VERSION     KCOD01002424.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 440)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 440)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..440
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="269811pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>440
                     /note="ultra-conserved element locus uce-1889"
BASE COUNT          145 a           84 c           93 g          118 t
ORIGIN      
        1 ttttttttgt aaatcaacaa aacgcagcac caggcagcat gtgcctcatt ttatcaaatg
       61 gtacacagct tggtaatggc ctccccagat aatttgaact gatctatggt gatgaccagg
      121 gggacggcaa tgattgtcat gttagtaaaa aaaatcaaaa caatcatgtt acgtcagttc
      181 taccattaaa agacttgctt ctctgcaaat ttttgcgctc agtaattaat actctagggc
      241 ttgcagtttc caagctggta ctccaggcac agagatgcca ctcacctgat aattatttca
      301 ggaaaccatg cacgaatgaa tgtgattgac aaatgcagca ttgctgtaat tgcctcaagc
      361 agagtcagtg agaaaaggag aaagaaagag gaaagttaac tagttatgtg cttacctatg
      421 agactggaag cacaaaggta
//
LOCUS       KCOD01002425             477 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 269917pyr ultra-conserved element
            locus uce-4095, sequence.
ACCESSION   KCOD01002425
VERSION     KCOD01002425.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 477)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 477)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..477
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="269917pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>477
                     /note="ultra-conserved element locus uce-4095"
BASE COUNT          150 a           80 c           99 g          148 t
ORIGIN      
        1 acacagagcc cttagtgacc ttgctagtcc tctgctgatc acttgtgttt gttgttgtag
       61 gaaggcaaac ataagtatag aagtgttatt gaacagaaaa cccttcaaaa atttcaccag
      121 tcttttgtat tcaagtcgca gagcaatagg gggccgccct gctcagaaag catacttatg
      181 tgagtattaa gaactggctg agataagaag taaagcttaa gagaccttca tcattagctg
      241 ctagtggtgg agattagtga tcctactaca ggattacaga tggaaagagt gctagtgttg
      301 gttaattgtt cattaatgct tgtaaaataa gatagtgcta gtaaaacttg ttattgtctg
      361 ctctctcaaa gtaaagcaaa actggatctg cttgtcaata gctgtattga tgttaacagg
      421 aacatattta acagatcatt ttacagtgta aactactatc cagtctttca acattta
//
LOCUS       KCOD01002426             790 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 270028pyr ultra-conserved element
            locus uce-7574, sequence.
ACCESSION   KCOD01002426
VERSION     KCOD01002426.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 790)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 790)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..790
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="270028pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>790
                     /note="ultra-conserved element locus uce-7574"
BASE COUNT          230 a          171 c          152 g          237 t
ORIGIN      
        1 atcttcctgt gttttaataa aactttttta ctcactcaat tacaatatca ctatcagttc
       61 aaattacagg tcaaagatat ggggcttaat gtatgtacag ccagttctct tctcctaata
      121 acctgtcatt cccaggattt gaatgtcaga acagagcctg ccgtggtaat gctacccggc
      181 agcacagtga tgaaaacttt ggataaatca tgaagaacat tccagatcca aatcatcaga
      241 aggttactgg ggagagcctt tcatcccact ctgacccctt gatctgacaa gtgacaccta
      301 caaaatgaac agctctccag cttaaattgt ttaactgtag cctgatcagt tttattatct
      361 tgctaatccg gatatcagcc atttcatcag aatggaagat atgcatatca tgaattattt
      421 tgacaccaag accttttaat ttttgccagc aatatttcac tacaccaatc agggcctgca
      481 gtcagtgatg ctgttcgcct cctgggatgt cagaggacag tgcactcctg acagcaccaa
      541 atcatctggg agctgtaacg agctattgct gcaattatta ttatctcttg tagtcatgca
      601 tttcattaca gtgcaggcag acagaggttc cagttttggg ccactcttat ttaggaatct
      661 ctgccatttt atgggctgta gggctctgta gtgtaatttc ttttctcctc ggtagacaag
      721 gataggtgaa tttctaataa aaacaaaaca ctagcaaggt gctgtagaaa gagggagcac
      781 aatacagtac
//
LOCUS       KCOD01002427             399 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 270132pyr ultra-conserved element
            locus uce-5469, sequence.
ACCESSION   KCOD01002427
VERSION     KCOD01002427.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 399)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 399)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..399
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="270132pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>399
                     /note="ultra-conserved element locus uce-5469"
BASE COUNT          122 a           78 c           87 g          112 t
ORIGIN      
        1 tttcctcctc cagctttctg cctatgggag catctgtcaa ggctgagtca gcacctgccc
       61 aggaaaacct cataaacatg ctagaagaca tttcattttg tcatcaacct aggcacattg
      121 gatgagtatg caaataaggc accacaagaa caggaccaca gcagcagtgc taatgctcta
      181 agtgatcttt cagtgtaatt agaatttgtt tcatcacact aatttgacat ggcaaattag
      241 tgaagctaag ataagggggt ttagtagagc cagggcgctg gtatgtacac agaaacttgt
      301 cactaagtcc atttgcacat gggagttgtg taacattgca gagaagtgac aattagcaaa
      361 agctctggaa aatatcagtt tgttttattt ttaatctgg
//
LOCUS       KCOD01002428             200 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 270224pyr ultra-conserved element
            locus uce-6465, sequence.
ACCESSION   KCOD01002428
VERSION     KCOD01002428.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 200)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 200)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..200
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="270224pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>200
                     /note="ultra-conserved element locus uce-6465"
BASE COUNT           32 a           57 c           72 g           39 t
ORIGIN      
        1 gctgcccttc ccccgccggg gccgggcgag cccttgataa accgttcggg aggagttggt
       61 gtcagggctc cagtggcgca atcggttagc gcgcggtact tatacagcag tacaaagccg
      121 agcaatgccg aggttgtgag ttcgagcctc acctggagtt ttgggacttg acggcgctcc
      181 ggagccgtgg cggccgcgtg
//
LOCUS       KCOD01002429             585 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 270324pyr ultra-conserved element
            locus uce-1375, sequence.
ACCESSION   KCOD01002429
VERSION     KCOD01002429.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 585)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 585)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..585
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="270324pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>585
                     /note="ultra-conserved element locus uce-1375"
BASE COUNT          175 a          116 c          108 g          186 t
ORIGIN      
        1 aattattttg taaaatttaa gtcatggagc aatgaaacct taaatatttt cacctgtaac
       61 agttttttcc tatgcgtgtg tctgcatgta atcagtctgt accctgaaca ccttgctttc
      121 ttgtgttgca ggtgtattga cgggcttgca tcccttcaca aactatgctg taaccctaac
      181 tgcttgcact ttggctggct gtactgagag cttgcatgca ttgaacatct ccactccaca
      241 agaaggtaaa gtaatttcaa aggtcttgac ttccacattt cagtcatgaa taataaaaca
      301 ggagaagagc taaatgctgc aaagccattt gctggaaaac cccaacctaa tttgatgaca
      361 aagtgcattg ccagaccata attgctccat tttttggggg gtgcgaaaat gaatcaaact
      421 ccataccctt taatgacatg catctttaat agctgtaatg cagattaatg ggctttttaa
      481 ttgctgttac attgttcatg caagagcctt gtcattaata tgaagcatct gaaagattaa
      541 tgaaagcttc ctcattttac tatggctcag aagtaaatct agaga
//
LOCUS       KCOD01002430             620 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 270437pyr ultra-conserved element
            locus uce-7173, sequence.
ACCESSION   KCOD01002430
VERSION     KCOD01002430.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 620)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 620)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..620
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="270437pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>620
                     /note="ultra-conserved element locus uce-7173"
BASE COUNT          131 a          147 c          143 g          199 t
ORIGIN      
        1 cacgtttccc attacggggt gaccgtcgct tttaacggct gagatggttt aaaggccact
       61 tcaggttttc agtacctttt gtgtgagact gtcagcgccc gagccccggc catgacatgc
      121 acagaccggc tggtttttct ccttcagatc agcgcctctg gacagcttct ctttctctgg
      181 cagccgcttc aacctgctct gtcatcttcg agttcaatat ctgctgctct gaagtgggat
      241 gggttggacc attgtatttg gtcttttgac cctccatgtt gcccatgagc agtgaaggat
      301 aacttttgac aagccatgtc agatgtgaca ggcaatctag ttgggttgag tggaaatgtg
      361 ctgtacaagt ttgaagcctt agttgggggc attttcctgg tgttcagtgc atttaaattg
      421 acaccagacc tcagtgttgt tccttgcaga gccgcatttc caatgttatc agctcaaatg
      481 aaaacctttc atatgcattt tgcatctcat tgcaccaatc caaggcaata gcccttccca
      541 gggcatccct caggaaccac attaaattta ggatttttat tttcgtgttg gaggttatgt
      601 tttactgttc catggatttc
//
LOCUS       KCOD01002431             807 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 270545pyr ultra-conserved element
            locus uce-871, sequence.
ACCESSION   KCOD01002431
VERSION     KCOD01002431.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 807)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 807)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..807
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="270545pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>807
                     /note="ultra-conserved element locus uce-871"
BASE COUNT          251 a          131 c          164 g          261 t
ORIGIN      
        1 ccaaggaaca aagaaaggtc aggtaaacca tctgtgtaag tcagagtaat agtacctgct
       61 gtttggttta tgcagtgata ctgctttatt attctctaaa atggaactta tccgctagat
      121 caagttaaaa ctaaaggaaa gctgtggaga tggcaaatga cattgcatgc atctttcaga
      181 gtagggcgac agatgtgttc cttgattttt gaatagtttg ggtttatttg tggagatagt
      241 gcaccatcaa agaacatata aagggggctg agaaaaatca ctgtttaata ttgcagaatt
      301 tactgcttcc attctgacca tgagcctaaa tttacacaat gaaatttgat tatctctaat
      361 aacaatatta gatcctgcac tggatggatg agaattgagg tggttttgtt gattgcaagg
      421 gtttaatgtt gcatttcaga atctgatgtg gtttagcctc ccttccatta actggaaaac
      481 ccctgaggtt ttacaattat ttcttaaaga taatacattt aagattgcat tggtaggctg
      541 aagaaaagtc ataaaggcaa gaagggaagc ccttaataac tcttgagatt cagacatgtt
      601 cagcagttag attggctctg acttcaccaa gggtcgacaa tgtgtcattt ccatgaagcc
      661 aaattgccct ctgcctatat gatattaatg tgcaaatcaa tatttcaggg attaaatttc
      721 ccttcttcat tttttatggt ttctacctca ataagtctca agtctattag aagaggctgg
      781 atgatttaaa atctttcact gcagaat
//
LOCUS       KCOD01002432             668 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 270656pyr ultra-conserved element
            locus uce-3879, sequence.
ACCESSION   KCOD01002432
VERSION     KCOD01002432.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 668)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 668)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="270656pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>668
                     /note="ultra-conserved element locus uce-3879"
BASE COUNT          199 a          136 c          111 g          222 t
ORIGIN      
        1 ataacatggt attttaaaac tagctttaat ctataaatta aatatcataa tatttaaaat
       61 attttaccct gatggaaaat aactgtttat cactttgctt ccttatagta tccagggaga
      121 ctctattgat ggaaaacctg atgacaaaaa attctatcgg tctgaagcaa cttttggaga
      181 atctgattag gtctcatgct gcaatactag gtattccatt tttgccaaag ggccagctat
      241 tattattaac atcatttgtc tgaatcatta ctctgcacct tggttcagca aacactatga
      301 agatggcatg gtaataaatg accgcaggat tctttcctgc ttcagcctgt ttttatctgc
      361 cacctctcta ccgtcagctc catctttctg aacctctctg aatccccaaa agggacgggg
      421 catctatttg ttttccacta ggttaccact ctgtctattg ttgtttgcac taaagggtac
      481 gaattcaatt cattcttgtg acataaaagc actgatacag taaatttttt gcccaagaga
      541 aaacacaaag ttgctgaata tgggctaaga tgtgaagctc ttgtatgtac gtgaaggagc
      601 tttctgagac agtcttgctc actaaacatt gttttttctc caccacaatc tagacaatca
      661 cattacag
//
LOCUS       KCOD01002433             650 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 270770pyr ultra-conserved element
            locus uce-2068, sequence.
ACCESSION   KCOD01002433
VERSION     KCOD01002433.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 650)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 650)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="270770pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>650
                     /note="ultra-conserved element locus uce-2068"
BASE COUNT          225 a          120 c           96 g          209 t
ORIGIN      
        1 aaatccatct cagaaagggg cattgtaggt ttaaactaat taggaattaa cttccttaca
       61 attatcttaa tttgttatta aacccaagat ttcttagtat gattcagaac agcctgtgct
      121 gaggagaaac tattaattac tcgatagaca gttagctttc aagtgagctg cattttaaaa
      181 acctccttta aaatacaatt gctaaatgcc ttacagtgct gtaatgtgag acaggttcaa
      241 atcttattac ttcactgaaa ttaaaaccta agttttaata ctgttcaagt cgaacaatga
      301 ttccacactt tattgctttt gaaatccctt gatgatcata ggaaaaaatg ccctcgagaa
      361 aaagagactc tgttttcgat aaacagaaaa tacagtttgc actcttagcc tctttgtcat
      421 cacaaaaaag gatttaatgc caattcttta aaaaaagact tttttcacaa aatgtgcacc
      481 ttgtgtgcca tttgtaaaat cagctcactt tcttttattt attactgcag cgcggcaagg
      541 caataaagca gctactgata gctaataaat tacatgcctt ttaaaacaat tctccagcta
      601 caaaaacttg taactacaaa ggcttacatt tacatggtac atcgtgtgaa
//
LOCUS       KCOD01002434             824 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 270877pyr ultra-conserved element
            locus uce-2539, sequence.
ACCESSION   KCOD01002434
VERSION     KCOD01002434.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 824)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 824)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..824
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="270877pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>824
                     /note="ultra-conserved element locus uce-2539"
BASE COUNT          193 a          178 c          165 g          288 t
ORIGIN      
        1 ctttaaactg ctggctgcaa tactgcaaac acattcagac cctggcttgg ccagcagttc
       61 cccccagcta tctgcatgtt tgctctccag gatttatttt acctacacta ttggagactc
      121 tggagtcaca gcctatgtct cattgttatg catggatggg aaatattcct gtacttattt
      181 gcattcatta gctgttggga gctcctctgt tgaggtctct agccttgttt ttacagtgct
      241 tttggcagtg tttctgcact tggtgtgcga atttttatga tctgttgcat gttattcatg
      301 caatttcctg ccctgtaatg gtatcagttt tccagacaca gaggaataca aacgaaaacc
      361 caggagcctg cattagcata aaatgtccca gttctgtcag tttgattaat ttgtctcttt
      421 gtctccactc tatatgataa gtgctattaa tggttgcaac acttcatatg tcaaagtctt
      481 tcttcctaat gacttgaaaa tgtggtttat ttcccccttt tttgtattat ttttctcatt
      541 tagcattcca ctcaagtata gatttatgcc atgctctttc attatcttac tggttgcagc
      601 actggagtga ttacatatgg tgtagggtat gagcaaggat gcgatcccag gggcagcagc
      661 tgctgatgca agctgaaaat agatccagcg tatgctcagc acttttccca gaggtctttt
      721 atttattagg aacagtcttg gtacaggaca gctcggaccc tcatttagca agacgacttt
      781 ttgcctttca agaacagtgc agtgactttg ctctatttac tgac
//
LOCUS       KCOD01002435             735 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 270990pyr ultra-conserved element
            locus uce-3217, sequence.
ACCESSION   KCOD01002435
VERSION     KCOD01002435.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 735)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 735)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..735
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="270990pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>735
                     /note="ultra-conserved element locus uce-3217"
BASE COUNT          233 a          119 c          154 g          229 t
ORIGIN      
        1 tcaagtaagt gtgtcaagga aagaataatg aacaagggat gctttcagga aaatacgtgc
       61 atgaaacaaa gtccaactaa ctttttggag ttgtagtgta tcacggctaa atgaacaacc
      121 ttgacgtagc tgaactatga cagtgtacag ttccctcctt gttagcggtt ccacttgctt
      181 taaagtgctt gtgcttgatg ctaaattgtc agataaagaa aaaagataat tatcctggaa
      241 gggtagtata tggcttctca gacaagatgt attcagaata agaactggat gcttagaaaa
      301 tgtaaaccag atactgaatg taaggatatc aagttgagga gacatgatgg aggagtcagt
      361 tgcattgaaa attcagctat atcctcatca cagcaggaag gtgacttgcc ttgctgagca
      421 atttgtctta caggcttgaa tcaaactttt actgataagg ttctagtttc tgagcactca
      481 tttcatacct tatcattttt ctttctgcag aactgttaat gcaatgcttc atggcccaga
      541 ggtcagaatt gacctccttt taatatgctt ttaaatatgc tgttcataag taagttacgt
      601 tgtagctctg taaattgttc tcaagttgca tggtacaaat tgcaaatgtt gtatcagcaa
      661 tgcctgaaga caagattaaa cttttttcat ttggtgtatg aaatcctgca aagttgttga
      721 aagcaaagag gaatc
//
LOCUS       KCOD01002436             597 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 271101pyr ultra-conserved element
            locus uce-2062, sequence.
ACCESSION   KCOD01002436
VERSION     KCOD01002436.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 597)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 597)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..597
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="271101pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>597
                     /note="ultra-conserved element locus uce-2062"
BASE COUNT          162 a          117 c          102 g          216 t
ORIGIN      
        1 attacaagca cccctaaaat ccaatagtat ttttagggtt tcatttagtt gatctggaaa
       61 gcctcaatcc agggtttgac ctccttgtca tcagccttaa aagaagttcg ttcataaatg
      121 tgcttttttt tttttttagt tctttttaaa gaaatgcaga agaaaaggtg tttgtaagca
      181 gcttcccaaa ttattttttg ccatccatga gtttagagct gcctgtttga atatttccca
      241 gaaagtattg ttcttatgtg acaacaggtc agaaagactc tgcattaatt acactaacat
      301 atggttatta acagattcta gctcagggag caatacttta caatgttatc ttccacatag
      361 tcagatgtta gccatattgt cagtgctggc agctattgtt tcactcattt acttcacaga
      421 gctaattact ccctaataat aactttacct tggagttttt cacttgcttg tgccagcaaa
      481 cctgttcaca ctacatatgc taattattgg cacttattca ttatgttaag atagctttag
      541 ctgtgcagcc tggctttcgg tatggagcca gctggctgca aagttccacc ttttttt
//
LOCUS       KCOD01002437             787 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 271213pyr ultra-conserved element
            locus uce-1997, sequence.
ACCESSION   KCOD01002437
VERSION     KCOD01002437.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 787)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 787)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..787
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="271213pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>787
                     /note="ultra-conserved element locus uce-1997"
BASE COUNT          221 a          172 c          153 g          241 t
ORIGIN      
        1 ttttctctca ggagaggttg tccagagttt gaagcataca aggtctcatc ttaatgctta
       61 tatgagtact tctgcccttg gatattattc tcatcttcac aatactatgc aaatcaacag
      121 ctacttccct gtgcttccag ctaggacttc tgaatatagt gtgagtagct ggaaaatagc
      181 taaaaaagat cgtaaagttc agccctgagc atgtctgtat gtgtgtgata tggatgtgtt
      241 tgtagatgtg tgtactagtc atatactgta gtttgaaaag tggatctgtg taaatcaatg
      301 catttattta gctctctcac caactctctc cctgagttaa caccccagca cacacaatgc
      361 tagcgaaggt gattatctct gctagcataa ttcctccgta acatctgctt tcgcccataa
      421 cactccacta atttttccct catttcatta cacataattt tctttcaaca caatctacat
      481 gtattaagtg gtaatgactt tccagttaag agcaaatcga cgccaaggga cccccccctc
      541 gattgcctgc cgtgcctgac tccggctatt aaagataaat ttggtgcctc agaaagctgc
      601 agtaagctaa tcaatcaatt aagcggttag gacatacatt atcaaaattc cacagtgcgg
      661 ggatgcgtga gagcatgctg acatacttgg tatgagaggt tgaaagtcag tattcagtgt
      721 cttctgaaat gaaaactcaa gctattgcgc actaccgata gcaactttgg tgtctgtgct
      781 ggtacaa
//
LOCUS       KCOD01002438             471 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 271321pyr ultra-conserved element
            locus uce-4730, sequence.
ACCESSION   KCOD01002438
VERSION     KCOD01002438.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 471)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 471)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..471
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="271321pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>471
                     /note="ultra-conserved element locus uce-4730"
BASE COUNT          153 a           92 c          105 g          121 t
ORIGIN      
        1 gattctcgct gcccaggggc tgaaccccgg ggctccgagc cgcagggagg caaagggtta
       61 acagcttctg aatgcacacc aagcccaaag ctactgggaa agaatatcca aaaaaataac
      121 cagttttttt tccagccgct ggaccttatt gaatgtcatt gaagaaagtt ttgaatgcca
      181 gataaagaga ggcgaattaa agtgtgtgac agcagaggat aagcaaacac aaagagaact
      241 ctgtcacact ttgggcaaaa tccgtgggct ttttaccaag cctcttcgct atgattgaat
      301 taagtaatag gaaaacattt tctttcagtt tagagccatt agacaaaaac ttcaaagcga
      361 ataacacttt ttaatgtgca gctcaacaat ggaatctgtt ttgtgctgaa atgtttaaat
      421 ggtttgttgt gcaactgtgg gctgaaataa cctagactgc aaaatagcat c
//
LOCUS       KCOD01002439             520 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 271425pyr ultra-conserved element
            locus uce-554, sequence.
ACCESSION   KCOD01002439
VERSION     KCOD01002439.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 520)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 520)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..520
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="271425pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>520
                     /note="ultra-conserved element locus uce-554"
BASE COUNT          163 a          100 c          108 g          149 t
ORIGIN      
        1 agaaagaaag aaagaaagac cgaacaccgc agtgctgggg tggtgagtgt tcgggtgggg
       61 gcggggaaaa tgctgcagtt ttcgtgaaat aataaggtgg aaaaaaaggc atacaaagag
      121 taggtttttc attgtctgta aaatataaac acagatgaat tctgtctttg gtttgttcat
      181 gcttttcact ctgcacagca gggatgttct taagaagttg ccctctgcga aatttcacta
      241 aatggaaacc gtggaccctg catgatgcga ttataatcac accagccatt ctttttacat
      301 aattttttgt ttaaaatcca gtaatgcttc ttgtttttaa aacatatatc tatatctata
      361 caagcatcta aaacagcgct ggtttatgtc cccccagcaa agtgcaagct gaagctataa
      421 ctggctgtat cccatccgca aatctccatg gactcaaaaa caatatgaaa atttttagct
      481 gacaagaaca tgtctgctgc ctgcagtcac tgcaatagct
//
LOCUS       KCOD01002440             600 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 271534pyr ultra-conserved element
            locus uce-6401, sequence.
ACCESSION   KCOD01002440
VERSION     KCOD01002440.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 600)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 600)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..600
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="271534pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>600
                     /note="ultra-conserved element locus uce-6401"
BASE COUNT          167 a          107 c          121 g          205 t
ORIGIN      
        1 tcaattatgg cacctgaaaa ctgctttgct ttacagccct gtgtgtgtac atgttcttca
       61 cttatgaaaa gatgttaaca ggctgcactc ttcaatactt ttattgaatt tagctttctg
      121 aacaggtttt tgaaatcaat acagagagag ctgctaacag gaggtaaact acaaaccaca
      181 aacactttca ataggatagc tctttttata taacatttga tatcattttc acagcatgat
      241 ctctactttc atactgtgat agcttttacc tggagtttag atgattcatt tttgtagtgg
      301 atacttaact tttatatgag caaaatgcaa gagaagccag cacagcgtta aatgaactat
      361 agttgcagca ttaaatgaac tacggtacag taataatgtc gaatgctcag atccttgcca
      421 tggcacaggg ctggattcat ctattgatcc ataagtgagg agatatggag gcctacagtt
      481 ctctctcagt tttggcatat ctaattcaag tagattgggt actcagtgct tgtttggtaa
      541 tggtgtgggt ctccatgtgg ctgtgttggt ggcttgtcct catattttct ttctctgaag
//
LOCUS       KCOD01002441             585 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 271646pyr ultra-conserved element
            locus uce-5782, sequence.
ACCESSION   KCOD01002441
VERSION     KCOD01002441.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 585)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 585)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..585
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="271646pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>585
                     /note="ultra-conserved element locus uce-5782"
BASE COUNT          170 a          117 c          113 g          185 t
ORIGIN      
        1 atgtaatgca agctgatgtg gagataaaca tgctataaat gtctgagctc tctttggtgt
       61 gaaaggtggg gagaaattga atccatgtac caatttcaat ttgtactcac acattagcta
      121 tagctaattc gagaacaatt aaaaggcagc aatgagaaaa gcagatgtgc agcagtggaa
      181 tgtattgcag agaagcttca ctttgtgtta ttttctaaca cgcagtttta tttttgctgg
      241 agtctgtcac aaatcctaaa ataccattac agagttagca gatggtttcc aagtattcat
      301 acctgataaa gcctcctggg tgatcaagca ctgaaaaatc aatatatttt tcaactttca
      361 atggctagct attcagtttc attacatctc gctattcctc catggctact gtgatatgga
      421 cacttacttc accattgcat taagctctaa tctctgggcc agctgataca ggcagttaat
      481 gaatagctag agtaccacct cggtatgctt cacaattctt ctgatctcag taggatgttt
      541 cgagtactgt gatcttgtgt ttagtaacac cccagttctt ccccc
//
LOCUS       KCOD01002442             727 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 271756pyr ultra-conserved element
            locus uce-1560, sequence.
ACCESSION   KCOD01002442
VERSION     KCOD01002442.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 727)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 727)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..727
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="271756pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>727
                     /note="ultra-conserved element locus uce-1560"
BASE COUNT          211 a          176 c          131 g          209 t
ORIGIN      
        1 gtgcagattt ctacagtcct ggaatgagag accctgcaga aactgctaca gctaagcacc
       61 agatacatta aaatttttca attacgtaag gaaggaggcc atccttgctg ttagtccaaa
      121 acaaacatgc gagatttata ttagctattg ttaattttgg ataaagctgt ttatatgaag
      181 aacatagttt tctgccatta ataataataa taaaaacccc acaatgccat tttgaaattc
      241 tggacatagt ttcccccaat ttcaattgct cttgctccct gagcatttat cagctacctg
      301 attagaattt gtttccacac aaaccattga tcatcagcct attactaggc aaatgacagt
      361 taattaccca ctacattaac cactgggacc tgagacctgc ttctgctgcc atcagtcaac
      421 atgataaatg tggcaagttc agtaatgcat ggccagccct gagctgcctg ctatagtgtg
      481 aacaaccctc aatctcactt ccaggcccag gaaaatctat ggcaatctgc ataattacaa
      541 gctctgggtt aataacagac aaatgatttg ttgcatctaa acaaagtcct tggaatgggc
      601 ctggtctcct gtggctgccc gggctgctgt tgtgccaccg gtgtgcttcc cgctacaaca
      661 tgcacaaaac acatctccga cgctgtatcc ttccaatttg ttgccctcca atttatggat
      721 cctgcat
//
LOCUS       KCOD01002443             759 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 271863pyr ultra-conserved element
            locus uce-2953, sequence.
ACCESSION   KCOD01002443
VERSION     KCOD01002443.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 759)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 759)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..759
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="271863pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>759
                     /note="ultra-conserved element locus uce-2953"
BASE COUNT          225 a          186 c          157 g          191 t
ORIGIN      
        1 agtgctgttt aaaacaaagt tttttaggca cttatgtgct ctggataata caccaatgac
       61 actaaattga actcatttag ctgtaaacat gatattacat ttgacagctt ccagtggtaa
      121 aataccagac cgttcatgct gaggagaaaa gaaacaatat ggaaggagca aaactcatca
      181 aaaaaggagc cacaaaaggg ccaacaaaaa aatacccaac aaaaccccag catttttcag
      241 tggttacagt cataactcag cacaggcacg catggtacca aaagcaacct gcccagttta
      301 aacagcggag agcaggcgct ggagcttatg ttgttcccct gtttattaaa aacggatggg
      361 agcacttgac agaaaaatca aacttctggt catggctcat taatctctgt tgtatctgtc
      421 agatatgtgt gtctagagtt tcaacaaggc tctagaatca agattactgc tgagctctgt
      481 tattttctct aattttgaat gaggggaaat gctgccaatc accctaggca agaggcgagt
      541 gcagggccac ggctgcaacc ctttgcagcc ggcatctccc tgcccagtgg tttggatctg
      601 atttcagagg cagcaacccc tctttcccct cctcaccaca gccagttttg gctggctgcc
      661 tcccctccct ttcccctgaa aaccagactc attgcccacc accaaagaac atgcctgtca
      721 atgttaaggt gatgacgagg ttgatctgat gctccttca
//
LOCUS       KCOD01002444             358 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 271972pyr ultra-conserved element
            locus uce-7707, sequence.
ACCESSION   KCOD01002444
VERSION     KCOD01002444.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 358)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 358)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..358
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="271972pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>358
                     /note="ultra-conserved element locus uce-7707"
BASE COUNT          109 a           71 c           76 g          102 t
ORIGIN      
        1 ctcttcgcct ggaaaagtta agcgtgactt agtaaacgtt tgtaaatgca aataaacctc
       61 aaaccaggta gtctgggtgt agcaggacta attgcagaca atgaagctga aatgacttct
      121 ccaattagct gctgcttgga gtttatttgg aggaactgtc agctctagcg ttggataatt
      181 gctttattgc tcacaaaact atcatctatt tagaacatat gtgctaatta ctctggatgg
      241 gcgtcggaaa agagaccata aatctattag ccctttaaaa gtctagctga acgaccaaac
      301 tcccttcctt caagcttaaa ggcaagattc gtgcctggag ggtagtcttt ccagaaaa
//
LOCUS       KCOD01002445             622 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 272081pyr ultra-conserved element
            locus uce-2784, sequence.
ACCESSION   KCOD01002445
VERSION     KCOD01002445.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 622)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 622)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="272081pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>622
                     /note="ultra-conserved element locus uce-2784"
BASE COUNT          173 a          149 c          126 g          174 t
ORIGIN      
        1 ttcaactgta tcccaggaat gcataatata attgaatatg gaacagaaag gggatcagtc
       61 cccgggagat tgtttcttca aactagatgt taatggtaga gtgagtttta tctccagtcc
      121 ttttatgaat cactgagacg caaacagagt acaccttgcc tttgctgcga gctgtgcctc
      181 aagccatggg aagctgcctg ccattcacga gccagtgcct tgtaggcagc tccatcttac
      241 ctgagttcgc agatgggcca ttccccaggt gggtctggca aaacacttct cattaatcat
      301 tgcttaaagc cctctcagtg ggaagacctc aggttagaca tcatttggaa acaaattggg
      361 tgaaaaatag ctctgacaat aaggagccca cacagaattc ccctgtgaga gcttcagcgg
      421 tgtgaaaaca gactcttcca ggacactaaa tgatctgtca gttagcaaat gacattataa
      481 tccagtttta tgccacagac aaatcaaagc ctttgctgca tttcctcacc ccctttacct
      541 cctttaatat ttgagttaag agagatagcc ttgtaaatcc ttccagggac aaacctaagt
      601 ctttcttgtt tcctctcctc tt
//
LOCUS       KCOD01002446             407 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 272189pyr ultra-conserved element
            locus uce-2198, sequence.
ACCESSION   KCOD01002446
VERSION     KCOD01002446.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 407)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 407)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..407
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="272189pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>407
                     /note="ultra-conserved element locus uce-2198"
BASE COUNT          125 a           68 c           89 g          125 t
ORIGIN      
        1 atctgtagtc catcacttgg gtagactgtt aattttgtgg gaaccaccag tccaacagaa
       61 tatcatgtta aagacattct gtgggcttgt aatttgtaca caagtctggg gaagagcact
      121 gaattaagaa aacttaattt tgacagtcct gatatatagt ctattttggt taaccaaaag
      181 gaacacatac attttctaca ttagagaaat ttccattatt tttctctcag ccatgaaaat
      241 cgattttgat gtgattactc tcagaggctg cttgatgtgc gtctgacagt acggatagaa
      301 accgtgggtg gtgttgaatt gaggatactg tggttagctg aactctgtca caaactgaaa
      361 atgctgggat taaaacacat gccattaaga cattgagccg gagaatg
//
LOCUS       KCOD01002447             391 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 272297pyr ultra-conserved element
            locus uce-4654, sequence.
ACCESSION   KCOD01002447
VERSION     KCOD01002447.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 391)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 391)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..391
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="272297pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>391
                     /note="ultra-conserved element locus uce-4654"
BASE COUNT          110 a           73 c          108 g          100 t
ORIGIN      
        1 tacacatgct gactagtttc tctgttaggg ggagggaaaa aagaataaaa gtttaataaa
       61 cgtgtgctgt gttgtggatg actttgtggc gacctttgtt gcaaatggcc tatgcatgcg
      121 gaataatggt ctccgtgcag agagggaaat ggcttagtgc tatcatcgtt gcctcggtaa
      181 ccatcagagt ctccatctag cagagagaaa tgagttatga aaaggcttga gtgaagaagg
      241 gattaacaca tgatcccagg gacagcatgt caatcaaaat cagcggagaa attacactgc
      301 tctatttgag aatgtctccg gaaacgcaac ctcggtgggt gtatgtatgc cggcgtgatg
      361 gagagaccta tggctctcag cctcctctgg a
//
LOCUS       KCOD01002448             611 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 272406pyr ultra-conserved element
            locus uce-5566, sequence.
ACCESSION   KCOD01002448
VERSION     KCOD01002448.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 611)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 611)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..611
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="272406pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>611
                     /note="ultra-conserved element locus uce-5566"
BASE COUNT          190 a          106 c           99 g          216 t
ORIGIN      
        1 tttggacaga aagaatatat aaaactactt gtcattatga attttcactc cagctggctg
       61 cacatcttgc aacaggtatc atagtatttt tagaaaaatt aaaacagttc ttcctcccta
      121 cctgtagagc cagctcttag tctccatcta ctgctgaact tgtttcactg ttactcacac
      181 cattgttaaa gtgcatgcta aaaattgtag attatttctg ttcgctgcac actacattgt
      241 tttaccatgg ataatatttt atttataagg aaaataaatt gtcagagtta aaaaacacag
      301 tgcattttgt tctaggcaac acattgcttt tatcacacaa ataatttatt ggttctgttc
      361 ccagacgagt tctgtgctga cctttccagg tatactgaat attgctgcat aattcgtctt
      421 gttgggaaaa tgtatttatt ttagccatta atacatgctg tgataacctt tgtgttgagg
      481 agcaagtttg ctgttctaat tctgatactt tttacagatg catatatgga aaacaaaact
      541 ttaaagcctt ttattctgaa gaagagagaa acctaccata taagttttga taatgggttg
      601 aaaactagaa c
//
LOCUS       KCOD01002449             521 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 272516pyr ultra-conserved element
            locus uce-3280, sequence.
ACCESSION   KCOD01002449
VERSION     KCOD01002449.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 521)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 521)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..521
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="272516pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>521
                     /note="ultra-conserved element locus uce-3280"
BASE COUNT          177 a          101 c           86 g          157 t
ORIGIN      
        1 ggcatgaaat gatccctatg gtagaaattt ctatggcatt ttatgcaccg aatccctttc
       61 cctcccacct cccacaattg atgaacagaa ttcagttaaa gggaatcaaa agggtagacc
      121 ttgtggaggc ctgccgtcaa agcctagctg tgtcagttgc acaggaagac accccttttc
      181 ttcctattac aagcaatcaa cataatggaa cattatgatt aatatcaggt agtgttaaca
      241 gctttaatta aagaaaaaat atgattgcat aaaagccaaa tgtcatagtg cataaattta
      301 gcaccaaatc attcgcaagt aaattgaaga attctttacc tgttgctttc tttctgttcc
      361 tctaatcatc tcatttttca caagacagag tttttaaaaa tactgttgat aaatcaactt
      421 aaacattagt aatgtctgtc agtataaaaa gcaaagttta ccaggcaagc aaacaggcaa
      481 acactgttac ttaaaggtgc ttctttgagg aagttcttta a
//
LOCUS       KCOD01002450             973 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 272628pyr ultra-conserved element
            locus uce-1423, sequence.
ACCESSION   KCOD01002450
VERSION     KCOD01002450.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 973)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 973)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..973
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="272628pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>973
                     /note="ultra-conserved element locus uce-1423"
BASE COUNT          301 a          206 c          174 g          292 t
ORIGIN      
        1 atgtaattta atagccgaga tggatattgt ttcactttca gctatctgct ctatactccg
       61 gtctcattct acattagatg attaccttac tgtcctatat gcacaattta aagggaatta
      121 cctattactt caattatttg tttcttatca actgatgtta cactacaagg atttgcattg
      181 aaaggacaca aagaaagagc aagtcatggc acattgccaa ataaaagagt aatgttctgg
      241 tgaatttagc ccaaataatt tactgctata taaaagtgga aaagtggaag gtgaaccctt
      301 tgaccaataa atctcttctg catgtgaaac ccttatcttg tcccctccaa tatattccac
      361 actaggaagc catcatcact ggctctggtt tgttatttgt aaaccttgat cttctgcact
      421 cggtgtccta aatatggata attagcatca gtttatcacg cctctgcata ttttctcttc
      481 tctccaaaca tgcatgcttc tattggctgc cattctgtca cagaagatta tggagacaga
      541 ttgcagagaa tgaatgtgct aaacgagatt aggaaggaat agaaatagca acttggccaa
      601 taaattcctc gtgagagcct tatcatacaa ttacacgttg acttgtttca cactctccca
      661 gcctcttaat ccaacgcccc caccaagaat aaaatttcac taatttctga attactgcat
      721 atcctcatga cttgtcactg agaatggttg gaaggagcaa cacggtcgaa aatagcacat
      781 caaacttcca aaaagaaact ttacagacag aaagagatgt ggctttaaac cgccatacgt
      841 agaagcagca gcagtttgaa gggtcaggat ttcaacatta agacacctct gagcttttac
      901 tccctttaca tcagaggtta ccttgtcctt agagggactt ggggaataca gtgcgttggt
      961 gctgctaaac tat
//
LOCUS       KCOD01002451             365 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 272737pyr ultra-conserved element
            locus uce-7245, sequence.
ACCESSION   KCOD01002451
VERSION     KCOD01002451.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 365)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 365)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..365
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="272737pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>365
                     /note="ultra-conserved element locus uce-7245"
BASE COUNT          125 a           60 c           82 g           98 t
ORIGIN      
        1 caccacagga tcttgctcct ctttaatttt ctctaatttg tgtagtgaat aaccaaatac
       61 tcataatgca attagaagat aatcaggctt gtaattatgt taattgctgg agacttacat
      121 caatcctcca gcaaagtgat aggatttcag gggaactatt aacatgggaa gagagaagaa
      181 gcacacatga gagagaaaga gattggggga gtgggtaaat tgatgaacag cttaggcttg
      241 tatcattgag caacaatgag aatacaatgg tgcaacaaat gaaaagggcc tcaaggggag
      301 aagctcagaa aatgaggttt taggtaccag caactcaacc tcttttgtct gttttcttcc
      361 cataa
//
LOCUS       KCOD01002452             453 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 272842pyr ultra-conserved element
            locus uce-1178, sequence.
ACCESSION   KCOD01002452
VERSION     KCOD01002452.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 453)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 453)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..453
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="272842pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>453
                     /note="ultra-conserved element locus uce-1178"
BASE COUNT          144 a           72 c           96 g          141 t
ORIGIN      
        1 ggggaatatc atttgggctg tatgattagg gcaggtgggg tggccattaa tttaagagag
       61 aagaatcttg gcagcatggg ccaactttca ctgtattatc aatcaagcac ttcttgtgat
      121 gacccagcac tctcaggtgt tctcagcgaa ttcatgacaa aatagatgca aggaaacgtt
      181 ttgtaccctt cataatttta tagaaaattt attgttatta gaggaaccat ttgcttagtg
      241 tgattttttt cattaccagc ttgtcaacta gcatagataa tctggagaaa atatgaactc
      301 catagattgg gtgtcacttt tgttgatggt tcatatagtt taccttggag cacagctaat
      361 ggctgaagtt catagcaaca gcacagaaaa atgtggcacc tagtggaaga caaatgaacc
      421 atgtttattg ctttaatata aaaaatacat aaa
//
LOCUS       KCOD01002453             331 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 272945pyr ultra-conserved element
            locus uce-3212, sequence.
ACCESSION   KCOD01002453
VERSION     KCOD01002453.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 331)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 331)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..331
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="272945pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>331
                     /note="ultra-conserved element locus uce-3212"
BASE COUNT           96 a           62 c           41 g          132 t
ORIGIN      
        1 agtgctttgc ccacaaaagt atttattttc catgcttgtt tatctgcttt attcatttgt
       61 tatctttctt tcatagaatg tctcggcatt tttgtctaat ttctcatttt catattttta
      121 aaggtcccca ggtgcatcca atttttcaac tttaccaaag atctctccat ctctatcaaa
      181 taattataac aacatgaaca acagaaagta agcaatatac tttaaaacgt tatttaatta
      241 atcaccccag tgtgatataa acaaagttcg atgttttata cctcctagct taaggaattg
      301 ctttgcagta tttggcttgt gaattgttac t
//
LOCUS       KCOD01002454             418 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 273048pyr ultra-conserved element
            locus uce-4960, sequence.
ACCESSION   KCOD01002454
VERSION     KCOD01002454.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 418)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 418)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..418
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="273048pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>418
                     /note="ultra-conserved element locus uce-4960"
BASE COUNT          141 a           94 c           63 g          120 t
ORIGIN      
        1 aagggaggtt taggcatttc ctaccccatc cccctcttct cctctgccta aagattactc
       61 tgcatcctag acaaaggaaa tatttaaact gttaaatctg aacaaagata cagtctgcgt
      121 atgacttctc tgaagcccta taaaaattct ttaaaattgc ctattcactc aaatttactg
      181 agtgtagcaa aaatgtcaaa ggcataaagt cagagaagat tgaataaaat aatgcagaaa
      241 gacagattag tcatgcacag acccacacag cctttcacag cacacaatac cactttttat
      301 taccgctcta tctttacaaa gactatgttc aatacataga ggatgataca tggtcagtca
      361 tgtaatctgc ctttgattcc aagactcatt tatctgggcc cttttcacaa agacattg
//
LOCUS       KCOD01002455             632 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 273151pyr ultra-conserved element
            locus uce-2797, sequence.
ACCESSION   KCOD01002455
VERSION     KCOD01002455.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 632)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 632)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="273151pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>632
                     /note="ultra-conserved element locus uce-2797"
BASE COUNT          185 a          130 c          135 g          182 t
ORIGIN      
        1 aaagtcagag cctcttagct gctgctgctg ctgctgtgtg agtggaagca tctaatacca
       61 ctggcatcag agacagggct gacaaagaga caaggtgatc tgaagagagc acacatggaa
      121 tttttttttc gtttttctta ccaggaagat aaaggagatg agagtaggtt gatatttgat
      181 gaattggttt tattcagagg agtgctatca tttttatgtc ctttttgaaa atgcacccac
      241 agtgtctgaa ttcccgttaa cgcaaagttc agataaagct gatgaaaagc agctgccatc
      301 tcgatagttg ccatggcaga tggcatcagc ctttatgctt ttatcagtat tagtatcaga
      361 acacactctg tgttccaagc tgagataaaa atcattgaag ctgtacctgg aataggcaga
      421 tcaacactgc aggtcccaca cagttttgaa tcttttcaga acagtctgca taaaagctag
      481 agacaacaca ttcttgttat tcattagttc agcaatgctg atggtatttt gtaaacttca
      541 cagatgaagc agcctttcta aagagctgct gcctcccttc cttcttccct cccaccccca
      601 ggaatgctga ggctttgaaa agaaaagcta ca
//
LOCUS       KCOD01002456             612 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 273258pyr ultra-conserved element
            locus uce-6246, sequence.
ACCESSION   KCOD01002456
VERSION     KCOD01002456.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 612)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 612)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="273258pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>612
                     /note="ultra-conserved element locus uce-6246"
BASE COUNT          194 a          116 c          116 g          186 t
ORIGIN      
        1 taacgtggtt gttattttag gatgtaggac cctccatagg cacaataaaa ttctcatatg
       61 ttttaattca tttacgcatg cctgtgttta atatgctttg tgaccatgcc tgcaattaat
      121 atgattgatg agaaaagaac atgtgcaata tttttagggt acagtgacac tcccctcctg
      181 tgaatgaaag attttatgaa acagctcaag gaaaatagtt ggcagttaac atattaagtt
      241 gaactggcag aatcatgagt aaactttagc gcagttaatg atatcctctt atctgaccct
      301 gacacatttg cagcatgtaa tttacagaag ctctgtccag ggaatcttga caaatgctcc
      361 taacgatgtc agggcaatgt tccattctaa tgtaaaacag atgtgggtca gataccctca
      421 ttcatcacta acactgaaaa tttcagactc cttccgagat gaatggcatt acctgctgtt
      481 aactctcttc actgtagaga aatctctgca caagaaagaa cacaaaggga ttgttatcat
      541 gcactataat gagagataaa gttagttagc tacatggatc tatacctata ggatcctaga
      601 accctgttgc tg
//
LOCUS       KCOD01002457             728 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 273367pyr ultra-conserved element
            locus uce-1420, sequence.
ACCESSION   KCOD01002457
VERSION     KCOD01002457.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 728)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 728)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..728
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="273367pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>728
                     /note="ultra-conserved element locus uce-1420"
BASE COUNT          183 a          149 c          157 g          239 t
ORIGIN      
        1 ctgactggta ttttaaaaga acttttgcac acatttggat acagatgaga acaattaaat
       61 gccctctaat aattaatgta tatgcaatct atagcatgca ttctcttctt attagaggct
      121 gtttttttgt tgcaatctag ctaataaagg ctttcttttc cacaagagaa ttttgacagg
      181 gttgactcca gacggctttc cagctgaggt ctggggcctt gctgaacctt caaaattttc
      241 ccatttgagc tgcatcaaag tgaaggaaat tcaaggatca ctaacgtctc agatggtagc
      301 acttgcccta acaaccaagg ttcaggaatt ctttggagca ggctgaggtc atttttctcc
      361 ccttttctcc taatgctttt ctctattaat cagagctcac agctcagatt ggtcttcaac
      421 ttcctcccaa tccttgctaa gcctgtcatt tctagctatt atttacttta atggactttg
      481 gctgatccct tatgaagctt tggatctgag aataataagg ctggagagta acgggcacag
      541 acatgggtgt gggtttgcct gcagattaac cgtggcagat gggctttatt gcggtttcct
      601 gtgtgccgag tgttgattga gagggtataa tgagagaggt ggtgtctgca caatggctgc
      661 agccacttca ttgcacctcg cgtctaaaca accccatttt tctaaatctt tgggttgtga
      721 aattttag
//
LOCUS       KCOD01002458             738 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 273477pyr ultra-conserved element
            locus uce-4212, sequence.
ACCESSION   KCOD01002458
VERSION     KCOD01002458.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 738)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 738)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..738
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="273477pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>738
                     /note="ultra-conserved element locus uce-4212"
BASE COUNT          217 a          169 c          124 g          228 t
ORIGIN      
        1 agggatgcca actaaacaca caatgaaagc ttaatccttt ggtctttccc tttcttagga
       61 gtggctccag ccaccagtcc ctccatgcaa gttgctctcg caaacttgag acaatctaca
      121 ggtcagctgt agccattttt ggagcagtgg ggatgtctgg aagggcctgc caagtgagag
      181 ccatcaccac agcaaggact ccctttctca cccagctgtg gactatattg catctgacat
      241 gatgagcatc tcttgaatct acctttcaag ttttcggcaa accattttct cactgtcctt
      301 cacaaagttg acattttcgt cagcatgata ggaaagatgt catgtcggct gcttttcaag
      361 ttgttgtcac agtggttagc accagttctg tcatctttgc tttcctcaca atcccccatc
      421 ttgagccatg tcacaaataa taatacttcc aatgtttctg tcaaatttca aatactataa
      481 cccagttgca catctttgga tttactagta atgttaatct atgttgctca tcttcccaga
      541 agctgaagca ttagaaactc attaattagt gacaaatgca ggatatagat agaactggaa
      601 aaacactacc caaagccttc cacttaaatt attagttcga taattttgaa acctaattaa
      661 atattcaagt caaatatact ttgaaaatat aatccttctg agggaacata tttattttcc
      721 tttttgcaag aacacaaa
//
LOCUS       KCOD01002459             617 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 273581pyr ultra-conserved element
            locus uce-5675, sequence.
ACCESSION   KCOD01002459
VERSION     KCOD01002459.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 617)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 617)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="273581pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>617
                     /note="ultra-conserved element locus uce-5675"
BASE COUNT          188 a          123 c          127 g          179 t
ORIGIN      
        1 ttccttcaat agggttttca taacctcata gcacaattgc tgcccagttt ctatgggaaa
       61 cactaagtga aagaaaatca ccatttcaag gggccatcac agccatactg gagctctgta
      121 ggtacattta ggtactgttt taattcagag tcggctaaca aacttgccat tttataaggt
      181 ttaatctgaa tacctgcccc atttctgtgc tgggagatat ttatattatc tcttcagcac
      241 aggctgactg ttccctgcag ctctgctgac tcaaaataat gacttgtagg ggagctctaa
      301 tgacagaaca aggggcaatt acagacacag catgagcctc ggaataactg cgtgatgcat
      361 tttgtgcagt tgattgaccc tgtgttcaag ttcatttgtg ctctgctgct gtagatctgg
      421 cctatgcctg aaggtatatg gcttgttaat ctcaatataa gaagacagag cagatcagat
      481 caaatcagat tgttcagaca aaagcaaaac tgctctgctg ggacaataaa cgatagcaaa
      541 aatatgtgac tctggaagca aatattccta cagacagaaa gatctgaaaa acagattatt
      601 tttttaaagt tggtctc
//
LOCUS       KCOD01002460             308 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 273690pyr ultra-conserved element
            locus uce-1434, sequence.
ACCESSION   KCOD01002460
VERSION     KCOD01002460.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 308)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 308)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..308
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="273690pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>308
                     /note="ultra-conserved element locus uce-1434"
BASE COUNT          100 a           51 c           66 g           91 t
ORIGIN      
        1 ttttaaaatg catgaaaaga acattattta tccccgtgtg ctgtcttaat tttcatctta
       61 aatttacaga catgctacat ggcaacagta ttaaagcaaa aaagggggga tacattttcc
      121 tattcaataa aaagccatgg aagttgcatg gggtagagtc tctaggaaat ccactctttc
      181 tttgaaaaaa tgtcagtggt gagataggag attggcacca caatgagcaa aatatagtga
      241 gggctgatac ggactgtcag ctagaatttg ggttaagaca ctgacttttg tctgcatgat
      301 gcctacct
//
LOCUS       KCOD01002461             643 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 273796pyr ultra-conserved element
            locus uce-5777, sequence.
ACCESSION   KCOD01002461
VERSION     KCOD01002461.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 643)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 643)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="273796pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>643
                     /note="ultra-conserved element locus uce-5777"
BASE COUNT          211 a          129 c          128 g          175 t
ORIGIN      
        1 gaagcttcac acaagcagtt ggaaacaagt gtagagtaca aatttaatcc ccctaatccc
       61 ttgtcaatta caaggaatat cctagagtaa agttgtatca acagtgcagt ttccaaaccc
      121 atagaaaaat aaatgaagcc atcctttgcc tctttccact tggacctgtt cgctgtagct
      181 cccttaaagg attaggaaca ctgtctgcaa taaacatgga catcaatttt taaaatctgc
      241 tctgaaaatg gcaacatttc acaagctgtg aaaatgcttt ggtttagggc acggcctgag
      301 aggcagtagg ccagcaggat agcagtggga ttagccctaa ttacctcatg tttcacctta
      361 attaactact gatacagaag gtaaactctg caggatctgt ggcgagacct taggccagta
      421 ggcaagatat ctaagccgtc attgtttaca catgataatc tctcttttga atttgcttta
      481 attgctcaaa aagattagct gaaggatatg cattatgtat tgattagcaa tgctaactag
      541 atactatatc tccacaaatg cagtctagct tttagaggca caaggcgatt gtcaaaggat
      601 caacatcaat cacgaagcgg taacatgaat ggagggacaa aaa
//
LOCUS       KCOD01002462             686 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 273908pyr ultra-conserved element
            locus uce-3584, sequence.
ACCESSION   KCOD01002462
VERSION     KCOD01002462.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 686)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="273908pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>686
                     /note="ultra-conserved element locus uce-3584"
BASE COUNT          173 a          158 c          125 g          230 t
ORIGIN      
        1 agctgtggca taatttttat attatcctga ttattagaaa taatggacag gcagtagagg
       61 tttttggttt tttggacagg ttataaatct cttctttatg ctgtcaagag taagggagaa
      121 acatatttca atagcaacaa attactacca ttatgctaag tgctagatat cccactgtgc
      181 agttttgctt tgtgaatttt taccttcttc catgcacact tttagccact gatcgcacag
      241 cctttcagtg ttttctgcct tttcctttaa ataaactggc tctggctcct tccatctggt
      301 tccccttccg tcagcaaccc tgcacctgtt cacacctcct ctcctgttgg attccactga
      361 acatttcctc ctctgccagg gctattctgg cactcgcaac ctttctgtca ttcaatccat
      421 ctgtcagaag tgaactttgt ttaccgcaag cttctgcttt cttcttcaag aagcaaagcc
      481 cctcaaggtc attgtcaaat gaactgtcgg tgtagattta aatccacttc tgctaaccag
      541 cagcagatgt ttacagtcct gtatttgtga agatcagttt ggggtgtagg agaaataata
      601 agaagcaaaa gatcattatt tgttaactcc agcagctaac gtgttccttc ttgctagggc
      661 tagcacaatc tgagaaagac tttgca
//
LOCUS       KCOD01002463             690 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 274018pyr ultra-conserved element
            locus uce-2262, sequence.
ACCESSION   KCOD01002463
VERSION     KCOD01002463.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 690)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 690)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..690
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="274018pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>690
                     /note="ultra-conserved element locus uce-2262"
BASE COUNT          144 a          171 c          158 g          217 t
ORIGIN      
        1 tatcagtagc tttgtaaaaa aactgcttag ggaggatggg gttgctgtga gtttaatgcc
       61 tccattctcc tgtcccttgc tatatttttg gcaagtactt ttcgttgttc atcttgtgac
      121 cctccagggt tctgcatcct taaaagccat cttggaggtt tgggatgtta atctttgctc
      181 tgtaaacctg gttttcagta cgtatgtgct ggtctcttga cctgtcataa tcactaagaa
      241 caaagcctgc acaaacaagt aacatccagg tgatgtgctg agtgatgtca ttaagtgccc
      301 gtgtcactgt tgtcctgctg cagataccga gtggcaatct gggtatgttt ggcaatagcg
      361 gagcagcaca agccaggacc atgcaacagc cgcagcaacc gccagtgcaa cctcttaatt
      421 catcccagcc tagtcttcgt gctcaagtgc ctcagtttct atcccctcag gtcagatttt
      481 ccctatccct ggaactcttc ccgcagccac tgctgcctgg ctgtgtccgt gtttctttcc
      541 taggcagatg tggcgtggct gagtgttctc acatattacc tctgagagca cgttcccctg
      601 aggagtttgt tctcatcgag cactcgagtt attaagatta gggcctcttg ttaatttttg
      661 gacagttact tctggtcatc ttccagctga
//
LOCUS       KCOD01002464             564 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 274125pyr ultra-conserved element
            locus uce-1662, sequence.
ACCESSION   KCOD01002464
VERSION     KCOD01002464.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 564)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 564)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..564
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="274125pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>564
                     /note="ultra-conserved element locus uce-1662"
BASE COUNT          173 a          124 c           96 g          171 t
ORIGIN      
        1 tcactttcta ccaagtgtat aatttatcat ctggttttgg tttttccctt catgaactct
       61 tgtggtattc caaatgtata atcttgttgt atttatttcc cagtggtcca acaaaatgca
      121 cagcaagtgc tgactagaac aaactaaaag gcagtgctat tgacaagccg tcacttgagc
      181 agtaatgaac actctgcctt tactttcacc tcaccaaact aacagcttta atttatgata
      241 aagcaaacga gagacaacct ccagttttat tataccctca gtgctgtttc aaatcaagta
      301 attagaaggt caagaggcag gtctagaaag ccaaacacaa atgcaagccc tctgcactga
      361 cattttaaaa aaatcttgac tgttcaaaga gcattttatc catccctctt ctgcagagca
      421 gtgtgagtca gtttttacca ccgtaaccaa tctgaaacag tgtagttcaa ttctttgctg
      481 agtaattcag cccatatgtt cagagagata cctagcagac aatgtccctt ctccaggctt
      541 ctgaaaggta caggtgagat ttat
//
LOCUS       KCOD01002465             472 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 274233pyr ultra-conserved element
            locus uce-613, sequence.
ACCESSION   KCOD01002465
VERSION     KCOD01002465.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 472)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 472)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..472
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="274233pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>472
                     /note="ultra-conserved element locus uce-613"
BASE COUNT          192 a           57 c           67 g          156 t
ORIGIN      
        1 tttccttttc taatattcta ttggctaggg tcctctaagg tttactgttc tataaattac
       61 tgtaacaatt ctatctaatt taccatgcat tttctaaata gttaaatgtc ttctgcctag
      121 tgatacaaaa tatatgaaat attaaaaaaa tcgaaaaaga ggaaaaaata ggaattaaaa
      181 ggcatacatg gcctgttaac agatttcttt atttttcttg gtcaattctc taccatcatt
      241 ttggagtttg ggtagctgta aattttgaaa aattgacatt ttcagaaatt taagaaagga
      301 gaataaaact aacaacaatg ctaagcacac cagtacgaaa acaacaaatt tacacagaaa
      361 ttttagtgag taagttaaaa tgattggaaa tatagaactg cactgaaata gaatgttaaa
      421 atgtaaatac taaaatatgt atatataaat aatgtataat aagaataaat ag
//
LOCUS       KCOD01002466             554 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 274448pyr ultra-conserved element
            locus uce-3291, sequence.
ACCESSION   KCOD01002466
VERSION     KCOD01002466.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 554)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 554)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..554
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="274448pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>554
                     /note="ultra-conserved element locus uce-3291"
BASE COUNT          159 a          105 c          115 g          175 t
ORIGIN      
        1 ttttgctaag tctgtcttca ttacttcaac attgtgcatt tgctaatttg gaagcccctt
       61 cctattgaca gctctgctcc atacacctgc aagcaatttg ctgagctcca atataggaga
      121 attgcagaga tggcagctcg cacctatttt acttcgcttt tctcaatgca cagcaaattt
      181 ggctttcagt gcgttatctc ttttgttaat gcaaaaagat tccctgggcg aaaaaattgc
      241 tcataattac cagagagatg gggaaactgc attagaataa ataaacctga aattactgta
      301 attatgttgt gtttgatggg ctcggcttgt aatcaagaag agaatacagt gaaatgatgc
      361 tgaccctctt gggtttgcag ctgtacgcgc actttggggt cagaaaagag tcattttgat
      421 catcattaag ctgtgtgtaa cctatttcag aagtgtttga aaatgaggcc ccaacaaggt
      481 cccaaaatta cattttgcca tttacaggct catccataag gttgtagggt gacaattggt
      541 aaaggtataa tatt
//
LOCUS       KCOD01002467             516 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 274558pyr ultra-conserved element
            locus uce-7627, sequence.
ACCESSION   KCOD01002467
VERSION     KCOD01002467.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 516)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 516)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="274558pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>516
                     /note="ultra-conserved element locus uce-7627"
BASE COUNT          174 a           75 c          124 g          143 t
ORIGIN      
        1 ggtagtttta atacacggga tccattcttg acagaaatga tgaaacagat ttatcacctc
       61 tcctggctgc ttacaacagg aatattaaca gtgatcctca aggctcaaat cgcagcactt
      121 ggaatgtgag ttaagagtaa ttctgtgagt gactgaaacc tgtagccctt taaatcaaac
      181 taagtagtgt tttattaaag tgcccagcaa atcaatctaa atccaaggat aataaagccc
      241 taatcaggtg gtagaaaaaa taataggttg tcatgcatga ggaaaaatag gcaatcatgg
      301 aatgttttct ttaattaggt tgtgtaaagt ggaaggactg agtaggaact ggcaagacat
      361 tcatcatgag caaggtggga aattattgag attactgagg aaggagaatt gagtgtgaaa
      421 tactaagatt tgactggaca gaaaattaaa actggtttgc tgttcgtgtc acttgctttg
      481 gcaggtaggg tttatccaag gagtgggaat ccagag
//
LOCUS       KCOD01002468             712 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 274669pyr ultra-conserved element
            locus uce-4641, sequence.
ACCESSION   KCOD01002468
VERSION     KCOD01002468.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 712)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 712)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..712
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="274669pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>712
                     /note="ultra-conserved element locus uce-4641"
BASE COUNT          212 a          156 c          139 g          205 t
ORIGIN      
        1 agaattcaca tctcagctgc atgtgctgcc catgggctca gtatcctgct caaacacttt
       61 ccacagggga gggggaaagc ctgtttaatt aggcattgtg taggaaggat gaactctatc
      121 ccaagtgagg gaggattgca tgtctcctcc agatggtgaa aaggcaggat aaaatggggc
      181 ctacctgtat tggttttaat cagcaacttt aagcaaactc agtgttctca tcagaaaagg
      241 ggaaaaataa acagctgagc actgtgattc atttacactt caaatatact ttgagttggt
      301 tattcctcaa ttaatcaaat agctggtgta tccctaaagt agtataaagt gacacgctgt
      361 gtgaaatcaa ttttcccttc caaaatcatt aaattcagta gcctgtgact acatccctgc
      421 taattctagt accggtcctt tcatcctcca ttaactttgg cacgcctaac aggctgtcaa
      481 aaataatttc ccagaacgta aataattcag aaattaaaaa ttaataaata ataacagaga
      541 gctactggga gatagactgg gtcaattagt cagctctgca ttctgtttct tcgcagcagg
      601 ggggcagcca cattcgttac tagaatcttt cctccgattc ctaggtctga tttacggctc
      661 ttcattactg gatccagtca gacacaatta cctccatcac tatctcagtt cc
//
LOCUS       KCOD01002469             688 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 274778pyr ultra-conserved element
            locus uce-2639, sequence.
ACCESSION   KCOD01002469
VERSION     KCOD01002469.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 688)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="274778pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>688
                     /note="ultra-conserved element locus uce-2639"
BASE COUNT          226 a          123 c          121 g          218 t
ORIGIN      
        1 tatctcaaac aaggtaagtg caaacataca gatttattca gatttgcaag catgcaacct
       61 gttacttaac tacatcaata ccttctctcc tagaccaaac tagtatctat atgtttgctt
      121 tcacgaacct agaatctttc ttcaggactc ctaaaacaag cagtgtcttt gaattctgaa
      181 atgacacaaa tatcaagaaa gtccacattg tgcaagaaag cagcagctat gtttctcaac
      241 ttggactaaa aatgaaaaga gaaaacaaaa accgttcact gaacagcaga ttagcagtaa
      301 tgttcctcat gaatcgataa gagtgcctga tgctgaatat ctaacagcaa atgctgaatt
      361 tgggtttaat attttaaagg tttattggag tttaagcttc ttgctgtgct ggtctcttca
      421 aatccctgat ctgtttaact aaataggtct tctcatcatt aaattgttca tcctcggtcc
      481 tgtcattctg aaacttgctg aggaactcaa taagtttggt ctggttcttt agaaggatgt
      541 ctaatatagg ctgtgtcttg ttaggattgg ctacaaacac ctgcaagggc attgagcaca
      601 aacagaaggt taagtttgat gatggtaact taaaattatg ttttaattat tcaagtgttt
      661 ttaaatacaa gacataagct gaacataa
//
LOCUS       KCOD01002470             468 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 274889pyr ultra-conserved element
            locus uce-83, sequence.
ACCESSION   KCOD01002470
VERSION     KCOD01002470.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 468)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 468)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..468
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="274889pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>468
                     /note="ultra-conserved element locus uce-83"
BASE COUNT          148 a           72 c           98 g          150 t
ORIGIN      
        1 atgactggaa gcatcaggtt tttgccagag aatgcctcag gtaagaggag aatggctaga
       61 ggctataagg aatcacaaga gacaagtcag agtcgtaaat tgggaaactg acatatctca
      121 tctaatatac ttgctaacta ggcctttaaa aaccttgaca tttaactaag tttgtggaaa
      181 agttatatat tttgtccttt tctattggct ataactcatt aatatgatga actgaggtgt
      241 ttataatcat tatcagcatt agcagattag cgatcattta gagatccagt taagcaccta
      301 acaactgctc aattgtttgt gtagattgtg cctttttcaa aggtcaaaaa tgatattgca
      361 agttatttac ccttttggta cttcagtgtg tgaaatggga tgaaagaatg ctggtattca
      421 gctgaggcat ttaaataatg ctttggaagt cctggcctgc ttagaaca
//
LOCUS       KCOD01002471             354 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 274997pyr ultra-conserved element
            locus uce-230, sequence.
ACCESSION   KCOD01002471
VERSION     KCOD01002471.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 354)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 354)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..354
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="274997pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>354
                     /note="ultra-conserved element locus uce-230"
BASE COUNT          149 a           34 c           58 g          113 t
ORIGIN      
        1 aaattaataa tagattaata catgaaaatc tatgaagtca cataagataa tgatttaaaa
       61 aggaataatt taaaaagatg aattaaaaag tagaatcaga aaagaaggcc aacataaact
      121 agggaaaaac atgctgtgaa taaagtctgt tagatcttga aataggagaa ctgctaaata
      181 atgcatagtt ttatttttct ataatttgca taaaccttaa gagagtattt atttgtgtaa
      241 aacttgatgt atcgaggaag gagaattaaa aaaatggcat tcattttgtt ttcattttgg
      301 tatttaggaa aaatattctg ttacatatgg actacttaga cctaatcatc tgac
//
LOCUS       KCOD01002472             808 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 275106pyr ultra-conserved element
            locus uce-5539, sequence.
ACCESSION   KCOD01002472
VERSION     KCOD01002472.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 808)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 808)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..808
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="275106pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>808
                     /note="ultra-conserved element locus uce-5539"
BASE COUNT          246 a          140 c          164 g          258 t
ORIGIN      
        1 gaccacacag agcaagagag ttttttaata ggctgtttgg ggaagagtgg tgtgtagact
       61 ctgagatctt tactgtgagc cttatttgct tctggttgcc ccttccatgc cattcccttt
      121 aatttgatgg gaagccagca gtactgcagt tttatgcaaa gcctccagtg aactcaaaaa
      181 agattattat ttctcacttt gtctttacag ataactttta tgcatcagaa cgcaggatta
      241 tctgaagaca caaatgcaac acaacactga caaaatcaga tgaaaaatct cactctttca
      301 gctaaaatta gatttatcat cagaaaagca ttctcttttc attttctgaa aggtgctttt
      361 tgacagaccc tttgcagtgg acgtcatgct cacaaaacat gctgtcacag ggctatttga
      421 atatggtgac aggctcatta tcatgttgaa gacaactgac aacactgcag actagaaatg
      481 gacaggcttg ccaatcagct gttgaaagga ttgcagttga aatagagttt tttttgttct
      541 gagaacagta gtacaaattg actacattaa ttctttttat tatggttgca tacactgtag
      601 ttaagggtcc gtcactgttt ccattataaa tccctgtttt caagggttta ttagtagacc
      661 ataaaaaatg gttcctgttg aaattttgca tatatattac cctaacggaa caaaatttct
      721 gtggtaactg tgtggaggag ggagggcaga gaaagaggga ttgactgatt ttagctgaaa
      781 attgcataaa gctgaatgta ttattatt
//
LOCUS       KCOD01002473             630 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 275220pyr ultra-conserved element
            locus uce-6519, sequence.
ACCESSION   KCOD01002473
VERSION     KCOD01002473.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 630)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 630)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..630
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="275220pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>630
                     /note="ultra-conserved element locus uce-6519"
BASE COUNT          202 a          126 c          110 g          192 t
ORIGIN      
        1 aagagctttt atttctgtcc catcatctca aattatcttg tttaccccct gagttctgag
       61 caggtaccat tactgcactc agttgtccac atcatctttt gaagggaaaa ttaattctga
      121 attactggcc ctataactgc ctacttcttc acatcatctg tcagcaaaat aagcagacaa
      181 aagctggcta agtggatttc tgttagctgt catttaaaag gaaaaggaca ggtgttgaac
      241 gaagcttcct tctccaactg ctagttaaca atacatatag aagaagttta attgcttgca
      301 tccacctgca cccttgtcat ttcccagctt tattgatttt aatgaaaata ttaagtgcac
      361 ttcaggagca acagctaaag tgacatgttg attgaaatat acaggaaaat gtataatgga
      421 agcaggctat tacagtttta atagaatctg aaagtagtag catctagagc agcagctatt
      481 cttctgcata cagcaagttc tgaaatgagt aattggaagc tgaataaatg tttggtcctt
      541 gttaaagcaa tctttcaccc taataaaaag tgacccaggc catattttat tccattaggt
      601 acccttcagg gtgccacata aacacaacaa
//
LOCUS       KCOD01002474             579 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 275329pyr ultra-conserved element
            locus uce-912, sequence.
ACCESSION   KCOD01002474
VERSION     KCOD01002474.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 579)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 579)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..579
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="275329pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>579
                     /note="ultra-conserved element locus uce-912"
BASE COUNT          157 a          121 c          106 g          195 t
ORIGIN      
        1 tttgaagttt tcccacctcc cccacccctt agtttctcaa atatgttttg gccttttttt
       61 ttaatctttt ctctctgttt gtaataagat taattatgtg tggtgcacca ctgcttatcc
      121 ccatgaaaga aaatctaaaa cgagggattt cagcttcaag aaggctattt tgtcctgttt
      181 ccgatgttct aaagggatta atttaccata tcgtatagcc ctggaagact gtgataattg
      241 aaaacatcca tattcattgc atgttcaaag ggatctgtct gactttgtaa tgtaaaaagt
      301 gcatttttaa cctgaacggg gacctgcatc tggtattgct taatcctatt agtccgacag
      361 ttccaaagct ttagtgtata atcattagct cgtgttaatc ctcagacatg cctccagctt
      421 cagcctgtca gaaggagtcc ctgtagggaa aatatggagg tgctgatagc acaacaccaa
      481 ctaatcttat cttaaatgct agcagcagcc actatctgtg atagccaggg aattaaaaac
      541 aaatttttta tgggtattgg gtatcgcctt cccttctct
//
LOCUS       KCOD01002475             630 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 275439pyr ultra-conserved element
            locus uce-7044, sequence.
ACCESSION   KCOD01002475
VERSION     KCOD01002475.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 630)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 630)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..630
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="275439pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>630
                     /note="ultra-conserved element locus uce-7044"
BASE COUNT          205 a          108 c           98 g          219 t
ORIGIN      
        1 attaaaggca attattaaac tttaagttcc agcaaatgtt taaaatacaa tgtgttgtag
       61 gagctcatat aaactgcacc tgtaagtgac atctttgcaa tactcttgta cataggaggc
      121 tcaaagctat ttcttgccag cagcagtgat ccacagactt tagatgttgt taaaaagctt
      181 acaatatcag cagggcaact gctgcctcca ttagaaacat gatactaaga tgctgattaa
      241 taccaggagg gggctttaat cagccaaagc catatgctat ttcacttaag atgaaagtgc
      301 aaatgataat cattatttca gaaaggatgt atttaaaaga agagcagaac agcaagtggc
      361 atctttttat cattagagct tcttcatgca gccccttttt ttctaaagct ttataagctt
      421 ttatgaacat ctggatcatt tcttcattat ataggcttcc aataccatta tgtttgatgt
      481 agtgttttta gtggagctat gctaaatgtc taaatataca attaattcct attaattata
      541 gttttcaaac tggtgaaatt atccatcatt aacttaatca cttgtatttt atcttaaaat
      601 tgtattcact cttttataat ccctacatct
//
LOCUS       KCOD01002476             709 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 275545pyr ultra-conserved element
            locus uce-1395, sequence.
ACCESSION   KCOD01002476
VERSION     KCOD01002476.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 709)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 709)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="275545pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>709
                     /note="ultra-conserved element locus uce-1395"
BASE COUNT          213 a          133 c          178 g          185 t
ORIGIN      
        1 tccagcctta tggaacaagg tgctagcatt aaagacgaca agaagtgtgg gcaggattgt
       61 ttccttctat ttactgtccc ttccatcaca tttcagctgg ccccaaacca gtgactgaca
      121 gatgacagtc aaccagcatc agacagtttt tcttcaggtg gttgttgcgg gggagttctg
      181 agctcctcac tgacacacag ctggttggca atgtggaggg aggaaagagg taatggaggg
      241 aaaagaaatc ttaccttggc ttcaccagtg gcaacatgag catatgcaat tataagatag
      301 ctggcagatg acagagttag ttaatgtaac aagccctgta aagcatttag ccacattcta
      361 gtgtttaatc agctgtgtaa agtgcaatat ctatctttca attttatgcc attaagggag
      421 acaagatttt gattaggtac ttaatctggg caagaggaaa acaggcccag agcaagccca
      481 caataggcag caaaagggac attcgacgaa ggattcgata aaggagaaag acagaaattt
      541 aacataaaag agaattagtg cagctccttt caatttagtg cacagatttt tatggactaa
      601 tcaattagag gctgtggctg tgctgctggg aagtggtgcc gtgttagagg ctttgccata
      661 ttaattctgt tcattacccc gaggtcagac ggagtgcttt ggagaagcc
//
LOCUS       KCOD01002477             595 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 275654pyr ultra-conserved element
            locus uce-5667, sequence.
ACCESSION   KCOD01002477
VERSION     KCOD01002477.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 595)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 595)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..595
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="275654pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>595
                     /note="ultra-conserved element locus uce-5667"
BASE COUNT          198 a          120 c          143 g          134 t
ORIGIN      
        1 ttgtgctttc aaagtctcag ccagcaacaa tgctagaaca gagataaaat tgatatcgca
       61 tgataaatac aaagtgtatt tcttaagagt ggcactcttt aattgccgtg atactacata
      121 ggaagaaatc ctctataaaa actccagagc agcctttgca gagcctccat ccaagaaata
      181 atgcagcaca aggctcagca agatcaccat tgcccatgtg cctggcagag ctgactaaaa
      241 gaccagtagc agctggcagg aaatgggtaa gaaagctgac cacagataaa ctgtaggatg
      301 ctgaagagta gcagaagata tactctgaga gaggaagcca agctgtcagg tcacactgta
      361 gtctagtgca tacagtacat acagtctgct attgaagtat gcggccacca gataatggtc
      421 aggggacaca gctgtcaggc aacgatgaag taactccaag gagcctgaag cagagtgtgg
      481 tacagctgcg gatgtttctg ttgagcagga taaagcctgc ctgtctcaag ggtaccatag
      541 caaatgcagt gtcatgtgag tggtactaaa taattagatt caatttaaat cagca
//
LOCUS       KCOD01002478             655 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 275759pyr ultra-conserved element
            locus uce-6105, sequence.
ACCESSION   KCOD01002478
VERSION     KCOD01002478.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 655)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 655)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..655
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="275759pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>655
                     /note="ultra-conserved element locus uce-6105"
BASE COUNT          205 a          125 c          165 g          160 t
ORIGIN      
        1 gggatggtgg ggacttagaa ttgctcagta ggaaggactg acagcgtgtc tctggtagat
       61 tatcccagat agccagacct tgttatatgg ttttcatcac aaacataaaa gtacttggta
      121 taaaacagaa ggtcaggaag gtttaaggca tggtatatga gaaaacattt tccagatttc
      181 agcttcctcc aaggtaatat gcaagtgtaa ttaaaacaga acctggaaat atagagtaca
      241 gtaccctatt gaaagtgtgt tgtatgagct gaactccctt cattgatagt tttccaaaac
      301 acacagctgc aataatcttt atccaggaga agggaataaa ttaagtctga acacctctgc
      361 atatagtaca gtacagtgta tagccctgca ccccatataa cctcggagag gtaatggaaa
      421 gctgaaggag gcgcaagtgg aaaacctctc tgaccagcaa acactttctt cttctgaaag
      481 cagacagatg ggaagaaaag ctcatgaaac agaggcagct taagtactgg gatgtctcgt
      541 ttctgctcaa gtcgttgaga ctgtgcagtg gcagggtgcc aaagcacact ccaggtttga
      601 caggtgggga ggggaacgtc ctgggcttgc ccagcaaaca gggagtattg atggc
//
LOCUS       KCOD01002479             607 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 275870pyr ultra-conserved element
            locus uce-6945, sequence.
ACCESSION   KCOD01002479
VERSION     KCOD01002479.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 607)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 607)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..607
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="275870pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>607
                     /note="ultra-conserved element locus uce-6945"
BASE COUNT          193 a          105 c          134 g          175 t
ORIGIN      
        1 ccagcagttt ccatttcatt ttttgaatta ttaaaagatc aaatgttgga attctggatc
       61 gcccgaattc atttgtcaga tcacgaagta ctcataacat ttctcagcct taataacaca
      121 tctgctctta aaatgtggtc tcttgataat agctggctga aagtgtctga atttagggat
      181 tatttgagac aacagatttc cttctatttg gaattgaatg aggcatctgc tccctcaccg
      241 tcagctttgt gggatattct caaggcaatc ataaaagggc agatcatttt gtacattatg
      301 agaaggaaaa aagacctctg ttggcaatta cgagacttgg aagggtgaat tagggacccg
      361 caaaggtacc acttcatgtc taaaaattct agctactcaa tccattcggg acacagattt
      421 atctgatgag tggagaggga gggggcaatt ctcctgtcaa aggcaaagaa agaaaattaa
      481 tcaggaaagg atatatattg gataactgac ccaacaacgt attagggaga ttaggactca
      541 ggatggagag caaggcatgg atcccttgga ggattaaagg aaattttgcc aatatttatg
      601 ccagttt
//
LOCUS       KCOD01002480             820 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 275981pyr ultra-conserved element
            locus uce-1530, sequence.
ACCESSION   KCOD01002480
VERSION     KCOD01002480.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 820)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 820)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..820
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="275981pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>820
                     /note="ultra-conserved element locus uce-1530"
BASE COUNT          223 a          171 c          156 g          270 t
ORIGIN      
        1 gcttttattt gtattttcca aacctatatg ccatagcatg cattgtggct attggtatgc
       61 acggacacat tctaatattg tcccccacaa caaaagccat cattctggca aaaggagaca
      121 ggaaaatcta acactctcct accatgacca agatggtaag agctgctgca gttgccaaat
      181 acaatacaca aaacatttaa tttataatag ttagaacttg gcccttgacc aagtccaaag
      241 aactatgtct tatttcactt gctcttgaat atgtctcttt cagagataaa tgactgtgct
      301 gtttgccagt tctctcctct gtttggcgtt ttgtttagct ctgcttgtga caagccaaga
      361 gttgatgcat ctgcttgaat gtgtaatata catctttggt caacttagct tttttccttg
      421 acaatattat gtcaaacaat cacatcacaa ctggctctga tctctttgtt gttagctaat
      481 aaattaaaga gtatttatta tctgcaatcc ttttttccct tttaatggtg acacatttgt
      541 ggtgaattac agggcagctt tataaactag gctgtgggcc agtatcagcc cctgcgttca
      601 tgtgaatgtt ccctctccca cttggcctcc cagcctggtg gtaaatcaag gcagctgtca
      661 cagcacacta agttagtgtg cgtcattggg gagagcagga agcgttgggg gtataattct
      721 gtccatcaaa ctaatatgtt atatcagtag ctttgtaatc ttctgctata agttatggga
      781 agtgacacct aagaattcac tttgaaagca atgtgttcct
//
LOCUS       KCOD01002481             435 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 276090pyr ultra-conserved element
            locus uce-3601, sequence.
ACCESSION   KCOD01002481
VERSION     KCOD01002481.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 435)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 435)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..435
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="276090pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>435
                     /note="ultra-conserved element locus uce-3601"
BASE COUNT          169 a           70 c           86 g          110 t
ORIGIN      
        1 tgttacatcc aagcatcagc aaaacattgg agttatttat gagcaatgaa atcagccaaa
       61 tgtaacatgc agactgtgca tggtttgaac acaaacctgc catcgtaaaa ttgtaagctc
      121 ctgaagcact gaactgcacg atggttgatt atcaattgtt aaagaaaatg aaaacaaatc
      181 agatggattc tatttagcaa tagaaagtaa agtccagtag gactaccttc ctacgtatgg
      241 agatcatttc ttgtagttta gcttccataa catattgata atcatcagat gaggtagaag
      301 aggttggatc agactaacaa gtcaaggaaa aggagaggga caaaattgaa aaatcagaac
      361 taaagacact gacactgaac agaacacagc acagaatgct taaaagaaaa gtgtgactga
      421 aagtttaatt ctttt
//
LOCUS       KCOD01002482             689 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 276199pyr ultra-conserved element
            locus uce-4789, sequence.
ACCESSION   KCOD01002482
VERSION     KCOD01002482.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 689)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 689)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..689
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="276199pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>689
                     /note="ultra-conserved element locus uce-4789"
BASE COUNT          168 a          178 c          116 g          227 t
ORIGIN      
        1 cttttgtcac atctcatgcc tttcatttgg cttaattgtt tcattgtaga tgacgagcat
       61 ctctctgtag gatgctgaga gggtaaaaca gcatttcttt gcctctggcc tcattcccag
      121 tctcacatct aaggaatagc tgctggccct gccccaatcc catcctggtg tttggatcat
      181 gctgctgtca gccaggtcct ttggcacagg attactgaat atgtttccac cttcttctgg
      241 caggattcct ttcaatgaag atcccaatcc caatactcat tcatcaggac cctccacccc
      301 tctgaaaaac caaacctatt ccttttcacc ttccaagtcc tacagtcgac agtcctcttc
      361 ttctgacaca gatttgagtt tgacacccaa aactggtaag gcgcttccac ccactttaag
      421 ttgtgttttt atattttcat tcaacccttt taagttatca aaatgatggg agacctcact
      481 ttctgtaggg tcaaaatttc aatcctgtct atttccactg tcctggataa cctgaaaatg
      541 gtgccacagc ttcgagtcaa aacagagcat taagggagtc ctaagtaatt gcctttttct
      601 tatttcctcc atttcatatc ataggaatgt atttcttacc acagtatggt tactaaaact
      661 atgtagcctt caagcctact gtgttgtgc
//
LOCUS       KCOD01002483             723 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 276309pyr ultra-conserved element
            locus uce-7673, sequence.
ACCESSION   KCOD01002483
VERSION     KCOD01002483.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 723)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 723)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..723
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="276309pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>723
                     /note="ultra-conserved element locus uce-7673"
BASE COUNT          181 a          171 c          152 g          219 t
ORIGIN      
        1 ggcaccattc ttgtgccttc tggtctagaa tgaagtgtgt agctgaattg cctcaaaaaa
       61 tttgaaataa gcacaaaaaa atgatacatt attgcagccc ctcccccccc aagccctgga
      121 ttctagctca gttagagagc tttttccaca agtgtatgtt agctttttgg acatgtaaga
      181 cacccaggaa atcccccttc tcgtaacatt ctccgcttgg atctgatctc aacagggtgt
      241 cgtagtcaat cttcagcaca gttcttaagt ggagaccaag aaccctgggc ctttagaggt
      301 ggtctagcag gagagttcca ggtatcaata tgacttcaca actgaatgac gttttctttg
      361 ttttatgaga aaccttttgt tgcacatcag aggtctggaa ggattggtct gccgaaggct
      421 ttctggtcca aagcccatta gccttacagc ttggtttaaa ataattttcc tcccctttct
      481 acagtaattt ctcaaggaga tgctgcctgt cccacgcgca tgcgaagcgc agcggcttta
      541 gttgtacatt tcacatcgtt tctttgcagg tcacacagca tttttacctg cgcccgcaat
      601 tgcacaatgc gcgcatgctt gtctgccgat gggaattcca tgagcatcgt catccaaatt
      661 ttggttcctc tcgaaataat gctgtaatgt gctttattgc gaggaattca attggcaaat
      721 att
//
LOCUS       KCOD01002484             645 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 276419pyr ultra-conserved element
            locus uce-1133, sequence.
ACCESSION   KCOD01002484
VERSION     KCOD01002484.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 645)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 645)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..645
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="276419pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>645
                     /note="ultra-conserved element locus uce-1133"
BASE COUNT          205 a          107 c          115 g          218 t
ORIGIN      
        1 ttatgaagca tttcctgtga gctgcttgtt ttgcacagct caggtaaaag gagttggcag
       61 catggtgtca agaataaact ttaaaaggac tctctaaaag taatgcttgg aaggtattca
      121 tttgaccttc agtgacagag cttatgcctt gcaaattgat taatacagat acaatatcaa
      181 atcatttttc atacaatttt ttaatgtttg ttaaatgctg gagcagtatg taaacagagt
      241 atttggcatt tttattaggc tgcggaactc agtcatttcc tttgcaacaa catctcataa
      301 actattttga cagtctaata aactataaaa agctgtggta aaaactggct ctgaatgtta
      361 taaccgtaca aaatggaaag agcaagagaa aacatctatc actgagatta ttatcactgt
      421 tgccatggca acctggttgc aatggcaata tctccatggt tctgctgttt gttatcatct
      481 ttcttgattt tacatcattg aaattgtagt aattacactc tgcctgatga aaaatgcatg
      541 ctgtcatggc aactaagtca aatattctta atcatttcac ctcttcaatc taaaatgtaa
      601 ttgtttgtca gtaaaatagg ttatacggaa ggcttctatg gactt
//
LOCUS       KCOD01002485             617 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 276530pyr ultra-conserved element
            locus uce-748, sequence.
ACCESSION   KCOD01002485
VERSION     KCOD01002485.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 617)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 617)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="276530pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>617
                     /note="ultra-conserved element locus uce-748"
BASE COUNT          179 a          114 c          147 g          177 t
ORIGIN      
        1 ctagaggcct cgtttaattc actaatctaa agagaaaaaa aataaggtac tgctgttggt
       61 acattatttc tgcttaacag acaatatcag taattgaata tatttctgct ggttttgtga
      121 ccatatgcct gcaatatgta atttttttta atttcttttg ttcccagtac tgactgcctg
      181 tcagagtgaa ccctccagat tcctgtgtgt tggtatccat gggctctttc ttgccaagct
      241 gccagtctgg agcgtcacac cttactgcct ttaaagattg ccctgcagag atagaggaaa
      301 atggcaattt ttacatgatg cagtctggca gcccaggaga tttgaagtca gaactggtgc
      361 caagatttac ccaggagagc aagcagaggc gaacctgggc caaagaagag ggaagtgaaa
      421 ggcaggaaag cgtggcagag tgttttttga tcaagcgtgg aacacatgga cactacatgt
      481 tgtttgcatg tgtttattga gagggtcagg gtcctaaaga aagtcaaaag gaagaggtcg
      541 gctttttttg catgccccaa attgtagtag attgcagaat gtaaatgaga caattattac
      601 accaatgctc atcaagc
//
LOCUS       KCOD01002486             633 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 276639pyr ultra-conserved element
            locus uce-7775, sequence.
ACCESSION   KCOD01002486
VERSION     KCOD01002486.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 633)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 633)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="276639pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>633
                     /note="ultra-conserved element locus uce-7775"
BASE COUNT          203 a          112 c          100 g          218 t
ORIGIN      
        1 taattgcaaa atatcaatct atctcactta tgaatatgca aatgttatgt cagagtggca
       61 taagtttcca gcatacagta ctctgctagc tttaattaga tcaaaagtgg gtccagctca
      121 attcaacaag atgggcccta ctctttaatc aggaaaataa gtttgtctcc taacagtatc
      181 ttcttttgac agtcagcaaa cactaattaa cagacatagc tatattaatt gcattactcc
      241 actgtattct tatcagctgg ctgatgttgc ctgtttgcta atgcaaatag ttgctgcttt
      301 ggtaaagtca acttgcaaaa gtctttctaa tgctaactag caatcaatgc atataagatt
      361 tctaagattt ctgtagggaa ttctgcataa tagatgtatt ctgtcttttg aggtatccac
      421 ggccatttag tataattatt ccttagagct gcacctatca tattatcagc tttttcggag
      481 gataaagaac acaacttatt tgtttaagaa caaaggacta taatcatttc ctttaggaat
      541 cactaaatca ctatgttaaa tgaagatgta tgacccaacg gaaaacttgc atttatggta
      601 attaccttaa gattctttta gtgtctttta aaa
//
LOCUS       KCOD01002487             764 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 276737pyr ultra-conserved element
            locus uce-6084, sequence.
ACCESSION   KCOD01002487
VERSION     KCOD01002487.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 764)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 764)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..764
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="276737pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>764
                     /note="ultra-conserved element locus uce-6084"
BASE COUNT          200 a          199 c          200 g          165 t
ORIGIN      
        1 aggacttgaa tgaagcaaca agttctgcac acctgggtga cagccaagac ttcacagcat
       61 ttcctcctca aactgcagta atcgatttct aaaaaggtac agcacccagg tggaatccag
      121 gtaccagcct gacaccagca ctagaagagg aaggcgcttg gaaaaaattg gaaacatgca
      181 gggagcaaca tttcttctcc cccagctgcc agaggaggcc aatcaggact tggaccccca
      241 tctctgcccc gcacaacccc gtcccaaaag cagggagggg agaggactaa tgagctgctg
      301 attgccggag agcagatcgc agaggctcca ctccgtctgc ccagtgttca gactacctgt
      361 tcaggactac gagattgtac agtagtctgc acattggtta ggctgtgctg ggatacacca
      421 cacactgcca gtgctgcacg gggacggcaa cacctgcacg gcagagggac atgcttggag
      481 agggtgggct ctggggatgg ctgcatgcag aggtcactca tccctcaccc tgggagggta
      541 accctttgga gccattttac ctgcctgttc accagcctac tcacaaccct tttcattcca
      601 ttcttatttc tttcagtttc atgtgcttgt cccttcagga tggcttgtgt ttcacatgct
      661 aagaaaatgc agaaatagac acataggaga gtcacaactg ggtgtgcttt gctacctgag
      721 aaggcagatt caagcacaga aaggtgactg gagaaagggg agtt
//
LOCUS       KCOD01002488             434 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 276838pyr ultra-conserved element
            locus uce-2732, sequence.
ACCESSION   KCOD01002488
VERSION     KCOD01002488.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 434)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 434)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..434
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="276838pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>434
                     /note="ultra-conserved element locus uce-2732"
BASE COUNT          105 a           64 c          122 g          143 t
ORIGIN      
        1 aaaaaaaaaa agcctcgaga ttggtaattt tctttttggt ggactgcgca ataggtatgg
       61 taattttaaa agagggtgat ttatatgagc ttcagtaaat gctgcatatt gtatttcaaa
      121 gagtttcctg tcgtgacctc ataaaaagag gaggaggctt gtatgtgttg cagtgcctag
      181 tatatgtcga ttttgttgca tcgttgggca gcagcgctgt aagaaggaat gtcagctttt
      241 acataacgct ctttttgctt ttgactctgt gaggggctgt aagggtccat ctttgtgatc
      301 acagatggag tggaatggct tgaaaatggt aagtgaacgg ggagcctgct cgtggggttt
      361 tgtctcgttt tgcctcgcga atttcttttg ttcagggcgg cggatcgtga gtcataaaag
      421 agagccttgt ttgt
//
LOCUS       KCOD01002489             658 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 276950pyr ultra-conserved element
            locus uce-3489, sequence.
ACCESSION   KCOD01002489
VERSION     KCOD01002489.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 658)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 658)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..658
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="276950pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>658
                     /note="ultra-conserved element locus uce-3489"
BASE COUNT          254 a          123 c          121 g          160 t
ORIGIN      
        1 ttattacaca aagagccaac attttcaaga atgagtgcta aagctgtaac actaaataag
       61 ctcataaaaa gcaacctttt ttactcctgc acccatttta aagtcaccaa taagcactag
      121 tcagactgca gaatgtttcc accagcaggc ttctgaatat gcataatgcc aataaagtta
      181 attacatttt agtctatgtg caattaagat actggcaaca ttttaatgca aaaaaaatgt
      241 ttaaatatac taacatccta gtcttgggat atccagtcaa gctacgcaaa gagatgtgtt
      301 tgtcccttgc atactcccaa atgtggaagt aggatcagaa actggatctg gaagaaaggg
      361 taaacagcac gttagttaaa ttcacagaac tacgttcgga gatgttgcaa acattagtga
      421 agacataaat gagaaaataa aaaataactc caaacactca accacaagga tagggaagaa
      481 aatgtaaaat gaaaggaacc tagaagagca acagtggaca gtcagctaaa tatttgcatt
      541 gaaagacagt ctggagttgc agaggcacca aacagagcag ggaaattaaa gttctttcta
      601 cagtctttga gccaataaca atagccatct ctccgcacaa ttgccaggga ctgaaaaa
//
LOCUS       KCOD01002490             660 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 277060pyr ultra-conserved element
            locus uce-7295, sequence.
ACCESSION   KCOD01002490
VERSION     KCOD01002490.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 660)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 660)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="277060pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>660
                     /note="ultra-conserved element locus uce-7295"
BASE COUNT          195 a          137 c          106 g          222 t
ORIGIN      
        1 acacaaacca ccaagaattt acaatacagt ttttcccctt ttgatgcgaa tgtttttctg
       61 tacaagtggt ttgttatcta atactgttta aaaagctatc agcttcttca agatgggtag
      121 gcatgataat attccaggaa cacttaaata acagttttta caataaattt taggtccata
      181 tcattagatt actttatatg cactggtctc tcatctgatt ttaggcgttt tctacgtggt
      241 tgtataaaat cttcatcgga gtcctcagtt atttcaccat catcctcttc ctgctcaaat
      301 tcaggcaaag gctggaaggt cctgtctgag tagatctctg taagtttatc ttcaaagtac
      361 aatgcaactg ccttccctgc ctgtgctact tctgaatcag cctgtggatg aaagaagaca
      421 ggaatattca cctgttggaa atgcacatcc cttcaccaag tgtgcatggt ctgaaacgct
      481 taccttcaaa ttaatctctt gtgtttctgc ataaacttga acaactttca tcatctaaaa
      541 aggataccag agtctgaaat tataatcctc gcacaggatg ttatggtttg ttagctttag
      601 ttcccaaact tatttaaaac agtctttggt aaataaacct tcaacagaac acacaacttt
//
LOCUS       KCOD01002491             453 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 277171pyr ultra-conserved element
            locus uce-392, sequence.
ACCESSION   KCOD01002491
VERSION     KCOD01002491.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 453)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 453)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..453
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="277171pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>453
                     /note="ultra-conserved element locus uce-392"
BASE COUNT          144 a           83 c           72 g          154 t
ORIGIN      
        1 gttattttcc taaagattac atttaatatt gttggtgtac ccttcataat ttagttgatt
       61 aataatattt gatctaaacc caaattatga cttcccacat atatgacata actaatgaac
      121 tgtgaaagga aagctgttca gatggtcacc aataaccaat gcttagttaa tcctttaaat
      181 aaactggagc tcacaatgtg tccctttgaa gtcataaata atgtatattt ttcttttgac
      241 ttttaataag ccagtggagt tcatctcaca gtctccaaac acatatattt tattatgggc
      301 ctctgcagtt tactttaatt agtgtgtctg agtgctttgg gagacttagc cctactgaaa
      361 acaaacagag ccttaccatc tataaaacat tagctccctt tggtttatcc tgatacagcc
      421 gaggctcagt gagaaacaca tggtgtaagt aaa
//
LOCUS       KCOD01002492             448 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 277274pyr ultra-conserved element
            locus uce-6171, sequence.
ACCESSION   KCOD01002492
VERSION     KCOD01002492.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 448)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 448)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..448
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="277274pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>448
                     /note="ultra-conserved element locus uce-6171"
BASE COUNT          168 a           80 c           78 g          122 t
ORIGIN      
        1 atctaagcca tcactgattg ctgctagact caattttaga ggtttatatc ttcataatct
       61 atcaaggagt aaagctgatc taatttgtgt gcacagcacc actgactgtg gacatttaat
      121 gaacagtgca cttgacagct ttaataaaac atagcatttg ccagcagaga taattagaat
      181 tgaagcacta aaattctagt gtttggcaac acagatgaaa caacttcatt aaaatgtaca
      241 gcttcagtga atgaaaggca ggaaagcact ggaccctgaa gaatcagcct tctcaaaact
      301 aattgcttca gtgcttaaaa aggacagcta tgaaatacca agggcataac aaggaaatac
      361 tagtattaaa aagaaaccac agaagataaa tcaggctttt caaatagaac tgaactgtat
      421 ttaggccatt aaacttttca ttctaatt
//
LOCUS       KCOD01002493             589 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 277382pyr ultra-conserved element
            locus uce-5657, sequence.
ACCESSION   KCOD01002493
VERSION     KCOD01002493.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 589)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 589)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..589
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="277382pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>589
                     /note="ultra-conserved element locus uce-5657"
BASE COUNT          171 a          118 c          135 g          165 t
ORIGIN      
        1 ggcatgagac tccaagagca cggtggcaat ggcagcacag ttttaccttt atctttcatc
       61 ccagcagcag atccgtcaat atggagcgct ggcttcagct cgcccccatc cctccatcct
      121 cttccctgtg actacagccc ttaaatgaaa actttatggc aaagagctgc tgacgcttct
      181 tcatggaaaa gatacatggg gtggctggtg gctaatgagt gtcagtactc caaaggataa
      241 tctctgcttc tctctgatac aatttaacat cgtatttccc taatttgaag ctgatttagt
      301 cgctggggta tttggatgcc tcttctatgg tgccgatagt taattaaaca gatgttgcag
      361 agggaatcat taattttagt gctgcagatg ggagcggaat gactttgtga agttaatgtt
      421 tcagcaaaac aataggcttc tgtcatcagt tgctataaac caagtaaatt aagagaacaa
      481 gtagagtaaa ggagatagct ttgaaagaat atcaattatt cattttagaa ttgtactttc
      541 atcacaggaa gctgggaagt gggaaagaga ggaatcccca agccagcag
//
LOCUS       KCOD01002494             657 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 277591pyr ultra-conserved element
            locus uce-4674, sequence.
ACCESSION   KCOD01002494
VERSION     KCOD01002494.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 657)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 657)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..657
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="277591pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>657
                     /note="ultra-conserved element locus uce-4674"
BASE COUNT          188 a          166 c          121 g          182 t
ORIGIN      
        1 cactcttctc ttgccagccc cagctgaact ttgctcattt tggaggaaag ccatggcagg
       61 agcctgggac gtggcggctc aggcggcctc accccctccg ctccagcatc tggccatctc
      121 gcattcacaa cgtgtccagc aaagtttgtg tcagggggtt taaactttag atttgtgtga
      181 ccaaggaatt cccaattctg ttgcatgtgt tcccctgtct ctcgtctttc tcttggctgt
      241 gaaacagcac aaggagactc tttgtatgct cctaatcctg aagcaacaca gctttagcaa
      301 catccaggga taaaagcacc atcaaaccac aactttatgg gggcaaatct cctctaatcc
      361 ctcgctttag ctaaacaaag cttcttgccc taatccgcta tcgctttaaa aaaaaaaacg
      421 ctcagatttt gtttttagta agaagatgat ccaaaggact aattttaaga gagactaacc
      481 aactctgaca gcttttaaaa tagacgacaa gaaaatagat gcaaactttc ctctcaattc
      541 aagggttttc aggctatgca ataagaaaaa tatccagggt ttaactgctt tcctttaagc
      601 tcacttttat tgtattaaat gctctgacca actcagattc aaatcaccag gcccaaa
//
LOCUS       KCOD01002495             943 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 277701pyr ultra-conserved element
            locus uce-1427, sequence.
ACCESSION   KCOD01002495
VERSION     KCOD01002495.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 943)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 943)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..943
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="277701pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>943
                     /note="ultra-conserved element locus uce-1427"
BASE COUNT          301 a          147 c          146 g          349 t
ORIGIN      
        1 atagctttaa agctattatc tcagcttaaa atttcagcgt cctatacttt tttcttcacc
       61 aaactatcca tttttaaacc acaaatattt ttccagtcct ttcagatttt atctaaaagt
      121 atattttaac agtatttaaa tagttcttaa acaataacaa tttatcttga tagatgacat
      181 gctgtgtttt ttcattttat tttaattagc cattgtggaa ccaaattccc ttttgtttta
      241 ttcctttgaa tactgtttaa ttatagttat catgccaaat atcttaaagg ttattttacc
      301 aatacagttt catttaacat aagccatgtg gaatcaatag tcctgtttcc taaagtgaat
      361 gcttggaaaa tcttacattc atatgttaag agtacacatc ctttcctcat tagctggaaa
      421 gtacagggat tttggcacag gttctgtgtg gaagcattgt gcagctttta tatggatttt
      481 gtttttagcc tttgatgaca ctgtttagaa taggaagtat ctaataagta aagcattttg
      541 tctaatgtgc tgccagtgtg tttaatatat gcctggaggt ctgaaacatt atcttctcca
      601 ctatagtaat atgcatttaa ttctctgaaa gcagaaggtc gaactcttaa aagggactca
      661 aagtacattt tcaactaaaa caattaaaaa cacatggtat aggggaccag agcaatgtac
      721 ggttggtttt tatggtttaa tcatgatcat gttaatgcac accagtagct aattaaagaa
      781 aacttttatt gttcatttta aatgggttat gtaaagagta agagaattga tataatacag
      841 cccaatgata aatgttacca ttacatttgc taacagcaag atgatattgc tgttcttgac
      901 atctttaaag tattggccca tttattctgt aatacagcac aga
//
LOCUS       KCOD01002496             758 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 277814pyr ultra-conserved element
            locus uce-3462, sequence.
ACCESSION   KCOD01002496
VERSION     KCOD01002496.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 758)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 758)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..758
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="277814pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>758
                     /note="ultra-conserved element locus uce-3462"
BASE COUNT          230 a          156 c          118 g          254 t
ORIGIN      
        1 tagcaagttt gatttctttg tcggtgccac acacagcccg acccgttttc ctaagagctg
       61 ttgcatccaa acgctgctga ggctcctttg taaacgaatg acacgcattt aaaatacctt
      121 tgtaataata aataccacat gaacatatgt atcaagcaaa ggatttcaat tttgatgaca
      181 cttgcttctc aagaacagac attctggaag aaaaaaatgt tgccagcccc aaattgattg
      241 acatttgttt acttaactct ctcttcttga aagtctgcac acctatttca accttgaaca
      301 gtttccaact gtggtatact ggaacatttt ttcatttatt aagttcagtg ttgccaaccc
      361 aaacaaagag taatcagtga tgatccaagc agaccaagct gtctagcacc atacaatgta
      421 tctgcatgct aattttcaaa ttccctcaca tttccagaga actaatggga tcattttcat
      481 tctgttacag caactcaaca gttactgaat caccatctgt gttttcgtta acctgaatca
      541 gatataaatt ctgttattgc aaggtagagc agcttgttta atgattctta atcttttctt
      601 taattaaatc atgcagccaa cctgaaaaat ctatcttaat gcaaattagg agcttttttg
      661 gcattcgctt acagtaatgc actaataagg ttaatttatg aaggttctct tccagtctgt
      721 acagatgata tttgttcgct gcatattttt agcatatt
//
LOCUS       KCOD01002497             681 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 277925pyr ultra-conserved element
            locus uce-131, sequence.
ACCESSION   KCOD01002497
VERSION     KCOD01002497.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 681)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 681)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..681
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="277925pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>681
                     /note="ultra-conserved element locus uce-131"
BASE COUNT          228 a          116 c          151 g          186 t
ORIGIN      
        1 aaaaaaacgg gggtggagag agttctaata attcaggtat gattaaaaag aggatatttg
       61 ctggcttgta ggccttgggg agaaaaaaac aatgtggcag catagtttct atatacatcc
      121 ctagggaaaa gttcaagaaa taagaaaatg catacaacca ttgttcgtgt gcattatgca
      181 agctttaaaa aaatagatag ggctgagttt cagagtatca ggaaaagtat ttgggctgca
      241 tttaagtgag aaggattagc ttgcatgatg ttgatttata aatggcaaca accaatccct
      301 tatattctct cctgcagcca tctctcctgc acagtaattc ccaatgttcc cttttgaaag
      361 cccttgatac tcagttagcc ccgaggtata atgtttgata atataactac tgcttctgtc
      421 actgcgtttt gtacaaacgc attatatgtg gcccagaatg gtaaagattt atgtatgggt
      481 atggaaaata aaaatcagca ttgattaaaa gccccagata gaccatccaa tcccgcccag
      541 agaacatcag ttattttgca ttttgacgtg gcgattgata actcataaat gcaagcagga
      601 atgacaaatg cggatggaaa ctggctttga caaaaacgat aacagtatca gtctcgaggg
      661 gcgatggagg tataagcagg a
//
LOCUS       KCOD01002498             657 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 278037pyr ultra-conserved element
            locus uce-726, sequence.
ACCESSION   KCOD01002498
VERSION     KCOD01002498.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 657)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 657)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..657
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="278037pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>657
                     /note="ultra-conserved element locus uce-726"
BASE COUNT          187 a          158 c          143 g          169 t
ORIGIN      
        1 tttttgaaat atcagtggct tcacgttaat caatactgat gagtttgtcc ttgacatact
       61 gaccgtgtca tcgggctatt gtcatgtgat atcatgtcat ttccccacct ggctcatgac
      121 cttgtccttt aaatgaccca aagcttaagt agcaggaggc ccctccccgc tgcctcagca
      181 aggtcgaacg ggtcagcgtg tcctcatcta taatccacca ccatttgtca gcagggaggc
      241 tggaggaggc aggcttgcta caaggggaga atgcccaatt aggcagctgt cacacaaagc
      301 ataggctgca aaattatccc ctgtcaaaag aaagagcagc tgcgggtgcc aattacagca
      361 acctttcaac cctttaggta ctggaaacta cacagaagta aatgaagtac aattagtgat
      421 aacaaatcga tgaattagga cagtaaatta gaaattacta gcaggtgagc ttaggtctcc
      481 cataatatta agggcacagc acaccccagg caagggcagg aatgtacaga tttccacatc
      541 agttttttct tatccgtgtc ttccttgtcc ctctgtcgtt ttcttctcac aagccagata
      601 gtgccgggaa aggaaaagaa gttgtagcac ccaatatgcc ctctttatcc tggcaaa
//
LOCUS       KCOD01002499             713 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 278354pyr ultra-conserved element
            locus uce-4853, sequence.
ACCESSION   KCOD01002499
VERSION     KCOD01002499.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 713)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 713)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..713
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="278354pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>713
                     /note="ultra-conserved element locus uce-4853"
BASE COUNT          233 a          135 c          137 g          208 t
ORIGIN      
        1 tagtaactct tgtcaattaa ggagggtata gtctactctc aattcattaa atgcaccaca
       61 attgtcagtt agtgacaggc tcaggggagg ccaggactaa gtaaacataa gggatgaatt
      121 atacaagaag agcacagttt aaatgaggcc ccctttatat aacatgttta tcaaaatctc
      181 aagtaagcta ctatcattga taaaagtcca aacccttata ttcttgaagg gaagaaagca
      241 gttgctctcc tttgacggtt tgaaaagatg tttgtaccac tcactgactg gctaatgaat
      301 aatcagattt cacagcttga gtgctggggt ggtaatttgg ttgcacgcca tgctccaaat
      361 ccatggaata gtgcttcatt aatgtgaaga cctgtataat caaacaatta gcagtctctc
      421 tgctgctaaa gcagcttttc atcagcatat atacttcgtt gtaagatgag tctcaaatta
      481 ctggatctga cagcaactag tcttttacta aatcacagca gtagtaaagt agggtggaca
      541 gaacaaaccc atttctacat atgcaagatg ttcattctat ccatgccaca tgccatatgt
      601 aactatcatt gagaaggtca tgacattgta ggtgaactga aattgcactt aaatgagtaa
      661 atcacagatt caagcaccat aaattggcag tgaaatgttg ctacttctca ctt
//
LOCUS       KCOD01002500             307 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 278454pyr ultra-conserved element
            locus uce-3317, sequence.
ACCESSION   KCOD01002500
VERSION     KCOD01002500.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 307)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 307)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..307
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="278454pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>307
                     /note="ultra-conserved element locus uce-3317"
BASE COUNT          125 a           57 c           48 g           77 t
ORIGIN      
        1 ccctctctct cttttgcaaa atataaaagc tgatctgata aatattaatt tgaaccatca
       61 taatgtattt gaaaattcca gctaaaatgt caccacatgg aacattaatg taatatttca
      121 aggccctgag agcaatactc atattgattg catttatttc actctaggga ggagaaataa
      181 ttcttcaatg tgggacacat ctggtagcca aagatgcaaa aggctgaggg tagaaatgca
      241 aaaaaaaaaa accataacat aacaccccaa aacaaaacag aagtacaagt gaacctgaca
      301 aatgcaa
//
LOCUS       KCOD01002501             876 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 278560pyr ultra-conserved element
            locus uce-3535, sequence.
ACCESSION   KCOD01002501
VERSION     KCOD01002501.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 876)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 876)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..876
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="278560pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>876
                     /note="ultra-conserved element locus uce-3535"
BASE COUNT          294 a          157 c          196 g          229 t
ORIGIN      
        1 taagaagtct aggagcaaat ttaagattgt tataaacctg tggtaacctg gctgttttcc
       61 tcacctggtc cctgacctgc ctgctccaga gcaacagcac ggtactttct atcttcaaac
      121 tgacatgacc catcagagtg acaggggaga gaaagggctg ttatttgttc cccagctggt
      181 gacagtaatt ttgtccatga actaggtact tcactgccaa acaatctgga aaagcatgat
      241 aatgcctgac tcactgtgcc ttatagaaaa aggcaaacat gcatttgcat tttctgaaat
      301 tctatcttgt tctggtttta caagaaatta aagcatttca aatggtggaa attatagaaa
      361 ataaccgttg ttgttttgca cagcatacca ttcacagcta gcgtgaaaga ccttccgttt
      421 caagcctttg ccctttacct tgatgtggcc aatgctttct agtggaggtt ttggaaggag
      481 aagaaatatc acagcatttc tttctttgtt gagaatgaag aagtgatgag gaaggaggag
      541 tggaaagaag tgaggaaggg ggaggagaaa agataaaaga taacaggtgt gagacatgag
      601 acacgaaccg cagagattga agggtattaa cagatgagca cagaaaacgg aatttcgaat
      661 ttcattatgc aattgctgct catgctacag gttaaagaga gtgatgatgt gcaatgaagc
      721 aacagctctg aaatccagca tcatacttac caactaagca ttacaagaaa aaaaggaagg
      781 gagagagaaa gaaaagaatt ctataacatt atccagatcc agcaacctta ttaatagtaa
      841 ctgagataca tcctaaacac tgtctgaaat gcttgc
//
LOCUS       KCOD01002502             654 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 278672pyr ultra-conserved element
            locus uce-4912, sequence.
ACCESSION   KCOD01002502
VERSION     KCOD01002502.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 654)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="278672pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>654
                     /note="ultra-conserved element locus uce-4912"
BASE COUNT          203 a          123 c          115 g          213 t
ORIGIN      
        1 aatgtcttaa aaagattgtg gtatgtttcc tggactgaat atctatgtca taaaaaggcc
       61 actgaagtgc tttccccttt ccatttacct tttagtttag atcaattgtc atccatctga
      121 acacgaaaag tcacttctga tatctctatc tgaagcaatc aataaaacaa agaagaaatc
      181 aatgacattt tctcaagcat gaaatggtgt tttgggggat ttgctgaagt aatgtttcag
      241 taaggaagga aataccattg actttattac agctgcctaa tgttttccac gaactgcaga
      301 aaataattca ttgtatctta gtgacctaca ataacagctg actgcttgca cttgatggaa
      361 atgtgatttg tgtctactaa aaattaacta tttaacttct ccatattctt ttctctgcta
      421 gcacatcagt ttcctttgca ttctgtttcg aactgctttg tgagatgtga actccagaac
      481 caccaattgc taggcaatgt tcctccatga aagaaggaaa atagggtcag actgcacgct
      541 tctgtgagct gtaaaactca tgctagatga ggccccttca ttttaacagg cattttatct
      601 cagaggttca ataatgtaat aaatataaag gaacatttct gacagttgca catg
//
LOCUS       KCOD01002503             862 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 278785pyr ultra-conserved element
            locus uce-1309, sequence.
ACCESSION   KCOD01002503
VERSION     KCOD01002503.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 862)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 862)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..862
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="278785pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>862
                     /note="ultra-conserved element locus uce-1309"
BASE COUNT          259 a          231 c          157 g          215 t
ORIGIN      
        1 cttcgtattt tacacctcaa cttcctggaa cagtgcaagg agggtacctc ccccccgtct
       61 gtggtatgga gagcctcttc ccctacggac cagcagtgcc tcagacaatt gctggcttgt
      121 cacctggtgc actgttgcag cagtaccaac agtatcagca gaacctccag gattcattac
      181 aaaagcaaca gaaacagcag caagaacagc agcagaaaca agttcaagca aagtcatcta
      241 aagcagagaa tgaccaacag caaaactcca gtgacacttc ggaaacaaaa gaagacagaa
      301 gttctgctac agaaagcaca aaagaagaac cccagttaga ttcaaaaagt gcagactttt
      361 cagacactta cattgttcca ttcgtcaagt atgagtttat atgcagaaag tgccagatga
      421 tgtttactga tgaagatgca gcagtaaatc atcaaaagtc cttctgttac ttcggtcagc
      481 ctttgattga cccacaagag acagtgcttc gtgtcccagt cagcaaatat cagtgtcttg
      541 cctgtgatgt ggctatcagt ggaaatgaag cacttagcca acacctccag tcaagcttgc
      601 acaaagagaa aacaatcaaa caagcaatga gaaatgccaa agagcatgtt agattattac
      661 ctcactcagt ctgctcccct aatcctaaca ccacatctac ctcgcagtct gcagcttctt
      721 ctaataacac ctatcctcat ctttcttgct tctccatgaa gtcctggcct aatattcttt
      781 tccaagcgtc tgccaggaaa gctgcttctt ccccttcttc tcctccttcc ctttccttgc
      841 cttcaacggt tacctcaagt tt
//
LOCUS       KCOD01002504             442 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 278888pyr ultra-conserved element
            locus uce-2666, sequence.
ACCESSION   KCOD01002504
VERSION     KCOD01002504.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 442)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 442)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..442
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="278888pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>442
                     /note="ultra-conserved element locus uce-2666"
BASE COUNT          114 a           90 c          115 g          123 t
ORIGIN      
        1 agccttgtcc tcaaggctgg ggtgacctgg gaagcagata gagctaccgc ttggaagtta
       61 cttttctgac agtatgttca tcatattttg agcttcctag atgaagtgac attgcttatc
      121 tcctcgaagg caaaagcatt aaacctgttt cttctttgct cttcaggaga aaagctgccc
      181 ttacattcct ccgaagaagc tcaaaatctg atgggccagt catcaggtaa aacactagag
      241 ggaagtaagc aggctttggt tgaaattcca taaataggac tgtgccgttg ttgtgctcca
      301 agaggaatcg tggtattcat ggagagacag caggttttcg tggtgggcag gcagagatct
      361 tctccttggt gcagcggaaa agtgcctgtt tgtgatgttt gtgtgtaact gccacagaac
      421 cacagaatct cctgagctgg aa
//
LOCUS       KCOD01002505             499 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 278991pyr ultra-conserved element
            locus uce-5693, sequence.
ACCESSION   KCOD01002505
VERSION     KCOD01002505.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 499)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 499)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..499
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="278991pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>499
                     /note="ultra-conserved element locus uce-5693"
BASE COUNT          154 a           97 c          122 g          126 t
ORIGIN      
        1 gctggagaat tcccaggcga gcttgaaaat ctgacagctt cccagagttt tacatgggaa
       61 aaactacata cctgtgtgca gcagggaggg gtgcccacgg tgtctgcact gctaaaaccc
      121 aggtttctgt tggacatcag gtcttcttcc ctctgcaaat taatgggaac caatggctga
      181 tccagcattg tgggcataaa tcatgtgaag gaacagcgag aaatgagtac aaggcttttc
      241 tttctattta gtaatttatc aagggaagtg gcacattaat aaacagatct cccttgagat
      301 gtgggagtaa cagagataaa tatgactgtc aaatctggcc tgcttccttc tgttagagaa
      361 ggaggagact gtgggaatgc aaatgcagga aacaatatct atatctggaa agacacatat
      421 tatttgtagg acagaaacac tgacagctca tctgagatgg ggccccatcg cacttggtgc
      481 agtacataca gaataaaat
//
LOCUS       KCOD01002506             525 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 279101pyr ultra-conserved element
            locus uce-5671, sequence.
ACCESSION   KCOD01002506
VERSION     KCOD01002506.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 525)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 525)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..525
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="279101pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>525
                     /note="ultra-conserved element locus uce-5671"
BASE COUNT          162 a           92 c          106 g          165 t
ORIGIN      
        1 ttctccttct acctaatttt acgcaggctt gatacaaccc agcagtcaga aactgtagct
       61 gttttgtttg cagttaattt agctctttct cgacattttg ccagtgatgt gatcataaat
      121 tttggttcca ggaactaagt gaggtacagg taccaagaag atgttatgat gccagggtgt
      181 gaggaagagt taaatctttt tgacaattca atggttccct ttgggtttgc acaaatggca
      241 cctgttgttg aagtcaatag agcttacaat ttaatttcat ctgcctgcaa acaatctcac
      301 tcattagggg gtgaaatgat gatagaattc actgaggcat gcagtttcac tttctacagg
      361 gcactacgta agtacagtca tcattttcag tgaagggagg cacaattatc ttggaaactg
      421 attgtaaagt agaagaaagg gaaaaacacc ataaaaattc agtctcacta catgctgatg
      481 ccaatttgca atctaattat tatatttaac acaatatgga aatgt
//
LOCUS       KCOD01002507             460 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 279210pyr ultra-conserved element
            locus uce-4402, sequence.
ACCESSION   KCOD01002507
VERSION     KCOD01002507.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 460)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 460)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..460
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="279210pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>460
                     /note="ultra-conserved element locus uce-4402"
BASE COUNT          163 a           82 c           72 g          143 t
ORIGIN      
        1 ttactttcct tgcacgaaat atcacccaga agagtttatc tatttttgag cataacaaaa
       61 agttcacctt ttcagagtgt gctacacgaa gctttgcctg ccttttatat agtaaagtaa
      121 ttttatggta ttgtgtcaca atgaaggaca aagccaactg tttagattcc tgttgtggct
      181 ttgatcacta acaatgctgc atgaacagcc aacagaaggc tgacatttca taaaatatgc
      241 agtgataaaa actaatactg tagcatctgg gagcgatata taaaatgcag aaatacacct
      301 aataactgtg atcttaaatt acaagttact aaaagctaaa taagcagcat acctaaaaga
      361 aagattaaga caggattttt gtgcttctgc tcctaaaaac aaaaaattaa tccaagatat
      421 gttatctatt attcttaaca attcctctgg ttcccttgta
//
LOCUS       KCOD01002508             344 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 279314pyr ultra-conserved element
            locus uce-7907, sequence.
ACCESSION   KCOD01002508
VERSION     KCOD01002508.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 344)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 344)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..344
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="279314pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>344
                     /note="ultra-conserved element locus uce-7907"
BASE COUNT           88 a           76 c           72 g          108 t
ORIGIN      
        1 tttttttttt ttttgcagtc ttagcataaa atggtcaaat gatgttccac cgcagaattc
       61 aatttcacag ttcagttggg tccttgatta cactgccaaa ttcagattaa tgtgcattta
      121 actaacatgg atcagggact cctggccggc agccagcagt gatagtagca accgtgggct
      181 gagagtttgc tgctctgtcc atccctgtgc actgccactg aaattgattg attaaatgaa
      241 cccattgcca taattatttg taattgtgct acatgatgag cctgtgtcaa accaccccga
      301 gatgctccac acatcgtcag tgtgaagatg ttcttttcca gagg
//
LOCUS       KCOD01002509             694 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 279423pyr ultra-conserved element
            locus uce-1863, sequence.
ACCESSION   KCOD01002509
VERSION     KCOD01002509.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 694)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 694)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..694
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="279423pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>694
                     /note="ultra-conserved element locus uce-1863"
BASE COUNT          216 a          158 c          130 g          190 t
ORIGIN      
        1 aaatgaaatg agaattaggt ttccagttcc tgtgctttct tgctcctagg aaagcccagc
       61 cctaattgat gattccctgg agtcacggtt atatcacact atttctgttt ctgctcaaaa
      121 ggttcagggc ttttatacca gaaatggaac acaacactac cttcggggat tttaataaat
      181 gtagggaaca ctgctagcaa aagagttgct gtccaaatag actgacatac acaggccaat
      241 gtagcctcta atgacagagt aagataatgt caggccccac tcaaaatcag caggaagagg
      301 aagatcaatc ttggcagagt gaaggaaaaa tgctggcttt cttcatgtta gctcatctca
      361 tacatatcta tcttcagctg ctgcccagta ctatggtgct ctgcattaac tacacagtgg
      421 atcaataaca attacacctt ctcaaaaaca tgacacatag caggattggg ttgacatttc
      481 acttaggcca acattgatct ctgattccag tcctaaattc aagtcaggcc tgagtctagc
      541 tggaataaac acacagttaa aaacagaaaa ggaaaccagc tgcttgtgcc ttggctcaga
      601 agtaaacagc acatccatct gtgcatcccc catctccaat ccactattct tcctgttgct
      661 actagtgatt ctaaagttga tcaaagacta tttt
//
LOCUS       KCOD01002510             399 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 279530pyr ultra-conserved element
            locus uce-2505, sequence.
ACCESSION   KCOD01002510
VERSION     KCOD01002510.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 399)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 399)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..399
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="279530pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>399
                     /note="ultra-conserved element locus uce-2505"
BASE COUNT          156 a           58 c           83 g          102 t
ORIGIN      
        1 acctgtagaa atctccggaa acgtttgaaa tttcttcagc tggctgtata tcaagcatac
       61 agtgaaaaaa ggaaatagaa ggaaagtaga aaagaagggc aaaaggcgaa atggtttgtg
      121 tccatttaag aaaaaatcaa taatagcata aaattgattt agtgcttgtc ataaaacata
      181 agtaagtgct ggaaaataga gaaaattgag tctcaattta atctgcacaa aagccacact
      241 gtactgatga agtgatctga ggagagagct acataaaacc taaagacaga tacttaattg
      301 tcatattaaa gactctcttt tctgcctgct ggagtcaagg ggtaggaccc attaatcatg
      361 gggataaggg gcattgaaat caaatctcaa ttaaaatct
//
LOCUS       KCOD01002511             367 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 279630pyr ultra-conserved element
            locus uce-2897, sequence.
ACCESSION   KCOD01002511
VERSION     KCOD01002511.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 367)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 367)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..367
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="279630pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>367
                     /note="ultra-conserved element locus uce-2897"
BASE COUNT          129 a           65 c           65 g          108 t
ORIGIN      
        1 cagccaaaga caaccttctt taaataggtt atcactaaca agtcacagct ggagttactg
       61 caagcactga gtgaagactg tggggctaat aaaaagaaat gattcacgcc tcatttatgt
      121 tcacttatgt tttacattaa tagaaaccaa taataggaac cagttaccat aaaagtcatg
      181 gaccgtaaat aacacaaatg gcaaataagt atcatctagt acttttcaca gctggacagg
      241 aggattgcta tatttgaaag tagttaatgg atttttattg gaactttact ttttaaaggc
      301 acagcaccaa gctttggaga tctttttaaa ggtcccagta agcaaatatg catatttaca
      361 ctccttg
//
LOCUS       KCOD01002512             704 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 279732pyr ultra-conserved element
            locus uce-7511, sequence.
ACCESSION   KCOD01002512
VERSION     KCOD01002512.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 704)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 704)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..704
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="279732pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>704
                     /note="ultra-conserved element locus uce-7511"
BASE COUNT          237 a          155 c          143 g          169 t
ORIGIN      
        1 agcacaagtt gaaaactgca gacagatttc agaattactg gtgcctgacg tcactctttg
       61 aaattctcta gagctggaga cattggagac tcgtggtaag aaacacaacc caggagcaga
      121 gccatgaatg cctcctcttc tgtacaaatt tttctggtca agaggcaatg taggaacaaa
      181 ccagaaacat ttcagaacga aaagctgcca ctccttgtaa actaacctca cattctgggc
      241 aaaaccaatc cccctctggt tcggctgtca gtttcagaca cttagcatga taaacccgag
      301 gacagagttc acagcagagg acttggcctt cccgatgaca aacccagcaa tagaaatcat
      361 tccgtccatc ctgcggtaca acatcaacag ggtctgtggt gagtggctgc ttcatatagt
      421 aaaacggacc atgtcttagt tctgactgaa atgtaggcaa gaaaaacagg tttggtttca
      481 aaacaaattt gcaatatata agcaaacagc aatttacaga gtttgattaa catttaagca
      541 cagtatctta gtcattgcac attcataaag aagtttactg cttattcaga tgtcgaatga
      601 cactttgcac tcaagaccag aaataaatgt ggcaagtgag ggcattgagt gcaagacatg
      661 caatccaaca aaagccagca gacactttca gcttcaagaa agaa
//
LOCUS       KCOD01002513             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 279834pyr ultra-conserved element
            locus uce-242, sequence.
ACCESSION   KCOD01002513
VERSION     KCOD01002513.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="279834pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-242"
BASE COUNT          194 a           94 c          107 g          207 t
ORIGIN      
        1 taaaatgcta ttgtttcatc tgaggtgtga ggagatgtgc taaccttgtc aatgtgggtg
       61 cagtagagca gaaatgataa ctgtatatac tacaaaaata caggagagac aacttattta
      121 aatcctgaat acagtcagac ctcatatgca ttgttaaaaa aaagccctaa agaattgcat
      181 atggattagg gggatgaata ttctattatt tcagtctgtt ctgctgatct tcttattgtg
      241 actttgcgct tcagaaatct gccaggaatt tggctttgct gtactagaca gtaattttaa
      301 atgtgtatca agcacttgat agtgtatgat ttgcgtgctg ttgcattccc attccctaaa
      361 ttttccacca atttattact tttttcatac tgttttaata tttcaggatg atgaatatat
      421 acagcatcat taaaagtaaa taaaaaatgc atgaaattaa aaaatggaat attagatgtt
      481 tctttgctgt aatccctagg tccaatagga atgaaatgtc tctgttctgt caagtaatcc
      541 ctaaacatga ttagggacct tgtagtttcc acatagccca cataatattt gtatcatata
      601 ag
//
LOCUS       KCOD01002514             601 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 279936pyr ultra-conserved element
            locus uce-6438, sequence.
ACCESSION   KCOD01002514
VERSION     KCOD01002514.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 601)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="279936pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>601
                     /note="ultra-conserved element locus uce-6438"
BASE COUNT          148 a          126 c          168 g          159 t
ORIGIN      
        1 gctgtgggca gggaaaaacc ttaactacaa aagacagtgg gaaatctgaa gcttcagcca
       61 tgtgcaggat aatgtgaatg acggttccca ttccaggacc attgcttttc ctacacatca
      121 tctgaaagaa ttttatgtgc ccaaaggctg aaaggttggc aagggcagtt ggctaagtct
      181 gcacaaggtc agtgaggatg tctaataatt gtcctaacac tttacctgtt atggaacaat
      241 aatgagattt tttcattatt ttcgggtgag tgagcctggc agatgctgac agccagcaga
      301 tgtgtaaagt tcgaggtgat ttgtaaggga ccggctcatc tgacgcatgg taattgcatt
      361 gtgggacatt gtcactcagc cccgtgtcct gctccagcag aacgaggtaa aggtcagttc
      421 aaagagctgc cgaggctcag gggcagctca gggctgaaat taaacccctc acatccacct
      481 ctcacggcgt gccaggtggg tgccctgggt ggggattcag ggattttgga tctggagtgg
      541 gcttcctctt ctggtaatgt ggtagctcag tgctcatttg tccactttta ggggcttgga
      601 a
//
LOCUS       KCOD01002515             405 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 280043pyr ultra-conserved element
            locus uce-12, sequence.
ACCESSION   KCOD01002515
VERSION     KCOD01002515.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 405)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 405)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..405
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="280043pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>405
                     /note="ultra-conserved element locus uce-12"
BASE COUNT          123 a           80 c           79 g          123 t
ORIGIN      
        1 ttctttggga aacggaagga gaagctgcag tgtatcaaat tatttagaat catggttctt
       61 ttcacatacg atggaggctg tcataaagac aggaggctgc tgtgcagcaa gaaaagcaca
      121 ttagctatta accttccccc agccgatcaa ctttgttttg caatctttcc tcagaaccat
      181 tagaataccc tgaagaaata actttccaat taaaaaggat ctcagagaac aaagccattt
      241 tatctctgac tcctggtgtt ctttattcca ataatttaaa ttggaattga tttttcaatt
      301 tagccgttga cttgctatgg acacacagct gaaaaggccg aatggaattg catggctgaa
      361 atatttgtct ttgtgatgca ctcctcataa attcacggga gcctg
//
LOCUS       KCOD01002516             782 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 280149pyr ultra-conserved element
            locus uce-5476, sequence.
ACCESSION   KCOD01002516
VERSION     KCOD01002516.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 782)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 782)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..782
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="280149pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>782
                     /note="ultra-conserved element locus uce-5476"
BASE COUNT          293 a          125 c          158 g          206 t
ORIGIN      
        1 tttccctccc tcactcattt agattagttg tactctctgg tagacagata ttatattgct
       61 gcttaccaat aaattggaaa agtgaagagt tttctcaaat tttctctttt atgatagtaa
      121 acattggcac agcactaact tctaacagtt ccagaatgaa ttgtaaaata gcatggaaaa
      181 ctcaaaatat taattcttta tctcttcccc tctcccacca tccccgaagt atttttactt
      241 tgaaaaattt aatggtttag cagaatttga aagcagaagg tttaaaaaag tgataaaggg
      301 ggtgcagaaa ttagcagagg tggcactacc tgaaagctca tcagaaaggg gagtgagaac
      361 aatatcaggc aagaagggtt tggaagtatg gatcagaaca ggagcacttt tagcactgcg
      421 tatataggcc gatggcagag cacattcacc aatggatcgg cttctcatgg ctttaaaaag
      481 gaaaagaaag aagtggggaa ggaaaaaaga agagtgacta taatgaaagg cttgtgtcac
      541 agaaaaagca gcaacagaga aaacaaagat aaaaaggaag aaaattcaaa aattaaaacg
      601 tttcagcacg gcagatagag ctgtaagaaa gaaatcagtg gacacataag acattctgag
      661 ttttcaactt ttatgtaaag cagcaacaat gcctttatta tgacgattac agagattttg
      721 catttgaaat caataaggta attaacacat tttcctactg catcaggggt tgaaaaatca
      781 aa
//
LOCUS       KCOD01002517             453 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 280260pyr ultra-conserved element
            locus uce-1231, sequence.
ACCESSION   KCOD01002517
VERSION     KCOD01002517.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 453)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 453)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..453
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="280260pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>453
                     /note="ultra-conserved element locus uce-1231"
BASE COUNT          120 a           90 c          115 g          128 t
ORIGIN      
        1 gggggatgga agccagtctg gattgaggcc ccctggagct aaatctttca atcaccagag
       61 aagactgtca tttattaaat atttaacagc taggatggtg tttggatgcc agtaatttct
      121 attcaatctc ctcttccttt ggtagagccg ttccaataaa gaagatccag agcaactgcg
      181 gttaaagcag aaagcgaaag aggtaggact ttccagttac catgcttgcc tttgtgtgtt
      241 gagagaaggt tggcagccct gtcctggcaa ttaggtcagg gtttattttg ctgctgcata
      301 ccatttgcag aggccttggg gaaggacagg aactgccaca ggcaagggca gtgcttcaaa
      361 tgaggtcaat gaattatgag ctctcttttt ttaacacagt ttcagtcctg tctagaaaca
      421 gtcctttgta aactgcagca gtacacttgg tag
//
LOCUS       KCOD01002518             692 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 280372pyr ultra-conserved element
            locus uce-3323, sequence.
ACCESSION   KCOD01002518
VERSION     KCOD01002518.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 692)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 692)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..692
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="280372pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>692
                     /note="ultra-conserved element locus uce-3323"
BASE COUNT          194 a          159 c          121 g          218 t
ORIGIN      
        1 tcacgctttc taactaccat aatccacgct atctgggaaa tacttgaatc tctctaggtg
       61 taggctgttg tcctgaagca tttaccttcc agacactttt ctaaattttt tttcttgacg
      121 tctttttctt ctctcggtaa aacggctctt ggatttattt ctcacgcatc tctatcgcgc
      181 ctctgcctct gaaaagccac cactgggtaa ctgagacctg ctataccaaa ccactgctac
      241 tggagggact tccttgaact tgaagaaagg cacatcaaaa accaccagtg ttactgccat
      301 gtcaattttg atgctaataa tgtgcagatt atgacgaaaa ttgccaatca tgttctctga
      361 tggacctcct ttgaatgtgg aattggaaaa aagttccccg cacagagacc tgctgtcaag
      421 tactaacaac ccgctaaggg aagtcattag aagagacaga taagagactt ggtacataaa
      481 acattgttct tggtgcatag aatgtatgtt atttaatgtt atctctctta cctgaagtga
      541 tttcgcacaa gaaagccact ttcttatcat ctcaattgcc aattttcatt ttggtaactt
      601 ggacaccccg ggtagacttt tctctgttaa gttgatattc caccaatgtg aagagcctca
      661 ttaaatcaaa cccagatatt tccataatgc tc
//
LOCUS       KCOD01002519             761 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 280478pyr ultra-conserved element
            locus uce-2396, sequence.
ACCESSION   KCOD01002519
VERSION     KCOD01002519.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 761)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 761)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..761
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="280478pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>761
                     /note="ultra-conserved element locus uce-2396"
BASE COUNT          227 a          147 c          115 g          272 t
ORIGIN      
        1 tcacttcttt ccatctacac ttttttctgc agagtgaaat tcatacagtg ttttgtgttt
       61 gctataaata cacatctcat ctgtatttct atcctttatg tcaacattaa aattcccttg
      121 ttctatgttt agcttgaata attaccaaac catttgcaat tagaactcta agatatgacc
      181 tcatagtgat ttattccttc atttctttct gtatttaatg catttcagat actgaaaata
      241 ccaaatcttt gtccttttat tttgatgttt atcagtaatg gaaacattcc aaaacaatca
      301 gccaaatacc tatgctttgt tcatttattg ccttctctga agataaattg actgtactca
      361 actctcttca gcatttttct tcacctagat attattgcct tgtgcagcca ccccaaggtg
      421 actgttatca cttaattaaa tccttgcacg ctgggaagaa aaaacaacat tgttcgttca
      481 taaccccaag gaggtgtgtt ttttttcttt aagccactaa gctttttccc tgttttatta
      541 acttattcct ggctacagca agacatactt tgttgatgag caaaaggttg tattagcttt
      601 ttattttctg ggtaaactta tcttttctct gggaaaactg tgggcattac aacaaagaag
      661 aaaaatggga tctctccaaa ccctgcaatt ctagtaaagg tctgtgtaaa catcaagcca
      721 gtaaagagaa acaggggagt agcaggaagg aaatgagaaa a
//
LOCUS       KCOD01002520             818 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 280586pyr ultra-conserved element
            locus uce-3193, sequence.
ACCESSION   KCOD01002520
VERSION     KCOD01002520.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 818)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 818)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..818
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="280586pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>818
                     /note="ultra-conserved element locus uce-3193"
BASE COUNT          254 a          160 c          127 g          277 t
ORIGIN      
        1 atatagtgct ttaacgttaa attcttccct tcttcagggc atgaactgtc cttccttatt
       61 tgtacagtat ataagcagca cctccgtgat cctgactggg gtctcaacca actgtgcaaa
      121 tattagtact tgtaatatta taataggaga ccattatggt taatattggg ttatgccgag
      181 atatcccagg gggatacatc aaagatgaat gtgcacaggt aaattgtctt gtccttttgt
      241 agaatctaaa ggagaagacc acttcttgtc actcctaata tgaaagtaca ggcttagcct
      301 caaacatgta tttaaatcag aaacatacag tactatgaaa tgaaccatca ggccatccat
      361 gaatttgttt taacaatcca acaacatcac catttctcat tcatccactt agcttaattt
      421 tcctaccatc actttcattg ctgaggttgt ctctattaag ccattttttg tgcatcatta
      481 acttttaacc aggcatccat agctttattg tttaaattgc gtatgacttt atttaacgtc
      541 agcatttctt ctggctgctg acatgaagtc acattttata actaattaaa ttgatccctg
      601 ggaagcagaa gccactaaac ggaattattc gtatccaagt gtcaatatat taaatcaaag
      661 ggctaatgag ttgggtcact gcttctttta tctgaaagct actgcagaat agaattcgta
      721 ccaacctcta ctttctgctt taacagtcaa ttttatttta accaaaggta actaattaat
      781 aaattttgat ataactgtaa ataatacatt taagcctg
//
LOCUS       KCOD01002521             836 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 280700pyr ultra-conserved element
            locus uce-4207, sequence.
ACCESSION   KCOD01002521
VERSION     KCOD01002521.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 836)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 836)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..836
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="280700pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>836
                     /note="ultra-conserved element locus uce-4207"
BASE COUNT          215 a          188 c          220 g          213 t
ORIGIN      
        1 tcagacagct gcagagctgt gtgcagtgca ggactatgtg gattgctacc atcattaacc
       61 cattaatatt gcaggtattc cctgttgagt gcttctggaa attgtgctga aatgggagca
      121 cccaagttta ctttctcaca tctgtcgtat gctgcctcat cttaaactgc caaacatcaa
      181 tatcttctgc ggatcttaga ctgttacaca gctctataaa agtttagaga agaatgtgct
      241 gctgtgtaga tttcagactc ttaagcacgt tatgaataat actgtcttta tttctacagt
      301 gggagccaag aagacaggtt tgctcccggg tggaacaggg aatatcctcc ttcccttgat
      361 agtcttggtc aagaaagaca ctctggcaac ttctctggca gaaaatcact tccttttgat
      421 atccaggcac tctcaggcct cctcaatcct cagtttgcca acagagagga accttctttc
      481 agctatggag ctagagatgg accacgtagt gacttcagag gtggggaggg gcaccatgat
      541 ttcaggggca gggatttccc accatctgac ttccagggca gagacgagtc tcagatggat
      601 ttcagaggca gggagccacc cccttctgag tacaggggca gggatatgta ctctggagac
      661 ttccgggaga gagaagggcc ccctatggac ttcaggggtg gggatgttcc ttcaggggac
      721 ttcaggaaca gggacacgtt ccgcatgaac tacagggata gggaagcaca taatatggat
      781 tacaggggca gggacgaacc tccatcagac ttcaggggaa gggggtctta cgattt
//
LOCUS       KCOD01002522             586 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 280810pyr ultra-conserved element
            locus uce-4711, sequence.
ACCESSION   KCOD01002522
VERSION     KCOD01002522.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 586)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 586)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..586
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="280810pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>586
                     /note="ultra-conserved element locus uce-4711"
BASE COUNT          184 a          110 c          133 g          159 t
ORIGIN      
        1 tgataacaat tacaggtaat ttttcatttc aattggaaga gcagatataa aaaaggagag
       61 caagagaaac agaaagcgag tgagatttcc caagtgcctt attccctccc aggtctacaa
      121 cctaacagga gtgtagagag ctcggcagtt tcttcttatt ccattaagtg agatctaatt
      181 gtgtctcttc tgtctgttgg cagatgcggt ttctacataa caacagccca gagacagagc
      241 tgcctgatta atgcctccag ctgtcatatg ccccattatc tgtgcatttg cataacttaa
      301 tggtttagga caggggagag aggatgctta atttaatgtt tagcaggccc ttgatagctg
      361 aataatttaa gaactgtcaa gggaggtcag tcctacagcg attcagcaag acagccgtga
      421 tttctgaata tcattaaaat ccttacttag gataatttga gagcacggaa aaacaacaat
      481 gcttgagagg aggcctggct tttctgttaa ccattccttt cctgaagatt aggagaaaga
      541 cttgcggacc ccatcaaaat agcatggaaa gagagaaagg ggttaa
//
LOCUS       KCOD01002523             728 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 280921pyr ultra-conserved element
            locus uce-5930, sequence.
ACCESSION   KCOD01002523
VERSION     KCOD01002523.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 728)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 728)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..728
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="280921pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>728
                     /note="ultra-conserved element locus uce-5930"
BASE COUNT          220 a          135 c          118 g          255 t
ORIGIN      
        1 aaaatttcca ttcattttcc tgatttgcac tcagatgtat gaaggagtgg cagtatttac
       61 ccgacttgag aatatcacag cttaagttac tcagtaccaa aagctatctt ttccaagagc
      121 tgtttctaat accttctaaa attgatagca ttgttttcac attacttagg tgttaaaatt
      181 acatggtggt gttcctttaa aaaaaccaaa cctaatcctg ttaattcaaa gtgaataaca
      241 aacaggacta agactttttc ccaagttgtt acatttattc aacctgcttg tgttttgttc
      301 ttcatcataa ttatttccaa gtcaaatctg cgctgatttc cttgcggacc cacatacctc
      361 tgactaactt aaagaattga gctgggataa ttcacactat tccttggggg tcatgttctc
      421 tgtttttttt caaggacatt tttattacaa agctgatgaa atttgcatat taattcattt
      481 ctttcaattt tttaagatta aatgttgtca acatgtatca gtgcaaggct ctgacagtgc
      541 tgatgaaatg ggtcagtcaa gcttgaacat ttagagtaat gcagccatct gcaaccccca
      601 agccccttgt gtagtttagt gctaccattg caacttgatt aaaaaaaagt tttattcaat
      661 gcaggatatt aaaacattat cagtgaaatg atatgtgtta ctcctgccat ttgcagggaa
      721 agcatatt
//
LOCUS       KCOD01002524             671 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 281030pyr ultra-conserved element
            locus uce-17, sequence.
ACCESSION   KCOD01002524
VERSION     KCOD01002524.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 671)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 671)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..671
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="281030pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>671
                     /note="ultra-conserved element locus uce-17"
BASE COUNT          202 a          130 c          117 g          222 t
ORIGIN      
        1 gcggcaggga gctctagcag atttcacatc taattgtgaa gtttcttgat ctgctcaaaa
       61 atgttcctaa actacagagt acctttgaat tttcattgtt ggctgaacat gacaaaactc
      121 ttggtatcat accttactct cactcatctt gagcagatct tgttagtgca gattagatct
      181 tgttaaagat taattcttaa agcatcctca agctttcttt tccaacaaag gaaacatcaa
      241 ttataggctc acacataaac tttgccccta tcttgaatac ttgctgccct ttataaatct
      301 tagatttctt ccccttgtgt gtgttcaaag gagagatttt attgcctcca ggggttgtta
      361 aactgattgc aataccacgt atttagagca gttcagtggg aattaagctg gttcaatgct
      421 gtcagaccta gaatatagct gtcaaatagc attacaagta aaacaccctt gataagaaat
      481 aatgaccaaa tgtcaatctg ttttttacca gcagcactac agacgtagcc ttgccaatga
      541 aaaatgcaat attttgcaca ttatactagc tatgcttttg tgatgctaca aagggtgttt
      601 cagtgtagct taattttaga ttataggatt tgatcacaaa aatgtgtctt ggacctacct
      661 tcgattcaaa g
//
LOCUS       KCOD01002525             638 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 281143pyr ultra-conserved element
            locus uce-2701, sequence.
ACCESSION   KCOD01002525
VERSION     KCOD01002525.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 638)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 638)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..638
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="281143pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>638
                     /note="ultra-conserved element locus uce-2701"
BASE COUNT          140 a          152 c          180 g          166 t
ORIGIN      
        1 agaggaggcg gctgacagca aaagatatcg gtaagaggaa atttctcctg gagccttctg
       61 agggcttggt gctgccttgg ccctttcaca gtcctgcaag cagaaagctc tgctggcccg
      121 gcatttttgc aggttaattg tgttctgagc cctcgttctg gcattgccta cgggcaggtt
      181 ggtggcagac acagccacgt catcttaacc aggctttgct cttcacgggt ccaaaaagca
      241 gtatcaagtg tctctttttg aaactccagg agctggaagt atcatgtgtt tatgttacag
      301 gaactcctga agcctggaga gtgatgatgt ctctgaagtc agggctgctg gctgaaagta
      361 cgtgggcctt agataccata aacatcctgc tctatgatga caacagcata atgaccttca
      421 acctcagcca ggtgggtgca gatgctctct ggggcaggtc tttgaagtgc tagcgaggcg
      481 gcaacgagca gctcctgctg tacctggagc gtggggtgtg cgcagctgtg agcctggcct
      541 gaccctccct gggagggaga tacaaccttt gtcccttttc tcccatttat tgccagcatg
      601 ggaagaatgc cagcactggt taaaagttgt tttctgat
//
LOCUS       KCOD01002526             623 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 281251pyr ultra-conserved element
            locus uce-672, sequence.
ACCESSION   KCOD01002526
VERSION     KCOD01002526.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 623)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 623)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="281251pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>623
                     /note="ultra-conserved element locus uce-672"
BASE COUNT          154 a          132 c          116 g          221 t
ORIGIN      
        1 ataaatatat tgtgtgtgtt ttctgtatgt gtctctctgt tttttatata taaaaattgg
       61 tcagtctgtt aaactggatg tatttgtttt taatgaagtt tgccctgcct ttgtcatata
      121 ttcctctacc acaggatagc tacagctctc agggtatttc tcagccccca accccaggca
      181 acctgccagt cccttcccca atgtccccaa gctctgctag catctcctca tttcatggag
      241 atgaaagtga tagcattagc agcccaggct ggccaaagac tccatcaagc cctgtaagtg
      301 gctctggtta ttttggtttt tttgtaatta attatatttt aatgcttgct tgtttgtttt
      361 gtaaattcct tttctttatt atttatccac taaacagttt tctttcttta taacactggg
      421 tacaaattct gctctcggac acatgactgt aagttccact gcctggcttc agtggggcct
      481 gagcatgctt atccaagggc aaaatttgtc ccaacagtac tttgaaataa gaaagagtaa
      541 aattgtgtgc atcatgcaag tgtgctgtct ggtaaaacag cagttgttgt ggagaaaaca
      601 tccttcctgt aatgcatcag ctt
//
LOCUS       KCOD01002527             731 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 281362pyr ultra-conserved element
            locus uce-4528, sequence.
ACCESSION   KCOD01002527
VERSION     KCOD01002527.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 731)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 731)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..731
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="281362pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>731
                     /note="ultra-conserved element locus uce-4528"
BASE COUNT          209 a          160 c          168 g          194 t
ORIGIN      
        1 tgcctccaaa gatgcttgct gctgccacct agagctacct atgctggagc aggagctgcc
       61 tgacagcctt tgtgccacct cgagctggtt tccaaccagt aaggacagat agtgagggac
      121 gagcttgggg ctgctcagtg gaaacattac tctgtgcggt accttcccga catcatgaac
      181 acctcagccc ctggggaaaa tctgggttct atcagctctt ataagcaagt gtttcgaaag
      241 gtttacagaa aagtaaagta aacagagctc tgagtaacaa aagagccccg tttatgcatt
      301 ctttgattca ctgtaaagga tggtgtaaac tgacttttta accaagcatt aggcaagatt
      361 tgggcccccg ccattatata ataaacagtg acatggctat attaaaatat ttacttaatg
      421 cactgaagtg acttatagta tgagtggcta ctcaatagga tggcctaagt gttaaggcgt
      481 caggtgccat cgcctgtata aatattctgt gtgcacttgt ttataggaaa accccatctg
      541 gatttggcta aaacagcaga caccctgctg accccagttt ttgctattgg aaaatataac
      601 acaagtgttc actcatctag aataacagcg gtggttaagt gccatctgac agacagaagg
      661 gtattggctt ttctcaatag acagcaggct tggtgctgtg aacagcagca gctccccaag
      721 atttacagca t
//
LOCUS       KCOD01002528             353 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 281468pyr ultra-conserved element
            locus uce-6275, sequence.
ACCESSION   KCOD01002528
VERSION     KCOD01002528.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 353)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 353)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..353
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="281468pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>353
                     /note="ultra-conserved element locus uce-6275"
BASE COUNT          118 a           68 c           59 g          108 t
ORIGIN      
        1 aaataaatag aattgcttat aaaaaagtgt tcaaggaaaa ggctgtgttt gcctgaagca
       61 gaggccagat gctttgactt ccagctttct tccatcaaag ctgtgcagtt tcgaaattaa
      121 aatctgcagc aataatgaaa catattaaaa tgcatgcaaa gtcttgaggg cttataatat
      181 gctaaaaact ggcaatgcat gtttacatcc atatatcaac ttggatgtgc tgaaaagatt
      241 taaagtgtaa aatatgcaaa tatgtgtcat attgtcacac ttggtctccc taatggaact
      301 ccctttcatc tcaactctcc ttaatttcat gaatattgca tgcccctcac acc
//
LOCUS       KCOD01002529             666 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 281576pyr ultra-conserved element
            locus uce-308, sequence.
ACCESSION   KCOD01002529
VERSION     KCOD01002529.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 666)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 666)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..666
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="281576pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>666
                     /note="ultra-conserved element locus uce-308"
BASE COUNT          199 a          124 c          121 g          222 t
ORIGIN      
        1 tttgaataat ggcttatttt tttgtgcaag taataaagaa atctgtcttt ttcagtgata
       61 gtatattctt ctagtgaaat agaattcaat gaacagtagc ctctattcca gaccatttat
      121 aattctgcaa cagtgctggg tgcacatttg ctaaagtgtg accttgggca ggacctgtag
      181 tcacagtgca aagtaaaatg aagtattgcc actgcttcct ttctcctctt tggaagttaa
      241 aaatactgtg catggctttt ctacagtttt gcacatttga gttagctcct tacacagcgg
      301 atacccttaa taaaatgaca acagtaattt agttttgtca tttgaactgg cactggctac
      361 atggctcaaa aatacagtat tagagtagtt gaatgtgtgt cgggtctaat acttttttcc
      421 attttccaga gagctgcttt tccattagct ttgggaaaac acactggcag attcatttaa
      481 aatgagctca gctccaccct tcatataagt gacttagcct gtgcgataag aaattaagat
      541 caagggacat tatttcatta gcctgtcgtt ttgttatttg cattacaaag acagcattac
      601 aaaacacaac catatctgta atataactca tctcagggag ccttaagaca cttactgtag
      661 catatg
//
LOCUS       KCOD01002530             587 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 281680pyr ultra-conserved element
            locus uce-6576, sequence.
ACCESSION   KCOD01002530
VERSION     KCOD01002530.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 587)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 587)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..587
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="281680pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>587
                     /note="ultra-conserved element locus uce-6576"
BASE COUNT          162 a          127 c          124 g          174 t
ORIGIN      
        1 ggttccagga cctttgccca ccctcctccc aaaatctggg acacagcgat aggagctcag
       61 aagctgcagg aagggtttgg cagggctgat ccacagcatc ggggtcccag cactgacctg
      121 ctcatcgggg ggatcctggg aaggggagac ttctccacac atttgtggca tgtcaagcac
      181 agctcagttc tggtagcttc tcccaccttt gactaattgc tgacctgaca tctttctgat
      241 agtgaccttg tttcagctag taattcaaat atctttcagt gtcagaaata ataagtgcca
      301 cagtgagatg aacaagcaga gcttaagttg aacacagatt aatggggttt taatattcct
      361 aatttaatca ctcctttctg tctgaatgtg tgcaacatga tgtagcagct aattattttt
      421 ttaaccatga tgaggatctt tcctaatcat ttttatattt aacatgaatg aagggagggc
      481 agtgattaat gagggaataa atcttacgaa acagacacat gatcagttaa aaatacagct
      541 gtctgattat tttcttttcc ctttccctgt actgcaaata cttaccc
//
LOCUS       KCOD01002531             608 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 281785pyr ultra-conserved element
            locus uce-2245, sequence.
ACCESSION   KCOD01002531
VERSION     KCOD01002531.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 608)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 608)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..608
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="281785pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>608
                     /note="ultra-conserved element locus uce-2245"
BASE COUNT          179 a          147 c           93 g          189 t
ORIGIN      
        1 cgtaagccac acaaatagcc atatttgtta acattcatgt gactcttcgt ctgagctgta
       61 tttccttgag tacaccacaa tgaagagttt cttttaatag ggatcaacca aaaacaactg
      121 tgagggactt ttctctctcc ctccctccct ctctctctca ctccctctct cactctctct
      181 aaacctttta cactgcggtt gaacaagcct ctggataaag actttatcca aaaaccccct
      241 ctttaaagtt atttcaaatt tctctgcaag gctttcagaa atctgtttgt ttgagggcag
      301 aattagatgt gaccggcgtt ttattgtgac ataaaaccat atttcttccc tggaagatta
      361 aaaaataaaa tcggttaata agaaaagctg tcagcaacag aaaatggctg acataatccg
      421 tttatcctcc gagcaataaa gatattggtc cttgggagtc tatcctctct ctcatgttat
      481 ttcgcccaaa acattatctt cccagcattc tgatggatta agaagtcata tgggagatag
      541 cagggaaatg acagatacaa aaaaaaataa tatcctttca tttcccctcc tccctgcact
      601 ctctctct
//
LOCUS       KCOD01002532             765 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 281887pyr ultra-conserved element
            locus uce-4250, sequence.
ACCESSION   KCOD01002532
VERSION     KCOD01002532.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 765)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 765)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..765
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="281887pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>765
                     /note="ultra-conserved element locus uce-4250"
BASE COUNT          242 a          134 c          133 g          256 t
ORIGIN      
        1 tataggagca gcagtttatt cacattcact tttcatcata catatacatt aaatattaat
       61 aatactgtat gaatattcat ctctgtttaa tattcattta tacacagaag tttacagccg
      121 atccctttaa ctttgggtgc caaaaccagt gttcaaaggg ttgtgctgcc attgtttctg
      181 taaaacgttt acatttatct gctgtaaaag aggaagagtg tcgtgtttag ttttaaaatg
      241 ccacaaataa cagatttata gatttttcta aatacattat tttaccttga cagcattaat
      301 cattcatgct tccttctttc atttttctac ctgcaatgga ttattgaaac agaaaataac
      361 aacgggaaag gctacaagca gtatcaaaat gtcaagtttg tacttacagt tgtatgtgcg
      421 tagacagggt caagagcctc aattatttgt atatgtacac agtggtacta catgaaaggt
      481 tatgtcacct gcagctattt tcttgcagat ttaaatagga ctgatattca actccacagt
      541 cagccactga catggaacat agaattgtaa aatactatga actcttatgt caggacctaa
      601 aatatgaact gggtgattgc aaggtgtagc tgtgggcaat cctacgtatt gcagtgtaag
      661 tcctttaaat tactttgtgt tatccctgac ctgttctttt catttaagca taagccagac
      721 caacatggaa gtactttcca gggagaagaa aaacccttga tattg
//
LOCUS       KCOD01002533             398 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 281994pyr ultra-conserved element
            locus uce-2179, sequence.
ACCESSION   KCOD01002533
VERSION     KCOD01002533.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 398)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 398)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..398
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="281994pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>398
                     /note="ultra-conserved element locus uce-2179"
BASE COUNT          130 a           60 c           84 g          124 t
ORIGIN      
        1 ttttttaagg agccaaaact taggatcatg gactcttttg atttgctgac tcttgcagta
       61 tgcaagaagc tgtacctaag gacttgagct ctcttaagtt cgtgacttta aatcaattta
      121 gatggtgcct caaagcaaag agtcatgaaa ctggagtggg tccagagtga attaatctga
      181 aattaatttg attttgaaag gctccatctg gctgtgtttg gaaaaggcat ttagacagat
      241 atataaacaa atgatcatct gtattttata tgccagatgt ggcgtcaaaa aaatgaagaa
      301 atggaaaaaa aagaatcagc tgagggggat tttgctataa tgatgctcaa cttgttgaaa
      361 tcacaattgc atcacacttt ggacaatgat ctttcctt
//
LOCUS       KCOD01002534             719 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 282102pyr ultra-conserved element
            locus uce-7157, sequence.
ACCESSION   KCOD01002534
VERSION     KCOD01002534.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 719)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 719)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..719
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="282102pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>719
                     /note="ultra-conserved element locus uce-7157"
BASE COUNT          245 a          104 c          131 g          239 t
ORIGIN      
        1 agtaaattag gaagcaataa aaaaggccaa aggatgaaaa caaatttttt ccccaggagt
       61 acttcagtct gttttactac aactatttct taagggtatt aggcgcctat tcatagttag
      121 taaaagaaat agcatttttg ttttaattca ttgcttcttt aacaaatgct agctcccatc
      181 tctgcttctt taaatccaaa atctccacat tcaagcctaa gaagtattgt aaaggctgta
      241 aatcttgttt taatggaatg tacatttagc tatgaggaga taattgacgt tatggagggc
      301 ctagatgctg aattatatag gttatctaat acaaagggga ctcattaccg aagcactaca
      361 aacaagtagt aatatatgta tattgttctg agtggcgtta tagcaaaagt gttcaggtct
      421 gcagggattt ataaaacaca agaaaacagc agacatgcac ttgtaaattt gtctcatttg
      481 tctctgaagt taaaggttat tcccttgatc tgaatttgta ataaaaacat gctagactaa
      541 ggtttgtaga gaatgtttga atatgtaaat tgtgtataat gataggcaat tatagggtaa
      601 aaactggacc ttatgaatgt tacagaattg catggagcat caaagtattt tccttcagat
      661 gaaatattta tcttttatgc atgttataag cactttttca aaggtattca gcaacctat
//
LOCUS       KCOD01002535             708 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 282213pyr ultra-conserved element
            locus uce-2346, sequence.
ACCESSION   KCOD01002535
VERSION     KCOD01002535.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 708)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 708)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..708
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="282213pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>708
                     /note="ultra-conserved element locus uce-2346"
BASE COUNT          195 a          173 c          104 g          236 t
ORIGIN      
        1 aatattattg ctcattcata gtaccttgaa tttgctgtac ttaaaataga cacttgtacc
       61 aatggccttt ttattatcca aaaaatcaca tatacaccag ttctttctgc tagcaaaggg
      121 agggaatttg atccaacatg ggctgaaacc tgagtaggtc actgtacacc atgataaaat
      181 tccctaaccc ctgagccaaa tttccctgag ggggccctcc tacttctcct ttactttcca
      241 actgactttt ccattccctc tctcgtcttt tcctcccctt catctctttc atttccccta
      301 ccttaaagcc ttgatatctg atctgctgct gatactcaag ttacagtttt tacagcttag
      361 gctgtctatt gctgtataca ttcctttctt tctgctctgc cgtgattact taccagagct
      421 tattttacac tggtccagat gaaagcagtt cagatgaagg gaaacagtca gcctgtttga
      481 acattacaga tacaaaccta cacaagggca cattgtgctc cctctatcat ttcactgcaa
      541 acattttgca cactgtaacc aatttgttac attattgtat tctctgggtt tattaagaac
      601 aagtagactc ttaattcatc agtaaaaaag ggtaagtgat caccacagga ctttaacttt
      661 ctcaaaaatt caaactaccc ctttattttt aggtgatagc agccaact
//
LOCUS       KCOD01002536             598 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 282320pyr ultra-conserved element
            locus uce-2180, sequence.
ACCESSION   KCOD01002536
VERSION     KCOD01002536.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 598)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 598)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..598
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="282320pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>598
                     /note="ultra-conserved element locus uce-2180"
BASE COUNT          181 a           99 c          122 g          196 t
ORIGIN      
        1 tgacttgtga tcaaaatcta attagtctgt ttagtgagcc tagcatgttc cattgtgttt
       61 gctgaattat gaaattatat ctcagaaatg ctgcactcct gtagtatgcc ttatgaacac
      121 agtgctgctg tagtttgggt aaccgttctc gctagacttt gcttaaatat tttatgtttt
      181 gaatgaacaa ctcatacagg gttgagccaa gggcttaatc actcttaata caataaagca
      241 gcactttaaa atattattaa cctcatctgt ctagatttgg aactaataga ccattgtgtg
      301 tgtattgtct ttatccctgc cagttatgta catatttatt aatccactct tccagaggaa
      361 aaatttctaa aggaaaacca acagtaacct tcaagtgagc gggcacaggt tagaagggca
      421 ctaattaaat gtcagacttg acagattaaa attatgaaat ttaaaatcac cgtggagctc
      481 tttgtcattg tcaaattagg agtcagtgtg atgaggagca tggaagtgaa tggtttaatg
      541 gattgaatgg gaatgtggct tagcagcagc cttttcttga attcagatca gcctgtag
//
LOCUS       KCOD01002537             642 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 282429pyr ultra-conserved element
            locus uce-2119, sequence.
ACCESSION   KCOD01002537
VERSION     KCOD01002537.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 642)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 642)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..642
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="282429pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>642
                     /note="ultra-conserved element locus uce-2119"
BASE COUNT          160 a          140 c          151 g          191 t
ORIGIN      
        1 ttttcagaag ggataaaatc aatggcctga accagctgca tctttaaccc agttttgcct
       61 ctgtcagagg tgcgggctca gccacgtcgc tgcaggagca gccctttgct cccgacagaa
      121 ggggccgcag gcgccttccc aaaagcacat aactgcatcc ctgctgtacc tgtaacaatt
      181 taatcgtgtg agtcagccca gtcaagcatc cccagctcat gactgggaga catgaaattc
      241 attgtcatta ttgtccctgt cattttggat cattatatcc tgctgcagaa ttttcctcac
      301 tccagtgctt tcttacctcc aggaagcagg gattatggct gaggttgggg tgggggcagg
      361 actgtgaact acatttacct caggggagcc acagattaaa ttggctttgc tttctgactt
      421 gccagattcg tctgtttgta cgctctgggt ttaaggttgg aaatgatgaa tattccagtg
      481 aattcagggc ctctcttttt taatgcttgt ataagcaaag gatggggttt gtgtccctta
      541 agaagtgaat ggggaataat tcttcagatt gtgttaccaa aaagatttaa gattattcct
      601 gaacaaaatg acattatttg ttcattgtgg cacaaacatc tg
//
LOCUS       KCOD01002538             653 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 282538pyr ultra-conserved element
            locus uce-2842, sequence.
ACCESSION   KCOD01002538
VERSION     KCOD01002538.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 653)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 653)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="282538pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>653
                     /note="ultra-conserved element locus uce-2842"
BASE COUNT          199 a          112 c          139 g          203 t
ORIGIN      
        1 agttcctaga agtcctcctt gatgtacaaa ctgtgttttg aaaattaaca tcttgcttcc
       61 tgccagagac agtagatatg ccagctggta atagctggtt tctaatttgt gctagaagga
      121 aaaaaaagaa aaaaaatttg ctgactttag gtcttagcct atcagatgaa gacttgctgg
      181 tgcattagag gcctattcaa aacagggctt ttcttgcaac aggagcccct aacaattggt
      241 aatgaggaca gattccgaat tgtttgtgag cagctgctta gtaggtaaga gcttgtttgg
      301 attcaattga acagtgtttt tagaagcagt tactgacccc tgaccctttc tacagactgg
      361 gttgatggga ttagggaaag ctagcgttca gcttacactt ggctataaca agctggcaag
      421 agataacata ctttttaatt atcaagttac acctctgcca aagtttgtct gcgaatttac
      481 caaatgggtc aacaaactat aagaaatcaa gctaggctat gggataatag ttacataaga
      541 aagcagtctt ataattaata aatttatata gggttttatt ctctttgcaa atatttcata
      601 ttttcacgtg gctctcattg cagaggcatg tgttgcagcc agtgcagttt aag
//
LOCUS       KCOD01002539             639 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 282649pyr ultra-conserved element
            locus uce-5392, sequence.
ACCESSION   KCOD01002539
VERSION     KCOD01002539.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 639)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 639)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..639
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="282649pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>639
                     /note="ultra-conserved element locus uce-5392"
BASE COUNT          198 a          118 c          118 g          205 t
ORIGIN      
        1 gccacttctc tgctatagca cacataccct aaaccttaaa agaaaataaa agctgttatt
       61 tccaaatgaa aagatgtttc aagtattggg agacactgaa agaaattctg cagtttgaag
      121 atacttcaac ttaactacta attgcagggg accagtgggc gtaattttgg cactatatta
      181 gctttgccac tccatgaata atttgcatac aaaatgcttt attttggcaa tctattaaag
      241 agctatacag tatttgtggc ttatcgcatt cacgcaggaa gcaggatcct tggccatctc
      301 gttaaattct gttgatgcat aacaatttaa agcatggcac aagctggtat gacatttaaa
      361 gatgccttca cttaattata ttacacaaat attgggttgt ttatccttgg gaataaagtc
      421 tttttgaagt caaagttggc atgcgtataa aggagtaaat tttaactgat ccctcaagtg
      481 ggcctcctag ctgcaaattg gggttcttgc attttttaaa ttatttgtga taagaagcat
      541 tacactttga atacagccac tggagtttgt ttggtactcc ctcccttctt ctcctctaat
      601 ggaaaataca gtctgtagca gtaaatcggc acatgaaac
//
LOCUS       KCOD01002540             478 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 282756pyr ultra-conserved element
            locus uce-4147, sequence.
ACCESSION   KCOD01002540
VERSION     KCOD01002540.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 478)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 478)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..478
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="282756pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>478
                     /note="ultra-conserved element locus uce-4147"
BASE COUNT          153 a           99 c           90 g          136 t
ORIGIN      
        1 taattaaaac tcaaggagaa aaacctccat cgggaacagg tagacacctc tgactctaat
       61 ttatgtgagt ttaaaagtag taccaagatt ggtttaatta cctgggaaca atgtatgtct
      121 cctgtattgc agatcagctc gttagttcca cttccagttg aaattgataa tacatccctc
      181 actcaaaaca ttgtctccca atcaccatgg ttactgccag gtttttccac aaggaccaag
      241 catattcatc tgtcaagtat gctaatggag aacggaccct gtcacacaaa ggagcaggct
      301 attcaaacat acacttgcca aataattgta catgtcaaaa gaatgatgct tgttatttgc
      361 ttaatattat cccccagaag tgggaaatag ttcagctctc aatgcaaaat ggcttgccct
      421 catcaaatag gcaatttgct gataatttag actattagag atcttggggt ggggagac
//
LOCUS       KCOD01002541             299 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 282861pyr ultra-conserved element
            locus uce-6372, sequence.
ACCESSION   KCOD01002541
VERSION     KCOD01002541.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 299)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 299)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..299
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="282861pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>299
                     /note="ultra-conserved element locus uce-6372"
BASE COUNT           78 a           75 c           70 g           76 t
ORIGIN      
        1 tggctgctgg ccccgtgagc tgccacctgt tgtgaatcta cccccggcta atccattctg
       61 gactgcgtca gcagttcaaa agggcactgt tagtattttt tgccagcttc aattaacgtg
      121 agattttgga ggcccctctg atcacatttc atctgtcatg agtcaggaac aaaccagcca
      181 gattgcagtt gagaggagag aagagaagga gtttattgca aaccaaaaca acaacagtgt
      241 ttgtgggacc ttcccagtga tgccactcct ttcaaaaccg tgactggaaa ttccagccc
//
LOCUS       KCOD01002542             407 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 282969pyr ultra-conserved element
            locus uce-3933, sequence.
ACCESSION   KCOD01002542
VERSION     KCOD01002542.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 407)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 407)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..407
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="282969pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>407
                     /note="ultra-conserved element locus uce-3933"
BASE COUNT          141 a           76 c           61 g          129 t
ORIGIN      
        1 cccacaaggg ccagaactac taaggaatta atttgttaca accaccgttg ttccatctta
       61 ctacgtgggc atattctgaa acaaatattc agagaaatac acttcttcaa ttgatgcaac
      121 tcagtaattt ttattgcaac tggaagacaa tacatcacag aaactttatg gtaggttttg
      181 ggaaagtgtt atttacaata ataattgatg aaatagtttg tctttggcaa tatgattaca
      241 catcaagaaa atgtaaaatg caagtatgcc tctaaatcaa caatttcata tttcctaaag
      301 atcagctgat tgcacttgcc ttcggactgc tcatttaggt aaacacaaat acaacttaac
      361 atcactgttc attccccgtc acagttcgta ttttaatatt gatgaaa
//
LOCUS       KCOD01002543             641 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 283076pyr ultra-conserved element
            locus uce-7487, sequence.
ACCESSION   KCOD01002543
VERSION     KCOD01002543.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 641)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 641)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..641
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="283076pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>641
                     /note="ultra-conserved element locus uce-7487"
BASE COUNT          184 a          152 c          112 g          193 t
ORIGIN      
        1 ttttcagctg agactcagca ataattagta ccttttattg tccttactga cctctcactt
       61 agtaaacaat ctttcttaat gtggttcagt acactaatct ctcccaggtt tttgctttct
      121 cagttcccct gcaccatggt ctgacctgca ggcaaatgaa gccattcaaa tatttgctta
      181 tcttgtcatc tgttctcatc agaccttgca attcctgtca tgccccacat gtcagtttaa
      241 agcataacgt cattaatacc tccagtgcac taatggatgc ttcacacatg aacgcattaa
      301 tgaaatgtgt tattgttttc cctcacagga cattaacaat ctcgctcacg ctgagcccct
      361 gaagccctgc agtgctgctg aaaaccacta gctatcaaat gaaccctcag ttacgcctca
      421 gtaactttaa gttcaagttt atcactgaag tgtcactaat gtgaggagaa gatacaagcc
      481 tctaaggtct tttgggccca gcttcaatta ccttaaagag taacaggagg caatagctgc
      541 aagggaaaaa tacaccatca tataaatgaa atgctgtcaa gacaaaatag gaaagatctg
      601 ggtgtcaaca tggtaacttg tttctaccct ttgtctgtgg a
//
LOCUS       KCOD01002544             727 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 283188pyr ultra-conserved element
            locus uce-6932, sequence.
ACCESSION   KCOD01002544
VERSION     KCOD01002544.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 727)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 727)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..727
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="283188pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>727
                     /note="ultra-conserved element locus uce-6932"
BASE COUNT          202 a          222 c          158 g          145 t
ORIGIN      
        1 aatgtacaga ggccctcccc tgcctacctc agcaacatga actccataat cctattaaac
       61 gccctgtctc tgggagccat ccccatccaa gtcctgagag cacacctgaa atgcacagct
      121 gccctctgac acagtctgtc ctcaccccag ttagcccctc tgccctctgg cccaaggaca
      181 gagaaaagaa gtaatagcac tggtgccaga agtcagcagg aagcaagctc cccccctttc
      241 tctttctctc tctttctctt tcatccttca ggacacaaac ctgcaagtgc gctcgtttaa
      301 ctcaagctgc ctcgacttgc aacgtgagtc tgtgaatttg caggaacatt tacaggtctg
      361 gggatcttgt acaaacaagt gctttctcct ctctgagcaa ggctcacagt gactgcaaaa
      421 aggcaaaagg aaagatgtct aagctacagc gcttcagcag aaagaaaata cacatgcaac
      481 accctaaaca tcaaagcaat ccccttgccc cctcccgcag cccccaagct gcccactgga
      541 gtgtcacagg ctgatggatt ttccagcagc accccgacag ccccaggaca gcaacccctt
      601 gcattagcgt agagaaagaa aacaggcctt ctgcacagta ttcacaaatg ctgcattgga
      661 tccatcggct caggccagag ggaggaagaa ggggaaagca aggatgggaa ggtgagaggt
      721 cccagcc
//
LOCUS       KCOD01002545             435 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 283295pyr ultra-conserved element
            locus uce-3551, sequence.
ACCESSION   KCOD01002545
VERSION     KCOD01002545.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 435)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 435)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..435
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="283295pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>435
                     /note="ultra-conserved element locus uce-3551"
BASE COUNT          124 a           75 c           97 g          139 t
ORIGIN      
        1 gcaccctgct ggtgacagga gcagttgtgc ctttgcagca ggggtctggt ccctgttggc
       61 caggcagggc ctggcggagc agtttgaggc tgtttgactg tccctgtcat cataaggttt
      121 acggatggtt aatttattct ttatagcaca gtcattgatg gctgttaaat cacaaatgag
      181 agccaataaa gggtgaattg cagctgaaat tacactgttt atatgacagc agagtgctgg
      241 ctaaaagatt catatgccgc tgatgaagta cgttataaat tttaattacc atagtttgta
      301 caaatgacat gtttgaaatg ctattgagta atgtgaccct gataatgaaa ctataaaata
      361 aatcattaac tttctgaatg agctttttta tttccatgct acatgaagta aactttccaa
      421 tttattccat tgcag
//
LOCUS       KCOD01002546             509 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 283507pyr ultra-conserved element
            locus uce-5409, sequence.
ACCESSION   KCOD01002546
VERSION     KCOD01002546.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 509)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 509)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..509
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="283507pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>509
                     /note="ultra-conserved element locus uce-5409"
BASE COUNT          161 a           96 c          101 g          151 t
ORIGIN      
        1 ggccaaatga cctgtggaac acagtgagtc aagcagaatt ttgtctcctg ctgcatactt
       61 gcaatgccaa agcacagctc cgctaaatat aaagatttcc catagccaag catgctccaa
      121 gagtaatttg cttctttgtc aaaacccttt tgccaggttt aaaactgaga agagtaaatt
      181 ttccagagaa taactacaag tattcttaaa atcttgcaag aagtgtgtgc atataataac
      241 atttccacca ttgataacta attattttgc ttgcagagtg cctgtaaaga tgacgacaaa
      301 agcaccaaca tttacacagc cattacaaag tgttgtggca ctggagggta gtgccgcaac
      361 ctttgaggct catattagtg gtaagatttt ggttcactct tccaagattt ttttctaatg
      421 atgatgacac ttttcataga tctgatatga atgggtaaaa tgagttctga atcagcactg
      481 tgagagggaa cttcacattt ggatgatga
//
LOCUS       KCOD01002547             358 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 283613pyr ultra-conserved element
            locus uce-7251, sequence.
ACCESSION   KCOD01002547
VERSION     KCOD01002547.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 358)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 358)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..358
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="283613pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>358
                     /note="ultra-conserved element locus uce-7251"
BASE COUNT          103 a           73 c           53 g          129 t
ORIGIN      
        1 cattttgcca gcagttgcat caattgtcat ttaactgccc taaataatgt gttctcttcc
       61 ctgctgtatt aaactatttc tatcaaggct aatgattttc tgatttccac atgccagtga
      121 gcttggcagt aacaaatgat gtctctcttt tgcatgttgc aagtagctta aattatattt
      181 tacataccca tttaaaggat cattagttaa gttaatatcc ttgctattca ggaggatcaa
      241 gcattttagt aaaggatagt ctcactatac atcctctgct cgatctgagt acatttttaa
      301 cagccttggc ttgttaaact cacactcact acatatggat aaaaccctag atatctat
//
LOCUS       KCOD01002548             621 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 283717pyr ultra-conserved element
            locus uce-4232, sequence.
ACCESSION   KCOD01002548
VERSION     KCOD01002548.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 621)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 621)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..621
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="283717pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>621
                     /note="ultra-conserved element locus uce-4232"
BASE COUNT          196 a          117 c          111 g          197 t
ORIGIN      
        1 taagcaggtt ttggatcagc actggtgaag ccggtttagt gtgaaatttc ccccttctaa
       61 ggctgcatgt tttaatttaa gtaggtttga gcaaagcctg tagtgctatg tgtctttttg
      121 cctggacctc atccttaaca gagacatgaa aacaccagtg cttgatctgc tcctttgagc
      181 tgcacccttt tagtggacat gaagaaaata agaccagaca taaatgatta atgcagaatc
      241 ttggaagaaa atattgcagg gtgccttgct gtttgattac aagccttgga attagtcaac
      301 atttccataa ttctaaacca atatacacct gttttcccac tgtgatgtga aggcacaact
      361 taatttaaca gaaaccccgc tgtgctaaat ctctcattaa ataccaagct agttctgtaa
      421 tttaaagttg cagcactact attttaactg aattgccttt gtattataaa attaataaga
      481 agttaatgat gcactttgct gtattctctc agattttttt ttcacagcaa caacaacgaa
      541 agataaagaa ggaaaacatg tcaccagctg acatctcaag gcttttaatc attttcctga
      601 ggatagaaat tcatttaaaa g
//
LOCUS       KCOD01002549             539 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 283830pyr ultra-conserved element
            locus uce-2531, sequence.
ACCESSION   KCOD01002549
VERSION     KCOD01002549.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 539)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 539)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..539
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="283830pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>539
                     /note="ultra-conserved element locus uce-2531"
BASE COUNT          163 a           85 c          100 g          191 t
ORIGIN      
        1 accagcaaac cttttttaat tgcacattct atttgcccct gttccatgca ttcaacctgc
       61 agagaagaaa gacatttaaa gattaccaag gcaagtttgt aatgaagcgg atgcctcttt
      121 gtctgtcctt gcgccaacag cagcagaagg gatactaatt agagggtgaa ttattagctt
      181 cccatggtgc actgcagggg cattaaaaat gagtgtagtt tgttgctttc cttttagacg
      241 gttagtactg gtttaatata ttcttgtttc taggtgagca gcaggggaca gtttttatta
      301 ttataattgt tgcataatta ctggcctaag gttgcctatt gttaaataaa aatgctgaga
      361 tactaatgtt ttattgaaca gtacaagtag ataaaattgt aatatatttc cctgaacaat
      421 ataagcttgt tatctggtga caactctaag ttgtcttgtg gacaaagact cttttttttg
      481 taaagactaa atattaaaac ttgaaattca ttcaataagt tttattttca tttattcca
//
LOCUS       KCOD01002550             584 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 283935pyr ultra-conserved element
            locus uce-902, sequence.
ACCESSION   KCOD01002550
VERSION     KCOD01002550.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 584)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="283935pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>584
                     /note="ultra-conserved element locus uce-902"
BASE COUNT          170 a          127 c          105 g          182 t
ORIGIN      
        1 aacttctgat gagtttctct cctcctcaga actgggagca ggaaaagaac tttataaaat
       61 tctccacaac cagtcgagcg gaacctattt tctctcacaa tgcaattaac ggcaccaaca
      121 tttacaaaat atgattacaa gcactttggt taagtagagg aaagtatatt agatagcagc
      181 gaggggttga tcttaatgtg cattttttcg agagacttgc attttctttg tgcaaataaa
      241 gaggccctaa attctccata ggcactaaaa tcaatgcagt ggaaccatga taacaaacac
      301 aggctccact ttttgctaca tcccccaatt aattaagcct ttcacgggca tgtaattagg
      361 aacattagca agtcataaaa ttgccgtgag tctctaaatt atgtgctggc cctcagcaat
      421 ttgtttttaa ttccttttga agacaatggc actgcggggt cccatagatc ttcatagcag
      481 cctactgttt acttctttat ggctctatga agatctaact gttttctact gctcccagat
      541 gcacccgcac tattttcttg tgcgttttca ttacctgagt taga
//
LOCUS       KCOD01002551             481 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 284043pyr ultra-conserved element
            locus uce-2486, sequence.
ACCESSION   KCOD01002551
VERSION     KCOD01002551.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 481)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 481)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..481
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="284043pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>481
                     /note="ultra-conserved element locus uce-2486"
BASE COUNT          183 a           77 c           79 g          142 t
ORIGIN      
        1 aggacaaagc ttttgccaac attatatttt ttgaataatt taatgaaact aagagaaaga
       61 agcataatct gaaaattaat aaatgacctc aatgtcagtc tccaaatgtc tggatttaga
      121 ctaatttgta aagcaaacaa gggaaaagtt ttaaaaatcc tggaaacata aactgaagct
      181 gaggcctttc acaagatcaa gacaagatag atgacaacct gtaacggtgt atcttagggc
      241 tccatgactt cagtttggaa ttcggatgct tgtatttgca gtaaattaaa caaagctgaa
      301 cccatctaga gaaaaaacac agcaaatcaa attaccttct ttttgcctaa gtattataaa
      361 tgatggagcc tctttctgtt gcatcatgca gagatttcaa attatgtaac atctaaatca
      421 tcataaattg ttacaattga aaactcagta atatgaacag agatcaaatt actgtgctgt
      481 t
//
LOCUS       KCOD01002552             568 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 284154pyr ultra-conserved element
            locus uce-6896, sequence.
ACCESSION   KCOD01002552
VERSION     KCOD01002552.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 568)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 568)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="284154pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>568
                     /note="ultra-conserved element locus uce-6896"
BASE COUNT          161 a          107 c           88 g          212 t
ORIGIN      
        1 tgttagtatt tcactgttct taaccaaagt tattcagaaa atctgaaagt ctaattttat
       61 gaggcctttc tttctttgcc ataaggactt atgacataga atgaacaaga aagctttaag
      121 tgttactttc acatactctt tctccagatt gctatatgaa gctgtacata atataaacac
      181 atattcttgt ctctagttag tcacattata gttaatgacc atatggtcat tatggtataa
      241 gatctactgt ctgttgtatt tatattcctc aagcatattg ttccttcaac ttcacagtgt
      301 gttaaactat ttcaaaggga atcctttccc tcttgtttct ggttgtccta tcaagtgtaa
      361 ccttggaccc ttatagagca attagaccag cctctatccc ctcctttgta atgaggtttc
      421 ttgcatttct gagtctataa ccctttagtc ttccctaatg ggacatcatt attctgaaag
      481 aaacaatgta aatgtaaatg aatattctca ttaacgagtc acagagaaac ctttagtggt
      541 agcgctgtgg taattctgct tgttattt
//
LOCUS       KCOD01002553             665 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 284260pyr ultra-conserved element
            locus uce-3072, sequence.
ACCESSION   KCOD01002553
VERSION     KCOD01002553.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 665)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 665)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="284260pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>665
                     /note="ultra-conserved element locus uce-3072"
BASE COUNT          233 a          128 c          125 g          179 t
ORIGIN      
        1 tggcgaacaa cccatttaag tcaaacagct atcatgtaaa agtgaagatg agcaacaaag
       61 cacatccaag ggaagcaagt taagatctag gccctgaggt tcgaaggggc taaagaaacc
      121 gagccaaaga aattctaaaa aggcactttt ttagcttaaa aaaataagat tagaaactgg
      181 cttgtatgag cccaactgtg attaaaaaaa taaacctttt atagtttctt tttgttcttt
      241 gacttttcct tgcagagaaa gaggctatct tcacttaatc agagcaaaga aagagtggct
      301 gaggcagaag cagcatcatg tgggtgaagg tcaggccaat tttcacccat gtgatgctgc
      361 tttatcactc atggaacaaa gattaaggcc tttcttttct ttatcctttt gtgctttccc
      421 ccattacttt aacagatctg aacaaatccc aggcagttca tccaaaagtt ccttttagct
      481 acatttagtt cagatcctct aaattccaca taagacttca tgctatacca acatgaagag
      541 gatataaaac ccatatgtgt agggagaaaa atgttataga aaaacacaga aatcattgca
      601 gaatatgatg acagcaaagg ccttttcagt tgcaagaaac taggcacatc ccggaatcag
      661 aatta
//
LOCUS       KCOD01002554             532 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 284370pyr ultra-conserved element
            locus uce-991, sequence.
ACCESSION   KCOD01002554
VERSION     KCOD01002554.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 532)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 532)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="284370pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>532
                     /note="ultra-conserved element locus uce-991"
BASE COUNT          163 a          101 c          100 g          168 t
ORIGIN      
        1 ttcagtcctc taatgagact gtgcatgagc acttgcagct ttgtaggcct tgttttaatc
       61 agagattgag aaacactcct gactgatagt tttcaggacc agatccagac agaaaataac
      121 atcctcaatt tggcctctga aggtgggttg agcaaatctt tgtgatgtat tggagtattt
      181 gctgagtgca agcacacgtg gtgtggttcc tatttctgtc ggcaaataaa aatttttcac
      241 tcagcaggaa taatcagagc taacttgaga ggagaaatca caaaagctca acagccctta
      301 gcaactcagc atggcataga gggatttaag actttagcat tttatctcta tcagtatgaa
      361 aatgtatgag gaaatctgaa cgcaaataaa cacttttaac accttataaa ccacctattc
      421 tatcaatgac tcttgggttt tttccttttc tagcctccct ctcctgaaat aataaaactg
      481 gttcattaat ttggatttaa ctaaaatcaa tttggtttga cagagttact tt
//
LOCUS       KCOD01002555             845 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 284479pyr ultra-conserved element
            locus uce-725, sequence.
ACCESSION   KCOD01002555
VERSION     KCOD01002555.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 845)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 845)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..845
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="284479pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>845
                     /note="ultra-conserved element locus uce-725"
BASE COUNT          182 a          221 c          181 g          261 t
ORIGIN      
        1 cgcttctgct ctttcctcgc tgaaaccagc tgctggaaac tctgctgctg ctgttgtggc
       61 agcttttgct tgcgtttgtt ttctctgtaa ctttctcggg gactgacgga ctgcggagct
      121 atttctcttt cattctcatt gccccttaat gccacgctgg gggaatggct catacctcga
      181 attatattct caacccgggc gcgtttagct ctcaggtgct cgtcacataa ccgatccaca
      241 tcaaactggc tcatagttgg cctgccaaaa ggggaaagac actcttgggg gctgtctctt
      301 gaagagttgc tgcatacatc ctcctgatgt acttctgagc ctgtactaga gagaccgctg
      361 gcttggaaac tgggctctgt gccaccattt ttgttcatgt tatttttcaa cagctgggaa
      421 attatggttg ctcctggaaa aggcatcatg gcatcttcat acgagttcgc cctcttcagc
      481 agcttgcgga gtacatttga cttttcccca tctgcatgct gcaccactga atactcaaca
      541 tcttgctctg aaccttgggg attcatggca ctaaaaaacg ttgctcttgc ctttgcaaaa
      601 aatgcagatg ctgtccctac cgtccttttc actccaatgt caactcttct tctcttggtt
      661 tgcctgctta agagggctgt gctgtcatgg tcaggcatca ctggactgtt attgtgccat
      721 cttcaaaagc ttgtcagctg ggctcagctc aagaatcctg ggaccctggc caacagaaca
      781 aaaggactga tgaatcattt tctttaaatt tctccaaatt tcctgacctc aatcctgaat
      841 aaaat
//
LOCUS       KCOD01002556             659 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 284588pyr ultra-conserved element
            locus uce-7348, sequence.
ACCESSION   KCOD01002556
VERSION     KCOD01002556.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 659)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 659)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..659
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="284588pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>659
                     /note="ultra-conserved element locus uce-7348"
BASE COUNT          154 a          137 c          136 g          232 t
ORIGIN      
        1 tggcagatgt gcactgctgg gccaggagag gtgaaattca ggaggtaaag ccaggacctc
       61 ctttgatttc cactgacagt gggtctaagc ccaggctctc cccgacgact gaccatgcat
      121 tcatttgtag actcagtttg ttctccctgg tggaaactgg cacttttccc actgtcttgc
      181 tcttttattg gctctggtgg ctgacctcag ttttgacttt tgttaatttt tctttagtac
      241 attcaactgg actgtcccat tcctgagctg gctggcaatt gttgccctct cggtgttcac
      301 catcatcctg tatttcattc cactgagata cattgtcctt gtctggggta agtaaagctc
      361 ttttaaactg tctttttaat ggatgactta ccctgttttt ggtatttatg gtcatgaagc
      421 taccccgtga tggaaatagg caggttagtt aaaaaatatt taggcccacc tgcaaaatgc
      481 atttttcttg gctggcattc tagacttaat catactataa acatgtagcc atgaggattc
      541 ttcatatatc aaagtgtagc tttgtctaga tttattttca ccacttaaat agaggcattt
      601 caatctatat agtgcattta ggacaatatg ttttttactg cggtatcttg tgaaagtat
//
LOCUS       KCOD01002557             675 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 284699pyr ultra-conserved element
            locus uce-5661, sequence.
ACCESSION   KCOD01002557
VERSION     KCOD01002557.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 675)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 675)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..675
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="284699pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>675
                     /note="ultra-conserved element locus uce-5661"
BASE COUNT          213 a          154 c          112 g          196 t
ORIGIN      
        1 attcatctcc tgaaactaaa agccaagctc ataaagcaca aacccacaca agctaaaacc
       61 aatcagtagc ttccccgaat ccctgcaaag ccaaaccatt cagtgccacg ctgctctgcc
      121 aataatagta acaagtaaca ctacactcgg gctgtaattt ttcatatcca ctgtgctgtt
      181 gtcatatgat ttactgtgct agcactgaga gccattgccc aagccctgtc tctgcactcc
      241 tcctgattta cttaaatctt tttacttcta tcagccacag ggaatgggga cactttaaca
      301 actgacaatt tgaacagaaa atacagagaa aagctgtgta aagcaagtgg ctgagattat
      361 agctgttgac ttctaatatt atttgacaga tgagactgct gcaattatcc tctgctcatg
      421 ggttccatta ctggaacaag aagctcacaa aataagggca atttcccaaa caatatatag
      481 gtccacttaa ctttgtcaag agccatttct gcaagtgaag tcctccctgg ttaaagatac
      541 aaggataatg tgttggcaac ttcacatgaa catttagtgc attccacatt aactgcattt
      601 tcagttgttc ttttcctgct ctgtttgaac caaataggat attatttcta aggacatttg
      661 tttaaagaat aacat
//
LOCUS       KCOD01002558             234 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 284803pyr ultra-conserved element
            locus uce-873, sequence.
ACCESSION   KCOD01002558
VERSION     KCOD01002558.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 234)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 234)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..234
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="284803pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>234
                     /note="ultra-conserved element locus uce-873"
BASE COUNT           77 a           43 c           40 g           74 t
ORIGIN      
        1 gagccacctt ttctaagaga gaaatacacc acaatctgga aatcctatta ataacattag
       61 agccctgaac tttaatgtat taatgaatgg acgtgcaccc atgctgtaat catggatttc
      121 agcattgcct ttgatgcttc attggtcaca aagctcttac aaaatgtttg aagtgtctgg
      181 ctgtgtaata atgatttata attctcttga accaaagcaa aatttgctag taaa
//
LOCUS       KCOD01002559             764 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 284907pyr ultra-conserved element
            locus uce-6121, sequence.
ACCESSION   KCOD01002559
VERSION     KCOD01002559.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 764)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 764)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..764
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="284907pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>764
                     /note="ultra-conserved element locus uce-6121"
BASE COUNT          254 a          127 c          137 g          246 t
ORIGIN      
        1 tagctacatt gtagtaagca aacagtaaag tcttaaatga tcaatacttg acaagagaca
       61 tgtcacaaac ttcatgtata ggtcaggcac acacaaagtt tttaaataaa tcgactgact
      121 tctggacaag gcacataaaa tgtcactttt tatctctcag ttgatatttt tctcacagag
      181 caaaaaatca ccacctcaga gatttgatcg aaaagatagt cactcttgat acaggtttaa
      241 aatcaagagg aaatttttgt cactacctta atctctgatt tgtagaaggt tgtgctttgg
      301 gatatttggt atgtctgaga attgccacca aagagccctt ctgttcttta atcgctgcac
      361 taaatcttaa caaacgtgag catgaaaact attgtgctgt acttgtgagg catatatcaa
      421 agttatattt ttaaagcttg gaaaggcagt tgaatcatgc atgctcttta cggagctctg
      481 atcaggctga taaaggcagt tcagcttcaa taaacgcttt ttaagtgaat gttttggaaa
      541 gtgaatagga aattcaaagc tcaaactgtt gcctaactgc tcccacagca ctttgatcac
      601 ttcgctgctg acattttgtt aaaaatgtct tgtttttatt aaaatgttgg gatctgggga
      661 tttagaaagt taagtgtagt cactgaaaaa ataatataca gtaaaactga gtgacataac
      721 ttattatgta ctttgcacac atttcttaaa aaagaaaact tttt
//
LOCUS       KCOD01002560             680 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 285020pyr ultra-conserved element
            locus uce-431, sequence.
ACCESSION   KCOD01002560
VERSION     KCOD01002560.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 680)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 680)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..680
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="285020pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>680
                     /note="ultra-conserved element locus uce-431"
BASE COUNT          167 a          130 c          148 g          235 t
ORIGIN      
        1 tttgccactc tccagtttaa actaccattt ttcttagtag tgaactcata aaatccctga
       61 ggatagcttg tagccctgtt acatctgtgt taacaaaact aaatactaaa tcttgaattt
      121 gagggtgttt actgcactgc ctaaaacttg cattatttcc atgtctaaca cacttttctt
      181 ttctctttca gtcttggtct ttgtaatggg caaagaaggg gtccatggag gcggattgaa
      241 taagaaggca tactcaatgg caaaatactt gagagactct gggttctagt tgttaggcag
      301 actgttaagt attaggggaa gattgctatt aaactttcct ggcggtgagc tttaaacctt
      361 acattctgga aactttacta gcaatgcagg gtgatggggt atgaacctgt gtctcctttg
      421 tatccctttg ttggtgggga aaggtgtttt ttttttttcc ctttaattct tttcatttct
      481 gttttgtttc cttgtgtact ccagcattgg ttatagtcat gggaaaggaa ggtgtccatg
      541 gagggacact caacaagaaa gcatatgaac tggctttata cctgaggagg tctgatgtct
      601 gagcagcctc tccccatagc tgtctgcacc acttttgctc agtgctacca gaccgtagat
      661 ggtagtttgt atttacccat
//
LOCUS       KCOD01002561             685 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 285130pyr ultra-conserved element
            locus uce-4769, sequence.
ACCESSION   KCOD01002561
VERSION     KCOD01002561.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 685)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 685)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..685
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="285130pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>685
                     /note="ultra-conserved element locus uce-4769"
BASE COUNT          212 a          108 c          123 g          242 t
ORIGIN      
        1 tttgaagttt acatacagag tagttttaac tggctttatc tttcatatac atatagacca
       61 attgaagcat gaacgtggat tgtatttaaa catatacaaa gaagtgacag ctattcatgg
      121 ttcaagtatt aagcagatca tactaccagg ttttcaaagg attttagaca caattatctc
      181 aagctcccac aaactaattt tggcaacagc catgataata ggtcaccatg ttgtgttctg
      241 tttgaaatat ttttttgtaa atgtctgcac tgaagatttc tttttgtttg cctttatgta
      301 aattttttac gtagctattt ttatacactg taaggctttg ttctgggagt tgctgttaat
      361 ctgatgtata gttttatttc aattgttttt atgacaccct tcgagcaggt acatgtctaa
      421 ttctggttgt tatcagtgaa gcctctgctt tgtagcaagt accttaagat tgtcttaaag
      481 gaagatgtca aactcccttt tcattctttg aaatcatggt aaagcgagtg acagctgtga
      541 caagaatgaa ctaaattgtt aatgaaaagg aacatttagc taaacaggct agataaagag
      601 tttccctgaa gaattctggg ttgagcaagg aacactatga aaaattccta gcctacataa
      661 taaatccttt tcttctagag caaga
//
LOCUS       KCOD01002562             673 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 285239pyr ultra-conserved element
            locus uce-453, sequence.
ACCESSION   KCOD01002562
VERSION     KCOD01002562.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 673)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 673)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..673
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="285239pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>673
                     /note="ultra-conserved element locus uce-453"
BASE COUNT          174 a          137 c          122 g          240 t
ORIGIN      
        1 tttcttggtg cctcctttct tcagattgct agcaagctct tatttaccac agcgtgttat
       61 ggaacttgtt ttggaaagat atttgaatgc tgtatacagt ctgaaagcat atttaaagct
      121 gttgctttcg atttttcttt taattccttg ataccactgc taatgtaaag gacatggatt
      181 gaagagagga tcttcttttc ctaggcaatg tgttattgat gagctggcat ttgccctgtg
      241 gctctccccc aggattgctt acatctatta ctcacacaca tcgattggtt aatttgataa
      301 ttctatcacc aatcagcttg tgtctgacct tttgccatgg caatgatggc agagtcttca
      361 tttttacatc gcatacctgc tagattgacc tttctgagga gaatgtcaag acatcccttg
      421 atcttaacct gtcactaaat ttgttagaat tacactgtcc cttaaccttg atctgttgta
      481 tttgtaacgt tcaggatacg cagtttgtgt gggaatattc ttacataact tatgccagtc
      541 aaaaagtaac actttcataa ttaaaaatta gcttcccaat aagaaagtgt ccattcatct
      601 gtgtagttct catgcatcat cggctagtcc ctaagaagta ctttcccttt ctgtgaccac
      661 tgaaattaga ggg
//
LOCUS       KCOD01002563             373 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 285342pyr ultra-conserved element
            locus uce-6072, sequence.
ACCESSION   KCOD01002563
VERSION     KCOD01002563.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 373)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 373)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..373
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="285342pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>373
                     /note="ultra-conserved element locus uce-6072"
BASE COUNT          121 a           59 c           64 g          129 t
ORIGIN      
        1 atttgcattg ttctagagca gatggctata ttaacacctg tcttttagtt ttgaattctg
       61 tcagtaatct tgaagtgtaa cattcacagc cattggtgtt tttgcagcac attaagcttt
      121 tatgaaagta aaagttaatt acatgtgatg actaaactct agggatcata attagctgaa
      181 ctgaatggct gcacatcagt aattaaatgt catttcactt cattgtactg agaaacccta
      241 cccttaaaat gattggaatc tattattttc ctcagaaaac ctaaaggaac actatagaaa
      301 atatactaag tggtaaccat aattatgagt tagtttcagc acttactttt tcagagtttg
      361 tctgtggaga aga
//
LOCUS       KCOD01002564             760 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 285451pyr ultra-conserved element
            locus uce-583, sequence.
ACCESSION   KCOD01002564
VERSION     KCOD01002564.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 760)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 760)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..760
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="285451pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>760
                     /note="ultra-conserved element locus uce-583"
BASE COUNT          227 a          142 c          136 g          255 t
ORIGIN      
        1 tttttgaaat gcaccaaaag cttttgttct gtccctgaat catgttgtgg ctcctaaatt
       61 aggtaggcac atctgttgac ttaaaacatg cagtctgcac ctggaaaaaa attatatttc
      121 taattttgac aaatagttat gttttgttct ctctgccatg aattagggca cactatcgct
      181 ctttgtttct agcaagtaac tgaagtatta ttaagatttt ctttccattt cttagaactc
      241 cccagggtct atagttttct ttgcagaaac agttgccatt aaatatgctg tatgtcaatg
      301 cagcagtgag gtggttaatt ttgactgaat attatgctat ataaccactt ggcatttaac
      361 ttgaaaaatg actttctgct tcacctgtca gcagcccagt tctcatcaaa taagtgagtg
      421 agaaaaattt ttaaatttca atttcctgat gctattagac actacttctt ccatacttaa
      481 acagtttagc agtgcatgta catgttttgg tattcatgcc atgcatcaca ctacatgcta
      541 ttacaatagc ttttttgttt aaagggtaaa gagatgcatg gatctttatc ttggaattag
      601 gaaaatgtat tgcaggaaca tggccaatca ggtttctgaa taactttgta acatagtacc
      661 ataaccctgg tgcagtgcaa ggaatttaaa atactaggtg cctccgagtc cacagaaaga
      721 aggcattcta gatggagaca ccagcacagc aatcctgcac
//
LOCUS       KCOD01002565             403 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 285563pyr ultra-conserved element
            locus uce-3921, sequence.
ACCESSION   KCOD01002565
VERSION     KCOD01002565.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 403)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 403)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..403
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="285563pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>403
                     /note="ultra-conserved element locus uce-3921"
BASE COUNT          109 a           76 c          122 g           96 t
ORIGIN      
        1 tcatagattg tgatccaaga gatacatttg tagaggaatg agggaaccat atttctatag
       61 cataataaat gaaataaatg agctggcttg caacactagg tggcagaggt gggatctgtt
      121 ctgctctgag cgctgtccta taaggcattg cttgtttaag tacagtcgca tttagttgga
      181 gctgcaggag agagacagag agattctctg tgtttacagc cagcccaggc tacggtggag
      241 catccaacct gtccagcact tgaaggggag agtgcgaggt tatttgggaa tctggccacc
      301 gcgggtcagc ttgcgctgtg actggattgt cagagctggc aaagcagagc ccagagggac
      361 tgaagggaga cacgaatccc attttcttcg aggggagaga aga
//
LOCUS       KCOD01002566             238 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 285664pyr ultra-conserved element
            locus uce-4765, sequence.
ACCESSION   KCOD01002566
VERSION     KCOD01002566.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 238)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 238)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..238
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="285664pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>238
                     /note="ultra-conserved element locus uce-4765"
BASE COUNT           75 a           54 c           46 g           63 t
ORIGIN      
        1 aagttcaaga caaggataca tgaacttcat caagtttaag caaactgtct ttgtagtaat
       61 taccaaagca tgcttttttc tcataggcca cagtgatgga tcagtgaaga gttcaagtaa
      121 aatacgcaag ctttacccca ttacgttcgt agcaaacact ccctgttgga ctttgacccg
      181 gggcagctgg agatttactc tctaaattgt gaggaacagc acacacaacc taccagtc
//
LOCUS       KCOD01002567             804 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 285770pyr ultra-conserved element
            locus uce-2082, sequence.
ACCESSION   KCOD01002567
VERSION     KCOD01002567.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 804)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 804)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..804
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="285770pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>804
                     /note="ultra-conserved element locus uce-2082"
BASE COUNT          250 a          158 c          129 g          267 t
ORIGIN      
        1 acttaaatag cgcactttaa aacaaaaaaa actccaattg gcttttcata catccaccct
       61 ccccaaaaat aacgcacttg aaaaacccaa atgatatgaa aaggcttcaa ggcctctttt
      121 ctccttttca cagcactttt tttttatttc tgtttgcagt aatctgcctt tcactttctc
      181 attgctacag aacaaacgag gaggctcagc actttgaaaa gggggctcaa tgtgtaatgg
      241 gtccactaga attaatttag ttgcaccaaa tccattgagc agtgaggttt ttttctcttc
      301 tcaaatcatt ttgagtcgga tgcagccccc agcctttgta attctagtaa agcacttaaa
      361 gtgcacagta ggtgttcatc aggaccatct ggtcaaaagc aaaacaagct gctgattttg
      421 cctttgaata gaatgaagca agtgtgaatt agtctcttca attagcacta ttacaacctg
      481 tcaagtgcat attgtaaaac aggattatta cagtattggt caccagtgca attatttact
      541 ctctgccttt tcttgcatat aaaaatctcc atgtttacta gtttttaata actgaagatc
      601 gtttctttaa tgatatgcac gtccaaaccc accaaaatca aattacaggt tatgaaacat
      661 attctgtcag gaatatatta agtttcataa ttaagtgaga agtgtgccct ttctttatct
      721 cttattgctg tttctgttgc agaaaaagaa aatttttcag tgggatatct taaagagatc
      781 tcttcagtca ggtattaaga tatt
//
LOCUS       KCOD01002568             552 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 285882pyr ultra-conserved element
            locus uce-6252, sequence.
ACCESSION   KCOD01002568
VERSION     KCOD01002568.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 552)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 552)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..552
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="285882pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>552
                     /note="ultra-conserved element locus uce-6252"
BASE COUNT          133 a          127 c          117 g          175 t
ORIGIN      
        1 ttttacatgt ctgaatggag catgggaaaa tgatacgtgc tggcaacaga ggatttcttg
       61 tgaccaggtt tcatgggacc accctccttt tcaccctcag gacctggagc ttccccctcc
      121 cttccacccc tggtgtgctg tcagtgtctt ttcctctgct ttccagtgtg attattctca
      181 ctcctgtttg cacacacaga tggagctcaa tggatgccta atagcatcat ttacttcatt
      241 aacatgcaat tagcttaatg aatattttaa cctcattatg tagttactca tctttatctg
      301 ttgtgggtaa gtctagtgcc cagctctgga ctgaaggaca agccaaagta gtccagttct
      361 ccaattatgt tcaaggggtt tatacagtcc tttttacacg tcacatctat gatggaaggg
      421 ctggtacaaa agcagaacat tttttcttca tcttcccctg acttagtgat gagacagaag
      481 cagagggtgg tgatacagaa ttcttgtggt tctgctgact tgacgaaagc tctaaggctt
      541 tcctggcaga ca
//
LOCUS       KCOD01002569             577 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 285990pyr ultra-conserved element
            locus uce-5456, sequence.
ACCESSION   KCOD01002569
VERSION     KCOD01002569.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 577)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 577)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..577
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="285990pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>577
                     /note="ultra-conserved element locus uce-5456"
BASE COUNT          179 a          109 c          116 g          173 t
ORIGIN      
        1 atctgttctg aagtgtaatg aaaatcagaa acttgtagtt cagaatttta aaatcctgat
       61 tctctggctt tgtttcttat tatttagttt gaactcacac aacagaactc tcgcattgaa
      121 atattttctc attttaagga attaatggct ctccaccagc ccttcaacat gtaaaatgag
      181 taggttactt gtgtccagta catccaaaaa gagccaggat aaaataaaca taaggagttg
      241 gatatcttgg aaaaaatctg tcatgggttt gggttaatca tctccagaag aaattcaact
      301 tgatgcctga aatgtaagac ttcttggaga aagcagtaaa gcctgaggca gtgttgatct
      361 gaaggagtgc tctccatggg tcagagctgc tctgctggca gagtgcaaac ccagttcaca
      421 acagtggtac gctgaaaact tgtaaaggac tgcaggggcc ttacagtgca cgcactcaag
      481 cttcggttac atagttctac tggtccagtt tcttattata aaataaaact gaaaaataaa
      541 atctgtgcct aattttctag cctcctgtct gtcaatg
//
LOCUS       KCOD01002570             755 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 286103pyr ultra-conserved element
            locus uce-816, sequence.
ACCESSION   KCOD01002570
VERSION     KCOD01002570.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 755)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 755)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..755
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="286103pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>755
                     /note="ultra-conserved element locus uce-816"
BASE COUNT          251 a          128 c          121 g          255 t
ORIGIN      
        1 ccaagttact ccctatttct ctttaaacaa ataaggttag caaccctttt gccattcaca
       61 attcaacatt cacactaaat taatttttcc aaaagtaatt caaataaaag ctttgctgct
      121 gctacccttt tcagagctgc aagattgaat aaggcatctg aataaaattg tgtattacag
      181 ccttctttaa tatttaagca tgacattcat tgatttgttt cttgttttct gcaaaccttg
      241 acaacatgat aaaataaatc ataagaagaa aatatagtgg taacatcttt tatggacttc
      301 acatagtcat caatctcaag ctgtgagtga attatcagtg cagcaaaaag atctatgttt
      361 taagagctcc aacagcacac tagctagagg tttttcacaa gcaaactcaa ggcgagtgac
      421 tgataagcat cattattgtt ttctgagagt ctggtttata gtgtgttgtg gaggtgttgg
      481 catatatgtt tcagaaggaa aggtttgatc aattctaagt agacatctac taacatataa
      541 aaaatataac aagggctcct gctgagcagt attaaagtac ctattgcacc atgtcagcat
      601 gacaggcccc atgttgtgtt tttgattata tttaatatag aattaacctt tcttaatgga
      661 acatattgtg catgcaacgg gagtgaaaaa tatttacaaa tatcatcctt atttaggttt
      721 taaggaatac ttcttttcaa tttataaaac ttctc
//
LOCUS       KCOD01002571             444 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 286202pyr ultra-conserved element
            locus uce-1879, sequence.
ACCESSION   KCOD01002571
VERSION     KCOD01002571.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 444)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 444)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="286202pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>444
                     /note="ultra-conserved element locus uce-1879"
BASE COUNT          179 a           57 c           94 g          114 t
ORIGIN      
        1 gaaactttgg ctgtgctccc tcttttccaa atgcaactat gtaaaggtca cagaggagga
       61 gatgaaacta ggagttgtaa taaggaagga gaaataaaaa ataatgacag aaataaattg
      121 tcataagagg ggatacagtt atgatttatt gtgatattct acaaatttgg aggtgattaa
      181 aagccaccta aaattcacat taacaagtca cataaaaatg gaattaaact agtgggcata
      241 atgtggcagg gtataaagaa aaatcatgac agaaataaat tgacagaaga atgatactat
      301 tcaagtttta ctctgtcgcg tcacactgac aggagactat ttcagagttg tggttgagtt
      361 tcattaaagg cccacattaa gaatctcata aaagtgagaa gaaattagtg accataatgt
      421 ggcagaggaa ataaagaaac aata
//
LOCUS       KCOD01002572             779 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 286308pyr ultra-conserved element
            locus uce-1138, sequence.
ACCESSION   KCOD01002572
VERSION     KCOD01002572.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 779)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 779)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..779
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="286308pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>779
                     /note="ultra-conserved element locus uce-1138"
BASE COUNT          238 a          154 c          156 g          231 t
ORIGIN      
        1 gctgagcagt tgttcttgag ctgggcttta aatgaagcat gcagaatttt taatttggga
       61 agaagatgat ggagagtaag cttgaaataa ttcctgagag aggaggtggg ctatagtgga
      121 aaacatgtca acaaacaaac aaaatctttc caaatccctc cagtcagccg tctccacatg
      181 ctatggtgcc tgtccctgtc ctgcactgta ctgctggagc aggatgactt tggtgtctgt
      241 tccatgcaat aacatttgaa agtttcaggt ttggctacta tatgattgca gtttcagtag
      301 taaagggatt attctgagag gcatacaaat gtgattgtct cccagcagat ggtgcgcact
      361 gcttcacctt tgagaaaagt taattaagcc aagcatattg tgcccataga gaggaaaatg
      421 tagatgaata ttgagcaatc aaactcagtg tctccttttt tcatgccttt gcaatgggac
      481 acagaatccc attgaaaaag aattatgtac agaatcaaat taattcacgt ccaactttac
      541 tctcttccca cgttttaaca ggggtgcaca ccaggccctt cagaagtttt gtccacaatc
      601 aatgggccac actgctgtgt ccactaaatt aaatgaatca gtgcagaaaa atctcttgtg
      661 agatattaaa agggtgaaag actgtttaat tcaaatcctt ccgtagtctt ttcacagccc
      721 cttttacata gtacagtata aattattaac taactccttt tatctcagat caaattaca
//
LOCUS       KCOD01002573             271 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 286412pyr ultra-conserved element
            locus uce-2124, sequence.
ACCESSION   KCOD01002573
VERSION     KCOD01002573.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 271)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 271)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..271
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="286412pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>271
                     /note="ultra-conserved element locus uce-2124"
BASE COUNT           91 a           46 c           40 g           94 t
ORIGIN      
        1 caggttattc cctaaccatg gctagatgta ttgcatcata aaatgtcaac atcaaaacaa
       61 tatagaaaaa ataattacag acagtgttag tgttgtaagc tgataaggac cagatggtct
      121 tttgtattta tggtttgcct tgtgcataca aatgcttttg ggatctaatt agccttctac
      181 aaaactcaaa ctgggtaatt actatcatta tccccttttc aaataaatct gaagtctaaa
      241 ctgcaattaa gttttttatc ttacaattca t
//
LOCUS       KCOD01002574             668 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 286523pyr ultra-conserved element
            locus uce-1217, sequence.
ACCESSION   KCOD01002574
VERSION     KCOD01002574.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 668)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 668)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="286523pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>668
                     /note="ultra-conserved element locus uce-1217"
BASE COUNT          201 a          111 c          155 g          201 t
ORIGIN      
        1 atacctggag gaattttcct gcctgggaac gtcgtgctgc tgggaatgag caagctccaa
       61 aagtaatact gacagacttc agaattatga tacactggag ctgcggcgta attctttgtt
      121 gaagaagtta aaaatgttaa ggcttattgt tattccgagt tgataatctc tgccttgctt
      181 taataatttt tcctcatgcc tggatagcct gcgagttgca caataatcac tcacacagct
      241 ttgtaatcaa tgcccaaagt aataggattc cgctggccaa cggcaattaa taaatttgtg
      301 tcttttttaa aacactagca agtcgggcct gaaatacgac tgactggctt tcctcatttg
      361 catatttatt gcagtggaaa aattcttgcc gaatgattga tgttgagcct gcctcttgaa
      421 ttccaaacag cacattatta tgaaatgaaa aatgccggcc atacagttga ttaaagttga
      481 agacagtgga atcggtgttt tttaagattg tgggagaatt aaaggcatat tttaatagat
      541 gttgacaaga agtgaactaa caaaagcaaa gcaaaggatt tgcttgaaaa gatttaatca
      601 aacgtgtttg gtgggggatt aattgctggg gatgacgagt gcaagtggct ggctgctggc
      661 tgtgaatg
//
LOCUS       KCOD01002575             642 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 286634pyr ultra-conserved element
            locus uce-703, sequence.
ACCESSION   KCOD01002575
VERSION     KCOD01002575.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 642)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 642)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..642
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="286634pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>642
                     /note="ultra-conserved element locus uce-703"
BASE COUNT          185 a          133 c          126 g          198 t
ORIGIN      
        1 cttggctggg aaaatcgtga tgtatacact gtataaaagt gccaaaataa gaaatgtgta
       61 gactgcagcg tctctggtag taaatctttt ttgtaatcct aacttcatat ttccattgaa
      121 ttgttcctct cgagctgtgc agacagttga agtatttgag tgtagtcaca tatgctttgg
      181 tgctgctaac agccctaaag ttggtaatcc tgaggcacaa acggggccag ggatgactcc
      241 tcgggctgca aaatattaca gcacacctta tatagtgctt gctttcgaaa tttcctttgc
      301 actttgttta ctatatattc caatagtgta atattaaaca aaaacagtgt gtcctgtgcc
      361 agaatgattg attactacac cgtggcaagg tcacctccta ggaacaggct gagtgcagta
      421 agggctgtct gactcataca gttaacacta tatccgcatt gtatgaatgt caccagcaat
      481 ccagtgattt attgcttgga aggctctgtt caattttttc tgcctgacca aattgcacat
      541 tttctagaaa aagaagcaaa aatatttcag cacatggatt accccaagtc ctcatttctc
      601 ccactaggtt caacgagtct tttcaaagat gctgatcatc aa
//
LOCUS       KCOD01002576             668 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 286743pyr ultra-conserved element
            locus uce-2196, sequence.
ACCESSION   KCOD01002576
VERSION     KCOD01002576.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 668)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 668)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="286743pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>668
                     /note="ultra-conserved element locus uce-2196"
BASE COUNT          238 a          116 c          118 g          196 t
ORIGIN      
        1 tcctttaaga tatgcctgga aactctacaa gaaatagatt ttcctaacaa acaaaggcct
       61 ctaataactt gggagcaaaa ttaactgaca atgctttgtt aaatcaaaaa gtgattactt
      121 gaatggtcat aatcatgcaa ttatctcatc ttcacttttt tgaagactgt atctatatct
      181 actcctatat cgggagtgag tagggggagc tctaatgctg aacctctgat gtattcataa
      241 atcagtactt tcagagcctg tcatgggctc cataatgagg gtcattattc aggcagagtg
      301 tcaaaactac tatcaaagga ccttctcaga atcacaatca ttctgtttct tgttaaataa
      361 gcaatgtagt acacaaaaat ggcaaacaag aagcaggtca atttgataca gtatgagggc
      421 acagagacct ctagagtaat ttaccctgtg ggaattctga tggtttgtga gataaattat
      481 atacaccctc agaaatgatt aatggtaata aaatcccagg aatattttca gaaaaaaagt
      541 ccatatgtac atatcttcag taacaaagaa gacattttct aaagcggaac acttaaagaa
      601 aattattatt agaactgcaa gtagctctcg ggaaagctac taaatcttat tacaaagttg
      661 gcagcatt
//
LOCUS       KCOD01002577             791 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 286855pyr ultra-conserved element
            locus uce-2488, sequence.
ACCESSION   KCOD01002577
VERSION     KCOD01002577.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 791)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 791)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..791
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="286855pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>791
                     /note="ultra-conserved element locus uce-2488"
BASE COUNT          252 a          180 c          154 g          205 t
ORIGIN      
        1 aaaagcatct cctacttact aaattgtaat tctgctttta gtattgaact ggaatccaca
       61 gacaaagaaa taagcacccg aacacccttt tgcctctaaa atatgctcac ttgaaaagat
      121 tgaaatatgg ttaaataaat aaatgaacag aagaagtttt tggccattct tgcaagagca
      181 cagaatccat tccacataca cactacaagg attaaacaga aagggaaact tacagcttta
      241 gacacacttt gtgtctcaat accaactgca gcaccagctt ctctgtaagg attatcaagg
      301 ctacagcccc atgcagctgt cagtccctgg ggctgtaatt cagctatcct gctctcactc
      361 tatccatcac atttacacaa atccccaagg tggactgcct tctaaatgtc tttaccttgt
      421 gcattatcct ggggcttaac aatccaatat tggtgcagcc aaggataatt actctccatt
      481 gatgataaaa caccctgaat cctgtcaggc atggcaattt gcatcttaca gtgctgagga
      541 tcaatagata caacaaagga gtgaaacctg attagatact gctgcctctc aatggaaagg
      601 gaagagctga ttattttgca gggttgaaat cctggttaaa aaggaaacag aggtctccca
      661 ttacaacaca gtccccaagc ctgctgttca cccagaaact gctgcaggga gtttgagacc
      721 caaggagaaa gtagttgaat gaacaaccag gtcttacaga ctgggagttg tttacttggg
      781 ccagcgtggc t
//
LOCUS       KCOD01002578             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 286964pyr ultra-conserved element
            locus uce-1446, sequence.
ACCESSION   KCOD01002578
VERSION     KCOD01002578.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="286964pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-1446"
BASE COUNT          180 a          135 c          102 g          223 t
ORIGIN      
        1 ccccaaagag agctggatag caaaattgcc cataaaatta tggggagtga gtctgatagg
       61 aaatgttatg aattttaacc tctggcttct gtacagagac caccttcatg tgatctggtt
      121 ccttagtgaa attattcctc tgtgtatctt tatatcattt tcttagcttc taaccactgt
      181 atttctgcac agttttgtat ctgctagccc cagcatttcc agcctacgaa aacctcataa
      241 atctacttca tttttctaat aagacatgaa agtccttaat tggccttaat gaaatgcact
      301 taaagggcaa taaacgtgtt taagcccctc tttcagggtg agctacagta ctctcactct
      361 gctctgtttt agcctttgtg gtaattaatc acttattcat atgtggcaca tcagtaacaa
      421 gatcaagcaa ctactgcaca attgcatgat aataagctgc tcatatatgt gtcaagattt
      481 agcaatcctt tttaaagcct aatttaaact cattttacaa ctaagcaggc tgcttctctg
      541 aagtatttct acccagtatc ttttttacat attgctgctg aaatgccatc tttttatttt
      601 gtttatagag ctgcatttgc ctgaaatcta ctcatggcac
//
LOCUS       KCOD01002579             517 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 287071pyr ultra-conserved element
            locus uce-4652, sequence.
ACCESSION   KCOD01002579
VERSION     KCOD01002579.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 517)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 517)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..517
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="287071pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>517
                     /note="ultra-conserved element locus uce-4652"
BASE COUNT          182 a          101 c           82 g          152 t
ORIGIN      
        1 aaaaatattt tgcgacccca atgtactcaa ataaaaataa tctgctctaa ctggaatttt
       61 gtatcagaaa ccagcaaaca gatttctatc taaattattt agtcaacagc atggtggtat
      121 ccttgctaac cttatatggc accagtgaat aattagatac acaggggtgt gactccaatt
      181 gaaggtgtca gcattgtagc actctgtgaa aatattaact atgaggttaa ctccaatttt
      241 ctcttcttta attaaatgca catggtacta atgaggtaac ctactgttcc ttgatagcac
      301 taattagcta agaggagagc acactctcac actgcaattt aaacctaaaa ataaggttga
      361 aatatgctaa ttgcaggcaa tttaaaacag tccaagttgt agaactagtc ataataagga
      421 aaactgactg ctttacagct ctgcagctgt aactttggtt aaaatcaaaa caccccacat
      481 ttttagaaca atttggcaaa atatccacca gcctcct
//
LOCUS       KCOD01002580             638 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 287178pyr ultra-conserved element
            locus uce-899, sequence.
ACCESSION   KCOD01002580
VERSION     KCOD01002580.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 638)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 638)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..638
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="287178pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>638
                     /note="ultra-conserved element locus uce-899"
BASE COUNT          211 a          115 c          126 g          186 t
ORIGIN      
        1 gcagctgccc cacagcagca gctcgaggga ttcctgtctc tcccagaatg gagcaaaaca
       61 acacgaacag gccttctgca taatgaaaaa ctgttaatgg ccatctttag taacatagca
      121 acagccaaac ccttgaaaag aggaagtttt cattgatttc attttaaaca ttgaaatttg
      181 gtataatgta gtgtatgaaa taagttttga aaggaagctg atgattaaga agaaatgcag
      241 tgggcattta ataaatggag gaactgcaag ataattaact ggcatgcata aagattcatg
      301 ctttatacca aaattttaat tttgcacata aatgtgcctg atgtaggcag catttaatca
      361 cctagctgac aggagtaact actttcattt aaccttgact gaagatcatg aattctaaca
      421 ggtttaattg gatacatcat ttaacagaat gaacagagca aatttttctc aattcatagg
      481 ttctgattga catgcaccag caataaggcg ttgcacaatt aaagctgatc tgtattcctg
      541 gcctgggcag caattgccat agtgatgtga cactgtttga tcactgtggc actgaaacta
      601 tactgaattt ccccttgttt tgaaaagggc aatgcttt
//
LOCUS       KCOD01002581             737 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 287291pyr ultra-conserved element
            locus uce-4486, sequence.
ACCESSION   KCOD01002581
VERSION     KCOD01002581.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 737)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 737)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..737
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="287291pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>737
                     /note="ultra-conserved element locus uce-4486"
BASE COUNT          190 a          141 c          175 g          231 t
ORIGIN      
        1 tgttattatt ttttgttgat ggttcttgaa ttcctgaatg attaagtaaa tgcttcttga
       61 atgttaaaaa attgaattct ctgtcatagg aaatgtggag cagaactgct accgtggacc
      121 tctggaggga gagacgggag ctgtttcggc aggcttgggt ttctctctgt ttatgtgaaa
      181 cggacattgg catatcttgc ctggactttt cctgtggggt tcatatggta ggcagggtgg
      241 ggaatagttg tctgagccat accaaggtca gcctgctaga gctgacagtt tctgtctctg
      301 tacaaagaaa agaatcaata cttttggact acggctgtgc cctcagtgta aaacaacaaa
      361 catgcagcgt ctgacatgtt tctaggtgat ttgtggcaga acctcttgtc tgatctgtat
      421 ccaggagctg ctgtgttact gctctgtgct tttcttctct ctctcgagct ctgtgatgtc
      481 taatacttta ctcaggtaca gaggcgtgtg ttctacccta cagctacttg tcactcaata
      541 aatcacacct acaagcacag tctgcacata gtgatctggg ctttaacaaa ggatcagagg
      601 gacaaagtgc aggcaagata ctgtaattat aacaaaaata aaacattcag ggggttgtag
      661 caaaggcacg ggctcccagg cactaataaa atgttattag aattgcagtt ttgtttcagt
      721 ccttcaggtt tcatttt
//
LOCUS       KCOD01002582             405 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 287398pyr ultra-conserved element
            locus uce-5272, sequence.
ACCESSION   KCOD01002582
VERSION     KCOD01002582.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 405)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 405)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..405
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="287398pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>405
                     /note="ultra-conserved element locus uce-5272"
BASE COUNT          136 a           60 c           71 g          138 t
ORIGIN      
        1 tttaaatata ttttttttgt attttactgt gcagcttatg tactcaaagc atcacctaag
       61 tgccaataac acattcttga ctgaataatg atgtatgtgg aatgttactt tttttgtctt
      121 ataaatggat ggcaatttac acagctgtgg atgtgggatg tttcaatccc agaccatgtt
      181 gtaagaaaaa ttgaatgaca gtgagcaaaa cagcagtaat tataaaacta attactaaat
      241 gctgatgatg cccataggct ttgcataact aaaattagaa aaggaaattg ctttcggctt
      301 cagagaggca acatgctagt tatttcactg tttcagtcaa aatggaacgt ggtgtataaa
      361 gttcaatcac acattagttt atgcacatat tttttcatac taaaa
//
LOCUS       KCOD01002583             518 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 287506pyr ultra-conserved element
            locus uce-1508, sequence.
ACCESSION   KCOD01002583
VERSION     KCOD01002583.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 518)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 518)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..518
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="287506pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>518
                     /note="ultra-conserved element locus uce-1508"
BASE COUNT          157 a          102 c           98 g          161 t
ORIGIN      
        1 agtaccagtc ccgctctttc tgcagtcaat aaaagcccaa accaaactaa aatcctgaca
       61 gcacagcact gaactagtct gacatcagct tcttcctctg aaatgtttta agcagcaaga
      121 caatatccta tgttttttgg caatcagtgg atcagataga agagtctagc aatacaacaa
      181 ggatgtgtaa tctgacatga ttagacaagg ctctttagga acagaacatt cataattgag
      241 acaaagaaag agtattaata acactttcct aacacggcag ttagccattt tatatttcct
      301 ttctttaatc ttagtgtttt tcaacaaatc atgggattta atagcgtgtt ttggcagatt
      361 agaggattta tggcccagat gttttttgtt ctaaaaatgg attagggtgt aaagtttgct
      421 ggaatccatg gaacatgttg aggcaagccg gtcattttgt gtgtgattag tgcctgcctt
      481 ctgtctcaca gtccctccat ctgtcacaat tcaccaat
//
LOCUS       KCOD01002584             462 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 287615pyr ultra-conserved element
            locus uce-7566, sequence.
ACCESSION   KCOD01002584
VERSION     KCOD01002584.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 462)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 462)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..462
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="287615pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>462
                     /note="ultra-conserved element locus uce-7566"
BASE COUNT          124 a          114 c           95 g          129 t
ORIGIN      
        1 atacagccgc ctgttcccac acaagtgggg cgaaaggcga gaggctttga gaattccctg
       61 cttcttttcc tctcctccct ctttttctgt tcctccaaga aatcacagtt tcccccctac
      121 tcctcccgtt ggaaagaaag acagagaaga cattcttgac attctttgca gagaaaaggg
      181 gttaaatgtc tgaatttggg ggtcaccacg ttatacaaat tgcaatctaa tcgtttttac
      241 aagaacacac gtgtgctaag aaaaggagcc atggacaaga aagaaaaggg gatagacaac
      301 cttgtcctat cttccccctc aaggttttgg actattgtca tgtcctgtct ctctcccctc
      361 ctcacccccg agagggagaa cattggtttt atagttaaat tggttcataa agcagaaggg
      421 cttggtgcca tttctgtttg ttttcccaaa taaaagcccc ag
//
LOCUS       KCOD01002585             469 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 287721pyr ultra-conserved element
            locus uce-3931, sequence.
ACCESSION   KCOD01002585
VERSION     KCOD01002585.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 469)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 469)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..469
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="287721pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>469
                     /note="ultra-conserved element locus uce-3931"
BASE COUNT          142 a           97 c           97 g          133 t
ORIGIN      
        1 gacctccctg gatgcattca aggtgttgcc cttatctggc aggaatcact gctgaggtaa
       61 ggtgctaacc agaagcaaag gacacactta tctgtattgt gcttctctct gaaaattcag
      121 tgagtgccta cctgctgctg ctgttctttc ttttcgtgct ttcttggcac atgtaggaga
      181 ggataaaagc ctaatgggtg cgagtgtcag cacaatataa attgctgcaa ggaaaaactt
      241 gatgcatggc ttgggatctg aaagaagaat gtccaccatt gtttgtgatt atggatcaca
      301 tcacaatcta atagcaattt ttatttaatc aataatttcc atgctgaaca gacagccctg
      361 ttacagagaa tcgacaagca agtactgata gcgacaaggc ttgttattaa tctttaccct
      421 gccaacattt caaccaaact aaaaaagcac caccaagatg gatttagaa
//
LOCUS       KCOD01002586             576 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 287830pyr ultra-conserved element
            locus uce-3032, sequence.
ACCESSION   KCOD01002586
VERSION     KCOD01002586.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 576)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 576)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..576
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="287830pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>576
                     /note="ultra-conserved element locus uce-3032"
BASE COUNT          184 a          103 c           93 g          196 t
ORIGIN      
        1 taagtatgaa tgacagcgat agctaatgta ggattgagtt ggttaaagaa aatcaatcag
       61 aaatcctctc tatagattac tatccagttt cttctgcctt ttccagctaa cacttctcat
      121 ccttgacttt gaaacccaac agtttaaact cggttcttgt ttcagtggac taatcccctt
      181 tcataaatca tgttcaagtg ctgaaataat ttgcacatcg tttaaagagt atttgctttg
      241 aaacattcac ctcaagccct tttgtatatc ctttctctct aaagatttgt attatttgtt
      301 ttgttctctg aggtataaaa gacctgggta aactttattc ctgttgtttc aagattagtg
      361 aaataaaatg catatttatt caactgggac tgaaaggagc tttagtaaag acgatcatac
      421 atacgaccca ggggaatgtt ataatacaaa atgtctgtct taaaatctct ttaggtttgt
      481 tcaaaacact gttgaaggac ttaagtttaa agaggttaca aatccatatt ctttgttcca
      541 aaagagaggg acatcacgta aacaaaacaa actcct
//
LOCUS       KCOD01002587             545 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 287932pyr ultra-conserved element
            locus uce-5097, sequence.
ACCESSION   KCOD01002587
VERSION     KCOD01002587.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 545)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 545)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..545
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="287932pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>545
                     /note="ultra-conserved element locus uce-5097"
BASE COUNT          170 a           81 c          123 g          171 t
ORIGIN      
        1 ttcctgataa atctagttca tatagatcaa cagttcaaac aatgtgtttt ctgggtctca
       61 ggaggaaatg tctggctcac ttttggttta gtaacttata gggattgagt tttgaataat
      121 gtaaatggga ggcgggtgat aatttgtaat actgtgagtg caattagtga gatagattca
      181 ttttttctga aaagaagtct gattgctatg cagaaagcac ctttgtttgt gatactggct
      241 gctcataatg tggttagcaa tgcacaaagt ggcattttga tttggagctt taaagaattc
      301 tgggatgaat aaaacatgaa attaattgcc agagaagaat ctttgccaga ctagacgaga
      361 tctactgtgc tgaatagaag ctgtaactta tgacagggtc tgttccactc ccaaaggaaa
      421 ttatgtcaaa aggttaaaaa gcacttaaaa taatttgcag taccagcctt cctcttcaga
      481 tgtgggttga ttcgtgtgtc ctatcatcct gcagcaggat ggaacagaaa tgtaaaatgt
      541 caaac
//
LOCUS       KCOD01002588            1000 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 288039pyr ultra-conserved element
            locus uce-558, sequence.
ACCESSION   KCOD01002588
VERSION     KCOD01002588.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 1000)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1000)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1000
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="288039pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1000
                     /note="ultra-conserved element locus uce-558"
BASE COUNT          347 a          170 c          158 g          325 t
ORIGIN      
        1 tatctacagc aagttactat atgacaagtg ttccaaatat gacaagagct attatctgta
       61 aagaaatcta caactctttg tgccatctaa tattctttag catttcaagt aattagcagc
      121 ttattccaaa aacatttgaa cagttaacag atttgatacc tatggttaat cctcattaaa
      181 attacgatta catgatataa ttacatgtaa ataagaaaaa tgaattcaat ataactctta
      241 cccttttcaa tgttgggcac tatgttggga atcatacagt atgtacaatt agatttatac
      301 tgctaagcta aaaatattgg tgaagatcta aaaatgacga acagtgcctt ttaaattaat
      361 gtcttattag ttgagtgaag tacactgaca aagaataatt tatgcttatt caaactgctc
      421 tcgacatctt caggtgtttc caaatgagct cacagaagag tgattaaatg catctgataa
      481 caagccacac attgctgaaa ttacttaccg cctcatttta tgattaatta aacatgtaga
      541 ttaaagttgc aaaagaattt agattaatga gcaagttaag tcttgctgat ataagtgaat
      601 tgggaattgg atgctctgtg gaactttata aacatgcatt ttataatgag taagacaagg
      661 ctacatgttg aatcctggcc acaagggcct ttgacgatgc agtctttttt aacatggttt
      721 gacagctttc aaataacatt ctactataga ctttaaactt tgtgcattgc tgtaaaacat
      781 gagactacat aactcatgta ttaggagtac gattatttca aagctctcca aggtaatgac
      841 cccctgtagc agcagctgtt cagaaaaatt acaagctcga ttgttatttt aatcagagag
      901 aatttagtag ttaaaagcag ttatgcaact agtaaaatta tacgacactc catcagtagc
      961 cttataacat ctttcatagt cctgttcctc ccaattcccc
//
LOCUS       KCOD01002589             491 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 288150pyr ultra-conserved element
            locus uce-6098, sequence.
ACCESSION   KCOD01002589
VERSION     KCOD01002589.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 491)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 491)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="288150pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>491
                     /note="ultra-conserved element locus uce-6098"
BASE COUNT          131 a          128 c          114 g          118 t
ORIGIN      
        1 gtaacgtata ggttggggag caacaaaaac aaatctcgcg cacgatcaca ataaagtgaa
       61 aatcctttct acacacccac aactttagct ctgtctgctg cctggggggt tttaatcttg
      121 caaagagaaa ggggggctcc ctgcgcaaaa ttacgccttc ttctctcatt tgttagctga
      181 ttccatcaaa aagttcgcta tttataggct acacacacga acctggagta atacaaaccc
      241 tcccgtgttg ttgccctcgc aaagtggccg gtcctgaagc atctgatcgg gtttgtgtgt
      301 gtgcgcgcga gtgagagcga gccacgcaga gagcgctgcc atccaaaagg ggaaagaaga
      361 gctcaagctg agagacttat taattgctaa gagctgctct gccaccagcc atgtgagtac
      421 ctaacaatga tcaccttttg cacagatggt cagcgatcag gcacagacac tctccgtcct
      481 tttcctcctc c
//
LOCUS       KCOD01002590             497 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 288255pyr ultra-conserved element
            locus uce-7131, sequence.
ACCESSION   KCOD01002590
VERSION     KCOD01002590.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 497)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 497)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..497
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="288255pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>497
                     /note="ultra-conserved element locus uce-7131"
BASE COUNT          128 a           90 c           94 g          185 t
ORIGIN      
        1 attgtagtgt tgaaaatact cagtatctga ggcagtgaga actatttaag tgtggagttt
       61 tggttcattc ttggttttgg ggccattgtt agtcgtggag tggctaaaat ttattaatga
      121 tatgaattgc atgattctag cacagtggga aatggtattt catgcaactc actgtatttc
      181 ttcttaatct gcagatttac atcaatgctg tatggcatgg ctgggccatt cctatgttct
      241 tatttttagc aattttgagg ttatccctaa attacctcat agccaggtat ttgcatacta
      301 gattactctc gcttgaaaga tgttttgtta ttcttgcacc cttttctaat attacatttc
      361 acaaactgaa actcaaatat ccttagtgtc attgctcagt ttctctatta ttgggaatta
      421 gcatgctttc aggctccctc agcacactaa aattctcata ttacttggag aacaagcctg
      481 ctgttttccc agcagag
//
LOCUS       KCOD01002591             825 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 288366pyr ultra-conserved element
            locus uce-3224, sequence.
ACCESSION   KCOD01002591
VERSION     KCOD01002591.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 825)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 825)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..825
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="288366pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>825
                     /note="ultra-conserved element locus uce-3224"
BASE COUNT          226 a          154 c          160 g          285 t
ORIGIN      
        1 atgcatctcc tgactctatt gagctctcag aaatgggtta gttctttggg gtggctatct
       61 ggttgaaaat tgagcagtgt tgtgttttgc ttgctctgtg atgaatttcc ttaaaatcaa
      121 gagcagctga ttttaacagc tcttcctgat aggaacgtca gtgaacaatc agtcctgagc
      181 acattgacaa gccaaggctt ctactgataa cttcagttta gtttcatggt atttatatgt
      241 cgacagtttt aaaaatgtac ttagcttacc tagctgccat ttttaatatt ttccagtctt
      301 cttgaaaaaa gttattgatt tgacctccta cctaaaataa tgttctttag atctaaagct
      361 ggttagacac attatctgac tgagtttact gaagcaaaaa cattccataa ccttaacctt
      421 ttccctgacc ccctgctttt aacaactgcc gacatagttt tatgctgtta tgtgaccatg
      481 ctcggatgaa atctgtcaaa cagctccttg agttattagg ctgtctgagt ctgacctttc
      541 tgcaatcaaa gatatatgac ttaagggctc agatttgcca tggcaaccgg tccaatttgc
      601 tgccgtgaga aaaggtctaa ttgttgcaga aatttaatga tctagagcga catcagggct
      661 gtgagatttt atgaactgtt tacaccgtaa ttttcatttt gttaatgcag tctttttttg
      721 taacccattc atggctagag cataagtggc tgtttttatt taaaatagca gtgcacacta
      781 taaaagatgg cttggtggaa atatgccact atttggaagc gtatt
//
LOCUS       KCOD01002592             723 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 288479pyr ultra-conserved element
            locus uce-4584, sequence.
ACCESSION   KCOD01002592
VERSION     KCOD01002592.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 723)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 723)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..723
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="288479pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>723
                     /note="ultra-conserved element locus uce-4584"
BASE COUNT          253 a          127 c          111 g          232 t
ORIGIN      
        1 ctcagggata atgataactc atgcattcac aggaagaaat tacttaaagt tcagtaaaat
       61 ggataatata ttaatgtttt ggtatgttta ttaaatactt aacaatgtaa ctagcattgc
      121 tatctttttg catgtgctta gttaccattt taaacaacta cagaacagtg acatgtggta
      181 gtgaagattt cctaagcatc ccaaagcaat atatgtgtgt gatatatgac atccttccat
      241 aaatcctaaa tttacacagt atgctaatgc ttgattccat aatttctttt aaaaatgatt
      301 ataccctgct gctaagagca aaggcatact aaaatcagtt ttctatgctt ttccaacaat
      361 gaaatgcaag ccagcacacc acataaccaa tacttaccat atgttagaag ataatccagt
      421 aggcttcaga cactgacatg atttgcttaa ataaaaatcc cgtttttaag gcagtaacaa
      481 cagcctacca tttttattat tcctttagtg acctactata gaaacactaa tattaaatat
      541 aaatattttt attgtaaatc agcctagtct attttcattg cctttaatgt gtgatggcac
      601 tggcttagtt gctaggctgg aggaaaaaga gctgcaatta aatcattggg ttgttcgacg
      661 aaattctcaa aaccagcaga tattcatcag atcaaaagaa gcctaaagag cagcttcaag
      721 att
//
LOCUS       KCOD01002593             582 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 288591pyr ultra-conserved element
            locus uce-2261, sequence.
ACCESSION   KCOD01002593
VERSION     KCOD01002593.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 582)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="288591pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>582
                     /note="ultra-conserved element locus uce-2261"
BASE COUNT          179 a          118 c          140 g          145 t
ORIGIN      
        1 gagacgagaa caaaactttc ctagttaact tgagcatagg atccacctta agaaaggtcc
       61 aaggagtgag atggaaacca aatacagtca aaggaagttg gggatgtggg tgtcaggttg
      121 tcagtaatct gacagctatg gtaactaccc tctaatccag cagctccagc catgctctcg
      181 gctgacaccg caaggactga ctgacagctg aagagcgggc actttttaca ggcaaaagtg
      241 acatccagtc tattaaggct gacaagcaca aagcagagat ttgccctgaa tggtttggta
      301 ctgaagccta gtaaaggggt tatttgaaag gtcttagaga aagtgtcaga ctcaagctca
      361 gatgataaca atattgtaat gatagcactg gacaatgaag tgctatgatt gcccatacag
      421 gccaggaaga ttgcatgtgg atattgagct ccagaagcca gtttacagtg gcagattctc
      481 aaagcaaaca ggcaacagct gtaaacccac tctgccagaa acttaatttt tttccgtgga
      541 taataatcta ctcgtgcctt tgttactttt gctctggtgt ct
//
LOCUS       KCOD01002594             481 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 288701pyr ultra-conserved element
            locus uce-3509, sequence.
ACCESSION   KCOD01002594
VERSION     KCOD01002594.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 481)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 481)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..481
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="288701pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>481
                     /note="ultra-conserved element locus uce-3509"
BASE COUNT          165 a          108 c           82 g          126 t
ORIGIN      
        1 gtaaagtgac taaatgaatt tttcattcct tagaactaca gaataattta cttcaagtgt
       61 tggagaaatt ctactttgac aaatgaagaa tatttaacac atcaatccac attcctccac
      121 aagactctat ggatcacatc caattcttaa gcccccagaa caaagatgtt aggaactttt
      181 tcacaacgac tcacaagcat tagtttcatt aggagcctat ctcctcctct gaatgcaccg
      241 catgtggttc cctgctgcaa ctctctatgc tttgatagcc ctgtacaatg ctgcttgaac
      301 tccatgccac aaggcaacac tgtaaagaag ctgaaagcaa agagaaagag aatcatccaa
      361 agagtggaat tgctctgtag ccacttttca caatgaagga aggttatcag tggcatttac
      421 tacaactcat gcaaaagtcc tcggaatatg agcaacaaaa acagcatagc aatgctgaag
      481 a
//
LOCUS       KCOD01002595             644 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 288808pyr ultra-conserved element
            locus uce-3716, sequence.
ACCESSION   KCOD01002595
VERSION     KCOD01002595.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 644)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 644)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="288808pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>644
                     /note="ultra-conserved element locus uce-3716"
BASE COUNT          194 a          127 c          167 g          156 t
ORIGIN      
        1 gagatggagg cagaggagga cctgggggaa gaagagaaga gagcgaagat gttgaagggg
       61 gtggggaaga tgtggaaaaa acaaaacagt tccagggcag aggaagggag gacggttcag
      121 tttaattagg agggaacatg agcgaaagct ccaagagaca cgcgtgcaca caccctctgc
      181 tccacaccct caccccccag agaaaaaaaa ttcatcacac cgattttttc atggtctggc
      241 agtcaagtga taaaattatc agatgagggt cccattctcc tttcctgcag tcactttcgc
      301 caagtgcacc acgtctgaaa taatgaagca gatttgatta aattttcgct ggctgaagca
      361 gccacgctaa tttggagatg ggcttattag tttaatgacc gatccgaata atcagaattc
      421 attagcatta gtgccactat tgtcagctca acattagccc tgggctcccg tagatgcatg
      481 gttatatatt tatatagagg gaggctgtgt ttataaaggg tgaaatggac gggaaaacta
      541 tatgttacat tttatacttc ctgcatatcc ttgtccatta gcaagccact gaacgaggaa
      601 taaaacaagg ctttgtgaga gggtcatgtt gctctgccct gggc
//
LOCUS       KCOD01002596             817 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 288916pyr ultra-conserved element
            locus uce-1556, sequence.
ACCESSION   KCOD01002596
VERSION     KCOD01002596.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 817)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 817)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..817
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="288916pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>817
                     /note="ultra-conserved element locus uce-1556"
BASE COUNT          247 a          175 c          153 g          242 t
ORIGIN      
        1 aagtcagagc aacctttaaa ataataagac aaatcaattt atttcacaaa tgtctttatt
       61 tccaaatgcc attgtttggt actttctgct gtcattgccc gtgacatttg agaaaacttg
      121 gctcttagtc atttaggtgc agcagaaatt atcatgtaac agccatgtga aaagattata
      181 cattcacctc agtgcagatc tgctgtaaca accttgtcct atggggtaaa gagtgtttag
      241 gaggcggggg aaggcaaaaa agacaagttt taaatatgga cagaaaagcc ctactttatt
      301 gctatataca atgaaaagta attatagaga aaaatgaaag ctgcttcttg ctgttagcag
      361 gaagaataag ggaattctgc tccttttaaa gcttggagtc cattttgata taattggttc
      421 cagaattatt tatgacatta attgctgcat tatcgactgc ctgtcagctc ttctggcagt
      481 tagtccatct ttctcaccac agaaagccag ctcagcccaa actagactga caagctaatt
      541 atacccatct tccccttcaa tgacaaatgc tgctcatcgg aaacctttct agaaataagc
      601 tttcattctt tccccttttt cctgagccag acgcaaccaa tatctcaagg tacagatcac
      661 agctgaaact ctgctcacag ggctattagc tctgaacatc tcacttgagc ccatcttatg
      721 ttatcaaact gtatgtcatt gcctgatgct agttttcagt ggatgtgcac tgggccatag
      781 ctgtcactca aagccgtggc agacggagca aacctga
//
LOCUS       KCOD01002597             717 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 289027pyr ultra-conserved element
            locus uce-6558, sequence.
ACCESSION   KCOD01002597
VERSION     KCOD01002597.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 717)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 717)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..717
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="289027pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>717
                     /note="ultra-conserved element locus uce-6558"
BASE COUNT          232 a          134 c          127 g          224 t
ORIGIN      
        1 aaaagggtta catcacacac agacctcagc tattactccc tgaatgctac ctcgctgaaa
       61 taatccagtc acaaaccttg ttctgaaagc cacccatgag caggacaggg ccacttatga
      121 gtttctgtcc agagtgaaca gggaagtcac agccctccag cctatgttat ttctcttctt
      181 agaatctggg aaggagccag agattctaaa caaagataac gtataaagaa gtggacacga
      241 cattaagaaa taaaatccat atcagggcaa taatggtcat aaagcaataa agtggatgta
      301 taatagttcc tggactttta atttgtgact aatttgttgc acaatgaggt tgcaattttc
      361 taattgtgat tgccatttta attttactca tggctgtgca actaacaatg tatagtctag
      421 taattaaaat taattgtacc ttcacctgca tatttctatt aggctgttaa atttagtcag
      481 taggctcaat gattttgttc tctgagagat gctgaattca tttcatcgag cccaattatg
      541 ttacactctg taattcctgt atgaaaaaca agcattttac tttaatatga ggagttgcta
      601 caatcacatt ttttaaattg catattcaac accagaatat aggctgacag gagatacatg
      661 caactgcttt ttataaatag cctgcttgtg gggtaccttt tacaaaacta gcaatta
//
LOCUS       KCOD01002598             659 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 289133pyr ultra-conserved element
            locus uce-7208, sequence.
ACCESSION   KCOD01002598
VERSION     KCOD01002598.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 659)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 659)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..659
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="289133pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>659
                     /note="ultra-conserved element locus uce-7208"
BASE COUNT          214 a          112 c          111 g          222 t
ORIGIN      
        1 gattgattac tcaaaaatcc tttcaagagg aggaaaaggc tccactcaag cttcacttcc
       61 taaagattta gcttctgtgg agaaaaacct cacattcagc tacattgagt ggtcactcaa
      121 tttgtgtatg cattaaatag ccaaatatat tcttttcagt atttatgaat agtttaattt
      181 attctgctga aagagcgata actatcagaa atagcaatag aattcacata atgagataag
      241 aatactagaa attttagtac agtccattat tcattcaatt cctggcagcc tttatgatta
      301 caaatcactt gattgactaa ctagaaaagt gaattatgaa tcaggttcat ttttcctggt
      361 tgagagttgg tacatgttgt aactcttcca cttagtgata tatcaagttc ttgtaacagt
      421 aataagagat ataatcaact ctttatttca ggacaaataa attggctttt caaaagtgaa
      481 atgtggttgc taacatttta acagtgcaca atgtaattcc ttcctgctat tctcagagtg
      541 caatctgctg tgatgacaca gcttttcaat atttgacttt gctgaaatta ttttaggagc
      601 ctcacaccct caatccaggc atactgatct cagtgaaaat ttggtgttgg gtctaagag
//
LOCUS       KCOD01002599             387 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 289238pyr ultra-conserved element
            locus uce-7449, sequence.
ACCESSION   KCOD01002599
VERSION     KCOD01002599.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 387)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 387)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..387
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="289238pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>387
                     /note="ultra-conserved element locus uce-7449"
BASE COUNT           95 a           88 c           96 g          108 t
ORIGIN      
        1 gcgcggcggg tggagggatg gggccggctg cctgcgattg gtaaagctcc acgaaggcat
       61 ctgccagcag gacttcagag gaatgtgaaa ccaaatcatt tagaagttaa agatagacgc
      121 agaatacaca gcatcttttt aaattcatcc ttctgtcagt ttgcctctgt ctcctctata
      181 atattcccta acatcattct ggatacttgg gaattactaa ggtggcaaaa gagatcatgg
      241 tgcatacagt agggtaagta ggaagccctc tgcatgcatt tgctagggtg gttcctctgg
      301 gctttcctgc taccttcaga gcactctcct ctaggatgag gtggatactt ccgttttccc
      361 cacatggagc atttgaacgt tattcct
//
LOCUS       KCOD01002600             614 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 289336pyr ultra-conserved element
            locus uce-3020, sequence.
ACCESSION   KCOD01002600
VERSION     KCOD01002600.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 614)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 614)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..614
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="289336pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>614
                     /note="ultra-conserved element locus uce-3020"
BASE COUNT          163 a          151 c          144 g          156 t
ORIGIN      
        1 gtgccagcag ccacagcaat tctttcatct tggcttcaaa gtggtgctga gaggaggagg
       61 ggggcatcta atgaaagaag ggaaaacaaa caaacaaaca aacaagcaca aaacggggga
      121 ggaaatgaaa aatagctgtc tacctttcaa atctgagtgt tgcctgcagg cacgctctgc
      181 agtggtcagc ttcagcccct tgtatattgc cacttcccat gctgggaaga ttcttgtcat
      241 ccctcacata ttttatccgc agaaaaggct gccctgccct gtgcttggtg attgaggctg
      301 tgcccctggt gtgccacact atcagtggtt cccaaggctg cctagcctgg gaaaagctgc
      361 atggaaacgg tccaaaatca gcattacatg cattattgtt cttactctct ctgattagag
      421 tgcacacaat gaaaacaaca gcaacagcct cgttttctag ctctcctccc aacacagggc
      481 tgttcttagg ctgctcagag tcttcataga aattaactgc ttctgtgctg gtgcatccca
      541 gcagcttctc tgggaaagag cttagtctga ctgggagtat cttcaaaagt gcctagctga
      601 cttgtgaaat ctca
//
LOCUS       KCOD01002601             419 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 289447pyr ultra-conserved element
            locus uce-788, sequence.
ACCESSION   KCOD01002601
VERSION     KCOD01002601.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 419)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 419)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="289447pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>419
                     /note="ultra-conserved element locus uce-788"
BASE COUNT          124 a           63 c           71 g          161 t
ORIGIN      
        1 ccactcaaat agtaaaactg actgattttc atatatggct ctgaagactt taaatacatt
       61 tactggcagg ctactgtagt agacacatgg tgtcagcttt taattgtaac tgtcttgcag
      121 agtggtgttg ttttaatatc ctgtatagat ttttatgtaa tacacttact tgcaggcagc
      181 ctgaagcaag aatcaattct gtgaaggatt cttcttttgt taaaagccaa tcttgtttta
      241 atgatgcatg aagaaatatt cgagcattga catttttctg tcaggtttct tttgaaaaat
      301 caattaagat aatactgctt tgacctagtt atctagttaa tgcttattag gaatgtaata
      361 tgatttactg tcagcataat aatttttgta tcttatccca ttagcttgtg catatttca
//
LOCUS       KCOD01002602             647 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 289552pyr ultra-conserved element
            locus uce-7804, sequence.
ACCESSION   KCOD01002602
VERSION     KCOD01002602.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 647)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 647)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..647
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="289552pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>647
                     /note="ultra-conserved element locus uce-7804"
BASE COUNT          199 a          118 c          129 g          201 t
ORIGIN      
        1 gagaggaaga aagaacaatg tgcaatcggc actgcattag agatggaaaa agtacttaaa
       61 gcctgcaaca ttcatcaagg ctgaatacat aaatgccaca ttttgaataa gccaagcaaa
      121 agacaatgac aaaggaaagg cgcgttgctt caggaatctc tatcattttc atttgctgct
      181 gtcaggaacc tgttttttgc ctctcactct atcagccatt atagcattaa tgaagtaacc
      241 tcacatagtt attgactggc ttgtcagagt ccctgcctga tcccttaata gaaaccattg
      301 gtcttcagtt aaaaatgggg tgagctggga ggtgctgtgg gcatgtgctg aatttcaagt
      361 gcactcctga ggttatcaaa agccatgaaa tgcaaattat tatatttttt aaacacaccg
      421 atttcatgca actgagcata taaaattgac taatactgta ctttatgcat tcctaataat
      481 gtttccaaat atgctctgca tatgatcttt ccccagaaag ttgtgggtgg tatttgaata
      541 agcagaaatg ggcctagttt tattttgtga ataaagtagt ttcctggatg ttgcaagtct
      601 ctgttccttc taatataagg taatgtttat gcactgtctg ttcaaac
//
LOCUS       KCOD01002603             807 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 289663pyr ultra-conserved element
            locus uce-7322, sequence.
ACCESSION   KCOD01002603
VERSION     KCOD01002603.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 807)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 807)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..807
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="289663pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>807
                     /note="ultra-conserved element locus uce-7322"
BASE COUNT          241 a          143 c          173 g          250 t
ORIGIN      
        1 aaaacacaga aaatctgatt atcataacac gttgcacagt gagaggcaga cctcacataa
       61 tgtaaaatca atccatctaa atctctttgt agcctgagca atttctgaga tgggcagcaa
      121 agctttagtg taaggaagag tgagctctgt gtgtgaatat gcatgtgctg aataacccgc
      181 ctgcctgggg tggaatggct aattctctaa tgcacgtgta ttacctaagc ccctttttaa
      241 aagttttggg ttttcatgta tatgattaaa attgttgttt gcagtgccag agccaatttc
      301 ttgttctgga ggtgaggctg cagcttgctg tgctgcaaat gtcaccagcg aggcatttgt
      361 tagggctgca ctgcatgccg gttaatctgt ttacttatgc aatggtggaa atgtgacctg
      421 gctattgtgg tgattaacag agtcaaatat cctcacatta actagtgagc tgggcaatca
      481 ggctggatta ttgttacatt caatttaaat tacagtggca tgacaggtcc tgaggtattt
      541 agtaacggat ttcacagcac agatatgctt catgtgtaat gaataaactc tggagagcaa
      601 caaaaggaaa aaaataaaat aaaaaggtat tttatgatca ttgtgaaaaa tttatggagt
      661 gtagctggca tgaaattcta taaaatgaac tggctccaac cagtcccact tttcttcctg
      721 ctgcttatga attattatta ccgagtcctc ctatgtttac tcattagcat tgaacccttt
      781 gcaaaactgt gattcaaaat tgaattc
//
LOCUS       KCOD01002604             525 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 289769pyr ultra-conserved element
            locus uce-6223, sequence.
ACCESSION   KCOD01002604
VERSION     KCOD01002604.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 525)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 525)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..525
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="289769pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>525
                     /note="ultra-conserved element locus uce-6223"
BASE COUNT          161 a          118 c           87 g          159 t
ORIGIN      
        1 ggctcacaca gacacagtgg gatatatatg tacaacataa taaacccctc cctaaagaag
       61 caactgtata tccaaaggga tacagaatca gaattgtaaa aatcatagtg aagtttgctt
      121 gatgtaaagc ctgagatttt cagttggttc ttctgcaagg ctgcaacacc tgccagatat
      181 gttaaactct aattttttat ttctttttct catttttgct acagtcttta gactaagcat
      241 gcaagacata caactaagtg caactgagtg aaatgtattt tttatttact cattccctaa
      301 cagtttggac tgaggtatgc gtactaacag tttctcatgc tgttatcttt actcatgtct
      361 agctacacat gctgagaatg aactaatcta ccagattttt atcccccttc tgaataccga
      421 actaaccagc aaaccactca gtttcgaagc acagggctca attctcaccc tgtctggcta
      481 ccgccggcac gtcacgaagc tgcctggata taatttaaac caaaa
//
LOCUS       KCOD01002605             728 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 289875pyr ultra-conserved element
            locus uce-7207, sequence.
ACCESSION   KCOD01002605
VERSION     KCOD01002605.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 728)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 728)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..728
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="289875pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>728
                     /note="ultra-conserved element locus uce-7207"
BASE COUNT          207 a          155 c          136 g          230 t
ORIGIN      
        1 aaaggcaaat tgcttccctc aattacgttt tcttccttgt tggaccaata cacacaaccc
       61 agaattaact tactgcagat gtcattgtgc atccctggtg ggttctttga agtcccaaga
      121 ttttggggtt tgtcaccacc caggtatggg agcagaagcc attgtctctc accatctaat
      181 caagataata attacaggca gtggatctgg agcgaagaag aggaaaaagg cttttcaatc
      241 actgcctctg catttcaatc gaagccccac gctgtacaac actggagaac aaggtgtaaa
      301 tcagcttaag aacatagttc tgcattcaat gcattgtggt ttacagctcc caaatgacct
      361 tcatctatct tccttagctg tagaggtgta taattgaact aaagagagcc ttgaataatg
      421 aggttgagag tggcagctcc gctgctgttt cttaatagtg taccagcctt gcactttgtt
      481 ttctgatatg taacaaaata ctgtagtggg tccaattctt cagggtgaca cttggtgata
      541 gtccctcttt taaaatagaa aagagcaggg gttttgcctc ctataaatct ttggctcaac
      601 taggctccca aaaatacaat tatatgaacc attttctatt caatatctgc ccacaaaagc
      661 tcagagagac aaatagcaat tatctgctct tctttcattt ttttttcatt tttttaactt
      721 ttcatctt
//
LOCUS       KCOD01002606             508 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 289984pyr ultra-conserved element
            locus uce-4113, sequence.
ACCESSION   KCOD01002606
VERSION     KCOD01002606.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 508)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 508)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..508
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="289984pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>508
                     /note="ultra-conserved element locus uce-4113"
BASE COUNT          144 a           71 c          104 g          189 t
ORIGIN      
        1 ggtttcacaa aagagaaatg cctttttttt cctttaaaag gattgaaact caagaatgta
       61 acatatcagg agctcttgtg tcctacagta aagttttttt tctatgaaag gtgaggtttt
      121 taatatacaa aaatgagcta atgatgcttc agatgatata tgtaatgtat tctttttatt
      181 ttatgtgtag atggctcttg gacaagtccg agcagtacaa cacactggga gggaatgccc
      241 tctcctttta aaggcaggaa tttttattta ttacctgtgt ttagtatgta aacatgacat
      301 aaactagtgg atctttctgg attgacacag atatttcttg gaatacgtgt ctgagttttt
      361 gctgcacata aattatgctg gttcacgttt attttggggt ggaagcatct gaagtttacc
      421 ttttcagata taggttaatg atgcctttta tttctctact gtacagaaag gatttggaca
      481 atagtgatgt agttgctttg aatctgct
//
LOCUS       KCOD01002607             689 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 290095pyr ultra-conserved element
            locus uce-6591, sequence.
ACCESSION   KCOD01002607
VERSION     KCOD01002607.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 689)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 689)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..689
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="290095pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>689
                     /note="ultra-conserved element locus uce-6591"
BASE COUNT          211 a           89 c          115 g          274 t
ORIGIN      
        1 gaaccaaatg ttctaggttc atgttttatt gcattaagtc gtgtgtatgt gaagtgtcct
       61 ttgaccagaa ggttatcagt atatttttat aaatttgaaa ttcattgtgt ttttcattct
      121 tagggtatat gtgctagatt tgaaacttaa catttttagg cacagatgga aaaagttatt
      181 ggctccttga aaacatatgg gacaaaatgg atcctcaaag catgtatgta cttacaaacc
      241 aagctgtaga gatcaagaaa agaactttgt tgttgatctc aagatttcta aattgtcaag
      301 atttatatgg agttgtggtg gaactagtta acacttagag cttttggtat gtaatgacta
      361 tttgctatgg actgatatta aatgtttcaa aggattgcgt tcttaaactt tctggatttt
      421 tgttactctc ctcggatatt attaagaaaa tttctttgct atattacatt aaaaacataa
      481 gaactttggg tctcgtattt attttcactt gttttactaa ttatttacag aacaccgttt
      541 taactttttt attttataaa tgtgtagtat tttaaacata tctttaaaaa ttgttcaatt
      601 ggaactacat taacttcaga tttgttttta ttaggaaata cactttttcc atgttggtgc
      661 acagcactta acagaaatgt ttgtattcc
//
LOCUS       KCOD01002608             527 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 290206pyr ultra-conserved element
            locus uce-6800, sequence.
ACCESSION   KCOD01002608
VERSION     KCOD01002608.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 527)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 527)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..527
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="290206pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>527
                     /note="ultra-conserved element locus uce-6800"
BASE COUNT          146 a           86 c           93 g          202 t
ORIGIN      
        1 gagccagagt tcatctttgt agttagtatg ttgagctttt atttgtcgag attgtttagt
       61 cattacgata aaacatatta taaaaatttt gataatgaag agttaaaaag ctcttagtgt
      121 tttcttttta taagccacct gttgccttag atgcataagt atatgaattc gaacaaagtg
      181 ctcatcactt gtcagccatc agtggcagca taaaaattac ttgtggtgct tgctttgcaa
      241 gaagttcttt tgtgtttgtg acatcagctt tgttttatac aattaaagta ttacacgcta
      301 gaataatcta aattgcaacc actaaatggt gatgtagttc ttttttcata gagctgaatt
      361 tgtttactgg ttgtatacag ctattgacta ctgtttaaca tgacatgtcc cttttgccta
      421 gaacagtctt tggaaaaggt gtttttttgt gtcctgttct tgtctcccac ccctctccat
      481 tatggagagc ttttctcgca ctttttttaa caagtagata aaaatac
//
LOCUS       KCOD01002609             575 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 290316pyr ultra-conserved element
            locus uce-5642, sequence.
ACCESSION   KCOD01002609
VERSION     KCOD01002609.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 575)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 575)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..575
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="290316pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>575
                     /note="ultra-conserved element locus uce-5642"
BASE COUNT          171 a           92 c          111 g          201 t
ORIGIN      
        1 ttttgtaaaa tctaggtctt aatttcctga atgctcttac tagttctaac tttgtttatt
       61 ttggccttag gttgcattag ataattattt tttatttaag agatgagtct tatgttgcaa
      121 gaaacagcac taaatttgag tctttaagga tgccatactc cagccataac attttaaagc
      181 aacatttgtg cctgtctcta aggtttatgg aaagctcaga agcttacttg attttttttt
      241 gttgattaca gggctttttc cgcaggagta tccagaagaa catggtttac acatgtcaca
      301 gagataaaaa ctgtgttatc aataaagtta ccagaaatcg ctgccagtac tgcagactac
      361 agaagtgctt tgaagtggga atgtccaaag aatgtaagtt aaacaattta ttgtttgtca
      421 tatctccata tatgtggcaa atatgcaatt atgtgattga agccagtgga aaggagtatg
      481 aatttggttt agacctgtat tctgagtcct taactctgca acctaaaagc tttgtattct
      541 tctgcctgga ccctctctga aaggtgaaat gagat
//
LOCUS       KCOD01002610             690 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 290429pyr ultra-conserved element
            locus uce-1750, sequence.
ACCESSION   KCOD01002610
VERSION     KCOD01002610.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 690)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 690)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..690
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="290429pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>690
                     /note="ultra-conserved element locus uce-1750"
BASE COUNT          203 a          156 c          135 g          196 t
ORIGIN      
        1 tgaatcccta aaattaccat aagccttgtt ctttaagttc aggctaatga gtcccatttt
       61 attcatattt ttgaaggggt ttgatcgtct ctttgtttat tcatcaccaa agtctatata
      121 atttcctccg ttgtttattt acaatctctc cagcaatatt tatttagggc cttggcagga
      181 gcggaggaga gcagctctcc tgcattcctc ccgtcccatc tcagcccatg gagctctttt
      241 gacagacagc ataaaaaaaa tctgcataag gaaaagtaac tgacagctgg ggtcagactc
      301 tctctgttta atgacactgc cagttacaca ttttgaattg tttaaatatg agtctacagc
      361 ttcaacgatc atcatctcac tggttccact tttcataccc aacagccagg aaagtgacac
      421 gtaattacac acttactgat ggtatcgccg gggccgataa ttaaaactgc cacgggagga
      481 ttgctattgc gaggctacag ctgggatgtt gtcaagaggt agaaactcca gcagctttta
      541 acgctatctt cttacaggtg gacggtgaag gaatagaaag gcctcagcac atcattcaca
      601 atgtctcgca caaatgaaga aaatctatta acaatccaat aagtgaaata caaacacgct
      661 gacccaaggg ttaaactgcc tgcgtggaca
//
LOCUS       KCOD01002611             529 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 290535pyr ultra-conserved element
            locus uce-6043, sequence.
ACCESSION   KCOD01002611
VERSION     KCOD01002611.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 529)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 529)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="290535pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>529
                     /note="ultra-conserved element locus uce-6043"
BASE COUNT          154 a          102 c          108 g          165 t
ORIGIN      
        1 aagaattaaa atgtgtttta atttgaaccc agtaacggta ctactacatc ttatcagata
       61 gcatgttaat atatgtgcag tgtgtgtata taagcagtct tttccttaac cagttaactg
      121 gagagttcat tagattccct atgaggtgca aaagagggga aggaagccag tgtggagtta
      181 ttcattgtct tatgactcaa ttctaatcac ttcagtcagt gtgactgaca gagaaatgct
      241 ttccactgtg attgagagta ttgatttctc agcccctttt ggggcacact ggagagacac
      301 aatcagagcc ttcactttca aaaaacctct tcatctgcct taatcatctg atcgataatc
      361 agcatcagtg ctggggatct tcaacaaagc cttctccggt gtctttattt tctttcctcc
      421 attgggctac aaatctgctg agtcaaggtg atcgtaatag atcagaaaag tgaacagtaa
      481 gcaacaacac tgatggcttt tagtgacgct tgttaggcat ataaagttc
//
LOCUS       KCOD01002612             596 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 290645pyr ultra-conserved element
            locus uce-5599, sequence.
ACCESSION   KCOD01002612
VERSION     KCOD01002612.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 596)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 596)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..596
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="290645pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>596
                     /note="ultra-conserved element locus uce-5599"
BASE COUNT          202 a          113 c           96 g          185 t
ORIGIN      
        1 atccaatgtt ttagtaaaga actgaccttg aatcgtgaaa caagtcactc ttacactggt
       61 ggtcttctcc tgtccaaagc aaaagagagc aagaagcaca cgcacgcggt gcctgtgcac
      121 ttctgccact gacacagctt aagttcatgc acatttttat tgagtagtaa tataaaatgc
      181 ttctttcatt gttacaagtg catgctttga ttgccaacat tttgaagtca aattacaaag
      241 gcaaggctgt aggctgtagt gaattacttg ggcacttata caattgttaa aaaatatcaa
      301 tggactgttt gttttgtttc cttttctttt ttagaatgaa ccagttgaaa cccgtaactg
      361 atatacaaag ggaaaaaagt gaaaaaatta cacattttgt ggcacatgac aaaacagaac
      421 aaaatgacta aaccattatg acattaacag ttatcatgca tttagaattt cacatgtaac
      481 tacaaactta tttaaatttc acaaggtttg ctaaacatgc tacccatcta tatgtgcact
      541 gacaagctta tgttaaaaac tttaagaata ctctcccccc ttagattttt caaagc
//
LOCUS       KCOD01002613             664 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 290758pyr ultra-conserved element
            locus uce-6684, sequence.
ACCESSION   KCOD01002613
VERSION     KCOD01002613.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 664)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="290758pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>664
                     /note="ultra-conserved element locus uce-6684"
BASE COUNT          140 a          164 c          160 g          200 t
ORIGIN      
        1 aacctgcaat tctgggcagt ggtcccctcc tgggggctgc caaatggatg ttgtttagct
       61 tttgggggga agatggatac catttgctga gataggtgtt tgctgcccag gcagcccagt
      121 gtatttacag cagctctgca aggtgtgtat gtgcatgtac atgcttgtgt atgcctttat
      181 ttccatgctc cggctgcctg cctctgattt aagggcaggt tttattcccc agctgcctca
      241 gggctcctct tttctgattg cattaaagtc tccataattc tcccctcatt aatgattggc
      301 atatttttac ctctcactaa aggagcttgg aggcaactcc cttggggccc tgctcgccaa
      361 atgaaacaat ttcatcctgc tccagaaacg cattaaaaag ggtttgtcag gatcttatcg
      421 ctagttaggg aaagctaatc aaattacttc tatttattag ctgccgcagc aatgtgtcat
      481 tccatcaagt acaggtagtg ggacaggcag ggattgcgtg gtgagctctg tgcatccaga
      541 gctgctgcct tgatctgcac aacagcatct cttgccaaaa gagaagcggt gaacttccca
      601 gtgacagtgc ttcgggacct cttgtctgct gcccctcttc gttcgtcctt tgtcgtagca
      661 ttcc
//
LOCUS       KCOD01002614             577 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 290870pyr ultra-conserved element
            locus uce-7484, sequence.
ACCESSION   KCOD01002614
VERSION     KCOD01002614.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 577)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 577)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..577
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="290870pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>577
                     /note="ultra-conserved element locus uce-7484"
BASE COUNT          154 a          110 c          132 g          181 t
ORIGIN      
        1 tccaagcatc tgatgctttt atgtgtttct ttgtaaaaag ttacactgtc acaattcctt
       61 ggatggtaca cagtgctctg agcttctgcc tgcacaataa ctggttttaa acatttctgt
      121 ttaatcaaga gtgaagtaaa tgtcagagat tcaatgttct agatcagcag tttccaacac
      181 tgatacatct taatcaagca attaggtgcc ttgttattgt ttggtgtttt ccaagctgga
      241 gaagggaaca gatttgctgc tttgctctga tgactgctag cagcagtgtt tgttgttaac
      301 agagacatgt acacctaacc accagttggc aggtgttaac actttgttac tcgctattcc
      361 cacatgctga ggattgtggg aaagctgtca agctctctgt cttgtgtact cagcttttac
      421 aatcaacatc aacaagctct gaacaaattc agaagctctg taggaatgca gcgatgcagc
      481 actagcaagg gaaacaatag gactggcttt gatgggagct gtggaaagtt tgtttcctta
      541 tcttggcttg gaagcaggta gatggagact gagtgct
//
LOCUS       KCOD01002615             648 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 290977pyr ultra-conserved element
            locus uce-3410, sequence.
ACCESSION   KCOD01002615
VERSION     KCOD01002615.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 648)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="290977pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>648
                     /note="ultra-conserved element locus uce-3410"
BASE COUNT          210 a          128 c          110 g          200 t
ORIGIN      
        1 actttccagc tacactgtaa tttcttttca agaatggttt ctatcatctc aaaactcgct
       61 ggctaagaaa gtttaacttt gtatgttgct caaaatcatt ccagcatgct tatgatataa
      121 aagaacacgg tacattttat ggtacaaaaa tcaaaggttg ctcttcctgc tactggtttt
      181 actcagcagt aaagagaaaa ccttgcaagt gttgtttaca cagtactaaa tccttgtaaa
      241 gtcatactga aacaagcctg ctatctgacc tagcccttag ggctacttaa acacctgtgg
      301 atttatagag ttcagatgtc tacaaggtct gtgttgaagt tcatttccaa acctgtgccc
      361 catgtgaagt cctttgttgg cacagttaag ccattactac ttgcttctgg tttgtaaggc
      421 aatcacatta tgaaacagaa agagctcaga attaagaaaa cttaccttta tacacatgta
      481 aatgtacata acagctgaaa gctcaatgtt tttatttgca aaagctttaa gatcaaaaca
      541 acacagggaa agagaggagt tatcctcatc taattgattc cccagcagga cctatacatg
      601 taaaatacat atcagaccat caagttcaag tagagtatgc tttgttct
//
LOCUS       KCOD01002616             849 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 291087pyr ultra-conserved element
            locus uce-1783, sequence.
ACCESSION   KCOD01002616
VERSION     KCOD01002616.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 849)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 849)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..849
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="291087pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>849
                     /note="ultra-conserved element locus uce-1783"
BASE COUNT          275 a          167 c          153 g          254 t
ORIGIN      
        1 ccccagctat caaaagaaag gaaatccata tattgtgcta gtgacaaaac aatatgcagt
       61 catttgagag ggtctcttta ttagaaacaa acatacttta attagaagaa atatgttaat
      121 ttcaatagca tattcttcat atctctgccc ctcacaccta cattcttttt atggacagta
      181 caaaggagga taatagatgc ctataaaagt aactagtgaa attctgcatt aggataatct
      241 gtcacccatt tccatttttt ctgaagaaag caagcataat caaaagccta aatgacaaag
      301 agttgacagt aagattctgt agtaaatgat tccagagtcg ctggcctgcg gagatgctga
      361 agaagtcccc agcagacctg attaattcca gtttctccag ctgccagggg agcagaggct
      421 aagcagtttc acagagagga gcctattacc actactaggc tgaaatagat ctaatcaact
      481 cacagccgct caaaagaaaa ctttacaggt ttagctcact aaggcagcgc tttaaaatga
      541 tgactacaaa ggatcatggg agtctgaaag catttagtct ttattgcagc tcaaggaaat
      601 tttctgctgt ggttaggcca tgctaattta ctgaacatga caatgcctcc cagatcgtat
      661 gacatcattt caataatggc tctcgtcctc ttagttaaat atttctatta ctacaaattc
      721 tgaatacttc atttattgaa atgccatcta tcttaggatt aattaggttt actattccaa
      781 atctatgggt agcctgcttt atcattcagt ttgaatgatg atgctgcata atttgccatg
      841 gcactgtca
//
LOCUS       KCOD01002617             875 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 291199pyr ultra-conserved element
            locus uce-246, sequence.
ACCESSION   KCOD01002617
VERSION     KCOD01002617.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 875)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 875)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..875
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="291199pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>875
                     /note="ultra-conserved element locus uce-246"
BASE COUNT          214 a          241 c          193 g          227 t
ORIGIN      
        1 agagtatttc attgtacgca cctaggaaat ggaacgtgtg ggagggaaca atgagaggca
       61 gttggtagtg tagctgagaa agctgatccc tgacaccttt tcataatgga tcctctctcg
      121 cccttaagtg aactgaaaat ggtgcattgt gtcattaaaa tgtactaatc ttttctcttt
      181 tccatcccag gaggtgaatt agttatccct ctacttgtag aagacccttt agatatccct
      241 cctattgcta ctcgtgcacc tttcattaca cttcccccta cctttcgccc cctcctcacc
      301 attattgaga ccaccaaaga ttccctgtcc atgacctctg aggcggggtt accttgcttg
      361 tcggaccaag gcagcgatgg ttgtgatgat gatggcttgg tgatatctgg gtatggctca
      421 ggggaaacct ttgactctaa cctaccccct actgatgatg aagattttta caccaccttc
      481 tccttggtaa cagataagag tctttccact tcaatcttcg aaggtggcta caaagcacac
      541 gcacccaagt gggaatccaa ggactttaga cctaacaaag tctccgaaac tggtaggact
      601 actaccacgt ctttgtcccc tgagctgatc cgctccacag cttcgtcctc gactgggatg
      661 gttcccaaat tgccagccgg caaaatgaat aaccgtgagc tcaaacccca gcctgacata
      721 gtcttgcttc cgttgcccac tgcctatgag ctagacagca caaagctgaa gagcccgcta
      781 atcacttccc ccatgttccg taatgtgccc acagcaaacc ccacggagcc gggaatcaga
      841 cgggttccgg gggcctcaga ggtggtccgt gagtc
//
LOCUS       KCOD01002618             381 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 291310pyr ultra-conserved element
            locus uce-7489, sequence.
ACCESSION   KCOD01002618
VERSION     KCOD01002618.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 381)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 381)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..381
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="291310pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>381
                     /note="ultra-conserved element locus uce-7489"
BASE COUNT          122 a           70 c           68 g          121 t
ORIGIN      
        1 tagctattgc tggcttgcca gagatcttga acttgagaaa ggttagacat cacaatgctg
       61 aagcagtttg tgagcatcag cagatttagc ttgtaatttc attgatctat gtgggcttgc
      121 tgtttgcaaa ccagctgctg cactgtttcc ccacagctac tgatctgagt agcattgatt
      181 ttttccctta cattaacata gcattacttc tttaatgggc attaaatgac tggatgtaaa
      241 tacaaacagg gcttcaacaa ccaaagagaa aaaatgcatc agttcaaaga actctattaa
      301 taaaaaaatt aaaagcatga gttattgatc aagataaatg ctattttcca atttcctcac
      361 tgtgtttcca aaatgttgca t
//
LOCUS       KCOD01002619             665 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 291417pyr ultra-conserved element
            locus uce-5297, sequence.
ACCESSION   KCOD01002619
VERSION     KCOD01002619.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 665)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 665)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="291417pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>665
                     /note="ultra-conserved element locus uce-5297"
BASE COUNT          162 a          133 c          132 g          238 t
ORIGIN      
        1 ctctgcacta acattagatt tgtgttagcc tgcctcatag agtcactttt cttgcattca
       61 gtccaggtgc aagttgaaat tgataaaaac tggcagtgtt tgttttattg tgaatgttat
      121 tcagcctgat atttagttat atttccatgt ggatttgtaa tgtggtttta ttttactcct
      181 gtgattagtt tctgtttgtt ctaatttctt cttgactctt tcttgacctt gaggtgaaaa
      241 aacacagaag atgtattccc tcaatttaat gccagtctga ggtgtttctc ctgcatcatc
      301 agatcaatga aaagtaaata gcctacattt cttgtttcac agtgcagtat tgatctttct
      361 tcagcttttg ctttcctttt tccctgcgtc ttgtgtcttt caacccctgg gaccaaagtg
      421 attgccatag attggacaag ctaacaagcg catgataagg aactcgtgtt ttgtggtata
      481 ctcacattct catgcctggt atataaagcc cggacctctc cgcatttaaa gagaggtgcc
      541 attttgtgta tggcacaagt cactgtgaaa ggcactggag cagcagagga ttttattctc
      601 cacaccaatc ttttattgct acagctggtg ccaagctggg tgaggacatt actcctctga
      661 aaagt
//
LOCUS       KCOD01002620             587 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 291524pyr ultra-conserved element
            locus uce-1941, sequence.
ACCESSION   KCOD01002620
VERSION     KCOD01002620.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 587)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 587)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..587
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="291524pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>587
                     /note="ultra-conserved element locus uce-1941"
BASE COUNT          176 a          107 c          108 g          196 t
ORIGIN      
        1 cagtgttaga gcttttgctg aaggtttacg agtctgtgta aacagcacgt ctgccataag
       61 gagcagtgaa gtctgtagaa tccttgtcta aaactgtcct ggcattaaag tttgctgtgc
      121 aaatatcaca taataccaga gacagctgaa atctcctatt taggaattta tggaacttat
      181 atgtttgcag gcgtcagaaa gtccttttta tacagcccca ctgcttcact gtacaatgtt
      241 aatgcactct gcttgaaaag ccgtaataaa ttatattttt aatgctctta ccctggcttt
      301 cttaagatgc atacattctt ggcaaacaat caataaatag ggtaatcatg agcagaggcc
      361 aaagaatttg ctgaagtgct gtttttccat ttttaataga taaagatcta acaatacgga
      421 ctgctgtgtc tgttcatttc aggatcaata tattctttgt tttcggcaaa ccgaggaaaa
      481 aataaatgat tgtacgataa atgttatgca tcagacacaa tgaaattcct ctgccttcta
      541 actttgtgca tttaatagtc ttggttacat tttgcacttt gcttagc
//
LOCUS       KCOD01002621             612 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 291633pyr ultra-conserved element
            locus uce-4546, sequence.
ACCESSION   KCOD01002621
VERSION     KCOD01002621.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 612)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 612)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="291633pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>612
                     /note="ultra-conserved element locus uce-4546"
BASE COUNT          202 a          104 c          111 g          195 t
ORIGIN      
        1 ttacatgctt ctctcctaga tctatctttc cctttagtat gcaaatgcac aattaaaagc
       61 actcaacagg tagagatgaa tatgctaata tagtgtgctg ctaataatat tttcattaat
      121 gtatgtggaa gtacctcaaa gagcaaagag atgctggaaa gttataatag ataagaatct
      181 gctctctgcc tttatgtaag acaatagatt ttgtgaatat tctgcttcct ctccaggcag
      241 tgagctagta tggttaacca aaattgttga gtaattgttc tgtggttgag aacaaaatgc
      301 tgaattaaac tgttcccagc acaataattg tgtgattaca gcatttatgt tgctggccaa
      361 aagaacagtc attaggtttg gaagacttac caaaaccaca ggcagaaaaa aaaatgcaaa
      421 tcacatgtaa attgtcctct aatacctata gtggcttaaa aattggtcta ggagtatggt
      481 atgtttatat ttaaaggcag tcaagccagt tgtacattca agaactactt gagactagga
      541 agaaaatacc caaagattat tcattttcat tatgctgtac ttttccccct ctagtgagat
      601 cctgcttttc at
//
LOCUS       KCOD01002622             671 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 291743pyr ultra-conserved element
            locus uce-4782, sequence.
ACCESSION   KCOD01002622
VERSION     KCOD01002622.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 671)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 671)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..671
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="291743pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>671
                     /note="ultra-conserved element locus uce-4782"
BASE COUNT          183 a          123 c          161 g          204 t
ORIGIN      
        1 atggtactga gctctaaagg gctgctcaaa ggagctaatt tgatatgctt gatgaacaga
       61 ctgtgcctct gctttcttct gagaagttac ttgatccaag aagtcctgtg tagaggagga
      121 agaagaatga tttgcctcat cacctgaaaa gggaaaaggg tgctgagaat caccaaccat
      181 tagtccaaag tgagacttgt ctggagttgt tcttaatgga gagttcattc ccgaccgaaa
      241 gctattgacg ggtatagatg tatagacctt ctccatggaa ggaaatgctg gctgggttgt
      301 aagagtctgg ttatcagtca caaaattaag gctcgggttg ttcaaatagg catcattttg
      361 gctagttctg tccaaagctt gttgtaaaaa ctttgaatat tcttgtaaca tactagcttt
      421 atctgatgag gaagcttgag agcttgttcc aaccgtctca gattgggtca cctcagatac
      481 ttcagaggaa ttgatggata tactggaggt cacttccgtg tcagccacac tgaaagagat
      541 ctcatgctgt ccattagcct tgtgtgaata atgatctaac agagtttgca gtacctcatc
      601 tggaatgaca tttttgtcat ggttaccttt aatttcaaca ttcagcgcct gtgtgtctag
      661 tattgaggct g
//
LOCUS       KCOD01002623             607 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 291853pyr ultra-conserved element
            locus uce-8014, sequence.
ACCESSION   KCOD01002623
VERSION     KCOD01002623.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 607)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 607)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..607
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="291853pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>607
                     /note="ultra-conserved element locus uce-8014"
BASE COUNT          190 a          128 c          101 g          188 t
ORIGIN      
        1 gtccttcccc atcttccatc tgcaaatgtg gttggaatat agttttaagc aggatgaagg
       61 attaaacaaa aaaaaaataa tgaaaagtga aaatatacac gccaaagcat ggtcaaatac
      121 attttgcctt gtataaactt cacccagtct acgtgggttt taacgtattt ccatgacttt
      181 aaatgagaaa acatcttaaa gcacagccca tgggaaaccc aagcttgatt agttttacct
      241 tttagtatag cctgcagagt gtaaaacaca gcacatcaga attgaatttg tcatctccag
      301 acctcacaag aattttagga actaaatggt taggaagcat cctggtactt ctctttgctt
      361 taatcatagt agaagtttca atttaaacat tcaggaaatc tcccttattt aaagcaatca
      421 actcgttgct aacagggtct ggctttactg tgtttaattt tttggcatca tgcaaaactt
      481 gattggttac agccatgtgt gaacaggtcc tctccctccc ccttctccct ggaaaatgtt
      541 aaatatcaga tctttgctgc atccttatcg gccctacaca tcctagtaac tgctctatta
      601 gtgcaaa
//
LOCUS       KCOD01002624             638 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 291964pyr ultra-conserved element
            locus uce-1896, sequence.
ACCESSION   KCOD01002624
VERSION     KCOD01002624.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 638)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 638)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..638
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="291964pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>638
                     /note="ultra-conserved element locus uce-1896"
BASE COUNT          225 a          115 c          135 g          163 t
ORIGIN      
        1 tttcagcaaa acttccttct caaaaaatgt ttgagtgtca gctgccacaa acaagttttg
       61 ccatgtaatt tcaaatagaa catttgggtg tttgcttttc aaaatgtgtg atttcctcct
      121 cactggtaca accagcaaca gcaattccac ttctgtctgc atcacggcac ctttcaaaaa
      181 gaagaggtac tacctctgcg attgaagaat tcccgagaat attttccaga tagagcaaag
      241 tgccttggga tattgcctag cagctctatg atgtgtgcta tgtggtctat gagggagaga
      301 aaaaaaggac acgggagtgg aaggggcagg gaaaggatgg gataaaaaag aagaggaaag
      361 aaactggaat tagtaaaaaa tcagaaatag tttcaaatca acaatgtttg cagcaaatcc
      421 atgcagaggt ttccaggatc agcagagctc tggcatcatt agtagcattt aggaacaatg
      481 aatgatgccc acattaccac tgcaaagagc atttacaagc aaacaagcat gaaaatggac
      541 aggtatacag atggaagcag gagttaactc tgattttaat tagtaactgt ctaattcaaa
      601 taaaaataca caatgtaaac attattccag tgtcactc
//
LOCUS       KCOD01002625             694 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 292075pyr ultra-conserved element
            locus uce-3989, sequence.
ACCESSION   KCOD01002625
VERSION     KCOD01002625.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 694)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 694)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..694
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="292075pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>694
                     /note="ultra-conserved element locus uce-3989"
BASE COUNT          239 a          138 c          103 g          214 t
ORIGIN      
        1 aaaaataaat acactgagtt ttctatttga gaaccaaact tcaaattgtg agtaaaacac
       61 aaaataatct ttttaccatg cagtgcccaa atacacgtat acgtgtgcac gcacatacaa
      121 atatccatac acaaacacga cagtctgtga gggcatctac cctgcagaca attcaatcaa
      181 tctctcaagt gacactcaca cgtgcctgca cacacaaaag cagatgtggc attaagattt
      241 acaaagttat tgaaactttt aacaagtaaa acgcatcttt acttagctac accagaatga
      301 ggaataaagg ggtttacata tgttccaatt ctaaacctat caatcaaacc catgttattc
      361 ctttgggagc ttatttacat gcatatttat cagcctcaca tgctaattcc ctgctgtttt
      421 atgcctgcga ggcatgttta tgagtcataa ttgttgatct catttgatgt atttcactga
      481 agtaagacat tattcagtta tgtggcctaa tgtcaatgaa ttatgatgac ctgatcttcg
      541 aaatgcaact tgctctttaa tttttattag agcattactt attcagaaga agaaatacaa
      601 aatggaagat tatttttata gccatttttt gaaacactcc tccctacctc taggcaaagt
      661 tctaaaagtg taattcgtaa acaccaaatg aaaa
//
LOCUS       KCOD01002626             729 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 292185pyr ultra-conserved element
            locus uce-903, sequence.
ACCESSION   KCOD01002626
VERSION     KCOD01002626.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 729)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 729)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..729
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="292185pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>729
                     /note="ultra-conserved element locus uce-903"
BASE COUNT          241 a          149 c          130 g          209 t
ORIGIN      
        1 ccaagatttt tattggtaag aattttcaga tgcaaacttg cctggttttg cctaatttgt
       61 ttctgttcaa ttaacaaaat acaagccaac tttgggaaag gaattagttt ctccaaacaa
      121 aaaactacag acattcaaca gcttcaagta aaatggggcc ttttgtctta aagaccagaa
      181 atgcaacaga aacaaaaaaa atgaaaatcc aggtacagga attatgtatt tcatactgaa
      241 taattatttc tgtactgccc gtaaatcctc tctggtaagc tgtgcatcta aaactcatcg
      301 aactgccaag gggtaaacgc agctccatcc atcacacagc cacttgacaa atacattcca
      361 taatagaagt ttatttttat gggaggctga atcaaggact ttcccatgca tacaaaaact
      421 tgtcaaaatt atttatgagt cttgctgaga cacacaatat gtcatatcaa actcctattt
      481 tccttccaag cacagactgt caatatctct gctactatca ataatgtgga acaccgctgc
      541 tataggccct caggattttg aggtcatttg cccatcctag gctgctgcca gacgctgtct
      601 ctagctgcaa tgcagctgag gagaggtgta tttacagcct ctatgaggtg tagttaaggt
      661 aagcactggg gactgcaatc aaaggctttg ccaacataaa ataaaatgga aacatatgtt
      721 tgaaatatt
//
LOCUS       KCOD01002627             351 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 292291pyr ultra-conserved element
            locus uce-3248, sequence.
ACCESSION   KCOD01002627
VERSION     KCOD01002627.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 351)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 351)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..351
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="292291pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>351
                     /note="ultra-conserved element locus uce-3248"
BASE COUNT           87 a           72 c           73 g          119 t
ORIGIN      
        1 ccttgtctcc ttgctgcagg ttttgctcag gagttagcca ctcaggaatt cctagtgcct
       61 gactgagcag taatttagca agctctcttg tgctcttttc ctgtcagcat taacatgtca
      121 attcatttta atagtctggg catgcgcaga ttttctcagt aggtatccca tgagcccacc
      181 ccgtggtgca gaaatgtgtt atagcttgtc tcaggccaca gagacttcag caagtttatt
      241 ttcattatgg ccaagcgtat ttgttaagac tttaaaatat taaaatgtgt ctgattggta
      301 atttatgacc tgtgcacaga aatggtaaag gacttctttg catgatatca t
//
LOCUS       KCOD01002628             533 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 292397pyr ultra-conserved element
            locus uce-5348, sequence.
ACCESSION   KCOD01002628
VERSION     KCOD01002628.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 533)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 533)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..533
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="292397pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>533
                     /note="ultra-conserved element locus uce-5348"
BASE COUNT          190 a           94 c           90 g          159 t
ORIGIN      
        1 tacctggcat catgtttcca ccaaaccaaa cacagataat ttactttaat tttggtgaca
       61 tacgtaatga aacagataga agcctaccaa gtactactct tccactgata agacaataac
      121 atcaatttaa ttatgtcatg tgactgcttc aaacaattta gatatcagac tgaagcttca
      181 aacatggttc tctcgataag caaaaatttt actgctgcaa ctttcagtgt gaaaagggct
      241 tgcaaacatt tttgttaatt atgtattaca gctgtccttc ataaagttaa ttactaatag
      301 ctgaaaggca atagagtcta tttgcatatg tacatgaaag gcatgacata tgcaaaaata
      361 tgattttaat tagcattcca tgatatgaag ggctacaaat caaactggca tgttttttta
      421 acattaaacg ctgaattcgt ctggacgtgt ttgcagtaat ggacaatgga aggactgtaa
      481 aacaccagca ctatggggtg taaaagccac aaaagcaaag acacagtact ttt
//
LOCUS       KCOD01002629             742 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 292508pyr ultra-conserved element
            locus uce-5119, sequence.
ACCESSION   KCOD01002629
VERSION     KCOD01002629.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 742)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 742)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..742
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="292508pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>742
                     /note="ultra-conserved element locus uce-5119"
BASE COUNT          200 a          149 c          127 g          266 t
ORIGIN      
        1 aaaagcctca tgttttttaa aaacaaacaa tagtactcaa atttacaact tcatttggtt
       61 ctccataaat taacatcttt gttagcactt tctgacatca tttcgtgtta acttaagaac
      121 tgatagctcg attttttttc agatattttg atggcatgac aaatcagaaa gaagaggatg
      181 tactgtatga ctagacacaa gatcagttct gtttgtggat tacattttca gtaagatgta
      241 tggatctatt ttttccttgt tcttaaatat agatcatgag acttgactga ggcaatatac
      301 atatcatcca tccatctatg gcgaactaca gccatgcagc tgacaacatt ttacaaaatc
      361 tctctccttt aacagctttt ctgaaactga cttcactggg tttcataata ggagtcagtg
      421 tggtgggtaa ccttctgatc tccattttgc tagtcaaaga taagaccttg catagagctc
      481 cttactactt cctgttggat ctttgctgct cagatatcct cagatctgca atttgtttcc
      541 catttgtttt cacctcggta aaaaatggct ctacttggac gtatgggact cttacttgca
      601 aagtgattgc ctttttgggg gttttgtcct gctttcacac tgctttcatg ttattctgca
      661 taagcgtcac aagatactta gctattgccc accaccgttt ttatacgaaa agactgacct
      721 tctggacttg tttggctgtt at
//
LOCUS       KCOD01002630             648 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 292619pyr ultra-conserved element
            locus uce-6875, sequence.
ACCESSION   KCOD01002630
VERSION     KCOD01002630.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 648)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="292619pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>648
                     /note="ultra-conserved element locus uce-6875"
BASE COUNT          201 a          137 c          123 g          187 t
ORIGIN      
        1 aaaaaataat tgtcccagga gaatatcata tctgtgtaaa tcaataatta ctgtatttca
       61 catgcccctt ttaattacat aatgtctgag attaaaattc aacagcttct ctcaaagaga
      121 aagtgcttta atatctgaag tgctgctcct gtaaattggc atctgaaaga taaaaacagg
      181 gcatatcctt cctaactgac tgcaatacca atgagctgca ccgacacaca gacctcccac
      241 attcttgata ggatgttttc tagcagagtg atccacaaat attatcattc aatgacaata
      301 cagttttatc aaggtacgtc tcaatccaca ggatacaagc cccacacaac agacggaaaa
      361 tttggcgcag cgctgcgcac actgcgtgtg ttacttactg gttattgcag tggtcatacc
      421 gagtcccgta tggcgctaca ttaacgaatg gcatgcaagc accttctgtt gaaacatctg
      481 cgacagggaa atttcaggca tttttccaga tatgtgctct cgaccaaatt ttcattaggg
      541 ctataaaacc tggcaggcag cattgttgtg tatgattttt taataaactg ggacatgcct
      601 ttgttagagg agtgaagaaa agggctcttt agagacttct tcctatta
//
LOCUS       KCOD01002631             463 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 292728pyr ultra-conserved element
            locus uce-4807, sequence.
ACCESSION   KCOD01002631
VERSION     KCOD01002631.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 463)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 463)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..463
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="292728pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>463
                     /note="ultra-conserved element locus uce-4807"
BASE COUNT          142 a          114 c           87 g          120 t
ORIGIN      
        1 cttgttctct tgtcagattt tattcctgaa cccagatgga cctgcttatt gtgattactc
       61 acacatcact gtaaggtgaa atatacagct tcaccccact gactaagaaa aataaatagg
      121 attctctccc caccacccac acccactccc acacttccct ctgaacttaa aataaaaaac
      181 ctgcagaaag attcccgatg gctttgtcag ggagggggga tggtgaggat tggtacagta
      241 tataacatct cagctctcct ggatcagtca cgcttcctaa ttcaataagg tgagaaggag
      301 cataatttga tcatatttgt tttgcatcac tgcaaaaaca gaaaatgagg ggctgcagag
      361 ccgcaccaat ttacttcatc cgaccttgat taaaagaaaa ttaattgccg catctctcag
      421 gatatctcag gcagcagcca atggctctcc agaatggcac aag
//
LOCUS       KCOD01002632             872 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 292837pyr ultra-conserved element
            locus uce-2020, sequence.
ACCESSION   KCOD01002632
VERSION     KCOD01002632.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 872)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 872)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..872
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="292837pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>872
                     /note="ultra-conserved element locus uce-2020"
BASE COUNT          203 a          182 c          203 g          284 t
ORIGIN      
        1 gtttactctt taggttttcc gttcttttca gcttgtgcat tgttcctgtg taggcccctc
       61 tggatgtgag ttgtgaagtc atacttgtcc gtgcaaagat gctggcatat gctgcactgg
      121 aaaggtccac tgtcaccatg gcaactcata tgcaatgcat acatcacttc atccagaaag
      181 acaatgccac agtgcacaca cttggtagaa agttcatctt gagtacttct atcaactttc
      241 tctgttttta ctacattcaa gggaccttca ttttttacat ttggtggtgc cttactcttt
      301 tccttggagg caccatttgc agttggccca ggtctggaat gctttatcgc caaatctaga
      361 ggaatgtcat tgtctgatcc gacagctgaa aaatgaggag gcagattaaa ggtgggataa
      421 ggcacatagt tttggcaagg atttggtagg ccaggcacat gactcaagta gtgtggattc
      481 ccaggaacag acagcttata tttactccag aatctcagcc agtcagcttc actctgaaag
      541 tcattgtgta caaatggaag tccaaaaagt gggtactggt atttttcaat agggcttcca
      601 ggtggagaat agtttgggtg tttcgcaggt ctcatgtatt tttctatcgg gctgcctctc
      661 tctgagcttc ctttcccttc tgatattgat gaactgtttc ctgggtctcc agtactttcc
      721 tgaggacttt ttatctgaat gtgcaaaggt tgcatccttt tgtgaatatc cagagtttgg
      781 ctgaccaata ttggctgctg agcagaatgg cttttagtca atgaacctgg ggcctcgtat
      841 ttactgaggc tgggaagctg aatttctctc tg
//
LOCUS       KCOD01002633             768 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 292945pyr ultra-conserved element
            locus uce-7732, sequence.
ACCESSION   KCOD01002633
VERSION     KCOD01002633.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 768)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 768)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..768
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="292945pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>768
                     /note="ultra-conserved element locus uce-7732"
BASE COUNT          186 a          173 c          156 g          253 t
ORIGIN      
        1 ctgagagagg gacaggcata tggcactttt actttccact ttttatttga tgatagtcct
       61 cttatcacag cctctcaccg attcccctgc ctcatgcccg cttcctcctt tgccatatct
      121 accattgttc cccttgtatc gtcttacttg ggatcaagtg attctctcca gcacaaaaat
      181 aagaagacgt attctttttc agcctcttct gatctcccag gctaattggc tcaggtgtaa
      241 accaagccag cagggctgtg actttgatgt gacactttag agcagcacac ctggtaacat
      301 ccctgtttgt gtgtcaaata ccagccggcc ttgcctgctg ctcaaaccca gctaataaaa
      361 acgctagtaa tcacgttgta ttacaaggct caaattcatg ctgttacttt attgcaaggt
      421 tgtcattaat tttgcagggt gaacctggaa tccgatccga cctgttttta ataagtgtgg
      481 gtctgtgtgg aactgtgtaa gtgaatgaca gaaaggtgac tgccagctgt ttcttcttta
      541 catatggtgt tacccttggc tttgatcaat aatgctgttt cactttaaaa agaaactcat
      601 tttgtaagga tgcagaagag gggccttcct acctcccttg tccccgtggt ttacttgtaa
      661 attatacaca attaggaaaa agccagtcaa cagtaagtgc tagagattgt ttccctcttt
      721 tgggcctgtt gttagttgtc ttattttgca atggtatttg gtagaatt
//
LOCUS       KCOD01002634             579 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 293058pyr ultra-conserved element
            locus uce-2662, sequence.
ACCESSION   KCOD01002634
VERSION     KCOD01002634.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 579)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 579)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..579
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="293058pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>579
                     /note="ultra-conserved element locus uce-2662"
BASE COUNT          164 a          102 c          121 g          192 t
ORIGIN      
        1 tctaaataat caaaattctt cttttttaat tatgcaaatt aaagttgctg aggaacaatt
       61 gcttgattag accagttggt actgacctaa taaattattt tgaatatttt tcacaggaaa
      121 ttgatttaat tgaagctttt gttagcccct gcgaatgcgc tcagttcatg ccacagcacc
      181 caggaattta taaatgggct cagaatgttg ttcaggcacc agaaaataaa cctccgagct
      241 atttactacc tccatgatat ataaagtttg cagttttgat tttgtgtgat tatgttcagc
      301 aatggtgacc tttagaggca acaatattga agtgtaatga ggagatgttt gatcactggt
      361 gtacaatgag gagttggcgt gacttctcca ttccttcctg gaatctgtga aatccagctg
      421 acaggcttta acctttagac tgctgagggc tgaaaacgtg tagggattta gcctgtttat
      481 acaccagggt ggctatatga aattttatat catttcttcc atcactccat gcggggatat
      541 tgtataataa cggccactgc tggccaatat tgtgctggg
//
LOCUS       KCOD01002635             430 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 293167pyr ultra-conserved element
            locus uce-5956, sequence.
ACCESSION   KCOD01002635
VERSION     KCOD01002635.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 430)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 430)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..430
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="293167pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>430
                     /note="ultra-conserved element locus uce-5956"
BASE COUNT          143 a           70 c           62 g          155 t
ORIGIN      
        1 agaaatttta ataatggtct cacaaaattt agaaagtaag aagaagatat tccatattgc
       61 tgtactaaac taaaaaaatt ttggcattaa ttaatctctt acattctgga ttttttgcta
      121 gtggaataaa cctaattaat tatgtctgtt tgatgtcact gaaactaaac agtaaattca
      181 ataatctctt tacattttca ccatttaacc tcctgcaggc tccctaatgt ctattcagat
      241 ctatattaaa ttaagtacca atgctaatga agggcaataa atgtggctgt cagtagattt
      301 ttctttcgtt aagcacatta tcctcttact gagctgtaaa tgagtaaaca ttagttttgt
      361 taaaccatgc gacaagatga aaatttttta attgcacccc ttaagccatt gagggttctc
      421 tattctggtt
//
LOCUS       KCOD01002636             267 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 293270pyr ultra-conserved element
            locus uce-995, sequence.
ACCESSION   KCOD01002636
VERSION     KCOD01002636.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 267)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 267)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..267
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="293270pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>267
                     /note="ultra-conserved element locus uce-995"
BASE COUNT           87 a           63 c           43 g           74 t
ORIGIN      
        1 tactgcttgc acaaaagcag agtttatgtt aatgcccaaa gaaaagtgta gtgatcagta
       61 tccatcatct ttccaactgc cttgtcacta catcaattaa tacaattgag caaaaaatgt
      121 cacaagccca gtggaaaaac ctttacacag cctttcaggg ggaagtttac tcccagcttt
      181 ttttcccttg cattagctcc tgtcatccac aaaacaacag aacccagtgg tgtcaattat
      241 atttgattga ctgagtaaag cacacac
//
LOCUS       KCOD01002637             754 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 293378pyr ultra-conserved element
            locus uce-2103, sequence.
ACCESSION   KCOD01002637
VERSION     KCOD01002637.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 754)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 754)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..754
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="293378pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>754
                     /note="ultra-conserved element locus uce-2103"
BASE COUNT          242 a          136 c          140 g          236 t
ORIGIN      
        1 catttatcgt tcagtttaga tggcagagca gctgagtcat aaaagcagcc cacaaaagat
       61 attttaaagc gtttgtaatg actaaattgc ttgaaataaa ttagccctga aaataaacat
      121 attttgtaca gcctatgtaa accaaatttc ttctccctgt aaattgcttg gactaagtgg
      181 gagtttgtgt ttgacaagag cgtacatttg cttcattact acatgcaggt taaaaagggt
      241 taataaacta taagatatca ttgctgacta aatgagtctt gcacccgaag aacaagttaa
      301 aaagaaatgc agagcctgtg ctgtaatgct aacaggcaat taacaaactc atgggtgtta
      361 attatcttca tactgtatca tgttcaatta gctcagcccc tgcaacaaag gcaaccatga
      421 gcaattgctt tgataggcgt acagtacttc atttgtagtt aatcggttta agccttgcag
      481 ttgctaggct acaccggtct ccagaggtaa aaagctgcac agatgcacta tgtttaaatg
      541 actacagaga actgtttaaa ctcaaaccat gtataactct ttattgattt ttcagagaag
      601 atctcagctc tgatgataag gttttgatat attttcctgc tacagccggt tccttggagt
      661 attgcagaaa aaatctgtca atatgcttct attatgatct cttgatctgt ggctataaaa
      721 acctttagct gcagccctta ttataaaata atgg
//
LOCUS       KCOD01002638             418 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 293483pyr ultra-conserved element
            locus uce-4337, sequence.
ACCESSION   KCOD01002638
VERSION     KCOD01002638.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 418)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 418)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..418
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="293483pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>418
                     /note="ultra-conserved element locus uce-4337"
BASE COUNT          138 a           97 c           73 g          110 t
ORIGIN      
        1 aggacctccc aactctcttg gcaccacagg gttaatctca cacatttaat atcctacctc
       61 aaacaagaat aattgtagca agaaccaagg tcttatggaa gctttagtaa aaccgtgcta
      121 cttcttcaga acacaacagt aaaaaagcca tgcaaatgga gatgaatgga gcacaagcca
      181 ccgaggtaat taaaaatgta ttttccatct tctagtaatt gaattgtgta caagctgcaa
      241 gttaatgagg tcatctaccc tcgagcactg acaggaaagc aggaataatt atctttcaat
      301 tttttcttat gtagcaatta attttaacca ttcgcctaca cctcccactt ccctcattcc
      361 agtcagtcaa agtcacggct aagccgaatt gacaagcaat tgatacggtg gcggcacg
//
LOCUS       KCOD01002639             835 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 293591pyr ultra-conserved element
            locus uce-1956, sequence.
ACCESSION   KCOD01002639
VERSION     KCOD01002639.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 835)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 835)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..835
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="293591pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>835
                     /note="ultra-conserved element locus uce-1956"
BASE COUNT          244 a          151 c          159 g          281 t
ORIGIN      
        1 ggctgatgaa aaatttccca gagagatctc aggtcaggtt tacataagct aaacaggaaa
       61 tgattgccac cattcacatt aaatcctaaa tgttttgtgt aacttcatct acattttatg
      121 ttcctgcacg tctctctgtc tctctcagct gatgaaattc cacacttcct tagattagag
      181 aaataagttc atgtttcaca gtttgttgtg cttgctaagc tatgttattt aatagacaat
      241 aaaaagttcc ttttgattgt ttaaatttta catactttgt aaatttttat gatacctagg
      301 ggtttgttac tgcttttccc tatggactac taatggaagt tagcctgtct agcccatgtg
      361 ctagatgctg ttaggataaa actgcctttg actttcacac ctctcagggg acgagtaatt
      421 gttgtgttca aacagcctgt aattgtgatc ccgctggctt tctcagtacg cttctggcta
      481 ttagaatcat taaacaactc agcacctgtt aacagcattg taaatattca accctgcttg
      541 tgtgcaggtt gagtccaata taggagaagg cttacagagc ccagcctcat aaattagagc
      601 ttctgacaag tcaattattg tgaaactggg cttcactgtg aaataaatga aatggtgtgc
      661 tgataaaaag gtaggctgtc tgtttatagc aaaggggaaa taatgactag atgattcaat
      721 gcagtgagca tgaaactgca ttgtttttat tctttatctg taattaaata gttaggcaat
      781 attgcttcat agaggaactc atttttatac ttggaacata ccagcggaat tcaac
//
LOCUS       KCOD01002640             744 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 293705pyr ultra-conserved element
            locus uce-5155, sequence.
ACCESSION   KCOD01002640
VERSION     KCOD01002640.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 744)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 744)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..744
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="293705pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>744
                     /note="ultra-conserved element locus uce-5155"
BASE COUNT          217 a          169 c          142 g          216 t
ORIGIN      
        1 aaaaaatcca aggagacgtt cgtacttgaa ggaaagcatt caaattgcca cctagtcctg
       61 ctatttggtt cctttgagta tggattcagg cttgatattc agatactggt tctgcagttg
      121 atctcatttg tttcttacaa acaaaagaac attctgcagt ccacccccac acattgttct
      181 actaaggtaa atgatcaaat ccaaatcccg ggttaatgaa tgccaatcat agcttcagcc
      241 cccgtttcag gcttggcaac aagttcccca agccttagca aacaattatc attcagctac
      301 tgtagaaatt gattcttggg ttgacgagag cagtcctccc tcggctggta aggtcctgcc
      361 atgggaagca attactgcaa gatgccagct gacagactca ttccgtggaa agtcaggttg
      421 tcttgatcct caggcactct ctaggcaaat tgtatcccta cactcatctc aaacctctta
      481 cgaactgttg gcttctatca ggaaaaatgg attgttccct ttgtttctgt ggcatttgat
      541 agaataaatc tggacatcct gcctgcacaa taaggagatt taattttaaa attctcacac
      601 caaaatgctt cagtatgata gactcataaa gcaatgaaga ttggcctagg gagcagtaat
      661 gcagcacagc tagtaggact gagcataaag agactcttag caatgacttg tctttactga
      721 tcataatttt cttatccccc taat
//
LOCUS       KCOD01002641             512 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 293818pyr ultra-conserved element
            locus uce-1535, sequence.
ACCESSION   KCOD01002641
VERSION     KCOD01002641.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 512)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 512)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="293818pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>512
                     /note="ultra-conserved element locus uce-1535"
BASE COUNT          146 a           90 c           89 g          187 t
ORIGIN      
        1 tctaatagtt gtcaaattaa tttctaccaa ttgtgtgtaa aatcgttgcc aaagtctact
       61 ttgggataga gagacataac ttagttatgg gcaccctgct gacttaggaa aataagcctt
      121 actacccagt caggcaggat gttaaatcat ttgtgattac taatgtctaa gtactttgtc
      181 attgccaagc tctcattttc catcagagca attctaattg atttaaatgg tctgtttcgc
      241 cttggtgcac gcatgatcac gtcgtaagtg gtctttagga ctattttaat tgccaaggat
      301 gtttttcctt aagaaaatct ctgtgcccag agcagaacaa attattattg caatctacaa
      361 atacacaaac attgtttttc tcccctctct gcatgttttg ttacaccaga ctctcttgtg
      421 ttttgggggg cttcagtctt aatttatgca aaattaattg atatatcttt tataattgat
      481 gtgctgtaaa attaatgagt aatttatgta at
//
LOCUS       KCOD01002642             661 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 293928pyr ultra-conserved element
            locus uce-3723, sequence.
ACCESSION   KCOD01002642
VERSION     KCOD01002642.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 661)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 661)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..661
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="293928pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>661
                     /note="ultra-conserved element locus uce-3723"
BASE COUNT          178 a          137 c          131 g          215 t
ORIGIN      
        1 ctgaacaaca ttagactttg cgtcactgat cctaagctgg tttaatgtga atttattggg
       61 acatgaggtt ttgaaacagg agtaaagctg aaagcatggc tgcaaagcaa agaaccccaa
      121 ctttgtttag atacttaact gctaaccaac ctgcatgtaa aaaggaaatt gtcagttttt
      181 gtggaaaaga cacctctaac ctttcccttt gctagcacgg caattctact ctgttttcca
      241 ctctctttgg cctaaccttt gcttgtgatg catttgagca tgtagaaatt aagggggttt
      301 tgctcttaac tttggtagtt caaaaatggg gcacagatga agttgctgct tggctggatc
      361 tgctcagttt gggagagtac aaagaaatct tcatcagcca tgacatccga ggctctgagc
      421 ttttacatct ggaaaggcga gatcttaagg tatttccttt gtgctacttt tctgctattg
      481 accattttct ttgaaacgac aacaacaaac ttttcttctt tccctgcact tgtcattgct
      541 tgtagcttgg cttacactgt gcaaatatgc aataaactaa tatgcgctgt ccttgggcct
      601 actttctgaa gtgctgactt gaactcacaa ccaagaatat ctgtgttatc caaaatttcc
      661 t
//
LOCUS       KCOD01002643             628 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 294131pyr ultra-conserved element
            locus uce-4829, sequence.
ACCESSION   KCOD01002643
VERSION     KCOD01002643.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 628)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 628)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..628
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="294131pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>628
                     /note="ultra-conserved element locus uce-4829"
BASE COUNT          196 a          125 c          118 g          189 t
ORIGIN      
        1 aaccaatgta atcagcttct gagaacaatg ctaaagacct tgttcctttt aggtgaatta
       61 attaaattaa ttcttttatt gttattcaac tttgcaccct gatttgctat tttcaaatcc
      121 attcccttct tttcttattt aaagcagttg gttaacttgg aactcttgta gcaggaactc
      181 aaaatttagt gatgtaagca agaaatagaa atgccagagc caccgaagag aagacatgcg
      241 gcattgctta cttaaagccc catcctgtcc ccccaaggac aatagctgct accaggatgg
      301 caccagcgat ggagcctatt ataagattgg tggcactagg acctgtgata aaggattagg
      361 gtaagacata aaaaccaatg actttattca cattatgtga agcatctgaa ggagacaatt
      421 cattagacag tctcaacaag cccaacttaa cttactttaa caacagagct gttggtctct
      481 gcattgtgct atgctgactt ctaccatacc tagtattaga cagtgaattc cattgtaact
      541 tactccgtta tctgctgatg aacagtcagc tgaggacact agatatttgt gagtaattcc
      601 ttaactgggg aaaagtatga atgctgta
//
LOCUS       KCOD01002644             566 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 294238pyr ultra-conserved element
            locus uce-3043, sequence.
ACCESSION   KCOD01002644
VERSION     KCOD01002644.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 566)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 566)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..566
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="294238pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>566
                     /note="ultra-conserved element locus uce-3043"
BASE COUNT          159 a          122 c          102 g          183 t
ORIGIN      
        1 tctagccact aaaattagta ttaagagaca cagaaagctc agtggagttt tcccagttta
       61 tcctgcggct aatcttttta tatccttctt taaaaccagg gggaggggct ggcatgtcta
      121 aactcctaac atatgtgctt cttatccaac atacagtagc ttaggacttt tcaaaaacac
      181 agaacccctg aatccaataa aattgcaaat ttcactgtat ttcacaatat cctaaataaa
      241 catgaacagc gtgcatttct ctttctggca tcaaatatta atctgtccat ggtcggaaat
      301 gtgctttcca tcttgtgtgc gctcacattg ggtaaacact tgggagattg ctattccaga
      361 cctttcattc tctcctagag tcaagagcat gacaaatttt tctcctaatt acacctgcca
      421 ctgtttgcct tctaatactg taaatcctcc atcacatagt ttttcagatt caggattagg
      481 ttccttctct gtcatacaaa tgattggagg tgcagtgtgc agttagcaat gcacattagg
      541 aatgtttagg gtgggtctgt gtgaac
//
LOCUS       KCOD01002645             472 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 294350pyr ultra-conserved element
            locus uce-1143, sequence.
ACCESSION   KCOD01002645
VERSION     KCOD01002645.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 472)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 472)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..472
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="294350pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>472
                     /note="ultra-conserved element locus uce-1143"
BASE COUNT          136 a           80 c          118 g          138 t
ORIGIN      
        1 tttgggttca aggttgagct ggagacgttt cctggcagaa tgtatatccc ctgatcacac
       61 ctttaggaga ttatcccgtc attaaatatt tgtaggataa caggggaagc ctaatttagt
      121 ttttgtttct ttttctctgt ggtttaatca cagatgaaag agactaatag cactacagag
      181 ctttctggtg atcaaaggcc aatcaatcct ctttgtggag taattaacta tttgctaaac
      241 ttgcagaatt gatttccatt tagggctaag agagagggtt ttaaatgaag accgatttac
      301 caggcgtgag gagggaatct cagcactgat gccaggagat actcagagtg atgaattgga
      361 gcctgctaat tggaggatga aaaatacagc tggaatctgg ccccgtttgc tcctactttg
      421 gtagaagaca ggaaaaggga aatcaggctg agaacctgac agatggcttt gt
//
LOCUS       KCOD01002646             499 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 294457pyr ultra-conserved element
            locus uce-3744, sequence.
ACCESSION   KCOD01002646
VERSION     KCOD01002646.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 499)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 499)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..499
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="294457pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>499
                     /note="ultra-conserved element locus uce-3744"
BASE COUNT          161 a           94 c           97 g          147 t
ORIGIN      
        1 tgacagtttt aaaaatcact taaaatccac ataaaagtac agtatgtggg attcaaataa
       61 acacaagtgg cctactaatg cactaacgtg tgtgtaatta ttttaaaatc tggttgcaca
      121 acaatgaact ctgcttttca tcttaatctc atggaggaga agagatttct gtggtcttgg
      181 taaaatgcaa tccacgccag gcttggacta gtctggccac ccaggtttgc cgtttcatat
      241 atctgataga tgtgttttga caagttatat taagtacaaa gcaggccacc agagcagcat
      301 gtggagttga tatagacaga gacagaaagg caaataacag tatgaacaca cttttgtagg
      361 cagtatttgc cataactgag tatcccccca tacatcatat taccacactt catgacagtg
      421 taagaaacag ggtttaaagg ctttcaaaag gcaatatttt atgcaggatt tacagtcttt
      481 gcatctccct tatctgtgt
//
LOCUS       KCOD01002647             543 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 294567pyr ultra-conserved element
            locus uce-6031, sequence.
ACCESSION   KCOD01002647
VERSION     KCOD01002647.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 543)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 543)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..543
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="294567pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>543
                     /note="ultra-conserved element locus uce-6031"
BASE COUNT          179 a          120 c           94 g          150 t
ORIGIN      
        1 ctttctaaat ttaaaggatt gagcaccact tactacgtga gactgaatat atgcattttt
       61 aaatggcact tagacatgag tggcttaaat aaaaaaggct tacacactgc caatataagt
      121 tacaaattca aacattcggg catgaaaatc ctttccctaa gttgttttca agcttcatcc
      181 ttttttctgt aataactaaa gcaaagccac agtagctgca gccatttgca tctaaggaag
      241 agatgttttg ctttggtgat atagttaatg agtctaaaaa tattcagtat aataattctg
      301 tcaaagcccc cacagtctcc tcaatgagca gaagcctgca ggattccaat ggggagccaa
      361 gtaatgagct ctcagcattc gctcccacac cgtccagacg aaatatactc gggcctccac
      421 ggttccacat cattagcaac atgaaacaaa gacacatgct tgactttaat aagcgactaa
      481 agttgctggc ttattaggct gtcactgcac ataaactcta tgacaaaaca gttccctgca
      541 aaa
//
LOCUS       KCOD01002648             661 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 294676pyr ultra-conserved element
            locus uce-5528, sequence.
ACCESSION   KCOD01002648
VERSION     KCOD01002648.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 661)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 661)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..661
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="294676pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>661
                     /note="ultra-conserved element locus uce-5528"
BASE COUNT          208 a          115 c          129 g          209 t
ORIGIN      
        1 gaattattta gcatacaaat aaaccagcaa agaagcctaa gtaggccaat atgaactaac
       61 tggattgaaa tattcatctg taaataactt ttcaatctgc tgctttcacg tacaaatact
      121 acatggaaca ttagacacaa ctagcttcta gggatattta ggctcactgg agagcaattt
      181 ttatgtctac tggcatctgt gggtagtgat atggactgac tgttaatata accaacataa
      241 aatttatgtg aacactcact gcaatagcaa cacactgtca gacagctggt ggttgatgcg
      301 tagcacatgc ggattttata cgcactgtgt aaactaacct ttgcaaaaaa gatttagcag
      361 gtttattagt ttaggaaatc gctataatta aggataattc ataatggccg cttatccatt
      421 ctatagcaat agctgcttta atttaggctc tgtttctttg agccataaat aagtgtgctg
      481 gtatcttctg cacagatgtg gcattcaacc tgttcaagtt ggttgagttc tgcttgtgtt
      541 ttaatgctag tagataagcc cataaaaggc actttgtttg aaataaattg cagcttgaaa
      601 gttctgaaac ttagtagctc ctttggagag ggcaaactca gaaattttcc gtcagagatc
      661 t
//
LOCUS       KCOD01002649             671 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 294785pyr ultra-conserved element
            locus uce-6471, sequence.
ACCESSION   KCOD01002649
VERSION     KCOD01002649.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 671)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 671)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..671
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="294785pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>671
                     /note="ultra-conserved element locus uce-6471"
BASE COUNT          214 a          110 c          111 g          236 t
ORIGIN      
        1 tagtgaaata taatattgtt gcccagggaa gattataaaa atggaagagc tcaattactt
       61 tgtctcagcc gtttttctta aggtgctaat ttgccaaagc atttctgaat tatttcgtat
      121 acagtattgt attctggtat tggataagct tttatgaaga gctttaaaaa tatcactagt
      181 aaatgtttac tcagtgtttt gtgtttgatc ttttttgtac aatccctata ccaaagctgg
      241 aatttatttt caatgactac atataaatgc agcacacgct ctgtgtccta acagatgcca
      301 tctgtaaaag catttacttt aaattagtgg aataagtaat caaaagggct ttgtacttaa
      361 tgcagaactt ttggtgacta ttaaatactc attagagggt gtttttgctg tatgactgtc
      421 aaaatcagca ggacgtttat gttagatttc ctgagtgggt caagattgaa tatgatttta
      481 caacttaaat aacataaatg aatgcaggtt atttcagaat ctccagatgt tccttaaact
      541 ccctgcccct aagcgaaact tacagccaat ttaaattttg cagcaatatt acagtgcaga
      601 tttttgcttc aaacacttaa caactctctt gttacattct gctcatttct accacaaatg
      661 aaaaagatga a
//
LOCUS       KCOD01002650             531 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 294892pyr ultra-conserved element
            locus uce-2077, sequence.
ACCESSION   KCOD01002650
VERSION     KCOD01002650.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 531)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 531)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..531
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="294892pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>531
                     /note="ultra-conserved element locus uce-2077"
BASE COUNT          170 a           88 c          110 g          163 t
ORIGIN      
        1 gaagacacag gctgtgactg tccagaagta ggctgcttgt agcatcttat cctgtgcctc
       61 aggcaacatt gtgcagacag actcagtcaa gagggatgtg tgaacttgtg tggatatatt
      121 tctgggtttt gttcctccct ttcaatataa tctttttagt gctgagctaa ttatgtagtc
      181 tcagttttac tgttgagtta gagtacctga tcaactttcc aactgtaaaa cagtttgaaa
      241 atcaaatgta gcttacatgc aagacccaac aaaattagaa gtgttaagta cgttttggca
      301 gttcactttt attatgccca gtcctcaaat gtaccagcag acaatcatct gaatgttagt
      361 tatttttcac atgcttatgt gatcacacaa aaagtacatg ctaaaaagaa gcagatggtg
      421 acagatgggg aaggttgaat aaggtggttt tggaaaccta gaaaaatgca cttctgtaat
      481 agtgtaaaaa taaaaattct ttgatcgcca agttagaatg aacaaaatag a
//
LOCUS       KCOD01002651             180 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 294998pyr ultra-conserved element
            locus uce-4544, sequence.
ACCESSION   KCOD01002651
VERSION     KCOD01002651.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 180)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 180)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..180
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="294998pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>180
                     /note="ultra-conserved element locus uce-4544"
BASE COUNT           65 a           27 c           25 g           63 t
ORIGIN      
        1 cagaaaatca cattattaat aatttcaaga caaaaataaa attgtttaag tatgcattaa
       61 acaatgacaa gcttacgttt tgattgtcca gcacttggac ttttgcatct gcatgggtct
      121 ataacacaaa aatatacctt aaatggtatg agaacttact tagagagtct ttttttttct
//
LOCUS       KCOD01002652             426 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 295102pyr ultra-conserved element
            locus uce-2681, sequence.
ACCESSION   KCOD01002652
VERSION     KCOD01002652.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 426)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 426)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..426
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="295102pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>426
                     /note="ultra-conserved element locus uce-2681"
BASE COUNT          129 a           74 c           63 g          160 t
ORIGIN      
        1 tctattaatt ataataatac catccaaaaa gctgtgaggg cttatttttg tgacatcact
       61 ctttgatttc ttactgcctt aaattatccc tttgttggct gggtgagggt aacagtcata
      121 cttttgtcat taaatataag gagttttaaa gcctgatcca ccctagctct aattgatatt
      181 gctttcattt ggcagatagt gacctgattt ataatttaaa tatgcatcat tatatgcacc
      241 tcttctgtat aatgaaaaag tgaagttact ctcatctttt cctgcaatgt taacatcaag
      301 gaaaagtatc tacttagagc ctaattgaaa actgttcatt gaatttcaac atgatagaaa
      361 agtcttttta tctctcaatt tgtccattag ctattataat tgaagtatct gctccacagc
      421 tgaatt
//
LOCUS       KCOD01002653             759 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 295211pyr ultra-conserved element
            locus uce-1471, sequence.
ACCESSION   KCOD01002653
VERSION     KCOD01002653.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 759)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 759)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..759
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="295211pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>759
                     /note="ultra-conserved element locus uce-1471"
BASE COUNT          176 a          213 c          146 g          224 t
ORIGIN      
        1 tacttttaat ttgctgtaac accacagcag agggatgcaa gaatgactgc tttccaaccc
       61 tcccttccac aacaagctgg gccacatctt tccctttcta cctctacctc cttccacccc
      121 ctcttcgacc cctcccattt taaactgtgt ccaagacaac acattatctc aactcccccc
      181 accctgaact aatcaaagga tgagctaagg gagggctctt tagaatagat gcctctgcaa
      241 ccctctcctc tcctgcaata atcaggtgaa ttaatgaccc tgaagttaaa gtgagcgctg
      301 atactcaggc gttgtgcagc gtaggggaga aagccttcat tgttttcgag caggaggcgg
      361 gcagcagcaa gggagattca tggatggaga ttgaatatgc aattttcttt caccttgcca
      421 agagctgccc ctgggctgtg cctggcctaa attttttttt cctcttgcca tctctgcctt
      481 atccggccct cccacctccc ttccattctt tccagaaaat taccttcaaa attgatttcc
      541 acttttacaa acaaatataa tgggaacatg aggggggaaa aaatcttggg ctgtgatgaa
      601 ttagggctgt caggtgcttc caagtctcct ttgtttttgt tttactgcct gttaggttct
      661 ttgtttttcc agcaactggg aataatgccc ctgcccgtcc ctatggtcca tggctacctt
      721 tatggccacc acctgatgtc attatccctg ctctccatc
//
LOCUS       KCOD01002654             921 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 295320pyr ultra-conserved element
            locus uce-6166, sequence.
ACCESSION   KCOD01002654
VERSION     KCOD01002654.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 921)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 921)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..921
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="295320pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>921
                     /note="ultra-conserved element locus uce-6166"
BASE COUNT          273 a          181 c          182 g          285 t
ORIGIN      
        1 atcatggatt gaaattggaa accttaaatt attgtttaat gatcaatgat caaacgcata
       61 atcaagataa agaaaattag gatggcagac agcaacatca caatttgaat tttacattat
      121 tagtcttctg cctaactagg cacttttctt gagtatctga actgttttgc cttttaactg
      181 tgcttgcagt tgctatagtg atggcataat ttcgtaatgg tctaaaaatg acactggcat
      241 agatactgac agataggaat taattcacta acaagtaatt atgtagcgaa atgttgactg
      301 ccatgcagaa ggtgcactgt gacacattta ctgtttttca gggatggcag taacattagc
      361 gttggtcatt agtggtagac atctccgtac agtgttggat acagacttat atgcagacct
      421 atttagttac ctgtgtgaca gccttgttca ggacaccaga aacagctgtc ctagcctgta
      481 tgagccaaaa taattaggcc tgtcatcttc tcgctctgat ttccccttca acctgctcca
      541 caaaatgcaa atattttgct ttcattgtca cattcacctt gacatggata ttgctttggc
      601 gcataactgg atgagatgac tcagaatttg cattgttcat tctaataaat ttgcttcccc
      661 tctaccgcat ggcaggaccc atcagataaa gtctcccaga gtgtcatcaa tcaacatcgc
      721 tgacagacgg cttttgcctt catttgttac ataggagaac atgcttaatt atttgtcctg
      781 taattagttg ggaaaatgtc aggaaatgtc aactctctgt tcactctgga agggctctgc
      841 ttgaaagcca caatgactga agtgtcatta atgctgccta acaagacgag gatcagctgg
      901 ggaaaagtga aagcttctaa a
//
LOCUS       KCOD01002655             801 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 295432pyr ultra-conserved element
            locus uce-3542, sequence.
ACCESSION   KCOD01002655
VERSION     KCOD01002655.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 801)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 801)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..801
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="295432pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>801
                     /note="ultra-conserved element locus uce-3542"
BASE COUNT          236 a          136 c          154 g          275 t
ORIGIN      
        1 aatgtaaaca gtatgtgtaa tttctctaat ttggaaagag atttctctaa ttggtaacag
       61 acactttctc ctaccgtatt tcgtaaaggg cacttgcaac gggattttct aatgttagaa
      121 gagatcttgt tttcttccaa aatcaggagg agtattcaga aatttacagt aaatggcaat
      181 tcatccttta gaaattcctt caacctacta ttagagttgc tgccagagat ctgaatgctt
      241 ttgcctaaat ctctgtaatc caataagctt tagcagcttg ttttgaaact tgtatagcac
      301 cccagcctgt gtctctgtat gttcgtttgc aggcaggtga gtgcccgagg gcctgattat
      361 tattcaagcc aggaggcctt cacagcccca accagaatgt aatttgtaat taactgtcat
      421 ttacttctgt ctgcactgac ttgttgttca aaagacaatg tatttgagct ggtcactagc
      481 ttctctttgt tgtggatatg atgtctttca gatctggttg tattcataat gtttagaaaa
      541 ccaagtactt gtactcttga aaccaaagca gaaaggggat ttcctaaata aattaggtat
      601 atgcaattat gaatacttag gtatgtaata tggagcattc tctgggatga gtttctgggc
      661 agaaagttaa gttaatatca aaagagcatt cctgatttga acttattata gttgagatct
      721 gtaaaatgaa agtgcatatt taagttgtgg gaattcttct taacacattt taaacatcac
      781 aactgtattt tctcactgaa g
//
LOCUS       KCOD01002656             400 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 295544pyr ultra-conserved element
            locus uce-7667, sequence.
ACCESSION   KCOD01002656
VERSION     KCOD01002656.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 400)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 400)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..400
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="295544pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>400
                     /note="ultra-conserved element locus uce-7667"
BASE COUNT          125 a           67 c           64 g          144 t
ORIGIN      
        1 cagtgttcaa ttattatttt taaaatgctg gattacagct atgaattctc tggaggttaa
       61 actggagctt tattataagg gaaactacaa gtaaacatta ttaattgtaa aaaaaaaatt
      121 gcttaaatta ggtttttttc acacctgctt ctttcttaat tagctcgtag tccacatatt
      181 tcagtcagtt gaactcttta gtatttattc aagcatactt gacattaaca tactgtttga
      241 tgtttgatat cctgagtttt taatttaacc acatgacaac aaatggtact tatgaaatat
      301 cagtgagctg gaaaaatatc ctgtgaagct gcttccggaa ttcgtgcctc atgctgatgt
      361 ttttatccta gcgagatttc caggcttcga accaccaaaa
//
LOCUS       KCOD01002657             340 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 295652pyr ultra-conserved element
            locus uce-7590, sequence.
ACCESSION   KCOD01002657
VERSION     KCOD01002657.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 340)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 340)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..340
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="295652pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>340
                     /note="ultra-conserved element locus uce-7590"
BASE COUNT          126 a           50 c           58 g          106 t
ORIGIN      
        1 gaagataagg tgtaaatgtg caagggaatt ttatccatgt ttctcccatg aatcataaat
       61 gaggaaaaaa attacagtct aaattgcact taaaaggaat aaagtctttt catgtcatac
      121 atgatttatc aaaatgatct cattttaaga gtactgtggt gtatcttgat taataacatt
      181 agtaagcatg atgaatggcc tctttaatgg taacacagaa tttattagca aaattctacc
      241 aaaaagggtg ggaagtaaaa cacacagcag ttagtaactc gcagaaacag cttaagtaat
      301 ctctctgtat tttgcattta gatatccttg aaaaccctta
//
LOCUS       KCOD01002658             616 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 295760pyr ultra-conserved element
            locus uce-4012, sequence.
ACCESSION   KCOD01002658
VERSION     KCOD01002658.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 616)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 616)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..616
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="295760pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>616
                     /note="ultra-conserved element locus uce-4012"
BASE COUNT          164 a          158 c          139 g          155 t
ORIGIN      
        1 tgatggaggg cttgcaaggc ttggtgggac catcttcaca aggccacagt cagagaaaga
       61 ggggggaacc ccaaaattcc cttgatccca agccgaggcc ctgcacctgc agaaatcctc
      121 aactatcaca tttctcctgc tccggatgat aacgaagata attgtttcat ccactttgtc
      181 aagctgaaat gaaaagaggg caaaacgatg ccatcataaa tcatcaggct gagacagcaa
      241 aaaaaggaca agatagtgac ttcattaagg gttatgtatt gtgtcattaa gttggcaggg
      301 gtcacctttc atgtcacgca gcagccccat gatgcattgc tggctcctct ttccaataaa
      361 attaaacgta gatgtaaaac tgattaggcc gtgtttgcct gagcccaagg cagggaactg
      421 cgccgggaat aattgatacg agatcgcggc tgatttgtaa tggcagcgat ttctcttcct
      481 ggtcatttct ctgctgacct tgcccattaa aataagccca gctgccttga aaagagagac
      541 gctcgttcca cccttcctcc ccctgcccaa gccacttgcc tggaattcat ttcctccctc
      601 gtccttggga tttctc
//
LOCUS       KCOD01002659             565 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 295873pyr ultra-conserved element
            locus uce-3937, sequence.
ACCESSION   KCOD01002659
VERSION     KCOD01002659.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 565)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 565)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..565
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="295873pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>565
                     /note="ultra-conserved element locus uce-3937"
BASE COUNT          214 a          114 c           96 g          141 t
ORIGIN      
        1 aggaaataac attagcacta atttctataa tgccagccaa gatatgcaca agcaagaaaa
       61 actgaaagca tttgctaaaa tgtaacaaat acttatgtac aaaaaattca ccttgaagca
      121 gagcacatgg cagttgacac tggaacagat ccactggctg ggattataaa ccacgtactg
      181 atccagagac atgtagtgga gattaacatt taccaaagtt tggcaacatt tttaattatg
      241 caaattatgt aaacaagagg aacatttcaa atcgatctac atgcaaaact tcatgtcatg
      301 cggatttctc tctcacagac agagcccatg atgtgcagca ctcagttgaa ggaacagcta
      361 tggcagacag gttcagacaa cctgcactcc gctgctcatt ataaaacaaa aaactactat
      421 acaggaaaga tgtactgtcc taaaaaatct agcaaatgtt tttcttccag ccaatagtac
      481 cactgcagaa aagggaaggg atgatataaa gttgtaaaac atggctcact acttttatat
      541 cacacaaata taaccttcca ttaca
//
LOCUS       KCOD01002660             729 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 295983pyr ultra-conserved element
            locus uce-791, sequence.
ACCESSION   KCOD01002660
VERSION     KCOD01002660.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 729)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 729)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..729
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="295983pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>729
                     /note="ultra-conserved element locus uce-791"
BASE COUNT          214 a          171 c          110 g          234 t
ORIGIN      
        1 tgcatggttg gaaaaaagct agaacatttc ttctttcacc ctctactctg aatccttgca
       61 ataattagcc aaagtaaaat gaatattagc ttatgcttaa ctgcctttcc agcatgttac
      121 tctgcattga cccagtagtg ctaaaccaat tattttttga actttatggc tttaaataat
      181 ccactgcttt aaaactccct ctacccctca gctacttaac cacaggcccg actgccctaa
      241 atccttttct tatactttgt agcttttaaa gcaagccccc tctttaagta gacataatcc
      301 cttctctgta gaaaacatga aagaccttga acaaatcaag atttctccat ggagaattca
      361 gctaatcctc tgcttagctc ctaacaagga aatccatctc gccaccaagc accccattac
      421 tagaactaat gcctgacttg aataacaagc acattattgt gctttaattg tagcactgct
      481 ctgtcacatg cagaagttgg agagaaacgt gactcggctt ctccaggaaa gacaggtcac
      541 gcctttttgt tgttgttcac cttactgtga tttaaaagcc gattaaatta actattaata
      601 tgaactgcac atgcttcaga ttagatgaaa cagctgtact gtagctctct agtacactcc
      661 attattaaac aagtgctgtt acactggatt actattcttc tttacgttgt cttttgactg
      721 ttgtgaaat
//
LOCUS       KCOD01002661             377 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 296093pyr ultra-conserved element
            locus uce-2399, sequence.
ACCESSION   KCOD01002661
VERSION     KCOD01002661.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 377)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 377)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..377
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="296093pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>377
                     /note="ultra-conserved element locus uce-2399"
BASE COUNT          100 a           95 c           97 g           85 t
ORIGIN      
        1 tccaccgcag gaggagctcc ctcgcgtgcc ctggtggggt gggctgtggg aggaccaggg
       61 ctcaggggct tccccggctt gcaggatctt tcatcctccc tcaccacaaa gccaggccag
      121 atctgcattt gcagcagccc acagaagctg cctctgttgt cttatttttg ttatttttga
      181 gaggatattt tagcgctgag cacattccct cctgttgcca tggcagccgt gacaggggtt
      241 atataccgtg agaaaaatac caaaattaat gagtgagtga aagagcagcc aagagaaaaa
      301 caaggttgag ttaaaacagt aataaaaaca atctcccaat aatttggcag cgagcatccc
      361 acaggcggcg aacatcc
//
LOCUS       KCOD01002662             578 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 296201pyr ultra-conserved element
            locus uce-2465, sequence.
ACCESSION   KCOD01002662
VERSION     KCOD01002662.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 578)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 578)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..578
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="296201pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>578
                     /note="ultra-conserved element locus uce-2465"
BASE COUNT          154 a          161 c          126 g          137 t
ORIGIN      
        1 caggacacag aaaatgccac ttgcccaaga gctggagaca tttgtgcctc ctgctctgtc
       61 cacatgtccc tgcagtcttc tctgctttca gaagccccca ctctcccaca accacctcaa
      121 tcttctgaaa ttcttcaaag ttccatcaat taaactcttg ctccgaattt cccttcacaa
      181 ctgcagcaca gtctgaacgt tctgttcgta cccagctcct acctattcga gtattggcaa
      241 atacatcagc tagtgaccca ctggtccctt tgccttctcc atgggaaagt gtagaggatg
      301 ctgatgagga tgtggatgac ccctgaacag atcggttgat ccaagactca gcattctgta
      361 agctctggtg caatgcagca gagagagcag cttggcgcct gagcgagccc tcgtcctcgg
      421 aggcggaaga cgtgtctgtg tggaagcaga aagaaaatct gggaaaagca catggcactg
      481 aacatgctct ttccaatcac atatcaacag cacaggcaaa ccagaggtta aagcagcagt
      541 tgtcagtggg aatctccaag cctagaactt aactctca
//
LOCUS       KCOD01002663             386 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 296310pyr ultra-conserved element
            locus uce-2964, sequence.
ACCESSION   KCOD01002663
VERSION     KCOD01002663.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 386)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 386)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..386
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="296310pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>386
                     /note="ultra-conserved element locus uce-2964"
BASE COUNT          104 a           61 c          106 g          115 t
ORIGIN      
        1 ggctgactcc ttgttagaaa tgaggtacaa gtatggaagg gcatggactg gagtgcaccg
       61 gggccaacaa gggcctgact tgatcaactt caacaggctt tggatcaggt ttagtgactg
      121 tttgcatgag gactggtgtg agtaggctga gaaatgtggt ctatcactgc agagaaagga
      181 tggtgcttta ctgggggtgg aaaatggaat tgtcaccgtg gaatgaatga attgtacagt
      241 ttctcttttg taacccaggg aataattaag atagatgggt agatgaatta gctgtcctgc
      301 aaggtcaaaa gtggattgcc ttattactct attatttcac tgttgtggaa ctatcaccac
      361 taacgccttt ttcatgatat tttgta
//
LOCUS       KCOD01002664             537 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 296415pyr ultra-conserved element
            locus uce-4320, sequence.
ACCESSION   KCOD01002664
VERSION     KCOD01002664.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 537)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="296415pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>537
                     /note="ultra-conserved element locus uce-4320"
BASE COUNT          140 a          104 c          142 g          151 t
ORIGIN      
        1 aaggcacatg tgtgttttga actggtatta cggaaaaaaa tagtttgttg tcccagtaga
       61 ttcccttatt gaacaatatt ggcattaaat aaaagagctg aatcataggg tgacttcttt
      121 atttcttctt actggctctg gttgtatgtg atcatgtgtc aacagagcat tcattgggtt
      181 agtcatttct ggaccagtgt agggtcactt gggattcaca gggctaggat tataccctct
      241 cttcacagca atgccaattg taggccttat acagatgaga gcactgagtg agaaataaag
      301 tgcatggtgg atgaaaggct taactgaatc gctttcagcc cattgttagt ccaggggagc
      361 ttagcgggga tgagagggca gcagcccgct ttgaaatttg cttgaacaag tgaataggag
      421 ctccccataa agcagcgcct gaaaggagct gcctgttttt tcctgccgta acaatggccc
      481 gcgcaggctg tgagagtttg gggaagcttg gctgattaaa ctgcccgcag ctccagg
//
LOCUS       KCOD01002665             491 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 296520pyr ultra-conserved element
            locus uce-4189, sequence.
ACCESSION   KCOD01002665
VERSION     KCOD01002665.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 491)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 491)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="296520pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>491
                     /note="ultra-conserved element locus uce-4189"
BASE COUNT          156 a          109 c           93 g          133 t
ORIGIN      
        1 tagctgtctg tgctgcctga aaagccctga ttgttgcctt gtagagaaag gaagaggcaa
       61 gtctggaaac caacaaggga ttactatttt tatattagcc tgtaattaaa taatagttca
      121 tgttgccttc ttccactggg aattacatcc ttttcacctc tcctctgcta aagcagagac
      181 atccattacg atgagtagct acaacacttg tcagatccaa tcagctccaa atgactgaaa
      241 agcaactgac gtgtgctctc ttagagcatg gtttcttctc ccccaaaagc ccactgtcct
      301 ttcacgtgca tgtaacagtc agaagagatc acatcacgca atgaagaaaa acagaagcat
      361 atggtactaa ggggcctctg caggagaggg ctaaaatgcc aaggctcaca cataaaatat
      421 atgcaaaaat atgtgttcat atataatgcc agatcatcac ttcagttacc ttggattatt
      481 taacaattgc a
//
LOCUS       KCOD01002666             301 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 296623pyr ultra-conserved element
            locus uce-2202, sequence.
ACCESSION   KCOD01002666
VERSION     KCOD01002666.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 301)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 301)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..301
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="296623pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>301
                     /note="ultra-conserved element locus uce-2202"
BASE COUNT          108 a           57 c           47 g           89 t
ORIGIN      
        1 tactgtttac caaaaagaaa cttgagcagt ccaggaaaag ctataaattt atgaaaacca
       61 taaattgagg caaacctaag attcccaatg gaatcaagat tatcttcccg ctaccaccac
      121 cttaaaatta tcacatgctt attggaacac taatatctgc accctaggag tacacttgct
      181 ttcaacaatg agggtgattc ttttaaaaac acttcagtgt ggtaaatgcg atacagatct
      241 ttgcaagttt tggaacagtt ttgctaatag cagctaacaa tactggatta atataattta
      301 t
//
LOCUS       KCOD01002667             563 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 296728pyr ultra-conserved element
            locus uce-4848, sequence.
ACCESSION   KCOD01002667
VERSION     KCOD01002667.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 563)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 563)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..563
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="296728pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>563
                     /note="ultra-conserved element locus uce-4848"
BASE COUNT          182 a          101 c          119 g          161 t
ORIGIN      
        1 tgccaggagg tctcagggct gaggaggctc tgagacgggg agcagcacaa aggagcaggc
       61 agggagagac aggcacaatc ggggtttcat ctacctccgt ggatttctcg cattacacac
      121 aatgcatact ttacatttta caaaaccaag gaaatgaagg gaaatatatc tgtcaccgaa
      181 gaagacatca gacctttaat agctgaaatg acgagtattt ttagatggag gtctagttta
      241 acttacttac attaagggtc taatctctcc tgaacaatag ctatgttagc ttgaacacat
      301 agtgagaaat ctgttccatt aattaagtgc tgcctgtact actcggattt gtagcaaatg
      361 ttaatagact tcctctgttg gacaattact ttattttgcc aagttgctaa tggattaaat
      421 tgaaaaggtc cgtgtgttag actttagctt caaagttcta agaaatgcct tgcatacaac
      481 aatggaaaat acctatatat taatagtatt aatgggccat cctcaaaggc acataagata
      541 tgtgaaagct tagcaaattc att
//
LOCUS       KCOD01002668             505 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 296946pyr ultra-conserved element
            locus uce-666, sequence.
ACCESSION   KCOD01002668
VERSION     KCOD01002668.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 505)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 505)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="296946pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>505
                     /note="ultra-conserved element locus uce-666"
BASE COUNT          176 a           89 c           83 g          157 t
ORIGIN      
        1 gcacctattt tacaaaataa aggcaaggca tagtttatta tgtaccattc atgtttataa
       61 aaatataaac ttaaaatcct atgaaatgtt atataagaat attaacctct gcttcaatgt
      121 acagtttcca gaatctgcca gaactgggga actgggcaac aaggcgttca taggtcttcc
      181 gtgctttgtc tatgggctga ttctaaaatc aaaacagcat tatgatttat gtaaatgaat
      241 tttactccag aaccaaatag tgtgagtgga tcatagataa ggaaatgtaa tcctatatca
      301 ctaaacctgt gcctctcgaa tgagaatgct ccaagcgtca aggtcatatg gattttcttc
      361 tagtttcttt tcagctttct tcactttttc tgggacatat tcagcagtct agaaaattaa
      421 aaagaagaca taagatttga aaagttctgt tacacagcca agctaaagaa acattccaac
      481 ctcagttttt aagacaacaa gtaaa
//
LOCUS       KCOD01002669             652 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 297056pyr ultra-conserved element
            locus uce-4560, sequence.
ACCESSION   KCOD01002669
VERSION     KCOD01002669.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 652)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 652)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..652
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="297056pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>652
                     /note="ultra-conserved element locus uce-4560"
BASE COUNT          193 a          118 c          120 g          221 t
ORIGIN      
        1 aattagatgg tttggctgca ctggtcatgt ttcagtcacc tttggaagaa tttctaggaa
       61 ggaaagacac aagaacacag ttgctctatg gtagctgctc ttttgtgttt cactcctgaa
      121 atgtcaagca aacattttcc ttctctttct gtcaaactaa ggaactttgt tggcaacact
      181 gtaggacagg agataactat agagctctct aattgttaag ctcttgcaag ggctgagcct
      241 gatcattcac tgaattgttg agttgatggg attcgtgtag ctggttataa attgataatc
      301 taaattaatt cattcaagca gaaatcgatt ttgtaactcc ttgagagctt gtaataatgc
      361 ttacctccta ccgttagctg cattctccgt ttcataaagc tggtcggaaa cagctggatt
      421 caggtgacct gctagctcat taaatctgtt acatgttcct tctggtaaat gatattaagc
      481 tgaaatgtcc ttgcgttgac ctttaatttt atgacagaaa taacctaatt tgtaacacaa
      541 aataacaatc tccttggatt actttgcctt gttaaaatat tttatgcatt tttcatttac
      601 acgaaggtaa tggaaaaaca cttaaactat ctgttattta aaccacaaga ga
//
LOCUS       KCOD01002670             590 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 297269pyr ultra-conserved element
            locus uce-1825, sequence.
ACCESSION   KCOD01002670
VERSION     KCOD01002670.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 590)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 590)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..590
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="297269pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>590
                     /note="ultra-conserved element locus uce-1825"
BASE COUNT          212 a           90 c          114 g          174 t
ORIGIN      
        1 tgcgtgaagt aagctgataa aaactattgc ttgccttcac tatttgtaaa aacattcggt
       61 gcctaaatgt gcagataaaa ggaaattgtt tttagaatgg tttggtacat ctgatggaga
      121 caacaaaata gaatgaaaat ttatgaatat catagatgga aaaaatgagg tcaagaaaat
      181 taaaagtctc tctgtcttcc aaacataatc taacttgctg ctcagtggct gtcacagtca
      241 tttcagggtt cacctatagt gtgcaatgcg tatgaactta attaagtact aagaggtaat
      301 gaattggaat tttttgctta gtactatttt tcttcatagc atgcaaaccc ataaatcgta
      361 caaagctgtc aaaaggaaat acctactcca ccagtgatgt ggaggaaaac agatgccact
      421 tattcaataa actaatatcc acacagaaga aaaatgttga ctagatacct cagagtcaaa
      481 gttggtttga aagtttgtca atacagaatt ttatggctgt gaactgagga tgaaatttag
      541 ctgaacaagt gaattaaaat ttcaggtact ctgactggtg gcacagtaaa
//
LOCUS       KCOD01002671             703 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 297380pyr ultra-conserved element
            locus uce-6543, sequence.
ACCESSION   KCOD01002671
VERSION     KCOD01002671.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 703)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 703)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..703
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="297380pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>703
                     /note="ultra-conserved element locus uce-6543"
BASE COUNT          218 a          115 c          126 g          244 t
ORIGIN      
        1 gaagttcgtt taagtgagca cttagggcta gaaaaattct gccttcattt gtgtatataa
       61 cttgagatac atctctgcat cctaataaga gcctgccaag tagacaaagg ccatgtggat
      121 gccaggaatg gtctttcagg ttccatattc tgaacacctc ttgtgagcac ctctgacact
      181 ctgcagagga gaggtgtgct gtgtccatcc agaagcttag atttccaatt atgctatact
      241 ttatgtgaga tttcagattt catcccttgt caagacttca aacctggtct tttagatatc
      301 aatcaaaagc acattttcta ccctgtcctc atttacattt atctaatgct taaggtcatt
      361 tgtgatcatt tgagtgtatt tcagcatatg gaatcagtga ataatagatt tcagcctcac
      421 gctgtgaaga aagattgtgt ttttacaaga catgatgttg tttactgggt gttaataatc
      481 actaattaat aaacatatct agacgtcata aaatgttgcg taaagatgtc aagtgtttaa
      541 cttcttgagt gcaatagcat ttgaggcctt atttgcataa ataaaattat taaattacaa
      601 aattatgtta agtactatat gaaaatatgt taaattctac attcttttgc agattcgttg
      661 taagtataaa gttttataga ataagtagtc aaatgactct gta
//
LOCUS       KCOD01002672             679 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 297490pyr ultra-conserved element
            locus uce-4249, sequence.
ACCESSION   KCOD01002672
VERSION     KCOD01002672.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 679)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 679)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..679
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="297490pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>679
                     /note="ultra-conserved element locus uce-4249"
BASE COUNT          194 a          151 c          158 g          176 t
ORIGIN      
        1 aaagaaagaa caagaattct caaaaaattt atgttgactt cactactcaa accaggattt
       61 taataggtat ctataaatgg attttaagta ggatttttcc atgttttctc ccaaagctga
      121 tttaaaatct aatattatta gattggtcac agccttcata ttttaactgt caaacccaaa
      181 gtctgaaagg tgattcattc aacgcttgct aaaatatttg ctcagcagca caatagtgtg
      241 tgatggaaaa taaactcctc tggagcatct caccctatca gccatggcct gcagcaggaa
      301 aagaatgagg gaaggtcagt caattatgtg tggtaatcac cgtaagcata ttatctgaga
      361 cacagatgtc ttccctgacc cctcacgaca tagctattaa ccccacagta gtataaaaac
      421 ggggaggagg aggagccggt cccctaggta aaccagacct tttcagcccg ggcttgtccg
      481 gcggctcagc gaagttaggg cgctgctgtg ggagctggtg ccgcgctccg cgggcggcgc
      541 ggccgcctct cctcttcggg gactttctgt agacctagtc atgtgagata aatagttgca
      601 tcatcaaaaa tgggactggc aaattgactt gggagatatt ttgggagcat tagcagccct
      661 ggaatgccag gcactgccc
//
LOCUS       KCOD01002673             474 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 297596pyr ultra-conserved element
            locus uce-3847, sequence.
ACCESSION   KCOD01002673
VERSION     KCOD01002673.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 474)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 474)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..474
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="297596pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>474
                     /note="ultra-conserved element locus uce-3847"
BASE COUNT          190 a           72 c           83 g          129 t
ORIGIN      
        1 tgccttaatc agaagcaaac aaaaaaagtc ccaattttaa agtgacattt atctattaga
       61 ttgaactgtt tgcaaaggaa atttatgtgc caaggttata aagattataa aagacactat
      121 ttaattatcc ctcagttgaa caaagaagtc cagaaagagc atgatatggg actaatcgac
      181 cagcaaaaat gcaaagtacc attcagcact aaagtaattg ggcagaacac agaaagagac
      241 caggataaat gattacttca ttaattttaa aattaaaggg caagataagg tggtcactat
      301 catagagagt tattaaggta aaactggcta atcagcacaa tttaaatgta aagaagtcat
      361 ccaatgccta ccaatttcag aagagcgtga aataaagcaa tttgatgtag ctttatcaat
      421 caaaccatac agataagggt ttagtctaag agttttctaa tttatcgtag cctt
//
LOCUS       KCOD01002674             509 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 297705pyr ultra-conserved element
            locus uce-3116, sequence.
ACCESSION   KCOD01002674
VERSION     KCOD01002674.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 509)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 509)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..509
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="297705pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>509
                     /note="ultra-conserved element locus uce-3116"
BASE COUNT          153 a          105 c           95 g          156 t
ORIGIN      
        1 ggtttttctt ctcccggctc tctttccgtt tgcctacaca tcctccaagt cctagcccta
       61 gctcttaact gcagtccctg gaacaagagg gaaaaaatcg tttatggctt aaatcccaat
      121 ggctgatttt gtgtgtgtgt tataagaatg cacccacaac aacaaaaaag tcacttctct
      181 gtcccccacc gtacagcaga agaataataa aaaagcttta tatttttgca gtgggtattc
      241 aaagataatt tgatgccatt gtttctgcta cagatggttc tttttaatac aataacactg
      301 ctctttgtgc atactacaca caataaaaat cgaaagcgtt ctcctgaata accattttgt
      361 tctcgcttgt atacaggcca acaaaagctg ccgtgaggta atgggttctg tttattgaag
      421 ccatagaata gaggtttgat aaagattttt gtatatgggg gaaaaaaatt aaaataaaga
      481 cctcgcaagg tcgagctgat ctctgcgta
//
LOCUS       KCOD01002675             859 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 297815pyr ultra-conserved element
            locus uce-3548, sequence.
ACCESSION   KCOD01002675
VERSION     KCOD01002675.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 859)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 859)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..859
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="297815pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>859
                     /note="ultra-conserved element locus uce-3548"
BASE COUNT          231 a          175 c          191 g          262 t
ORIGIN      
        1 aagtcaactt ctcacttccc agcatatgaa aagctctccc atgacaccta tagacctttc
       61 ataatggaca gattcttccc atgatacgga caaattgagt ttttcctggg aggtactgcc
      121 ccactctgag ctgataaagg aagacccagg aaccacaggt atgctgtgat tacttctttt
      181 gcactctgtg atgttccagg agcttgtgca tcttctgctt tatgagatat acttggccta
      241 ggggagctaa gtggaaggat gagggagaag aggaggtgca taatggtatg gcctccagca
      301 ctgttattta tgacagtatc cttccagcaa tctgttcctg catagggtga aggcatggtt
      361 tcaattctgc ccttgaaaca tggattaagc aatgttgcta atacatattt gtccctgcgg
      421 ctgtcaaaca tttcactgat actagactct gtagacagct taatagctag gtcttctgtc
      481 aatgttactg cagcagtgtc tcctttgctt taagatgctg ttcagattta ttcaagcaat
      541 aggtgtagca tggtgcttgg taaatagctg cacctgactg tgtacttgta tcatcactgc
      601 ttgctgacat cccaagtgac cagatgaaat ggatggacta gggaaaccaa gtgctgagaa
      661 gaatccagtg agtgaaagtt ggaaagatca tctgtctcgt ccctatttta tgtctcctaa
      721 cagagttaca tgcacaatgc attattattc tagaagtctc tgaacaataa ctaccatcca
      781 cagtagctgg aaatgtgtgt agccagcaaa atggttttgt tattgtcagc atgatgcttt
      841 cttgtgttga tgtaatcta
//
LOCUS       KCOD01002676             538 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 297920pyr ultra-conserved element
            locus uce-542, sequence.
ACCESSION   KCOD01002676
VERSION     KCOD01002676.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 538)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 538)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..538
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="297920pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>538
                     /note="ultra-conserved element locus uce-542"
BASE COUNT          160 a          101 c          118 g          159 t
ORIGIN      
        1 tcagtgtccc acgctgaaaa tggtacagta acagtaggaa gcaaaaagtc tttatagcag
       61 aaatattgcc ataagaaatt gtgttgggag taagcagcag ggtagacaaa ggtgaaaata
      121 agggaagaaa attaatctgc atacccagca ggcaatggtc atttatatat tcatctgttt
      181 tcagcgctga acttagtgag agtgtgtcca tttcatggtg ccgtgcagag aaaatgaagt
      241 gtgtaaggtc attcaataaa gattaaatta aaaacatatt cctatagcac cctcagggtc
      301 cattagcctt gatgagtgta caaatacttt ctttgttata tgtgctccat cctgaaaggg
      361 attgtgtgct tctctcatta taaatgtgca cctgaaaaga ttgaacatta tcccctcttt
      421 tttaactgac ctgtggccac cgctgggttc attagtgcag aacatctttt ccactggctg
      481 agtctgccct attgttttca ctggccaggg tcaagtcaag ggcattcagc ctagattg
//
LOCUS       KCOD01002677             210 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 298019pyr ultra-conserved element
            locus uce-7776, sequence.
ACCESSION   KCOD01002677
VERSION     KCOD01002677.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 210)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 210)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..210
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="298019pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>210
                     /note="ultra-conserved element locus uce-7776"
BASE COUNT           43 a           64 c           60 g           43 t
ORIGIN      
        1 aagctcgacc agggtgggca cggtgagaga tgccagcagc cccgcgaagc cccgcgttca
       61 tgcggaccgg ccgtaccttt ctggagagga cgacttctca gagttaactg acatcagcag
      121 ctcagtcttc tgcttgattt ctggaaaaat cagaaaacgt tcacttccgg aggttccctg
      181 cgcccttttg tccgccggag cccgggacgc
//
LOCUS       KCOD01002678             695 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 298127pyr ultra-conserved element
            locus uce-6664, sequence.
ACCESSION   KCOD01002678
VERSION     KCOD01002678.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 695)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 695)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..695
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="298127pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>695
                     /note="ultra-conserved element locus uce-6664"
BASE COUNT          194 a          127 c          153 g          221 t
ORIGIN      
        1 tttcctgtag ggccaactca agaaatatcc aggtttgggg aaagggcaag aagggaagcg
       61 ttaccttctt ccttatctcc ttggaataaa attgtttcat aaatctggca atgtccacga
      121 aattcattgt gcctcagaaa gaaatttaat ttagtgcttg cctttggaaa agtgtgttta
      181 acctgtaagt tgggctttgg gaggcagagg gtgcagagga attgctcagg aaagggtttg
      241 cagagcacaa atctgtttgg caaggaagtt gctgaaaact gtggagtaga tgctgcagag
      301 agtaccttta tgattgattt ccattcaagt cagactgact gcagtgtggt catttttcta
      361 acccataact gcacacactg cagcagtctg ctatctgcag ggtgtctgaa ttatagcagt
      421 ccatgtccct gttacctttt acacaaatta cttacaccgg tttctttttc catgcaaatt
      481 catcagtttt acagcctctt gtagctgctg tcaggaaact gttgcagaga taaaacgagt
      541 taattttact gggcttaacc ctctgttaaa gtgtgcagga agcatatgat agttaagaga
      601 agataacaaa ggatttgagt gttcttgtca taaattactt cccaacttaa ttccttttaa
      661 tgatcattcc agattttctc aagttttaat ggcgt
//
LOCUS       KCOD01002679             399 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 298236pyr ultra-conserved element
            locus uce-4155, sequence.
ACCESSION   KCOD01002679
VERSION     KCOD01002679.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 399)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 399)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..399
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="298236pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>399
                     /note="ultra-conserved element locus uce-4155"
BASE COUNT          147 a           71 c           91 g           90 t
ORIGIN      
        1 aaaactagcc tttctttttt tttctccttc caaggaaata tacagcttaa gcatggagac
       61 aaggggtgca tgatatgcag acaggtgtaa aacatgaagt aattatagaa gctcaaatta
      121 gttcctaggc ctgaggcaaa aaagagaaca gtgccttgac aaaagggaat agcaaataag
      181 gatagcaaac aaaaaatggc ttgaatgtgt aaattagcaa gaaaaatgag acagaaaagc
      241 agctttactc tactattatt caccacatga gaacagagca gctgaacatg atcaagaggg
      301 ctttggagga gagaggcagg catcaacacc gaaacgaagc caaagagtgg cagctccgca
      361 ctttctagtc agtcactcat tatgtggtga agtgctctt
//
LOCUS       KCOD01002680             720 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 298346pyr ultra-conserved element
            locus uce-2560, sequence.
ACCESSION   KCOD01002680
VERSION     KCOD01002680.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 720)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 720)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..720
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="298346pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>720
                     /note="ultra-conserved element locus uce-2560"
BASE COUNT          172 a          133 c          169 g          246 t
ORIGIN      
        1 ggaggtaggg atggcagcca gtagctaaca gctttctaga ctgtgtcttc cttcatgaag
       61 tttatcttct gtgcagggat ggctgtttgt ggtggctggt aagtcacata ctttatggta
      121 cttcggcgaa gctttcaagc tccttggcaa ctttttaggt agaggttttt acatgtctca
      181 ggcaactgag tgaatctggt catagtattc ttgttttatt aaagttgctt taaggtatgg
      241 tatcatagca ggcggtgtat ttgcgagggt gaaactggtc gggttttttt acactgtatc
      301 tctcctgcag ccagactgtt gatctcctca tgcaagagtc aggatgtcgt ttagaacatc
      361 cttcagctac caaattccgc aatcatgtca tggaaggaga atgggataag gtaacgtagg
      421 gcttatagga ctgtattaac cactgttgaa atatctatga gagaattcaa aattcaccct
      481 ccttatatac tttcttatgc cgatttctgc aggctgagaa cgacctgaat gaacttaagg
      541 ccttagtgca ttctccgcat gcaattgtgg taagaggcac acttgaactc tttcagagct
      601 gtgtagttgg actaattgta gtggtgtaat ctttcactat ggagttggtt gtccatagtt
      661 cttgttttct cttgtttact ttaagctgct tgcatgctat ctcaaatgtc atactaatct
//
LOCUS       KCOD01002681             533 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 298455pyr ultra-conserved element
            locus uce-2737, sequence.
ACCESSION   KCOD01002681
VERSION     KCOD01002681.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 533)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 533)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..533
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="298455pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>533
                     /note="ultra-conserved element locus uce-2737"
BASE COUNT          167 a          108 c          103 g          155 t
ORIGIN      
        1 tttcaggaag gaatggaagg ttaataaacc ccaatgtgaa atcaatcagg agagaacacc
       61 tttgctaagc acctggaaat atgggagggt acaaacaatg gtcttaacaa gctaattgca
      121 ttcccagcct gcctgaagcc agagctgttt tacatttcag ttcatttcgt cagagagaaa
      181 aggctgaagt gatttgtggt ggtctcagga gtctctgcca gctatgatgt atataaaagg
      241 aattttttat tccagttgta accataggca gtaatgttta tagtaggtga acatattagc
      301 ctggacgcag ggcatgaatt ttactttagc aaaagccagt tcatttatac agcctaagag
      361 ttaaatgtcg gtatttgaag acaaattata gggaaattca tttaaaccca tgttatgtgg
      421 cagaatataa aaacagacag tcctatctat ctttatcaat tttttacagc cctcttaatt
      481 cactttgctt ccagcaaccc cttccccaca aacctctcct cccgctagca cac
//
LOCUS       KCOD01002682             687 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 298563pyr ultra-conserved element
            locus uce-4136, sequence.
ACCESSION   KCOD01002682
VERSION     KCOD01002682.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 687)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 687)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..687
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="298563pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>687
                     /note="ultra-conserved element locus uce-4136"
BASE COUNT          199 a          134 c          159 g          195 t
ORIGIN      
        1 acagaaataa tgtcaagcag ggccccttat ctcaggatgt tgtaatgtag ctgctgtaag
       61 ccctcgcctg gagacgagat aagagcaacc ttacaagctt gtgggggagc gaggaccagc
      121 agtgccgtcg ctgggacaac aatggcagag ctgtcactca cacattatga ctctttctgg
      181 tgccaaggaa agatatgtat gctgagtggt gaataacaag cacaaaaata aaagtcccga
      241 atgttcatct aataatgatg tatttgtaac aggattatac tgcccaatga tattctttct
      301 ttatctcctc actaaatggt ggggcagctg tgtgctttgg caaggcatga tgtcctttct
      361 tttgtgtgct gcatattaat cctttattga agtaattaaa tgtgtgctta atggcaatga
      421 gctggcagaa tgaacgtaca attgaattag cagttatgat ggggaccatg ctacaagatg
      481 aactaaatgc aattactgta ggcatttttc tccaagtcga atctggctac atgacatgac
      541 ttaattacag gttgttagac acatctgatc ccatagcaga ggcacagctc atgtacctgt
      601 gacacacata tattcactaa gaaattcagc ctggtcttca ggcagctctt ggttgggcta
      661 aaaacagggc aatctagtgt ggtcttt
//
LOCUS       KCOD01002683             791 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 298674pyr ultra-conserved element
            locus uce-6929, sequence.
ACCESSION   KCOD01002683
VERSION     KCOD01002683.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 791)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 791)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..791
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="298674pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>791
                     /note="ultra-conserved element locus uce-6929"
BASE COUNT          229 a          132 c          128 g          302 t
ORIGIN      
        1 ttttatcttt tgagataaat gtcctgctgg taatcaaaca ctgtaaataa gacttgagat
       61 ttttagagat cgttatgcta attatcctct aaatctgagt tgtatgccaa actgtttaag
      121 ccatttaaga tcatactttt ttttgcatgt tgcaaattag acagttcatg gttatttctt
      181 agatatgttg atcataaagg atatctaaca gattttccag tacttaactg taccacttgc
      241 ttctttctct tttcttcttg tctatgatgt atgattaatc atagattact tcattttgtt
      301 tcatttcatt tacaacattt atgagcttca ctttgtcggt atgaaatgct tgtccccttc
      361 tttcctttcc aaagtggcat aattagtgtt agcatctttt ctaacaggct acataaagtt
      421 tagtggctgg attaaatcaa gtcattaaca taatgtgcta tacaatttgc ccctatctct
      481 tttcgtttcc agtacatcaa agtgccacag agtgccagtg taattgggcc ttgctagctt
      541 gtcaggttca gtcaggctga tggctgctgc ttttactaaa aagcttccag gcatgataat
      601 taatagagaa aagaagtctg agaaatgtaa aagtttggac agttctctat gaatatttca
      661 tacatttgaa taatcagaag ttaacattat caatttgatg tataatacat tgattaaaag
      721 ccttgtttca gatcctcaaa atagacatca aaactgggaa tttgcatttt ctttggcatg
      781 gtctttatat t
//
LOCUS       KCOD01002684             625 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 298786pyr ultra-conserved element
            locus uce-6219, sequence.
ACCESSION   KCOD01002684
VERSION     KCOD01002684.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 625)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="298786pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>625
                     /note="ultra-conserved element locus uce-6219"
BASE COUNT          220 a          137 c          151 g          117 t
ORIGIN      
        1 agccaccccc ttctgaaggt gttaagcccc cttcatctgg acaaaaatct atgctggaaa
       61 aattcaagct ggttaatgct aggactgctc tgagacctcc tttgtcactg agctcaggac
      121 ccagtgacag tgggagagag gatgacaact tttcagagtg tggtgaaatg gatgtcttaa
      181 gtggtggggt gaacggtggc ggctccacaa gtagcagtcc caaagtgtca ccgaagttaa
      241 cccctccgaa agctggcagc aaaaatctca gcaataaaaa gtctttgcta cagccaaagg
      301 acaaagagga aaagaacagg gacaaaaaca aagtttgcac tgagaaagca gtcaaggaag
      361 agaaggatca ggtcactgaa tcatctacaa agaagagctc aaaaattgca agcttaatcc
      421 caaagggaag caagacaaca gcagccaaga aagaaaattt agtatcatct tctagtggga
      481 tcccaaaacc tggatcgaag gtgccgacag caaagcagag cacttcttcc gcatgcacag
      541 ggagtaagga ggttgaaaaa ctgaggacta caaaaggaaa ccagtcccaa tcaacaccaa
      601 aatctcatct tagcgagaag gcttc
//
LOCUS       KCOD01002685             665 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 298895pyr ultra-conserved element
            locus uce-1693, sequence.
ACCESSION   KCOD01002685
VERSION     KCOD01002685.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 665)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 665)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="298895pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>665
                     /note="ultra-conserved element locus uce-1693"
BASE COUNT          212 a          124 c          124 g          205 t
ORIGIN      
        1 aaaggagttc aacactaata aaaacttgga caaattaaat tgacaaagcc ccattacctt
       61 ggcaaaaagt ccctgtcaaa agataaactt taaagctaga atgcatgaaa gagtccccag
      121 atagaattaa aatttaaact gattcttgag agataagctt tttttaaatc cacctctttg
      181 ctgcaagtca ggattttttt cccctttaaa tctcttgagc gattttcatt ttttgcaagg
      241 ccgcactgct ggtgtcctgg aaaaatggag agttagagct ttatcagttg gtgccctgag
      301 gtatgtggca aagaagctaa atccttgaag attagcaaaa aaaatgcagc acatggcaat
      361 aaggggctta tatgactact agtattagtt caggtgaaag aagtattgct tatacataaa
      421 actggacaaa tccactgaca atgtattttt agttagctac aaaggagtct tatattgctg
      481 gactttacct ctttggtgat ttgggaagct tagtaatcca ctgtaaatgc tcttctgctg
      541 gccccaattc ccagtattac tcccgaatgc tgctttttaa cccctaaaag tacatgtttc
      601 cttaatttag cttttagatc acacaatgac ttatttagcc agcagttgtg ctgcaagagc
      661 aaatg
//
LOCUS       KCOD01002686             505 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 298995pyr ultra-conserved element
            locus uce-5366, sequence.
ACCESSION   KCOD01002686
VERSION     KCOD01002686.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 505)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 505)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="298995pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>505
                     /note="ultra-conserved element locus uce-5366"
BASE COUNT          136 a          109 c          120 g          140 t
ORIGIN      
        1 ttttcctggt caataaatgt gatttcttct tttaaaagca gaagctaaaa gctctttgat
       61 gggagaggcg ccgcgttatt gtgtccacgg caaatccggc acaaagcggg agctcagcgg
      121 ggctccggga gggtgagatc cacacttaac ccctgcacac attgttgctc cgtttctttt
      181 cctggatctg tcaggaatgt aacaggccat tttcaatcta aatcttgtta tggattaata
      241 agcttattat gcaatttatc atgaggaaaa ttgcggccaa ggctccacgc tgatcccttc
      301 atttattccc tgctctgggc cagactaatc ttcctgacag ctaagggtgg aatcacacga
      361 gcttgctgaa gatgtggtca cttggaacct ggaagtcagg atttacataa aacagggagg
      421 ctttgggaag ggataatgtg gtggtgtctc ctgccacact aataactgga actaagacaa
      481 aaaacaatgg taatccaatt tgtcc
//
LOCUS       KCOD01002687             418 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 299096pyr ultra-conserved element
            locus uce-7317, sequence.
ACCESSION   KCOD01002687
VERSION     KCOD01002687.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 418)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 418)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..418
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="299096pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>418
                     /note="ultra-conserved element locus uce-7317"
BASE COUNT          117 a           70 c           68 g          163 t
ORIGIN      
        1 ttttgtttcc tgttgaaaac acagtcccta ctcaattcac agataatctt gtgtacacta
       61 tacaatttgt tatgcagtcc tcagctgaat ccctggatat gaattccgtt ctcattgtca
      121 gagtgttata gtagtattat atagaacttc aatgtctttg tggacattgt tgtgaaattg
      181 gtgacttaat gtctagctat catatgtctt tttgcaagac agttaggaac agtatgtaca
      241 gtatataatt gctaaatgat ttaactatga cacttgcatt tgctgatgct taatgagacc
      301 ctattatctg ctctttgctc ctattacttt atagcctttt taatctatca agtatttaca
      361 gtgttctatt tttcacattg aattgatttt agggcataaa agatagcatt gcaatgca
//
LOCUS       KCOD01002688             699 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 299204pyr ultra-conserved element
            locus uce-6636, sequence.
ACCESSION   KCOD01002688
VERSION     KCOD01002688.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 699)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 699)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="299204pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>699
                     /note="ultra-conserved element locus uce-6636"
BASE COUNT          212 a          151 c           95 g          241 t
ORIGIN      
        1 atacagagta tcctcaatgg atgtataact gccctctcaa atggagtttc ctgatatttt
       61 aaatgaatgg tggggtttat tttggcagca gcatcacata actaatgctt catattacac
      121 acaaaaatta ttttggtgcc attccttaaa tgaaatgttt catttcaata aaagcttgta
      181 attgtaacac ttaaatgcta tcattaatag caaaaagaaa gttctcccag caacattaaa
      241 gagtgaactt ccctgctctt tcctctatta cagccaatgt ctttttattg tctgttttca
      301 tctccatttt actttatctg ccaaactact ttgcatttca agacatttcc actcaccttg
      361 agttcttggt tcaaaaagaa acaataaagt ttaatctttt cacttgacaa tgatgtatgg
      421 gtctgctgaa aaacactttt caggtattat cattaaaaag tctctccagt ttctcttcaa
      481 ctcttgatac acagagaaat acgtcacaca cgcgaggcct tttatcaaag ctcctaataa
      541 taccacttaa ttaggaacca aagctcacta atgttccttc tgagagctcc tcagaacagt
      601 ctttctctgg ctttagtcat ttctcttcag ctaaacatcg tctaatgact ttattagtga
      661 tttcaaaggc tagcaaaggc taccactcca ctcttttct
//
LOCUS       KCOD01002689             662 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 299313pyr ultra-conserved element
            locus uce-4089, sequence.
ACCESSION   KCOD01002689
VERSION     KCOD01002689.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 662)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 662)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..662
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="299313pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>662
                     /note="ultra-conserved element locus uce-4089"
BASE COUNT          185 a          149 c          127 g          201 t
ORIGIN      
        1 tcctgggaag acaactagaa tatgtctttt gagattgcct tgcaccttct tcctctagaa
       61 aggcaggctg ttaaaagctt cagactttta tggttctaca gataatcttt ccatttagaa
      121 aggcatgcat tttcatagca cgcttatcag gaactacagc ctcaaaggct gcagattggg
      181 ctctactccc aaaagcgagg ggagaatgta acactctctt tattactagg atcagtcaag
      241 atctggctct catcgcacgg gaaatcaacg atgtagcagg agagatagat tcagtgactt
      301 catcaggcac tgcccccagt accacagtaa gcactgctgc caccacccct ggctctgcca
      361 tagacactag agaagaggta ggagatcttc atggagaaat gcataaggtt cttccttttc
      421 tttatttctt ttgctttttt tgcatagact tccactcaac ccgtatgcat gatctctttt
      481 acatttcaac aaacaaccca gaagttactc tgtgaacaca gcttgtcaaa aggcatactg
      541 tctgtctctt tttttccacg aaacatagga caagatagtt atttgtttcc tgcttgtctg
      601 tagccttaga tactaagtgc atttaaagat actagtgtgt atgcaatgta attctttgca
      661 aa
//
LOCUS       KCOD01002690             760 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 299425pyr ultra-conserved element
            locus uce-6571, sequence.
ACCESSION   KCOD01002690
VERSION     KCOD01002690.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 760)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 760)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..760
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="299425pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>760
                     /note="ultra-conserved element locus uce-6571"
BASE COUNT          205 a          207 c          158 g          190 t
ORIGIN      
        1 aaaagcaagc gcctcattac tccccatctc aaccagcttt gacagaggca ctggaactcg
       61 taagccgcgt tccactgggc tgggatgggc tgttttccag ccatcctgca cgttcaatgt
      121 cagccattag ttcttcccaa tcgggcatca atgttcaaca cacacccgaa aaaatatata
      181 atactggtaa taataataac aatctgcagc ctctccgagc ttcaatactt gaagtatgag
      241 tcaaagcagc agtttcactt ttcactcggg aagctgacaa gcatgactag agggggaata
      301 aaataacatt cagttcgcat aaatatcaag cgggctgctt gagactgatg ggccaggaat
      361 gtattcttag ccatcattct ggcagacagg cccaaggaca ctcataactt attttacaat
      421 catttagttt cagctcaagt ggaaaacgtg acaacttatc tctgctgaca agatgccata
      481 tcgaacctta caattaactc tcccccgatt atctgcccag cccatcatta gctctgcagc
      541 tcttgatgga ctgaacgggc acagcttccc ttgatgatgg tcatggttcc attacacggc
      601 actaaggaca aaactctccc cttgccacgt agctgggggg cacatcctcg tttttgcaac
      661 cgttaagtga tgtgcagcaa aacgctgctc ggagcatcct cgtgtttcag cccacgcctg
      721 ctgctgtaca gcagtgagcc agatgcccat ggcctctccc
//
LOCUS       KCOD01002691             723 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 299534pyr ultra-conserved element
            locus uce-3353, sequence.
ACCESSION   KCOD01002691
VERSION     KCOD01002691.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 723)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 723)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..723
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="299534pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>723
                     /note="ultra-conserved element locus uce-3353"
BASE COUNT          233 a          150 c          118 g          222 t
ORIGIN      
        1 ttttcgcttt gttgctaaca aatgctcaag ctccagacaa agcagtcagc aaatgcattt
       61 attattaaaa caaacttctt taaaaattca aatcttgact tattaaaaaa aataataaag
      121 acttttatgt agtttagtat gcaagagtta gattgcttga cctctctttt aatgacttaa
      181 ttagctgtac taaagcccag ctgggcctct gctgacaaca tagctagata tttcaatcag
      241 gcagtgttat ggagaataag taataaatgc taccttgtcg ccatacagtc ccaaaccaga
      301 gtgcatgctg gtaatgctaa atttgatcag tatgcctcat atttcaatta gtcgtggtct
      361 gaatcactaa aactgtgtaa tgtgtatgaa ttcctgatat cagatacaga gctacaggct
      421 cccacagtta gaacccattg agtttgcttt tattagcagc caattaatgg ccaaaatctg
      481 cattgctttt aaaatttata acctctattc cagctgcatc catggctcct agtgtactgt
      541 atacaatcag atccatatca ctgtcgcaag tcaaacagct gcaaactgta ttctgtctgc
      601 agaactgcct tctatacaga agctttttta acctcttaga agtccttttc aaagcccagc
      661 agcaccagtc actttgcgac aatgagcgat ttaatacaga aagaaagaaa tctacaccaa
      721 ggt
//
LOCUS       KCOD01002692             701 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 299646pyr ultra-conserved element
            locus uce-6351, sequence.
ACCESSION   KCOD01002692
VERSION     KCOD01002692.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 701)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 701)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..701
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="299646pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>701
                     /note="ultra-conserved element locus uce-6351"
BASE COUNT          216 a          121 c          150 g          214 t
ORIGIN      
        1 gcagcagtta gaaaagtgca cccttgtgac caagctgggt tttactgatg gtcactgtca
       61 cctcatgcat tcaccaccaa aaaagaaact aaataaatag ttttaaccaa gccctgggat
      121 aaaggctatt ttcaatttta cctttcacgt tttaattgta tagcaataat tttgcaatag
      181 agttgccaat ggcaaacatg caaaagacat taactttatt tatgttttgg attattaatg
      241 tggctgttaa aattcctcca gttagttttg attgaattgt ttttttgtgc gattctgtcg
      301 tttaatggag cggtaaataa gaatttctga taatgagccc aagcatctgt cacaacaacc
      361 tggcgctggt tattaacatt tccattaacg gcagggtggg cagtgataat atggaaacca
      421 cacagttaga acaaaataaa tagttggtgt caggctgagt gggtgttaat tactttttta
      481 ttttataact ctagggagta ttggtagaaa agtgtgactt atgaaggtca ttctctctta
      541 agaaagaagt ctccagagga gcagctaacc ggggctaccc agtgcaagtg gtgaatattt
      601 tatcgcttct atttatggcc cagaaagggg cagagagaaa agagacaact ttctcacacc
      661 gtgaacacag agaaaggaga agtgtacctt tgccctgcct t
//
LOCUS       KCOD01002693             529 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 299758pyr ultra-conserved element
            locus uce-7721, sequence.
ACCESSION   KCOD01002693
VERSION     KCOD01002693.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 529)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 529)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="299758pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>529
                     /note="ultra-conserved element locus uce-7721"
BASE COUNT          149 a          132 c          123 g          125 t
ORIGIN      
        1 ccacaactgg tttcttcagc tgccccctaa gaaggccgaa aaaaacaaaa gcccaagctc
       61 tcaccttggc tttgaaatct tttcctgacc agctttattg tccgtttttg tgataaaaaa
      121 ataataaaaa gcattcctgg ctgtttaacg gagagaagcc ctaattgatt cccacagtca
      181 ttaacctgca ttttacctcg gagagtggta gttaaggaag tcggcactgc tatttataac
      241 tcatctcaaa ttgagggcag actgcctaaa atctaacaca tcccagctgt actcctgttt
      301 gaactggggc caagggaatt ttttaaagca atcttggcac tgaatgaatg acaccaacag
      361 tatgagcgcg tgtggttgtg ttgtggtgac gtagcgctgg aggtggaagg agctcagccc
      421 cgagccggag ccgcccaccc agaaccaaac acaggaaacg tcttttcctg tggaagcaca
      481 tggcaaaagc aaagccatcc ctggccacga gagcttggac ccgcgccgg
//
LOCUS       KCOD01002694             835 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 299868pyr ultra-conserved element
            locus uce-1363, sequence.
ACCESSION   KCOD01002694
VERSION     KCOD01002694.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 835)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 835)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..835
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="299868pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>835
                     /note="ultra-conserved element locus uce-1363"
BASE COUNT          291 a          143 c          170 g          231 t
ORIGIN      
        1 tgatgcctga aacatcttct cagctaaggg ttatttgcac acagctccag ctctgtgaaa
       61 acaagcagct tagaagcagc agatctctaa aacttgcacc acttagagag gaaagacctg
      121 ggtgaaaaca aatggtttat gttttcagcc agaaataaat aaggcatgga ctatggctct
      181 ctcatctacc agtgagtttt attaaagagt tagagcaagc tccagtttac aagatattca
      241 gaaccatatg tatgcattaa ttaaaggaat gtggaggagg aggaggggat ctgagaaaat
      301 aacaaagcag cagtgtatgc gtgcaatgat ttttcattct gtttcgcttc agctctgccc
      361 ctgcaacaga ggatctaatc aatctgccgg ctattaagtt tgttaattga taatgcatac
      421 taattaggct gtgcgcagtt acttaagaga ctttgctaag gtgattgtag gcacaagtcc
      481 aaatggagtt taaagtattc tgtgtgaggt taaaacccat caaccagaat agatggattt
      541 tatattataa cagaaggcac aatataccca taagtattta atgtattgca tggttatcca
      601 ttgttactcc taagtctacc gaacaattaa aaaaaaaata acctccaaaa aatgtaactg
      661 tatgaatatg tagaaatagt agagatgaag ggaagctgaa gctgaaccag tcttaaaata
      721 aatattcatt ttcacactta tgtccaggaa aaatagtacg tagttctgct gcaagggagg
      781 agcaagcata acaagaactc agcctaatct agctttatga actttgacaa taagc
//
LOCUS       KCOD01002695             555 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 299979pyr ultra-conserved element
            locus uce-4396, sequence.
ACCESSION   KCOD01002695
VERSION     KCOD01002695.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 555)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 555)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..555
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="299979pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>555
                     /note="ultra-conserved element locus uce-4396"
BASE COUNT          209 a           96 c           89 g          161 t
ORIGIN      
        1 aaaatgattt aattaaaaac actagatgaa ataaatgttt taggcaacta gcaacaaaat
       61 gggaaaatac catgtgtttg gagttttagt gccctctgag tgctggaatt tatttgcagc
      121 aagcagaaaa tagacagcaa gcataaaaat tcagcagatt cccactagta aaattattta
      181 tcaagctaac aagggaggaa cccttctagt agcaacaagc cagcaaggaa aagacgtgcc
      241 tttatatttt acctttgggt tagcacacca gtaaaaatgc caactgacaa gcacttcaca
      301 taaacatttc tttctaaatg agctgccttg ttagtaagca aaggagcagt acagtcaaca
      361 gacagaggat gaatactaca ttgctgcata ttacaggaaa atataaataa aaataatgtt
      421 gatgcataaa tgactttaat gaattaacac ttcattttgc atttaaatta actgctataa
      481 atctatctta gcttcaatcc ttccaagaaa gaatacatgt cagttatcta ttatttacat
      541 ctttcttacc tctgg
//
LOCUS       KCOD01002696             750 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 300089pyr ultra-conserved element
            locus uce-7869, sequence.
ACCESSION   KCOD01002696
VERSION     KCOD01002696.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 750)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 750)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..750
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="300089pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>750
                     /note="ultra-conserved element locus uce-7869"
BASE COUNT          208 a          136 c          150 g          256 t
ORIGIN      
        1 attccatctg ttgaaggctt atttagttct ctttctcaag agcacagaaa gtactaaaat
       61 gaatctgaga atgtttacag ctaggtttct tatgacccag gtcatattgt tgtcttgaat
      121 cagttttctc tctcgtcctc tactgaaaac ttcttaatct tgcagggtta aataaaagga
      181 ggaatgcagt gcaaggaaga ttccttttat gcaaggcgca gggatgactg aaagtgcctg
      241 tgggcatttg gtccccattg gctctctcag cgaatgcaat gatgcccacg gatagcctgt
      301 attgttgtca gttaaatggg atcatgagtg tctgaaaggt gtttgagaat gaactgaaaa
      361 tcattttcac aagtggatga ttacttctgc cacatgttaa ccgaactcta tcagagtggc
      421 ccagattttt gagactgcat taattgctct ttcaaccttg actgaggttt ctctttaaga
      481 aaggcctttg ctggactaaa ctgctacacg tattgatttt tctttctata tttttttcat
      541 tgtttgtgat aaatgaagcc ttttacaagt agagaattta tcattcaaga tgtagataga
      601 ttgcttcatt ccttagaata aaaaggctgg tctaaaaatg atctctgtag aaggagtaag
      661 tccattctca tttctccctc agtgaatagc tccggtattc tgcacacaat tatgtttttc
      721 agctattcat tagtgctgac atcaaaaagt
//
LOCUS       KCOD01002697             532 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 300194pyr ultra-conserved element
            locus uce-4632, sequence.
ACCESSION   KCOD01002697
VERSION     KCOD01002697.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 532)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 532)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="300194pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>532
                     /note="ultra-conserved element locus uce-4632"
BASE COUNT          169 a           93 c          113 g          157 t
ORIGIN      
        1 ccatctctta gcatctgtat ttcgcccaaa gctttaaatc agagcagaga actttgcata
       61 gtgcagtgtg ctacaaccac ttgatggcag cctttgattt ggtacatgcc tcattagctg
      121 gagcacagtg cagtgtggct gtagtatttg taatggaata acacgtaaga actaaagact
      181 gcaaggtatc tggttaatgt agagatgaaa tgaatgaaac agcaaggcta agctttcctg
      241 acccttcatg agagaataga tgaaaaaagg aagaatgagg tattgtgccg aagggagatg
      301 atgaaattca agatccacac acataatctc tggctcagcc tctgaaatgt taatccctgg
      361 ctagaattat ttgagctgta gattgcaatt tatcatcaaa atggcactgt gtcaaacaat
      421 acttcttgta tgtgtgatgt ttagaactat ccaattttaa tataaaatgg ttcacagagc
      481 actgtctaac atttaagtag caactcgtta agctcgggat atttttgctt at
//
LOCUS       KCOD01002698             698 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 300304pyr ultra-conserved element
            locus uce-5586, sequence.
ACCESSION   KCOD01002698
VERSION     KCOD01002698.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 698)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 698)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..698
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="300304pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>698
                     /note="ultra-conserved element locus uce-5586"
BASE COUNT          167 a          167 c          183 g          181 t
ORIGIN      
        1 ttcccattgc tctgaactct tgcatggctt acccagagag ctcagtgcta tgagctcttg
       61 ggggtgttca ctggaggttt agctttcaag agtctcaccg tcaaaatatc tggtaaagct
      121 gtcttgttgc ctctccctct gctcacacct tctgttctgc tgttcccctt cagcccactc
      181 tctatgcatc taatggagta atcccgttag gtgcttgcag cgggtgctgc cgaatttgct
      241 tgcaaacgcc tgtgccaggt cgagtgtcat tgccagcagc actcttggcg ggatgaaggt
      301 tgcattagcg aacagtaatt gaaatgcaaa ataacatttt gatcgagcga gcaggctgtt
      361 tatttatcag atcaatagcc aaaatgcccc atctggagaa gtcagcgtga taacaagtga
      421 tagcattcca agggcaaagg gaacgagcac agcagggagg acaccgtcag ggtgggctgg
      481 ttttggttgg gtcacaccag gccatcagtt gctgaaattt ttgggtccct actttaagga
      541 gggcccccct cctagttgca tcagcaaagg gtttcagacc tctggaggga ggacaaactt
      601 aaatatggga taggaccgcc tgcagacata tgtaaagtga ggtcttcttc ctcccatgga
      661 tagacacagg actgtgcctc aaggtgcaga ctgcggaa
//
LOCUS       KCOD01002699             822 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 300414pyr ultra-conserved element
            locus uce-1576, sequence.
ACCESSION   KCOD01002699
VERSION     KCOD01002699.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 822)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 822)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..822
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="300414pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>822
                     /note="ultra-conserved element locus uce-1576"
BASE COUNT          271 a          160 c          138 g          253 t
ORIGIN      
        1 aaggcactat tacacattga actgattatt gttgtttgtt gctgttaaca cagacaagaa
       61 accctcctgg cagggaaaca acttctttgc taataagtat tcataatttg tatctcagca
      121 aaagatgtaa acatatatta tcattaaata ggctgtaatt ttaattgcct ataaatgtta
      181 ttaattctga ttgtgattat tcaataggta ataaagataa aggctgtcaa aattaattaa
      241 gtacatattc attaaattca aggtagcttc agtttcttta ttgcacaaat acaattaaca
      301 cttaatctga atctcagtaa gttacataat catgtgactc aaaataaagg gaggatacaa
      361 ccttggcctt ttacttttta catgggaaaa cattaatgat gctgacattg gagacaatta
      421 gacagtgtcg gccaattgtt tttagtcagc tttctctcac atctgtggtg tctacaagca
      481 agaagggcca ttgtttctgc aggcctccgt cgcgctttgg ctctttgtgc taaccgtcaa
      541 tctcttgctg aatatcaaag ctgtgaggaa attagaacag accagctcta ctgcaccaca
      601 ctaaagctta gcagggtgca tccactatgc tactaattag gcagtggcca acaaaataac
      661 ctgtcaatgt gtgcttgcca tttcccacac acctgcattt catacactaa taagcgtaca
      721 gccatggaga gaaaggaata actgctgaag tgtgaaaaat gaacaaaata taacaatgtt
      781 tctctcccca cctatactac tgccaattac catttaacat ta
//
LOCUS       KCOD01002700             693 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 300519pyr ultra-conserved element
            locus uce-3978, sequence.
ACCESSION   KCOD01002700
VERSION     KCOD01002700.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 693)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 693)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..693
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="300519pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>693
                     /note="ultra-conserved element locus uce-3978"
BASE COUNT          211 a          127 c          149 g          206 t
ORIGIN      
        1 aagttactgc aaatagagca tcatggggat gttccgcttc tgaaataggt ctttgaagta
       61 gcatacataa aaggtgggtg gatactccga aaagcctgga aaatttacaa taagtgctat
      121 acggacatta atacacttca ggaaatatat cagaagaaaa caactcagga atccttgact
      181 tctgatgctg caaatgataa tcatattgct gcagaaggtg taacggagga ttcgctaaac
      241 agactgaaag gtgctgttag ctttggatat ggactttttc atctttgcat atccatggtg
      301 cccccaaacc tgctcaaaat catcaacctg ctgggttttc ctggagaccg cctacagggg
      361 ctttcctcac tgatgtatgc aagtgaaagt aaggacatga aggccccttt agctacgtga
      421 gtagctatat tgaaatgctt tggtagataa cttagtacta aaagtaagta actaaaagtc
      481 aaaaccaaaa agtcatgttg ctttggaaac aacagcaggt tggtagttcg accatggttt
      541 agtaaattcg tcacttactc tctgctgtta attatttaca tgtgtttggg gttttttgct
      601 gtattcttaa gtacctgcag ttctaatgtc ctgtgattta aatgccagca gactaaataa
      661 aagctccctg aaggctgtgt atttacccga gtt
//
LOCUS       KCOD01002701             898 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 300630pyr ultra-conserved element
            locus uce-2940, sequence.
ACCESSION   KCOD01002701
VERSION     KCOD01002701.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 898)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 898)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..898
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="300630pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>898
                     /note="ultra-conserved element locus uce-2940"
BASE COUNT          294 a          165 c          194 g          245 t
ORIGIN      
        1 gaaaaatgtt tacattcttt ttaagaaaga agacatcttt agagctttta gagtccatta
       61 caaaaacagg aaagagaaca tttagcatta ctgatatgca tttttaaaat tatgataaat
      121 actcataaca tagttctcaa aaacacttta aatgtacagg cgtgctggtg atagctatct
      181 atattattct gttaaattta tacaaagtct gcctgtgata gatacgtatg ctagttttaa
      241 atcctttccc ttctctttat aagagagtca gttttggaac agctgtaaat tagtgatgag
      301 ctattagtga gctgtgtcat tatttaataa aaatggcttc tctcacctta ttttttatcc
      361 aggtccctga caggctggat gaaatgagat ccccatgtag caattgccat ggaaacctgt
      421 gactccccta ctatctcaag gcaggaaaat gggcagagca catcaaagct gtgtggaacg
      481 acacaacttg ataatgaggt gccagagaaa gttgcaggga tggagcctga cagggaaaac
      541 agctctacag atgacaacct gagaacggat gagcgcaaaa gtgaaatctt gctgggtttc
      601 agtgtagaga atgcagctgc cactcaggtt acctcagcaa aggagatacc ctgcaacgaa
      661 tgtgccactt cttttcccag tttacagaaa tacatggaac accactgtcc taacgcccgc
      721 cttcctgtct tgaaggacga caatgagagt gaaataagtg agttagagga cagtgatgtg
      781 gagaatttaa caggggaaat agtttaccag cctgatgggt cagcatatat aattgaggac
      841 tccaaagaaa gtgggcagaa tgcacagact ggagcaaata gtaaactctt ttctacag
//
LOCUS       KCOD01002702             603 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 300743pyr ultra-conserved element
            locus uce-2815, sequence.
ACCESSION   KCOD01002702
VERSION     KCOD01002702.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 603)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 603)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="300743pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>603
                     /note="ultra-conserved element locus uce-2815"
BASE COUNT          228 a           94 c           98 g          183 t
ORIGIN      
        1 cctataaaca aatcagctta agcctaatga aatcttgttt ttgtacatta atgtacaaag
       61 gaaagagttc agggtaaaca gacttgtagt atacattgtt tagagactat tgactttcga
      121 attagcctgc ttttcaaata tttcatgtca aaaatatagt caaaatgcaa atgtagcata
      181 aacggctcta taataaatgc tcattcaaca tttattcttt cccaaatcat cttttaaagc
      241 tctttcatgc taatgtctag aagatgtgac attagaaaaa ttgctttgac atgctaaggg
      301 gctccaagat taacaaaaag agaaagaaca agataaagct ttcaaaagac ctatttcaga
      361 ggaattatta cttcctttga aagtcttcca aggttgcagt gcatttaagc ttgttggcat
      421 acatgtaaat gaaggactac aaaagtactg cactaaatac aacttgaatt aaaccttcag
      481 gctaatgtta aagaataagg atgaaggcca catcctaggc tggcaacaac tcatttaaat
      541 taaagttctt tatttgagga tgtaagggag aaaaatcaat acaagaaatt ataaatgtaa
      601 ttc
//
LOCUS       KCOD01002703             504 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 300853pyr ultra-conserved element
            locus uce-6943, sequence.
ACCESSION   KCOD01002703
VERSION     KCOD01002703.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 504)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 504)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..504
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="300853pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>504
                     /note="ultra-conserved element locus uce-6943"
BASE COUNT          159 a          103 c           98 g          144 t
ORIGIN      
        1 aacattgact ttgctgccca tctgaaatgg tataatgttc tctatttcta tcatgtgggt
       61 atcagttcca agttggaaac cagccttctc tcataattca agctggggct gtgctgatgc
      121 aaaccttctc agatattata agccagtatg agctcaaaaa aagaattcac tgctcaaggc
      181 caaatagctt caaagctaac aatcctccag agtcggtgtg aaagtgttga aactgtcaat
      241 gtcaacttac accatgcata gtgagtgtaa aacttcaata atgacatcac gaagaaaagg
      301 acaaagggca ggcactacac aggaaagtgc cagtgctctt caaatctttg aaaccttcaa
      361 ggatttatct ggactaacac ttctacacat agtcattggg gtcttaggct atactgatta
      421 aggatttagc ttattcaaag gctctcactg atagcaagga tgacaaggtt tcagcagtta
      481 tattggattc cattagcttt cact
//
LOCUS       KCOD01002704             321 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 300953pyr ultra-conserved element
            locus uce-7691, sequence.
ACCESSION   KCOD01002704
VERSION     KCOD01002704.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 321)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 321)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..321
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="300953pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>321
                     /note="ultra-conserved element locus uce-7691"
BASE COUNT           99 a           70 c           49 g          103 t
ORIGIN      
        1 tctagtatct tagtatttgc actccattct tctaacaaaa gacaatttgc gcgtgtgcac
       61 tcttgcttat cacctcatct ggcagccgct ttccggtcca gcagacacta acatctaatg
      121 agacaaactt cccattttca gactaatcag tcggctgcac taattgcaaa tgcaaatatg
      181 caaatttata ttaattaatt actctgctaa ttagttctgc agtctttttg gggtaataaa
      241 tcattgtgca gtgaaaggga aacacgtcct gtcccatttc actccacata aaaatttaat
      301 gtgctaattg aagaaaatat a
//
LOCUS       KCOD01002705             715 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 301061pyr ultra-conserved element
            locus uce-7372, sequence.
ACCESSION   KCOD01002705
VERSION     KCOD01002705.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 715)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 715)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..715
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="301061pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>715
                     /note="ultra-conserved element locus uce-7372"
BASE COUNT          190 a          185 c          145 g          195 t
ORIGIN      
        1 acatatatca ccaccaacca gcatgtaaat tttagtcagc tactggacta gtcttttaaa
       61 gaagttgaaa aatggccctg catcctcaaa ggacacacct gttatctgaa acagttttta
      121 accagcttgt taagcagctt tgacagatca aagaccctgg acaatgggca caaactttaa
      181 caatagttta gccttgagca aaagcttctg tcaaagcaag gcttgtgcca gtagtattat
      241 ggcctgcaat tgaaaataaa ttttacttga ataagtacct cagcccgatc agaggcactg
      301 ccgccaggga gacaaaagca gttggggata agttattgac tccactgaca gcatgaatga
      361 agttcattat gccagcccac tcttggtaaa tgtgtcaggt tttaaactga attaggtggc
      421 aggtgcatgg accattttcc tgcccccctt gagacagtag agggccagtc atcacctgat
      481 tctacagaca aatgtttaga tttagttttc atatcgcaca ggcacactga cagcatattt
      541 aaatcataaa taaggtttcc tgaacaccct tgtctatccc actttctctc tccgtcccct
      601 gtagctggct ggccgtgctc ccatctcctt gcctgctgga ccctggaggt gcatttgcct
      661 cccctccacc gcccctgccc gcccttctgt tcctatctgc cttggggacg tgcag
//
LOCUS       KCOD01002706             758 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 301171pyr ultra-conserved element
            locus uce-4303, sequence.
ACCESSION   KCOD01002706
VERSION     KCOD01002706.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 758)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 758)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..758
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="301171pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>758
                     /note="ultra-conserved element locus uce-4303"
BASE COUNT          268 a          112 c          185 g          193 t
ORIGIN      
        1 tgtcccaatt ttaatgcctg agaaaagggg gggtggggaa ggctgtctca ctgaaagaaa
       61 attaatttgt tttattgggc actgaaaagc caagcctttt gtcaaacaga gaagcaaaca
      121 tatatttgga gggagagcta ggtcactagt taaatgtcaa ggtctgctaa aatcaaaagg
      181 taggaggggt gggtgacaat gaaatctaag tagaaaacca taaatgtaaa gaaacaccac
      241 gatttctggg ctggggtgga atgagaaaaa tggccaaaga caaagatagg cagcctgggt
      301 ctggaagtaa ttacagccaa gtgaagacaa ctgaattcca tattactttg gtggatgtct
      361 gtaaaggcag tttggggagg tattttggta aggtttactt tttggagctt agcaacataa
      421 atttgttgtc actgaactat taaataaaat agacacatgt tggcaaagag tgcagagccg
      481 agggatggaa ctgattaagg gacagcctat gaaataatag cttaaatggg cccactgcag
      541 gattttaata tcccatgaca acactcaatt gtcaaattct gctggagtgt ccaggatgct
      601 actaaaatta agccagaaat tcctagattt attctataca gctaagaaca ggaaatgcca
      661 gtaagctgtg agaatcggag caagaaacaa gaaactggga agaaaagagg ataaatttta
      721 tgagatttct gccattaaat ctataacaaa tgtctttc
//
LOCUS       KCOD01002707             601 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 301277pyr ultra-conserved element
            locus uce-7924, sequence.
ACCESSION   KCOD01002707
VERSION     KCOD01002707.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 601)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="301277pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>601
                     /note="ultra-conserved element locus uce-7924"
BASE COUNT          135 a          124 c          116 g          226 t
ORIGIN      
        1 gtggaagaag ggagtcatgg ttgggtttgt gctgaagggg catgtatatc tctgaggttc
       61 ttgtttgagg gaagcacctt gatgagcatt tgaagagtaa gtattgcact gttttaactt
      121 tgcttcaggt ttggataatg gaggggtgaa gttaatgact aatgggaaga gtaggcagct
      181 ctttctttac agtctagatg gcatggttcc ccatagagtc ctggtcatat tgtcctcttt
      241 ctcactttgt gtgtctcagg tgccccacgc ctttttttga aaaactaaca ctagaccatt
      301 catgcaatgt gtcattttta ctaaccaact aatgtactaa caccctaacg actcatcttt
      361 gcttttagtt attttaatta acaatcgttc tgttcacgat tttttaattt cctttcttcc
      421 cccttttccg caaagcactc aggcattgga cacgctatgg taaacaaact acattgtctg
      481 gtagatatca ttcttattgt ctcttttttt gggtttgccg tgtgttacct gccttttcct
      541 ccccctaccc gctcttttac tgcttccttt aattttattc tattttcatt gaaaacactt
      601 t
//
LOCUS       KCOD01002708             616 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 301384pyr ultra-conserved element
            locus uce-4932, sequence.
ACCESSION   KCOD01002708
VERSION     KCOD01002708.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 616)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 616)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..616
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="301384pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>616
                     /note="ultra-conserved element locus uce-4932"
BASE COUNT          213 a          108 c          109 g          186 t
ORIGIN      
        1 tttagtctgc catccaatgg ttttatttct ttacattgac aggaaagaaa ttttaataca
       61 gtactgtgta tttactttat ctgcttgtct ttacaaatca ctctgcaatc ccggggtttg
      121 gtatgagaca gagagagaga gagagcaaga agtagtattt atagtaaaac atgggtagtc
      181 aatagcatgt gggaaaacaa ctgaatctga aaatggtccc aaaggtaatt tgcaaatctg
      241 ctgaaatccc gaacaagctt tgatttaacc gaagcttgaa atggctttta tttactgtct
      301 attgtggaat aaatgacatc tcataaacag gctttatcca ttaccacaga atggcgatca
      361 ctgtgttagg gacattttat cctcttgata taaaacaaga tatgctatag tgtgttatta
      421 caaatagaaa aatcaatgct gagacacaca cctctgaaat ttcatttttg cggaacccca
      481 ttttcaaaaa atgtattctc taataaaaac gtctccataa ccagggggat ttacaaaaca
      541 ctgagcaaca aagaacaata acaaacaatg aataaagtgg ctccatcctg agtctttttg
      601 ctgtacatta gtcaca
//
LOCUS       KCOD01002709             425 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 301491pyr ultra-conserved element
            locus uce-3337, sequence.
ACCESSION   KCOD01002709
VERSION     KCOD01002709.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 425)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 425)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..425
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="301491pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>425
                     /note="ultra-conserved element locus uce-3337"
BASE COUNT          105 a           84 c          108 g          128 t
ORIGIN      
        1 ctgtaacaga ttacatgatg tattactgtt atgtgagtca tgctttaaat gtctgttgtt
       61 gggaactgta ataaaccttg atccatcaaa ccaataagac ctgcagtatt ggtgtcaaag
      121 gaaattaatt tcctggctgg cttgtgtttt tctctgaggc agatattgat gagtgtgcag
      181 aggggatcat tgagtgtcac aaccattcac gctgtgttaa cctcccaggg tggtaccact
      241 gtgagtgcag aagcggtttc catgacaatg gaagctattc tccttccggg gagtcctgtg
      301 ttggtaagca atgatctgtg catggtgttc ccaagtgact gtgtttcagg ccagaaactg
      361 cactgctccg tttatcagag caagtggctg tgaaaccaca ctttctgggg agcataattg
      421 gccac
//
LOCUS       KCOD01002710             713 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 301596pyr ultra-conserved element
            locus uce-3393, sequence.
ACCESSION   KCOD01002710
VERSION     KCOD01002710.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 713)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 713)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..713
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="301596pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>713
                     /note="ultra-conserved element locus uce-3393"
BASE COUNT          209 a          156 c          121 g          227 t
ORIGIN      
        1 ccattctaga aattcaacac caagtgcctt cattcctatc aactctgcag cccactcaca
       61 cttccagatc aacctaaaag gaagaaattt aaacccagtc tttttacctt aattcctttc
      121 actcttccaa gtggagcttt tccttctagg tcacgtgctg taagcactag gtgactcatg
      181 aaaaccatgt gctactttta tactacagat aaaaattaaa gtaaacttca ctttgtaaca
      241 tttccagttc attcacaaac acaggcatta actccagtca ggagagaatt gaggctttgt
      301 cattcctttt atattgttgt ggattagtgt ttcttttaaa tgaaaacagc ccctttgggt
      361 tgcttgcctg gttagccatg gcaggaagac aaacgatttt tacagtatca gacatgcggt
      421 ttcctgtctg tgtttaactt tgagcagaac atcacagcca gctggtccat ggctcctcca
      481 gacaactaga taatagcctg taataatttt gcctttggaa tgactgtcat ccagatctat
      541 tctgtacatt gtttcttgta caccagagca agaagcagtg gttttgcaca ttctatagtt
      601 ttagagagca aggcaagagc tactctaaaa aagcctgatc aaacagtgat tttaataatt
      661 tactagcaga aactgagata tttttcacct gtgaattgca gctttccttt caa
//
LOCUS       KCOD01002711             589 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 301708pyr ultra-conserved element
            locus uce-7222, sequence.
ACCESSION   KCOD01002711
VERSION     KCOD01002711.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 589)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 589)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..589
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="301708pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>589
                     /note="ultra-conserved element locus uce-7222"
BASE COUNT          171 a          122 c          119 g          177 t
ORIGIN      
        1 ctgacacagc tactaaaatt atgtattctt tactgctttc taagaagatt actaagccag
       61 ctgacccaaa cagtaattag acatcattca aaattaatag ccactacgat gataacaaaa
      121 ttcttctgat gggagaatca ttttaattaa tttaatcctt gttgaaagat cagctgtgcc
      181 cagtcctgct caccagtggg gcccatttgt ccctgtctgt ctccgtcacc taaagccagt
      241 gaatatgatc agtagccagc acttagggaa caataagaaa cagattgtac tgtcaggctt
      301 cattaaagat catcattagt attccaattt ggaaacagtc ctaacctttt accaattctt
      361 ttcagctgct ggttcagctg ctaaatgtaa gttgggtctg gctgatgcct gtcaggctgc
      421 agcttaagct cgggggttat gcaaccaggc tctaaatgat atcatgtgca gctgctagag
      481 tatttatggg caatggaact ttcttaaact tgaagcttaa caatgatgaa tggaaatgaa
      541 atggatatgg cactttcttt catcccactg ctgagtggtc ccgagggtg
//
LOCUS       KCOD01002712             533 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 301819pyr ultra-conserved element
            locus uce-2419, sequence.
ACCESSION   KCOD01002712
VERSION     KCOD01002712.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 533)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 533)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..533
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="301819pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>533
                     /note="ultra-conserved element locus uce-2419"
BASE COUNT          147 a          117 c          100 g          169 t
ORIGIN      
        1 gcttattgaa agaaattact cagctaacta aacttgtata tcttagagtc agacattttt
       61 tcggcatctt taccccattt atcaatgcac aattactgtc actattgtgt tgtgtcatta
      121 ggcgtaaggt tacaagtgcc agtcggaata aaaaaattgc agtaatgttg gcataatttt
      181 tcattatcat cttcattaac cacagctagt gggagtaaga gtttatcctt gctgttgtca
      241 ttgtcatgac aacgcttcca aagcttgtct gccgagagtt caccagatac aaaaacctga
      301 atgtcctcat tattccactt ctcacactct cacccatgcc aagggtgatc cgagatgcac
      361 agggcccttg atttatcccc tgtgatttct cttgacagcc tggtatggtg tctcagctta
      421 aggcaattgg tctgatttca cagtttaatt actgctaatc tgaaggagcg tggccaatgc
      481 taatgagcca gcagcaatca aagcagtaat ggctaaactc atcctgtttc att
//
LOCUS       KCOD01002713             481 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 301928pyr ultra-conserved element
            locus uce-3733, sequence.
ACCESSION   KCOD01002713
VERSION     KCOD01002713.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 481)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 481)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..481
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="301928pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>481
                     /note="ultra-conserved element locus uce-3733"
BASE COUNT          156 a           96 c           82 g          147 t
ORIGIN      
        1 tccttccacc catgccccca acattcacac tacactgtct ggctgttgca ccccccttta
       61 tctgcctcaa ccaatctcca aatgaatgca tgtctatcat ggccttagct ttgacactct
      121 ggatatattg attaatagtt gccctaagct ccttttagca aatcaaattt tcacttttag
      181 caaggatttc gcctctgatt tattcagcaa agtgaaatgc actaaattga ctttgacatt
      241 cagggaaaat ggctgaaaaa caaagagggg aggaaagaga tataaattgt gtggcagctg
      301 gagacttcaa gcataaaaga ggccgttttc tatagaatat cactggttaa tttggaaaca
      361 tgcatttaag cacgagtata aattattttc ttaaaattag attagactga ggatttggga
      421 tataataagg tttacttaga aaaatgcaat atattcaacc caaattcatc acttgctaat
      481 c
//
LOCUS       KCOD01002714             654 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 302039pyr ultra-conserved element
            locus uce-4593, sequence.
ACCESSION   KCOD01002714
VERSION     KCOD01002714.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 654)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="302039pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>654
                     /note="ultra-conserved element locus uce-4593"
BASE COUNT          197 a          141 c          113 g          203 t
ORIGIN      
        1 ttttttcaac ctctgggata ggaagaggct tcgcctcctt ccatgtgtgt atttattagt
       61 aattttgcac ggtataattg aagcctggct ttttaccaat cgtggcttaa gaggaaaact
      121 aacacaatgt aatgttttgt gtcttgtcca tgcagaccag tcactgaaaa ggtgcaaagc
      181 gctgctaaaa gtatgttttc tgaaattcaa agccttttaa gaaaggtaca caatgcaaga
      241 atacgcagct gcaattttaa aaaggctact gctcctttaa tgcccagctg gtcctgagat
      301 gtaataaaat tgacatattg attcctttga atttacaaat gcctgtttca taaactccat
      361 ctccaaagcc taggcatctt tagagcactg tcattttttt ctccaaatgg atcaattatg
      421 tgcccacgta atcctgttac ctgtgaaatc catgcatact tctcccattt gctgcagttc
      481 ccaggcggac aaacttgcat tatgtacgca taaacaaaca gagcattttc ctgatattag
      541 ggattgtttt caaagtgaaa agcaatctcc tgggtccttt actccccata cacagtgcgg
      601 tgttcctcca agtaacctat aattattaca caacacagca aatcattaaa aaaa
//
LOCUS       KCOD01002715             803 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 302151pyr ultra-conserved element
            locus uce-7383, sequence.
ACCESSION   KCOD01002715
VERSION     KCOD01002715.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 803)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 803)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..803
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="302151pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>803
                     /note="ultra-conserved element locus uce-7383"
BASE COUNT          251 a          123 c          157 g          272 t
ORIGIN      
        1 tgaaggtatt tcagctataa attatgtgct gaaaaatgac aatgttccct aatttgtctg
       61 tgtatagtga ggcatgatta tggagctggg ggcaggcgga gactgtggca tattcttcta
      121 atgggagttt tgtaagaaaa agtttaatac acagctcttg tctgaacaaa cctctcactg
      181 taaaatgttt acctttaatg acatgcgcta ttatttcatg attattttaa aatacactta
      241 aagagtttta catgttaacc agctactaag aatgccttaa tagacaacta atttttgtta
      301 gaggtgtctc gacaatttga attttatatg catgcattat gttttcttaa aatggggaaa
      361 ttatgcatct gaaggaatct gtctagaata atggggttct atagaggtta ctttaatcac
      421 gttcaccagc agttatagct gttttacatc ttatttgcaa caaaagggaa ctctaattat
      481 cttccaaaag agcataaaat ggtgtgcttt gctgctgatg taatgttgat tcgtgaatgc
      541 tgctgatcag aactgacaac taaatacatg tcacactttt aagaaatcag tggtggtgac
      601 aggataaccc tcttttgtga cctggggacc aggagatgag gtatatattt gcttgctaag
      661 tagaaacaat ttacagtttt tcactttgaa ataaaaatca aaatgctgtt atagatgggt
      721 tatcgataat ttttaacaat gcaccagctc tgttatgact tagaatctgc cttctgtaaa
      781 acagatctag tgcttgcaaa tcc
//
LOCUS       KCOD01002716             493 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 302263pyr ultra-conserved element
            locus uce-3583, sequence.
ACCESSION   KCOD01002716
VERSION     KCOD01002716.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 493)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 493)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..493
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="302263pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>493
                     /note="ultra-conserved element locus uce-3583"
BASE COUNT          182 a           70 c           81 g          160 t
ORIGIN      
        1 aaaaactttt cttctaatta cagtaagatt ttattgaatg catattatac atatagatca
       61 taataaaaaa aagactatta agattttaca gttcaagatt ttataggcaa tgggaacagt
      121 ggaagcctaa tgctttctga gaatcatatc tgcattagca agataaagga caatttagga
      181 agattacaaa agcaatgatt tagagtacaa cataaaaatc tgctgagaac taattcgcaa
      241 tgccagctgc tgctaagctt cttaatcttt atctagttca attaaaatct gaatgtttgg
      301 gatttcatta acaactgggg acttggaaat tacatgcact tttacactgt attcaactcc
      361 ttatacacgt tactggaagt tgcctgaaat gtcttcaggt agacttgaga tataattaaa
      421 acttaagtac ttaaaggata atgcagaggt aaaagaggat tattttaatt tttctgtcag
      481 atccaattga caa
//
LOCUS       KCOD01002717             410 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 302368pyr ultra-conserved element
            locus uce-1922, sequence.
ACCESSION   KCOD01002717
VERSION     KCOD01002717.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 410)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 410)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..410
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="302368pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>410
                     /note="ultra-conserved element locus uce-1922"
BASE COUNT          129 a           77 c           87 g          117 t
ORIGIN      
        1 ctgtaattaa cataactaca tttagatgct attcatgacc gataattcca acaccttgta
       61 aaaaaaaaaa ggttgcaagc tgtaaacatt ataaacatat tcaaataagc ttaacgcaat
      121 ctgccatgct tatttctgcc tagatcatgg accagcgaaa tggttaatgc aaatggattt
      181 ataatttgct ttggggggcc agtttcttct ccttatttat tagcccagct gatggggcag
      241 atttgatgag gcacttctgg aataattgag tcatcacaca aagaaggctg ctagcattca
      301 gagtggtttt atcagcagca agcaggcctg attactgaca attacactct gatccggtga
      361 tggaggagaa agagccaacg agtgggaaat gtccgtgttt ctatccagga
//
LOCUS       KCOD01002718             736 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 302478pyr ultra-conserved element
            locus uce-2613, sequence.
ACCESSION   KCOD01002718
VERSION     KCOD01002718.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 736)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 736)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="302478pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>736
                     /note="ultra-conserved element locus uce-2613"
BASE COUNT          194 a          161 c          186 g          195 t
ORIGIN      
        1 ttatccagta gaaggtgcaa gagtgtcatg ccctgttttc ctctcccagc caagaagatc
       61 caccaaagat cattctcaag gctggttgaa gctaattcct attgtgccgt taaaaacgaa
      121 cccaaaaggt gcattaaggc agctccgtag gccggatctc cgtccctgcg ccctttgtgt
      181 gcctgtctgt gccccacggg cctgttacaa tattggatga catgtttaca agttcgaaca
      241 tcttactttg tgcaactgca cagcttcctc gccgcccgag aacttccagc tctgtgtgtc
      301 tggcagagat gggggaattc gataaccttc cctctttggg tcttagggcg agctgaatgc
      361 gtctggcctg ccaaggcaca atttaatggg cttctgaaaa cactcaaaag gcagacagaa
      421 atgtgtggat gggcaggcag ccagggtgac ctgggggatg ggctgatttt aagcagggta
      481 aggtcgtgaa ggaatgtttg aggacaaagc tggctggggg agtgcactga aagcctaatg
      541 tttgactgga gtggatttac ggagcttgaa cctgactctg taacttaaga gcaaaagcat
      601 tcccacctgt ccagctttaa aggggaaatg gaaaatgtaa agaatatata attaatttca
      661 attacttttg cttggatatt atctttattt cctcaagttt cacatccagt gtaggaactc
      721 tagagaaaac agctca
//
LOCUS       KCOD01002719             499 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 302585pyr ultra-conserved element
            locus uce-7369, sequence.
ACCESSION   KCOD01002719
VERSION     KCOD01002719.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 499)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 499)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..499
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="302585pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>499
                     /note="ultra-conserved element locus uce-7369"
BASE COUNT          149 a           86 c          103 g          161 t
ORIGIN      
        1 gaagaatggt tatacatttc cctgaaccaa tgtaatataa aagatttact gttacagttt
       61 gtgtgtggcc aggcaatggc atatggaaaa catgtttcct gctatttaat ttaattactc
      121 taatcacgtg ccagccccgg gcatgtcatt ctggacctct gaggctcttt gtctgtcaaa
      181 gagatggaca atatcttggc tttgtttagt tgctctgcag gctgcagata aaaccactga
      241 aatactgact gtttgtttaa ccaaaacttt gcattttaac catttggctt tgattttttg
      301 ttttacaaga aaagatgaca ttttggcctt ggtgagctga aaaggaaata ttagggatat
      361 gaagaagaac tgtcactttc agggcttaat agatgaaaaa gaatactcta gccttctggt
      421 cagaaatcag ctttgttagc agaaacttaa gacacacatc actgttattt tagaattgcc
      481 tattagcaag ggcagctgg
//
LOCUS       KCOD01002720             513 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 302696pyr ultra-conserved element
            locus uce-6586, sequence.
ACCESSION   KCOD01002720
VERSION     KCOD01002720.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 513)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 513)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..513
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="302696pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>513
                     /note="ultra-conserved element locus uce-6586"
BASE COUNT          119 a          131 c          111 g          152 t
ORIGIN      
        1 tgaacatctc tcaggaggat ccaaccaggg tccagctttc ccttgaaaaa gtcttgagtg
       61 ggaatggttt ctagctctgc tgccttcttg gtatgtccag tctccctagg gagagacctg
      121 gtcgtgctcg ccccacagcg agccttgtgc acagctccac gcagcgaagc agggctctct
      181 gaatgcaaat ttcatttctg agccactggc gctgtttcaa gagccggcag cctccgagcc
      241 cttctcggtg ttacatatgt aacagcctca ttgaacttga catgtcaaat tcaggccatt
      301 tgtgcaaaat ctccctttaa taataccgtt tcatttcgct caaatgagac ttgaatgcat
      361 gtaaaatgga aaaggatatt taagcgctaa cattaggcag atgtcttgcc agaggccgat
      421 tgaatatatg agattttgaa gtgcttaaca cgttttcggt gctccctctt agaatatgtc
      481 acctggcttt cttttttctc cccctctttc cct
//
LOCUS       KCOD01002721             737 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 302810pyr ultra-conserved element
            locus uce-7761, sequence.
ACCESSION   KCOD01002721
VERSION     KCOD01002721.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 737)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 737)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..737
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="302810pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>737
                     /note="ultra-conserved element locus uce-7761"
BASE COUNT          170 a          175 c          175 g          217 t
ORIGIN      
        1 aaagtgggcc aagtccagcc ctggtgtaag cagctggtgg tgtacccagc ccagtatgct
       61 taagcaatag gaaattttta tctgtgtctt tcacctggca attgtccagg tgcccgggct
      121 ggaatgtgag gatgctggag gagaattagg ttattacatt tcctccttaa ttcttcatca
      181 gggctgccgc ctgtattttc tacagaaaaa tcaatgcatt ctgattctgt aatttcccat
      241 ggtgcctcgc cgggcgcgcg gtgtgccgtg ggaggtgaca tatccggtca tggcagcttg
      301 aactcttttt tccagtgaaa gaattcattg gaatttcaca acctttgcat gcttttgtga
      361 aaacactcat ttgtgtttgc gccaacctgc taatggcgga tgccggggct tgcgaatccc
      421 acctacattc ggtgctcgtt atggcatgga atgtgccgtt aataatgcat ctgtgaaact
      481 cagctgcgag ggagccaagt aattatccca ccgtagcgtt ccctgcttca gtgtcatcac
      541 aactggggct tcattaaaag tcctaacagt agagatgttg tgtggtgcag cctgtatata
      601 tattttttca tttaaattat cagcaatgcc atggctcaga ggtaatttga ctttttgaaa
      661 ccgtggagcc cctgtgaatt tccttcctcc tctccctctc gctgccgcac cagctgatca
      721 gccccagaag aacaaaa
//
LOCUS       KCOD01002722             265 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 302916pyr ultra-conserved element
            locus uce-6337, sequence.
ACCESSION   KCOD01002722
VERSION     KCOD01002722.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 265)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 265)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..265
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="302916pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>265
                     /note="ultra-conserved element locus uce-6337"
BASE COUNT           75 a           46 c           76 g           68 t
ORIGIN      
        1 ttccccctaa ttttttgcag acttttgccg cggatattta ttataaccgg ggaaacaaag
       61 cgacggtctt ttcccattct tacaggattg tctttgtcta gctgcttgtt ttgatgggtg
      121 taaaacaaat aagattagac tgagcagccg aactgaaagc gatagctggg aggaaaagcc
      181 aatgaaaggt tgccggggaa acgagcatag gggaagctga gtgggggagc aggtggcaat
      241 catgtgggaa tactgcaaac agtgt
//
LOCUS       KCOD01002723             690 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 303023pyr ultra-conserved element
            locus uce-2790, sequence.
ACCESSION   KCOD01002723
VERSION     KCOD01002723.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 690)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 690)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..690
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="303023pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>690
                     /note="ultra-conserved element locus uce-2790"
BASE COUNT          196 a          133 c          155 g          206 t
ORIGIN      
        1 gttgttgctt ataaaagtgg aaaatggacc tgataaaaat gtttagtctg tggagctgtg
       61 ttttatttat catatcacaa tgttttgttg catcatggtc aaaatagaag cgaccttgct
      121 tgttcatgag tgctcaaagc ctagagataa gaggcaaagt aatagagtac aatagaaaga
      181 gtgtagtgta attatttgtg gcttgtcaag tgaagccctt tcaggcccca agtgattcaa
      241 atctgggaac tctgcacaat tctgtacact aaccatagcc agcatcagag aaatctcacc
      301 cagcttctcc gacagtactg aaattgcatc agtttgtcat gcactgagca tgccagcttc
      361 acacaatatc atttgcttgc aaatgggcct ggccccaacg ccctgagaca cattctttgg
      421 tatctgactc ttggcctgtg atttgtcatg tctctagtgc tatcggcgta aagtaatttt
      481 aatagattct gatggtttgc ttgtggaagg taaagaatgc actacagatt gtgtcaggta
      541 gctttctatg gcatgtagtt tggtgaaggc cctcatgatg gtgatagcca aacaaagagg
      601 atggagaaat gagaacccta ttttgaatgg tatttaacac tgcccttcct gctgtggaca
      661 tccttgcaaa ctcagcaggt ccaagaaatt
//
LOCUS       KCOD01002724             485 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 303132pyr ultra-conserved element
            locus uce-5132, sequence.
ACCESSION   KCOD01002724
VERSION     KCOD01002724.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 485)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 485)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..485
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="303132pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>485
                     /note="ultra-conserved element locus uce-5132"
BASE COUNT          159 a           93 c           92 g          141 t
ORIGIN      
        1 cacaacccag gcgggcattt acctctaaag atctgctttg ctttaatgaa ttattgcttt
       61 tcaccatgac gcagaagctg caacggatct taggaaagct catttaaatt tcaaggacct
      121 cttagggata gttgctaatg gttatgctaa ttggcatagg gtctgagtga cagttatgtc
      181 ctggaatgat tcgcaaatca cattttcttg gagcttatta gcagactcat taactgtaca
      241 acagtacatt actttcagaa attcagatct aagcagaaaa ttaaaattat ttgctaaatg
      301 acctaataaa attgaataaa atgtgctgag aaagtgaaaa ctgaggtata tcaggactcc
      361 agaatttgta ccgttgatgt tcacccattc ctctgggagt agctgggtga gcctcactta
      421 gaaacatatt tagatatgaa aaccaatgaa ctcaaatcaa cagcagcaaa tcccagctcc
      481 ttgca
//
LOCUS       KCOD01002725             552 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 303346pyr ultra-conserved element
            locus uce-7483, sequence.
ACCESSION   KCOD01002725
VERSION     KCOD01002725.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 552)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 552)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..552
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="303346pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>552
                     /note="ultra-conserved element locus uce-7483"
BASE COUNT          137 a          116 c          120 g          179 t
ORIGIN      
        1 gacatcaggg atgtgggatg tgttgattgt tctttctatt tcctctccct tgcagctgta
       61 gggctgtgcc agcgaaagcc cccgagagcg agctttagcc gctgctcctc tgtaactgca
      121 tcattacctc actccaaaca aagtcctttt tttttgtcaa tagaggatga aaacattatt
      181 ggattcagga gctcatagta gtcctgtacg cagctaggga tgaagaggat agatttatga
      241 aatggaccat ttcaaatggc attatcttcc cacagtgagg aacacctttc ataaatcatg
      301 ggagagcact tggaaaagaa agcatttgtt attcctgcca tatattgcta tgtgttcttg
      361 ggatggggga gaatcttctg tttgcattct tccccaattt tatcttacaa ttaccgtgaa
      421 tttttagctt acctttgttt agctgcagag acacactgag tttcagtttt cttgtgggta
      481 cgaagccaac tatttcttac acgcttccaa tattgcaggg cattctctgc ctcattatgt
      541 agcaggaggt ca
//
LOCUS       KCOD01002726             569 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 303456pyr ultra-conserved element
            locus uce-3028, sequence.
ACCESSION   KCOD01002726
VERSION     KCOD01002726.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 569)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 569)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..569
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="303456pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>569
                     /note="ultra-conserved element locus uce-3028"
BASE COUNT          189 a           98 c           97 g          185 t
ORIGIN      
        1 atgttatatt tgattactgg gatatcaata caatgaaagt ggagaaattt caacagtaat
       61 ttttttttta gtacatcatt tgtgcagagc tttataaaag atttttgttt ccaaagatgt
      121 tattggggtc cacatattct ttaacagatc tcagcattcc caggccaaca tcagagatgc
      181 tctccttcat ccagcgcttc cgcaatttgc ctactggaaa aacaaaaaca aagtgtttca
      241 atatatggca ggattctagg agccaatcaa tcttgtgacc atgaatgaat aaacactgtg
      301 tgataaatgc ttttattcaa aattgagaaa tgttttgctt tatttgattt attgagccca
      361 ccagactatc aagctcatta agctcagcat actcccagag gaggactgtg ttccacactg
      421 tctactttcc ttagaaacta tgaaatttag atgaagctta ggctgaagac aaggaatttt
      481 aaaagccaca aactaatttt aaaaagcaga agattacttt aattaaacca gttctggttt
      541 aaatagctgt tttctatgaa gaaggctta
//
LOCUS       KCOD01002727             303 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 303558pyr ultra-conserved element
            locus uce-1552, sequence.
ACCESSION   KCOD01002727
VERSION     KCOD01002727.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 303)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 303)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..303
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="303558pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>303
                     /note="ultra-conserved element locus uce-1552"
BASE COUNT           93 a           59 c           61 g           90 t
ORIGIN      
        1 atccttgatg gctgatgccc ttcagtgcca aatcagcatg atttatcata gccatctatt
       61 cagcacaaca gaagctggag gtgagctgca tggtgtacct cacacaatat gcataactag
      121 agctctgaac tttgaaggaa agcctcagag ctatttgcaa agtgctggtg cttagtgaat
      181 actaaattac atttaggaaa tagtctactg ctaccagtta tacttcattt ttattcttga
      241 cacagacacc taaatcagag aacagtaaca tttcagagat tatggtagca gtttgggtat
      301 gtt
//
LOCUS       KCOD01002728             424 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 303660pyr ultra-conserved element
            locus uce-4921, sequence.
ACCESSION   KCOD01002728
VERSION     KCOD01002728.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 424)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 424)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..424
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="303660pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>424
                     /note="ultra-conserved element locus uce-4921"
BASE COUNT          157 a           85 c           62 g          120 t
ORIGIN      
        1 ttcaagtcta aaaaaagcac agagaatgtt gtaaatgtaa tattttactt ttctgtatct
       61 atttcatcag tctgataaat tatctacaaa tgcataaaac ttaagcaaca tgtccaatgc
      121 actcagaatg gtcccaaact caattactta aagatttact gtacagtaaa caaatgggtg
      181 aaaaactgta atttattgaa actcataact caaaaaatat aagatgctgt agtgtacaat
      241 atgttacaca aagcaccctg gggtgcacat tcaagtcaag taataactcc atcacccccc
      301 aaaccctggt agttccatat acaatcatgc acatttactc ttcaagagga agcccccgat
      361 gtgttaaata gcaccaaaat cagcattgtt cattgaaggg gagctaaatt aacttggcca
      421 ttac
//
LOCUS       KCOD01002729             635 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 303765pyr ultra-conserved element
            locus uce-4124, sequence.
ACCESSION   KCOD01002729
VERSION     KCOD01002729.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 635)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 635)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..635
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="303765pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>635
                     /note="ultra-conserved element locus uce-4124"
BASE COUNT          210 a          103 c          122 g          200 t
ORIGIN      
        1 agataatctt cttaaagcct tccttaaatg ccatcacctc aagattgtaa ctatttatgt
       61 tttaccacta aaatgtgttg catgtttttt gttggagttt taaggatcag attgatgaag
      121 gagagttcag agccagacgt acagcacaag agacaaaggt ttagtaatga gttcaaaatt
      181 tacaaaacac agaagcaaat atggctttaa tacatgatgt gaccctttat aaggcttgaa
      241 attactcttc aaaaatcatt ctggcttgac ttcagagccg agtggattgt gggataccac
      301 agattgactt tgagtagtgg gttggtattg caggaatttt ttaatttcct gtaactcaca
      361 acaattttct tccagttaga ccttatcctg ctgcagagta tttactgaac aatttagtac
      421 agtgtataag ccagatcaga ggcacatgca tgcactcata cacttacaca cacagaaaaa
      481 ttatagtatt aatagtcaaa ttcaaaatga tcaaaagaga aaggctcagt gcagtgatgt
      541 ttacatttta atgtgcatgc tgtatttaac atctaactag tgatggaaga agaaactttg
      601 ggctgttttt aagggaacaa ttgttcaagc tgcat
//
LOCUS       KCOD01002730             638 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 303877pyr ultra-conserved element
            locus uce-1708, sequence.
ACCESSION   KCOD01002730
VERSION     KCOD01002730.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 638)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 638)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..638
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="303877pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>638
                     /note="ultra-conserved element locus uce-1708"
BASE COUNT          197 a          137 c           96 g          208 t
ORIGIN      
        1 gatgaacaac cacattactg aggagtattt ttagtggcaa caaaatcata accatcaaaa
       61 gaatgttcac tgcttgcagt tttctatttc atttcttttc ccaatcatgt ctcaacaatc
      121 tcttgaacca agcagaaaaa tgatcagaaa agctgtgtat ctctctactc atggaataat
      181 aagcttcctt tatgcaattt gttagaggtt cattctagaa cgaccttttt cttatattat
      241 ccctttaaat catcactctt tacagctgaa tacacatgaa atgctctgga gttgtactaa
      301 ggttaagcat taaagttgca tgtcaaaaat cgtattagtc aaaatcatta ttataagcca
      361 ttctacactc aaagaacctt gaaaaaatta aggttatgca gagagtttgt gagccaactc
      421 tttaatcaca cactgaactt cagacatata gtttagtaca attagcagca ctgggctaat
      481 ggttatgggt taaacgctac ttacaagcac ttttgtttgt ttaatttagt ccagactcta
      541 gctttcaatc tccctccgct cccccccttc tctttgctct ccccctgtgc accactggct
      601 atagcaacac caattggtaa aaatgagact gtgatgtt
//
LOCUS       KCOD01002731             625 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 303990pyr ultra-conserved element
            locus uce-1736, sequence.
ACCESSION   KCOD01002731
VERSION     KCOD01002731.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 625)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="303990pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>625
                     /note="ultra-conserved element locus uce-1736"
BASE COUNT          181 a          115 c          167 g          162 t
ORIGIN      
        1 tggctgcagc tgaaaagctt ctgagaaaaa aagtcattgc agaggtgctc aggacacaag
       61 caagcacagt actggcttgt tttcccttaa aggtagaagc cctcatctcc agggagacag
      121 tgttggtttc gtgggttggg aagaatcttc cccagcaaag attttggtga gcagtgggta
      181 gagcatgccg tgggagacta ccgcgggctg atatgagaga tgatatcaga gattagttaa
      241 ccgtatgggc tgagtccctg gggaggtgtg tgaaatgaat cagattaaac aaaattgata
      301 atgtgaatac ttaatcaaac agacaaaggt agtctgcaca gctaattagg ggcaaataga
      361 gcgtccctct tgtacctcat ttaactgaca aattgtgcag acagttttaa tgggagtctg
      421 tttagcaaag agaaggctgt acagttgaca gcttggcaaa atgtggtttc tgtaacacca
      481 catgatgctt atggaaatta gcctggtgca gctgagctca gagtaggtaa gagctgccca
      541 aactctagta aaatggtaaa acggaccttt tgtcctctgt ttctgacttc ttaaagggac
      601 ctggacgctt ttctgcaagc tggca
//
LOCUS       KCOD01002732             596 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 304097pyr ultra-conserved element
            locus uce-2835, sequence.
ACCESSION   KCOD01002732
VERSION     KCOD01002732.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 596)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 596)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..596
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="304097pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>596
                     /note="ultra-conserved element locus uce-2835"
BASE COUNT          202 a          118 c          107 g          169 t
ORIGIN      
        1 taaacagata aagttaagaa gatttcttgc aaagatggac tccctagttt caaagatggc
       61 cagactcctc cctccacagg tgaggtcagc aaattggtgg agacattaca gagattgact
      121 ttcaggggag gaaaaactaa ttctgagcac cattacccct cacctctgaa ccaagaaaga
      181 ctttacgtgg tgtcataatt tagcaaatta cttcctcaaa ggaaggtcaa acattttacc
      241 attcgatcaa taggaagcga cttacaaatc atgtgtattg atcattgtaa tcattcagag
      301 gaatgtaggg cagacactaa aatcacatgc acttagtctt aattgcccac attaaagcaa
      361 ttatgtccca aaactgtcat tgtctaatgc tatgcacact acccagcatg gtaactttta
      421 gccatacata tttaatcata aatcagcctc ttaggtctat tgcactaaag acttacgata
      481 ttgctgtaat tatgcaaata taaccatgtc tcaatgtgta agatcatgtt gctttgggga
      541 gccaagtgga ggaaaataaa gccctatatt aatgcagctg gtatttaata catata
//
LOCUS       KCOD01002733             490 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 304206pyr ultra-conserved element
            locus uce-1295, sequence.
ACCESSION   KCOD01002733
VERSION     KCOD01002733.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 490)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 490)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..490
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="304206pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>490
                     /note="ultra-conserved element locus uce-1295"
BASE COUNT          165 a           68 c           83 g          174 t
ORIGIN      
        1 atagtcctac aaggaattcc cagtaaaaca gtgttgcagt tctacagtat attaataccg
       61 ttggaaagtg ttatccaatg ggcagatgtt aacttaaagt gcacattgtt tggaaaagga
      121 gttaattaac aacttattaa ttggatagaa agtctgaaac tgttgtactt ctagcaaata
      181 cataattttc ttcaagtatt attaaagcgt ttttgttgta cctattaaag attcttgtct
      241 ctaagttaat ttcattatgc taataagcta tcatcgttac agaacctaag ctttgatcca
      301 tgttaattgt cgtgatcttc aaagacaaag tcgccactta ctttaaatga attttacatc
      361 tttttaaaga atcacacgga aattagggga agtaattaat tttttattat gtgtctcaat
      421 atttttaagg gaggaagtca atggtattgg ctagaattca ttttaacatt taactaggga
      481 aaacagcatg
//
LOCUS       KCOD01002734             605 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 304316pyr ultra-conserved element
            locus uce-7582, sequence.
ACCESSION   KCOD01002734
VERSION     KCOD01002734.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 605)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 605)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..605
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="304316pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>605
                     /note="ultra-conserved element locus uce-7582"
BASE COUNT          209 a          122 c          102 g          172 t
ORIGIN      
        1 atccttaaga attcaatagg aaaatctttg tttaggcagt acatttaaga agaattttaa
       61 gaagtgataa aagcagtgaa gtctaaaatt gcacagagaa catctgagac tgagcacaat
      121 attatcagtg tcagcatact gatgacccag atggtatttg tatgtttgaa gtatgacatc
      181 tatactcctc tgtcatccaa cacaagtaat taacaataat caagtgggtg ttaattggat
      241 ataatggaac aatctccagt cagcctgagc ctactatttg cctcttacta gtaattatga
      301 acactaagta ctcacgctaa tctccttctt ctcgctgaag ccaaacagag gtgcagtatt
      361 tactcagctg atagcttgtt ttgtctgcaa tttaatctgt tttaagccaa gaaactcata
      421 atttgcagag ccgtcaccag ctgccaggat cacacaaaag aattcaaggc cctagatgac
      481 agcaattcag tatatataat ccaggggaat aaagaacaat cattaattaa actgacctgt
      541 tacaaccaca gtcactgaaa attacccatt tgtgtaacac ctgataagct cataactctg
      601 accca
//
LOCUS       KCOD01002735             576 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 304421pyr ultra-conserved element
            locus uce-5696, sequence.
ACCESSION   KCOD01002735
VERSION     KCOD01002735.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 576)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 576)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..576
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="304421pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>576
                     /note="ultra-conserved element locus uce-5696"
BASE COUNT          212 a           88 c           97 g          179 t
ORIGIN      
        1 ctcattaatg ccactttttc ttagaatctt ttaaatatgt atctttcatt aaaattctaa
       61 tttttgataa actgaaagca agatctggtg acaaagaggt tataattaat ctagcaagag
      121 cagtcaaaga aatccatgta attgaaagcg aatgtatgaa tgaggagact aatgctacag
      181 aacttccaaa gccttttctg tggaattaat actacagaga cccataaaag attaatcaag
      241 ataagcaatc gataacttct caagtgctaa taagcactgc catgttccat gatatgttga
      301 gcagtttatc atgtttaacc atatgaagat ttatagaaaa tccattgtta aaaccaaagg
      361 atgaggtaat gcaccactta gtaaatgaag cgcaattaaa atttatgctt gatattacac
      421 attcaaaaga tctgtaaaaa tcattttgat ttcctctttt taaaggaacg aaattaaggt
      481 actagttgta cctttcagtc agtagtcctg agagaacagt gaagacagca atggcattct
      541 tcaagttaat atctgctttc aagtgaaagg tgatga
//
LOCUS       KCOD01002736             529 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 304530pyr ultra-conserved element
            locus uce-4330, sequence.
ACCESSION   KCOD01002736
VERSION     KCOD01002736.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 529)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 529)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="304530pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>529
                     /note="ultra-conserved element locus uce-4330"
BASE COUNT          183 a          112 c          103 g          131 t
ORIGIN      
        1 gacattcctt caggtcaaaa ttaaaataaa aggcagagac gcggcgtgca cctctggtta
       61 gactgctggc ttgctcaatg cagaggctgc ctgcagttaa tcagccctct ttctccacta
      121 actgtcactg caaacaaagg aattagcaga aggtctgtag ggagcattga gataatttgg
      181 ctggctgaag aaaagaaaag aaaagcaaaa caaaattact gaaatttact tgcactgacc
      241 tctccataaa tatttagata taatcatcat taccttggag taaattaagt tataaacagt
      301 ctccacaatt gcacatgatg aatgcgtatc ggcatcagag agcactttat tgcaagttaa
      361 tgtggaaaca gaacacctca atcaatcagg atacagaaga gctgtcttat gatatcagcc
      421 catctcaacc tattcataca ggacaccgta ccgcccacac acgtcctatt aacaaataca
      481 tatgaacccc agaagatggt aagatgtatg tttgtggagc tggaataac
//
LOCUS       KCOD01002737             739 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 304642pyr ultra-conserved element
            locus uce-5565, sequence.
ACCESSION   KCOD01002737
VERSION     KCOD01002737.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 739)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 739)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..739
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="304642pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>739
                     /note="ultra-conserved element locus uce-5565"
BASE COUNT          208 a          130 c          147 g          254 t
ORIGIN      
        1 aaatgttcct atgtcttcat agaaaaaggg gagagaaggg gcaaaccgac ttactaagaa
       61 atgtttgatt gatatgtaaa gtaatctgtt cctgaagaga gctattcctg aaggaaccac
      121 acagcataca taaatcccgt tacttctctg tctccagatc tgtttgtcat tgtgcttgtg
      181 gtacgcatag gtagattaat agatacatac atagaatcct acgtacttac tgctttaagc
      241 tattgcatgt tcaaacagat gttgaagcca agattatttt tgcatgtgct agtagtgtgc
      301 aaacctttta aaggcatcta tgaattatta ctttggttca gcatgagtgc agtaagaaga
      361 aatgtacctc atctgtaata cactgtgtag actaatatca gcttcttttt ttcttatatt
      421 gcagtgagat attgatctgg taaaatggta ccatattgga gctgtctgtt gtggtattca
      481 tcatgctgtc acatccctag tgccttggag ttattgagaa gcggaattga gggagttctg
      541 tcattgtgtg ttgcaatcca ttcataagga agttcactaa aacatctgaa gtagtgttct
      601 tgcttattta tttatttaca tctaatgaga accatttcac ttctgaggta cagaaccctc
      661 ctatttcagg cacagggaca ttgataggct tggttacctc tcctcagacg tctttctctt
      721 gtataacatt tgttcttta
//
LOCUS       KCOD01002738             406 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 304739pyr ultra-conserved element
            locus uce-3170, sequence.
ACCESSION   KCOD01002738
VERSION     KCOD01002738.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 406)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 406)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..406
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="304739pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>406
                     /note="ultra-conserved element locus uce-3170"
BASE COUNT          143 a           63 c           68 g          132 t
ORIGIN      
        1 atatatatat acatatatat attttaatac ttgtggacaa aatgatgtta caagttgttt
       61 gaaaacaaca aaatcaccaa tgtcttccat tttgagatgt gtatagttcc ataagcatta
      121 gtgctttgta gcaaactgta gtgccatgtt aggatcagtg catgagccta gtagtatttt
      181 tacaatttca gagtgacaaa tttattagta aacagtgatg ataatgtaat taacactaga
      241 aaggatacaa tagaaatgtc acaaacatgg tctaaacatg cagtatcctc cctttgacaa
      301 tggcaatgct atccttagaa atggaactca aatgagcttc atagaatcat agttgacttt
      361 ttgtgtccaa ctgcagtagt aagcttatgc aagcatccat aattct
//
LOCUS       KCOD01002739             797 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 304844pyr ultra-conserved element
            locus uce-3743, sequence.
ACCESSION   KCOD01002739
VERSION     KCOD01002739.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 797)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 797)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..797
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="304844pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>797
                     /note="ultra-conserved element locus uce-3743"
BASE COUNT          231 a          208 c          196 g          162 t
ORIGIN      
        1 agagggctct tggagaacag aagaacctgc tttaaggaca tgacacagag ctacaacaac
       61 aagagagaga gaagtagaaa gagacatact ggagaagctg accattgcga aatgctgaca
      121 ccggtctcct gtgaattcga tcggacacct accggaagag agaaaaccag aaagagagaa
      181 acaagatagc aaaatgacac cctgaggccc cttctgatcc cttccacagc tcctgtctgt
      241 ctgctttcag ccttcaccct tacctgcagc cctaagccct acccaaagct gacaccaagc
      301 gccagccctg actagaccac tctacatcca ccgctgtgcc cgggaggttt taagtagtgt
      361 ggtgcagtct tcaaacatac tttgcttagg atctggcatg tacaatcgca aaggcagttt
      421 ctccaaacat ctctgtccga agaatccatt tggacatctg gaggggaaaa ggggagaaat
      481 cacagaacat gtctggcaca gttcttgagg ctaaggtcag aaataaaaag tgcattgtga
      541 tgaatggaaa aaataaaggc tttacatgcg acaaggcacc tgcaacatca gtgttccagc
      601 tctggttagg cctgggtctt caagcaggca gccaaacccc tcctgctctg tcctgctctg
      661 cctgcctcct tccttctcac ctgctagaag catcagctgg caggaagact gagatgggct
      721 ggatgctacc gtggagctgc tctgtagact ggcaagaggc accacaaagc agtgagcagc
      781 tgctcaggcg acagcga
//
LOCUS       KCOD01002740             465 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 305049pyr ultra-conserved element
            locus uce-3600, sequence.
ACCESSION   KCOD01002740
VERSION     KCOD01002740.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 465)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 465)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..465
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="305049pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>465
                     /note="ultra-conserved element locus uce-3600"
BASE COUNT           98 a          112 c          110 g          145 t
ORIGIN      
        1 tcctttaata aaagacctgt gagctcccct tgacaccgga gctggaatcg ctggggcctg
       61 gggtgtcctg agtgccagct ctttgtggca atctggttcc acatccatcc tgccaacccg
      121 ctcctccggg ggttacttgt ttgaaaacaa gagcagcagc tcatctccca ttcactgttt
      181 ttctccatca tttgctttat taaatattga ttttctgttg cattattaaa ccttaagtcc
      241 tgagcataaa ttcagagttg atactttaat ctggctcttc tttttggcct ttagaactga
      301 tttttctggc cagtctctcc ggaggcaact ccagaagcaa aaacctgttg cggaggcttg
      361 gggagtcaga ggatgaagca aagggctctt cccaagggat ttttgtctgt ttggtgtagt
      421 ctttgccatg aaggtggcat ccatggggat cctggcctgc gatcc
//
LOCUS       KCOD01002741             546 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 305153pyr ultra-conserved element
            locus uce-5781, sequence.
ACCESSION   KCOD01002741
VERSION     KCOD01002741.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 546)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 546)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..546
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="305153pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>546
                     /note="ultra-conserved element locus uce-5781"
BASE COUNT          141 a          127 c          118 g          160 t
ORIGIN      
        1 gttcattgtg tacggattta tcagaatcat tgtgtgtgtt atgttcataa ttcatcctta
       61 aagcaggttt gtaaataata tttcaaacat attaactagg cagctctagc acgcatttct
      121 ttttatgcct ctcagaaaat agcttcttaa aacagtgaca ggctgttgtg agaaagaaag
      181 gggggaaatg taggtcaggt ctgtcacaca tgggctacca ttacatgaag tgataggctg
      241 tctttctgct ctggcctcag gataggagtc cctcagcctt ccattagaac cttcaataaa
      301 tgtatatcca ccctacatgt taatgggggg agtcaataat agtggcttgc ctgtggggaa
      361 aacactcggt cgcactctgc agtaacacac tgcagcccgg cattgacgtg gagccaccac
      421 gcggaatgtg tctgataaaa gcccactgtc tctgcagctt gttattgaat tccctgccat
      481 tgtacattgg cacaccatca gaccttgctc tcttttttta actcccctgc tgccgccgat
      541 gccaca
//
LOCUS       KCOD01002742             844 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 305260pyr ultra-conserved element
            locus uce-1210, sequence.
ACCESSION   KCOD01002742
VERSION     KCOD01002742.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 844)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 844)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..844
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="305260pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>844
                     /note="ultra-conserved element locus uce-1210"
BASE COUNT          265 a          155 c          162 g          262 t
ORIGIN      
        1 aggaattaaa cagtggtgtt gttgactaca atggaattca gcatatgcta tgtcacctct
       61 cctgaagtct tagcacacac aatcactaat gaattttaaa tttttgaacc ctcataattc
      121 caaatgtagg tcccctcttc tcctccccct gcaaatcccc aaatctaaag ctagtttaaa
      181 caattactaa atccaaggat ttcaataaaa tgtaatgttc acagaaaaat ctcataaatg
      241 tcaaaattgc taggggcaga atagggggga atatagtatt ttcttgatct gctgtagcaa
      301 tttatagatt tcaggatgtg gtttataaga atgctaaatg ttctggaatt acagctgtta
      361 ctgatcagtg attgagccag atttgtgtta ttgcaccatg ttcttgcttg tacctagaga
      421 gcagtaaagc ctcaatataa taaaaagcac ctgcatttta aatgaaattt caattgaaaa
      481 acttaacagc ccttcaaatt gcagaattta acgcagccca gtaaagctta aataacactt
      541 tgcctccaca ggctgagggt tttgcattca aggtgacttg attgtgtcgc atggtgaaat
      601 tatttacaat taaggaattt ctctggaggg ctgcagagta tttgctgttc cacaacacct
      661 atgcaggcat atggtcggtc tttttcagta ttcatggaag ctcctgaacc tttatgataa
      721 ttgaatcagt tagagtgctg agtggagcaa gcataaaacc tgttaaccta aaggtcagat
      781 ctgtgcattg tttatttatc agtaggtgaa agagctaaat cggcagcttc tgtcacagtc
      841 gaag
//
LOCUS       KCOD01002743             394 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 305365pyr ultra-conserved element
            locus uce-3654, sequence.
ACCESSION   KCOD01002743
VERSION     KCOD01002743.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 394)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 394)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..394
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="305365pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>394
                     /note="ultra-conserved element locus uce-3654"
BASE COUNT          100 a           89 c           83 g          122 t
ORIGIN      
        1 tccaacgcgg gcagcaccag ctgcccgtcc catcgagcag tttccatggg gtactcaaag
       61 ggttaatgga gcctatagtc atgtgtttgc tttctcctgt ttgaaatcaa acatctgatc
      121 tttatctgag gtgacaggtt taatgtcttc cttctctgac aaatttttac ccgaagagga
      181 atgcaaacac atacactggt gtggttttat aagtgctcat ctcagcaagc caatattgga
      241 agcttcgtct cctaataaac agcaaagcca tgagcttgtg ctgcttgctt ttatatccct
      301 tacatcatct aagagatttt acttcagggg tcaggtactt tgatagagct ttaggcaagg
      361 tgaagtatca ctgttcagca atgctgactt ccct
//
LOCUS       KCOD01002744             425 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 305473pyr ultra-conserved element
            locus uce-5182, sequence.
ACCESSION   KCOD01002744
VERSION     KCOD01002744.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 425)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 425)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..425
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="305473pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>425
                     /note="ultra-conserved element locus uce-5182"
BASE COUNT          106 a           97 c          103 g          119 t
ORIGIN      
        1 gaagcacctg aaggctgctc ttgactcatt ggatggactg gaactcaaga taggagagcc
       61 gtcagcttct gatttctaca ccttggaaag ggttaatgct gaggtgctct attgtattaa
      121 tgatggttgt ctcttcacag gccccttggg ctctttcagg ggcctctcaa aacaatgagt
      181 gcagtgaggc tgttctgtct aattactcca agacagggat gctaaagagg aattaatgac
      241 agttgacaag tgcaattaat aattatagca aagctgggag tcatgcagca ggcagatgac
      301 aataacaggg taactgtaca tgacagcttt catccgttcc ctgccccgcc tgctcctcct
      361 ttcttttacc ctttcatgtg agctgctgca tgagcaggcc gggccatttc cttagatttg
      421 tccaa
//
LOCUS       KCOD01002745             600 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 305585pyr ultra-conserved element
            locus uce-6565, sequence.
ACCESSION   KCOD01002745
VERSION     KCOD01002745.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 600)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 600)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..600
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="305585pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>600
                     /note="ultra-conserved element locus uce-6565"
BASE COUNT          192 a          117 c           97 g          194 t
ORIGIN      
        1 acttctctaa aacaaacata tagatcattt ttcatttcca acactatgac tgtaaatata
       61 taattacagt atccatacat ccaacatcaa atatgattta atactagagt agatgtaaag
      121 cacttatcta tcaaggtcgc acaagctcag ataaatcagg tgttaagcag gcacatctcc
      181 aaggaatctg ataattctct catctgcaat cctcagcata tcttattact tactgccaaa
      241 gaaatgactg attaattttg tcatctttgc tctgtgattt ttgttcagct gaaactggct
      301 gccctcttct gcaatgcctg atcagactta tttaagttga tgcctttgat cgtagacact
      361 gaggagcttg ctgacttagg ctttgactaa acattcctcc attgcaatat ttatgcacag
      421 aatcctaaat gataacggac agtcaatgaa aaacttgtag gatgtttcca ctcttttact
      481 gatgctcaaa acaggaggta tcagtcaaga tgcaacaaat tttgctttgg tgcaaactgt
      541 ctgaggtcag gaaataaaat ctgttggaaa actatgcagt tagaatgctt taaattcttt
//
LOCUS       KCOD01002746             542 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 305692pyr ultra-conserved element
            locus uce-6135, sequence.
ACCESSION   KCOD01002746
VERSION     KCOD01002746.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 542)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 542)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..542
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="305692pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>542
                     /note="ultra-conserved element locus uce-6135"
BASE COUNT          172 a          114 c          106 g          150 t
ORIGIN      
        1 acacacagct tcttgctaaa ctgaaggaag ctttgtaatc ttccatataa cgcctgtgct
       61 tttttacctc acagttgggc aagctattaa tttcttgagt aaaagggata ttacagatgc
      121 ttggcagaga gacatttcag cagcaggccg aatacttgcc aaaaaagtgt caaaatgtgg
      181 atgtgcctcc aataatttaa aaaatagaag gtgataagtt gaaaatgtca ggtaattggc
      241 agacagatag aaagttaaac tgtgtcctca gcgaagaaaa ttaaccagca gctgccagca
      301 gaggccccaa ggtcatctga atgtcagaac caagtaaggg ccaatcattc agaaggggtt
      361 cgctgctgat atttgccctc cctggtcatt ttcagatctc ccaggaactg ccctgaacta
      421 ctgccaacat gtgttcattt ctaaaaatta catagattgt gatttattac ccatcacgct
      481 acaaaaatcc attgtgaatt aaatcagccc tttgtttaaa ttgctcctct gcaatacgta
      541 tc
//
LOCUS       KCOD01002747             519 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 305795pyr ultra-conserved element
            locus uce-667, sequence.
ACCESSION   KCOD01002747
VERSION     KCOD01002747.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 519)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 519)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="305795pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>519
                     /note="ultra-conserved element locus uce-667"
BASE COUNT          174 a           89 c           91 g          165 t
ORIGIN      
        1 tcaaagcaaa cgagcagctg agctatttta aggtctgttc ttccagcagt ttcacatctt
       61 aaagaaaaat aagaattaca ccaaaccgct ctgttttcat tgcgttatgc agatgaaatg
      121 acaagttgtc atttaagaag ttaataaaca gtcaccattt tgcaggttat ccaaatgcta
      181 ctgaatagaa aaccttggat ccctaaatga tgtgtaatta aaattatttt aaaaatcctc
      241 cttgacaggc cagggcttag ccaaaatgta aatgacatta aagaagacaa tgaatttaat
      301 tttatttaat gtcccttttt gcagatcctc atttacatag catttttaac aaaagcgttg
      361 accttataaa tgctggcatt tgtacagctt ctgcagagtt ggatttaatc atgctttcgc
      421 aaagccataa gggaaaaagc tttaagttct ctggttggat atggagtagg aataaaaaca
      481 ttgggactgg tcaaatgttt atcctccttg cttctgaaa
//
LOCUS       KCOD01002748             464 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 305894pyr ultra-conserved element
            locus uce-3650, sequence.
ACCESSION   KCOD01002748
VERSION     KCOD01002748.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 464)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 464)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..464
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="305894pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>464
                     /note="ultra-conserved element locus uce-3650"
BASE COUNT          128 a           90 c           99 g          147 t
ORIGIN      
        1 cgcggaaaga aacttgcaca aaagaggtgt ttcaagcaga ataaattata gtgtgatgtt
       61 attaaaacac ttagttgtta agttgccaag aaaatccagt atattcacac ggactcgagg
      121 acctgtctcc atgcaaagta attaaattag atttatgggc tgcattacat cagtgtttga
      181 tagttcattt ttcctttctt catattttgt cctgctttat tagagcatgt gacagatggt
      241 aaaaatagtg tgaagtttct tggccctgtg ctaaatcccc cttcggtagt atatctctct
      301 tctgtcagtt ctccccagtg atgataaatt aacctctcct cttctatccc aagtgtggca
      361 gtaaagcact ctttgacaca gcactatcac tttatcttaa tctgtgctgt tccaggggcg
      421 gggtggggaa ggaagcgagg ggagatgatg caataccacg agtt
//
LOCUS       KCOD01002749             445 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 306002pyr ultra-conserved element
            locus uce-3163, sequence.
ACCESSION   KCOD01002749
VERSION     KCOD01002749.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 445)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 445)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..445
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="306002pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>445
                     /note="ultra-conserved element locus uce-3163"
BASE COUNT          185 a           83 c           71 g          106 t
ORIGIN      
        1 tccccctctc ctcccatttt aactacaatt ccaggctgtt aaaatgtcaa ctaccaagct
       61 aaaacggctt ccaagagtta attagaaaca aatgttatca gagatgcatg aaactacaaa
      121 ctactgctga agagacaaaa acagtgagat gcactaaaga cttgaaatca aaaggaaaca
      181 actcaaaatg atacatagaa caagtacagg aaccaccatc tgtcccttca aaacaagagc
      241 tgccatgaag acaatgcata gttacctgca tccatatctg caaagaaggg aacagccagt
      301 aaggaaaaga aggaaccaga aattcagtgt ctcagagttg aaaaaagttc atatggagaa
      361 cagataaaaa taatcaaaaa agtagttttt ttgatttctt aatttggaat tttctatgcc
      421 ataagaacaa aatattaaat atatt
//
LOCUS       KCOD01002750             609 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 306111pyr ultra-conserved element
            locus uce-4446, sequence.
ACCESSION   KCOD01002750
VERSION     KCOD01002750.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 609)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 609)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..609
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="306111pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>609
                     /note="ultra-conserved element locus uce-4446"
BASE COUNT          177 a           98 c           99 g          235 t
ORIGIN      
        1 catctaggcg gtaatcatta tattatgctg aactgcatgt tgaaattaca caatccattt
       61 aattttcaaa atatttggca ataagtgaaa tctcagcatg taattttctc aagtggtctt
      121 tcaaaaaaca aatcattttt atacgctagg gttttaactg catggcaaag taaggctagt
      181 ttgtgcatga gcaagttgaa atgctaacca aagaaacatg aaaaacgcac atttctctgc
      241 tttattggat gtgacagagt cacgcttttc attcaccatt gcttctcttt ttccactgtc
      301 tgtgatttgc ttgccaggag gagctactat tcttactcct actatctgta agtagaatat
      361 gggtgacgta ctattttacg tgttttaaag atgcagtatc cctttttaaa aaagaaaagt
      421 tttattgatt gttacttttc gttgttctca ggcttgaaaa ttgtatcatt gttcctttta
      481 ttcttttttt taaagggata ttgtatttct aactgtatat tgagacttta gttccttaac
      541 tatcttttta gtttattata atcataattt aatttgcatt atggttcaca gcaacacatc
      601 agactgagg
//
LOCUS       KCOD01002751             593 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 306218pyr ultra-conserved element
            locus uce-7474, sequence.
ACCESSION   KCOD01002751
VERSION     KCOD01002751.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 593)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="306218pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>593
                     /note="ultra-conserved element locus uce-7474"
BASE COUNT          164 a          155 c          106 g          168 t
ORIGIN      
        1 ctcaggccac ccccctcatt ccttcccaaa actacggttt gacattttcg cagtgattca
       61 actccattct taggcttgtc cttttcatcc agaacaacag aacagatcac caccttttgt
      121 cttgtgccct tcctttttaa gagtggcctt gcagttaaga tgcagttcaa accccacatg
      181 tacactgatg ggaactcact tgcttgccaa ctcccccccc ggcgggaggt ttgggatgct
      241 ctcagttgct aacgtacgca tcacgtggac taagtctggc actccttcac cctgcttctt
      301 tatgatctct gggaatcaga agtacttttt ttgtaagtgc agtccaaatt gaaacactca
      361 aaaaggcagc ttaacaaagc aacagaccgt actcaacatg gtaattgata actttggttc
      421 cataaggaaa aacctgtaac agatttgaca cagatttact gctgacacac tgacttggtt
      481 ttagaaatac acagctacct agtaacatct ttaatagctt tcctgctgat agaagatgta
      541 atatcttccc acaatatgcc caaggcacgg ggcagatact aacatcagct tta
//
LOCUS       KCOD01002752             668 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 306329pyr ultra-conserved element
            locus uce-3392, sequence.
ACCESSION   KCOD01002752
VERSION     KCOD01002752.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 668)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 668)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="306329pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>668
                     /note="ultra-conserved element locus uce-3392"
BASE COUNT          235 a          140 c          103 g          190 t
ORIGIN      
        1 tcttcaaata ctaatcaacc attacaaatg caattgatag aaaatttcaa agcagccact
       61 gaaagtagta taatttcggg agtatattag taatcgtcat ctgcaaaaaa ataagctcgt
      121 aacattaaaa attcagttca acccctctct ttccttggac cctggatcct aaaatgacat
      181 actacaagat aaaatagtaa tgctaatatt gatagtttgt ccattacagg tcagctaact
      241 gtccactgga acagttacaa agctgttagt ttcgatttca caaggccaat caataccgag
      301 gcatactgtt tcaattttgt ctgcattgat tataacaccc caaccttaca gcattcatct
      361 ttctgaaaga aggaagattt gatttactga agaaaaattg gagagagcat cacaaagatt
      421 ttaccggcaa gcctgtgaca cagggaaaaa gatgaatgtc tctaaggtag agacgcctct
      481 tgctcgaggg catccattag aacacattca accaatctga aacagagttt cttaagcaac
      541 cgaaacccaa gcctaaactc agtctcccaa actaatcaaa agcattcagg aaggttctct
      601 taaaaattcc taaaccttat tgcttctaaa ataatttatg tctacagttc tacctatgca
      661 tttttctg
//
LOCUS       KCOD01002753             391 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 306435pyr ultra-conserved element
            locus uce-2954, sequence.
ACCESSION   KCOD01002753
VERSION     KCOD01002753.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 391)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 391)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..391
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="306435pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>391
                     /note="ultra-conserved element locus uce-2954"
BASE COUNT          146 a           74 c           55 g          116 t
ORIGIN      
        1 caaaatagcc ctcaacataa cctttaaatt acgcttttaa cacttaaaaa ttccagttaa
       61 aataattttc cattttacag aataaacaaa gaccataact gttttcagtc tggttctaaa
      121 atgcagttct agtgccccag ggacttcttt catctagtgt aaatgctggc atatgatgtg
      181 attgttaaca tagctggcca ccagatgaag taaattatct aaactgccaa gattcctact
      241 ttcattccaa tttaaacatc aatttaacac aaaaactgaa gggtactatg aaagctttag
      301 tatgagccat ttcagatatg aaaaagaata gaaggatttc tcaagccacc aaaacaaaca
      361 aatatgcaat tcattgaacc tgagatgagt t
//
LOCUS       KCOD01002754             703 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 306543pyr ultra-conserved element
            locus uce-607, sequence.
ACCESSION   KCOD01002754
VERSION     KCOD01002754.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 703)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 703)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..703
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="306543pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>703
                     /note="ultra-conserved element locus uce-607"
BASE COUNT          204 a          122 c          153 g          224 t
ORIGIN      
        1 tttcagaaat aaaagcctgg agccagatgt ttgcaagctc tgtacttgtt tgtaatatgg
       61 aagcgtgtaa aaacttcagc tccttgcatg tggaatctag atcaattttt aatttacttg
      121 tacgcatgga tgactcattt gaaaaagaaa attgtggcat caaaaaaaag acatttcagg
      181 ctgcataggt tgctgcattt atctgtttct cgtgcactct ggagtggaaa taagtcacag
      241 tatcttaata atggtcttga ttttataaat gatttttccc cttgaaataa gcaatccatt
      301 cattttaata tgtagaattg gtttgctagc agggcgacag tttaaaaaga cttccaactg
      361 tgacacaagt gcaaccatat tgcttcctat tactcgctaa ggtagttgtt tagaagagag
      421 aatgttctcc ctggaaatgt ttaaagtgct gtaattttat ttaggataat gaggatttat
      481 aacagtttta ccatatgaaa acctgccttt agacagagtg aaataggcgg ttgtggttac
      541 ggagcgtgag acgcagggag gtgtctgtgg ctgcccgggc agcgaatccg tcactgggcc
      601 cagaacattc ctcgcagccg cgtgggataa ttcatcacca gcatgtatgg atttctctgc
      661 tttaatcgct ctagacgtta attaaaatcc tgttttatag aat
//
LOCUS       KCOD01002755             525 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 306649pyr ultra-conserved element
            locus uce-3042, sequence.
ACCESSION   KCOD01002755
VERSION     KCOD01002755.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 525)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 525)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..525
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="306649pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>525
                     /note="ultra-conserved element locus uce-3042"
BASE COUNT          206 a           82 c          101 g          136 t
ORIGIN      
        1 ttagcccagg aaaaatagtg aaccaaaata ctaattttgt atcctcatgc taccaattag
       61 aaacattatt taatgcaggt atcttagctg ccagtctgta tataaaacag aacaaaacca
      121 tttttgatag ttatttaagg gcatcctaaa tacactcaag aatagtacat tttaattttc
      181 aataatgcca gcagactcaa gcattcagat tttagcataa ccagcaggaa aactgtttga
      241 tgttttaatt atgtcccaga aaatgctgaa tgtgttataa aagaaatctg aagaggggag
      301 ggggaaggtt tttattactg ctcaagagga aggacgtttt acaacatagc attaaaaatg
      361 taaaatggaa taaaaaagaa ctcagatagt caaaactttg tctgcaacaa agtaggccag
      421 agaagcacaa taatatgtct gttagaagca gtcagcagtg agaagtgaag gagaacattt
      481 acacagacac agggctgaag gaaaggaaaa gcctttaacc ccaaa
//
LOCUS       KCOD01002756             787 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 306757pyr ultra-conserved element
            locus uce-2378, sequence.
ACCESSION   KCOD01002756
VERSION     KCOD01002756.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 787)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 787)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..787
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="306757pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>787
                     /note="ultra-conserved element locus uce-2378"
BASE COUNT          229 a          193 c          157 g          208 t
ORIGIN      
        1 aagcacgagg gcgcagtaaa tcccgagtcc tgctattact actgtgctct gtgcgattac
       61 tccaccaagg tcaagctgaa cctggtacaa catgtccgct ccgtgaagca ccagcagaca
      121 gagggcctcc gcaagctcca gctacaccag caagggctgg caccagagga ggacaacctc
      181 agcgagatat tttttgtcaa agattgccca ccaaatgagc ttggtgagta gcactccctg
      241 agccctcccc caaagactct ccaaacccag aacccgtccc ccagtgtaaa acacggcagc
      301 tcttaatctc tcagaaatga acatgttgtt cccattaaag ccttcttttt atatcagtac
      361 catacgcagt cctgcatgcg gtgacatctt tagcaggcat gcaggaggtt atgaaactct
      421 acctagggag gatctcacag tgaaattttt ccccccagag tgagctttaa tttcctttct
      481 catgaccaaa gcaatttggc tttcatttaa aagtttcttt gctgccagca gctaataagt
      541 gtaacaggac tgtaaaacat tctgagacaa aaaaagatta atagttttat ttgagagaga
      601 ccagtaattt aaaacataag acctagtcag ggtccattat acaataattc caatgttaat
      661 gctactttgc aaaatgagcg cttaacttgt ttttgctttg gttgacctgg cgcagggaaa
      721 cagctaacac gttttgaatg gcattccaaa actgaattaa tctctgttcc ctaaagtgtc
      781 ctgttta
//
LOCUS       KCOD01002757             296 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 306862pyr ultra-conserved element
            locus uce-7278, sequence.
ACCESSION   KCOD01002757
VERSION     KCOD01002757.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 296)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 296)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..296
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="306862pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>296
                     /note="ultra-conserved element locus uce-7278"
BASE COUNT          116 a           70 c           52 g           58 t
ORIGIN      
        1 ggcagactta ctggttatca ttgctccagt tacagaaccc agaaatccaa tgctgaccac
       61 aatgacagag atcagcctcc cctgcctatg cctctgcagc atcacaaaca ttaatactcc
      121 cacagcacca tggacaaaga gagaggagaa gagagcccag aggaaaaccc agtaccacat
      181 ctctgaaaga aagcagtcaa ataaagggtt aaagacaaga actttataac aaactttaaa
      241 atattgcaaa caattaagag aaaagcattt ccatcttaaa agtgatgctc aagact
//
LOCUS       KCOD01002758             609 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 306970pyr ultra-conserved element
            locus uce-4651, sequence.
ACCESSION   KCOD01002758
VERSION     KCOD01002758.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 609)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 609)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..609
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="306970pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>609
                     /note="ultra-conserved element locus uce-4651"
BASE COUNT          155 a          122 c          160 g          172 t
ORIGIN      
        1 tgaatcttgg cctggggaag gtcacgccgt ggttggactg gtgatggaca cagcagcaaa
       61 acttattggg ggagtggcag cagctgttgg gaacacccgg gagggagtgc cacaagtgtg
      121 atgagaacgt agataacgaa gggaaaaggg aaaggaaatg tgaagtggcc ctttaaatat
      181 gagcctccag agcccagagc ccaactagct ttccctcaag tattcaaatg agattgcagc
      241 atcagattgg tatgcattag gctggtctca atgaaaatta acatgtaatt gcttcaaatg
      301 aagtaagtga ggaggtaatc tgttcttaaa ttggattcgc aggattttgt ggtaccataa
      361 tgcagctgtg aaatgaaata tattttaagg atgatgtcct caaggggaga gggaaggact
      421 gggaagggtc ctttccctca ctccttttgt ttctggtctc attagtgcta ttttataaat
      481 gaggagaggg ctttggtgcc actggagaag atcctattgc ttttggctcc atcatgtttc
      541 cttcctcgac acccctcctg tccctccctt cctcttcctg tggttcttca cttctatgtc
      601 aatgcctct
//
LOCUS       KCOD01002759             466 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 307076pyr ultra-conserved element
            locus uce-7109, sequence.
ACCESSION   KCOD01002759
VERSION     KCOD01002759.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 466)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 466)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..466
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="307076pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>466
                     /note="ultra-conserved element locus uce-7109"
BASE COUNT          153 a           84 c           93 g          136 t
ORIGIN      
        1 aaaaaaagaa aatgtacttc atgaaactat tgtatatgaa gcacttatta gccgtaatta
       61 aatggacaat atgaatttac tacgtcttta ggactctggc ttgttctggt ttagagcaag
      121 atgattaatg caaatacata ttacttgaga taaccattta gcagctaatt tagccaaatt
      181 tattacagca gttagaggtt tttcatttta gcagacggag acaaggacat gacaaaagca
      241 ggcggtgaat gtgaaggcac actgccctct agtgcacaaa gctttgtggg aatagtgagg
      301 aatgcaggga ggacagcaac aaccgtgccc agatttttat gggttttata aacccatgct
      361 gctcccttcc actgaaagat ttgcatttca ttcccttctc ctgacactga agaatcagat
      421 acaaaacaaa tccgtttcat tggcaatatt ttggctgaag tattac
//
LOCUS       KCOD01002760             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 307187pyr ultra-conserved element
            locus uce-7542, sequence.
ACCESSION   KCOD01002760
VERSION     KCOD01002760.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="307187pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-7542"
BASE COUNT          218 a          109 c          129 g          246 t
ORIGIN      
        1 tcctttcaca aatcttcctt tgaagaactc aaactattct attgctaata gaaatgacga
       61 aacagatacg ggacttgctt atactttcaa tctccactgt agtgcatgtt tcaattaaaa
      121 gtaaaattac cacattcttt agtttgtgta attttttgat agaatggtac atttatatgt
      181 taattttgct aagatcaact ttatttatct acaggaagct attccaagat tgttgtacgt
      241 tttcttcact tctgaaatgt tatcacattt aattgcctga tcttatttgg gttgcaatca
      301 tagtcattaa ttagcaggaa ggtgagggac agcatcatat ctaactatct gttatggctg
      361 ctttaatgag aaaaatacct gccatcattt taaaggcatc ctgtatactt cacaaataca
      421 gcttgctgta gcattctcat ttagactgtg aacatcaaag gaaattgatg tcaggtgtga
      481 acagaagctg ttgaatatat ctgttgagga agctgagtgg tatgtctgga tgggagagat
      541 gaagggcagc ttaaaacatt aacaaaacta caggtaatta gtgtaaactt tcaagggtaa
      601 ggtatgcttg aggaataaaa atgctgttta tagctattcc ctgtagtgcc actattgcta
      661 agggtctgtc aatgttttca tttataaagc tctattttta ta
//
LOCUS       KCOD01002761             366 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 307297pyr ultra-conserved element
            locus uce-2404, sequence.
ACCESSION   KCOD01002761
VERSION     KCOD01002761.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 366)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 366)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..366
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="307297pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>366
                     /note="ultra-conserved element locus uce-2404"
BASE COUNT           81 a           84 c          104 g           97 t
ORIGIN      
        1 tcccactaaa accagtgccg ggtgctggga gcataatggg aagcggcgcg ggtgcactcg
       61 cggggagggc tctgggaccc ttcaattgct ggttttatta atgtccagaa gcgtaaatca
      121 cagtcccata ttttgtcatt ccagtcattt tagtcactaa aggattactt caagtgactg
      181 aactcggctg ttatctgttt gagtttttgc agccaggtca tctcagggga ctgggaacaa
      241 gcttgctgcc cccttaactg tgtcgagcgg ctggctcgag cccgaccact ttttgtgatt
      301 gatgtacgtt ccgcggcgct ggggctgctc ctggcagcga ggtggggaaa ataagtaaat
      361 aaataa
//
LOCUS       KCOD01002762             711 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 307408pyr ultra-conserved element
            locus uce-1053, sequence.
ACCESSION   KCOD01002762
VERSION     KCOD01002762.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 711)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 711)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..711
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="307408pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>711
                     /note="ultra-conserved element locus uce-1053"
BASE COUNT          238 a          129 c          112 g          232 t
ORIGIN      
        1 aatactttat aataaagcat tttcttgttt cagaaatacc tttgctaaaa tggcttaaca
       61 caactaaaag tgttttagat caaagaaaat ttaagtaaaa tttccctctg cttcttcaca
      121 ggaggttgtc tggtgcctat attcctgttc tttcacatta gagctgtaag tctcctcttt
      181 caggtcacgt cttacacata aaagtgctaa actaatgccg cttaatgaca aattaatgtc
      241 catgaataaa aaatacacct ctaatagcat agagtaattt gccattacaa tatcatcatt
      301 ggacatgccc ctggtttaat acgatgtatt taattcataa cttaatgagt gatatataaa
      361 aagagagaga tgaaccctgc aattacattt atgtgagtct gtcaccttat ttgtaaaacc
      421 ttagagtcat ttacattcaa attagaacaa atgagtgatt tcacaaagtg cagtgataaa
      481 tgaccattgc tgcacaagac agaactgtat ttcctgtgaa aacattaaca gtttcctatt
      541 atttgttaaa aattacaatg catattgccc agtgttgtgt gaataatgac ttttttactg
      601 attaggtcag aagactaata cagaggaaaa ataaataatt tttcttttca aatttctctg
      661 ctcaagctgt tacggactca cactgccacc tgctgcccag gcccggggag g
//
LOCUS       KCOD01002763             821 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 307519pyr ultra-conserved element
            locus uce-422, sequence.
ACCESSION   KCOD01002763
VERSION     KCOD01002763.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 821)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 821)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..821
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="307519pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>821
                     /note="ultra-conserved element locus uce-422"
BASE COUNT          245 a          200 c          159 g          217 t
ORIGIN      
        1 aagctctggc atgcaccgcc gaacaaaagg gaacaagtgg tctttactcg gagagcagct
       61 tcctattaag actcactccg tcgtacatta tgcctttcat ccccactcaa ccacaaaatg
      121 attttgctgt aggaaataca atggcagaaa aagatttaca ttgaaagaat ctttaataat
      181 aaactgttgc agatctgcct acttccccat gatttataat acaataaaca tcggattcta
      241 ttaagtctca tgcactgaag acacgcactg aaaacccgag tatgaaagcc ctcaattctt
      301 cccttctcca ggcccataat agtgaaacga gcatggataa atgtgctaag agtatctctt
      361 tgcatctttt atagcttgtg tgtatcaatc tgtaaagctt attaagaaag tcattgctat
      421 gcaaagcagc acccaatctc tttctcttgc ttttcaacag cgcgcagtgt ttagccaata
      481 gggccgggcc ccggcccctc attccgcatt cataacatgc aacatttgca caatgtgtat
      541 ctcaaaggct gctgaataga aagccttaat actcatgtaa acaactgcaa accaattact
      601 taatgaatca ggcccacaca taatgaggtg ccagacaaag agctataaat gcatttttgc
      661 gcccgagcct ccgctttaaa gtaaaatccc tcagctgtag tttgggctta actggcacat
      721 gataattatt gtctggggga catcagagga gccacggttt ttattccggt ccggcggggt
      781 ccgcgccgag gtcactcatc agctcagtga caaaacgcgg c
//
LOCUS       KCOD01002764             680 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 307629pyr ultra-conserved element
            locus uce-212, sequence.
ACCESSION   KCOD01002764
VERSION     KCOD01002764.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 680)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 680)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..680
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="307629pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>680
                     /note="ultra-conserved element locus uce-212"
BASE COUNT          252 a          118 c          109 g          201 t
ORIGIN      
        1 aacatgcaaa cccccaaact ttcaagtatt cataaggtat aaaaaatggt tttaaaacaa
       61 atgatttgac agctgcaaat gcaggataac acctagttac attatagaaa cagtgtggat
      121 aattactttt ttcagaagga aagactccat ggaccacagt cctgtctgaa tttccctgca
      181 gttcagataa tgtgcagtaa tacaaatcct gttgtcacct caaccttttt atcatctata
      241 catcagcaag aatgatgaga gacgtcccat gattctaaca gtcttccttt gaaggatcca
      301 catgttaatt actgcactaa ttatagtttt tgaataacca aatgaagtaa gcagtctatg
      361 ggaggtacag gcataaaact aagactgaga aaatactagt tactgaagtc atcagtgtaa
      421 actgacacat tgaacatgct taaaagaagt agaagtagat tttaaaagac aagcatattc
      481 aataattacg gttccataca ggaaaaagaa atgttatttc ttaatggcaa gtgcatttaa
      541 actgttatct aaagatctga aggtaagcct gcttaattca ctgcttcttc ttttgttatt
      601 aggaaaacat aattgttcca aataattagc actagagtac atcacaagct gacaacaaaa
      661 ttatagaaat cttcatattc
//
LOCUS       KCOD01002765             720 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 307740pyr ultra-conserved element
            locus uce-3900, sequence.
ACCESSION   KCOD01002765
VERSION     KCOD01002765.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 720)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 720)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..720
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="307740pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>720
                     /note="ultra-conserved element locus uce-3900"
BASE COUNT          178 a          157 c          121 g          264 t
ORIGIN      
        1 tgcatgtact gttgcatgtg tgtattattg taaatgctag ggatttcttt tctttggctg
       61 ctcttcattt tttagcaagg caatataaat ctcttttgaa atgaattgca gtagttattg
      121 ccatgcgtga agtgactttt tatgtttagc cacttgaatg tggctaaatg agatttttct
      181 ctattatcat catttaaaca ttttactctg cctttctgga gaatgacagg taacaggttg
      241 tagttttgac tgttttgccc actacaggtg accaactgag tgccatactg aattccattc
      301 agtcaaggcc aaatctccca gctccttcca tctttgatca agctgcaaaa cctccctctt
      361 cccttgtcca cagtccattt gtgttcggac agcccctttc cttccagcag cctcagccac
      421 agcttcagag taagcagcct tacctgcctc atcagtccat ttctgcagct ttgacattgc
      481 tgttctcagt tgcttaccag ctactaatca tcccacagtg cacctttctg aagtttttca
      541 tgattcagaa gcatctgagg taatgctccc caagaagtat acttgtttga ctaattttta
      601 tattgacaat attttggttt tgtatgtgtt cttcactgta gtgcatttcc aatattctat
      661 gcaattctgg tgtaattaag gtaaatattt catatatgat aattcttcta acatcaaaaa
//
LOCUS       KCOD01002766             449 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 307849pyr ultra-conserved element
            locus uce-2690, sequence.
ACCESSION   KCOD01002766
VERSION     KCOD01002766.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 449)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 449)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..449
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="307849pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>449
                     /note="ultra-conserved element locus uce-2690"
BASE COUNT          150 a           81 c           96 g          122 t
ORIGIN      
        1 aatatgagga gtgattccca aatcgaagac tggcaaatag ttacccagct gctacagaaa
       61 tagcaagata gattttaaag aaaagaaatt aaatgaaatg gatattagct ggaaacatct
      121 gtgttcacca cagagcaaaa tgcatattca gcagccagtt tattggctct ttagaggatg
      181 tgaatggtgc attgtaaata atgacacgcc tgtaataaat tcccagtaaa aaagagaggg
      241 ggactgagcc tgttcctccc acaattcaca tttctgggtc cctgctgtga gtgatgattc
      301 acagcagtca caaattcctg ttttcaaaat gctattgtat actccagggc tttcattaag
      361 ttttacacta gcaagggaaa tttaaaactt gagagagaga gagagaggct ctgtggtgac
      421 attcatttaa cactcactgt actgcactg
//
LOCUS       KCOD01002767             454 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 307949pyr ultra-conserved element
            locus uce-3273, sequence.
ACCESSION   KCOD01002767
VERSION     KCOD01002767.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 454)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 454)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="307949pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>454
                     /note="ultra-conserved element locus uce-3273"
BASE COUNT          127 a           76 c           82 g          169 t
ORIGIN      
        1 ctcccaaatg gcaaagattt ttagtgggta atggttagga tctttgttgg tttcctgttt
       61 gtttttacct ttacaaaaag atattaagga acctattttt taggtcagga atataacttt
      121 ctgaagatgg agcctggaga ggtgaactcc cttggggaac catatgactt tgacagcatt
      181 atgcactatg ccaggaacac cttctcaagg ttggagtctc aggttatacc ttttgacttt
      241 taattctatt cctgtctgtg aatgctaaga actatgcttt gaagtatttt gaaatccctt
      301 aaaatgtccc ttgacttaca gcagtcaaag cacagcttgt ttattttaag tgaaagtaat
      361 ttaattatat tttaaaatgc atttattttc tgttcagttt caaaacagcc ctttgatctt
      421 gcttcagttc tttagatttt cagacaagat aatc
//
LOCUS       KCOD01002768             596 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 308059pyr ultra-conserved element
            locus uce-2407, sequence.
ACCESSION   KCOD01002768
VERSION     KCOD01002768.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 596)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 596)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..596
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="308059pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>596
                     /note="ultra-conserved element locus uce-2407"
BASE COUNT          161 a          127 c          140 g          168 t
ORIGIN      
        1 agcagtttat ttcacaccag ttacaacttt tatgctggaa ctgtatatta atcacaggat
       61 taatggaagc tgaattcccc aaacatgttt tcctgagagc catttaagct gaaagaatac
      121 atatgtcctc atcctgcagg ggtgcactgt ggttttcagg cttttggtaa gtgaatcctg
      181 ttacctttga caactgtaag atgcaggtgg tctttctaga tgactccttg agcatgccca
      241 gtgtggtaag tgaacaagaa acatacctta tgggtgccat tgggaggagg cggttctcca
      301 gccatctctc cagcatgtct gcacctgagg ctgaggtggg catgttaccc agccaaaggt
      361 aacaacatgg gcttttcacc tttcccatta acaagagcat aaatggcact cagagatatg
      421 ggatagtgga attggtgcca acatagtgat gctaaattta ttcatcctgg caagggtgca
      481 gggttggaga tctgtgttgc gtactgtcat ccacagaagc agtttcagaa acactcagcg
      541 ttatctgcta ctactgaata gcaaggggta ttcattaaac cccataccca gtctgt
//
LOCUS       KCOD01002769             341 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 308159pyr ultra-conserved element
            locus uce-1402, sequence.
ACCESSION   KCOD01002769
VERSION     KCOD01002769.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 341)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 341)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..341
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="308159pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>341
                     /note="ultra-conserved element locus uce-1402"
BASE COUNT           72 a           62 c          104 g          103 t
ORIGIN      
        1 ttgttgtgca gttgactgaa gaaatgttaa catcccgctc taaatctctc agtggagtct
       61 ctgttccctt ctctgatata acagatgggt tattgcttgt tataattatt aacattgtgg
      121 tgtgggccag ggctagggtg ggagccattc tggggggcga gggcggggtg ctgcttaagg
      181 ttggaatgtt aactccagtg gtgactgact gtttccgtaa tagcaggttg ttgtggctgc
      241 acgctctagt acttgaggct gtgtacttca ctgagcttgt ggtagagcct agggcgaact
      301 gctgtcccaa gagaatgctg ggatggatag aactagccaa t
//
LOCUS       KCOD01002770             894 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 308265pyr ultra-conserved element
            locus uce-881, sequence.
ACCESSION   KCOD01002770
VERSION     KCOD01002770.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 894)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 894)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..894
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="308265pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>894
                     /note="ultra-conserved element locus uce-881"
BASE COUNT          275 a          180 c          171 g          268 t
ORIGIN      
        1 gagtctgagt ttctgttgag caagcagaat ttaaatggcc ctgcccaggc tgcagactag
       61 atacaaatac attcagtgtg agaaaaggta gagttttttt gctgttgccc cgtgctggtt
      121 ttggaatatt tggagttacc cacacttaca gatctcatca taccaaaatt ataaaatgca
      181 aaattatttt actattttct atgtcaaaat acaacatatt aaaaacaagt cacagacaat
      241 tcttttcctg taaaggttag ggattctcaa tgtacattca gaaccataca cacaagtgca
      301 aataagtcaa ctaccacagc tatttaatca ggagcgtttg ttgatttgag cagagcccct
      361 atgctgtgaa atgaaaaaag aaaaccaaat tttcttgagc aatcttgctg ttcctgcttc
      421 aggtgctagg ccatttcact aaagcagctc agacgagaat gtcattagtt cctaagcccc
      481 aggtgaattt gccactgttc cacatgatta agccagataa ttgtgtgttg atagcgaatg
      541 tggttggtga aatacaattt ctaggacctt cctaaacaaa cacaatgtag aagtgagtca
      601 aagtgctgtc atttcagtcc tttgtcacag gctttgcact tgcagacatc tctagtgagg
      661 actggcgaat aattctgtgg catgtcactg tgctcttaaa ggtgacctgg ctccgaaagt
      721 ggatcataca tcttttggca aaggcctgga taatgtactc atcagcagca cagacttcta
      781 acattagccc cttttaaact atgcatgttg gagattgctt tgtcttcaaa taactttaca
      841 attccagaca gtactttcag aagtcattaa aatgccacac taatgtgcaa ttac
//
LOCUS       KCOD01002771             763 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 308378pyr ultra-conserved element
            locus uce-2422, sequence.
ACCESSION   KCOD01002771
VERSION     KCOD01002771.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 763)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 763)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..763
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="308378pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>763
                     /note="ultra-conserved element locus uce-2422"
BASE COUNT          224 a          185 c          177 g          177 t
ORIGIN      
        1 ggatcccagt aactcaggga accatttggc tttgcggact gagaagggaa tcaaatagtt
       61 gaacccttag taaacatgcg aacgcaactg gttgtctttg atgatttgtt agcttggacc
      121 tgagccagga gacctgggga ttgcagtcca agttcctaga gctccacggc tgacatgcag
      181 agcagcagat cacagttggg atgcgtgaaa cttgttatca gttggagagg cagccagcag
      241 gtggaatcct cctatatctc ctgcccattt ccaatctggc aatcttggct gaacctgaat
      301 cacctactta ataaaaattc catattcagt ccatagaaat gcttccagca cagttagatc
      361 aatttcctct aagtagcaat aaatgtgttt tcctttaaaa ggccaacaca agcacattat
      421 cacagcctat aatccccatt ctctgtatta gctcaaagta catcccagag gccaagggtc
      481 gcagctaaag actaatcagt ctcattagcc tgtctaattt atcttaacta gggggacaca
      541 aacacactaa aactgttagg gagacttttt gatcaggata tgggagtcat tcatcagggt
      601 cctgcagctt ccgagagaaa cgacccgggg acaaagccat tctccaagga agctctgcag
      661 caagacacac ccaagcaggc aggacggggc agaaacgctc ccgggggctc ctgctgtcct
      721 accaggcaac atcccagcag gataggagag gtatggaaaa gca
//
LOCUS       KCOD01002772             527 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 308478pyr ultra-conserved element
            locus uce-2668, sequence.
ACCESSION   KCOD01002772
VERSION     KCOD01002772.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 527)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 527)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..527
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="308478pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>527
                     /note="ultra-conserved element locus uce-2668"
BASE COUNT          123 a          140 c          109 g          155 t
ORIGIN      
        1 gatgctgaga ctcctcagcc ctgcattctc ctcttggttc cagtgccctc ctccctctgt
       61 cccgcctatc ctggggtgag caggcttccc cctcctccca ggctccttct ccatcttccc
      121 ctccctgcgc tccgcatgag cctcagctct gtttgtgccc acattagcat ttctgctgac
      181 tgcaaggatc ggtttaattt catgggtgtc atttccttca agaaatctct ctctgagcag
      241 cagcccgacg aatgcctgat aaaacatatt ttcctacggt aatgatttta tggacccata
      301 agtcatgaat ttattatgat ctcagcccct gctgctgatt gctgtaaaat gcaaagtaat
      361 taacagcgag cggtagcagc tattcccacc tggtagcgtg ttcttgggta cgctgatggc
      421 tttgattaaa gtaatggcta aagtgtacag cccggctgta aaatattagc atgattaatg
      481 cagtatccta aataagaaac aaaactaatg ggcatggttt aaggaat
//
LOCUS       KCOD01002773             301 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 308584pyr ultra-conserved element
            locus uce-4131, sequence.
ACCESSION   KCOD01002773
VERSION     KCOD01002773.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 301)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 301)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..301
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="308584pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>301
                     /note="ultra-conserved element locus uce-4131"
BASE COUNT           85 a           51 c           56 g          109 t
ORIGIN      
        1 tgaagagtat tatataggaa tgggtttatt atttcctgtg aaacacactc tctttttata
       61 ggctggttca tttagactct gctgtgaaat accttaaaag gtaacacagt attttgacta
      121 cagcagtaat ttattacacc agttaatctt gtaaaattgc cctctggatg taataatttg
      181 ttattctttt attaggcctt cttctgcata ccatgtttat cataaagatg tcaccagtgt
      241 gatgcctagc aaccagtaca atgttccgga ggtgtttgca tacattttcc tgagggagag
      301 a
//
LOCUS       KCOD01002774             529 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 308691pyr ultra-conserved element
            locus uce-5227, sequence.
ACCESSION   KCOD01002774
VERSION     KCOD01002774.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 529)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 529)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="308691pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>529
                     /note="ultra-conserved element locus uce-5227"
BASE COUNT          193 a           89 c           81 g          166 t
ORIGIN      
        1 tgaagcagtt caggactgac ttttaaagct acttgacaca gagcagaata gcaaagaggt
       61 ttaaaatatt ttaataaacg cctttatgtt acaggatttt gtattcctga gatgtaaata
      121 aaactctgta aagctcagag aataactaca taagccattt tacaaggagg atatactttt
      181 ccttcttttc tatgaatgta taaagctcgc cgtcaagctc ttactaaatc tattgatctg
      241 tgaaacacag tgcactccag ggaggcaatt cacttgacgt tatatatcaa atgatgagat
      301 gaataatgat cataccattt ggtaattaaa catcttacaa accttttaac tgactgaaca
      361 tcagaaaggt caaatgagat taaacctcat atttgcaaaa caaaagttac atttaacagt
      421 aattattcta ttacatggca aaaccaaatt attgtgttag acagtttgaa tccataagag
      481 aaatagttct ttctaatctt catttttact caccagtata gcgcaaaga
//
LOCUS       KCOD01002775             580 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 308799pyr ultra-conserved element
            locus uce-6588, sequence.
ACCESSION   KCOD01002775
VERSION     KCOD01002775.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 580)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 580)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..580
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="308799pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>580
                     /note="ultra-conserved element locus uce-6588"
BASE COUNT          189 a           77 c          124 g          190 t
ORIGIN      
        1 ttgctgtgag atactgacat tttttgaacc gagacatcaa aatttgtgag gtgtttgcat
       61 gtggccatta cagtcatcgg ctaggttgga catttacaaa taaacaattg ttattaaagg
      121 atctgtgtgt ctgtggacta tgaatgatgc tggctttcag gagaaagatt gattattgta
      181 tactgacttt ttgtaatctt gtacaattgt aacgcatcac aagtggggaa ggaatattct
      241 ggtttatttc ctagactgtt ataaatgtgt taggaaggca taaatgtaac aagtatcaca
      301 ctgtatataa aggtatcaat gtttgtcctg tataagaaat attaaattac aacagcagtt
      361 tcatttaaac ttctgggtta tgtttgagcc tgaaatttta atgaagtgca atactgagtg
      421 tgcctcatat cttgcagctg taaacataat ggaatgtaca tgtcaataaa gccactgtac
      481 atttttatac agtgaaagtc taacaatgtg taagcctcca gaagaaggga gtttcagcag
      541 aaaaagtaga aaaggtaaac tggtggttat agaagtactt
//
LOCUS       KCOD01002776             749 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 308910pyr ultra-conserved element
            locus uce-7216, sequence.
ACCESSION   KCOD01002776
VERSION     KCOD01002776.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 749)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 749)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..749
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="308910pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>749
                     /note="ultra-conserved element locus uce-7216"
BASE COUNT          228 a          156 c          156 g          209 t
ORIGIN      
        1 tcaatccaca ctcagtgatc tcattgagtc attacggcat aattacaatt tgagtgtgag
       61 tttgtagaaa agtatctatt tttagcggaa gaaacctaca gtccctgaaa ggaggagaaa
      121 gaaaaagaaa atctgtaacc agcaaatcaa tgctatttga tattacgaga caccctgtag
      181 atttacagtg cttgcactca gccaaaaacc acactgaaaa gaatgcctac taggggttaa
      241 attcatatgc ctgcactgca gcctatttct gtcaacactc agctcaggaa ataaacattt
      301 atgctttctg aaatgaaagt gtatttttga agactagccg tcagatattt tttgcccttc
      361 acactttcaa atgcttagcc ttttttgtaa gttgactgca aagtgcatca gtttgctagg
      421 caaaaagcct tgacaagtgc ccatggcatc attgtcaagc acacgagcgt ctagtagaag
      481 atggcaggag ggttggcaca aaacatgctt ccttcaagct tcttacctca ggggtacctg
      541 actcttgaga agcctttcaa tccttccaaa tgacgttatt gcagactgtc atctggttta
      601 tttggagtgt gctgtatcgc agataaacat gctatttaac tgcaggtcaa ggtacgagtc
      661 atcctgccag caaacgcctg agatacatca gatggcactg acttgggaga tggagaggga
      721 tcaaacttgt caccaatatg gtacatgct
//
LOCUS       KCOD01002777             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 309019pyr ultra-conserved element
            locus uce-6898, sequence.
ACCESSION   KCOD01002777
VERSION     KCOD01002777.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="309019pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-6898"
BASE COUNT          196 a          123 c          106 g          209 t
ORIGIN      
        1 ccaatagaac tgttacctag caataaaaaa tttcattcat tttaatgttt cctgtctcaa
       61 acataacagg tcagttgaca ggaatttgtg tctgaccaaa cccagaagcg tatttaaatg
      121 gtctcttcct tcataaggag acataagtgt gacttacctc tgcaattccg cttgcttccc
      181 ctgtatgttt tgtacattcc tgcatctttc agcatggcac actgtgaaga cctagtaagc
      241 gagttaaagt cagatgacgc taacgaatcc cagcgcaaat gactgaatca ataggaaacc
      301 agccactgct gtttaagtgt atcgataaat gtacctttat tttctcttga atggataagt
      361 gtcgcagtta agagtcctat ggatctctta attgaaagtt aattttaaat caataaagag
      421 agtcatttaa atattgatca gtcctttcta cacgaattgt tagctgattt ttttgaaaca
      481 actttgttta aatgcaatca atagcccaca atcagtgcgt tccataaaaa attgacagat
      541 gttcccaaaa tgcctgctag gcataatctt atctgtttac atatgtagca tagatatttc
      601 agtccttttc agatgtcaga aatgtgattt cctt
//
LOCUS       KCOD01002778             631 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 309125pyr ultra-conserved element
            locus uce-3235, sequence.
ACCESSION   KCOD01002778
VERSION     KCOD01002778.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 631)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 631)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..631
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="309125pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>631
                     /note="ultra-conserved element locus uce-3235"
BASE COUNT          218 a          110 c          106 g          197 t
ORIGIN      
        1 cccagaatat ccctcttcta aacctcttga taatcattcc tacaaatgta gataaaacta
       61 aaaaaatctg ttgcatatgc tttattaagt gaatcatgac ttaaagcaga acccagtgca
      121 agctttctgg attacactgg attacaaaag ttgtaaacaa tgctactggt tttattatgg
      181 cttgatgcag acatgcttca gtatattaca gactctcaat tttaaaatgt aaatggtaca
      241 ggatattgat aaaccaatta gcactgatgc aaagcaaatt cctcttttat ctcaattaca
      301 acatgacaac ttaataggtc aagatagtct aacatctgag acaagggcaa ttcaataaaa
      361 caactgcatc ttgatatggt aattaagagg aaatgtgaat ccattacatt gtcttgtgta
      421 tgtgtgcgta tgtaggtgtt atttatttaa gcatgatgcc ctcttgctgc aaatccacat
      481 gaacacggag cccagttgat atatgtagtt ttagcaggca aattttaagg atgcaactgt
      541 gcagataagt aattcatgaa aagcccctaa aagatacaca atttcttcaa acatgggact
      601 ctgtgtctat aaatttgcaa atgactttga t
//
LOCUS       KCOD01002779             487 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 309237pyr ultra-conserved element
            locus uce-2260, sequence.
ACCESSION   KCOD01002779
VERSION     KCOD01002779.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 487)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 487)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..487
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="309237pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>487
                     /note="ultra-conserved element locus uce-2260"
BASE COUNT          156 a           72 c           94 g          165 t
ORIGIN      
        1 tcagatctaa actacaagat tcatgttact aattttattt aaaatacagt gtgtaatgat
       61 gtgtacctta aaacttcggt agctttttgg atatcactgg ttgatctgcc ctaagtttgt
      121 cgttcttaat ccattaaaag acaggcctgc ttgtaaatcc acaggtacag ataaggagtc
      181 actgtttgac tgtgtctgaa cccttttcaa atgaaaaatg tcagtggcag aaagggaggc
      241 tgaattattt tttaaaaggg ttttcaaaga ttctcatgat tcctctggta tcagttaaat
      301 gtgacatgtc catagacatg gctgtttttt agtgtgtaaa agcaagcaaa tgctgcagtt
      361 ttcatctctg tgtagagaga aaatgctgca gtataagtga taaacatgtt acattttcca
      421 taattaacat ataaagagaa agctaataca atttgtaaca atatgactgt gagaagcttt
      481 tatggtt
//
LOCUS       KCOD01002780             577 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 309346pyr ultra-conserved element
            locus uce-7212, sequence.
ACCESSION   KCOD01002780
VERSION     KCOD01002780.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 577)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 577)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..577
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="309346pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>577
                     /note="ultra-conserved element locus uce-7212"
BASE COUNT          210 a           71 c           92 g          204 t
ORIGIN      
        1 tatcttaatg tgtattcttt aaagaaaagt aatggaaatt ttaaaccata tgtacatttt
       61 acaaatgaat gtctgtgtct aatctcaagt gcatttgatt ggacaatttt gatgttccat
      121 gttcaattat taagcaaaaa tattcagtta tcagatagtt aattaagtgg aactgactgt
      181 attcattaaa atatttgttc caaacaaatg tatttaacat tcagatatta tgcagaagag
      241 gtgacaattg catatctcca tggagatcaa taatgggatt cagatcattg tgtaaagagt
      301 ctgcaagttt aatgcagaga gaatgtcatt attatttctc tcttaatgat ggtcattatg
      361 cgcaaacact gattgaattc catttgttac ctgcatttga gctgagagga ataattacaa
      421 tttaagtgtc tccattaaaa ttcataaaag aatatgaatg caaaaattat acttgaaact
      481 gacaaaatat actttgagga tataaattgt gttttctgat aggcctctta aaagtattaa
      541 aaatagcttc attttaataa gatggcatat aaagatc
//
LOCUS       KCOD01002781             556 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 309456pyr ultra-conserved element
            locus uce-5905, sequence.
ACCESSION   KCOD01002781
VERSION     KCOD01002781.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 556)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 556)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..556
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="309456pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>556
                     /note="ultra-conserved element locus uce-5905"
BASE COUNT          146 a          121 c          113 g          176 t
ORIGIN      
        1 tttttccagc cccattccag gagcttgcgt ggacaggaat tcgtttatgg atgggtccga
       61 tatgtaaata aaagccactg gcatcctcat tatgggggct cttttgaata aatgttagcc
      121 tttaagtgcc agctgtcact ctatgcatgg cctcccttct tacaactaac ctctctgtca
      181 cctcgccttg tctccctaac ttgtcctatt atgcagtacc aagctgagtc attgtttcaa
      241 gcaggaggtg acatgttaat agcttaataa tagtataatc tcgcaaataa taatatgctg
      301 tcacactgtc tgaagcacaa tgtttacagg agaagtggta atgtatgatg acagtaattt
      361 gaataaaaat gaatttactg ctcttgtctc atttgcagta aattttcgca tctttcatgc
      421 acaactggtg ctccatgacc tctttcatta ttgtgttctc agtggctgct gcctgcttta
      481 aagtgaaagg caggcaaatg aaacagaaac ctgcagcaag gggtctccag ccgtggtttc
      541 tggaaatctc actttg
//
LOCUS       KCOD01002782             716 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 309569pyr ultra-conserved element
            locus uce-6184, sequence.
ACCESSION   KCOD01002782
VERSION     KCOD01002782.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 716)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="309569pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>716
                     /note="ultra-conserved element locus uce-6184"
BASE COUNT          190 a          137 c          159 g          230 t
ORIGIN      
        1 ccatttattg taagctgaaa gaggcagact ggctatagtt tgtggctttt gcattattgt
       61 caccatgcta ggaacaccat ggctgcttcc ttcgtgctga caattgaaaa ctccaatatt
      121 ccatacctta aaaatctagt gttatagttt gttgcatggt tttccactca ttcatgttgc
      181 tcctcagtaa cttagcaatg accagtcaag atatgcacac accatattgt tttacgtgtt
      241 tgactagaac actgacagat taataggaag ggtaaatagc tccgcactct gtggtggctc
      301 agtgtgggct ggcaggattg actgctgcca gactttgttg tatttgcaca gaggaagccg
      361 cagcaaaagc ctgctggggc aaggtgacgt gggtcatggg tatttgtttc tcatctctat
      421 agaaaacaat tgtcctctca atggaagaca gcttttggaa actatgtggt gggcaagcat
      481 ttgtacttcc agagcgctaa ataaaatgca gagtggcaga tgtgttaagt gtctgcaata
      541 ccctgcatat catatttgca tctatttgac ttgctcagtt tagaagaaac agagtatcac
      601 tcagattttc atggatattt cttctgtgct caatactttt cgtcttaaga agagcataag
      661 ggcttcattt gtccatgaga tagctacttt ggttattgct tttaacaatt gctgga
//
LOCUS       KCOD01002783             392 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 309675pyr ultra-conserved element
            locus uce-6052, sequence.
ACCESSION   KCOD01002783
VERSION     KCOD01002783.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 392)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 392)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..392
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="309675pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>392
                     /note="ultra-conserved element locus uce-6052"
BASE COUNT          132 a           53 c           84 g          123 t
ORIGIN      
        1 aaaggaaacc aatagagaat attacaaaag acatcctttt aagagcctga ttgactttga
       61 aaccacttta gtcttccagt tttaaaagag gtttattctg attaactgac ctgaatgtta
      121 acagaactgg aattttaatt tgtattcaga ctgtaagaat atcatccact cagatgagac
      181 agtgttgttt aattaggtct agtagttaac tcagaagaaa gtaaatgtac tgctagaggt
      241 ttggaagact gctacaggct cctgggattt gcaggagttt ggagaagctt aaaaataaga
      301 agtcagtaat tttaggaatt agaaatgagt gcttagaagg tattggaaag gttctgcaaa
      361 gtctgtagtc agcatctttt aaccttgtgc tt
//
LOCUS       KCOD01002784             623 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 309777pyr ultra-conserved element
            locus uce-2319, sequence.
ACCESSION   KCOD01002784
VERSION     KCOD01002784.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 623)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 623)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="309777pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>623
                     /note="ultra-conserved element locus uce-2319"
BASE COUNT          173 a          137 c          112 g          201 t
ORIGIN      
        1 acctcttctt actcaggctc cctgcagctt gtgtacattc tttccttcac cagtcgctgc
       61 aaagtccata aattttaaag aaagcacatt tccctttgtt ttgggtttct ccctacaggc
      121 tcagccagcc tagcagatgg tagtattcct tctgatgcta agcatgattt acaggcttga
      181 gttattattt atcattattc attttctgtc accagtgcat tgaaggttaa tagaaatgcc
      241 agcatgctca ctgatttact tagtaaaata tttgttccaa ggtttaggtc agatgattgg
      301 tgtctgagtg agcttgaggt ttatgcatta tgaaaagcaa gctgacttga ccttgagcca
      361 ctagcaccag cactatatat tactttagtg gagtgacctt cagagcccca agacacacta
      421 gatgtattca acacatgttt tcttctccca tactactgac attgtataca ttccaggtga
      481 acttatgtaa tgtaagatga tactcacttt tcatctgacg aatttgagta ggatgacaca
      541 ttcaactaaa acacctcgga ggtaaccaac tacctttgaa tcccagatgc actgaggctc
      601 aacaagtact tctagctaat tga
//
LOCUS       KCOD01002785             691 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 309884pyr ultra-conserved element
            locus uce-4360, sequence.
ACCESSION   KCOD01002785
VERSION     KCOD01002785.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 691)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 691)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..691
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="309884pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>691
                     /note="ultra-conserved element locus uce-4360"
BASE COUNT          193 a          134 c          138 g          226 t
ORIGIN      
        1 tgatgaattg taggggagaa ctacccaagc ctgtctgttt tgtcttagat cagcttttct
       61 tctcattata atttaagtct ttaagggtct tcagtaggag cctgtaaaag tcagatcatt
      121 cattgctgtt gaatggccac tcgggccgtg attcatgcgc gggcgtctcc tttgtgccgc
      181 gcagaacaat ggctttgtgc ccgctccggc ccacagcggg ttaaaaatcc tgcaagagct
      241 gaaaactatg gattgagcaa aatctccctg tcagctctct gtgattttgc tgagagcact
      301 tggacatgct ggcattggat ttacaaattg aaaatcatta ataattctaa ccaggctgtg
      361 ataaatctga gatcagtctc gatgaacctg gacaccattt cataaatcaa aaagattact
      421 taggaatttt ttaaaatctg acgtcaaaat gtcatggtta ctaatggttt ttgtagatct
      481 cttacagtga tatatcattt atctacgcta catctaaaat gtgacaccag ggcagaaatg
      541 tgatgtcttt aatatcatga atacatttta tcccataata aaggtattaa caacttcttg
      601 ctgtgaattg tacttgaagt tctgtgcctg attcagtgct attgttatat taactggttt
      661 tcccccaaat atgtgcagac aaactgttgc t
//
LOCUS       KCOD01002786             487 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 309990pyr ultra-conserved element
            locus uce-4744, sequence.
ACCESSION   KCOD01002786
VERSION     KCOD01002786.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 487)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 487)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..487
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="309990pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>487
                     /note="ultra-conserved element locus uce-4744"
BASE COUNT          154 a           96 c           99 g          138 t
ORIGIN      
        1 ataaacaaac aagtgaaaag atgcaatgag gtgtaagaat agatttgcac agggcagaca
       61 actgaacatt taatttattt acctctccta acagatacct ggggtgacat ttattaataa
      121 acggcattat caggtgtctg atatgtagct cacagaaatt aattacccag cccatggtaa
      181 aaccataaca agcctgcagt gctgtaacat ttgtgctaat tgaaaatgag ataagtgctg
      241 tgggtgcaat ttgcattcaa tgcagtgtat taattatctt cagttctctt catgataaat
      301 atacctgact gaaccactct gctaatttac tgggtaatag agtcataagt ggattccctt
      361 aggtgaccaa ctacaggcat cgggctcttt ggaacatcaa ggccttcccc tttcctgagc
      421 acttaaatgg gttagcaacc acagatcact tttcttgcag gctggactgg aagtacgtgg
      481 cagcaaa
//
LOCUS       KCOD01002787             446 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 310097pyr ultra-conserved element
            locus uce-4729, sequence.
ACCESSION   KCOD01002787
VERSION     KCOD01002787.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 446)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 446)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..446
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="310097pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>446
                     /note="ultra-conserved element locus uce-4729"
BASE COUNT          156 a           69 c           82 g          139 t
ORIGIN      
        1 agccatccgc aaagggaaga aatccaattt tacactgaat acttttcact gcttatctta
       61 caaaattatt attatttacc ttcttagtta cttgtattca tcagggtgat gtgtgcagat
      121 tgtgggaatg ccaaacattc tccaaaaact gatgagtaag cagctgctct ttaaaccctt
      181 cacagtttgt agccacattt acataacatt aaataagtca acaaaggcat cattagctcc
      241 cattaaaata tgagcgaaga aatttaaacg aacaggagaa gctaattggt aagtaatgtt
      301 gtgtagcgaa aattatgact ataagattcc aaagttaatg agaagcccta caattgtgtt
      361 tactaaatgt ttaaaaatta aattaaaggt gaacatagaa aagttttctt gctgttgttt
      421 gggctgagtg agaactgtga aggttg
//
LOCUS       KCOD01002788             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 310206pyr ultra-conserved element
            locus uce-5972, sequence.
ACCESSION   KCOD01002788
VERSION     KCOD01002788.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="310206pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-5972"
BASE COUNT          214 a          120 c          110 g          158 t
ORIGIN      
        1 atactttacg taaacagaga aatcccaaac tatcataaca tgtcctcctg tttgaaagtt
       61 tataagcgtt tgaaaaccac attttatgac actacataaa gctgtttctc aattgtgcaa
      121 ttacctattc agcagttaaa taaaagtgaa atattgactt aaaacaatgt taatggtcaa
      181 agaatcatta agaaatcctt catcataact ttcacagcag gtggcctgta aaatgatcaa
      241 gaataatgtg ctggattctg tagccaccaa ggtcagtttc tgcatacaaa tcttgcagag
      301 ggaaaaaaaa gaccttcaga aagtgggcca ttcatctgaa ccaagttcag agaatttcca
      361 gcactgtgaa aagatatgtt atgcaagcac atagatgtat tcagtggggg tagactgaac
      421 cagctacatg gagactacaa aggagccctc ccatggctca tgaataagtc gaggaaatga
      481 tcagaaaaaa atgcagagat gtttagacag atggcccact taaaatgcct gggacagggc
      541 ataagcaatt ttaatgaaac tttagatcta ccatataaat tttttccctg cccccccccc
      601 cc
//
LOCUS       KCOD01002789             718 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 310316pyr ultra-conserved element
            locus uce-2152, sequence.
ACCESSION   KCOD01002789
VERSION     KCOD01002789.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 718)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="310316pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>718
                     /note="ultra-conserved element locus uce-2152"
BASE COUNT          217 a          113 c          150 g          238 t
ORIGIN      
        1 caggcattgc ccagatttgt ataagcttta gatttctttt caagcaacaa ctcatgtttg
       61 agaaatggta gttaataaag ggggagcatt tataaagatg cccagtgttg ggagaatgag
      121 attgtgagca agcacaggac caaagttggt tttcataggc acaagcagtt gaaattccta
      181 caattaataa gtgcagcgaa ggggttaaaa atctattggt tagtttgaga aatgttcttt
      241 tttagttttt tcctggccta gtctagagca accacgtgat acactgaatg cctgccagcc
      301 tctttcttgt tgatcctccg gagaccatct gtgctggggg cattgattag agtgtgtctg
      361 ctgggattac atcttttctg ttgccatgcc aactaatcag ctgattttgg ttaccacaga
      421 aacaaaatgt cagagctcac agtacggtaa catgaattca gcacaacaga aaatgttttc
      481 ttaattggag acccttttga ttttttggat tctgtgtaaa aggcagcttt ttaaaataag
      541 gactgtgcca attttattga ttaaaagcaa tgcgtaaaat tctactttac ataaggaaat
      601 taaattcctt tataagatgt ataaattttt atatgaggaa tgtgtttttc tattaaaatt
      661 tgttaatgcc agtgcctcta agagctttcg caatgtgagc ttaagaaaga aatatttg
//
LOCUS       KCOD01002790             646 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 310534pyr ultra-conserved element
            locus uce-1236, sequence.
ACCESSION   KCOD01002790
VERSION     KCOD01002790.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 646)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 646)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..646
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="310534pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>646
                     /note="ultra-conserved element locus uce-1236"
BASE COUNT          222 a          101 c          131 g          192 t
ORIGIN      
        1 gaattagccg cgctcgggca agaggggaaa ggaaagggag agggagggaa aaaagtcaac
       61 aaaaatcatc cttgtaaaat aagccatatt acctctagga ttgcccccca aataataaag
      121 gaaggtggat cgaaaggtcc cagattgagt gacagtcata tttctggaac taactggttt
      181 ttaaaagaaa aggttaggac agctggagaa tgcaggagag agatggctga gctctgaaat
      241 tgcttacaga attacatttg tttttcttgt gattttatta aaagtcactc ctcatctcca
      301 gaatgcgtga aaatatctac tttccactca gatacaccac attaacttgt tggaggcgaa
      361 tttgtttgtt tgtctatttt atttatttgc cagataagat tgatgcagtc ttattagcgc
      421 tatatctagt tagaggaaga gataaggatg agatgttttc tttttattcc aattactaga
      481 cttgtcacct aactgaataa ctgatatatg attatttatc ttgagtaaat agaaatcaga
      541 aaagcagcca acttaacaca tacaaacaaa atatgtatgt tccttattac tatataccac
      601 ctatacaatt gaagggatta aaactgtggc cttaaaggag aaagtt
//
LOCUS       KCOD01002791             500 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 310640pyr ultra-conserved element
            locus uce-6173, sequence.
ACCESSION   KCOD01002791
VERSION     KCOD01002791.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 500)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 500)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..500
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="310640pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>500
                     /note="ultra-conserved element locus uce-6173"
BASE COUNT          172 a           90 c           84 g          154 t
ORIGIN      
        1 aaatgtaaga aagcttaaaa gacttaaacc aggtttcatt taataagaga aaataagaag
       61 cctgccacac agaaaattac taaattatgc tcggggttcc actcttctct tttgcctcag
      121 gcttttggga cattaaggcc atgttataaa tcctggtcag tgttttttct aaggagcaga
      181 aatgagagtt tattagcatc acagtggttg cctcaataat gacaaaacag tcgctcatta
      241 ctgctcatta gattcatatt agattcattt gcaatagcaa tacatcttct attcatactc
      301 gattgcaaaa caacagatat gatttgacac ctgctgtagt acagaattca ttagaaagta
      361 ataatacaaa taggatttca aaggatggag tcttctgtct ctgataggtc taaaatttgc
      421 catttaatgt agaatttata tcggataaac accacagcag gcagtcagct tcttcaaatc
      481 atgtgctcca ataaaatatc
//
LOCUS       KCOD01002792             666 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 310751pyr ultra-conserved element
            locus uce-4866, sequence.
ACCESSION   KCOD01002792
VERSION     KCOD01002792.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 666)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 666)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..666
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="310751pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>666
                     /note="ultra-conserved element locus uce-4866"
BASE COUNT          187 a          150 c          156 g          173 t
ORIGIN      
        1 caaagctcca tttgtgcaag gtcttcaccc ttcctgctta ccatttccct agggagcagc
       61 agtgtgttgt ggaaagtact ggtaaccaaa gacagaaatg caaccctaaa cccgatggct
      121 ccagcccagt ttatcccctt tactgttccc tctcctgttg tttttttttt ttcttttaac
      181 atgcaagttg ccatgaaaaa tttgttaatg aaatatttgc ttagaagtct gctctgggct
      241 aggctgataa cctatctgtg tttgagtttg gcttcccata ttctaaatac tcgtcttctc
      301 tctgtttagc ttattgattg gtttggcagg aaaagcagcc ttgtcatcag tgaccaaggt
      361 caaaccaaac aaaaagggac aggaaaaaga aaagaagaag ttggatggat gagctcagtg
      421 agacaggagt ggaatatctg acctcctgca acgttcctcg gagatgggtc ctggtctgcc
      481 caggagcctg ctggctttca caaggtcaca agaaatcact gacatcatca gaaacactca
      541 gaaaccacag gagagagaga gctgagagcc ccacagaggg aagaggtgga cacaaccaca
      601 ccaaggctgg atgtctcctg agagctctgg tgcagagcaa atggggtgct gagtcaaata
      661 tctcaa
//
LOCUS       KCOD01002793             797 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 310862pyr ultra-conserved element
            locus uce-5615, sequence.
ACCESSION   KCOD01002793
VERSION     KCOD01002793.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 797)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 797)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..797
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="310862pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>797
                     /note="ultra-conserved element locus uce-5615"
BASE COUNT          242 a          151 c          184 g          220 t
ORIGIN      
        1 gggaaactga gataaatggt gaagcatttt ctgtgttgac atgatgttcg cctgtccgat
       61 tgcatccttc ccaacagaca gcagagaagc aattacaaaa aaagacatct gtgccaaggt
      121 ttggctagcc agggagggca agctcttgtg tttaagaggt agagaatcca atcgatgaaa
      181 atgtctgggc ctgttagcac caataaagct gaaggccact gggaagctca gagagggtct
      241 tttgttgcgg agatagaaaa gaggccaaag ctgtgacact tggggaggaa tagggtcagc
      301 cagtacgatc atccatcttc ctcaatggca gctttctgtc agtttttaac cctgctcagc
      361 agaggatcta aacctctatt gttggcacca gccaattctc agccaagtgt aaatgaagtt
      421 aatattcact gaccttatgc atagccaatg aaggcccttg atgtcatcct ggaaataatg
      481 ttatctgaca cttcaaaaag cagatgttgg caggttgttt gtggtttttt gctgagccag
      541 tacgcaaaga cgcattgttt aggcatttaa actgatttcc ataataacca ccaataggcc
      601 tttttgacct taaattgaca tagttatggt tttagtttgc atatcctgct gctcacaaag
      661 cccggctaac ctgcactgaa tgatcaggga gaagtagctg ggttcactta gataagaaat
      721 acatgggtca gagagaaatt tatttatgct gataaaacag taattaaaat agtttaaata
      781 gttcaaagca gacattt
//
LOCUS       KCOD01002794             614 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 310971pyr ultra-conserved element
            locus uce-546, sequence.
ACCESSION   KCOD01002794
VERSION     KCOD01002794.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 614)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 614)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..614
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="310971pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>614
                     /note="ultra-conserved element locus uce-546"
BASE COUNT          209 a           98 c          108 g          199 t
ORIGIN      
        1 aatattactc ggcatgtttg tcaatgtgct gtataattat taatttgttc attgaggcag
       61 ctatataaat aaatagaaag cagaatgcca tgattaaact aacattagaa atccagggtc
      121 aaggagccct gttatacagg gatctaaata gctttcccag gtcctatttt tacatctcca
      181 tacagatctg caggtctgta actgcgaatt aattggcaca catttagatg ccaacagagc
      241 ttttgtattc tcagtgcaca ttttgtcttc tcagagtgag atgttagtaa tggaggtttt
      301 aatattaccc ctaggggagc accagaaaat cttaacaatt tccttcacta gagtattttc
      361 attagagcta aatgctgtgc aatttacatt tgaaatcagg tgtagggtaa gtataatgtg
      421 acaagacatg ttgcaatgtt aggttttttg ttcaaatgtt ccttatttac tgcaatatac
      481 cctcaaaaga taagcatgca attaaaataa atatcttgat ttttaaccac tcctaattga
      541 actgttattg ggataataga agcaaaaaat agaatcaggt ttaaaaggac ccaaagcaca
      601 agattaaaat atta
//
LOCUS       KCOD01002795             419 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 311077pyr ultra-conserved element
            locus uce-5321, sequence.
ACCESSION   KCOD01002795
VERSION     KCOD01002795.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 419)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 419)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="311077pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>419
                     /note="ultra-conserved element locus uce-5321"
BASE COUNT          135 a           79 c           81 g          124 t
ORIGIN      
        1 aaagggtgga tattggtagc tggagaatat gttctgcctt cccctcatat tgcagctgga
       61 cagcaatagc caaccttcac ttatttattt atttcctgca cagaggggag gaaaatatag
      121 gtccatgaat caatctagat aatggggaag gctgaatgta ataaataata cagtaacaac
      181 cctaaactaa tgagctgttg ctaaggtaca tttcacaggc tcatcctcta tataaaaagt
      241 cactaataat cccttggtgt aatcagatga taaagctttg ccataaggca acacctgtgc
      301 aattaaagct gtggattctt ttgcacgttt cattaatttc aggattttgt aaaggcacaa
      361 tgactacact aataatctag tctacttgac tccatgtcta ctggaaacag ggtgtctaa
//
LOCUS       KCOD01002796             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 311183pyr ultra-conserved element
            locus uce-675, sequence.
ACCESSION   KCOD01002796
VERSION     KCOD01002796.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="311183pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-675"
BASE COUNT          204 a           87 c          108 g          203 t
ORIGIN      
        1 taaatatatc cttgaaagca aacctgtatg gtcacattca gtaaatcttt tgttttaatt
       61 tcattaaggc ctgatttagt caggtacaaa tggaaaatct gtagtatctt taaagtaaaa
      121 taaaattggt tttgattcag ttgaagtcaa ccatctcatt taaaattagc ccagaggtct
      181 tgtaaaaatg ctagtaatct aaacataata atgcacattg cccaattgct actgtatatg
      241 atataggttc agtgctgtaa tgctttgaca gcccattact gaatgtaatg aacagctatt
      301 tttaaacaga agaaattcaa gttgacagct tggcaatgaa attcagctag tggcgtaatt
      361 tttgtcgtct tcagtataga gagtggattt cagttttgtt taaagaaatt tgtgtcatgg
      421 actttattgg agcaagcatt tttttgcttc agtttactga agagcttaaa ctaaagctgc
      481 attttatcaa atcctgaaac ctgcactcct gtcagaactg tgaaaagtca gtgattaata
      541 aaaataggtt gaagtcttaa ggaatagaat gtactggaat tgaatgtata atcacaaact
      601 ca
//
LOCUS       KCOD01002797             706 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 311293pyr ultra-conserved element
            locus uce-7787, sequence.
ACCESSION   KCOD01002797
VERSION     KCOD01002797.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 706)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 706)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..706
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="311293pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>706
                     /note="ultra-conserved element locus uce-7787"
BASE COUNT          238 a          152 c          125 g          191 t
ORIGIN      
        1 tgggaatgcc cacagtgcac tggcactttg caaaaagcat catgccccct ctgaagaaat
       61 cacagtctaa ggagcaggat gtgacaccaa actgagaaat tattctaatt cgagccagca
      121 tgccttgttt acccctcact attttttgac ctcactgtta atatgactta acagaaagca
      181 aaaatcccta tcgtccagca caatcggtga ctaagttcat tgagagcagc tataaagcct
      241 taaacaagcc ctttattttg tgttttaaga agtgtcataa ggagttaata ggacacagct
      301 gtacaggctc tttctaacaa gcagcttctg tcgctttggt caccacaggt gtctgtgtaa
      361 cctgcaaact cttattacta gtgtatcaaa gttgtgctac ttaatagatt tctttagtaa
      421 aacacaacaa agcaattaca tggctgttga tcgtcagtca tcccctcaaa cacagttttt
      481 caaaagaaac tacactgcaa ttttttgtca ttgtaaaata aaagaaacta gagaattaaa
      541 tagaaaagca gacaatagaa cagcaggtag tcaactgaac ttagccacta cagatggttt
      601 agaaatagtg tttccttctc caccaacttg tgggataaaa gaaaaggagg aggctcctta
      661 ctgcccatga atagcaacac caaaagactt aagcaacttt ccaatc
//
LOCUS       KCOD01002798             717 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 311405pyr ultra-conserved element
            locus uce-438, sequence.
ACCESSION   KCOD01002798
VERSION     KCOD01002798.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 717)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 717)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..717
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="311405pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>717
                     /note="ultra-conserved element locus uce-438"
BASE COUNT          193 a          156 c          137 g          231 t
ORIGIN      
        1 acttgctcgc aacctgaatt tggcttgctt tgatattgag gcatctttcc ctcccctgag
       61 aaacccccac ctgtatgaag gtcccgttgt actttactgt ggagaactgg gtgagtccat
      121 ggtaaataca gtcagcagca aatgtgttca catttcacta cagagaacac atgaactctt
      181 tgtacctatg ctccctggct ttaagaaaac attgtttcat gttctttctc taatcagcct
      241 tgtctgccag ctcagagaac agagaagttc attgttatat gcagctgtca tttgttccat
      301 ctccttgctc tttctgactt caatatcttt gtggtattta gtgaaagtaa ttttcagtca
      361 gaaatcttct gccctttcag taagtgcaag tatagcactt catcaatggc caaagaattc
      421 caagctatct gggatgtatc aggacagttg ataaaacctc acagagcaac ctatgatagt
      481 acatcccatc ataaataaaa aaaaaacaga aagggccttt gtcagtgttt atctgtagcg
      541 cttttattct ttgcccttga tttcctcttc agaaaattga tgcaccctta aattgaagca
      601 ggaggcttga caggtgatgg ttagtgtgat aactgctcag atttcatcag ccagtgtttt
      661 tctggtggtg caattgtagg aactttcagc tagattacct gtcatccact acatcag
//
LOCUS       KCOD01002799             626 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 311513pyr ultra-conserved element
            locus uce-6758, sequence.
ACCESSION   KCOD01002799
VERSION     KCOD01002799.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 626)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 626)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..626
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="311513pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>626
                     /note="ultra-conserved element locus uce-6758"
BASE COUNT          176 a          146 c          122 g          182 t
ORIGIN      
        1 caattagcac catctctgta cacacagcca tgacaaaagg gaagccggga gcctgaatat
       61 tcacccaaag cacttaaaag gccagcataa atcatgcggg tcttgcatgt tttttgtttg
      121 tgtgcaacta gcagtgtggt gtgctattca ctctaggtta agccttcagt gctgtctaat
      181 aagtggccct tgtataaaaa cgtgatctgt gcttttccag atatttgtat gtcaggcagc
      241 tacacagcag caacttctgt aatcccttct cctgcagtta aagctactag aaaagcttaa
      301 taatatccca gaggcaaaga tgaaacagta tctccacagt tactgtttgc tgtagagagc
      361 ttttgaagtc gagcttaaga tgtctttatt tccctaccag aatccagtgt tgtcacgatg
      421 atgtcttttt gcttgttcca agaggctgca gtgttgccat aaagcattag ggaatgtgaa
      481 cagcttttca tcaggggctc ctagaatctg taagtacagt ttgtcactac agaaacccac
      541 agccacccta ccagcaatct caatttaaaa ccccacactt ttcgttatca ggtttataac
      601 agcctcaacc ttcactagca gcttac
//
LOCUS       KCOD01002800             717 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 311626pyr ultra-conserved element
            locus uce-1497, sequence.
ACCESSION   KCOD01002800
VERSION     KCOD01002800.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 717)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 717)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..717
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="311626pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>717
                     /note="ultra-conserved element locus uce-1497"
BASE COUNT          222 a          148 c          140 g          207 t
ORIGIN      
        1 accaccactt tatttaaact attgtgcctc cttcagtaaa cattcagtac atgactgaac
       61 cctgtatgaa cttgtgcttg ttgctgctta aatagattct gagcttaagt gaaaaggggc
      121 tgctattgag cacaggacaa aaaagttgca tgtgcattaa tttgcccaca cacaagctct
      181 taccccccaa aatactgcat tcacagaatc ttttattaaa acacctccag gcctcaaagt
      241 actaaactga aagcaagctg ttaacagaaa tgagtaatta ttgaagctct aacaggcagc
      301 tttcattgaa gttgattaca gcagccatat aatcactttt acggatgctg taatcacagt
      361 agcagggaat gcttgacttg gttcttattg ttttcactca gggtggaggt agggggcctg
      421 caagaaaccc gttttaccac ctcagtacaa tttctgctgt aaaggaaatc tacacagcac
      481 tgaatgaagc agagaatcat tcattctttc tttattagca ttttcccctc cctcacatga
      541 gagtctgttg gagccaggaa attgctgtta ttcaatatgc aagccagagg ttgtaatgac
      601 catttgggag ggtatgacca acaattacag accttaatga ataggtgtaa tctagttgag
      661 actaaacact agtagcagct ctggtgctgt ctctggttaa attaaaagaa cagcaat
//
LOCUS       KCOD01002801             674 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 311734pyr ultra-conserved element
            locus uce-4716, sequence.
ACCESSION   KCOD01002801
VERSION     KCOD01002801.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 674)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="311734pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>674
                     /note="ultra-conserved element locus uce-4716"
BASE COUNT          242 a           98 c          130 g          204 t
ORIGIN      
        1 cccccaacga gttgaaaaga acattgttac atctatagca cttacaatgt cctacacact
       61 tttcatcagt tctgttgact tttgaaagtc acagtcctga tttagaaggt ttaacatata
      121 cacactaggc catacaatat taaactggaa ataaaacata acggctttta tatggcagaa
      181 cctataggct gaagctataa attaaagatt tatactttgt cttacgaaat gcagcatgtg
      241 aaaaaggata ttgagacctg gatggatgca tcaagaagta tcaatgattg ttacctgcag
      301 aggtgttaca agaaatttca tctgctgcaa cgaagacgaa ttgatttctg caagagaaga
      361 taaaattcac aatactgctt gctgactggg aaatgtgcta gctgccaatt gacttgatgt
      421 ttacagataa agggtgctta attttaatga atgtagcaag aaaaagtgtt gatatagagt
      481 ttataaggat catgaggtag acatgctggg atcttttaaa tgaaataatg gtgacatttg
      541 gatatggact atgtacaaac tcttgcattg gaagcttcat gtttagtgtt acagatatgt
      601 caatatattt atgaagtcta agaaaaataa aacaatatat tgatatagct attaaagggc
      661 actactgcaa aata
//
LOCUS       KCOD01002802             536 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 311842pyr ultra-conserved element
            locus uce-3381, sequence.
ACCESSION   KCOD01002802
VERSION     KCOD01002802.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 536)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 536)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..536
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="311842pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>536
                     /note="ultra-conserved element locus uce-3381"
BASE COUNT          174 a           94 c          103 g          165 t
ORIGIN      
        1 tcttgaagct tttgagatgt tcctttttta tggacctcta gttacaatat ttgcagtttg
       61 gatgaatagc tgaagttgca ccaaatggca gcattcagag gtatctgacc aagaatgatt
      121 gacagtgtct gtaactactt attatgtcaa agcttcagca caccgattga tgggaaatga
      181 tgtataataa attagaatga tcacacatca tttcccatcg attgaaatgc caaatccttt
      241 gatggagtaa tgagttatga ccaatactac tcactgtctt agtaggagat tgattgcata
      301 tcccttcatc aatgtgatca aacaactaag gaatccaaag tacacatgta gtctactgca
      361 ctttcagtgt aatgtaagag caataaagtc agtgttgctt ctgtggtgta acctgggtat
      421 atgtgaaaca tgagcaaaat gtggccaaat tcattcaata tcaaaacttg aaagaagtgt
      481 aagctgattc cccctcagtt ttacatacca acagaagact atggggttaa atttac
//
LOCUS       KCOD01002803             791 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 311950pyr ultra-conserved element
            locus uce-502, sequence.
ACCESSION   KCOD01002803
VERSION     KCOD01002803.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 791)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 791)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..791
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="311950pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>791
                     /note="ultra-conserved element locus uce-502"
BASE COUNT          254 a          151 c          159 g          227 t
ORIGIN      
        1 tataatcact gcatgaagat ttttgcaaag gagaatatat tcttttttag attcaaagta
       61 attgctatag aaccacagac cttaattaat tcaggaactt gagaggagtc cagcagtctg
      121 caaatgccgc tgcagtgggt tgcagggata actatattct gtaccaagag gtggggaaaa
      181 aaattatatg agttttgaaa cacaacctaa cagaaattat ctcagacgta attcaagtct
      241 ccggctcttg catgtcattg agaagtggtc tggttgtact taaaagcagc aatttcaaac
      301 ctaatagata catgtcaggc aggacaggca ttatgtagca aaaaatgaaa tggtaccatc
      361 ttcttcagct gatggaagta ttgtctcaaa cgctcctcct tggcctgtac ctctgagtca
      421 ctcatgctgt caatcaagtg ataaagaaaa tagccaacag cttctgtgga aaaaaacaag
      481 agaaagcatt ccactaaaat taccgagact gtcatgttat caagattaat ttataagaaa
      541 tcattttggt gtgagatgtc accctgatga gaggctctga aatggcaaca atgatcactg
      601 aggcatagag attatgtggt ttgggagcac atatctaact ggtgagtgaa aggaatatta
      661 attattttca gacctagtga cagcttttca gtacagaatc ttacttcaat ctattttttt
      721 ccactactgt gtgacagaag tggtactgcc caaggccttc cccccctttc ctgcctgcta
      781 ccccaaatag t
//
LOCUS       KCOD01002804             667 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 312061pyr ultra-conserved element
            locus uce-254, sequence.
ACCESSION   KCOD01002804
VERSION     KCOD01002804.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 667)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 667)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="312061pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>667
                     /note="ultra-conserved element locus uce-254"
BASE COUNT          201 a          120 c          118 g          228 t
ORIGIN      
        1 atactccaga taatggggag agggtggaga cttaaagtca ttaagccaga aagtaccata
       61 aatcttacta agtttatgcc acccttgata caaacttcac actaacttgt tctctctggg
      121 aaggctcaca gttgggtttt ttttcatttt ggggtgagca ataatagtct ttgtaggatg
      181 gctgcagtgt cagcatttat cttgaaactc ttggatatta gttttgactg cagtcacctt
      241 tctgacaagt gttattgcga ctgtgtttta tatccctgtt caggatgatt tctaatgata
      301 atgctctgtc tacctcactg cttcacacta aattatagat gccactatga caggacaaac
      361 tatatccaag tgctaaactc tactcccttt gtgtgatgtc agtgccttca ctactttgtg
      421 cctagaatta aaatcaggat aggaagatat gcaaaacatt tctgcttaaa aataatgttc
      481 tgtcagttat taaacaagtg atatttcatt taatcagctc aaggggatta ttttaaatga
      541 aaaggcagag agtatgattt tattaacaca ttcctgccct agagtcctac tgtaataatt
      601 cgttacttga ctaaattaaa aagttataat tcagtccttc cacttacgaa tagttaaatt
      661 tcattag
//
LOCUS       KCOD01002805             736 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 312169pyr ultra-conserved element
            locus uce-4585, sequence.
ACCESSION   KCOD01002805
VERSION     KCOD01002805.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 736)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 736)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="312169pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>736
                     /note="ultra-conserved element locus uce-4585"
BASE COUNT          239 a          136 c          130 g          231 t
ORIGIN      
        1 ataataataa taatagctgc ccattgtata gggcactgca tgcaatattt ttaatgcctg
       61 ctaatgaaat gtgctattaa ttattaggat gtggtttgca ccagcacgtc tcaactttgt
      121 attcaaagtg acacaacttg aaaaactgcc tattggaaaa tcctccttaa aaagcaaatg
      181 gcatttcaat cagtatgaga acttgtaact cttaccagct ctgctgaaga gaaatctgta
      241 gctaaggggt taatcagatt agatgggagt ggttataggc tcagtgccac aggttttgcc
      301 ctttgtggct tctcacatcc cagacttgga aaatatgagc tgtgatactg agaaaggtaa
      361 gaagccagca cagccccata gtgataaatg agtttgcatc atctgtcatt agaacttcct
      421 gccaacaggg tcattcccta ttaaattacc acttgtcaat gtttaaaata ctgattgata
      481 aatgactgtg ccaaaactga taacacgaca gcttttattt tctaatattc ttggttacca
      541 cattctgcta cttcaagata cagatataga atttagtgaa agacaattta atctaatata
      601 aaactaacag gtactgtata acgattggtc ctgatataca ttacatacta ttcttcttgc
      661 caaaataaac ctactggtga tttagcgata tgggtagatc caagtttcac atttcatcaa
      721 atgctagtaa tctgtt
//
LOCUS       KCOD01002806             809 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 312282pyr ultra-conserved element
            locus uce-277, sequence.
ACCESSION   KCOD01002806
VERSION     KCOD01002806.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 809)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 809)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..809
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="312282pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>809
                     /note="ultra-conserved element locus uce-277"
BASE COUNT          225 a          161 c          156 g          267 t
ORIGIN      
        1 cccttatcac tcatattcaa aaagacactt aattaccttc tgtctgaact tcaggaaagt
       61 tgagttccac gatctctttt tctttgatta aaatgaatgt ttgttatcag cattactatt
      121 tactacccca tgatcaaaaa caaataaccc actttgtttg tttcttactg caaatgaatt
      181 aaattagacg ccattaggag cactagctgt ttatatcctt gtttcagcag tggtagtatt
      241 tgaagtttcc tgcggtaagt tcattactcg tattttgtcc agaattagtg aagcgtgctg
      301 aaaattgcta atgacagatg tttctccact ctgtcacact tcttgtatca tttgatttgg
      361 aaagcaacat acggtgttct gctctatcag tatgtcacag actgtctgta aacagctggt
      421 cataactcag ttcagtgaaa accattactt tccaatgaag tgctggacac cctccaaatt
      481 gcattttggc atggcctgag ctgcataatg cacaaagttc ttctgttctg aggttaccta
      541 aggaaggacc cccttccact tgtttattgt gtttcaggca aatggttaga taaggggtga
      601 aaagaacagg aaataaaaat tttcttctct caggagctca taaaagctgt gactggtgct
      661 gtgctaacag acctcaccat ttctgtttgt gcctcaggtt gaatggggtg tattatcagg
      721 gtcagggcac acaagatgat gacagattga aatgtctcct atcaaatagt tgtggcattc
      781 taacattgct atgactatgg ggctattcc
//
LOCUS       KCOD01002807             624 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 312394pyr ultra-conserved element
            locus uce-4443, sequence.
ACCESSION   KCOD01002807
VERSION     KCOD01002807.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 624)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 624)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="312394pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>624
                     /note="ultra-conserved element locus uce-4443"
BASE COUNT          199 a          101 c          131 g          193 t
ORIGIN      
        1 tttgacacat ggggcaaatg tgtgcttaat ttctcccaaa cagaagaatt aatataataa
       61 taattaacac agatgagaac agaattaaaa tcaagtacag tcaggagttc agtttaatgc
      121 caggtgtctc acattgtaga tggttgaaag tagcaaggat tttgcctctg gcacttatgg
      181 gagctgaagt gggccttgga tgcagaaaga cagaattttc tatttaatgc acaaaaccag
      241 aagcaacagg ctcatttagt atcagtaaag gtcagttaaa attatagaga catcctttgg
      301 agcaaatcct ctgccttgta tttgcatatt tatgaattag agattacaac aggctatttc
      361 atttattaga gcagtactgc tatagttaat agtctgtcag tatttccatt ataaaccccg
      421 ttcttcagtg tttaatatct cagccattta aaatcacatc aggaagccag ttggtcttag
      481 gttgccggcc aggtgcaatt ttttgttatg gattattttc agtaatgaaa tactgctcat
      541 catatatgca gatgagccac agcatgtctg catagcaagg tgtgtagact gtggcgtttt
      601 tctttaggaa agaagggaaa agag
//
LOCUS       KCOD01002808             585 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 312502pyr ultra-conserved element
            locus uce-7082, sequence.
ACCESSION   KCOD01002808
VERSION     KCOD01002808.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 585)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 585)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..585
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="312502pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>585
                     /note="ultra-conserved element locus uce-7082"
BASE COUNT          138 a          122 c          151 g          174 t
ORIGIN      
        1 ccatcctgtt tagtttgaag tgccattttt tgaaaggcag agttttctgt aagaaaagga
       61 aggtcactga tgttgctgag tgcaccattt cccctgaatt tcatgcggct gaaattgaat
      121 tcgtagtgtg gttttgccca agaagcctcc ctggataata ttaagtgctg tccatgattc
      181 tgtagtccag atggcccatg gctggcagcc gtagaaaact ggtttctgct cagcagttct
      241 tcactaatct ggagtgatcg agccagcggt actttaagag atgtggagtg gccataacct
      301 tccctggttc catcctgcaa gcttcttgga ggtaccccat caccactctg tagtccctcc
      361 ggatggtgct ggctgggtct cccaggtcgc ctaattggat ggaaggaaac tgatgtgagc
      421 aggacttgca caggtaggga gggatgggtg agggggccac tcctttatta gaaggccttg
      481 cttgggtaac atcacttttt gtgttattta tttttctcta aaaagtctca gcatcagtca
      541 gttttaaaac ttgttcgcaa aaaaagagaa gctttttggg caaag
//
LOCUS       KCOD01002809             217 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 312607pyr ultra-conserved element
            locus uce-4045, sequence.
ACCESSION   KCOD01002809
VERSION     KCOD01002809.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 217)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 217)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..217
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="312607pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>217
                     /note="ultra-conserved element locus uce-4045"
BASE COUNT           67 a           49 c           39 g           62 t
ORIGIN      
        1 aagcaagtac agattccagg tgtcttcagt ttcttcttgg aaccttgggg ggtttggaat
       61 cgccaagtcc cctgtagaga aagatgttcc cttggcttgc ttccgactcc ctactgcaac
      121 tcaaccacct tgagtttaat gttatatcat ttatctaaat tgcaaaagac gaacaagcaa
      181 taatgagtac acaaccacaa aaaagttcta aacttta
//
LOCUS       KCOD01002810             493 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 312812pyr ultra-conserved element
            locus uce-7221, sequence.
ACCESSION   KCOD01002810
VERSION     KCOD01002810.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 493)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 493)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..493
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="312812pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>493
                     /note="ultra-conserved element locus uce-7221"
BASE COUNT          163 a           78 c           93 g          159 t
ORIGIN      
        1 gttctgaaaa ttaaccaata attttcaaca gatcaagttc ttctgtgata tacatttaag
       61 aattaaactt aaattagctc tttaaagtgg ccgtgtgatt taattattca aaatgtacac
      121 aaatttaatg agtttttaaa tattaaaact attctctatt gtcaccactg tgagctctta
      181 atttacagag caattaagtc aggaccctca tttatcagta catgtgcgtt tgttgaaaac
      241 atagtcagtt tttattaatt gatgctatag aaatactgag gtaaaattaa tgtgtgtgct
      301 tcagaggtca tgctggcgat agtaggtagc tagcaaggag caagacgtga gataaataag
      361 taactgctgt tccctgatta cagtagagat agctgaaata ttaagtggca caatgggcac
      421 tatgcttagc caaaatgctt gcaaaaaaat gccccctgag ttttctctgg caagcatctg
      481 tcatggcagt agc
//
LOCUS       KCOD01002811             523 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 312921pyr ultra-conserved element
            locus uce-4484, sequence.
ACCESSION   KCOD01002811
VERSION     KCOD01002811.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 523)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 523)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="312921pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>523
                     /note="ultra-conserved element locus uce-4484"
BASE COUNT          148 a          107 c           99 g          169 t
ORIGIN      
        1 aacatatcta cgacagaatc acattgatgt gtgcagctgt gaaagatgct aatgcatagt
       61 tgcatgtaca gaacttttgg gtgagcttcc ttttcttcct tgcaagtaaa agcagtttgt
      121 tctcccatta caaccacttt ttcttttctt tgcaggctct gtttgtagtt atacagtcag
      181 gtctccacag agtaatttac tggctgaatc tctcccagaa tccagcttga aaccaagctg
      241 taaaaacagc tgagagtgta aataattcat gcagacaata tgactttttt atgtaaattc
      301 ggtgcattaa ccctctatta taatgatgga cgacagatat gggcgacgtt gccttggtaa
      361 gagctaatgg atggccgcca taaattcact gcacatttta ttgtgttgct ggaaattgtg
      421 ccttcaggca atgctgttta cttttatgta aaactcaggg ttccctaaat attacaaata
      481 ttttacatcc gactcctcag catttgggca cagcacacaa atc
//
LOCUS       KCOD01002812             374 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 313020pyr ultra-conserved element
            locus uce-3199, sequence.
ACCESSION   KCOD01002812
VERSION     KCOD01002812.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 374)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 374)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..374
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="313020pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>374
                     /note="ultra-conserved element locus uce-3199"
BASE COUNT          140 a           60 c           82 g           92 t
ORIGIN      
        1 ttcatcccac tagaaagttg cagagcacac agaggatcac agaaaaacga ttcacagagt
       61 tccagggaat tcatggtgac tcaaaatata tctcctcaag agggtttaga gtaaaagata
      121 tacaatatga agaacaacta aacaatgcac aagttgtgtt gtaatcacag aacaacatga
      181 gcagctgagc agaaggaaga tgggcagtgg aatgccatac agtaatcagc actgttgact
      241 aatcagaatt tgagacacta gaaggtaata agggtattat aaagaatggc ttattgaagg
      301 agcagctgtt tatgtgtagc tcactgttta aatgaattcc actagattgc catggtatga
      361 gttttactca aaaa
//
LOCUS       KCOD01002813             528 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 313122pyr ultra-conserved element
            locus uce-6034, sequence.
ACCESSION   KCOD01002813
VERSION     KCOD01002813.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 528)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 528)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..528
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="313122pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>528
                     /note="ultra-conserved element locus uce-6034"
BASE COUNT          169 a           93 c          105 g          161 t
ORIGIN      
        1 tatattaaaa accattaaaa cagctgtttt gctgtaggga atattactcg tgggttgaat
       61 gcagagatat gtgtaggtat ttattcagta atcaatcata gagagaaaag acctcgaatt
      121 tcagttggaa gtttttattt ttatcctttt ccttactact ggtctttaaa cctgctctga
      181 ggaaagctat acatgcccgg ctggtgctca tcaaaagcaa gcaatcacag ctaaatcagc
      241 atgcaaaatg ccactcaacc ttgggccttt attaaaattt gctgggactc aatttgagat
      301 agcgatcgtt cttattaaaa agcaaaatgt aagatagttt ttttatataa atctctggat
      361 ggaatggaat tgttaatcag cataggctga tgtgatttct ctgttgcaaa tcctgccgag
      421 ggctcagaag tggcacatta ccataattcc taggctagag ctggcagctt gaaaaagacc
      481 tgcaagaatc tttaaaatgc ttaagcaaag ctgtaagtca cagcaaac
//
LOCUS       KCOD01002814             626 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 313235pyr ultra-conserved element
            locus uce-5596, sequence.
ACCESSION   KCOD01002814
VERSION     KCOD01002814.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 626)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 626)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..626
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="313235pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>626
                     /note="ultra-conserved element locus uce-5596"
BASE COUNT          174 a          158 c          136 g          158 t
ORIGIN      
        1 catcatctgc ctccccaccc cggggtactc ttgccaggtg ccagagacac cctgaactcg
       61 ggaccctgtt gggtcagtgc cacccacatg cccatggtgc cagtgctctc cttgctgtcc
      121 caaatgatgc cacccctgac agcgagtgtg ccaagctcgt catacgtcat ttagtgagac
      181 tcattccaaa tcagtgctaa ggtaaacatg cttattataa ttatccatgt aatcaacaac
      241 agcagaacaa ctttctaata tgcaattaca gccatctatt gattttacaa tgtaatccgc
      301 tccgattgat ttaataacac aattataggc tggctctcgg gatattagag tgggagattt
      361 tcataaactc caaagcaaaa aactaagcgg cttttaaaac aacacagtca gatggctgtt
      421 tggggaatta ttagcaatat gaaatcctct aaatctggcc gtcgttacct tctgaaagga
      481 atttctatta caaaaatggc aattgacagc ctaagagagc gcgaccggga ttgctctgct
      541 gcttttcagt gcttaatcca tcgcaaaggt gaccatgggg gacaagcgag tccgaggctg
      601 gcaggagggc acgggcacct ctgccc
//
LOCUS       KCOD01002815             616 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 313344pyr ultra-conserved element
            locus uce-3580, sequence.
ACCESSION   KCOD01002815
VERSION     KCOD01002815.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 616)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 616)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..616
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="313344pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>616
                     /note="ultra-conserved element locus uce-3580"
BASE COUNT          170 a          142 c          160 g          144 t
ORIGIN      
        1 atttgcaact tgtgctggaa agctcactga ggggttggtc agagtggcta ctttagcgcc
       61 ccttctgttt gaggaggaca caggaagagg ttctttacca cgtggcgaag agaaaggttt
      121 cggtgacgca gcattgctga caaatccatt gctactcaaa cacacagaca ctgaaattaa
      181 aaatgggaat acgcatattg ccggctcaac tggcacccat taaacctaat aactaaccat
      241 cctcatgagt ttctagctct gaattatcaa atctgcaaag aaaacaacat ccgtccactt
      301 ttacactcca gtggaagagg tggtccctcg cggcagggct gcgcagtctc gccatctgga
      361 gaataaatcg agtgtgaagt acagtatagt ttgggaccaa gctccgtggc ggcagcccag
      421 cagttagttc attaggccca aacttgcagg gattagtgcg gtatcagctc tactgtcgga
      481 tgggatcagg caggcagagc gcgaggctcg gggggtggca gcaaagaagg gcttactggt
      541 aaaaccacag gtataagggc acctaaatag gtgcttttgg ttttggaaac aacttcccat
      601 catcagtacc tttcca
//
LOCUS       KCOD01002816             756 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 313455pyr ultra-conserved element
            locus uce-4416, sequence.
ACCESSION   KCOD01002816
VERSION     KCOD01002816.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 756)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 756)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..756
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="313455pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>756
                     /note="ultra-conserved element locus uce-4416"
BASE COUNT          240 a          151 c          149 g          216 t
ORIGIN      
        1 gtatgcaaaa taaatcacta tgatctgtct gaaatagatg attttttctc agagtgcaaa
       61 tagagagaaa aatcccatac taaaagtcag ggattctgat tctttatttt gcttctgcct
      121 cggatatatc agtcttacct gaaaagatct actgcaggcg cctcttgcca tgccagtatg
      181 ggtgtgcagc agacaaaaga cataccagaa aggggaagac agatatgcca cttaaattaa
      241 ataggaaatg aattggccag caagttggca tgtctgctga gacaaatcat agacaacatg
      301 tctctcaaca acagaactta tttgttttct cttgccaaca gattcatcac tgcccaggca
      361 aaacaggcaa aatacattag tgtcatggta aactgataaa gagaagtgct tcaatctagc
      421 atcctcaatg gcgaaagtct tagggctgta ttgatctgtg ttatataaat cttgttttct
      481 gtctgcagaa gtgaatcagg aatgaccctt aaggttaaca aacattgtaa tgtctttcag
      541 ctggggcaga tgcctatgtg ctccacacat tgtatttggt caagtcccat cttgtcattt
      601 gactgccaag gagcttaact aattgctggc aatcataaga cagtttgatg gaagcaaaga
      661 attcctacaa ttgttgcccc tctttttttt tctcagcctt aacaagcact caaagccatg
      721 tagcggaaaa caatcaacac tgaattagtc agcagg
//
LOCUS       KCOD01002817             559 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 313567pyr ultra-conserved element
            locus uce-6441, sequence.
ACCESSION   KCOD01002817
VERSION     KCOD01002817.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 559)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 559)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..559
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="313567pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>559
                     /note="ultra-conserved element locus uce-6441"
BASE COUNT          140 a          101 c          109 g          209 t
ORIGIN      
        1 cagagtacat gtaatactac acaaggaaat aaagttaatt ttcttgaagt agggtatata
       61 aatggacttc aatgaaaagt ctttttccta agccacattt gctaaatgca gacttctgca
      121 aggtcagcag ttatactgga gttgaggaga aatggcttca gtggctttaa ctttaccagt
      181 gcccttgatg aggtgcagag ttgtcagtat tctcgtaaaa ttcctcagcg atggcttctt
      241 ctgttctctt tatttcctta agtgaacatc tgtctaattg ttcacctcca ttgctttagt
      301 gctttcctca tgctttctct gtttccagac aataaacttt attttcttca taagaattca
      361 gtctacgcaa gggtattagg cagcttgttt gcacctttta atttctggaa gttttccaga
      421 agggcttttt gctgtagttc caatgggttc atcagtgaat catgtaacat aatgcagcat
      481 tgtgtttggg tttttatccg ttaccttctg tttataaaca tctgcttgga aattttcttt
      541 ttgcatgtgg catatgggt
//
LOCUS       KCOD01002818             513 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 313679pyr ultra-conserved element
            locus uce-510, sequence.
ACCESSION   KCOD01002818
VERSION     KCOD01002818.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 513)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 513)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..513
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="313679pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>513
                     /note="ultra-conserved element locus uce-510"
BASE COUNT          145 a           84 c          108 g          176 t
ORIGIN      
        1 agagagtcct ttccatttat ttatgtattt ctttgcttga ttttatttgt ttaagtttcc
       61 tgccacttac ctttgcattt gcatttccta ttgattggca atttttaaac tgtttattgt
      121 gctcttttgt ttagctgttc aagagctaaa acaaaagcca ccaggccctg tgagggacac
      181 atttgcatgc ggcgagcgtt gcccaaggaa aaagtaattg ctaatgcata tttatgtggc
      241 acaaatttgc catttgttta tgcataaaat tatcaatagt gcagggcggc ccagccgtag
      301 aaaatggtga cctttttagc ttaataaaga gaaatcagct gttattgtga agagatcagc
      361 catttattct gtgttgaggg acactgtcgg gaaaatgtag attggtgccg gcaatatcat
      421 taaatggaag gccagtgacc ctttcggtat agtctattat actttatcta ataggggata
      481 aatgactctg gttggcaaat agatttaaaa aaa
//
LOCUS       KCOD01002819             551 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 313792pyr ultra-conserved element
            locus uce-4646, sequence.
ACCESSION   KCOD01002819
VERSION     KCOD01002819.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 551)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 551)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..551
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="313792pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>551
                     /note="ultra-conserved element locus uce-4646"
BASE COUNT          171 a           98 c          101 g          181 t
ORIGIN      
        1 ttaaatgaat ttgaagattc acattgcttg tccactttgg atttagatta aaaaatcaca
       61 atcagaaata cacttacttc ttgttaaaca tctctgttgc agtatattga agaatgagct
      121 atgtattttg gagtgactag gaccatgaca gggaaacttc aaatggaact tggtggacct
      181 gtagatttgg aaataagtcc agaaggctga gcttaatata acatgtggca ggtggcctgc
      241 atttgcctgg agaattcctc tagggcaaga cagctcagca aacacataaa tccttttttc
      301 tgtgttatct agtagcacac ttagttgcca tgggaattat atttatgcag cagatcctct
      361 gcagttcagt ttgtgcctaa agtttaactg tacagctgtt accgtaaata ctacatggca
      421 atattttcaa aacatagcac ctttgaacaa atctattatt gaaaaatacc attttgatta
      481 cactaggatc atgtttcaag cttcataagt tgatttaaac tgtgcctcct gtacaggtct
      541 tcctaatatt t
//
LOCUS       KCOD01002820             192 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 313896pyr ultra-conserved element
            locus uce-2194, sequence.
ACCESSION   KCOD01002820
VERSION     KCOD01002820.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 192)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 192)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..192
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="313896pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>192
                     /note="ultra-conserved element locus uce-2194"
BASE COUNT           68 a           29 c           35 g           60 t
ORIGIN      
        1 tcacagaaca agtgcatctt gcactcatca acactgttgt ttagtaacaa tgttactttg
       61 aaaaaaagaa ttccctaaac ttcttcctat taaagaataa tgttaattgg ttagtgtgta
      121 tagaagaagg ttatatggcc cattgacttt atatagattg aaatgctaag cagggctaag
      181 tagaagcatc ag
//
LOCUS       KCOD01002821             428 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 314003pyr ultra-conserved element
            locus uce-101, sequence.
ACCESSION   KCOD01002821
VERSION     KCOD01002821.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 428)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 428)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..428
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="314003pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>428
                     /note="ultra-conserved element locus uce-101"
BASE COUNT          142 a           67 c           99 g          120 t
ORIGIN      
        1 aattgtctgg gctaaattgc aattaggcag ccctgagaga ggctggcacc agttaacttg
       61 ggatattgga gtgaaaaggc ccgtaatcag ccttcggtca tgtagaacaa tgcataaaat
      121 taaattgaca ttaatgaata attgtgtaat gaaaatggaa gaggagagtt aattgcatgt
      181 tacagtgagt gtaatgccta gataaccttg catttaatgc tattcttagc cctgctgcca
      241 agacttctac agagcctctc tctgcaggaa gtcattaaag ctgtgagtag ataatgcagg
      301 ctcagtgaaa cctaagtggc aacaatataa caagagtttc tttcagacct tagtgttttc
      361 agaaaaaaag ggtgtgttga ggtaatttgt acacatcgga atgaaaacaa gagaaatcta
      421 tttgtagt
//
LOCUS       KCOD01002822             371 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 314105pyr ultra-conserved element
            locus uce-383, sequence.
ACCESSION   KCOD01002822
VERSION     KCOD01002822.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 371)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 371)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..371
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="314105pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>371
                     /note="ultra-conserved element locus uce-383"
BASE COUNT          121 a           69 c           68 g          113 t
ORIGIN      
        1 caacatgccc ttgtagacat tccagtgggg ctataaaatg atcgatttac tttaattttc
       61 tactgaatcc tgaaaaaatg gctatcagta acctatccct tcatcatggc atgctgattc
      121 actctgtgta ttaaatttac tggcaaggag caagacgtta acaaaaagta acagataatg
      181 tgaacatttc atgcataatc tgtaatatga gatatgtatt aatagggaaa ttatgatgca
      241 ttcaattatt ctgaaatgcc ttccagagat gttttgattt ggctgcgctc tgatagtagc
      301 agcacagcag ggagcatctc aagtgatgaa taacctaatc tcctaatctc aaaatgggca
      361 ctattcacag c
//
LOCUS       KCOD01002823             862 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 314216pyr ultra-conserved element
            locus uce-492, sequence.
ACCESSION   KCOD01002823
VERSION     KCOD01002823.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 862)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 862)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..862
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="314216pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>862
                     /note="ultra-conserved element locus uce-492"
BASE COUNT          266 a          197 c          170 g          229 t
ORIGIN      
        1 gctgtgactt ctgaaccaaa gatgtcatct cgggtatgcc acagatgatg ctctcctatt
       61 gacagtctcg ctgatgtgca aaggacagat gcgcctcaac ttgccaagtt aaagccaata
      121 aatccatagc tttatatcag gccagctgat atacggcccc ctgccttttg tcatcacagg
      181 cattcacttc ccctggcccc cagaaagagg ggtgcattaa tcaaacatca acaaagaaca
      241 cttatcaaac actggccgtg aggacgtcca ggcctccaac aagatgacag ctaaagtgtg
      301 cactggggct gtaattacta cgcagaaagt tgtttcaatg ctagaaaaga taataaatga
      361 atgaaaattt atggcaggga atctaagtag caaggaaaca gaagcaggga gactggtgtt
      421 tctcccaaaa ggccaacttg catcataatt gccatgcagt tgcaagggtc cttacagata
      481 attgaccaga aaatgattaa gtcatcatca aatcgcttct gcttgcaaga gttcaaacat
      541 gtacttaacc tatccaagaa ttatattttc actctgtgtg tctgctctgt ctctattcag
      601 ccttgcgggg aacctgatta aaaagacaac tgaaggaccc ccgttatctg atcttctggt
      661 tgccgatttc aatagaactt aaacccatta cgatttgctg aacttggagt tctttccatt
      721 ttatctcagc agtaaaatac actgtccaaa tttccagaca ctgagataag gactacaggc
      781 ccccgtgacg gcttactgtt cctttttaat tcttttagaa taagaaacaa aacattacaa
      841 aatgatagca ggctgtgcac tg
//
LOCUS       KCOD01002824             607 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 314327pyr ultra-conserved element
            locus uce-7054, sequence.
ACCESSION   KCOD01002824
VERSION     KCOD01002824.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 607)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 607)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..607
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="314327pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>607
                     /note="ultra-conserved element locus uce-7054"
BASE COUNT          157 a           98 c          135 g          217 t
ORIGIN      
        1 aggtcggttt ccaaaattgc agctgtgttt ttctcttccg atttacaaaa ggttttgcag
       61 agagttgaga atcggatagg tttgccacat cgatctgagg gctgtttgcc taggcatagg
      121 gtttcagtgt atggctggca gtaaggcaat aggcagcaat ttttttgtgc tcagctgcta
      181 catatgacag aggatatttc attcggctgt cagaatgtta ttaataaaac atggggtgcg
      241 aagagggcca ctatttcccc tttcaatcac tatagcattt acaatgaaaa ttttatgcag
      301 tgtgtaattt tcagttaatg cttgacactt aaaatgtcgg tagctgcatt ttgtatggtt
      361 cctgaagggt taattgtatc atgttccctg cataaaagct ctgcttatca aaagtgaata
      421 gaagagtgta tgcaaatgtg tgtctgtgac cttttgcctt tccagggtta atttatatgg
      481 tcattaaaga ttttatgaaa ttgagcggcc tggtgctttg aatcccattt taccttcacc
      541 tcctaattta tataattcct acctgaacag ggaaatatga tttttatttt tgtgtgtgtg
      601 ttgttga
//
LOCUS       KCOD01002825             537 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 314434pyr ultra-conserved element
            locus uce-7420, sequence.
ACCESSION   KCOD01002825
VERSION     KCOD01002825.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 537)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="314434pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>537
                     /note="ultra-conserved element locus uce-7420"
BASE COUNT          176 a           90 c           92 g          179 t
ORIGIN      
        1 aaaagaaagg gaaggcaaaa aggggacaag gattcaaatt tggcttcagc ccctcctttt
       61 ttctctttgt tttctgcaac actgttttaa ttttagaaag aaattctaaa ttgacattta
      121 aatggtggca gggcaattct cattctctgc cttgtgaaac ggtctctgaa atgtacaatt
      181 atgctgtcat ctttagcact ccacattgga cagagtttaa ttattaatgt gtttccctca
      241 gagaatgact cgatcatgtc acaactctag acaaatacag ctaatgcaaa atcataaaat
      301 attcacttga atactgctga actgacagga aattaattct atgaacactt ttgatattac
      361 cagaaaatta gtttcaaacg cataagactg aaataaatgt gttcataatt tgctcaaggg
      421 taacgctcat cttgcaatca gttggtgtct ttttataaat gttacaagta ttcaacatgg
      481 ctttatgatg aagaggacag ttaatgtaat gtattatttg tagacagtat ttccctt
//
LOCUS       KCOD01002826             595 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 314540pyr ultra-conserved element
            locus uce-2253, sequence.
ACCESSION   KCOD01002826
VERSION     KCOD01002826.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 595)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 595)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..595
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="314540pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>595
                     /note="ultra-conserved element locus uce-2253"
BASE COUNT          182 a          130 c           91 g          192 t
ORIGIN      
        1 acacaaacta ttctgaagtg caatagatta gaagcacttt gacaaacaaa agagaactga
       61 aactttcatg ccactttcgt tcaattttgt actatcagca caaaataaaa gtacgtatgt
      121 gagagggaaa tcataaattc catgccttcc atctaaagaa gcagctaatt cttacccccg
      181 tttcataaac actggcatgt caaaatgatc agaagtgtgg ttaacatatg ttatattaat
      241 ccactgtatc tacattttgc tatttctcga aggattgggt cattatatat gcagagaagg
      301 gaaatggctt tatgacctct gctttctcca ttgcgcgttc tcctttcagc ccccagctat
      361 caatcaagtt tccattttgt ttcatggcag cagacatccc aaacactctt attagtactt
      421 tgacccttaa ccccacacta aacctaagca gaagtgcaag cagtagccta ttatatattg
      481 tttataattg tatttgcatt tgggtttgtc tataactgta tttttgtccg acagttcata
      541 catgcccaac gcttgctcat ccaatttatg aaatactcat ctatctacta cagtc
//
LOCUS       KCOD01002827             328 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 314647pyr ultra-conserved element
            locus uce-2263, sequence.
ACCESSION   KCOD01002827
VERSION     KCOD01002827.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 328)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 328)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..328
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="314647pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>328
                     /note="ultra-conserved element locus uce-2263"
BASE COUNT          104 a           77 c           51 g           96 t
ORIGIN      
        1 taaagtagtt gtcaactgca gctacagtac ttcaccttct gtcactccca ggtatcaagg
       61 gggctgattc aatcactctc ttgtcagact acctttcttc tcctgaatac ccaaatccct
      121 aaacacaaca aaatataaat gaatgaaaag tgctaatgat gcatcattac caagaggtat
      181 caagtttttt aaggtccttt gctgactaaa ttttaaatta gcacaattat tcagagcatt
      241 ccccaaggca ccattcatta tgcttagcca ctgagttgag gcacactgca aacgaaatat
      301 atattagtgt ccacagcata ctgcctgt
//
LOCUS       KCOD01002828             552 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 314749pyr ultra-conserved element
            locus uce-5230, sequence.
ACCESSION   KCOD01002828
VERSION     KCOD01002828.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 552)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 552)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..552
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="314749pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>552
                     /note="ultra-conserved element locus uce-5230"
BASE COUNT          118 a          127 c          152 g          155 t
ORIGIN      
        1 gaagagcaga tgttgcatcc tccatctgtg ctgtcctgca tgctgtgtcc tcagtgtcca
       61 tgctgggagc tggtgtgagc agtcagttca agccaaccat tttgcccttc gtcatggcca
      121 ctcctcagat gtttgtacag gtgcgccatg atgcagaagg gtccaccacc ttgcgaggag
      181 cagcgaggct gtgtgcagct gcccgcagcg ccgtgcggct ggaagggggg ccgttacact
      241 gtaagagagt gagtagcagg tctcacagtg aaccggtctc ttttcctgct gtgtcatgca
      301 ccctggatga ctccagagtc tggtgtgtgg agtaggaatt gtggttgcat ttcaagggaa
      361 taaatgattc tggtgtttga gattaagttg ctatctgttt ctttagtgca taccttccct
      421 catagggtgt ctcagtaact ccatttgttt ttcgagaatg ccaggtagga cttcatcatt
      481 cgatctcagt ttggcagaaa ccctttagaa tggcaaagca gattccctgc aaaagccttg
      541 atatgaaagt ca
//
LOCUS       KCOD01002829             530 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 314858pyr ultra-conserved element
            locus uce-6865, sequence.
ACCESSION   KCOD01002829
VERSION     KCOD01002829.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 530)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 530)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="314858pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>530
                     /note="ultra-conserved element locus uce-6865"
BASE COUNT          136 a           85 c          131 g          178 t
ORIGIN      
        1 tgtcaggcat gaggtaattt ctgaaaggct cggaagtagt cgtgactttt gcctgtcctc
       61 aaggtgcagt tctttaacaa ggtgcctctg agaattttag cttttgaaag cagtggggaa
      121 tgtacaaatt gtgctttaat tacttggctt gtttttttag acaggtgccc tagttcacag
      181 ttatcgggga acaggaggga tttttgaggt ttgctggaat gcagcaggag acaaagttgg
      241 agcaagtgct tcagatggtt cagtaagtgt tgcttgactt ggttgattaa taacaaacat
      301 tttaaccaac aatggagaca aaatttcctt ctctagctga aggttgagta gctcacctgt
      361 aaccatgctg tgttaaggag aatatcgaaa acctcagaag gtaactccaa tttatgtttt
      421 ctgttcctgc tggggtttac tgtgtcagtg tgttcagtgt ggctggtctg gaaacaaatt
      481 tgtttttctt tctctgccca aaatgctcag tgtaattatt ataatgtatg
//
LOCUS       KCOD01002830             533 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 314967pyr ultra-conserved element
            locus uce-2326, sequence.
ACCESSION   KCOD01002830
VERSION     KCOD01002830.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 533)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 533)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..533
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="314967pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>533
                     /note="ultra-conserved element locus uce-2326"
BASE COUNT          177 a           94 c          101 g          161 t
ORIGIN      
        1 tgtatcaact tcttctatca cgtgccacaa acaaatgtca tgtgaagtta gtgaaagaaa
       61 aaccctgagt tagcagagtt ttaaataata aaaagctata gtagcatgta tccccatagg
      121 aaaggacacc ctcacacaag acagattagg gtacttgtaa tgctaatttg cacatgggat
      181 ggacatcaca cacacacaaa aattaatgtg gccccagtgt cccagagaat acatcgaagg
      241 tgctgtgagc cggctgctcc acttgcagat tttatcactt ctgaattgca ttttaatagt
      301 acatttttct tttcttcaga catgaaagaa aattggcttt ctcaggggat tggatagctg
      361 agaagacaag gctttaggga tttgcccata tatgcacaga atttagttaa gccacagcat
      421 tcataattta atatgaatac catatctgta aaatttatac atagaatgga gtaaaataga
      481 gttttccctt taattctaga cagaggtttt gattttactg tggattagtt atc
//
LOCUS       KCOD01002831             412 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 315072pyr ultra-conserved element
            locus uce-4905, sequence.
ACCESSION   KCOD01002831
VERSION     KCOD01002831.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 412)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 412)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..412
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="315072pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>412
                     /note="ultra-conserved element locus uce-4905"
BASE COUNT          138 a           74 c           62 g          138 t
ORIGIN      
        1 aattgaacaa tttccatgcc catgcacaga aatgtatacc aagaaacaag tttgcattta
       61 agtgtcactt cccacagaaa aaatatccca ttagtaaaca tggaccttaa aaagtgattt
      121 atttcaatag acctgtacac ttcagcttgt gtacaaatta cacatccctg gttaaaaaga
      181 agatgcacat aatgtatgga atgaactgtt tcaatccatt ccttgctgct ataattttta
      241 tatctcattt tacctctgta attaagacag gtctggtagg tatttaaatt agcctggctt
      301 tcatctctat cacacattca tttcaaaact tttatgaata tttaatagag gttttataat
      361 tcatggtgat gtgatgaaca gccttttggc cgttaagtca attgacagaa ag
//
LOCUS       KCOD01002832             473 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 315180pyr ultra-conserved element
            locus uce-6809, sequence.
ACCESSION   KCOD01002832
VERSION     KCOD01002832.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 473)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 473)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..473
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="315180pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>473
                     /note="ultra-conserved element locus uce-6809"
BASE COUNT          160 a           86 c           80 g          147 t
ORIGIN      
        1 ttccacttga gagaaacctg acgcaacctt agtgaacaga atggtaattt tcataaaatg
       61 cacagtcaaa ctggtaaagg ctaaattctc caatttttac ttcaatttga aataaaataa
      121 tgtgaaatac agtcattgtg agtttcgcca cattttacag gtactaacac cagtaagtaa
      181 tgtatatgaa gctggcaatt cagaactgct tgtctttcat aggatttctt atggctattt
      241 acattttcac tcagtgaaaa tcaattacct tcctgcaata agcctcattt gctacctttg
      301 agtataatag aaacaccatt aggatgatga cattacccaa aagaagggca ccacacagtt
      361 ggtagacata aattaaggac cctttcacat atgcattaga aatactgctg tgactgaaat
      421 atgcataaaa tctgtatcta ttagagctat tagcgtgtgc cggtgatgat ttt
//
LOCUS       KCOD01002833             843 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 315290pyr ultra-conserved element
            locus uce-1667, sequence.
ACCESSION   KCOD01002833
VERSION     KCOD01002833.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 843)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 843)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..843
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="315290pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>843
                     /note="ultra-conserved element locus uce-1667"
BASE COUNT          269 a          147 c          142 g          285 t
ORIGIN      
        1 aaataatgtc tggccactgg gaagaaatat atttatgaac aataaaaact gacgtattaa
       61 ttatttcatt cagtagacaa gtatcatcat aaagaccagg cttatacaac atagcaggca
      121 tcacagcaaa aatcataaat actgtacttc tgtttagctt gacagtggca ggtaatagac
      181 tatcatttct gttcccttag ctactgtatc cttttctatc catcattctt tattgttatt
      241 atcacactta tttcagcatt cttatatcag cagcatttag tgacattgcg aaaacatggt
      301 tcagaaaggc tgaactttta attgttatga gaaataagtt agcttaatta ttctatgtaa
      361 gtagaaaaga tgtggtttgt tcttcttcct aagtccttcc ttcctaatcg caattcaaca
      421 ccctttttaa gcattgctat gtatgaactt catgctgcta gacaaataaa ttctttggaa
      481 aaatgcacat ttttatttgg aaataatgcc atctctttgt tagatttgca gcaatcctat
      541 tttgcctcta ctgtttttaa gtcgaaaatg aaaaattatt tagaagatgt ttgtgcatca
      601 tattgtgctg aatggtatgt aggtcagcat gctgcaccat agcagataag gcacagtgaa
      661 caagtgttct atgtacttac aagcaaatat cagtcataat agaagtagac agatctacaa
      721 gagcgttttg gcttaggaaa tgtttcttgt cattagcatt taaaaaaagc tatgagattc
      781 aggcctatca gcaccgattc acagcaaagc ctggcttgca caggttgtta tctgttcagt
      841 aca
//
LOCUS       KCOD01002834             688 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 315401pyr ultra-conserved element
            locus uce-802, sequence.
ACCESSION   KCOD01002834
VERSION     KCOD01002834.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 688)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="315401pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>688
                     /note="ultra-conserved element locus uce-802"
BASE COUNT          217 a          135 c          109 g          227 t
ORIGIN      
        1 taaagctttg gttttgattt ttcaaacttt tttctcaaac ccttgctcat ccataatctt
       61 taaaagctca gttgatgcca tgcagagtac aggcttattt ctttgctgaa ctaatctaga
      121 cactgtctag tgttgagtac agttgtctga ttcaaatctt ctgttacaaa gcagatgaca
      181 tctagctaga tgtcatgaga agagactaac aatgacaatt cacttatccc ttagaaagaa
      241 tcaattctcc cacaatgcat ctgtcagaga actctcactc agtaaaagca atttttctag
      301 ctgtctgaca ctgtaattgc tcttaaattt tcaatgaacg ttttacaaga actcccctga
      361 accatgatga aaaacttaac tttttctaaa aatgagaggc tgacaggatg aaagaggtct
      421 ttctatttaa agctttgctt gcttcagtag gaattctttc atatcatcaa caagctgttg
      481 aatagaggat agattacttt ccatttattt catcaatcag attaaaggct ctccttcaca
      541 atgcccttta aacaagagct gtttatgatg tcctcccagg ttctacttta atgtagtatt
      601 aaatcaccct gagcagagag gcaggcaaag catataaata tgatgaatat ctgacaacat
      661 ttaagcattg catacattca ggtcattt
//
LOCUS       KCOD01002835             604 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 315512pyr ultra-conserved element
            locus uce-5278, sequence.
ACCESSION   KCOD01002835
VERSION     KCOD01002835.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 604)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 604)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..604
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="315512pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>604
                     /note="ultra-conserved element locus uce-5278"
BASE COUNT          208 a          113 c           92 g          191 t
ORIGIN      
        1 tgcttttcca aaacatgaaa actatgcttt aaattagatg cattttactg ttgctaaggt
       61 atgagcatga aaagacatgc catttttcac agctaaatgt atgcaggtgt taatgaactt
      121 atttaaaaaa tggttctgag caccgaaaag ggtaaacaca taataactct gctgtttaca
      181 atggtaaaca attgcaagtc ataaccacaa tattgttcct agttatttca gctataactt
      241 gcaaggcttc atagccagac aaaccagatg aaatatgttg ctgcaggtct gctctgatgg
      301 atccctctga aatatccaca ttattgcttt tattttatta tgtaccacac ttcataactg
      361 tacacagcag actacaataa aaactgcact acactccttt aagtacttat taaataggtc
      421 aaaaagttac cataacaaat aacttgctct actcagagtc cattaataac acatcttgtt
      481 gggattctaa aacaaataag aagtgtctgt tatttgatgc tgctgcctaa cagtttgtgc
      541 ttaaaatact tatttgtcac agcattactc agtctaaaat atcagcattg acacaagatg
      601 ggat
//
LOCUS       KCOD01002836             510 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 315619pyr ultra-conserved element
            locus uce-6696, sequence.
ACCESSION   KCOD01002836
VERSION     KCOD01002836.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 510)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 510)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..510
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="315619pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>510
                     /note="ultra-conserved element locus uce-6696"
BASE COUNT          160 a           89 c           97 g          164 t
ORIGIN      
        1 ggagccgaag catcgtttaa aatattttac aaatgttgct tagcttaatt gattaagcca
       61 caaaagtttt ctgcttttaa ataccatact tatacctttc aacaatcatt ttaatatata
      121 gtcaatggct ctttgtagcg ggaacaaaaa agaactatcc acagtttttc aatagacttt
      181 gagctgggga aagacaggtt aatcgagggt tgcatctaga aaacaaccaa gtgttgtatg
      241 tttgcactga atccaaatgt ctgcattttt ctaactaaat caaagggagt gttatttctt
      301 tttctgctca ctcatctgaa ggtaagtaaa ttttctctgg cgatcaaaag cctggtcagc
      361 aacaaagaca ccgcctgctt tttccaccgt cctggtgtgg caagttgagg aatttcaata
      421 actgtgacaa gggtgactga tttgtgaact agaaaaggtt tgcatgtcag aaaatttaca
      481 ttgctcctat cgaggattta aaatgaattt
//
LOCUS       KCOD01002837             827 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 315732pyr ultra-conserved element
            locus uce-3394, sequence.
ACCESSION   KCOD01002837
VERSION     KCOD01002837.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 827)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 827)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..827
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="315732pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>827
                     /note="ultra-conserved element locus uce-3394"
BASE COUNT          257 a          146 c          159 g          265 t
ORIGIN      
        1 ctatctaata tgtctgccct aagggtctaa caaatacaag tgggaaaata taattaatat
       61 agaattataa aaccaactgc aaaatgtatt ttctttattt cctcatgata actggaaaga
      121 aaagcaatgg gtcgactgac attccttgtt taatgcagct tacttagtga ctggcataat
      181 gataagtgat ggtaatttac cttaaaaacc ttaatgagtg gatcattact atagagaaat
      241 gggaagaaaa ctttaatccc acagaggcag agctccatgg ttggctgtgc aataaccaga
      301 cagaactctg aatgagattc ccaagcttct gttccctaga taaaattttc tctcactcca
      361 cttttgcaaa ggtaatgagg aggtaatgag gcttgacttg aattttttca gcacttgatt
      421 cccttcattc cccagcaggt tcccatagga tagagtaaga tgttggattt atataaaagc
      481 tgtgctgata gataggtgga ggaggtgagc catgttattt ggttttggat tctgtctgta
      541 cgagaagggg ttcagataaa tttcaagttc tttcaacact gtcaattcac tctgatagct
      601 tccacagaat aagacaattt gacgacatgc agaccttgtc agggttgttg actgtttatt
      661 ttgtcacttt actgatacta aacactgacc tttctgtgcc accttttctt cctcccattt
      721 ttcactaact taatgacaca tctgagtaaa taataaaacc caaaaaggta ggcagaaatg
      781 ttgtattaga tcattagctt aatttgagct gaaaggtctt tgttgta
//
LOCUS       KCOD01002838             617 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 315841pyr ultra-conserved element
            locus uce-7331, sequence.
ACCESSION   KCOD01002838
VERSION     KCOD01002838.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 617)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 617)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="315841pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>617
                     /note="ultra-conserved element locus uce-7331"
BASE COUNT          203 a          119 c          105 g          190 t
ORIGIN      
        1 atgtatttga tggaagcaag agaaagccat tgctgttatt gttacattgc atgatgtaaa
       61 tatattcttc attttatcat cctcaaacaa gatatttttg tgcttaacgt ttactttaag
      121 ttctctgagt tgggttatca accaatccag agaatatcat gaattgtccc gagtctttca
      181 cagtaaactt aaagtctaaa caataaaaac agataaatag aggaaatgtc aaactgaatt
      241 ctgggtaatg atcagatcag catgctttta tacaatttcc atcactttga attttaaatc
      301 accttttaaa gggcactaaa gcattcttgc aaattagtct gctctccaat taatgcaccc
      361 aacatgacaa taagaccagt ttcagcttgg ctaagcagac cagtcaacca ggaggatgtg
      421 acttgaggac ttggagagct tgtgcctcca ccttttttcc ctttctcttc acagcagctt
      481 aggtccaatt aggccagtta atctgcctaa aaccattgga aaggaaggat ttctctaata
      541 aagatgaagc atagtctgag aggacataca aattaagtct actcttttca aaagacagaa
      601 aattccaaga tttcccg
//
LOCUS       KCOD01002839             532 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 315951pyr ultra-conserved element
            locus uce-793, sequence.
ACCESSION   KCOD01002839
VERSION     KCOD01002839.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 532)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 532)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="315951pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>532
                     /note="ultra-conserved element locus uce-793"
BASE COUNT          177 a          121 c          115 g          119 t
ORIGIN      
        1 caagctaaac actaaacatc aacttgttct tacagggagg attcaaaccc taaatataat
       61 aaatggggga ttacgggttt ggagtgttag tgcaaaacaa cactggaaat aagtcagctt
      121 ttccagtcag atttcatcca catctgcagc ctccacacca tcatcaaaat gcaaccccca
      181 gccctgctgc ttttataaat aataacacag ctgccaatgg cagtagtgct gggtcagctt
      241 ggctctttcc tgctccagct gcccataata ttcaggatga gattctgggg tcagaaaaat
      301 ctaaaactca gcaacaggaa aagcaagagt ccctagaaaa acagcagctt tcccctggtc
      361 aaagtcagga agcaggcatg ctctctgaac ctgagaaagc taaaactgaa gaaaaccagg
      421 gcgataattc ttcagagaat ggcaatggga aggagaaaat aagaatagaa tcgccggttt
      481 taacaggatt tgattaccaa gaggcttcgg ggctcggtac ttcgacacag cc
//
LOCUS       KCOD01002840             730 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 316063pyr ultra-conserved element
            locus uce-6211, sequence.
ACCESSION   KCOD01002840
VERSION     KCOD01002840.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 730)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 730)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..730
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="316063pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>730
                     /note="ultra-conserved element locus uce-6211"
BASE COUNT          227 a          128 c          132 g          243 t
ORIGIN      
        1 ttttttgtta tatgctttgg tttggcgcat atttaaatgt gttaaacaag tgcaagtact
       61 aaactggaaa aattcatgtt acagagtaat aaacgactgt ttgtgagaat cacaattata
      121 tgtcacaaac tctacaattg aaatcatgga gttcattttt tattataatt tttcacccat
      181 tttggttcaa gtaacattct cacagaatac aggttttgta gtgatatgat gtttcctagc
      241 tgtaggcttg gcctgtccct tctactggct gtaatttact ttttggtctc tgtcgccttg
      301 agcttgcctt ctgactagtt tgttgaatga tgtgctaatc cattatattt ttcagacaag
      361 tgtatcgacc actataaaca gactggaggg cacaaaccta aatgaaagct atacttcctt
      421 gaatcattta aaaagctcct gcagtggtgg cagtgcaaaa taacttttct ctgtacatta
      481 aataaagagg gcaatttcaa taaataaaat taaggttgtg gggaatgtga gcacatggtg
      541 catttcacat gtttagttat aggaagaaga gacagataat gttagtcagc cacttgagaa
      601 cgtgcttcta gatgataaat ttgaaactga gccccaagcc ctgcattact tgccatttcc
      661 cattgtccag acactcccac aacacagaag tcatgcacta tattgaaaca tttttataca
      721 aataaagaat
//
LOCUS       KCOD01002841             612 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 316173pyr ultra-conserved element
            locus uce-541, sequence.
ACCESSION   KCOD01002841
VERSION     KCOD01002841.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 612)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 612)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="316173pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>612
                     /note="ultra-conserved element locus uce-541"
BASE COUNT          201 a          123 c          120 g          168 t
ORIGIN      
        1 agagctgcat tatagaatgg ttatttttta aaagatcctt tattttttca tgagaaaaat
       61 gatcaaactg ataagccaag agggaaaagt tggagcagct gaagtccttt ttggaaaatt
      121 tcaggtaaat actatatttg gttggatctg gattttccag cgtccaagtg cagtttgtga
      181 agtttttagg aaacatttca cttacagaat acgatccata aatgaccccc ttcaccaacg
      241 tggaacacca gaagtcttgg gcagcattaa atccaaacat aaccagtaga taggtggaaa
      301 atatataaat cagcaaatta cgaacagcct tcatcctatg tcatttggcc tgcaggagat
      361 gaaatgaaat aaaaatgcaa gtagaattct tcacgcatag aaaaccaaac tccttacaat
      421 tttcgagcca gctgttttca agcttgcagt tagagcccct ttcagaaaga agggcaggta
      481 atttttattt tataacgcaa gggcctgggt tgccgctgtg tgcacagcgc catcacgtgg
      541 ccatcgccac agacacgtcc tccacagaca aaactcaaca tctattagat tattaatagg
      601 aatgtcctcg cc
//
LOCUS       KCOD01002842             363 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 316279pyr ultra-conserved element
            locus uce-764, sequence.
ACCESSION   KCOD01002842
VERSION     KCOD01002842.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 363)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 363)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..363
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="316279pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>363
                     /note="ultra-conserved element locus uce-764"
BASE COUNT          111 a           76 c           72 g          104 t
ORIGIN      
        1 ttttctggga aatcgggtgc agccacacag cgaaacactt cggtcacttg gactggagtc
       61 ttcaacacgc aatgactttt aacaggcaac atctgacagt accaaagccc tttgcagccc
      121 tgggtgaaat tatgataaca agagaaaaaa gctattactg ccaccatgct ttcattatgc
      181 aaatgatatt aagataggct gtgcagatcg cctgtggcta tgctataatc tccatgcagt
      241 gattataatg tgtcaaactt agtcattttg attatgacat gttaattaca tgccatcctc
      301 atgcagacat gaatattact cgcagtcaaa caaaacacaa attgggggca ttggtttttt
      361 cgt
//
LOCUS       KCOD01002843             611 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 316389pyr ultra-conserved element
            locus uce-686, sequence.
ACCESSION   KCOD01002843
VERSION     KCOD01002843.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 611)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 611)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..611
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="316389pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>611
                     /note="ultra-conserved element locus uce-686"
BASE COUNT          222 a          117 c          129 g          143 t
ORIGIN      
        1 ctggttagaa ataacaagca aagtaatggt gcagttatag ctccattgga agctgcccag
       61 gaacaagaag cacttaggac tggtgtcaga gacaaaataa aatttttcta tttagcacca
      121 gtatccacct gggtaaggca gcaaaaatgt gcaaataaca aaagacatca gaataacaaa
      181 taacggcaga cagtcactct ggacctattc tgaaacaaca gaatacactt taaaaagcag
      241 taaaaccaat aaaaatccag tcatcttgaa aaaggagagt ctttgctgca ataaaggcag
      301 tcaataaaga agctctctca tttaaacatc aaatgcacat tgttttgcaa cacctgttat
      361 tcagccataa tagctttctt aacctgtcat agtgtttaag ctgaggaaaa gaaatgggcc
      421 tccagctgtg cacttcggtg aagaaagtct gtgcaaaacg atattagttt aatgaaatgt
      481 gtacagattg taattgtggt aataagaggg caattcccag aggggcagta ggaaggcagt
      541 gagtgcaacc aagcagaaaa cagaagctgc aggctgatcc tgtgtatgga ccctcactcc
      601 ccactgtaca g
//
LOCUS       KCOD01002844             470 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 316496pyr ultra-conserved element
            locus uce-6736, sequence.
ACCESSION   KCOD01002844
VERSION     KCOD01002844.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 470)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 470)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..470
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="316496pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>470
                     /note="ultra-conserved element locus uce-6736"
BASE COUNT          169 a           80 c           77 g          144 t
ORIGIN      
        1 aatttgacac ctgttaattc aagcgttgca gtcataaaca tagcctgaac aaagtagctg
       61 gttatgatat caaataaagc cagcataaaa tcacaataaa aatccaagag attaagaaaa
      121 cctagttgaa atcagtgatt tagattagta ttgcactgag taaaagcaag caagattact
      181 tttcctcaac gatatatttc aaaatgtctt ttttaagcct tttcaaggag tgatttgaaa
      241 tatttactac cagacagtac ctaattttag gttttaagtg ctttaacagc tctatgaaat
      301 atgatcagca gctgcaatat agaagtatgc tgaataaacg ctccttatga gacctgctct
      361 accctgagtt cataaaatcc ctactttcaa gaaggaaaaa gataacacag ttaatggctg
      421 tgtcctagag catttaacag aaattccagg atttttttct gtggtaactt
//
LOCUS       KCOD01002845             563 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 316603pyr ultra-conserved element
            locus uce-211, sequence.
ACCESSION   KCOD01002845
VERSION     KCOD01002845.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 563)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 563)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..563
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="316603pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>563
                     /note="ultra-conserved element locus uce-211"
BASE COUNT          189 a           81 c           95 g          198 t
ORIGIN      
        1 tatctgaaac cttgtaaaac tctctcctga gataagtata aagtacatat gtacatatag
       61 tttgcttgtg ttttgattta ccaacagaat tgggaacaaa gtaatagctg tgcacattgt
      121 tgttcaatcc cttttgtcaa actgcagttt cattgctgga taaaaaaaga ttcattgtaa
      181 gagttatctg gtggtgttga tgaatagttg caattaatac attcccttaa ttagtctgat
      241 acccagaaga tgcacctggc aggtcatttt aatactacaa ttgatttatt gctgctagaa
      301 attattttac cagctatctt cagagagcac aattagagag gatttcttaa tgcattttca
      361 ctgaggaata aacataaaag gtctatgtaa ttcagaacaa agcagctata atgtactaat
      421 ggtttatgga ttttattaat attcagctaa cattagactc aattttagag aacagcaacc
      481 tattttctat atgaagtatc tatttttagt atgagagtgt tttattccaa aataaaacca
      541 tgatatttta aatcaggtat ggg
//
LOCUS       KCOD01002846             706 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 316713pyr ultra-conserved element
            locus uce-5228, sequence.
ACCESSION   KCOD01002846
VERSION     KCOD01002846.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 706)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 706)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..706
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="316713pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>706
                     /note="ultra-conserved element locus uce-5228"
BASE COUNT          239 a          161 c          138 g          168 t
ORIGIN      
        1 aaacctcaac acaaaccagc agctaaatca agagccaaag gaaggaacct ggtggcaatt
       61 ccatccaaga gaaatcactg aaacaaaccc attttgctca gaacagaaat ctcaaacatg
      121 gcaggttcat taggagtcat ccatcactgc gttcccactt ccatagcctg actgatactg
      181 agaagatgcc agtagcagag tcacagcaat ggcattgaca gggggatttc atggaggata
      241 gtccaaaccg aaacccgata aaaatggaga aaaataaaaa ggcaccaata taagccacaa
      301 catttatgaa tacgatatat tttaactctc tacatggagg aagccaacct gctccttttt
      361 gatcttcttc tttggcacaa cttcggtgga tttctcagac tcagagcggg ttcgaatcga
      421 tcttctctgt tgcttctttt ctacagaacc tgaagaagga aaaaggtttc cattacatga
      481 ttccttgtat ttccgaggaa caccaagatg tgcaacacca aaccaacaaa aggaacgaaa
      541 ccaagacttt gtcctctttt gaatgtttta tttttaaatt cagttccaag ctattgacca
      601 gctggtgctg tggctgcaga cacacattct gattccagag acagatcagc ttcagaaaac
      661 agacaacaga gtggaacaaa aggctggaac tcagcttagg gcaaac
//
LOCUS       KCOD01002847             676 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 316821pyr ultra-conserved element
            locus uce-1060, sequence.
ACCESSION   KCOD01002847
VERSION     KCOD01002847.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 676)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 676)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..676
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="316821pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>676
                     /note="ultra-conserved element locus uce-1060"
BASE COUNT          199 a          106 c          129 g          242 t
ORIGIN      
        1 agcagcagca ggagcctctc gtgagttttg ctttggactt ggatggcact gctattttaa
       61 atgtgtgagc atgtgtgtaa acttctctta aaattgcaga aagctgaaaa gataaccttg
      121 cagttgtaga atttctgtaa ggtgcatctt tttgattatc agtaacaagc ttttcctttt
      181 ttgacaggct ggtgaaaatt gcccctcaat attatgacat gagcaatttt ccacagtgtg
      241 aagcaaagag acagttggat cgcatcattg ccaaacttca gtccaaggaa tactcacagt
      301 actgaattta tgctttgaac tgaagttatt cagaggacag ctttaagaga tgaaaggatt
      361 caaagttcaa gttgtgctct tcactttggt tcaataatgg cctttatttg aaagcttttt
      421 aatttttctt tacagtaaat attccattct gatttcctaa attaaacatt tatgcctccc
      481 ttttgtgttg acactgtagc tcatactgga aaagctaatc aatgttttgc agtttattga
      541 aagtagttct atatataaca atgttataag catttcttta gaaatggttg aaaatgcttc
      601 taaaaatgtg attatcgacc atggtatgca tgatcgttgt aattgttgac attcctttta
      661 gaagttgtga aatgtt
//
LOCUS       KCOD01002848             259 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 316923pyr ultra-conserved element
            locus uce-1649, sequence.
ACCESSION   KCOD01002848
VERSION     KCOD01002848.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 259)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 259)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..259
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="316923pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>259
                     /note="ultra-conserved element locus uce-1649"
BASE COUNT           68 a           28 c           53 g          110 t
ORIGIN      
        1 ttttgcttat ttataggtgc tgtattttat tatctgattg ttaggaaggg atgaaagggg
       61 gcaaatattc tttagaggga tagactgccg gcagtattgg gtataattta caagatgtag
      121 ttgtcatact gtatattatt gattgaagac ttttttgacc gtattgtgta tcattgaact
      181 tttgtcttag gtcagcatct ttttgatgac actttaatgg tgcattcatt acatcttaag
      241 tttaattaat attactttt
//
LOCUS       KCOD01002849             489 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 317029pyr ultra-conserved element
            locus uce-1690, sequence.
ACCESSION   KCOD01002849
VERSION     KCOD01002849.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 489)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 489)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..489
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="317029pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>489
                     /note="ultra-conserved element locus uce-1690"
BASE COUNT          156 a           74 c           95 g          164 t
ORIGIN      
        1 aaattttatt taaagttcac agcagtctat gcagctagtg cagttttagg ttaagcatat
       61 tttatccata attgctatat ttggttctca agttattatt gtagttcctt ggggtacatt
      121 taaatccacc ttattgtaat agattatgga atatagtggc taatgtgtct aatgtaaaat
      181 aaatgactat aatgatttat gatccagcac ttcagtttta ttgaacataa ggatcattgt
      241 actaaaatgg atggcgtatt gctggtttag cataaaatac tgaataacat attcaaggga
      301 atgaatggat tggccagttc ataatattct gccccttcag ctgagaggtc tttaataagc
      361 aagagtgtca ttacacttga aaatgtatgt gtaggtaatc cattatccag aacaatgaca
      421 gtgatcggat gaaggtctta ttaaagaagg gccctcctta cagggaaata cagagcactt
      481 ccctgcctg
//
LOCUS       KCOD01002850             788 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 317136pyr ultra-conserved element
            locus uce-3861, sequence.
ACCESSION   KCOD01002850
VERSION     KCOD01002850.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 788)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 788)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..788
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="317136pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>788
                     /note="ultra-conserved element locus uce-3861"
BASE COUNT          287 a          178 c          152 g          171 t
ORIGIN      
        1 aacacaccca tgaggagtca tggcacttgt tttgtaccac tgctgttcag caaatatcac
       61 aaaaaagtcc actcaaagct aaggatgctt aaaatgtctt ctgtggatca attcatccat
      121 actacagcaa acgcacactc gttctcctca gaaaatacat gaataaatgt tactcttaaa
      181 aatggataaa gcacacgaag caccatctgt caatcttcag aacaaaacaa cgacacacac
      241 tcactacgaa tggactgcca gaagggctgc agttcggagg cactgttccc tctagattgg
      301 tgtccagcga cggcatcctt accttcggtg ggaattcctg ttgctattta cgtggccccg
      361 gcctgtgcag cctggtgtag gacacttaag aacattttca tgcatggcaa gaacttgaca
      421 aggagagtaa gagaaaacag cagagtatga aaacaaaaaa aaaatcaaat cccagtatat
      481 atgaaaccat tttaaaacaa agcaggattc attaacaacc agcattcctc aaaatacacg
      541 tgacacacat agccaataaa gcctgaggga agtaagtatt gtgacattaa cacagggcaa
      601 cagtgaaagt tatggaggct acagaaccta taaacaaatg catctctggt gcaacagtga
      661 agcagaagac gcccaacatc ttcttcatac aaaaccactg agcaaagatc agctcaacag
      721 tgaagggtga gctggcaacc atacaaaaca aaattacgga ctagaaaaat tctttcagga
      781 aacgtatg
//
LOCUS       KCOD01002851             891 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 317232pyr ultra-conserved element
            locus uce-4642, sequence.
ACCESSION   KCOD01002851
VERSION     KCOD01002851.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 891)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 891)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..891
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="317232pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>891
                     /note="ultra-conserved element locus uce-4642"
BASE COUNT          235 a          207 c          219 g          230 t
ORIGIN      
        1 aggctgtctt gacaaaagcc ctaaggaaca atgttaagtc aatcttaaga tatcttgttt
       61 atgttatttc acctcagagg gtcttaaaag ggcttgaagg acaccttcag cagcagtaat
      121 ggctggcagg gaagtagcag catgtgtccc ctttcctgcc ctgcctttta tttggtcaag
      181 gaagtcactt gcactttctt tcatcattcc tcctcctcct ctccctcccc catgtcctga
      241 ctccctgccc ggattcaaga gcttgaaggt ctgctggtgg tagccgtggt ggctgcaggg
      301 aggagggaaa aaaagcagag ggagtaaaat aagtgtcaag gaattcattg tctgttctcc
      361 acctgttgtt attctggtcc caatcaacct gctagccagg ctggagccag tggccatctg
      421 gaaacactgc tctgtttata aacttggcat gaagcagcac tcccgggccc tgacctccca
      481 cacaaatctg gaaacaatta gagcaagatg ataggcaggc aggcagggag aggaggggaa
      541 agagcgcgtg agagaggagg ctgcagagaa ggggaaaaac agacagagtg aaggggagca
      601 tggagaaggt ggcaaatgtt tctgagatgc aaatatttat gcccacctta aatgaccgct
      661 agctcattaa ttattgccct tgccaaaaca gcttcttttc cgtgaaggct aaggcgtacc
      721 tctttacctc ccccagcgac acaggttttc caaattatat tgtatgtttt accctgctaa
      781 aagtttgcct ttacgactct taggaaattg agttaggtcc acacgctcag acccatacgt
      841 gttctgtact tggtggtatt gaaaactgga gtccaaatat tgcagctcct a
//
LOCUS       KCOD01002852             755 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 317336pyr ultra-conserved element
            locus uce-6265, sequence.
ACCESSION   KCOD01002852
VERSION     KCOD01002852.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 755)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 755)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..755
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="317336pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>755
                     /note="ultra-conserved element locus uce-6265"
BASE COUNT          251 a          125 c          137 g          242 t
ORIGIN      
        1 ttaaagtgga cacaatctta ctcttaacag agttatgtca ttaaattgaa ggaggtctcc
       61 acaaagacat gattccagct ttcacaaagc tgaaatgttg tccagcagaa gtctttatgg
      121 aaagctgaag taaaaactaa ctcagagacc tgctcttgaa atgccatgtt caagagaaca
      181 taatggagca ctgagagaaa atgacctcac aaactgtcta cacggcacct ttattcctct
      241 gtacttagat tgactttctc gtactaaaat cattttccgt tttaaccagt taaacatgcc
      301 tcttctacag ttccattttt gatagttaaa gttggataat acagtatttg caaagagcat
      361 gtttggtcat ctgtggccta tgtctcatct gatacaccat ttagcaccag aaagcaaatt
      421 aaagagaaaa caaaagtaac acttgtttga aagagatcat taaatgtatt ttgaaaagcc
      481 taaagttata tatttaacag tttttatatg ttgtatattt gtagaaaatc ctatttaaca
      541 attaacgtga taactctgac agttatgaaa agtggttcag agttaagttg tgttttatta
      601 cttcagttgt ctctgaagtg actggtgtcg tttgctttct tccattggga cattctggat
      661 gtaaagcatg accagagagg actgtgtaga aaaagcaaag aataatgttg tttatattac
      721 ataaatgcat tcaaccattg cactgttgga aggca
//
LOCUS       KCOD01002853             580 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 317446pyr ultra-conserved element
            locus uce-3788, sequence.
ACCESSION   KCOD01002853
VERSION     KCOD01002853.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 580)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 580)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..580
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="317446pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>580
                     /note="ultra-conserved element locus uce-3788"
BASE COUNT          190 a           91 c          108 g          191 t
ORIGIN      
        1 ttacacatag ttaaaagaag tttatctcca aaatttgagg ttttattagt gaccttattg
       61 tggaagttaa gggggaaaat attggaaagg attaattgag aatgtcaagc cttttcctct
      121 gagaataaat tctttttgac tagaacagga gatagttaac ttctgaaaag catcaagact
      181 gatgattttg tctatatagc attgacctgg aagctcagcc attcagacta ataaatcagg
      241 caatttatat ttaatcatta actaactccc gagctgaaca gctgttcaaa attagaaatg
      301 ggtcaccccg gccaggatga cattacaggc aatctataat gcattagaat aaaattatag
      361 tgatttttaa ctgtctggaa atttattaca ctgcatgttc caactcttaa acccttgtta
      421 gccaatgtca caagtgattt atggtgcttg gctggtatgg taaaattact gaagatttaa
      481 atagacaatc attccatgtt tagcaaatct tcaaatttca aagctctttt ggagaatgag
      541 gtgggtgctc tttattgttt atggcttacc tcagtgacaa
//
LOCUS       KCOD01002854             775 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 317557pyr ultra-conserved element
            locus uce-1565, sequence.
ACCESSION   KCOD01002854
VERSION     KCOD01002854.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 775)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 775)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..775
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="317557pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>775
                     /note="ultra-conserved element locus uce-1565"
BASE COUNT          237 a          179 c          123 g          236 t
ORIGIN      
        1 ggtcacagct ctgaaccagc catataaata cagtatgatt agtaatgtct aagagtacat
       61 tcatcactta attacttttt ccattatgcc tgcacatttt atctaatcag aaagtaagcc
      121 tgcttgcttt caccttgcag ggttaaacta ataagaccgt gctgcttcaa accacctcaa
      181 aattacatat aacatgcgat ctcgattcag acactgtcca ttaattttgc aacatatttg
      241 gcaaatgaat tttaaatgca agggggtttt gaggcggcat cccctccctc ccctagctgg
      301 cccgttaatt agcatacctc ccatgctcgt tatgaagtca tgggctaatc tgacatactt
      361 ggttattaac gtgctcctga ctgaatcaat ctggcaataa atttccctac cactcttcct
      421 aacagctctc cctttatatt ccgatagttc catgacaata attgattgtg attcactcct
      481 gaaatgtacc aatcccgggg aaatggcatg ggctttcatt catcaatttc agcttcataa
      541 gtggaaattt atacaaggta tgcagatgtt tagagtttgg ggtaatcaat aaggagtaaa
      601 taaagattgg cattcactat actccacttg acaagctcca gcctaatgtt tgtcaagcaa
      661 attaaacaca ctcagacttt tcacctgctc ctacaacagc accacatatg gctctgaagt
      721 taaaaataag aaaatgtgca tacattatca tacataatgt acaactccct ccatt
//
LOCUS       KCOD01002855             639 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 317666pyr ultra-conserved element
            locus uce-7994, sequence.
ACCESSION   KCOD01002855
VERSION     KCOD01002855.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 639)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 639)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..639
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="317666pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>639
                     /note="ultra-conserved element locus uce-7994"
BASE COUNT          182 a          106 c          153 g          198 t
ORIGIN      
        1 atgacagtat gtatttgaca catctggcaa gcaaggcaag aaattacaga ttatgaacag
       61 gaaggaaaaa aaaattaatt aattactctg gagaagattg ggagtgagga cagaaaagtt
      121 ttcagttttg tttgctgaat gattagctgc tggtctttca ttaagctaat tttctttaga
      181 attgccagag tctttacctg ctttccagtg gtgcattact gccaagcacc cagctgtcct
      241 gcagctggac tgactcaggt gtggtttgca gctcggcggg caaagcagcc ggcggggccg
      301 gactctgatt cctcctattt gtcagtgagt ttctgttaag tgaggtgatg gatgggtgat
      361 gctgtgctga atgttgcttg tgagaaggtg gcaaaggctg cagggtcgac tggccttggt
      421 tatttggagg ttgttctaag aagaaagaag ttcgttaaca tcttggcatt tactacaacc
      481 aaagcagaat gagaaattca atttaatcct atcatctaat atatttgcat attattctat
      541 tagcagacat tcagtgacat tctgtaagag caagtttacc cttgatacac caagttctaa
      601 ttaatataca acagatggta aaattgcttt tggttttaa
//
LOCUS       KCOD01002856             533 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 317773pyr ultra-conserved element
            locus uce-5165, sequence.
ACCESSION   KCOD01002856
VERSION     KCOD01002856.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 533)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 533)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..533
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="317773pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>533
                     /note="ultra-conserved element locus uce-5165"
BASE COUNT          169 a          111 c          105 g          148 t
ORIGIN      
        1 ttcccccagc aaaaattatc atcttttata catgctttaa aagggtgggg gctagggaag
       61 caaagcagga tctggtatta gtccttttag tcgtcaggaa attacaaaat gtacacttgc
      121 ggagtaagca attttcacag tctgccggca catccatctt tttaatgagc cttgtttata
      181 acctgacgcc atgtttctag tcacctaccc tgtttacatc tttggcccct ttaattaaga
      241 gaagaaccag ttaaaagaaa gtaagaagaa atattaatat gatctgatta attcagctag
      301 cgggaggtta tggggtacca aggttattat aacctataaa ggcaacatga gcaaagctgt
      361 gttcatttgt aattttatta ggcagagcaa attagtgagc ccacatggca atgacaaaag
      421 accccttcct attctctctt accccccacc gaaagggcca ggcgcctaaa gttaggctcc
      481 atattaggca aatgagagct gataaatctc agccaacaac taatgagaat ctc
//
LOCUS       KCOD01002857             721 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 317883pyr ultra-conserved element
            locus uce-891, sequence.
ACCESSION   KCOD01002857
VERSION     KCOD01002857.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 721)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 721)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..721
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="317883pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>721
                     /note="ultra-conserved element locus uce-891"
BASE COUNT          207 a          135 c          164 g          215 t
ORIGIN      
        1 tttggacaat gaaaattgtg tttattacca tgtagtcatg gatgtgttgt ttgaatgggg
       61 ttacagaata ggagaaaggt agcaagaaaa gacgagtttc atcgaagaat ttattttgat
      121 tatatacata tgttttgtgt ggtctaagct gtccacacaa atatgaaatg attaaatgga
      181 gcagcaacaa ccagaaagta ttgcctggtg agagataata ctgtagctct ctaattggct
      241 ctctaccagc attcagtgtg actgatttca gctgtagcat taccagtctt cttccaccag
      301 cactattatc tcagagtgac acttccatta ctctgaacgg agaaagatga acgtcacctg
      361 tcaggggctg gttaattgtg ttgctagatg tatgttacca gggcgcaggt tggacattta
      421 tgaacataac tgcttcctct gatgtccacc atccttcaac gatcaataca gctcttacag
      481 taagcgcata attgagtgaa ggcacttacc tctgaggggc tgaagatgag cccgttgcgc
      541 aattttcatt gtccatacat tcagcacaaa tgagctgata tctgcccttt attgtgtgtt
      601 gctttgtgga aacagaaact aatgtgccac tttcatttgt ttcctagata aatggccagg
      661 atgtccagaa tcgggaagag gcagtggcgt tgctctccag cgaagaatgc aagaaaattg
      721 t
//
LOCUS       KCOD01002858             383 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 317985pyr ultra-conserved element
            locus uce-3425, sequence.
ACCESSION   KCOD01002858
VERSION     KCOD01002858.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 383)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 383)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..383
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="317985pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>383
                     /note="ultra-conserved element locus uce-3425"
BASE COUNT          118 a           75 c           82 g          108 t
ORIGIN      
        1 taacgatttg ctaggcaatg tgcaattctc gccttttaat atccaagaag aaagagttct
       61 ttataataat ttggctcaaa tgtctacaca cattgctcca gcgtctgtag cagcatgtgt
      121 ttctaggatt gttctggaag agaaaatgca gaaacagcag ggagcagaag ataaacaggc
      181 aattcgtgac tcattaaaac aagcattggt agccaacatt gtggagtgtg tgaaggcccc
      241 agatccaact cgcctataaa ctttttttac cagctggact tagcatctgt cagagtttgg
      301 aagcagagat aatctggtac aaatgatttc agtgtgtcgc atttattaac ctgccacctt
      361 acataacact gctgattggg aac
//
LOCUS       KCOD01002859             643 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 318095pyr ultra-conserved element
            locus uce-6910, sequence.
ACCESSION   KCOD01002859
VERSION     KCOD01002859.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 643)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 643)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="318095pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>643
                     /note="ultra-conserved element locus uce-6910"
BASE COUNT          189 a          123 c          143 g          188 t
ORIGIN      
        1 ggagtttgga tttttttctt tacacctaat caaaataagg atcaagagtt tattaaaatg
       61 caagaatgta agtgtgataa tcctacacaa taagtgactg caaagaggga agtgacgagt
      121 taacgggagg cactctgaat atttggaaga caaccttcct ttaaatgaga cactgctggt
      181 aacggtaatg gggaatttgc aatgaaggga aggacatgca attataatct ggctgggccc
      241 cactggacaa aaagtgattt acttgaaagc tgcctttgca ctcagtaaat gttcctgtta
      301 tgggctgctc agcctgtgac agctttccag atgtcaatca aattatcatc tatttacagt
      361 tgatttggta gtgtcatttg caatattccc tacgtttctg atgaaattgg aagcacagaa
      421 ttttctccag tttgccctgg cactcgagtg ggcaaactgc tctttgcaaa tgtcatgtgt
      481 ccgcttatca gcactctaag gagagcgatc ttccattcgg ctgagtgaat cgctaccaga
      541 tgcaaatctc tcaatcgtca agggaagagt atggcaaatt ttaatgtact ttgaaaaact
      601 cagtttacat cagtgctcaa ggtgcggctt tacccaggct aac
//
LOCUS       KCOD01002860             684 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 318201pyr ultra-conserved element
            locus uce-1769, sequence.
ACCESSION   KCOD01002860
VERSION     KCOD01002860.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 684)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 684)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..684
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="318201pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>684
                     /note="ultra-conserved element locus uce-1769"
BASE COUNT          211 a          116 c          124 g          233 t
ORIGIN      
        1 tctgagtgta gttgagtttt atagatctat ttatgagatc caatactgta atgatgtaat
       61 tttacttgtc taataaatgt agctgtacaa cgaaggatag caaacatttc cattgtgacc
      121 aaaatccttt aaactgcagc cactttgatc tcagagctca tgctatttaa taaatgctgg
      181 ccattcttct aacaatcaca attatttaaa gggttttcaa aagggataga gcaaatcaaa
      241 taaaacaatt actgttgtat ctcattctga agttaagtgt attttttatg tgggtcttgt
      301 ttagtgtctc ctcccagttt tcatccatta tcacaataat tgagtttgta gctggaatta
      361 aatttatcaa attgtgttat cctcttttga aattggatag gtatcctggc agtgggagct
      421 agaagttaat ctgctttgct aaagcctcca gtggcacagc ggcaacagga ttgagaaggc
      481 tcaaacattt tcctgtcacc ctggacacga tgtaatttct cctcaatccc ttgtgcaaat
      541 aatgacattt gaatcgagca ttaacaggct taattacttt aaaattgtca ttttaattta
      601 cactgatata gtattgatca tacaagcaga gattaagctg ttcactggag cagatgatgg
      661 ggaattaaac attaaagggt cctc
//
LOCUS       KCOD01002861             568 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 318308pyr ultra-conserved element
            locus uce-2973, sequence.
ACCESSION   KCOD01002861
VERSION     KCOD01002861.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 568)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 568)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="318308pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>568
                     /note="ultra-conserved element locus uce-2973"
BASE COUNT          172 a          118 c          125 g          153 t
ORIGIN      
        1 gcccttttta taagcaataa gaatttaata actgagggca actctatagt aatatttata
       61 tgggtcaagt ggcttaaaag tatgcaataa atgtaaagtt atgaaccaca ttgccccttt
      121 ttaaataatg cagctagcac caagatatta tgtttcatat tctggtttta gcctaggctt
      181 taggagtaca ccagacatga aaagttatac tgatcccata ataaagtcac tgcctgctta
      241 atatggtgtg ttatgtagag ctccagatct tagaccacag caagaacgtc ccagatgata
      301 tcaacaaaac cttcgctttc tcattagcaa tcagcaaatt ctcctggtgg ctgctggttt
      361 caaataaggg caagtgcctc tattccgagt gggaagccca acaggataat agaaataatg
      421 cagtctaatc agcggcgagc acacgagacc cgccagggca ggcgctggtg ggctgggtga
      481 ctttaacagc cttcccagtc ctgaggagcg ggatccgttt gtgcattccc accatcaggg
      541 gtttgaggcg gtttgcataa aaaataaa
//
LOCUS       KCOD01002862             693 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 318414pyr ultra-conserved element
            locus uce-2516, sequence.
ACCESSION   KCOD01002862
VERSION     KCOD01002862.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 693)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 693)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..693
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="318414pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>693
                     /note="ultra-conserved element locus uce-2516"
BASE COUNT          185 a          139 c          145 g          224 t
ORIGIN      
        1 ccgttatggg cttgggtgct cgcagcctca gtgacaggcc actctcagct gctcctggtc
       61 cccaataatt agcctgctat ggcagctacc tcttgtggtt ttgcctgtga gagacatttg
      121 acacagcaga catcagaggg atttttcagg aggctctcgt ggcgtccgaa tggctcttaa
      181 ttaaccactt aggtatcctc gttcactctc ctgcttggca ctttccaaat ggtaggggtt
      241 gcactgtgga tctaaacacc ggggaagcat gctatcaaaa gatcttgtaa atgaaggctt
      301 gtgtaaatta tttttaatga ttccctcctg gcacatcatt atgtttgtag ttacacacag
      361 gcacttcaga gatggctcat cttccgtaag gtcagctgca ggaccaccat aactagctgc
      421 agtcagtaaa tggcttatta attagcacag tgattttaca ttgctaagag ctctgatgta
      481 tggagctaga attgtaattg tgtaggatcg aaataataag ccatctcagg gctccttatg
      541 caaattgcca tattataaaa tcattaccta tctaaacact gagttttaat aagaattaca
      601 atgatgaatt ttatgataat tgacactcaa attttaatct cttggatttt tatcattttg
      661 gtggttaaag tgtgtttcta attaaatgtt gct
//
LOCUS       KCOD01002863             789 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 318522pyr ultra-conserved element
            locus uce-5676, sequence.
ACCESSION   KCOD01002863
VERSION     KCOD01002863.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 789)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 789)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..789
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="318522pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>789
                     /note="ultra-conserved element locus uce-5676"
BASE COUNT          237 a          154 c          187 g          211 t
ORIGIN      
        1 cttcctttaa ctgaacagtg agggagaggt gattttagag ctaactaaga gttaactggc
       61 tacatttcaa ctgtcaccat tgtcttaaat ctacatagag agagagagcc agagaagtgt
      121 aagtacagca ggcctctggg cgtttataag tagaaatttc tcctcagagc aaatttttcc
      181 agtttgtctt ggtctttccc tattttttaa acacaacgtg tgatggagac aattgttatt
      241 atcccaagga cctgacttgc tggctcactg catctctgtt tatgaaatgc cataacaaaa
      301 gtgagctcac gcttgtgtgc ttccaatgcg tgatgttcct gtgtgccaga tgggcacttt
      361 catgactgta tgagcgtgga ttatttcatt tcctacatct gggactccaa atggctgcac
      421 agaatgccac aggagagagg aacagatctt cagctgggga aacctacctt cacaggggag
      481 ccagctacat cagaggggat gaggcagaaa agccccaagt gatatctgaa agttcacaag
      541 ggccataagg gaaaccttta gaaccaggaa caagacaaaa ataaacaata actaatgctg
      601 gatgtcagct gtgcagaggg ggagggaaaa taaaccataa gcagtttctt gtctggccac
      661 agaagatgtg tttggaatgc tgttttgtat ttcagctcag aaactctgct gtgaccttca
      721 gatattgctg ggtattacaa gttctacaga tagccagaga gaaatattcc aaggagagat
      781 tgcatatac
//
LOCUS       KCOD01002864             686 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 318632pyr ultra-conserved element
            locus uce-1786, sequence.
ACCESSION   KCOD01002864
VERSION     KCOD01002864.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 686)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="318632pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>686
                     /note="ultra-conserved element locus uce-1786"
BASE COUNT          243 a          121 c          123 g          199 t
ORIGIN      
        1 aaacacccta atgtctattg tctaagcatt ttcattgact aggcagggca aaattagtat
       61 cagtagcatt tatatttttc tataaatggt ctgagcaaaa tctcataaca aatccacaat
      121 gtagttggaa ctcatctgtt ctttgcactt cctactttgc agatgagaca gtctcaaaag
      181 actgggtagg ctgaagactg gttggacaac tctataagtg aagtctcaag actcttgtca
      241 ttctagctgt ctaaattact taaacaggac tcagagggat ttaaagggga gaaacgacat
      301 gacaaacaat tatattctaa cacactattt ataacaatgc cctttcagat tattgttcca
      361 ctcagactga cacattactg taatcccagg gatgaatcaa gggacttaga gttagatcgt
      421 gcacagcttg taggcataga aaaaatagga ataaagaact gacattcagg aaatatagag
      481 cgactcaagg ataaattctg ctgggatgag cttaatttat caatgtcaat aacaacggtg
      541 aacacatcgc aagaatacat gcatattaat tgaaaataac tcagattaaa tcactgcagt
      601 ttgacatttt gagataggca ctttatcttt tcaagaaaga gagcactata aaatctttaa
      661 tctgaaaaca catcttaatt gcgtgt
//
LOCUS       KCOD01002865             596 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 318742pyr ultra-conserved element
            locus uce-6399, sequence.
ACCESSION   KCOD01002865
VERSION     KCOD01002865.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 596)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 596)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..596
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="318742pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>596
                     /note="ultra-conserved element locus uce-6399"
BASE COUNT          204 a          116 c          115 g          161 t
ORIGIN      
        1 gtgagtcata tagagaaaga gagttagccc aacaacacat ctttacacac aggagcctga
       61 tcagatttag atcttatcag ggaattaaag aagaaaagaa aaaagaaaga aaagagacac
      121 agtgctagat atcaccaact gagtttttga taacgaaaag acattgctca gttcttgaat
      181 taacctttgt gtcctagaca cactattgtt tactctttcc cttttttgtt ctatgccttc
      241 tggaaaagga cacccacaca ctgtggcagc agctgctcct attaatttaa agctattaca
      301 aaaattaaaa ttaaacccaa ttactttggc tggtttatag ctggggaacg gcttagtctg
      361 attgttccct ctggttatgg acaaaaacaa tattcctacc tacaggcagc tgccagtgga
      421 atactaatgc atctagggcc tggcaggaac agattcagaa tgcagagtct aactgcattt
      481 ctcactaaaa aaatatctta tcatagatct gcagaaatgc accaacttct tacgctgtga
      541 gtcacaatga agccaatttg tagttagagg caggaaagca aaatgatggt ggaaac
//
LOCUS       KCOD01002866             727 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 318850pyr ultra-conserved element
            locus uce-3821, sequence.
ACCESSION   KCOD01002866
VERSION     KCOD01002866.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 727)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 727)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..727
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="318850pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>727
                     /note="ultra-conserved element locus uce-3821"
BASE COUNT          209 a          132 c          193 g          193 t
ORIGIN      
        1 tgttaacaat attttaaacc aatctcttca aactccaggt atttcttgaa tttagtgttt
       61 gatacacctt agctgacctg tgcaacaaaa atctgcaatg tcaaaaacaa ctgttgcaaa
      121 acaatggtga ccatggacca aaatacttgt ctgtgtaacg gcaaggtcga attctgttcc
      181 cttttgacaa cctgttcaaa caaaatggag gaggaaaaaa ggaagcataa ttacatgaga
      241 agtggcagca gtgttggtta aggtggtgcc atctgacaca gcagacatct ggctcaaggt
      301 tggggaaggt gtttcagagc agtcagtagt atcatagcta caagtctgca gctcatctag
      361 aatggctgtg gaggactcac tcactgtgcg ggaggagcac tcactcatgg cagagtctgt
      421 gctcacagag gctgtgtcgt tcctgtggat aatactgtca ggagctaggt atgggcattt
      481 gtatgaaaac tgtgagaggg ctggggtctt ataaaagcgt gaaggcaaaa aatcatcaag
      541 cgttggcaaa aaatatggta ctagatgggt gccactgtct ggtgagaaag aggctctgtt
      601 aactggtacc acaggagaag gaagaggcag tggagaagct tctgttgctg tttgtctgtg
      661 tgtctgtgaa gcatttacct ccatcacagg ggcagttact ttctggtttc caagctgaga
      721 tttgagg
//
LOCUS       KCOD01002867             415 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 318958pyr ultra-conserved element
            locus uce-5239, sequence.
ACCESSION   KCOD01002867
VERSION     KCOD01002867.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 415)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 415)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..415
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="318958pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>415
                     /note="ultra-conserved element locus uce-5239"
BASE COUNT          132 a           72 c           77 g          134 t
ORIGIN      
        1 aaaaagtaat aaccaagtta ctcagaaaca gtaggatggg aaatgggatg acaacatacc
       61 ttgttttgaa aagttgtgta atgtaataca atattgtaat aatgtaatca tttagtgttt
      121 attttattat gtgtaccttc tactcagagg gttggcatta ttgttcctaa cagtgatgga
      181 tacaagcaga tcatgcccta tgacctctac catccccttc ctcggtatgt aaaacaacca
      241 gatgctaggc ttgatacaat tcttctcgac tttgctctca agctaattta acagatgctg
      301 atgctctgga ctcagagatg tccaagtgct aacctgttat aaattatgtc aatgcagagc
      361 tgaaattata atctatctga aggagaaatg catttattaa gcgtagtgtc cattt
//
LOCUS       KCOD01002868             610 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 319065pyr ultra-conserved element
            locus uce-7545, sequence.
ACCESSION   KCOD01002868
VERSION     KCOD01002868.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 610)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 610)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..610
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="319065pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>610
                     /note="ultra-conserved element locus uce-7545"
BASE COUNT          200 a          134 c          102 g          174 t
ORIGIN      
        1 ctaccatatg caagaaaaag catttcacat gcacgaaaaa ctagtgcacc aaattccagg
       61 ctataaataa ggcaattgta aaatgtaaat gcttagaaac actagcaaac ttcagccaac
      121 aaagcaggga tcagaaattt ataccctcgt tactggtaat tacagtcgca ttctttactg
      181 atctgtattc ccagccaaca cataaaagtg tcctggtgca ttacctgctc agaactgagt
      241 caccccgaat acacatgttc cagaaagcaa atctgtggcc atgctagcac atggagctct
      301 gctgctgctg taaatgtatc tgtctacctt ttaagcaaag taactgaaag cccctcaggg
      361 tgttcttacg aaatgtaaat tctctgactt ggagacctca gcataaaatc gctgctttta
      421 gtggatggca gtttaacccc ctccttccca taataaagtg aggaaaaaga aattcagttt
      481 ttttcttctc cattaattta ggcatctaac agaaataaac aataaattct taatgccctt
      541 gtaatctcaa cttgtcaata attcatattt gaagcttctg ctattcaatt gtgaggaaag
      601 atgagccttc
//
LOCUS       KCOD01002869             651 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 319177pyr ultra-conserved element
            locus uce-6535, sequence.
ACCESSION   KCOD01002869
VERSION     KCOD01002869.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 651)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 651)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..651
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="319177pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>651
                     /note="ultra-conserved element locus uce-6535"
BASE COUNT          235 a          108 c          108 g          200 t
ORIGIN      
        1 aagatttttc aggaagagaa aaccaccaca aaacactgaa gagtatttta tgttatgtac
       61 aatcactctt gtttgtgcag ttctaacccc tttataaaaa ttctttgacc ctgcactgaa
      121 tggtcatggt tgattggaaa atcaatgaag tgctgtgaga attgcacctc actgttgcag
      181 aaaagccaca caaaaatcca acttttcaca tgagatgaag attgcctttg gttcatttac
      241 tctcttaaga cacattaaaa tcaaatctat caccccattt ggccatctgt caattctcac
      301 tacacagtaa atgagtagac tttgttcctt gatcaccaga aatggaggat gttttgttgt
      361 tgtaataaat ggtcttaggc ctcagagaca gaaataaatc aatgcaattt ataaagttgg
      421 ggtgaaaatg ttagatgcag ttttctaaac tacagagaat tatgtatgga tgacttgcaa
      481 taaataaagc acagctttag aagcttacaa aaataaataa taaagatgaa agaaattaat
      541 gtgtagtcct ttattttgaa acctttcaaa gcataaaata aatacaagaa taagttgcac
      601 atcaaaggtt caactgtcta tacatttcat tttatctggt caggcaataa a
//
LOCUS       KCOD01002870             552 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 319289pyr ultra-conserved element
            locus uce-4199, sequence.
ACCESSION   KCOD01002870
VERSION     KCOD01002870.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 552)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 552)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..552
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="319289pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>552
                     /note="ultra-conserved element locus uce-4199"
BASE COUNT          143 a          129 c          123 g          157 t
ORIGIN      
        1 aagtcaagtc aacctctcga cccgggcatc ctccaccaag agcggtagga ggaggaagaa
       61 tcgcactagc agcctggctt gactttgatt tgaaccattt tgaatatatt tagtcccagc
      121 tttcccctct tgaatgcaag gctgtcccaa gtttcaaagt gaccgaaaag tgacaccgtg
      181 tgcattttgt ttcttattaa tcttacacat tgacagtctt tgttaaataa caaggcgtgc
      241 ccttcaccag gcgacatttt catatttgtt agacgcggtg acctgaagtt cacctcggcc
      301 ttggacttag tttttctaaa aggtctataa cagtgtcttt tagatagcag ggtgctttgc
      361 ccaggtcact acttctaaga gaaaaataag aaaaaaatcg agggaaaatg taaacgttat
      421 ggaatgtatc gactgtatta atttctttgt tcctgggagt gatacagccc cgaagctgct
      481 cctgcctcca cggagtcctt cccgatgggc tctgccgggc cccaagttca gcatttggta
      541 aaggggctcc tc
//
LOCUS       KCOD01002871             737 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 319395pyr ultra-conserved element
            locus uce-499, sequence.
ACCESSION   KCOD01002871
VERSION     KCOD01002871.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 737)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 737)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..737
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="319395pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>737
                     /note="ultra-conserved element locus uce-499"
BASE COUNT          230 a          121 c          132 g          254 t
ORIGIN      
        1 gaaaatagat cggctgccgt tttcataaga tgcagtgaca aacaggagat caaatttttt
       61 ttctttaaag gtgtaagata ccgagatgct gaatgcatat ctttcctcta gtgatggctt
      121 ggagttaaaa accacgtaga tcttgatatg caacctaaat ttggcatcag gaaatgggaa
      181 attgcatctt taagcagagt acaatcaaaa atgaattaca ataaatccta tataattgca
      241 taggtcattc tctttaatga gattttatta acctgactgt caagcttttg agtcaggcag
      301 atattttatc ttcttcaact gataaaagtg tcagctataa accaccatat aaatattcat
      361 aaatctacac atctgtggca gcctatcagc atcattcttt tggacattaa aagcattcta
      421 attactttct gtctagcaga gctgaaatgc tgcctgttat agtatgtgct tggcaggcat
      481 gattgctttt gtttgccatc acaaatagca gcatcctatt ttatatactg atggtccaga
      541 atatattcag ggtttgactg aacaggatga atattatgaa gcaccatctg gttttgataa
      601 catcgggtat attaactcat ctgttaattt ttgacacatc attgatttat ttatttagaa
      661 aaattggatc ctgttttggt atgttgctgt ttgcctttgt aacaaatgtg atgacatttc
      721 cttactaaac agggaga
//
LOCUS       KCOD01002872             448 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 319502pyr ultra-conserved element
            locus uce-5418, sequence.
ACCESSION   KCOD01002872
VERSION     KCOD01002872.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 448)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 448)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..448
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="319502pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>448
                     /note="ultra-conserved element locus uce-5418"
BASE COUNT          132 a           85 c           97 g          134 t
ORIGIN      
        1 ctctgaagca tcagacaacc tgcataacct gaaacttaat ttttccagag cctttggaag
       61 atttgcctct tatcactact gttcagctgc agagttgata ggaacttgta ggaacttgca
      121 agctaagcaa ggttactttt agcttcatta tcttcatgcc tccttaaaaa gggggaatgc
      181 aaagttattc aacatcgaaa gcactgtatt gtcatggtct ataaatgtgt ttgctggctg
      241 catactgtac ttcctttatc tgaccttgct cattcaaaga tgcacttgtt atagtatgtc
      301 agtcactaat gaggcctaag taattgagcc tgattgaact ggcaagatgc tgcctaatta
      361 taatgataaa tggaattggc tgatcagcta tggagggtga atggcgtgga gaacattaaa
      421 acaaggtcac gctgtgaagg agaaccac
//
LOCUS       KCOD01002873             511 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 319606pyr ultra-conserved element
            locus uce-7188, sequence.
ACCESSION   KCOD01002873
VERSION     KCOD01002873.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 511)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 511)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..511
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="319606pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>511
                     /note="ultra-conserved element locus uce-7188"
BASE COUNT          160 a           73 c          104 g          174 t
ORIGIN      
        1 tggattatat aggaaagttt cttttgaagc actcctgata ttgtgcaatg cacttggggg
       61 tcagctacac ttgactgatg catgatttat cccatgtccc tgccacttcc tgagataaag
      121 ctgctatttt atcaaaaatg ccagcaggtg tgatttagaa tttatacccc tcctttttca
      181 aataattgtt ctgattactt tctggcacgg caataaaatg ataaaggtaa ttgcacacaa
      241 atgtgagata gcaccaaaat acaataaaat taacctgaat tagcttgact tgtcgatgag
      301 aagtatttat gaaatgtatt tttgcaataa gggagactga tattatagct ggaaggtgag
      361 ttattgcctt aatgtaatac tgtttgaaat ttaaaaaaga gactgttaca gttgagggtg
      421 attgtgcctt tgaaattaag ttgaagtgat tcttataatt ggcagcaata atgcattggg
      481 aaggtaatat cttttattgt gttatgccta g
//
LOCUS       KCOD01002874             671 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 319717pyr ultra-conserved element
            locus uce-3187, sequence.
ACCESSION   KCOD01002874
VERSION     KCOD01002874.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 671)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 671)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..671
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="319717pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>671
                     /note="ultra-conserved element locus uce-3187"
BASE COUNT          208 a          129 c          119 g          215 t
ORIGIN      
        1 ctaaaattca gaatcttcca gattggcagc tcgggcaggg tgagatgaga gttttgtgtc
       61 attaaactat ggtcacttag actgtagaag aaaatcatca aaatttattt catattcgac
      121 acagaaagta tcaagccaaa attttatttc acaatactaa atctgaagaa agggaaaaag
      181 agaaagaagc ttaaaaagag gaaggggggg aaggcagtac taaaactgca gtcttagcct
      241 tctaaaccct tttgcttctc tgattgatac ttttcaatta taccttccca tttcactgac
      301 atttgaaatg ctattttttt tctagcgata acttcaaatg cttaagttcc aacagcacca
      361 gtaaccctgt ttagctgtag tagtaaattg gttccttgta caacataatg gcagtgacag
      421 ccttttgcta gggaaatgag ttctccaatg ggacatgcct atgataagac gtccggtttt
      481 gaaattgtat ttctctgtat cagaattaaa tctggacttt atatttcttt gctgccactg
      541 ctctgtagct ggtccctata cagtacgacc aaagactgac aagtaatgct tacacaggaa
      601 ccctttcact taaattggat ttgtcctttt atgtttcctc ctattattag ctattaaaat
      661 ctctcaaacc c
//
LOCUS       KCOD01002875             596 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 319825pyr ultra-conserved element
            locus uce-2928, sequence.
ACCESSION   KCOD01002875
VERSION     KCOD01002875.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 596)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 596)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..596
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="319825pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>596
                     /note="ultra-conserved element locus uce-2928"
BASE COUNT          213 a          112 c           86 g          185 t
ORIGIN      
        1 aaaaagacat tcctaaaatt acgtagatca gtaaaatgag ttcattgtca ttacttactg
       61 ttataatgta attttttgat ttcacaatgt tggatgcaat gaaaatgatc ttgatataac
      121 ctataagaag cagtctatgg tgaaattgtt aatcacacaa aaagcaccag cttctcaact
      181 ctgtttgaca gttccaaaat ccaggcacac atccagaaga actttctgcc ccatgtctgg
      241 tcagtaaaga aattgaggtt aacctttaat ttttaatgtc acctgcagcc agtgactgct
      301 ttttctaatg caagtgacag ataaacagca aaacactccc aagatgatac acaaagcacc
      361 acataccata agtgcatttt tatttttata ccaactcaat ttctcaaatg gataaccaat
      421 gttcctacta atttacatta agaattgagt gaggcatgaa aattgttctg atgcataggc
      481 tctatttctt taatgtactg catagtgttc tgtactttat tgcaacactg gaaaaaaaga
      541 actacataca gaaactacac atacaagctt atatacgtct taaaatcact ttagaa
//
LOCUS       KCOD01002876             522 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 319934pyr ultra-conserved element
            locus uce-6258, sequence.
ACCESSION   KCOD01002876
VERSION     KCOD01002876.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 522)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 522)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="319934pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>522
                     /note="ultra-conserved element locus uce-6258"
BASE COUNT          172 a           99 c           87 g          164 t
ORIGIN      
        1 agagattatt ttttccccgt ttcacttcaa taaagtcatc ccaaggcatt atttacaacc
       61 gcacataatt tacctatgct atttggcaaa gcaacttcgg aaaagaaagt gaatgaataa
      121 atacttcata actgctggta gaacagactg gatcctgtaa tgaagaaaag atttatgtca
      181 cgttcttcca gcccaaatag cagcagcctc tgtttgtctc agcccagtgc ttctatttaa
      241 atgttacttt catatattat gtggcattaa tttaactata gctcattaag gcagaatgaa
      301 atggttaaat taacttatca acccataatg atgatgaatg aggtattaat tcagatacaa
      361 gctgggcaat ttgcaagttt acgcattctg atggttctca aataacattt tgaatagcgg
      421 gtcagcgcct caatcaatta cataagcatg taaagtcggt ctctcggaaa aaaatccttt
      481 ttcatgcata tgcattaaaa catgttcgca attatcctcg ga
//
LOCUS       KCOD01002877             478 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 320044pyr ultra-conserved element
            locus uce-1344, sequence.
ACCESSION   KCOD01002877
VERSION     KCOD01002877.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 478)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 478)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..478
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="320044pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>478
                     /note="ultra-conserved element locus uce-1344"
BASE COUNT          151 a           96 c           79 g          152 t
ORIGIN      
        1 gaaaaaattg taattatcca cagttttatg aatccacctc cccttaatgt tcattattta
       61 aaccagcagc aattacaagt tcaaaggggt ttagagggcc agcaacccgc ataatcactg
      121 ccaaattaag cgggactcat tcgtcacaga agagtacact ctgagcagtg aatcatgcat
      181 gcagtgacag gcactgattt acataaagac gaaatctgtg ccctctaggg ctgagtgtta
      241 ctttatctca gtggccctgt gatatatgca ttttcttttg gtgttaggaa agttcagaga
      301 ctgatgctgt ctaatacatt atattttatt cttaccatca ctactactgc ctaataaata
      361 ctaataaaat actgcctaaa caaattcgtg tatttaacta acaataatcc atacttcaag
      421 ggtcttgagt ttttaaaggc aaagttttat ccagcttttc taatctgtta caatactt
//
LOCUS       KCOD01002878             561 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 320154pyr ultra-conserved element
            locus uce-5129, sequence.
ACCESSION   KCOD01002878
VERSION     KCOD01002878.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 561)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 561)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="320154pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>561
                     /note="ultra-conserved element locus uce-5129"
BASE COUNT          154 a          114 c          112 g          181 t
ORIGIN      
        1 taattgagtt gaataattaa ttaaatatct aaagcctatt ctgcgtagca aaagttctgt
       61 cttttcttaa gcgacatttg gccttttgaa gaaaaaattg gaaatgctaa tgtttttcat
      121 ccaactaagg gaagaaaata aaaatgtctc catagcaaca aagcttcttt ctagatggtt
      181 tcctaaaata tgcctgaacc agaagcagat gtctgatttg aaaatctcgc cttcttcaat
      241 gtaaacaaat aacttatagg caggtgttgg aaataatatg gaaatcctat taaagagcct
      301 tgggttcctg tcagtcagga agcccctgcc acaaaagggt tggttgtctg aataaaggag
      361 gcagagtaaa ttctcgtaag gctttagctt ttcccaggaa attattgtct ctgcatgctc
      421 tttcccctgc aagtctgaat gcaagccatt tcttctactg attgccaccc tcgctttctc
      481 cctctcttct cctgctggat tagcgcttga tgtcagtggc gtgctgctgc ttggggtgtt
      541 ggtgatttta acccctgttc c
//
LOCUS       KCOD01002879             621 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 320265pyr ultra-conserved element
            locus uce-1836, sequence.
ACCESSION   KCOD01002879
VERSION     KCOD01002879.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 621)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 621)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..621
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="320265pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>621
                     /note="ultra-conserved element locus uce-1836"
BASE COUNT          203 a          113 c           96 g          209 t
ORIGIN      
        1 aaaaacccca acagaacaca gcacttgccg tctcctctgg ttgcacagaa catgaaagag
       61 ttttttattc aaatgaaatt atactgattt tttttccttc agcatgctat agtgaacaca
      121 agcttaaagc aatcttttcc aatggaccat tttacttatt ctacaatttc ttacccaaat
      181 tacacaggta taattatttt gacactgtaa tgaaaagaaa atgggatttg ggcactgtgg
      241 gtttatctaa taacactatt tcttgccaga cttcacagca ctgacaatca caaagagccc
      301 tgtccattcc aataggaaat atttgatttt actgtaggaa cattatttat tttcaccaag
      361 ttgctattat cagaaaggat atgatagctg aataataaaa atgaaatcaa gaaattctgg
      421 tgtttcaagg ctttattttt ttctgctctc acttttgaca ttttcttccc ctggagagac
      481 aagataaagt gctgtcataa atgggtgact tttcttgtca aatgacagat ttgattctcc
      541 atggcaacca caaatcaagg tgctagtctg aattaaagct tctcttaaaa ggcgtcttta
      601 tgtttataaa atgaatttaa a
//
LOCUS       KCOD01002880             355 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 320370pyr ultra-conserved element
            locus uce-4797, sequence.
ACCESSION   KCOD01002880
VERSION     KCOD01002880.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 355)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 355)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..355
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="320370pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>355
                     /note="ultra-conserved element locus uce-4797"
BASE COUNT          123 a           64 c           63 g          105 t
ORIGIN      
        1 tgacattatt tgcatggaaa cttgcataca aatgatgtcg tctgtgccac aaagttgcat
       61 tacaatgaag ggaatgatga ctgtgtcaca tgtacgtgac attctttgtg tcattaaatt
      121 taaagtcaat gctggcagtt ataaaccact cacgtctcaa gcaaatacat cacttctgat
      181 ctgaaatgaa tattttaaaa tgccaactcc aactgcatca aacagcaata acctgcaatg
      241 tcatcttgga ggcaaagact ctaaacaaag gtggacttat gggattgtat gatacaccac
      301 aaaggaaaat attttaataa gctgtaataa tttccagcag aatttgttgc ttgat
//
LOCUS       KCOD01002881             642 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 320472pyr ultra-conserved element
            locus uce-5076, sequence.
ACCESSION   KCOD01002881
VERSION     KCOD01002881.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 642)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 642)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..642
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="320472pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>642
                     /note="ultra-conserved element locus uce-5076"
BASE COUNT          192 a          122 c          120 g          208 t
ORIGIN      
        1 aaaagaaaaa tgcgtttgta aaccagatga acttttgact gtattgtgtc cctcttacaa
       61 gcaaattaat aattcctgta ggttacctgt gaatgtgatt aatgttcagt attacatttt
      121 ctagtgcatt ttggcaatat ggaaacctga acaagaacac aatttcaaat taaagcaata
      181 aatcagagtt agtgaaataa ggtgtgcagc cccgctcctc agtgtcttgt cccactactt
      241 ttggcagcag gagcctcttt atcagctact gtctttccag tcacgcttgt gttcacgtct
      301 ttgctacatg ctctgctgat taccttggaa aagggcaatg ctgtaactgt tgaactgacc
      361 tttcagttta ttttctcttg tgtaatatga aacatgagct aacgcagcct tagtctactg
      421 atttcgtctg tcgctgcatt tctgcagctt tctgctcaga tgtgatgggg tttctcggta
      481 gttacattaa ttccagaagc tccatcaagt tatcatcaca acagtgcagc aaattattta
      541 gtgtacaatt catgcatagt aaagactact tagcagagga atagtgaaac aatgtattaa
      601 atgaagaaaa aataaatgaa atttgtctcc ttacatacag ag
//
LOCUS       KCOD01002882             669 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 320586pyr ultra-conserved element
            locus uce-2178, sequence.
ACCESSION   KCOD01002882
VERSION     KCOD01002882.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 669)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 669)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..669
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="320586pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>669
                     /note="ultra-conserved element locus uce-2178"
BASE COUNT          193 a          132 c          126 g          218 t
ORIGIN      
        1 ggatatttca gcctgtccct aaaacttgcc atagagccaa gtgcaaaaca gatgagatcg
       61 cctcttgcag ctcccaaatg gttaaatggg ttaaatctta tttatctgaa tagaatttgg
      121 gtttagcaga atgctccagc acaaatacct gtggttcact ttgacgttac aatttttttg
      181 ttggtttctt tacttataaa tacttgaact gttagacctt ttactttttt ctctgagaaa
      241 gatgtatttg taccagatta gaaaagctaa actgtttctt tacattgaat aatcagcctg
      301 tcatgacaaa tctatctact tctgcatgag taggtgccag tttgactagc ttcttttagg
      361 ctcacactgg gttttaagct ggatccgtgt gcatgactgg cagtgcattt gttggaccag
      421 atctaaggag ccagagagcg ttcagctcct ttttgcctac aaaagagcag ccagacaacc
      481 agcaagaggc cttggatgta gcacaaggtg atacttactt agtcagccat tcttttttca
      541 aatataagag tttttcagtt tcacaatgac acaaggaatt aaattatcag tggattgttt
      601 ttctacagcc accattcttc acacagaaat actgtaccaa gtgaattgta cgttttccaa
      661 agcaacata
//
LOCUS       KCOD01002883             428 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 320690pyr ultra-conserved element
            locus uce-2526, sequence.
ACCESSION   KCOD01002883
VERSION     KCOD01002883.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 428)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 428)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..428
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="320690pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>428
                     /note="ultra-conserved element locus uce-2526"
BASE COUNT          126 a           76 c           80 g          146 t
ORIGIN      
        1 gaagaaatgc attttccaaa ttgaatgcta gatttacagt ctgtttaata ctggcgacct
       61 ctcgcacact aatgttcagt tcgagtcatc agctgtccct tcaggtcttt tatcactgct
      121 tttgtcaagc tatctattta attgaaagaa gttaattgaa tgaaaatgat caactaagct
      181 tgtattaata ttgctaatgg aactttcttc ttggctatgt ttggagaaag atgtcatgct
      241 agactttagg aaaggcccat taaggcttgc acttaacctg atgggctaat taaggaatgc
      301 ttattcattc tacaagtcta aggtagcctc tatccagcct attccgcgtg gttttacaac
      361 acatttcact tatgagcata agcattaata gcagtgagag taactgataa tgttttgatt
      421 gcattgaa
//
LOCUS       KCOD01002884             845 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 320805pyr ultra-conserved element
            locus uce-1910, sequence.
ACCESSION   KCOD01002884
VERSION     KCOD01002884.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 845)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 845)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..845
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="320805pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>845
                     /note="ultra-conserved element locus uce-1910"
BASE COUNT          241 a          203 c          197 g          204 t
ORIGIN      
        1 tcctaaagcc gtgtttccaa ggataaaatc ttacttgcaa agatccttat tacatgtgcg
       61 tacccttaag ctgctgagat gacaccacca cttacaggtg gtggagtgaa agcaagcaaa
      121 agcaccaaac ccctaaagtc tcaagtcact gcaatcatct tcaactccca aattgtcctg
      181 gaaggagaat agcatcggat ttgtcttagg ctgtttggcc aaactggggc acagatggga
      241 taatgacttt tacaaacagc attttgatga gaggagggga gaaggaatca tatgtaaaat
      301 gcacaaaggc tgcataaaca cactgatgcc tgcagctgga acaaactaaa aagatgttta
      361 ataatttaga accaagcagg cagggcctgt gcagctgttg tgtgcagggg accatgaaag
      421 tcttccattt gacagctggc tccatctttc cccagttgct acgtgaagaa gcgaatgcag
      481 atttgggatt agccaatccc tgttacccct gcccatctgc caccaagacc cccagctccg
      541 gctcctctcg ccggagaagc acagacataa aaaagtccac tctctcccaa acatatgtat
      601 gcatcaggat cagccgtcag ccgttccgag gatctgttga catgccgcca gtacatggct
      661 gctgtcgttt ttgctgcagg gcacattttg catttcacac atttgcagaa atacaaaatg
      721 ctgttggatg caaacaattc agggcctaat tggctgaatt acttcaatgt taccttgtgt
      781 cccccacctg attaccatag ctcagctggg agggctagga gcagagaggg atttggaggg
      841 caggt
//
LOCUS       KCOD01002885             668 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 320914pyr ultra-conserved element
            locus uce-208, sequence.
ACCESSION   KCOD01002885
VERSION     KCOD01002885.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 668)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 668)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="320914pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>668
                     /note="ultra-conserved element locus uce-208"
BASE COUNT          189 a          159 c          132 g          188 t
ORIGIN      
        1 tcaataggtc cactgtttgg ttcaccagaa ctgaccaccc acttttatga gaatctgcag
       61 tgaattagaa aatctgtcat tgctggagga gctggacagc taggatacag cctgtcattc
      121 cttccataca atacacaccc tttgtccact atctcttaaa ctaacctgac ataatttagc
      181 ctcccggtca atggcatctt tattctctcc caaggaatgc ttcgttcacc agcgttatta
      241 agaaatttct ggacaatgtt tagtggctgc gcaatcatcc aaggttctat taaaaagcca
      301 tctgggtaat taatagcaca tttgttctca gcctcctccc aatttgtcca ttagtggaat
      361 aaaagcacag gacaaagggt aatgtggttc agttatattt tacaagaatt cttcaggaag
      421 ttaaaaacac atgatagttt tccaaagata catatgttta tggggagagc tgcaaaactg
      481 cacaagccag aggctcttaa ccaggcttct cccctgtcca tagcagatca gctattgact
      541 gtgggctgcc ctgtgctggt gtctccagcc tgggatgggg agggcgtgtg aatcatctcc
      601 ttcatctcaa ttcaactgca gctgataaaa cgattccaag atccatgtca gggcaccaca
      661 tcaaacac
//
LOCUS       KCOD01002886             369 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 321018pyr ultra-conserved element
            locus uce-7002, sequence.
ACCESSION   KCOD01002886
VERSION     KCOD01002886.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 369)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 369)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..369
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="321018pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>369
                     /note="ultra-conserved element locus uce-7002"
BASE COUNT          124 a           86 c           46 g          113 t
ORIGIN      
        1 ctccaggcca gattcttctt cagttatcac acttctcctt cactcccctg cttgtcttct
       61 aatcaaagca aaccactcca acttttaaat gaaactaatt ttcatattgc ccacatatac
      121 atacagttaa gaaattacag tgacagtgat aaaaaatgtt aatttttctt tccagatgct
      181 tgtaaaacag ccttaacata tgtccgctgt ttaattaaca gagcagcagc atggtggagg
      241 gaagccaaac taataattta aagaagcatt ctccctccct tgatttgaat cccaaaacac
      301 atccatcatg tgcatttctg aaactgcaaa agatttaatt ttctgaactt tcagcaaaca
      361 tcataaaac
//
LOCUS       KCOD01002887             749 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 321126pyr ultra-conserved element
            locus uce-598, sequence.
ACCESSION   KCOD01002887
VERSION     KCOD01002887.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 749)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 749)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..749
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="321126pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>749
                     /note="ultra-conserved element locus uce-598"
BASE COUNT          240 a          148 c          128 g          233 t
ORIGIN      
        1 aagcaggctc acaaaacatt ctcaccaaag ctccttttac tctgcttaaa cctgacgagt
       61 gacaaatgca gagattctct ctgtagccgc ccccatgata acagatgaca agatgcagca
      121 caagcttcat ctcttgctaa ttaaacgaat caattaagag actattgttg caactgtgta
      181 actgctgttc tatagtggca ataacaaccc cacggggagg tcttttacta cattaaaatg
      241 ctgtcctcca caactccatt tgatattatt agaaacagtt atttgcgtct tgctgtcata
      301 ttagtagcaa aggcaaatta tggaaatatg cagaccagaa tggtcccagt atgagatcag
      361 gtttggtttt caacctccaa gggaacaatt gctgaaattc caaagttccc taaagttctt
      421 taatggaact gataaatcta tcagcacagc atccatttag attctaggta agggtcacat
      481 atttgcatac gttcctgcta agctgataca attcaactag ataaattatc atattaagtt
      541 taccctcctg agttaaactg atggagttca aaattgtttt cgatggttgt cattaatcgc
      601 tgttacatcc taaatgctca ctttgaaatc taattgtgct ggtgtaccaa gggtcatatt
      661 aatagcattt ttaatgttaa atctttgtaa aacatgttta ttttactgat attaccactg
      721 aagcctagaa gactaatgag aaacaaagt
//
LOCUS       KCOD01002888             676 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 321238pyr ultra-conserved element
            locus uce-4956, sequence.
ACCESSION   KCOD01002888
VERSION     KCOD01002888.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 676)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 676)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..676
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="321238pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>676
                     /note="ultra-conserved element locus uce-4956"
BASE COUNT          208 a          103 c          138 g          227 t
ORIGIN      
        1 aattcagtct taaattttat agaactaaat tcgatggtga gcacaatcac actctgtggt
       61 gattgttttc agtgctgctt tattaagtta tgtaatggca agagttcaaa ctgcagagat
      121 tgttgaaatg gtagatttag agactatgtt agaatgcttg tcagtaacaa gttttcaaaa
      181 cgcaaaccta gatattgctg cagcttgtga tttttattta aatagtttgg aggttttaga
      241 cttaataccc tgcttttaaa aaatgtttta aaatcttgtt ttattcccca aagatttgtt
      301 ttctgctgtt gcgattagat gatgacagct agctggcttt taaaattgat caggaagtat
      361 tttggcagtc attcagtgtt gtaatagcac tttaatggat atgagctatt cacccagatc
      421 agactcaatg tcaaaacagg cgaaaataca gctgtcactc tggacaagaa gttgcatata
      481 tgcaagcagc tgctaataat actggaagga aagccttata aaatgcttta aaggtgcatg
      541 ttatatgcat acatactgct tctacatgtg tagacatccc agagacctta gtttctggcc
      601 atgggtgtgc ttagaaaaat gaaatatata ccctgacctt tgaggaagtt gtgataagtc
      661 cattatgtgc tggtag
//
LOCUS       KCOD01002889             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 321335pyr ultra-conserved element
            locus uce-6324, sequence.
ACCESSION   KCOD01002889
VERSION     KCOD01002889.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="321335pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-6324"
BASE COUNT          166 a          159 c          119 g          158 t
ORIGIN      
        1 ttgagctcag aaattgtgca aaggacttcc acatggtatt accaccacct aaaacctcac
       61 cctacccctc tgcatgtgat tctcacccat acagtctgct ggtgtctcct tgcctctgtt
      121 tatactaaag cccttgcaga ataaaacatc catgtaaaat ccaatttcct ctgaatctct
      181 ctctgagaag aggcctcgag attgagtaga taacctctgc agtaattgcc tgagccactc
      241 ctgtttgctg gaaaggtgag atccattttt caattatcta tctgcagtga cagcagcgag
      301 caacagagct aagaggaaga gagaggaaat ccagccaaca agagccgtct gtgtcaatcc
      361 tggcaaacgg gaggtacgat agatgtggtc acagttcctg ccatcaatat cctctaatat
      421 aaatgtcagc gatgccattt tacccacagt catttcccac aatgctgatt acattatcgt
      481 ataatagagg ggcgccagcc gcaccgcttt ctctcctaac cctccttgcg gtaatgtgtc
      541 aatagcctgc ctccatgaaa caagtcaatt ttctgcaggc ttggcagcgg aataaatctg
      601 cc
//
LOCUS       KCOD01002890             655 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 321438pyr ultra-conserved element
            locus uce-2710, sequence.
ACCESSION   KCOD01002890
VERSION     KCOD01002890.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 655)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 655)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..655
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="321438pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>655
                     /note="ultra-conserved element locus uce-2710"
BASE COUNT          206 a          106 c          117 g          226 t
ORIGIN      
        1 aagatttaaa actctatgtt tctttatttt aacaccctgt agttcccttt ttctaatttt
       61 tgtcaatgat aattttcatt aagaggcagg aaggttagag ttgtttgaag tgacaacaat
      121 ttacatcttt ctgccacagt agtgaaagaa ggatctgtcc ttcagtctgt tcatgctata
      181 gttacgaaaa gtataaacac tgaattcctg agcttgctgt gagatggaag gtcattaaca
      241 gggcacttga gcagattggt attacagtca attgagacgc tgaaacatcc taaatggcct
      301 aatgcagcaa ctaagtgctt cttaaattcc agaactttta cttgagcaga gcattcatgt
      361 ctaaagtgaa tttccatttc ctttagtaaa tgctgttttt atagagtcat atttgaagag
      421 gcaacatagt gtaaatacag cagtttgatt ctatctccac agcagcacta aactaatttg
      481 tcaagttata aacatgaaat ctgagtctct gtattttcta tattgaatta atagaaatga
      541 caggagtttg tgtgttaata tatacatgca ctgtcaatat agtcctgtca gactaatcag
      601 catgagaata ggaatggttt catcatttgg gttttaccat tatccaatta attca
//
LOCUS       KCOD01002891             792 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 321546pyr ultra-conserved element
            locus uce-6396, sequence.
ACCESSION   KCOD01002891
VERSION     KCOD01002891.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 792)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 792)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..792
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="321546pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>792
                     /note="ultra-conserved element locus uce-6396"
BASE COUNT          219 a          162 c          157 g          254 t
ORIGIN      
        1 tttaatttcg gaaagtgtaa acattgccaa gttttgaagg tctgaaccaa ggatactgac
       61 ataattttca aaggcatggg taatacctca gcacctccct tcaacataaa acccagaggt
      121 ctgacacaag caaacctctc tgtaatccac ttcatgcata acatttctgt cccacatcct
      181 tcctgattat ttgtgaatcc acacggtgtt ttgcatatga ggttcaggtg atgtatttta
      241 ttgctgatac tgtttcacct gtatttagtt ccagtgacat ggaaaacact gcagccaatt
      301 gtccttatta cagtccctgt gtatttctcc ccagtgcact tgcacagggg aaagatgtga
      361 gcgtggagtg tacttaactg ccaggctgaa tggctctgta atgtagcttc agcatggcat
      421 aaattaagct gtcatttttt tggcagcaag tgcagagagg cgattttcct gtactgtaac
      481 atttgaaaca acaattttct ggctccagta gtaactgaca gttctgtgtg atacatgctc
      541 aatgtttgtg cttcaggggc tgcagctggc ctttggggta aggtattgtc tttattagca
      601 aatcgagctt gcagtcagag aacactaata tttcctaatt cttttcaaag accctggaaa
      661 aattgtactt aaaatttact agattccatc aaggtattta actgtgttgc ttatatgcaa
      721 aacactattt ttgataatta cttcagaccc attttcatta ggaagattgc ttacccagaa
      781 ggagctggcc ac
//
LOCUS       KCOD01002892             560 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 321659pyr ultra-conserved element
            locus uce-7637, sequence.
ACCESSION   KCOD01002892
VERSION     KCOD01002892.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 560)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 560)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..560
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="321659pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>560
                     /note="ultra-conserved element locus uce-7637"
BASE COUNT          145 a          122 c          118 g          175 t
ORIGIN      
        1 gggaaggtga tagggaaaag caagggtttg attggcatgc agtgattttg gactagcaga
       61 aagcaggcgt ctgtgctctc cagcccccac atacttctca gtccatgagt gttgagaggg
      121 aaaagaaacc gatattgttc cctctaaaat taattcccag ttagccagtt actcctggtt
      181 tttagctcag agcacactgt aattgcattt ttcatttcag taattataga ggatattaaa
      241 gtggattgac agttgtagca atctggctct ttagacatat ccacttgtcc aagatcaaat
      301 ggctacagca tatttagggt tacagtctcc ttcttttcct tcttgttctc tactgcagtg
      361 catcagcgtt accatgacaa cactatatct ggctgccagc tctgtcgtaa gttattgaac
      421 tgagactggc ttttggttta gcagataatt aggttctgtc tcacaggttc attttcctgt
      481 gactgggaca tgaatatgac ctacagctgg cctcaatttc agtgtcacag acaaaacttt
      541 aacccttcct agtcccgcca
//
LOCUS       KCOD01002893             741 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 321765pyr ultra-conserved element
            locus uce-5598, sequence.
ACCESSION   KCOD01002893
VERSION     KCOD01002893.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 741)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 741)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..741
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="321765pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>741
                     /note="ultra-conserved element locus uce-5598"
BASE COUNT          205 a          154 c          155 g          227 t
ORIGIN      
        1 tttttagcta taagaaccag cttgttgcca atttccgtca ccccaggtta aatcctggtc
       61 ctattgaagt cattgtccaa atgctcattg gctgtgaggg gcgatcagga tttgtcctgt
      121 tcaattcatt agtgatggta tgaaccccaa gtagtattac acttccaaag aagctcctac
      181 ttactgttta tatactaacg ttatttctca cacgtttatt gtgttactct ccttaatttg
      241 gtgccatgct gggtccctgt gggatgccac tcaaacatta tgtcaatgtt ctcaaaattg
      301 aactccagtg ctttatttta caaatggctt ctagcagatg tgtggcacac tttattaact
      361 taagtaccca ttagttgaaa atttcattag tttgggggaa agggatcagt ttcatcaata
      421 gatctggtat gggtggaccc tttgtgtcaa cctgacccat atcaaaacgg attattgttg
      481 taagtgagac aagtgaccta atgttctgcc tattatgcac acatgatcta taacctttta
      541 aaatactagt gtgggaaagg agcacacttc actgcatccc caaaccatgg attcttaaca
      601 ggtggcagtc cctctcttag caacgtttgc catgggctgt ctgcgccagc gtatgaatta
      661 tcagggggta cagtttccaa ccaggtaacc ggggaaaact gggatggaga atgaaaacag
      721 aataatgaac ggccaagcaa a
//
LOCUS       KCOD01002894             510 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 321874pyr ultra-conserved element
            locus uce-3832, sequence.
ACCESSION   KCOD01002894
VERSION     KCOD01002894.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 510)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 510)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..510
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="321874pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>510
                     /note="ultra-conserved element locus uce-3832"
BASE COUNT          152 a          105 c           84 g          169 t
ORIGIN      
        1 tgaatcaata ttcctgcaac aaaaatgtgt aactgatatt ttctttgctg ctaaaaatgc
       61 ttctcagtaa acttgttttc ataagaagtt tgcccattca tacgtcccag agctgctgta
      121 atcttcattg ctaatgctga tctaagagca tggacattat tttatttctt gacacattta
      181 aagttctcta atgaataaag caaacagctt atggctgctt ggactgtcac tcgattgccc
      241 tggagggttt taatgtcttt aaaataggcc tcctagtttg tatttaacta ccttgcccac
      301 agaggtctga ggggtagagc agatcaaaga tgtaaaaagc agctgtcctt catttacctt
      361 taattagcta catctgacca gattctttat ggcctctttg tcacacattc aacagtctat
      421 aagccttctg acctgtcctt aaggactcta ccaaagagtt tcaacaaaat acaaaaaata
      481 tgagctacaa aactttgtat ttggtctcac
//
LOCUS       KCOD01002895             686 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 321981pyr ultra-conserved element
            locus uce-5797, sequence.
ACCESSION   KCOD01002895
VERSION     KCOD01002895.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 686)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="321981pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>686
                     /note="ultra-conserved element locus uce-5797"
BASE COUNT          204 a          155 c          159 g          168 t
ORIGIN      
        1 ggatgcactt gacagagcat aatatatcac ctgtcgagag accccggcct tttactggta
       61 taattacaga gtaaacactt gtccgggctg ttccctccgg ctccgagaca ccagaactga
      121 ttgttttaat accaaagtga caccaaaggg ggtcaagtaa ataaatatgc atgtctcacc
      181 agtgcaaaat aataaaattc caatgtgtgc aagcctgctt gttgaacata tgtttgcagc
      241 acggctaagc catctggctc aatgtcaagc atttacacca actgcagtct tacactacct
      301 gacagcagaa aagctttatt cccctggtgt ttgggcacaa atggagaaat attattgaaa
      361 tgattatctg catcaagact cagatttggt ttgacattta gctggctctg tttaatccaa
      421 agggttgtct gaatgaataa agagaagggt tcctccagaa gatgctgcga gcagccaggg
      481 aaagccaaat gattaatgag actgagaggc tgggtggacc ctgcccacct ccacccagac
      541 ctccgtgcca agaactgcat cagaaatcag gctgaggctt ctggagcttg tcaggaggat
      601 gctcatggcc gactctattt ttggacctta agaaaacaac agaaatgagt acgttgctcc
      661 caggcaggaa ggaaaggtcc atgtcc
//
LOCUS       KCOD01002896             612 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 322092pyr ultra-conserved element
            locus uce-4851, sequence.
ACCESSION   KCOD01002896
VERSION     KCOD01002896.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 612)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 612)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="322092pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>612
                     /note="ultra-conserved element locus uce-4851"
BASE COUNT          169 a          123 c          157 g          163 t
ORIGIN      
        1 cggaatttgc taaagcagtt cagagtgatc gacccacggg cagggagaaa caaacgcgag
       61 gagttggttt attcacagat cgccatgagc gttaatgacc ggcccagcct tgttctgcca
      121 ctcacccaga tggctgttga taaagattta gcatcatgtt ccgagtgtca gggctgtcag
      181 tagtgctgaa ccgtttgacc agaagaaaaa acgcacaggg agctattgat tacagcttct
      241 cagtgtcact tgttcaccag gatttaggta ttgatgaggc tgcgagtgaa aacaagctct
      301 ttcccttgtg ggcctctacc cagaagaaca aaatattcag ctggtgcccg aatcagaggg
      361 actccggcat cgatccgagg gctccttcat gttaaaatct ctgggtttgg aagttttata
      421 gcgtttgagg taggggcgtg tgatggattc gtggagtaga agaattagat ttcacagcat
      481 gaagatttca gcggcactat aatattatga gctgcttggt tattgataaa aattacatta
      541 aatgtagctg aggcattaaa gctccagact agggtagttc tccctctaaa atgtccttag
      601 ggccctaata aa
//
LOCUS       KCOD01002897             635 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 322199pyr ultra-conserved element
            locus uce-681, sequence.
ACCESSION   KCOD01002897
VERSION     KCOD01002897.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 635)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 635)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..635
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="322199pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>635
                     /note="ultra-conserved element locus uce-681"
BASE COUNT          204 a          120 c          117 g          194 t
ORIGIN      
        1 gaaagtaaaa gtacagtcca ctagaacaca ctttgtgctt tatcgtggtc ttgctacctg
       61 ggagcagtga ttgtttagct tgtttcctcc attgtctcca gtgattactg gaatcacatt
      121 tctagggtaa acaaggtgct ctttcccatt gtcccatttt ctgtcaggaa ggtttgaagc
      181 aaagtaggcc tcccaataag ttttctaatc cagataagca gggctaagat atctgacagc
      241 tgtttcacgc tcttcatcat catctgaaac aatcagtacg cattagagag tacttttccc
      301 tttacaaagg tgataattag ataacaagct gagattaaag taattacagt tagacagctg
      361 gcaaggcagc acagtcatgt tgaaatattg ttgatacttc agcatctggt tctaataaca
      421 gcacaggcta aaagatttta cattaattac agaacataat ttaatataaa catatttaat
      481 tacaattgat gagcgataaa ctgttcaaga atgacttaac cccttacaca tgtcaaaatg
      541 attggaactt cctttctact tccagagcaa gctactgaaa ggttaggaat ctccaatttt
      601 aagaaagctc tgtaactgga aaggtgaact gttga
//
LOCUS       KCOD01002898             632 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 322308pyr ultra-conserved element
            locus uce-2377, sequence.
ACCESSION   KCOD01002898
VERSION     KCOD01002898.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 632)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 632)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="322308pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>632
                     /note="ultra-conserved element locus uce-2377"
BASE COUNT          165 a          130 c          160 g          177 t
ORIGIN      
        1 tacttgatag cagggtatca tttatgattg atcttgcaga tctctgcctc aattctgtac
       61 ttcacaaaaa tactcggaag ctgagctgac tttgttgaat gtgagaataa ataaagatcc
      121 gagtgtagga gtgaggacat gtgttgtcgt gttggtgaca gtgtctgaga gtgttgggga
      181 tgtgaagtga ggtgtacgat agtaatttgg gtttaaatat gccagaggcc cagattaaac
      241 acatatccag gctgatctct tgaaacagtg gaaggatctt ctctgagtcc aacacttatg
      301 acaggttcaa gggcctcaag ccgactgtta tccttctctc ccgaggaatt tccgacgctg
      361 aaagcagctg gcgagcagga caaggttggc aaagaaaagg gcgccttaga tccgtcgtat
      421 gggccaggac caagcctccg cccccaaagt gagtgaagga ttgtgtcttt ctgccttatg
      481 ggggtgccag ttcacaatag taccaagtac tccatcctta tattccctct ttttatgagc
      541 ttacacgtgt caggctgctt agcagatgat catgtctgtg gtccagacag ccaatcatct
      601 actacactgt tcagtaaaaa ttgctgtgtg at
//
LOCUS       KCOD01002899             586 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 322419pyr ultra-conserved element
            locus uce-4082, sequence.
ACCESSION   KCOD01002899
VERSION     KCOD01002899.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 586)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 586)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..586
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="322419pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>586
                     /note="ultra-conserved element locus uce-4082"
BASE COUNT          173 a          129 c          119 g          165 t
ORIGIN      
        1 tgccatccag aggattccgc tctggctccc tgcatggccc aactatttga tattcggatg
       61 ctttgcccct tcttccattg ctatgacaag gttacacaaa gtctgcagct ctgcgaaaac
      121 aggttcctct ggaagctgaa actctgacag acttcgtaca cagcaaggca cccgtgacat
      181 cctggcgtct gccagctcca ttcttgcttg attagctctt ggttacctca gtgataatgt
      241 ctggaggcac tgattaatgt acaataatgg tacatctcac tggaaagata agcttataga
      301 agatcaatta aacagtggca atttcacagg ctacaagctg gaagaatggt acctgcagcc
      361 ttttttctct tttgtttgct ctagagttta aaacaaagaa atatcctgaa aacgaaagct
      421 gatggtaccc tttaaaatta caagggaaaa tgaatatgaa tcaaggcccc tgaacattcc
      481 ttcagctgtc agaaggttac gaattctgct ttgatgataa gacaagaagt tttcaaatgc
      541 aaacttgcca taaatggtac ataggagaat gccattgttt catgca
//
LOCUS       KCOD01002900             591 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 322527pyr ultra-conserved element
            locus uce-3909, sequence.
ACCESSION   KCOD01002900
VERSION     KCOD01002900.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 591)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 591)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..591
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="322527pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>591
                     /note="ultra-conserved element locus uce-3909"
BASE COUNT          183 a          123 c          126 g          159 t
ORIGIN      
        1 aaaacaagcc cttcagcaat agcacaagaa attgcattaa caacatttaa gcaaagtgtt
       61 gaaaacacac cgaaataaat gctagagcac ttcaggggct gataggaata tgcatcaaaa
      121 tgcctggcat ttaatctttc ttcgggaatt tagccagtga aatatagctg ccagtgtctc
      181 aggcctgcgt gtgttcttct gcaatatgct ctcgatcaat cagatttgca taactaaact
      241 gtcggcaagc ccgctcggct gcccaggtgc agggccattt gcatatagaa cagtgaggag
      301 gtcccaagag tcacttcaga ctccagtgac tgctgagccc gcagtccaca ccgcactgga
      361 aatgaaattg gaatgacaaa aaaatggttg tgctagtctg caagggtgaa atatgcactt
      421 gtgtttcaaa ggttatgtag agatcacaag acagcattca ggcacgagaa tatgcacaag
      481 cctccaggaa agtaaatgct gttgtatgtg ttttgtttcc tttccccagc cacaatgata
      541 catatttatt tatttatata tgtgagtaga cacaaaaatg ttttttcctt t
//
LOCUS       KCOD01002901             714 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 322639pyr ultra-conserved element
            locus uce-1405, sequence.
ACCESSION   KCOD01002901
VERSION     KCOD01002901.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 714)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 714)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..714
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="322639pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>714
                     /note="ultra-conserved element locus uce-1405"
BASE COUNT          228 a          142 c          139 g          205 t
ORIGIN      
        1 acttgaactc aaatgatact atataggctg aatgtgaggc aaggttccca caatgcactg
       61 tgaaaaccta agctaacaac caccccgctg cgttgaaaac cccaaaaaaa gacaaaagca
      121 caatgaaata gaaagcttac caccggtagc tttcaaacta ggcaaactat acatctccac
      181 cactccaatt ttgtcagaat gctaatgagc ttgctctgat ctttactcgg cttcccgtgt
      241 tttctacatc ttcaaggacc acatggcgct agcaaaataa agacaactaa atgagaattt
      301 cgaatgcttt ttgtgttggg acctggtgcc tttcagttga cgcactcgtt gaatattctc
      361 aacttaaaag cgtacaacag ggggctgggt atgaactttt taccaggggg aaatttgtac
      421 aaaagtaaat gagtgtgatg aggaaaatat gagaaaaatt tctgattaat ttccgctcta
      481 taatatcaat gacaccttca gcccctctcg tactcctcta acaagagatg ctgataaaag
      541 atgaatgatt ctgtgttgtt cacagtgaat gtttagtggt tttttaatag cggcattcta
      601 cataaaagac accaggaagt actccgcatt agcagttgag atcactagtt aataggatga
      661 tgtcttttag cttttgtcac aagattatta gaaaggatgg gtttctgttc tcat
//
LOCUS       KCOD01002902             635 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 322747pyr ultra-conserved element
            locus uce-7898, sequence.
ACCESSION   KCOD01002902
VERSION     KCOD01002902.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 635)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 635)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..635
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="322747pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>635
                     /note="ultra-conserved element locus uce-7898"
BASE COUNT          186 a          105 c          119 g          225 t
ORIGIN      
        1 tgcttctctc ttttatagat acaacactgt ttgaaaatgc attatttcac gcagagggtg
       61 tctataagtg agtgaatata gtatagtaca tcaagttgaa gagttatttt agacagtttt
      121 tttcagttaa aatccatatt tactggattg tttcaaagtc caaaaatcca gtctctgcca
      181 cttgaacagt cttgctctga ggaatatgtg gacattagca taaaggttgc acatgttata
      241 caaagtgtaa ttaaagaagc tttgatcccc caaatgtcaa ctagcttgct aagtgtcata
      301 acaaagtgtc aagcatctgg tatacagtta atttgtagtc attaactgca tattgttgat
      361 gtgacagttt gttagcaaag caagcttgac agtttgcatt ttgttattga ttgacaccta
      421 tagacctccc cacccgtcta gtttacattc tttatgaggg ttactcaggt tgcactttta
      481 cttttaacta attagtttag ttagttggtt aaaatggagt gaaagaggga gcccaggacc
      541 cctaattccg tgtttctcga ccgcatgtat agattagcaa tcagtttttc aagtgtgttt
      601 ttgatattat tggtaatcta taacttgcat taaca
//
LOCUS       KCOD01002903             664 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 322857pyr ultra-conserved element
            locus uce-2, sequence.
ACCESSION   KCOD01002903
VERSION     KCOD01002903.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 664)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="322857pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>664
                     /note="ultra-conserved element locus uce-2"
BASE COUNT          206 a          110 c          126 g          222 t
ORIGIN      
        1 taagctgcta agatttgcct gtgaacggaa gttttaacaa aacagtttgt aggtgttccc
       61 tctgaaccca atatcctcag ctcgtgcatt tgcatgtgtg tgcatgcaca gattttttag
      121 tccttacact gtaaactttg gaattgtttg accctgtaaa cacaaaattc atgtctctca
      181 ccctgggaca aatacattct ttttaaaagc agcatatggg cagccttgga ctgatgttag
      241 tttattgtca ctgcttgata acatttaatg gaaaagatac aagagtgcca aagaatttta
      301 attatttttg tgataaagtt atatgttcgg ccttgaaaaa gtggagataa tgctgggatt
      361 cattattatt cccagtgtgt ttaaacagac gacacagaat gcaaacaaaa gcagatgaaa
      421 tttgaaaagt attatcaata ttgcagatag cagatgccct ttccaatcag aacaagcata
      481 tcttctatag caactttatg gttgagtagt ttattcattt ctattagaag gttgtacgtt
      541 tctaaaatat gtagatggta tctagaaaac caaccaacca gtagggtcat tttgcttgtt
      601 ttcctaaatt tattatttca cttttgcagg cttgatctga ggtgcattaa catgggagcg
      661 aaat
//
LOCUS       KCOD01002904             537 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 322961pyr ultra-conserved element
            locus uce-4619, sequence.
ACCESSION   KCOD01002904
VERSION     KCOD01002904.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 537)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="322961pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>537
                     /note="ultra-conserved element locus uce-4619"
BASE COUNT          155 a          106 c          134 g          142 t
ORIGIN      
        1 gggggggctc agtccttgtg tctccttttg ccctgttgtg ctggccaggc tcctttgttt
       61 atacagcccc cgttcgacct tttaaattgc tgttaatgtt ttagcgtaac gaattagtct
      121 ctcatcacga atcaggactc gaaataaaaa aaaaaaaagg agagaaaaaa aaaaccctcc
      181 gaggccaact tcctgaaatt ggggtcattc tcatttgcaa ggcagagaat ctgagaacct
      241 taatgcaagg aaatttattc aaaggcagag ccccggcgtg attaggccct ttgtaattat
      301 agctcggaga gattccactc cagcctcctg cctccctcat ggattagcaa gtgagtcgga
      361 aaaatacaca ggatttaatt agaggcaaat taaaattggt aatgaaatag gggcagtagc
      421 aaatggcagg gagttggaag gggaaaaggg agctggtatc tctcggggct gcgctggctg
      481 cctacgtgtg cgtctcttta ttttacattt agaaatgtaa agatggtcga tgtaaag
//
LOCUS       KCOD01002905             569 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 323064pyr ultra-conserved element
            locus uce-2828, sequence.
ACCESSION   KCOD01002905
VERSION     KCOD01002905.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 569)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 569)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..569
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="323064pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>569
                     /note="ultra-conserved element locus uce-2828"
BASE COUNT          189 a          103 c           88 g          189 t
ORIGIN      
        1 taactgcttg acaaatattt cattgtctct atacagctca ctgctgccac ttgtttggaa
       61 aactgaaagg taagttgaaa aatgcacctt ttccattttc atctctaatt gaattctctc
      121 ttgaccccct tattccccat ggctgtattt caggttttga tgataagaaa aagaattttg
      181 tatttggata atacaatttt ctcacttgcc ttcagcgacc ttcagctcaa tttcctctcc
      241 ccagagacac tgtatattat agaattgaat caaattcctt attcatagaa aaaaagttcc
      301 aatttaatct gaatattcag cattttacac tggtcagggt gatggatggc aaattgaaat
      361 gcttttggtt caggtaatca aatggtagaa ttcagacttg tattgaaaaa aataatgaag
      421 tctattcaat attctcataa ggtgcaaaaa atgcacatta catggtagaa ctgggtctta
      481 ttatctaacc aataacatct ccactgcaaa aagtatagta aaacattaag aatttatgta
      541 ggttagaaca tgtgaaaagc agccacctt
//
LOCUS       KCOD01002906             392 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 323172pyr ultra-conserved element
            locus uce-2025, sequence.
ACCESSION   KCOD01002906
VERSION     KCOD01002906.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 392)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 392)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..392
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="323172pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>392
                     /note="ultra-conserved element locus uce-2025"
BASE COUNT          162 a           69 c           46 g          115 t
ORIGIN      
        1 gaaagctaca aggaagagat tgatgtaaga taaatgcaca aaacactttc attttcttta
       61 ttttcaatcg atactgtatg aatacaaagt ttctagaaag ctacaaaaat tctaccactt
      121 tatcaagaag gcatcaaaat gtgtcacttt gcaaagacat gaaaacacct gcagtaaccg
      181 acacaaaaat agcattttta gagtgatgaa ataattgcac ttaactgtca tggatattaa
      241 agttatcaca catatgtacc gcgaaagcta gaatacattt tttacaaagc actttataaa
      301 aaaattctct gcacacaaaa cctataattt tcatattact atcatactaa agataaattc
      361 actttaaagc caacacttaa aacattttaa ac
//
LOCUS       KCOD01002907             755 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 323276pyr ultra-conserved element
            locus uce-3670, sequence.
ACCESSION   KCOD01002907
VERSION     KCOD01002907.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 755)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 755)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..755
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="323276pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>755
                     /note="ultra-conserved element locus uce-3670"
BASE COUNT          198 a          193 c          162 g          202 t
ORIGIN      
        1 agaggaactg gatgccaaat ttcctctgtg tgccaactgg cagctgagct acagctcctc
       61 gaaacaccat tagatcgagt acgtcaagtt ccaataataa aatttccaaa aaaagcccta
      121 atgatggtat agatttattt taagcctttc aggtatgacc tcaccacctc aagaagtctg
      181 tatttccatg gatgtggtgc tttgtttgcc tcctcctccc tcgacaggag agtggggctg
      241 tgtgcgagcg ccgcgtctga cgttggacaa agctctgctt tccacaacag ccaccttcca
      301 aaacataact tgctagacta atgggcagtg agcagccaga atgactgccc tccgtcttct
      361 ccttgtgtaa ctttgccaga gtccttggaa cttgccaaat tcggtcatgc ctgcttagct
      421 tgctcgactg attgtgccag aaaagaaaat aagacacaga tgtatttgag ctctttgaga
      481 tgccagtaag agcgacagct aatggcttca tttcgaccct cccctaccag ctgggcacag
      541 gtggggggat aatgaggtcc ctctccctaa tcaaactcaa ttatttacta ctctgtacag
      601 ccacaaagac attcacatcc agctcggaat ataaactgca ctgtgggcta cttccagcca
      661 ccacctctgg gtatttataa ctaactcaag tggctcagag tttgccttgg caggagttgg
      721 taaagttctg caaactgttt ctgctcaaac atgtc
//
LOCUS       KCOD01002908             467 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 323378pyr ultra-conserved element
            locus uce-3137, sequence.
ACCESSION   KCOD01002908
VERSION     KCOD01002908.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 467)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 467)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..467
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="323378pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>467
                     /note="ultra-conserved element locus uce-3137"
BASE COUNT          149 a           77 c           82 g          159 t
ORIGIN      
        1 aaagtgacat cctttggttt caaagtgaat tcatggtcag aaacaaggaa tgccacactc
       61 acctgttttt cttcttcttt ccttctttct tgaaatttat ttcaggaagt cattaaaatt
      121 cagatcccat catttgtaac aaatgatgtg aagtgttagg tacagtactt ggaatatatg
      181 tttgttaaaa tgaaggaaga gactcttcca acactttggg attttatgaa tgatttacat
      241 ctggtgctaa agttcataaa tgaaacgtgg gagaaccaga tgcttcattt cttgactgca
      301 tcgtgtctgc acatactgat ggtgaattga aaataggaat gtctcataaa tcaagaaaat
      361 ctatttttgt actcttgatt tctattctga acatccatat aacacccaaa caaaagtggt
      421 aaaattggtt ccttgagaaa ccctttatgt ttagtaacag tgtgaac
//
LOCUS       KCOD01002909             423 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 323484pyr ultra-conserved element
            locus uce-5202, sequence.
ACCESSION   KCOD01002909
VERSION     KCOD01002909.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 423)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 423)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..423
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="323484pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>423
                     /note="ultra-conserved element locus uce-5202"
BASE COUNT          148 a           75 c           96 g          104 t
ORIGIN      
        1 agaaggatct tcagagcagc aatttaaagt tatgatggct ctccctgtaa tgaagaaatg
       61 gtgacgaaca gcatagacac aaagcaggga tgaaatactg agtcctttat ttcttgtgtt
      121 tcaacagggc agagtttagg gtatggattc gttaactaca ttgatccaaa ggatgcagag
      181 aaagccatta acactttaaa tggactcaga ctccagacca aaaccataaa ggtaagcctt
      241 ttgctcaatt caggaaaagt agtcgaaatt ggcaatttca tcacggttaa cgagctcctc
      301 cttggaacaa tgagcggaca tgcagaagat gaaatctctc ttctctgaaa ttgctgctat
      361 tgttaaaggg aggggaaagt aacaggaagc ttaaagcatg acagttagaa taaaacagcc
      421 aga
//
LOCUS       KCOD01002910             565 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 323592pyr ultra-conserved element
            locus uce-3300, sequence.
ACCESSION   KCOD01002910
VERSION     KCOD01002910.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 565)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 565)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..565
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="323592pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>565
                     /note="ultra-conserved element locus uce-3300"
BASE COUNT          155 a          101 c          126 g          183 t
ORIGIN      
        1 tgaaggcctc ttgcagtagc atccttaaag ctggccagca atgctgaagc tctcagattt
       61 ataaatgtat accccactca ccttgtcggt catgttctaa atgccacagc tgagtcaagt
      121 tgtgtgggac gtggcccttc cgactgtcca gtcccacatg accctatgat aaaacaagga
      181 ggtatgactt gatgcgagat tgctgtgccc catttctctt ttttcagctt gactcaatgt
      241 tatttatctc tttctaatct gacagggatc gtttacagtt aagataactg atcagaagga
      301 tatgatgata agaggtggaa tagttctgtt tggaattaaa ctctgtaacc agtagactca
      361 aacacaaaca agctaaaatg gtgattaacg atgcatgtat gttttttcat atagtcaata
      421 gacctccgtg tgctatttat tacagtaatg aagtggtgtt gatagctaaa ctgtgtgctt
      481 ttatttaatt gaaagagctg tagtgaaagt ttttaatttt ggttttgttg ttgaggagtg
      541 actttgccat ggggagcaaa gggcc
//
LOCUS       KCOD01002911             627 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 323703pyr ultra-conserved element
            locus uce-5, sequence.
ACCESSION   KCOD01002911
VERSION     KCOD01002911.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 627)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 627)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..627
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="323703pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>627
                     /note="ultra-conserved element locus uce-5"
BASE COUNT          182 a          132 c          140 g          173 t
ORIGIN      
        1 aaatgagcca ggtgtcaaga caggaaacac atcagaataa agagaagttt ctgaaaaata
       61 aaccacaatt gttttctgct ttatgacatt tccaccgctg tgttctattc cccttttacg
      121 gagtgtcccc ttgggaagtg gggcccaaga gccctttcta ggatgggaca ggatattaca
      181 gcttggtttg tgcaccagca tccttaatat ttccttcctt tcagaagcaa atagagcgta
      241 cccttatctg aatgctaatt tcctagttaa aaccctccct tgctgacaag ggactgaaag
      301 agttttaaat cacagatgta gagtatcaaa tgcaataatg ctcttgcaat agtgcattga
      361 agcctcaatt aattaaccct tgggctaagt aggcaggtac atggtggtgg ccacaggcgg
      421 tggatggatg agatttaaat gggcatctca tttcctcagc acggaacatg cagtttggtt
      481 cagaaaggag tcattttaca cactcgcctc atttacgctc agctttaatc cctttaattc
      541 cacctgagat ccaagcaaga atgggaaaag agagagaggt gcaaaaggct acagagctgg
      601 gctttgttta catatgtttc cccaggg
//
LOCUS       KCOD01002912             523 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 323809pyr ultra-conserved element
            locus uce-2736, sequence.
ACCESSION   KCOD01002912
VERSION     KCOD01002912.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 523)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 523)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="323809pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>523
                     /note="ultra-conserved element locus uce-2736"
BASE COUNT          195 a           68 c           85 g          175 t
ORIGIN      
        1 ccccattgta aatagatcat ttgccagcat tatgtaacat aaagaaagag agttttttca
       61 taataaaata aaatgagtgc ataaacaaga ccagaaaaga gctctgagtg tttacagaaa
      121 taaaaataaa tgagtgtgtt ttttaaatta atattttcaa atgttcaggt tgaattaatt
      181 tgagaaatat gaatatgtat tggtagggtt aattctttgg ggttttgaaa attcttacaa
      241 ccacataatt aaatgagtgc ctttagaaat actgataaaa cccattgcca ttcaaatatc
      301 catacaagac aacaggggct gtaagctgta ggctttagag attagtttgg ccatgggcca
      361 gtatttatca caacatttcc atcttagaag ataaaattta atcattttta tttaaatata
      421 aatcaaaatt aatgcaggtt ttcaaaaaag gagtgtataa cctaatcaca gtatctttat
      481 tttagagatg cttgcctcta ttgtttctat tcaaaggagc aat
//
LOCUS       KCOD01002913             761 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 323916pyr ultra-conserved element
            locus uce-7095, sequence.
ACCESSION   KCOD01002913
VERSION     KCOD01002913.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 761)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 761)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..761
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="323916pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>761
                     /note="ultra-conserved element locus uce-7095"
BASE COUNT          249 a          163 c          131 g          218 t
ORIGIN      
        1 cacgttaagc aattctaagt gctatgattt ctagataata ttgcaatttt atatttattg
       61 tgccatctgt cacaagaaag aacagatata gaacagtggc aaaatcacgt taaaaagact
      121 gtcttgggat aacaaagaga aaagttaatg gacatggatt tacaaattat taatgatttt
      181 tcttgtcatt tcttgaaaaa tgaaagctat gcacgctgtc tctttcccca aacagattgc
      241 attttattcc tctgcagttt gtccgtcagg cttcactctg acaacataat ccaaaactaa
      301 tccagagcat tcagttttcc ttgttggctc tcatgcacac tgcttagaca aatcctgcta
      361 cctgtcagcc ctcctgtgtg tgccaaacag gctgccaggt taacccctgg ggaagccgag
      421 agacctgctg acttaacccc tgcttccctt caaataatcc actgtaaata cataggacgt
      481 taacaggcta actgttctaa tcagggctgg atcccctaaa atctgtttca tacacaatcc
      541 ttaagaacta gggatctaag catcactgct ggaagaggaa aggattgctt ccaataatac
      601 gagcactaaa taagcagatg gatagaacac actgaaaggt tttaatcccc taaaggagtt
      661 tgagaaaata tacacatcac ttcaattgcc cacctcattg cttataaatt ttacctaatt
      721 gtcagaacaa gatcagaaat aattggaaag caagtctaat t
//
LOCUS       KCOD01002914             768 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 324136pyr ultra-conserved element
            locus uce-1048, sequence.
ACCESSION   KCOD01002914
VERSION     KCOD01002914.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 768)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 768)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..768
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="324136pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>768
                     /note="ultra-conserved element locus uce-1048"
BASE COUNT          245 a          122 c          147 g          254 t
ORIGIN      
        1 aaagtagcag aatgggaaat agcacaagtt cttctgagtt ttgctactgt gtccccgtac
       61 attctagctg ctatggtaac cagttaagac aatcagtaga tgaagtttag atattgttat
      121 gtacatgaag tacatttaaa ttcttccatg tacattttcc acaatattaa gggttgtact
      181 ttctttttta gatcagctgc atccaaaaag tattaaataa aacttgatac aggtgatttt
      241 gcagcatgta tacaaattag tttagataaa tcatgcattg tcctacaaac tagttatttc
      301 tggcttattg taatatagct cctgaatttt ttccagcagc ataataaaat ggctaatcag
      361 gtgaatggta atgcggtaca gttaaaagaa gaggaagaac caatggatac ttccagtgta
      421 actcacacag aacactacaa gacactgata gaggcaggcc tcccacagaa ggtggcagag
      481 agacttgatg aaatatttca gacaggtata atatgcattt cttgtttctg attggttatg
      541 aaagtgagga cataccattt tcaaattttt atagaaaaaa ttcattgttt ttgatctgtg
      601 tagctctgaa tgttttgcta ctttgatttc cctgaaggca aattgggttt gacattgact
      661 aattacttga cacatccttg gagttgtatg tgatatctta gttgggcaca gagcactagt
      721 ttcttagacg tcaaatgaag atgtatgttt ccacatacta aactgtac
//
LOCUS       KCOD01002915             358 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 324242pyr ultra-conserved element
            locus uce-4489, sequence.
ACCESSION   KCOD01002915
VERSION     KCOD01002915.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 358)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 358)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..358
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="324242pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>358
                     /note="ultra-conserved element locus uce-4489"
BASE COUNT           94 a          102 c           67 g           95 t
ORIGIN      
        1 atgctcctga agtagcagga gacgggcaat cctgctcctc agccccatcc tgccaggccc
       61 ctgccttccc tcttccggcc caactaccat gcgaaagact ctgtgactga aatcttaatg
      121 ctaccaagac ccagcaattg gcaccaatta aattgctaca ttcatgtttg aattgcttta
      181 actggcgaga cacactgtct tatttataca aaaaaatatg tttgcttgtg ggtttctctg
      241 aaccgatgcc agcagaaaat acaccatttc aagccctgca ctcttcaagt tcattctcct
      301 ctcccaagct ggaagtcacc ttggtttcag cctttgccaa gaaatggtgg cagaacag
//
LOCUS       KCOD01002916             481 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 324348pyr ultra-conserved element
            locus uce-2146, sequence.
ACCESSION   KCOD01002916
VERSION     KCOD01002916.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 481)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 481)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..481
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="324348pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>481
                     /note="ultra-conserved element locus uce-2146"
BASE COUNT          147 a           95 c          121 g          118 t
ORIGIN      
        1 tttgctttgg tctgtctttt gggaatggct tccgagggat acaataacct acctccaatc
       61 ctgccaaaaa aagctactgc tccctcagag atcaagtggg cagcagcccc ttaacaggaa
      121 ctggtctatg agctaccacc acatgtctaa ttaatgaccc tgccggtcgc agctggaaga
      181 gctgagctgg gggtgattaa ttaaattagc tggcagagga aattacagtg gaaaagccaa
      241 agtttgattg ctccataatt aaccacagtg caaataatat ctgcatctat aacttccagc
      301 gatgagatca gaagccaatt gaatttggca ctgattgaag ctgtaaatat cctgtggtga
      361 aaaatgatag gtttgttctg aagggaaaac ttacagaaat ggacatccag cggatgcgag
      421 aggggagcag gggacaggga ggaaagagca ctggaattag atcttgatct cagctgattt
      481 c
//
LOCUS       KCOD01002917             489 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 324460pyr ultra-conserved element
            locus uce-3336, sequence.
ACCESSION   KCOD01002917
VERSION     KCOD01002917.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 489)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 489)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..489
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="324460pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>489
                     /note="ultra-conserved element locus uce-3336"
BASE COUNT          155 a           90 c           91 g          153 t
ORIGIN      
        1 gaacatttgc ttttatacag attatatgaa tgcctttcag agcaatactt tacataaaca
       61 gttgattctg catttccacc tagcaaagag gctcttatta cctttaaatt ttggtgcaca
      121 taccacccat cattttcttc ctctatttaa aaggtaaccc atatatctgt cgttttaggt
      181 ttccaaagac tcgtaactta attccttcag gctattcatc agcacagtaa ttaaactagc
      241 aaatggatgt aaataaagtg aaattggttt catgacagat gagccaaaga ggcctctgac
      301 atgaaacaag ccaggacaat aattatttct gcaccgggct atatgaggaa ctccatctgg
      361 atttattagg tgctgcaagt tatttgctgg gagaaggcaa gacaggagga ctcgctttaa
      421 tttgacagga tttgcatctt aagtaggtta gagagataaa aatctggaat taactttggc
      481 aatactctg
//
LOCUS       KCOD01002918             384 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 324561pyr ultra-conserved element
            locus uce-451, sequence.
ACCESSION   KCOD01002918
VERSION     KCOD01002918.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 384)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 384)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..384
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="324561pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>384
                     /note="ultra-conserved element locus uce-451"
BASE COUNT           89 a          121 c           79 g           95 t
ORIGIN      
        1 ccaaacatca taaccatggg accaggtttt cctcctcatc tgacagcaac ttgttcttct
       61 gcagagcggt gggtgccacg tccgtaggtt cagcgatgat atgttacctt gcgagctcct
      121 gctcccacgg tggctgctct atagagggct tcattgctgt ggcactcatc taaaaagggg
      181 gaggatgtct acagagcaca cattaatatg cggcacataa ccacgtctct gaatgccagc
      241 cttccattct tcattaaaca aaatggctgg attgcagtga ttgttttccc ctccagcgcg
      301 cacaggcaca cacaccacgc acgcaggcac atacccacac accccccaca cacactctgg
      361 ctctctctct ttttctccct catg
//
LOCUS       KCOD01002919             845 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 324667pyr ultra-conserved element
            locus uce-1003, sequence.
ACCESSION   KCOD01002919
VERSION     KCOD01002919.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 845)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 845)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..845
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="324667pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>845
                     /note="ultra-conserved element locus uce-1003"
BASE COUNT          249 a          146 c          189 g          261 t
ORIGIN      
        1 aaaataaagc ctgaattgaa tacagattct aaagaaatca tatatttttc ttccattctt
       61 tttacagttg tacagaattt gcttggaaag cagttttaca tttattcact tctggtatca
      121 tttttaattt gcatcttgct gcttgatggc tccacttgat gggtacaata tgacaacagg
      181 taatagatac aataacagta aaacagtgat cattactgct gggactagaa acacccacta
      241 ttgcagcttt cctcagctgg aaagttttga catctgctgg tttgggacat agctgaacag
      301 ctgtcagcag tggggtagct gctttcagca gcagttggcg ggatggcagg gtgccagctt
      361 gtaccatctg tgcgcctgac atttcattct aattaacagt agggttaatt gttctggcag
      421 gctcaaatgt agtgtctaac attacccaag ggaaacatgt acaagtgcag gagtggcagg
      481 gagctgggga cagcgttgct aacaaaccta ttgagggaga atagttaaca actactgatg
      541 attttactag ctggccacat gcaataaggc tgaggtattt ttttattctg atgaattatg
      601 ccaagcctgt aatgatgtag aagaaatcaa gctttgaaag gctgagactg ctgccttggg
      661 gcaattgaga gggaacaatt tgcatgttat tactgcatat tcatacctaa ttgtgttagg
      721 ctttgctaat agagcagaat gacagtatga aaaatcgagc aactgcttta tagccaacaa
      781 agctagtgtt ttttccttag tgctgaatga tcatttagac atttagttgt tcaatatgac
      841 aagtc
//
LOCUS       KCOD01002920             671 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 324780pyr ultra-conserved element
            locus uce-5385, sequence.
ACCESSION   KCOD01002920
VERSION     KCOD01002920.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 671)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 671)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..671
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="324780pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>671
                     /note="ultra-conserved element locus uce-5385"
BASE COUNT          192 a          146 c          124 g          209 t
ORIGIN      
        1 tttaattttt actttgctac ttccttggag ttaatctgtt atgaaaaatt acttccctta
       61 tttattttta aataacggga gtacagagac tcccacacta cagccctgtg cggagaactg
      121 gctgggtatt tcatcacagc gctgagagcc tgaacgtctg ctaacaggca gttttccagc
      181 tcactggcac aggcacaagt gaaagcagca cattcatttt gtgcaatttg ctttaccttc
      241 ccacatggag ttggtgcatg taaaaggctg ttaagtacta aattattcct tatcaaatca
      301 ccatcatctg gagtcatgat caacactaat taaattactt tcactgaaca cggctccagc
      361 ctgctgcctc aactgcgagg tacattttat tttgcttact gtacagtcct agcaaggtac
      421 agggcacagt gctagaaggc atctgtgctg tagttttaat taaagtttac ttcaccttcc
      481 tcccagcttt ataagctagg gtaaagtgta tcaaatcaag taggttaaca ccttcacttc
      541 atttagggaa agcattacag accaaagtga tttgatatta gatctttatc ttaactacag
      601 ccagaaagac aatgtagctg taaaatttaa agccttcctc gggcagagtc accatgctaa
      661 gctttatctg t
//
LOCUS       KCOD01002921             679 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 324888pyr ultra-conserved element
            locus uce-7724, sequence.
ACCESSION   KCOD01002921
VERSION     KCOD01002921.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 679)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 679)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..679
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="324888pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>679
                     /note="ultra-conserved element locus uce-7724"
BASE COUNT          221 a          119 c          159 g          180 t
ORIGIN      
        1 cagtttatgt atcctttcca tcctgacaga tgtgacaata gctggaaaca ctgcgcctgc
       61 caagagcttt tatcaagtat gttataacaa ctagtaataa gtgtaaataa taaatggcta
      121 cgatcttatg ggaaacggtg gcaatactaa acaatttttg gtgcttgctg atgggaatct
      181 gctagtcctg gaattccctg gcttcccagt agagttttgg cctgacaata aacaacagtt
      241 taatacttta tctaatccca gccaggaggt aagttcaaca gcaagctttt gcagatgttc
      301 acatccaata atctattcat aattgatgaa acagggaggt cagatgtaat ggttgctact
      361 attccagcaa caaataaatg gttattgaca aaacaaggca gtgtggcgct gagtgctgag
      421 cagtgacaag catgaaacag tgctgagaca gaagtagtga tgtgaataca gcccttcatc
      481 tcctctatgt gatgtgtggc acgagggcca ctctgacata taagcagatg gaggtgactt
      541 gtaaaggaaa aatgagattc tgcaagtaca taaaagacaa atgcagagcc aggggaagaa
      601 aaaaagggtg gacaggataa gtgcaataat gcgaattgtt aagaaatgtt ctctgtgatc
      661 cagatgtctg gactgcttt
//
LOCUS       KCOD01002922             642 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 324993pyr ultra-conserved element
            locus uce-1062, sequence.
ACCESSION   KCOD01002922
VERSION     KCOD01002922.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 642)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 642)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..642
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="324993pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>642
                     /note="ultra-conserved element locus uce-1062"
BASE COUNT          188 a          174 c          111 g          169 t
ORIGIN      
        1 aaaaccagcg agagagggaa attaactaag aaatatgcag ccttgatgtc gattcactaa
       61 agaatattta ttgtcctctc ccgcgtcttg cttgctctcc tagcaaatat aatactgtct
      121 ctctcatgcc ctttctctgt ctcaccagct ctgtctctgc ctctctgata ccaactctga
      181 caaaccgtgc gattctgatg gaaaattcat tagtcgtcct ttttcttccc cattttccca
      241 gtcagcttcg cgcctgatct gtcagcctct tccatcctga ttatctggag acgccaattt
      301 caaagagaca tcttaatagt gatgtcaacg aattaattag atgtgttaat gagctaaaag
      361 caacccaaat taaattaatg cagtaataag cacagacagc aaaattagct ccaatttctg
      421 taaatgattc tgaactgtac acaacatctc atcctgctag agcattacca tcccccaaag
      481 ctaatcaaga actccagtgc aattaactgc tgaattacaa aacacacaca cagctcatag
      541 atccagcagc aggaggggtg cgctgggctg cggagcgagc ggggaaattc tctgctacaa
      601 acccaccctg ccacagaggc tctgcccccc aagctcctca aa
//
LOCUS       KCOD01002923             451 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 325101pyr ultra-conserved element
            locus uce-3312, sequence.
ACCESSION   KCOD01002923
VERSION     KCOD01002923.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 451)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 451)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..451
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="325101pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>451
                     /note="ultra-conserved element locus uce-3312"
BASE COUNT          112 a          128 c           90 g          121 t
ORIGIN      
        1 tagagaaaac tgcctaacac ttaaattccc cagagtaact gttcatgatc acaaatttgg
       61 ctaaaggatt tttttcatta ccctcaaaca tttcctttca cctccaacct ctaggcagag
      121 ccatcgcttt ccctttagac cagggaacat aaagccatgg ggccatcggg gctggctgtg
      181 cctgaccccg agggcccttc tgtcaatcac tgcctcccca tcccttgctc tctttcacac
      241 caggcagctg tacccatcgc tgtcaaccag gtaacaacca gcaaacaata gaggcctgaa
      301 tgcctggtct agacactctt ttagccactt atttgctgct cttggcagct gttgaagcat
      361 aaataagcag tttgtaatca gaaagctgac atcattgcag ctcagctgag agggggaatt
      421 gttgctgtgc actgagctgc tttcctccct t
//
LOCUS       KCOD01002924             514 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 325211pyr ultra-conserved element
            locus uce-7494, sequence.
ACCESSION   KCOD01002924
VERSION     KCOD01002924.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 514)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 514)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="325211pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>514
                     /note="ultra-conserved element locus uce-7494"
BASE COUNT          165 a           81 c          113 g          155 t
ORIGIN      
        1 ttctaatcat ttggggaggg gtaacattaa tcttaatgtg taaagtgatc cagttccgaa
       61 atgatagatt gtttagaagc tgactgaaat tcttctgtag aaactctgtg atcatagggg
      121 tcctcaggtg cactgaggca ctgaaaagcc agttttccct gacacatagg cctttttatc
      181 atcaggatga ggtagtggtc gtattttaat taaaatgtca gaacaaatac tgttggagtt
      241 attgaaaatg aatcaccaga taaagtgagc actgggccat ggcaggtcaa agaggcaaag
      301 tcacctggag aagaggactc cattcatttt cctgcctaaa tgaggaagaa gttactttta
      361 tgagcaatgt gaacttttaa atatattaaa gagcatcttg ccctgtatta aggctcagac
      421 tttcacaggc tgatgaattt aatttatatt tgaaactgtt cagtatgggt agcccctaaa
      481 ctatttgaca gttataaaaa gatactgaag gaat
//
LOCUS       KCOD01002925             763 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 325321pyr ultra-conserved element
            locus uce-2104, sequence.
ACCESSION   KCOD01002925
VERSION     KCOD01002925.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 763)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 763)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..763
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="325321pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>763
                     /note="ultra-conserved element locus uce-2104"
BASE COUNT          203 a          172 c          165 g          223 t
ORIGIN      
        1 ttttccttta aggagaagtt aaaacaccct cctgcagttt tatcatcacc ttaatgcaag
       61 aatcatattg ggctgcatag ctccagttat gcacaagtac catgctaaat gttaagatgt
      121 gagacataat tcatatctcc cgtaattcat ttcattctgc aggcttctga ctttccaggc
      181 tgcaaattct ctctctttct ttctcctatt gaccacttgt taaatctttt tgtttgtttc
      241 ccacctttcc cctgggaccc acagacagac agccttgcca gattcatttt ctgatcaaag
      301 ctgtttgatt tggtcaattt tgccacattg gagacgttct ctattacaga gataaatagc
      361 cttgggctaa ctgtcaacga aaacttgtaa gctaataaat tattccaatt tcttcctgcg
      421 gatttctctg gagacagccc taggaaatac actttttgat tagtaaattt ctctgtgtgt
      481 gtgtctggac attcaaatgt gtcgactttg attagcacca ttgcttttca agtagacgct
      541 ggctgagggg ctgtcagttg ccggcagccc tgatgcataa tgcatcaact gggcccggaa
      601 acaggagcct catccaaggc tggaaaggcg ggaaaattgc cccaactttg cacggtggga
      661 gcaatctgag ttgcaaagac ttaggagagc agaggagctc caggggagga aaatcagtag
      721 gagcaaagaa gggcaaggac agagccaggc aacttgctgc cac
//
LOCUS       KCOD01002926             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 325429pyr ultra-conserved element
            locus uce-6998, sequence.
ACCESSION   KCOD01002926
VERSION     KCOD01002926.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="325429pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-6998"
BASE COUNT          214 a          133 c          100 g          187 t
ORIGIN      
        1 ctaacaagat aataagtcct aatttttaag ttgccaacat agcgtatgca atacttgcct
       61 ttcaaattac aaattagagt gtagggataa ttaaaacatg aacaaaatgc agtgcatctg
      121 tcagagcatc ctctcttaca ggtaacaacc tgtctaacat ctctttaagg aacataacta
      181 gcttccagag gtctaaagtc aaatacattg acttaaaaag tcgctttaga gcaaaccgca
      241 gagctctcta cttggcaatt taaatgactg accattcaat ttatgagcat tctcagcaat
      301 aaaattcagc ttgaacttaa taatagcaca ttttatgtga caacgatgac aattataatc
      361 tatagttacc gcagtcatcc tttggtctag gggaagatga cactattaat tacacacact
      421 tgccattttt cagacttaac ttggcaggcg attgagctct gaaccatctt cagcttgact
      481 tctacatttt ccattttcta atccactgga acgaagataa ttagaacaga gaaaaatgag
      541 aggctttcct gacttgttta aaccaaacct ctaccacgtt agtggcatat tcagtaacac
      601 cacagtcaca ttaaggctgt gccacttcag ttaa
//
LOCUS       KCOD01002927             528 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 325532pyr ultra-conserved element
            locus uce-1349, sequence.
ACCESSION   KCOD01002927
VERSION     KCOD01002927.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 528)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 528)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..528
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="325532pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>528
                     /note="ultra-conserved element locus uce-1349"
BASE COUNT          155 a          114 c          123 g          136 t
ORIGIN      
        1 tatacataca caggcacctt ggtttggctg tctcatgccc gcaggccaca gtcacattat
       61 catctggaaa ttggataatg acagcacaat gacaaatcca ggttgcctgc aataaggtgc
      121 taatcccttt gctttaatat cggagcagcg tgtaatgatg tttggacatc actccagttt
      181 actgacgacc ccactggggc cggcaataga agcgtacaac tgtctaacaa gccatcaggt
      241 gaccgccgtc gtcaaagcaa cgggggatgc aatctaatct tccctccatc ccttccagct
      301 cccaataagg accagattat agaagtggcc catcaatgct tggtaactcg aatcaattaa
      361 cgttaattcg cacaatgcta tgatgtattg tgatcacttt catttcggag aagggggaag
      421 aaattgctat aattcaccta aaatgaggtt gtctatggtg ctgaggtatt aattgggtgt
      481 ccatattaaa tggaaaagga gcacggtagt gaaggaaaag tggatgag
//
LOCUS       KCOD01002928             815 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 325641pyr ultra-conserved element
            locus uce-2611, sequence.
ACCESSION   KCOD01002928
VERSION     KCOD01002928.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 815)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 815)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..815
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="325641pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>815
                     /note="ultra-conserved element locus uce-2611"
BASE COUNT          217 a          206 c          174 g          218 t
ORIGIN      
        1 attttctgtg gtaaattagc caagtgttcg cctatacagg ggatacttgg gcatctgggg
       61 gattttcata actgaagact tgtgctgtat cacaacaaat taggcgtaat taaacactct
      121 gttcagtgtc tattgttaat tgcagcagct aatttggtgc ttagttagtg ttacgttccg
      181 aactatttcc aagcacgcag aattctaaga ctgcttgctt attttttcac ccccgtttga
      241 cagattttag ctcatttatt acttttgtta aacgatcaga aattcccttg ccaagacagt
      301 actttgaggt ccttcacttt caccaagtca gacactaaat cataggggac aattatcagc
      361 aaatgctctc cgacaggccc taagcctgct gaggtaatgc agctgacaaa ctttgatgcg
      421 ccatgcccgt gcacattatg ttcacgtagt gtgtacatct gggcaccctt tatggcgatg
      481 cagcaaacag ccaatcattt attccactct aattagcaca catgtaaatc ctcaccaatc
      541 aagccactca cagggttacc gttgtggcag ccatacagca agctggcagg acatgggaag
      601 aaagtacaag aagcaactat tgggtttgat ttgaacctgc catcacacca cggcaggagt
      661 cctgactgta accagctctc cccttcacaa cccatcatcg agctccacgc gaaaaaggtc
      721 atcgggcaga ctgccgcccg gccaagatgc ttggattctt tgcaggctct gggagcacac
      781 ctgaagcgac gcgcggctct gatagctcac agcgc
//
LOCUS       KCOD01002929             677 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 325754pyr ultra-conserved element
            locus uce-1748, sequence.
ACCESSION   KCOD01002929
VERSION     KCOD01002929.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 677)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 677)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..677
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="325754pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>677
                     /note="ultra-conserved element locus uce-1748"
BASE COUNT          218 a          123 c          108 g          228 t
ORIGIN      
        1 aatcacaaga tgtccaaaaa gaatgtttat aaaataattt gcattactta tgatttgtgc
       61 ctgtgcaaga gagaacacat ccatatttag tctagggggt aggcgttatt attggctcaa
      121 ttccacacat accaaatgtg aatacttatg ttcttcccac aaatttcttc acattagact
      181 ttattctttt accaggttcc agatagcaga cagctcttgt ttttcactta tgttttcctt
      241 ttaacaacag tcattaattt actgatacgc tgtctatcag aaccacatca tcttgattag
      301 agctgttatc ctaatcaaaa ggctgataat taagactatc catctgtaga gttccaagtg
      361 ctaagatgag ctgaagatcc taattaagat tatttaggtg ttacttaaat gccatcattt
      421 gattcagcta atcataccag caggtacatt agatttgcat taatgttctg ctgaagccag
      481 cagctcttta aacagatcaa aaatgtagat tacaggcacc attttcaaac atctttatat
      541 cactataaca ctgagacaat gcattaaagt aaaattggaa gaaagacgat ttcagtgttt
      601 ctaagtctgc tttatgataa tcagtagggt aagtaattca tttacttgcg tgtcatagca
      661 gctccaagct taagttt
//
LOCUS       KCOD01002930             748 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 325864pyr ultra-conserved element
            locus uce-6754, sequence.
ACCESSION   KCOD01002930
VERSION     KCOD01002930.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 748)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 748)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..748
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="325864pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>748
                     /note="ultra-conserved element locus uce-6754"
BASE COUNT          223 a          152 c          160 g          213 t
ORIGIN      
        1 cccaggaaga tcagaaatat tttgttttaa ttgttgagga taaattacag caacacaaag
       61 agcatcctgc tcactccatg tgcatctcct gctatttggt cagcacaggt ccacagttcc
      121 atttttaaat caaattatgc ttgtgataat attgtcttga gcttacagtt gctgacatgg
      181 atattgacaa aggcttagcc agtattttaa taagaaaaca aaatacagga aatactctag
      241 agtttccagg tggatcatta acaagacgcc ttggagggct gagactgcca gccagcacag
      301 ggaatgcatc acagttcgtc atacaactta aacttctttt gacatctagt tatgtcgaaa
      361 tgtgactgat cacctagggg tccaggctcc tgtgagggaa aagttcactg acagacagcg
      421 aacgaagctg atcttaaatg agaatcaaga gaaagcagca ttccagcgtc tgacagtctg
      481 cagctgctac ctgggtctgc ctaacgaaga cgagcctgct ctgctgaaca gttatattag
      541 catctgtatg cttctgtctc attatcacac atctgcccac ctttattcga atgaagcttc
      601 ttctgatctg acagctcagg cattgtcagt gaatagatat tatgggagcc gggtacagca
      661 gcttagggtg ttagctttta ttttctaaag actgttgtac agtttgacag tataatgcca
      721 cggaggtaaa gaagataatt aacatatt
//
LOCUS       KCOD01002931             661 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 325971pyr ultra-conserved element
            locus uce-6484, sequence.
ACCESSION   KCOD01002931
VERSION     KCOD01002931.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 661)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 661)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..661
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="325971pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>661
                     /note="ultra-conserved element locus uce-6484"
BASE COUNT          223 a          115 c          112 g          211 t
ORIGIN      
        1 tcctacttaa attgaaatgc tttcattgac acttttttga tgtaaatata accggctgct
       61 tttggcaaac ataagaactt tttgaaacat tttttaaatg tatgcatttc ccttccttgt
      121 agccaataaa atataaatag cattttcaca gtgacgaatg acacgtagta cagtattcta
      181 tgatcatggt tccaggattt tatttctttt agctttgtat acattaatta agtatacaca
      241 atcagggttg agtgcagaga cagctaaata aacaaatgac actgtagaaa ggtctttctg
      301 catactaatc atatcctaca tctgcaagca aaagctctat aaatcgattt gctctttcac
      361 atcaaaagac aaacagtgag gcaagtcagc agttcctttg tcaaagtcac agagattgct
      421 gttcttcaca aatgcatttc tacagagctg aattcaacca tttgatgatt agcattattg
      481 gcaactcttc aaagaagatt catcaagtaa tttgcaattg gattggttgc catttttgtg
      541 attctacccc atgaaattga acaaaaaatg attgacattt gaattcttac ttggaggaca
      601 aagtgaacta gcataagaaa aagaagcaaa cagattccca agaggttggg aagctgctgt
      661 g
//
LOCUS       KCOD01002932             347 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 326069pyr ultra-conserved element
            locus uce-4671, sequence.
ACCESSION   KCOD01002932
VERSION     KCOD01002932.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 347)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 347)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..347
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="326069pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>347
                     /note="ultra-conserved element locus uce-4671"
BASE COUNT          144 a           64 c           66 g           73 t
ORIGIN      
        1 tagtaaaaaa aaaagcaaag aacatcccat gccatgaagg aaatactgag aaacaaaaat
       61 gggatagtta ctactactgt gatctttgcc tagacatagt cgtttcaagg tggaccctac
      121 aaggtaaaac aatacaagac acacagaatt aggtaagact aaacacaaca aatcggacgg
      181 acaagcttct gtatttttaa gcaatcaaaa agtagttatt atgcaagaaa ggacagacaa
      241 agtcagcagt tcaggtgagt aaaggaagcc taaataactg gacagctcaa acctttctta
      301 atgtgcagcc attcaaaagc tttggaaagt accacagcat gccaaaa
//
LOCUS       KCOD01002933             591 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 326172pyr ultra-conserved element
            locus uce-1098, sequence.
ACCESSION   KCOD01002933
VERSION     KCOD01002933.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 591)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 591)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..591
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="326172pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>591
                     /note="ultra-conserved element locus uce-1098"
BASE COUNT          193 a          106 c          118 g          174 t
ORIGIN      
        1 attttgattc aatcagaatc cctaaatctg acaacctata atcaaacaaa gggagtacac
       61 tagtaggtgg ggattaacag aagggaatta aactgtcatt ttgcaacagt ttagaccaat
      121 atgaaagccc atttatgagt ctctcagtaa atatcccttt tgttttgtct aattgctagt
      181 ttgaatgtat cagactcatc aatgggatta gggttaatag atgtttggtc acgcataaca
      241 tgcagaggag gaatctgata cacacacaca caaaaattgc acttaatgag cttagcaaat
      301 gtttgccata tttttaatga accctggggc tgtcatttag aaatgcttag caactgcttt
      361 tccatccttg aaaatagaac aactgaagga cattaacact atgtacacca taaacaatgt
      421 gagctattta aagataccaa ctgggaggtg ggaatgatga cattttctgt gcaggagcca
      481 gtgatactta acacttcatg tgtgtgttag atctctcaca tcccagacgg gcatctctag
      541 tttcctacag ggaatgagtg tgagtgtttg aaggagatca aataactcca t
//
LOCUS       KCOD01002934             551 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 326279pyr ultra-conserved element
            locus uce-5307, sequence.
ACCESSION   KCOD01002934
VERSION     KCOD01002934.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 551)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 551)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..551
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="326279pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>551
                     /note="ultra-conserved element locus uce-5307"
BASE COUNT          178 a           80 c          109 g          184 t
ORIGIN      
        1 gtaatttctg tcctttgcta taagtaactg gctattctgg tcacagttgc cagaagtggg
       61 taggtttgtg ttcatgaata agagaaaaca tttgtttctc atatgatcat tgtgtttgca
      121 tcaacctgaa aaatagtaaa aggaaaggga tgataacctt tcaaataata taattgatca
      181 tttggcagac aaagttgtga acattagtca tagaaacctg cagatagtag aggcttaata
      241 tcaaagctaa tgatttattt tatgttaatg actttctgct agggcataaa agactgctca
      301 taatggactc tcagtgcttc agttgtgaag gctaatggga taatcttacc caaaattaag
      361 ctttttgaag taaatcatgg tgtttttttt caagttaaca aatgtattgt cagattgatt
      421 ctttaagaac tgctcgtagt ctttatagga aaatataagg caccttcacc agcagttttg
      481 tttgtgttgg aaatgcctaa aaataatatt cgagatgtgg aagtcattca gtcacctcaa
      541 ccatagggca a
//
LOCUS       KCOD01002935             304 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 326386pyr ultra-conserved element
            locus uce-2817, sequence.
ACCESSION   KCOD01002935
VERSION     KCOD01002935.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 304)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 304)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..304
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="326386pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>304
                     /note="ultra-conserved element locus uce-2817"
BASE COUNT           92 a           55 c           58 g           99 t
ORIGIN      
        1 ctccatttgc tcccaaagaa tacgcttaaa cactcaatca atgaataacc tacagcagtt
       61 tgttgtagat tcaataatgg ggaatggtgc attgtagcag gatagtcaga tatacccata
      121 ggaagtgtca gtggtcaaaa tgcttccatt gccagaaggt agtctgaaaa tggtctagaa
      181 attcaatacg gcattgaccc tacattgtat acatgatctg cagtctgttt ctcaatctta
      241 tttgaagcag ccattttaat ttatattctg gatttctttc tctaaagctg taagtttgag
      301 gtat
//
LOCUS       KCOD01002936             718 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 326498pyr ultra-conserved element
            locus uce-2432, sequence.
ACCESSION   KCOD01002936
VERSION     KCOD01002936.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 718)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="326498pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>718
                     /note="ultra-conserved element locus uce-2432"
BASE COUNT          212 a          138 c          130 g          238 t
ORIGIN      
        1 atgtggcaga ggttggccta gattccagct ggatgtcaaa agaagacaaa atgtttcctt
       61 gaaaaaatgg ggcaagtgtc agtccattat gatttagcat ttgggatcct attttctttt
      121 agtcatggga aaattaattg taaatacact aacaattgat ccataaacct ttactgagtg
      181 ccttgcacgt gaacaggatt agtatcttct gaaatccact gccattccca gagctcaaga
      241 gaggtgtttt gctcttgaaa atctaacaac cagttttgca atgtcaccaa tttttttcaa
      301 tcatccaaat accaccaatt caattaagct cataaacttc ctacccatag ttctccagga
      361 taagcagctc catttaaaag tgaatgcgga cgagcttgtg ctgtccatgt gaaatattgt
      421 tcaatcaaca gccaaagttt tacttgtcag ttttgatata tccgataata gctgtaggtt
      481 gttttgcaat gtccaatgtt ctgtgaagat gggcttttca tattctttat tgtttttttc
      541 tgacaaaatg ttgcctggac ttttgcagtt ttgtgaaatg aaacaacagt aaaaacaata
      601 tataatttaa ccctcataga cctagctgga ctgcagataa gcatctttcc caggcttatg
      661 gctagttttg gccaggatat aatgagttcc tgttcattga tcccttataa gcatcctc
//
LOCUS       KCOD01002937             534 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 326606pyr ultra-conserved element
            locus uce-7410, sequence.
ACCESSION   KCOD01002937
VERSION     KCOD01002937.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 534)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 534)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..534
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="326606pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>534
                     /note="ultra-conserved element locus uce-7410"
BASE COUNT          154 a          117 c          125 g          138 t
ORIGIN      
        1 cagcctcagc acagacaccc tgagaccttg tccacatggt gctctcactg gaccacactg
       61 tacctcttct tgtctccata tcctaataat cattccagga tcaaaaccta ctttctaata
      121 tccagctttg gttgatgatg atgtatgaag cagagaggaa aaagacagct tgattttcat
      181 aggctaggtg ttgaccctgc tgggcttagt gtagcatgaa actagttttg actagtaaac
      241 tgaataaata taccagggaa gctgtagagg ggcaatatat atgcaacact aaggtgctgt
      301 ttttgcaaaa tgactttgat tcatcagagg gctaggctga tgcccagtgc attagaaatc
      361 ctgtgaacag ggaaatattt aaattcataa tctgtttgca ggaaacagct tcctcctcta
      421 cttcaaaatg tggagccatt tggcagagca gctcagggca aaacccgtgg gacatggtgc
      481 tgccaggtag cccaagggat gcagcaagga ggtgaacaaa ggcctccctg ctgc
//
LOCUS       KCOD01002938             569 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 326715pyr ultra-conserved element
            locus uce-5779, sequence.
ACCESSION   KCOD01002938
VERSION     KCOD01002938.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 569)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 569)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..569
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="326715pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>569
                     /note="ultra-conserved element locus uce-5779"
BASE COUNT          190 a           93 c           93 g          193 t
ORIGIN      
        1 aagatacctg aatttgaata cataagtgaa accaatcttt agttacttgt atttaatcta
       61 gaatctataa acatgcacaa tatctctcag cttgctatat ttaacaaaaa tctctgttgc
      121 aggttactta gttatagaaa atccatcaag taagtttatt aaagatgtgt tcatcgatga
      181 gtctcaatgg gtggttccct cctctatgtt tattagttcc aagctgcgta taaatcataa
      241 aagcatgact aattgcatgg taactggaga aatgctttct ctctctctgg ggtgaagcct
      301 gcatgtctgt gttttagctt gggaagtaat acagggttat ttaacctcct caggatttaa
      361 aaaccatgtc attatgagaa tgaggtcact gcaatatttt attgtctaaa accttgcaaa
      421 gtataaaatg ttttctgtgt gacaaagaag tattatgtac cttagaatgc aacaataagt
      481 tcacaaattt actttaatgt caaaaccttg ccttgaaatg cataaaaaca atcatagcct
      541 acagtactgt taacattaaa aattttgtg
//
LOCUS       KCOD01002939             327 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 326823pyr ultra-conserved element
            locus uce-117, sequence.
ACCESSION   KCOD01002939
VERSION     KCOD01002939.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 327)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 327)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..327
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="326823pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>327
                     /note="ultra-conserved element locus uce-117"
BASE COUNT          115 a           59 c           57 g           96 t
ORIGIN      
        1 ctgctcagtg gaaggggcaa gggctgcaac aacttattta cacaactatc taaatacgat
       61 taaacagctg atggacaaat attaaactgg aaaatgtata gtcatttcag cttaatgtaa
      121 tcccctttct gtaaacaccc aagatgattt tttttcaacc agaacagtcc tgacatctca
      181 taagcctaag ggtgaatagc aagagattgt ttttgatagt tataaatatt caaaagacat
      241 gcagaccatc tgctttcata atacaggtaa agcaagactg aaatggtgac tgctgtataa
      301 aaatggttct tttaacaaag tcttcct
//
LOCUS       KCOD01002940             761 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 326933pyr ultra-conserved element
            locus uce-2444, sequence.
ACCESSION   KCOD01002940
VERSION     KCOD01002940.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 761)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 761)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..761
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="326933pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>761
                     /note="ultra-conserved element locus uce-2444"
BASE COUNT          217 a          154 c          158 g          232 t
ORIGIN      
        1 ttccatgtgg gaacatcatc aggaaggagg ggttgttagg aaaattattc tgatcatcaa
       61 agtttatttg aggtacaaat gcaattttaa gtgtaacagg ctgtcatgtt aagctccctg
      121 tccactgtga ggaaatcacc gttatggctt tcatatggga aggaattcag gagtgccttg
      181 tttacattgc taccatttat caaacattta aagcagctat tctgctgaat aaacattcaa
      241 gagcctgaag gataagcata ttgcttaaac ttcttaagac taaactttcc aagccatttc
      301 ctgccagagg gacctagcag taaaattgca aactctgtgc tccaagatga gataggcaga
      361 attagattaa gcagcttact gttgacatgt ctattgatct gggttcagtg ccgtttcctg
      421 tctctgctag cagttagatt gctgtataca ataacacagt ggcctggttt atgtgaaact
      481 gggggactcc gagcatcaat tactccagga aagcagtggc actgggagat aaggttaagc
      541 cgctcacagt gtttaagact gctgaaaccc aagcaacata tttgctgtct aaattgctgc
      601 ttataaattt gacagagttc catttatgtt gttccccctc tccaaagaga gatcatcccg
      661 tattattctc tgcaggtagc agtttggttc tcattataaa cacgcattgt tcgttagcct
      721 tcacttccta tcagcccttt gttaaaagtt ccaaagcatc a
//
LOCUS       KCOD01002941             703 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 327045pyr ultra-conserved element
            locus uce-6169, sequence.
ACCESSION   KCOD01002941
VERSION     KCOD01002941.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 703)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 703)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..703
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="327045pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>703
                     /note="ultra-conserved element locus uce-6169"
BASE COUNT          195 a          145 c          177 g          186 t
ORIGIN      
        1 atcagttctg ctgagagtgt gtttggcagc agccagacag gttccctcaa ccggcacgag
       61 gccggcatca gcgctgctcc tgctaggaat tcgatgaggc atctccccat agctggtcca
      121 aaggttgtga tgtccaagat ttatcttggt aattttagtg ccggcccatt ggaaattgct
      181 gctggtcaaa gctttccaat gggatgtgag ccacactcag tcgtcatagc tgagttattt
      241 tgttactcag ctatgcagaa gcagcaggcc tttaggctaa ttaataaatc atcaacgcat
      301 ttgtggtgtg aaaaatgaaa tatttatgct tgccagagta atgtttctgt cttgcagccc
      361 catgctctgt tgatgcctga tggaggatga agtaaatacc agctggtgca gaatgagcag
      421 aatataatta ctttctacaa agttaactga atattaaaaa tagaattcag agaatatata
      481 gatacatgcc tgtgaggcag gacacagcca atacatgaag ggaacacttg cctaaccggt
      541 gccgtggggc taggaaacct gcaggatcca tattgtgtac aaatgtgtca cacagaggcc
      601 ttttcacaga gcagttagtg gccagctgga gtagttaaaa ggcctgaagg gaagccaagc
      661 atgctctcct tttctggtcg gtcatcatta ggggaccagt gaa
//
LOCUS       KCOD01002942             724 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 327155pyr ultra-conserved element
            locus uce-8032, sequence.
ACCESSION   KCOD01002942
VERSION     KCOD01002942.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 724)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 724)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..724
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="327155pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>724
                     /note="ultra-conserved element locus uce-8032"
BASE COUNT          194 a          168 c          147 g          215 t
ORIGIN      
        1 aaaaaagacc aggtgcattt aaagatctac agacaaaagc tgccagacac agcaacactt
       61 cattcaccat tctgaaatgc atttttgtca gcctgcttga agggctgcag ggcaccacac
      121 tatgaagagt tgaatggcaa tttttaacag catgggctta ggaagggcag taggaaacac
      181 acaaacggaa tgttttaaaa caacaaggtt atgcatggcc taaggaactc tttgtctaga
      241 ctaggctaca cactggggta ggtacctctt ctttatcagc ctcaatttcc tggtacaaca
      301 atccatatct ccggttagca atttcatctt cagataaatc tgagttgttg gtctcattgt
      361 ctttaggact agttgaactc tcggtgctag catttctgga atttcccatt tgaaacagag
      421 acaagggcct agctatctcc ttgctcggtc caggattgct aatgcctgcc tgctccccag
      481 gcaaaccttt ttttactggt gtttcctgaa ttatgtggct tgtgcttgca cctacttctc
      541 cccagctgtt atcagtagct cctaggtctt ctgtagacca tttattacta atgcctaacc
      601 aaacattttc catgttaccg tcctctgagt tttgctgctt ggggaaaaag ggccaattat
      661 ccattccatt ggcttggcta tctgacagac tagaaaaacc ccaggaatca ttagtaactg
      721 ttgg
//
LOCUS       KCOD01002943             512 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 327264pyr ultra-conserved element
            locus uce-4724, sequence.
ACCESSION   KCOD01002943
VERSION     KCOD01002943.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 512)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 512)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="327264pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>512
                     /note="ultra-conserved element locus uce-4724"
BASE COUNT          174 a           91 c           88 g          159 t
ORIGIN      
        1 ccctattggt agagttttta ataggataca tacctttaaa agccaaaatg accagtaaaa
       61 ttaggttgta catcattttc tgggaaaaag gaaaaacagc ctcgacaggt gtaatttatc
      121 atttttctga tttaatacca aagaaatata ttaaaataat aaaaagaatc ctgaaatcct
      181 caaaatttgt agtgataaat agccctccct gtctttattg cattatgcct actaacagaa
      241 atattgcatg gtggatttcg ccagacaagg acgattattt tccaataaaa agttgcatat
      301 taaattccag cacaaaagtg ggtgtctaat acttttgaaa tcttttatgg tttgccaggg
      361 aacacaattt taaacttaac taatacaagc tcacggtgaa gtggagcagc attaaagctg
      421 ggcacaagcc ctctaagcag cagagccact attctcagag ttcctttgga atcatttttg
      481 gggtattttt tcagctaaac ttcactctgc tg
//
LOCUS       KCOD01002944             682 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 327376pyr ultra-conserved element
            locus uce-491, sequence.
ACCESSION   KCOD01002944
VERSION     KCOD01002944.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 682)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 682)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..682
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="327376pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>682
                     /note="ultra-conserved element locus uce-491"
BASE COUNT          221 a          130 c          116 g          215 t
ORIGIN      
        1 cagacctgtt gtcctcttac aagctgcaaa ttacacaggc aaatgtaatt acccattctc
       61 tttgttatta gtgtgcagtt ggaagcttca agcaatcgtc cctatttcaa agcttactcg
      121 caagatgcat ccttgatatt gaacacaatg agattttttt ttttaaattc aattaaacat
      181 ttgcctactg tgactcttta ttcactgcaa attgtctctg taaataatct tcatcaaaag
      241 tcagaaccaa tccccattag ttgtttagat taattaatga gtccccctgg agccacccaa
      301 atgaattcaa tttaaacgtc aacaacttgg ctatggagtt tcccaggttg gcattaagac
      361 aatattaaac ctgcaataag tcacatttaa aatgttaatt caaagaagct ctccatttag
      421 agcatttaat taaatcctta aataaactgc atgggctcaa taccagatgg ttctgcattt
      481 tcattgcagc agagagcctt gaagtcattg agggaagtaa tattggaggc atggtgaaga
      541 taaccaggat atatagtgta ataaaatcta atcttgtttc cagcagggag attcagtgta
      601 tgtacacaac ctaggctaaa attgtaagtt aattacatta accccagtgt actctggtat
      661 ctgagcagcc agagatgaaa tt
//
LOCUS       KCOD01002945             754 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 327487pyr ultra-conserved element
            locus uce-680, sequence.
ACCESSION   KCOD01002945
VERSION     KCOD01002945.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 754)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 754)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..754
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="327487pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>754
                     /note="ultra-conserved element locus uce-680"
BASE COUNT          226 a          162 c          145 g          221 t
ORIGIN      
        1 gcttagaatg gctctcatgt ttttccttgc taccctggga ctggactgaa gttacattct
       61 atgtcaactt ccatgcaatt ttagtgctgc cttgggaatg tattatccca gggcataaaa
      121 ggttccacaa agggtaggtg aactccaatg ctgtttaagg aaatcagtga ataaattaca
      181 aaacctgtcc atttgcccgc cccttttaat cttactgtcg tattcaaact attgggcatg
      241 taactgaata tctcaactgt acctgaagaa ataatggagc gtgtctctgc agtaaaacag
      301 aacggcacta aactgatgag tttaacccag cagaaagagc ggctgtaaac atgacaaatg
      361 cctgctattg atttcaggtt taattactct gtgcagcact gacaaagccc atcagatgtt
      421 gttgtgaagt gtaaatggaa caaactacac ttcactgccc ataggaaact gatggtgtct
      481 gcagtttgca ttgtttactt tatcctccgt aaacttcagc cttgatcaaa ttaacaagtg
      541 ctactaccct ccaacaaact acaatgcagt atgattttaa agcaacagcc ttggaacaat
      601 agttctgcag catttcattg ataacaaatg tctggctaat gacagcagct gttgaacctt
      661 gtccagcatg gcatggcctc taaccaggct aggaagaatt tacactctct tgcacttctt
      721 cccattttgg gggaaagata ttctaataaa aatt
//
LOCUS       KCOD01002946             867 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 327597pyr ultra-conserved element
            locus uce-752, sequence.
ACCESSION   KCOD01002946
VERSION     KCOD01002946.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 867)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 867)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..867
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="327597pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>867
                     /note="ultra-conserved element locus uce-752"
BASE COUNT          260 a          156 c          119 g          332 t
ORIGIN      
        1 tagaatttaa tttgttttta ttaatctatc tacattttaa ttaatttaat atatagagtg
       61 tgctttgttg tgtaatccta gtttatagaa ctttttgtta ttggacactt ctccaattac
      121 atgtaaacat tttaggcaag attaaagtaa tttctattta cagttagtgg ctgtctgtac
      181 ccctgctgta gtagagatta taggatataa tatgctacac catatgttta aaggccaata
      241 atgcaacttc taatctcact ctggctaatc aagctgctca gattatttta catacatctt
      301 tggtttaggc cttgacatgc ccttgttttt ctttcttctc aaagctaaag ttcccctctt
      361 tgattagctg aaacatttgc atggtcacta cacatttttc attttataaa tcattatgca
      421 ttagcagtct tgatcgccta gcttgactaa tcctgatgaa ctgaaatcac agctgaaggt
      481 caaactccat cccactgcac attcatattc aaacaaatct gcaccattgt tcattagact
      541 tctaaaatca ttgaaaagaa gttactgaat atcttaccct tattctttat gttttccaaa
      601 actttatcta taatgcttaa cagatgataa tagcagaata atgtcaaaat caatacaggc
      661 ttggagtgct taattttatt ggaagttgta caacctagat cttaatcaat acacgcgtca
      721 gagtatttct gttgtttcac tgattatttt gctttgttca tttaaacaac ccctattatt
      781 gcatatctta aatgcaacaa cttttattat aattatgact tgggtctatt ctgcataaag
      841 catgctgtcc agttttacat tgttaag
//
LOCUS       KCOD01002947             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 327705pyr ultra-conserved element
            locus uce-3869, sequence.
ACCESSION   KCOD01002947
VERSION     KCOD01002947.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="327705pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-3869"
BASE COUNT          149 a          123 c          111 g          219 t
ORIGIN      
        1 ccccctcccc ttttccagaa gaaatagacc tgttttttgt gattagatac cagtttgaag
       61 taattttgtt cttgttttgt tttatgtgtc cactcttttg accaatttat aaggtgtgtt
      121 ttatattgat tttgtttgat aaaaactttt acaaacaact gcatagatct aattcttttc
      181 agatcttata tatatcttct gaaaatattc accatccccc tttctttggc ctctcttttt
      241 agtcttttct tctgtctcct atcttcttct taggccatgt ttgccagcta cgtccctgaa
      301 atcatagagt taataggaaa ccgcaagaaa tatggtggtt cctatagtgc ggttagtgga
      361 agaaagtaag tatcccagga ggctctgctg cctctgctgc agtagaacac tctctgcatg
      421 ccattttctt tttttttttt gtgtttttgt ttcatgcatg taggcaatgt ttgctcgcta
      481 cgtgccagaa attgctgctc tcatccttaa tcggaagaaa tacggcggaa cttttaactc
      541 aacccgaggc agaaagtaag tccaaaaaga ccaggtgtgg aaagagcccc tgaaggtggt
      601 aa
//
LOCUS       KCOD01002948             498 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 327814pyr ultra-conserved element
            locus uce-5075, sequence.
ACCESSION   KCOD01002948
VERSION     KCOD01002948.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 498)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 498)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..498
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="327814pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>498
                     /note="ultra-conserved element locus uce-5075"
BASE COUNT          155 a          109 c           89 g          145 t
ORIGIN      
        1 ttttctttaa taaatcaaaa ttgaatataa ataacacttt gcaattatga gtgtttaaat
       61 tccaaatttt ttaggctaat cactttcaga aacaaacaag agactgaatt tatatcgcct
      121 gcagttgtta ttggaaaggt atgcccagag attgctaaat gaagtcagtc ccagtgcaat
      181 tatgatcact caagcatgct ttcaacgtat cgtgccaaat taggtagatt tgagcaattt
      241 gacttcctgt aacaaatctc gagggcactt ttgagaaagt acagactgtt tacaaacact
      301 ctcgggtttc ccgaggtccc gaggaaccgg ccagcggcag cgcccgagca cacacctgtc
      361 aaaccctgac agcgacctca ctccctcctc tgtgttaccc tttagcaatt taaaaaccaa
      421 aagaagtttt aattgccttg gactcagtct tttgaaaacc caaatgctgc aatctgttaa
      481 atgtaaatat tgtcggct
//
LOCUS       KCOD01002949             687 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 327926pyr ultra-conserved element
            locus uce-4456, sequence.
ACCESSION   KCOD01002949
VERSION     KCOD01002949.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 687)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 687)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..687
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="327926pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>687
                     /note="ultra-conserved element locus uce-4456"
BASE COUNT          182 a          129 c          128 g          248 t
ORIGIN      
        1 agaaaattat tttctatttt gcataaattt tttgcggttg cttttttccc ttctcgctgt
       61 gtcacattag acaccctggt tatcaaagtg atcgtatcac tatggtatgt ctcataatta
      121 cgatcaaact gttatctaac attcctggag cattcttttt ttcaatactt aatacctttt
      181 attccttggc ctcatgcatg aattatgctg tgtatgtgaa gaggcttaaa gtttgtttcc
      241 attacattct ttctgaatgg atcctgttgt atctaggatt ttttaaaagc caagtaggaa
      301 tgttattgtt gaccttgaca ccagataact gggcagacat tatatagcta tgtttgaatc
      361 ctcacaaaat gtgatgctaa agccaacaga atcctggcgc gagaccctcc tggacagcag
      421 agttatggag cttttcttta cagtaagttt ctttcttcaa ctttcgtagt ccagagggaa
      481 agcagctcct tcctgttcta aaactgtatt gttggactct tccttttgca gcaggtagga
      541 ctgattctgt tcacttcacc ttgcttattg aagcagaggg tactgaatat gtattttgcc
      601 tattaattgc tttaaattga tgacttttaa tactttgtac tcgtcaggca aaacgaagca
      661 cgatgagcaa tagaatcaga taaggtg
//
LOCUS       KCOD01002950             598 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 328036pyr ultra-conserved element
            locus uce-3488, sequence.
ACCESSION   KCOD01002950
VERSION     KCOD01002950.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 598)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 598)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..598
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="328036pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>598
                     /note="ultra-conserved element locus uce-3488"
BASE COUNT          169 a          163 c          102 g          164 t
ORIGIN      
        1 tgatagggag agtctttgcc acgtcccctt gctctgacac tgctagaatg gggcctgcta
       61 ccctcttaat taaaatgtat taccttccac aagactccac tattttaagc taaaatttac
      121 atcttttatt aactcacctc acctatacac ttagctctga tgcctctcgc cgcccatctg
      181 ccatccgcat acagtgagtc acttgatatt ccacccacca atttttccta acaaccactg
      241 tgcaattaaa ctcaacacgt tctgttgcga ggtaaattag gcacacctgc ggccagcctg
      301 catttgaacc gcatcagaaa aggacctaac aaggtgagag cagtaccaca aagttatagg
      361 cctgtcaagc aattaggttt tcacttctgg gacatccgca cagtgcaatt atgctacaca
      421 ttacaacctg gctaatcttc tgaacaaatg tcatgtctcg gagaagcgag gaaaagcagt
      481 tcatctgcaa atgtggctgc tcttaagcct ccaccttatg cacataacaa cctacaggag
      541 acaaatgaaa gatgtttttt aaaccctgca agtgcctttt catcctgttc acctcttc
//
LOCUS       KCOD01002951             561 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 328146pyr ultra-conserved element
            locus uce-7739, sequence.
ACCESSION   KCOD01002951
VERSION     KCOD01002951.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 561)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 561)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="328146pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>561
                     /note="ultra-conserved element locus uce-7739"
BASE COUNT          152 a          139 c          106 g          164 t
ORIGIN      
        1 tgccctccca tcctcagaag aaatccttct ttcctcccat cccttttttg gagaacccgg
       61 actggagcca gagaaacttt gcatcttcgc accatttgtt gatatcccct gccttacttt
      121 tgcagaggca ctcggggaac gtctgtttct atttgaaacc gtcaaaatta gcattcagta
      181 attaaaaatc acaccctttc tcttaataac ctaaccagca tgatacaatc aggttgtgcc
      241 aactctttaa tctaattgac taattacaga ttttaattta gtcagttact gaacaactgt
      301 tgacaatttg ttttcattag ggacagaaca ggataaatat ttaggctccc cagtcaaaga
      361 ctaagacata agctctgggc tctgacctcc ggtttcacaa tggagccttc tccatgggca
      421 tcacccatgg aaaggtgctg ctctgaaatg ccctgctcct gctgctgggg ctgctccatc
      481 cgacagccaa cgttgtttaa aatacaatat aatccatctt tgcatggtac tcaagcaaga
      541 gtggggttta ctgggaggga a
//
LOCUS       KCOD01002952             758 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 328257pyr ultra-conserved element
            locus uce-1643, sequence.
ACCESSION   KCOD01002952
VERSION     KCOD01002952.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 758)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 758)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..758
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="328257pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>758
                     /note="ultra-conserved element locus uce-1643"
BASE COUNT          184 a          171 c          205 g          198 t
ORIGIN      
        1 ggtgatgtca gaccgcttgg gtcatttgaa ggttagcagc ctgggaaggg ttcacggaaa
       61 gttcactcgc atatattagg caattcaatc tttcattccc tgtgacacaa gtagtaggaa
      121 gtgagctgtt cagaggcaga agcatctatt cacggccgag ggggatcccg agcctccacc
      181 ggagctgttt tatcccgggg aggtgggcga ttggcacggc gtgggacgcg gcacacaccc
      241 ggcaagcgcc ccaggagctg gactgactct caagaaattt tttgatggta gctaaaactt
      301 ggaatgctgc tcgcatcccc ccatcttgct ggattggctg ggcagcctgg aaaatggtaa
      361 atgatcattt ggatcaatta caggctttta gctgtgttgt ctgtcataat tcatgattct
      421 ggtctgggaa aaagaccaac agcctacgtg ccaaaaaagg ggcagagttt gatggagttg
      481 ggtgtacttt tatgtgccat tttcctccac acctagagga aagcactttt gcaggcattc
      541 tgtgcagggg gaatcatgtt tgactgtatg gacgttctag cagtgagccc tgctcagatg
      601 ctggatttct acactgcgag tccgtcttcc tgcatgctcc aggagaaggc tctcaaagca
      661 tgcttcagtg gattggcaca aacagagtgg caacaccggc acagtgctca atgtaggtcc
      721 caactgttat ttttccactt taaagcaatt actataat
//
LOCUS       KCOD01002953             522 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 328363pyr ultra-conserved element
            locus uce-7299, sequence.
ACCESSION   KCOD01002953
VERSION     KCOD01002953.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 522)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 522)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="328363pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>522
                     /note="ultra-conserved element locus uce-7299"
BASE COUNT          166 a           78 c           88 g          190 t
ORIGIN      
        1 aagttggctt gataaacccc cattggtatc ttcagggaac aagtagatta aacaagtaat
       61 tataccataa ggcttttaga agttagtaga tttaaataca ttgtatgaat ctcatcttaa
      121 tgtagccttt tgtctatagt gcttcctgcc aacctcctga caggaaataa acattaaaat
      181 aatctttaat cccttgtctg gtctattacc attaacaatt gatgcacttt aattttgtgg
      241 gattttaact acaaaatgga atggctaagt agtgataatt gggtttggaa ttatacggtc
      301 atttatatca acagaaatgc aagtggctgg gagggtgatt aattatttaa catttcctgg
      361 ctgtagttcc tattatagaa ttttctgata tattctgctg tgaacaatta tcaccaaatg
      421 aggataaaca aatctgtgat gtgaagtctt atttataaat taaactatat ttagaaaatg
      481 tctatttcat ttgcattttc cctttctgct tgacagtact gt
//
LOCUS       KCOD01002954             729 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 328475pyr ultra-conserved element
            locus uce-3703, sequence.
ACCESSION   KCOD01002954
VERSION     KCOD01002954.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 729)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 729)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..729
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="328475pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>729
                     /note="ultra-conserved element locus uce-3703"
BASE COUNT          192 a          126 c          144 g          267 t
ORIGIN      
        1 gtcttaataa ttgtactggt ctagtttcta cataaaaaga caagggtgaa cattttcagt
       61 ggctgatgga atcttaactt tttgtgaact agtacaacaa atactatcaa aaatgcccca
      121 agactgacgt tccattgatc aagatacaaa gcaaaacaaa ctgtccaatt cagaaatagc
      181 taccaactac actgtttggg cctaacaaaa gaggtgctat agcagtaatt ttcttttgtt
      241 tgcttgatca ctggaatttc gttaatttga ttgcatgtct ttcacttaat tgggtcatgt
      301 tttttctaaa acttaaattt ttcttcttcc tatagccctg ccataggaca ggctgaggca
      361 gagtctcagt gttgccctgt tcagtctgag gcaagtggga tttattttat tcattctggg
      421 ggctttcaca gctttatggc tgttggatat ttatgtcccc aaacttgcag caagtttggt
      481 gaaggcccct aaatttattt taatttagga ttctcttttg gtagatgggc tctatattta
      541 tttttattat atttttaaga gtcaagggga gggaatttaa gatgtgttac cttttctctt
      601 aatagaacac ctttccttcg aggctgctca ggtagtcctt aagccatgca ttgcatttgt
      661 gctgtatttg ttttcaggct tggtagtgtt gactttgtgt agtctctgaa ttagtgacat
      721 gtaaatacc
//
LOCUS       KCOD01002955             728 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 328587pyr ultra-conserved element
            locus uce-2163, sequence.
ACCESSION   KCOD01002955
VERSION     KCOD01002955.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 728)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 728)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..728
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="328587pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>728
                     /note="ultra-conserved element locus uce-2163"
BASE COUNT          205 a          135 c          157 g          231 t
ORIGIN      
        1 cgcaaacctt ctttatttcc aattgaaatt ttaaaccgat cttgctgtag catttacact
       61 gacaagaaac gggttttaat agtttaccca tgttgctgca aagaggcggg gaaggactgc
      121 aagtttaaaa cacgaaggag aaaagttaat ttaaagtgat gtttggtaaa aagtcccctt
      181 tgagatcctg ttgtgtaatt gaacacatta ggagaactga cagtaacttc acggtatgcc
      241 taagtggagg tctctacggg tcaactctcg gatcttgtgc cgacacgtta aacaagtttg
      301 tcaattttcc atcagattga tttttctcac aggtctggaa gcctcgtctc atttcatctt
      361 atttccacag gggttcttaa cattgcaaac tgccatttac ttttgtctca aagtgtgagg
      421 aatgattttt atctccgagt ggcaatcacg gcaggcagct ccagcactgc ttataatgtt
      481 gcacattgtc ctccctcacc aactggggtt tcttttgtgt ttttcccctc tttgggaatg
      541 atgtggattt ttagaataca ttcaaaataa ttattaacag aatgtactta gggcagatgt
      601 ctgtagtctc tgaagtgaac aaaaaaagca acagaaaccg tggggttttt tctttgcagt
      661 tttcagcata atgagaggtc agcttgagaa aatatgatgt ctctgggaag gtcacaggga
      721 agagtatt
//
LOCUS       KCOD01002956             528 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 328700pyr ultra-conserved element
            locus uce-7102, sequence.
ACCESSION   KCOD01002956
VERSION     KCOD01002956.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 528)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 528)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..528
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="328700pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>528
                     /note="ultra-conserved element locus uce-7102"
BASE COUNT          155 a           94 c          106 g          173 t
ORIGIN      
        1 aaagaaatgg gggcttaact gaggggtaag cgtggggtct ctggagcttt gcaaagcact
       61 gaaccatgca gctacagctg tcctccaaac aagcccaaca ttctttattt atttgttatg
      121 aaatatttat ggatgttatg aaaggtttaa aataattctc tctctcccct cttatttttg
      181 ccctggcaca gtgttttcta atgcataaat aattctggcc tgtggacagt gggacagcac
      241 attaggtggg atgtatccgc tgtatcacat tctttctgcc tgagagaaaa tatcattcct
      301 agtaattttc tacacttata caatctgcgt tgacagtaaa taattgatgt atgaatttag
      361 gactaaactc caacacaata tgactttatg tcaagggtta ctcccagcag attttgagct
      421 aaatcatctt gcaaaatgga ttctttcagt ggaaaaagga aaaagctttt tgaaattatt
      481 ttaatggaaa gatgggacct ctgcatagtg cttcttttga tgaggtct
//
LOCUS       KCOD01002957             485 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 328795pyr ultra-conserved element
            locus uce-6627, sequence.
ACCESSION   KCOD01002957
VERSION     KCOD01002957.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 485)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 485)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..485
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="328795pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>485
                     /note="ultra-conserved element locus uce-6627"
BASE COUNT          147 a           83 c           99 g          156 t
ORIGIN      
        1 tgtgtgtgtg tgtacatgca caggcttagt cctcaggtgg aactgtggtt cctgtgcttt
       61 cgttctcgaa gctgttattc tggaagggaa tggaggcagc tgtgtttaca gctcaagtct
      121 tggcatacat ttaccagaat ctattattca tatcgttcag tatcagggag agatctcagg
      181 ccacctgtct atctgacaaa ttcacccttt tgtgagcttt ctgttcatag caaattatgt
      241 tcacattgat gaattgagtt tttatgagca ttgctaacta acattctcac agaaggccag
      301 gggcaataga ctgcaagtgt ttctggtcca caagtaaatg ttaaaaagct gccagtattt
      361 aaagacaatt tgccatggag ggatagttaa aatatttggc aaagccttga tatttataaa
      421 tgcaagaatg tccataaatt attacagata gtatacttat cacaaataaa aaataataat
      481 aattc
//
LOCUS       KCOD01002958             780 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 328899pyr ultra-conserved element
            locus uce-6966, sequence.
ACCESSION   KCOD01002958
VERSION     KCOD01002958.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 780)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 780)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..780
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="328899pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>780
                     /note="ultra-conserved element locus uce-6966"
BASE COUNT          231 a          151 c          139 g          259 t
ORIGIN      
        1 tttttcatac taaaacatca acatgaagtg ttttgtcagg agtctttatc ctgctatgtc
       61 cttcatatcc cttggtatta ataaacatca ttaataagct aaagagaagt gactgatgta
      121 ttccacacta ttattaaatt gttggtaacc aaggcaggta tgttggttag gcttcttttc
      181 catgggggat gaagagggac ctgtcccttt ttaaccactt gctctgaatg acttttatac
      241 ccaatataag tgagaaaaga ggatgaatgt cacctctctt ctctttctcc tcctgtcgat
      301 gcatactcct tcttttgatt gacagctact aataaccttc ctgccctaag tgccatggag
      361 acactttatt aggacaaaca gccaaggaaa tctaggaatg aagccaagcc tgcagtgagt
      421 tattatcagg cttgtattta tctcagcttt gtaagtgata tgcaaatcct gaaatagatc
      481 ttcttctgtt gaaggacagg tccctctgtt aattgatcca ctgagattca gcttaacctc
      541 ttttagctat cagccaggga aacaggctac ataaaagagt ctcagtgctg tatacagttc
      601 acataaattc actgtgcatt ctacaaggaa aacttccaca cagaaaatgc atttttagtt
      661 cctgaacata ttttacatat cagtgttatc tgcataacag atcaaactga tttgtttatt
      721 tgtttattag atatgtatga gggtacatac tcataatcaa atgcgatttt agatggagct
//
LOCUS       KCOD01002959             772 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 329012pyr ultra-conserved element
            locus uce-953, sequence.
ACCESSION   KCOD01002959
VERSION     KCOD01002959.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 772)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 772)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..772
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="329012pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>772
                     /note="ultra-conserved element locus uce-953"
BASE COUNT          260 a          158 c          113 g          241 t
ORIGIN      
        1 agtaaactca gctttgacct aagaaacacc tcaaggcatt aaaatttcaa caggcaatgt
       61 cagtgttaca ttaaacaaga actcctccag ttcgctacag agctgggatt tgaataaaac
      121 gttcaatgtt aacaaacaat acacacgttt ggcactttgt gtattaaatg gatcaaagag
      181 atttgataag gcacaataca ccatttgtac agacctgatt gagttaatat aatatcagca
      241 aattttacaa cgaaatgaat ctgtttcttt tctttgtgtt taaaaccagc acagattaca
      301 aattttaatg atctgaaaat gtttggtata caaaatcatg cttatttcag tattagcaaa
      361 aacacaagaa atttttcaac acaaacaccc agctgtgtct attttaaaag cagttcaatg
      421 acagcttgca cttatgagca tgcaatcagc taatttcgct tttttttttt tctgtgttaa
      481 tcaacacttt ccttcctgca tatcagagta caaatagtat agttactcca catcagtaaa
      541 tgtttacgta acctgtcctt tctcaagaat ctggttacac cgaatcatta catgctagac
      601 cgagtaggca aatgcactgg gcccagccac cctaatgggt gaaccataat gacacatatt
      661 agttaatgat catcataatc ataataatat gcaggaagct tacctttcct cttacctctt
      721 gccatggtag attcatgtaa tatcctccac atcgcactct tcttcaagaa at
//
LOCUS       KCOD01002960             589 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 329121pyr ultra-conserved element
            locus uce-4788, sequence.
ACCESSION   KCOD01002960
VERSION     KCOD01002960.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 589)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 589)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..589
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="329121pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>589
                     /note="ultra-conserved element locus uce-4788"
BASE COUNT          183 a          100 c          115 g          191 t
ORIGIN      
        1 gtggctcagg gcagccacct tctccccaca cccccgatcg gtggcgggac atcaaggcag
       61 ggccgaccga cgaggttaat taggaggctg aaattataat gttatgttaa agaacaaaga
      121 gtctccaaag gaaaaatatg tgccgcatat ctgacaaaga taaattggat tattcaaaat
      181 attcctgatg aaatgttaca ttttgcaact aattatcaat ctgttttatc tccggaccag
      241 ctgggcattt ttgtgcatgc aagacctgcc ttaccaatga tcttaagatg tcagtgtagc
      301 gtttacatct tttatttcaa gatttaaata actaggaagt agctaatgta attcactgct
      361 gagaagaaag gctagttagt tgaatgcttt ccaaagtgat cttctcctaa tgaacttctc
      421 tggactgtga gtaatgagac tttattcaaa taatgtttaa gaaaggtttt tataatgtaa
      481 ttttttaaag aaagagcagc atttaatgca tttaaaatat ctttattaat cctatactgt
      541 ctcatgtagc attaaaggat tgtgaatgct tggttttgtt ccttctgaa
//
LOCUS       KCOD01002961             684 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 329231pyr ultra-conserved element
            locus uce-1034, sequence.
ACCESSION   KCOD01002961
VERSION     KCOD01002961.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 684)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 684)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..684
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="329231pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>684
                     /note="ultra-conserved element locus uce-1034"
BASE COUNT          195 a          147 c          108 g          234 t
ORIGIN      
        1 aaggcaataa taatatttca tatatgaatt ccagcttagg agctcaacaa agtgaagtca
       61 cggttattgt ttttttgctc cttcacagag cttttcaaag gcactcgcgt ttgcataagt
      121 tgtaagttta tgttaaagtc ctgtgctagt ctgtgttaca cgttttagtg tgttctgtac
      181 tgccctggga gctaaccccc ctcccccaaa gaactctttc tcagcccctt catctgtaac
      241 ctttctgcaa gtaaatgcta attgaaaaag aaagaacacc actaatcttg gaatttaaat
      301 gcatttaaca aaaccaatct cgatctaaat tgttgtttca ccattccctt ttccccaaca
      361 gatgtcgaga aactgcaatt cctattaaga acacttgact gtttactcag caagagaact
      421 tcaggctcag gctgcatcaa tctaaatgcg tttcaggacg tcagtctttt gaaaagtgca
      481 gactgttagt tggttatttt taaatgtaat cttcacataa aagagttgct gcatttttct
      541 tttcactttg tcatccatct ctccctcctc ccaatgataa catcaaacat agttgtcctg
      601 aatttttgag tcccattcca tttagtttta tttcatattt gtttttgacc aatgaaacag
      661 tgaagactgt gaacattatt acag
//
LOCUS       KCOD01002962             775 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 329344pyr ultra-conserved element
            locus uce-8044, sequence.
ACCESSION   KCOD01002962
VERSION     KCOD01002962.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 775)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 775)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..775
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="329344pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>775
                     /note="ultra-conserved element locus uce-8044"
BASE COUNT          251 a          134 c          172 g          218 t
ORIGIN      
        1 gcacaaaggc agctccccaa cgaattggtg acaagagtaa aaaggcaatc tagcctgtgt
       61 aagctttaaa tgtggtctga attttacaat tacatgtcct aaagcccatt attagacatg
      121 agggcgatga gaaggaaagc agtcattgca tcactactaa caccaattat aggaaacata
      181 aatcattcaa atttttgtac tttaataaaa atcagcctga attggtgaaa aggaaggatc
      241 tactatagga gcctaatggg atagaagaaa atagagtaat tggaggctgc tgtcttttca
      301 ctttctatat aaaattattt gaagagacag ccaagaactt taaacagcag aaacccagaa
      361 aagttgtaat ttggatgtct tcagttgtga ctttaatggt gtttgcttaa agagctttct
      421 tttatctctg cagacatact tcaatgacaa tatcctcaca ctgatacgga cattggtaac
      481 aggaggagcc acaccagagc tggaagcact gattgctgag gaaaatgcat tgagaggagg
      541 ttacagcacg ccccagacac ttgcaaacag ggacaggtgt cgagttgctc agttggcttt
      601 gtatgatggg ccatttgcag acctaggggt aagatcatga gggaaatgta ggaccaaggc
      661 tggtctgtgc tattttctct cagactatct tagtaggcat ataatttcta ttatttaatt
      721 taatagagct tttggattgc ttaaaaattt acagcacaga gtgccaggtt tgctc
//
LOCUS       KCOD01002963             248 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 329449pyr ultra-conserved element
            locus uce-3714, sequence.
ACCESSION   KCOD01002963
VERSION     KCOD01002963.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 248)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 248)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..248
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="329449pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>248
                     /note="ultra-conserved element locus uce-3714"
BASE COUNT           48 a           67 c           49 g           84 t
ORIGIN      
        1 ttttttctct ccaagtgagg actaatccca tccctgggcc tgctctctgt tcccttcctg
       61 cattagagat tggctataag gagaaggctg acggctgcag catgaagcgc attattacct
      121 tgtgattcca tgaccctcct ctatgcatcc ctaactctcg aaagctgatt cagctttcag
      181 ctagtgctct ggtgagtcct ctgctgcaac agaagctcct aactggtatg tctccttttt
      241 tttttttt
//
LOCUS       KCOD01002964             419 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 329550pyr ultra-conserved element
            locus uce-2926, sequence.
ACCESSION   KCOD01002964
VERSION     KCOD01002964.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 419)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 419)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="329550pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>419
                     /note="ultra-conserved element locus uce-2926"
BASE COUNT          123 a           74 c           68 g          154 t
ORIGIN      
        1 ctcattgtct ctgtcccttt cccactttga gattgctgta aatgcctgat caaattatat
       61 ctgctgctct ttagaaccac gggataactg atgaggcttc tcacatcagt gtttctttat
      121 cctttttaga agtattagag tttgacattg gatgacttta taaaacattc aactaattgg
      181 atttgttaaa ataaataaat caaacactaa ttggaatgtg ccctgccatt atttttgctt
      241 actgaattag atattacggc gtgaagttct ttttatcata tttgtgcact tatttaaaca
      301 ctctgcaaat tcaattatat attcaaagga gccattcaat ttatgcaagg ctggtttaca
      361 tttaatccag gggcaagtct cagtaactga tgataggtct gctcaagatt aattagcat
//
LOCUS       KCOD01002965             574 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 329659pyr ultra-conserved element
            locus uce-7788, sequence.
ACCESSION   KCOD01002965
VERSION     KCOD01002965.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 574)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 574)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..574
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="329659pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>574
                     /note="ultra-conserved element locus uce-7788"
BASE COUNT          197 a           99 c          120 g          158 t
ORIGIN      
        1 actttatcca ggctctatga tgtacaatgt cactgtagca gagcacttcc tctttgttcc
       61 gagggaactt gattcataat gagcccatct agaatgtact ctgattgtga taaagagctt
      121 tacacagagg ctcctatttt agagaaacag gtgttggctt tgattagaga aaattacatc
      181 attcaaagga aaggaaaagc aaagggaaag gaaagcaaaa atagaaaaag tagcaaccag
      241 acacaaatac atttgcacat ataaagccgt tctaatgaaa gccaaattga tttgacattc
      301 agtggcagtt tgaagccaaa aaaagcaaag cagcctacaa aaggcccagc tcattgttta
      361 tggagtgtca tacttcatca tctgtgagac caataacggt gatgggaaga cctttaaagc
      421 agggagtttg cacagaatgg ctgtgtggat accactgata tcagatgcag tagaatgctt
      481 gtgaactatt tcctgaattg aaatcatgtt tgtcagatgc tctctacaga tcatatcttt
      541 gagaacagta cttagtatat tgttaaaatt cttg
//
LOCUS       KCOD01002966             588 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 329769pyr ultra-conserved element
            locus uce-1622, sequence.
ACCESSION   KCOD01002966
VERSION     KCOD01002966.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 588)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 588)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..588
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="329769pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>588
                     /note="ultra-conserved element locus uce-1622"
BASE COUNT          174 a          145 c          141 g          128 t
ORIGIN      
        1 tgttcctgaa aagggaggag ggccaagaca aatgccacgt ccatcccttt tctaaactac
       61 tgagcaaaag taacaaagtc aaagcagaat caaatttcaa agggacaaag aataaaacat
      121 ctgttacacg aaggggggaa gcagtttaaa gacagagcta agtgaatctt ttagcaacct
      181 cccttcaggg aagggaaatc tgaccccagg aaataaataa aagtcaccca aaaagtgaac
      241 aaaagaggtg tttgccccaa caccattcat cgctgctaac gacttgttca ttatgagtga
      301 tgatggataa agacttctca cgctgagatg aaatcaagat ttatatgcat tgtttcctct
      361 cccaacttgt gggaagatca tcatcattta attctatctc tgcggccagt gatgggcatc
      421 cagagagctg gttatcacac ggcgcagtca gctggcaagg gctgggacgt gccgttggca
      481 catctggacg gaggcgccgc agccgagggt gagcgatggc tcctggccac cctccaaatt
      541 gctgcagact ggcggggctc ctctccaccc ccagcactgc tcctctcc
//
LOCUS       KCOD01002967             501 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 329880pyr ultra-conserved element
            locus uce-3808, sequence.
ACCESSION   KCOD01002967
VERSION     KCOD01002967.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 501)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 501)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..501
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="329880pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>501
                     /note="ultra-conserved element locus uce-3808"
BASE COUNT          141 a           95 c          116 g          149 t
ORIGIN      
        1 agaaaagaaa cacacaagaa ggagaaaaga tggggaatag ctgggattat ctctgtgctg
       61 tctctcaggt ccagtgacaa cacgactaca atgggtagct ttcaggactg catatggtct
      121 tccttccgag ggagttgatt aagcgactcc ggatgaaatt gaaatcctgt gatttgacct
      181 ttgtctggcc tgggaggact gcaattcgca taacaatttc cttttgttct ttgtttggag
      241 ttattaatcc aacatgagcc tcgaattaat caggggtagt gcgttgttac atttctaatt
      301 cacagctcca ctgcttgtgt cttttttaat taaggccgaa tgatagcagg ccttagcccc
      361 tgattgcaac acttactaac cacacattga gggatgaaga ggctaaatag gcagaatgag
      421 attacttcaa ggtttcactt aattgttttc ttcctttaag taaagagcac tgaatgaaca
      481 ttgttaatgc caggctggga g
//
LOCUS       KCOD01002968             557 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 329982pyr ultra-conserved element
            locus uce-7094, sequence.
ACCESSION   KCOD01002968
VERSION     KCOD01002968.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 557)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 557)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..557
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="329982pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>557
                     /note="ultra-conserved element locus uce-7094"
BASE COUNT          143 a          125 c          126 g          163 t
ORIGIN      
        1 caggctcagc ttttccagga ggaagcgctg ggcaggtctg cctttgggca tgcctgctgc
       61 caggcctcag ggaagctctg ggtgggaacg ctggcaggta tcttgcggta ccgagtggac
      121 ttccagggca tggaatacca aggaggagac gatgaatttt ttgaccttga tgactactag
      181 gtagtcgagc tgggtccggc aacacgtgcc tcgcccctcc agcatccaac ccaaggagca
      241 aactcatggt ggaaaacaca acagatccct gccttagaat tggaacattt ccagaacttg
      301 atccacgagc atttggattt gcaaaaccct acactttgat ttgtcatagt gtcagtacta
      361 agttcctata tgccactttg gactaattaa tcccagtttt tacttttact caatggtgaa
      421 attggttgct cttgtatttt atggaaatga tttttttaac cttcatgata cattaactgc
      481 tgtaaacctc ttccttccaa aattaataga agtaagatcc tatctcttta tactttgatt
      541 ggggaaatca attgctg
//
LOCUS       KCOD01002969             734 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 330094pyr ultra-conserved element
            locus uce-7133, sequence.
ACCESSION   KCOD01002969
VERSION     KCOD01002969.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 734)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 734)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..734
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="330094pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>734
                     /note="ultra-conserved element locus uce-7133"
BASE COUNT          234 a          124 c          153 g          223 t
ORIGIN      
        1 gagctaactt aatcctttgg aaggggataa tagggtaata aagcacgaag gaataatctt
       61 agtcatgtct ctctggtatt ctgacaattg caccctgttc taaagcagtc tcatgtaaaa
      121 aatgactgta gtcgtcagct gcacagatga gagaagcgtc cgcggctgtg tcagtcattt
      181 taatgagtca caggaggagg gaaagtgcag gaacaaatta aaaacaacag ccccccaaca
      241 aaagaaagtg agaatagtta caatttcatt tgcttttaaa gcacagcact tgggtaataa
      301 acgtcccctg caaatgtgct gagcaaacac ctccgcattc atcaatatgc gggagctgtt
      361 tattgcctca taaacttgga agcaagtgat attgtctcct aaatcaatgg ttgtgtggac
      421 atcctaggca ctgtaggaga acagtacatc cagacaatgc tgatacttaa attaatggtt
      481 ctagtaatga ctggaatgcg ctttgtcact aaaaaaagtt agatacagat taaaagtatg
      541 cctaggacac agtgtatata tgttgtgaca gggatgtgtg tatgtatgtg tctcattata
      601 gtttttatta ctttggcata aaaactacta ctccatgcag ttttgattta aatgtgggtt
      661 gagctgccaa tattttaagc ttagtttatg tatttcttaa tctgtttagt tttatcaatt
      721 tcttaaagaa ctaa
//
LOCUS       KCOD01002970             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 330205pyr ultra-conserved element
            locus uce-317, sequence.
ACCESSION   KCOD01002970
VERSION     KCOD01002970.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="330205pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-317"
BASE COUNT          144 a          129 c          148 g          213 t
ORIGIN      
        1 gtagaaagca ctttagccta aaccagatgt gcgaaagaga gctcctaaac gttttttatt
       61 tgtgtgtatg tgtttgtgta tgtgggagat atttttggtt cctgctaggc ttctttgcag
      121 caaagcccct ttctagaatt tactttcctt tattagagtt gcagctcggc tttgtgtggg
      181 cctctggggg ttttggccag ccgttggcaa tttctctcag acacccaatt acccctgacg
      241 tcaatgccgt ctctcccatc tcccttgggt gcccacattt tttcctttgt aacactaata
      301 gctgactagc taagtgcctg ttatttcctt ggcagaagat ttgattgtgt tttgggccgg
      361 atactaaatc caaaaactat gtaaaaatgt caataggtga gtgcacattg atttcggtta
      421 gtcacagtga tatttgagcc cctttggggg ctctgtctgg ggaagtattt tacaagaaag
      481 ataatataac agaaaattac tggagctgca caggtctctg gtggatttct taggggcctg
      541 ctaagtttct gtagaatcaa caaatgcttt attaatctaa atttgcggtt ttgttccgcc
      601 tctcttcaga cggttcgggc tccggaggag gctc
//
LOCUS       KCOD01002971             372 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 330315pyr ultra-conserved element
            locus uce-3842, sequence.
ACCESSION   KCOD01002971
VERSION     KCOD01002971.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 372)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 372)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..372
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="330315pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>372
                     /note="ultra-conserved element locus uce-3842"
BASE COUNT          142 a           72 c           46 g          112 t
ORIGIN      
        1 ttctccctcc caataataaa aattattgag tactctaact acagttcaac aattgaatca
       61 atgtcacttg tttgcaacct gttttgtaaa tactttatcc ataacgaaag atataaacat
      121 gcaaaaacct gaatccatag tccaaataat acatacacgt gttctgaagt ttctgcactt
      181 ctccacagac tatgccaata aaacattatg tacacatacc attttttaca gtgaagtggg
      241 aaaaaaatac tagaaattaa aaagtgtaca tggattaaga ccaaaaacat tctagcataa
      301 gatcaattct gctacaaact ggtgatatga aaactccctt tatttgcaac cagctgcata
      361 agttttagaa tt
//
LOCUS       KCOD01002972             659 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 330422pyr ultra-conserved element
            locus uce-7848, sequence.
ACCESSION   KCOD01002972
VERSION     KCOD01002972.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 659)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 659)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..659
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="330422pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>659
                     /note="ultra-conserved element locus uce-7848"
BASE COUNT          218 a          108 c          127 g          206 t
ORIGIN      
        1 agcactttca tgcctactgc actcaagtga taattaatat agtctaattc cagacatgat
       61 gcttgaattc atgtactgtc atcaataccc cgtgttaaaa tcaaaccttg acagggactt
      121 aacaccctgg aacaggtcat cgtatgataa tactcccttt cagtatttgt cttcaaccaa
      181 gcaaagtatt acaagatgag aaaaaaaagg aaagaattac aaatgaagag tgacgcaggc
      241 tgtgaataga acatatgtta ggctaggcag aggcatcagt gaattatatc atttcatgat
      301 gaagtggcag tggggctgaa cggacctatt ttaaaccttg atgtgtttta tctctactgt
      361 atttggtctg tcatctttag agaaagactt tgtgtaattg agagtcagct ccaatctgca
      421 tgacttgagc atgaagtgta agccagatga acagtgttat ggaagaaagg gaatcatcta
      481 ataaggtata aatgagaaat aacctttata cctcagacat ttaagtgtgt tataccgtgt
      541 ttaatggtat tattttcacg gtactgttca aacaaggttt gaaagttaaa attgatgttt
      601 ttacttcatt attttaataa aacctgcata tttacagatc ctttgtcaca ctgagcata
//
LOCUS       KCOD01002973             716 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 330533pyr ultra-conserved element
            locus uce-7073, sequence.
ACCESSION   KCOD01002973
VERSION     KCOD01002973.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 716)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="330533pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>716
                     /note="ultra-conserved element locus uce-7073"
BASE COUNT          249 a          124 c          182 g          161 t
ORIGIN      
        1 agaggggagt cttacaggtt tgctgagaaa atgcttcttt cagaaaagct agatgtgtct
       61 cattctgata ctgaggagtc agttactgac catgctctac cccttagtgc agagttacag
      121 gggactgata aacgatgcag agaaaaagta gctactgccc ccaaaaaaga gattctctcc
      181 aaaatctata aagatgtatc tgaaaatggt gtaggtaaaa tgtctaagga ggatcattat
      241 gataaagtga cagtgttaca ctacactgga gatgttagta gtcccaaaca tgcgatgtgg
      301 atgcgcttta ctgaggacag attagacaga ggtagagaaa agttgatata tgaagacagg
      361 gtggacagga ctgttaaaga ggcagaagaa aaactgactg aagtatccca gttttttcgg
      421 gataaaacag agaagttgaa tgatgagcta cagtctccag agaaaaagca gcataaaaaa
      481 aatggcaagg aaatacattc tagccagagc tctgccagca gcagccctga gaaagttctg
      541 ctctctgaat tgccttcatc cggggatgaa tggagtaagg tgaagcagta tgcacatgat
      601 gggaagtgct ttcccaaggt ggatgaaaga aaagcatcca gcttgcccag cagtcctgaa
      661 aaaaggatat atgtgcaacc tgcagaggac tctaaacgaa ctatggaaca caaagg
//
LOCUS       KCOD01002974             653 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 330644pyr ultra-conserved element
            locus uce-6942, sequence.
ACCESSION   KCOD01002974
VERSION     KCOD01002974.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 653)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 653)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="330644pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>653
                     /note="ultra-conserved element locus uce-6942"
BASE COUNT          227 a          105 c          123 g          198 t
ORIGIN      
        1 aaaggctctc taatatgatg gaataccagt aaaacagtga tgaaaaccat aggtatgaat
       61 atctgcaagt ggctcacatg aaagcattta ctgcttttca tgcacatgta ttaaaccata
      121 gtggaaagga gaccttcact gaaaatgcat taattatttg actctggttt tcctcagagc
      181 tatgggatgc aagtgaaaga ttacagctga aaaaatgatc atcatacttg aggtaggctc
      241 atggaatctt ttcttatgtt ctgtgtgaag ttgtcttgaa ccgaaacctc tgctccttaa
      301 ggattaaggg attgaaaagc aaagactgaa gctgctgtaa tttaaaccca gccattctct
      361 agcacaaagg tgcaaaatgg actgagtcaa tctgcttctt tgctagttca cctaagaaat
      421 aattttacct tttgaaagtt ttgtattatt aacattccaa agatgtcaca ggaaatttat
      481 tctcttgatt tttaaacatg agatcagagc catgagacat ggaataggag aacatggttt
      541 caaattgcaa aaaattccat ctatgtgatg catagataaa tcataaagat aaaattaatc
      601 aatgaatgcc actaaggtgg gttttaaaaa tatcttgaaa ttcttgcaga gca
//
LOCUS       KCOD01002975             587 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 330753pyr ultra-conserved element
            locus uce-1272, sequence.
ACCESSION   KCOD01002975
VERSION     KCOD01002975.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 587)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 587)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..587
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="330753pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>587
                     /note="ultra-conserved element locus uce-1272"
BASE COUNT          197 a           95 c          136 g          159 t
ORIGIN      
        1 ttaagtcatt attagaaatg acagggaaac ctgatgaaat tgtactttca attggaaaac
       61 aaaattgcaa tcagaccaac atgatttcct catggtctga ccatgctaat gccaagtcga
      121 gacatgggca aatgtattta aaagccataa tggagtatta ccatgcaatc tctttttact
      181 ggcccttatt aatataaaac ttcaatttgc atgtaaatgc ggtcaacttt catatcatca
      241 aaatacatga ggcctgggaa agtaatgaat tgaagtttga tgcggcaatt acggacgttt
      301 ataaagaatt ttaaaggggt cattctggcc ttggctgaga aaatgaggaa atcaacaggg
      361 aatattgtca atatagcaac agtgggagtt ggagtcagtc ccaggtgtta gaaggccaga
      421 tgatgattaa tagagaggga gtatgaagcc tttcacccag aaggactggg ctggacctga
      481 ggctcaataa cagaaatctc atgaaaaggt tcttgctggg ttcccacttt agctgcctcg
      541 aaatatgttc cagagggaat aaagtagcaa gtgtttatga gagagag
//
LOCUS       KCOD01002976             724 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 330961pyr ultra-conserved element
            locus uce-1914, sequence.
ACCESSION   KCOD01002976
VERSION     KCOD01002976.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 724)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 724)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..724
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="330961pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>724
                     /note="ultra-conserved element locus uce-1914"
BASE COUNT          213 a          154 c          114 g          243 t
ORIGIN      
        1 tttttggaac taattaatta tgtcatgaaa gggagattcc ccaatccttg ctaatcttgc
       61 tttctggata acagggggaa aatgaggaag gtgtttagca gtctcagttg tctctgtcat
      121 tcaaatcaca gaatgaagcc agacagcgca gatcaggcaa agactgcctt ctccgcttat
      181 gttttctctg caagaatcag tttcaaatat taggtggatt gttgcaatta actaagaaaa
      241 atgtttcaaa gctgtataat taaaggccag cattttattc ggttttaaaa tagcctttat
      301 gaaatctact cctgccactg gtaattacaa tgtacatctt aatacacctc tgctaggcct
      361 gagctggaga taacagtcct gtgtgtattg catttggctt gtgcatagaa ggtaaaatcc
      421 tttatcttat ctcaatctcc aaacaaccag cctctcttcc aattcagccc taatcttctt
      481 agtaaataat actgatattt ttcaccataa caaaaatgga gctgccagat tcagactgat
      541 aacacctctc atttacacac cattctctgt caaaatctgc ctgatttttc ttaatctctt
      601 taactcatct tttttacatt cagccatggt aagttccttg ctaccaaata atattattat
      661 aaataaatcc attgaataca gctgcccctt tgggttatta ttggaaatcc cctctttcct
      721 ggct
//
LOCUS       KCOD01002977             808 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 331071pyr ultra-conserved element
            locus uce-4605, sequence.
ACCESSION   KCOD01002977
VERSION     KCOD01002977.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 808)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 808)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..808
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="331071pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>808
                     /note="ultra-conserved element locus uce-4605"
BASE COUNT          242 a          148 c          206 g          212 t
ORIGIN      
        1 cacagcactg ttattcagaa gtagctttcg agcagagagt ttcaacggga aggtgctgtt
       61 tggttggaca caaatcagca aatgtgaagc gtgaataatt caagcgtgca tgaagagctt
      121 tctgaagacc gcaagaattc ttcaaacatt tgcatcagcc ttagaggaca atacaagcag
      181 caggatttga aacagattta cagatgcact ctcttgagaa cgctcattaa atgcaagatg
      241 cttctgtggc tcgtgggctt gcacggaggt agaggtttgc aagactgacg tatcagataa
      301 agtcagagtg gttaccacac cgacggtgta gcagctgcat aataaatgat ggagagaatc
      361 atgttaggca tgcccaccta acctaacttg aatcatgcga aaggggagct gctggaattc
      421 aaatagactt tctggttccc agcagtcggc agtaatagaa tgctttcagg aagatgacag
      481 atgcagggga aagatgctgt tttgcactat cttgatttgt tacggcagcc aacttattgg
      541 catgatggag tgacaagaaa agcagctggc atggaaggta ggattatcaa agctattgca
      601 tcattatgaa tgtaattaga aactgaccat gacaaagcat atgctagaat gagctgtcgc
      661 agaggatttg ttgctgaggt cttgaaactc tgaaaacaaa attcctcgtg caaaatggat
      721 tttgcagttt catgtatgct tttctttcct gctcgcctcc aagctcgggg aatcgcttgc
      781 ttgaaagaga gtgctctgtt aggatgag
//
LOCUS       KCOD01002978             706 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 331181pyr ultra-conserved element
            locus uce-533, sequence.
ACCESSION   KCOD01002978
VERSION     KCOD01002978.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 706)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 706)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..706
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="331181pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>706
                     /note="ultra-conserved element locus uce-533"
BASE COUNT          215 a          149 c          145 g          197 t
ORIGIN      
        1 ttgtgtggca ccatgcagaa atctgccaaa acaacacagt ttggtgctca ttgtatccta
       61 attaatacta taatgagttt ccttagatag ccaaatcctt aatcagccct atcaaaacta
      121 tgtctgttca gagaaagact cgtgttaatt ctgcttaatt cctgacagtg gttaagcacc
      181 attaatactc cataatttca ttgtatgtta ttgtaatcat atcagcatat atctcggcag
      241 ctacagaagg ctcaataggc tgttcatgaa ttatcagtca cgtggttctg tttctctaag
      301 agactatctt ccatcacagc cagacctcct ctgccctccc cacagtcagt agcctaagca
      361 ggtattaata aaggtctcct ttttaaaatt gcactgctct aaatggtctt taagggaccc
      421 agcagtaatc tcaagatccc tatattttag caggaaggca ggacagagga attaataaga
      481 gccctttctg tgtaaactgc tccctgctct aaggctatat cctgatgtca gggcgctaag
      541 agaattttaa atgcacagga tggattgttt gtgttgcgaa agcgaaacag ggggcaaagg
      601 ctaagagact tgagaaaatt gaaagactgc cagggatgct gggatgcaaa tagcaacaaa
      661 acagggataa atgctcctgc tcacatatgc aggagtcctg cagaag
//
LOCUS       KCOD01002979             498 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 331292pyr ultra-conserved element
            locus uce-814, sequence.
ACCESSION   KCOD01002979
VERSION     KCOD01002979.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 498)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 498)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..498
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="331292pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>498
                     /note="ultra-conserved element locus uce-814"
BASE COUNT          138 a          121 c          113 g          126 t
ORIGIN      
        1 gggggagcgg ggggcggcag ccccgcgtgc tgagcccttc cccctgcctg cccgccgctg
       61 ctgtcagctc gctgcctgca ctttagctgt ctctttccca gtccctaccc tgtcagtttc
      121 tgggctgcca atttcaactt gaagcttgac tgggctgatt tgatgcaaat acctccaggg
      181 aaaaccctga aactgatgaa cagttatgtc aagtcgattt tgcaccatcg ggaaaaggta
      241 acctctgcga gaaaaaaaaa caacaaggtt aaagagacaa gggcttttca cgtgtaatac
      301 cactgctgca catctcgttc actgtttacc atccctcaga aattgtaact gtcagaatta
      361 gtcctaattg cagatgcgaa agctgccatt ataataaaaa cagaggcagt gcaggcatta
      421 aatgtagcag cctaatttgt gagactactg aaaaggtaga gtaaatgaat atttcattac
      481 tttaattacc agggacta
//
LOCUS       KCOD01002980             741 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 331405pyr ultra-conserved element
            locus uce-2733, sequence.
ACCESSION   KCOD01002980
VERSION     KCOD01002980.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 741)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 741)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..741
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="331405pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>741
                     /note="ultra-conserved element locus uce-2733"
BASE COUNT          232 a          147 c          125 g          237 t
ORIGIN      
        1 atcaattaat ttgaaggaag gaaatgtgtg acagttattc tgcaaaacaa ctgtaattac
       61 aagcacctta gttaaactag ctctgaaaca gctaggactg cattttggag ctgcttgaat
      121 aacatttgcc ccacttatcc tccatttcaa tttaatattc gtagtgctag tgttgcctat
      181 atcatcaatg tcaaaaacta aaaagtctta tcttcaactt tcattccagt gcttcaaaag
      241 agctttgaat ttgcatctta ctctagggaa gatgtagttt aaaaacattt ttgcccagct
      301 tgctccatta atttctgagg aaaatgcacc tactgctgtg aatatgacag ttctcaacct
      361 tggtgttttt acaggatgtc cctccctagg gaacaaccaa caccattctg acttaccctg
      421 ctggaactgc acctcctgct gggtaatcag ctactgcagc actaagggag agacctcagt
      481 atgattaact ggatgcccct tgtgaatgct aaggaaaaag agaactgcaa gttttctagg
      541 gggaaaaagt gcttttagta atcatctgtt ttcaattcaa gcagctaatt tacagttaca
      601 gagagttgct caattaccag cagctcttag tattttatac atctcagaaa ggtttaactt
      661 aaaataatat tcatcaatct atgaaatata ttttcctccc aattatttct gtgagtcaag
      721 aacaaaatta attttctaat g
//
LOCUS       KCOD01002981             655 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 331512pyr ultra-conserved element
            locus uce-5842, sequence.
ACCESSION   KCOD01002981
VERSION     KCOD01002981.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 655)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 655)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..655
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="331512pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>655
                     /note="ultra-conserved element locus uce-5842"
BASE COUNT          200 a          123 c          157 g          175 t
ORIGIN      
        1 ggtcagtatc agagacaatt tccaactggg caaagtacaa tattttccct ctgcttttta
       61 tgaatggttg gatagggttg tgctggagtc agagtcccct gtggaagcca ttcatcaaaa
      121 caaaacaaac acacacaaaa aaaactttct aggtccagtc cagagccact gggtgccaga
      181 ggctgggaaa acatgcccca gctatcactg aaagtattca aggggctttt tggtggtctg
      241 aaaagtatga actgctatgt agaagggcag ctggtagaat tactgtgaca catactaggc
      301 agaaagccgc cttgtttcag acattgtctt tcctctcatt gaagtgtcag gacctaattc
      361 acgggaaatt tggtgagttg gcagctcttt cagaagattt cattgagagt gagtgagagt
      421 cacatgaaca tgagtgcgca gccaaaaata tatgaggatt tctgagctgg agaaaacagt
      481 cagccttttc tgtggatttc atgtggtttg ggagtaaaca cgtgtaatca acaggctaca
      541 gaagagctca atgagttctg taattatgag agattccttt gaaagaaatc attcctttgc
      601 agaaaatgtc cattaatgag ttcactgcag tccacctgga gaaggcatca ataaa
//
LOCUS       KCOD01002982             778 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 331620pyr ultra-conserved element
            locus uce-238, sequence.
ACCESSION   KCOD01002982
VERSION     KCOD01002982.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 778)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 778)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..778
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="331620pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>778
                     /note="ultra-conserved element locus uce-238"
BASE COUNT          187 a          156 c          156 g          279 t
ORIGIN      
        1 tctgtttcag agctcccttt gtgtgcagag tgagacccgg gtttctcagc ccctggaatg
       61 ctctttttct atcgctgcta atagctgtgg acgttttccg tgtggatgtt cagtacatgc
      121 tgttgtgaat cccaggatga tatcgccatt acttagagct gtattttcca ttgcctattc
      181 tgttattgct cagcatgcac aagggtagag ttaaaatctt tattcatttc atttaaaaat
      241 gtttcttttg ttctccttat cgtgttctgg ctttcccaag gatatatgcc ttgaacgaaa
      301 agtcacatgt gcattactaa ttgtgtgcca ttgtatttac agttcctagt ggtggcactg
      361 tgaagctact aattcttttg cttcacttga tgtaaaataa tctgagtgtc tttgatagca
      421 gtgaaacagt attaattgtt ttgtacattt cttggtcact cttcttaggt ggtcttcata
      481 atctattaga actttcagcc agatttttgt aatgtcatgc ctccagcagt gattaaattg
      541 gtaattaatg aacagtcctt ggcaacataa accacatccc gttaattttc ccttttgagt
      601 ttttcgaagt tgtcgtctct gtcagaaagc attgcgccac cttgctacgg ccccttggca
      661 tggaaccaca gcttttttgc agccattagt agatcagagc agtaatttca cagtattttg
      721 gtcagggtaa ttatagtacc aagtaccgag tagagttggg aattcacaca agaagtcc
//
LOCUS       KCOD01002983             657 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 331735pyr ultra-conserved element
            locus uce-3602, sequence.
ACCESSION   KCOD01002983
VERSION     KCOD01002983.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 657)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 657)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..657
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="331735pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>657
                     /note="ultra-conserved element locus uce-3602"
BASE COUNT          206 a          120 c          131 g          200 t
ORIGIN      
        1 cgtttttcat ttggctttct actatatctt aaatgcttta tttttcagag gagagataag
       61 acttggttct tcacataaaa ctacagctta gccattactt agtctttctc tgttacggaa
      121 aaggtcctgt ctgtgcacag atgtctcaga ttaaattgta tctcacagtc cttacagtgc
      181 tcagtactag atgaactgcc aaaagggccg taggcaagaa ctaaattgct ttggtttcag
      241 tacacagtga atttggctca gacaagctga atcagtacat taaatgcgaa tccctcacag
      301 atttgaaagc agcctttagc acaattattg actgtgagtg atgattatgt ctaattgaag
      361 gagacttttg ctacctgtag ctcagttgga gtccatgaga gccacagcaa ggcactgcat
      421 cttaattcaa tgttccagct tgaaagaagc aattgaacct aaatcctgaa gtgtatacac
      481 atggtcgata aactttaata aactttacag gttcagtaac tagactgagt gtacataatt
      541 caattcagga agggaaaata gctaacaagt atgttaggct acagtaatgt attagttcat
      601 ctcatgcaga ggccaaaagg aaaagatata gtttcatgct tgtcgttgga acaagtc
//
LOCUS       KCOD01002984             774 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 331845pyr ultra-conserved element
            locus uce-1678, sequence.
ACCESSION   KCOD01002984
VERSION     KCOD01002984.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 774)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 774)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..774
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="331845pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>774
                     /note="ultra-conserved element locus uce-1678"
BASE COUNT          261 a          151 c          127 g          235 t
ORIGIN      
        1 caggaatgac tctcaatcag gcatttttaa attgttttta aaaaaactaa gctaaagagt
       61 ttaattaaca ggctcagagt aatagttata ccatttttcc tcagctatca gctttcactt
      121 ttatttacga tgggagtccc ccttgtatct cctttcccac agggcccact atcactaata
      181 tttctgtgat ctgtgaataa accaaaattt aaagttagta cttacaatca atgcaaatta
      241 atgatttctt aaaaaaaata tttcaatcag gaaaagcagc tttgtagttg aaaatcccat
      301 gctggcctta gagtgggagt ttttccagcc tctgcttaaa tccaaaaaaa tactgcaatc
      361 ttctggcaca ggctcactgt aatgctttaa aaacaattta gcaactgtca ttgctgtaat
      421 tacagtaact aattaccatc cttagcaaac aaatagctta acataatacg caagccgaat
      481 caattttgaa gaaatgcaaa ttccgaaagc gaaaaagggc attttggcaa acctgaaaga
      541 gaagcgggaa aataatacac tttgttttat ctgcacataa ttcccaggga atatcatatc
      601 ataaatattt gcattcagtt cttatcagga catttgcatt tgcttcttat cagtctgcag
      661 gctggactct gccagataga aagtagagct ccacaccatg cacatatttc taatgaatca
      721 cgtctcaggc cgagagaata ttttggctgg aactttatca ctgagatgaa gagg
//
LOCUS       KCOD01002985             462 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 331953pyr ultra-conserved element
            locus uce-4472, sequence.
ACCESSION   KCOD01002985
VERSION     KCOD01002985.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 462)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 462)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..462
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="331953pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>462
                     /note="ultra-conserved element locus uce-4472"
BASE COUNT          135 a           96 c           69 g          162 t
ORIGIN      
        1 gaaagacgac aagtaataga atctcaggta gctgttctgt ctttactcag cctcatcttc
       61 tcttttatgc caatttccct tgattacctg aactagtgag gctcggtttt caaccactta
      121 tcttccagaa ataatcatct gatcagcctt acaaggttct cactgcactc aacggtttta
      181 atgggtcaag cgttaaatta accctttaac catatcccag gagaatacaa aacttattaa
      241 aaaacaattt actattcagt cattgttaac tttgcagagg agaaggagtt ctttaaacag
      301 atttgcttgt tgttgtgtcc actcatacct tgttttgctg tatctttacc cttactaaca
      361 cattttttta aagcttctta aggaaacatt cttctggttt cttacttcca cggaaacata
      421 aaatgaagcc aaaagctgtg tgtatcttaa gttctatttt aa
//
LOCUS       KCOD01002986             799 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 332065pyr ultra-conserved element
            locus uce-2453, sequence.
ACCESSION   KCOD01002986
VERSION     KCOD01002986.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 799)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 799)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..799
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="332065pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>799
                     /note="ultra-conserved element locus uce-2453"
BASE COUNT          206 a          181 c          193 g          219 t
ORIGIN      
        1 ttagggtggt agaaggtgca tttggaaatg gcaagattac agtggctttc ccagtgtgct
       61 tcagactatt aaacccatat gtatttatta catttcatct ttaatgcata ctcgacctct
      121 gctggtgctt aaccgaatta ctaattaggc acgattcacg gcagcgtaga gaaggtctct
      181 gacgcaatga gccgtgcaga cggactagcc tgtgccgttc ccattattca accctttctt
      241 gttctcttaa aaaaatcagt tggagataaa acgggtaaga ctttggcacg ctgcacggta
      301 tcagtccgag ctgatgcaaa gagtgattgt gaagtgtttt cttatgcttc ccgcagtgga
      361 ttcactattg agttggcttc ggcgttcaca gttgtggtag cttccaatgt tggacttcct
      421 gtcagtacta cacactgcaa ggtatgcctt tgcccagcga ctgcagtcaa ggcagtctgg
      481 actattcatc ttaaaattgt gctgctcgag ccagggataa tggcacggtg aggggaaaac
      541 agccactgac ataggcaggg gtgtgtcagc gcatctcggt catgccagca acacgggaaa
      601 gtaatcaggc ttcctgcatt ggaattggaa ctggccacag cataaactcc atagctgttg
      661 gtaaaaacag cacttacaaa catgacctca attttaaagc aaatgattgc aaggaacagc
      721 ctggtttcct ctgacggtgc catttgaacc tggtcgggta acatttctcc cttgttcaga
      781 ggctgcgcac cattcatca
//
LOCUS       KCOD01002987             730 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 332169pyr ultra-conserved element
            locus uce-7257, sequence.
ACCESSION   KCOD01002987
VERSION     KCOD01002987.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 730)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 730)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..730
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="332169pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>730
                     /note="ultra-conserved element locus uce-7257"
BASE COUNT          204 a          151 c          134 g          241 t
ORIGIN      
        1 cactggtgca gcaaagatgg ttcattttcc tatgaagatc ttcttctgtg gttgctttcc
       61 tcagaatttc tgaccccagc agaatttcct tctgaagtac tcatcatctc catgtgcctt
      121 tcctagcagc tgtgtctgtt ctgtactgaa cactagttgg gtacaagagc actgcagggt
      181 gagcaataac tccaatagcc tgtgctgata catggtgtcc atatggacag tattttacat
      241 taaggcattt ctttactgag tttgatcctg gccccatgag tcatagctgt caagggattt
      301 gttgtaagta atggtcattt gtgtttcata attatcttga ataaacacaa ttagttccac
      361 attctgctgt tttcttccta aggcatctgt aaacattctg tactattcta gcaaatggct
      421 tttggcaatc attagaaaat aaaacccaaa gcaaaatggt tctcagtgga tccttttaat
      481 ttattctaag gagcatgccc aaaggagtaa tgagacctac taggcagtaa tggcaaaggg
      541 atattatctt tcacttagtt aaccattgta acccactttg aagtatctcc aatcacagtc
      601 ctcatgtggt taaaagagaa catgcactca aaagttttca cttcagggtt tctcccataa
      661 ccaacctaat gtatttggta taggaataat gtaggcatct tacttccgtt cttccattaa
      721 aaggatatcc
//
LOCUS       KCOD01002988             619 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 332279pyr ultra-conserved element
            locus uce-125, sequence.
ACCESSION   KCOD01002988
VERSION     KCOD01002988.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 619)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 619)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..619
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="332279pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>619
                     /note="ultra-conserved element locus uce-125"
BASE COUNT          206 a          136 c          113 g          164 t
ORIGIN      
        1 cacagtttca tccttttaat cagaagtaac tggtctcaag caatgatcct ctttttcttt
       61 acagttctaa gcaatacatg aagaaaatgt taacatgaag aaaagtggga gatgggaaaa
      121 tgtaaacaat aagccccgta aaactcacga acaaaccagt acattttgaa ttgctctttg
      181 gtaactgatg aaaaaaagtg ttatgaggca aatccttcac tgggtcactc actggggaga
      241 ctggtaaaaa taaattgcac agctctaatt ttcctagcag cttccatgct attctttgaa
      301 actgagtaag aaacccttgg cctaatccca agagccaatc tatagtaaat agtgcacact
      361 taatgcctaa gttccttttt agcaccattc agacagtgac ttcagccaca cagcttagtc
      421 atagcagaca tttttgtggt gaaagcatta aacccacatg cagctctctt tctgtggcca
      481 ctgggggtca tgctcctttc ccattagctg aataaatcat aaagtctgca cagaccacac
      541 aagaagcaag gctagcaagc cacaggcagt gcctacagcc tgctatttct tttcagaatt
      601 gaaaaacaag agagaaaca
//
LOCUS       KCOD01002989             692 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 332389pyr ultra-conserved element
            locus uce-3659, sequence.
ACCESSION   KCOD01002989
VERSION     KCOD01002989.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 692)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 692)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..692
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="332389pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>692
                     /note="ultra-conserved element locus uce-3659"
BASE COUNT          219 a          144 c          127 g          202 t
ORIGIN      
        1 aggtctgcat cattttgcac cagatctgtg ttaactgtga cttttaaata atcagcctca
       61 ctaaagacta atcattttga cagtgcattc tctgcactgc ccatatactt ggaggctgtc
      121 ctcaaaacac tgaaagctgg gacaatattc atggttaaga aaagtccaga agcagccaaa
      181 caggtgggca cttctttcag agatagaaga ccttttgtac cctagttcta tcctaggggg
      241 gctacacctg agagagaaag tgaattatca atgacacttt tttaaagaat cagtggttta
      301 acactaattt ctaatcagat cctacagaaa ggaacagctc gcatggcagc tgtacttttc
      361 ccagggttaa ttacctttca ctgctctcta ctaatgagtc agctgttcct gtcatcacac
      421 aactacactg tgttcatctg tagctctagc tgtggacaaa cacagtagct agagccctgt
      481 ttacatattg gcgaggtttg ttgtgaaaag aatttgcaaa gcgaaatact taaaactcct
      541 tccattccca tttttcatgg aaacaatttt caggcaaaca ccatattttc caggttacta
      601 aatacatcaa caggagtaga aatctaagga cataaaagct gatgaaatgc ataataattt
      661 atataaggaa gattagatcc ctgtagccat tt
//
LOCUS       KCOD01002990             651 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 332503pyr ultra-conserved element
            locus uce-5433, sequence.
ACCESSION   KCOD01002990
VERSION     KCOD01002990.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 651)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 651)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..651
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="332503pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>651
                     /note="ultra-conserved element locus uce-5433"
BASE COUNT          201 a          122 c          120 g          208 t
ORIGIN      
        1 tctgcacagc gtgcaaccat gctctgctat caaattaatg ttaaaatatg tatgtcctag
       61 cttctgattt ataatatctt tgacaaatag taaaaaggac aggcatacca taaagtttat
      121 gtatagggtg atggcatgca caatgatgtc tcataaagaa taaagaaaag ttatttattc
      181 ttgtgattca agaactaaaa tacagataga ctggctgcgt gcacagaatt tttcataaat
      241 atcccacagt gcaccctgtt gtacagcagc catacattaa ttagagcatt cagcagacac
      301 tgcaatgtgt tacactcacc caagtgaatc ttcatttttc acatgcaggg cctcactaat
      361 taaaatcagc tttgcaatta aatgtggaaa attgtgttaa actttcaagc gtgatttaga
      421 tgtttatttt tagggtattt tattttgatg caaatgaatt ctccatcaaa gtgagaccag
      481 taaaaggaag gtatgaagat ttctcttttt tgtattatag atgctcctct cggttgcaag
      541 ttgcaatgct ccactatctc tgtgccagta cctggccctg ttccaatgct tttagtgagt
      601 gctatctgtc aaggcatgaa taatacagcc cctaggctgt cggcagaatc c
//
LOCUS       KCOD01002991             750 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 332615pyr ultra-conserved element
            locus uce-3797, sequence.
ACCESSION   KCOD01002991
VERSION     KCOD01002991.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 750)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 750)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..750
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="332615pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>750
                     /note="ultra-conserved element locus uce-3797"
BASE COUNT          273 a          140 c          148 g          189 t
ORIGIN      
        1 tgtaagacaa actattcaaa aataatgaga catccaataa aatgaaaatc ccatgtacat
       61 acttgacatc atcgaagaca ctcatctgca gcttcaggag atctgccact tcctttatta
      121 actccaagcc cttttccaca ctcagggggc tgttgaaagg gagcaagaaa acagagctta
      181 aaaaatggaa ctcatcaata cttgagaggc taaaggtccc agaagagtta tcaccttggc
      241 ctctttgagt ctgaaagcca ccactaactg tattcctgtc acatagtgat cgtgatatca
      301 agggaattgg gatcaggtgc ttcttcaggc atgatgaatc acctgaattt tccagcaata
      361 agacaaacaa taaggtgcaa atggaattgt taggaagtgt aatgggccca tgatgcagca
      421 accagttcat ctcagttctc aataaaaaat gtaataaagt aaaaggacag aaagaaagaa
      481 aaggattgac gagacaagga gggaaacaaa caatgaaagt caaattgaag gctcagtatc
      541 aaatggacaa gtgaaaagca tatttttaaa ttcattagat tttaaaatga atctttgccc
      601 agtgattatg gatttgaaag taaacaatgg agcaaggcac acagtccaga ggacactgat
      661 tagatacata ggatttagct tggtgtgtgc atacactgct gacagaaccc cctttaaatc
      721 tttttaacct ttgtcaatgc cacatttaca
//
LOCUS       KCOD01002992             751 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 332726pyr ultra-conserved element
            locus uce-3857, sequence.
ACCESSION   KCOD01002992
VERSION     KCOD01002992.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 751)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 751)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..751
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="332726pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>751
                     /note="ultra-conserved element locus uce-3857"
BASE COUNT          255 a          134 c          126 g          236 t
ORIGIN      
        1 gtattgggtt acagttatct tcaattaaaa aactgtttat ctttgaaaat acgtatctgt
       61 tactgacaag ctctgaaaac caccactcca agtctgtcag taaaaccaaa tgttaaatgg
      121 aaaatatttg ccaggattta aaattagacc tacacattac ttacagatgt ttcaatgaaa
      181 aacacttgaa actcaaccac atagagtaat aaaccccaca atggtgtatt ttttttatac
      241 tccaagttaa tttttattgt ataagtagcc atacgaagaa gccattgcat actgcttaaa
      301 ttaaatgtgg aggaatgaaa tcagcagtat ccctttacag catatggtcc agcaaatcaa
      361 attataaagc tttccacatc tcattaactg caatgagtac agtgagattt ctaataagtc
      421 acttcttttt catgtgagag gtgagcagtg acttattgta actattctca caggatgacc
      481 cttgcgctga aattaagaac taatctaaaa tgggaaaggt catttggtca agtctgatca
      541 taacatttcc tcgttattgt tttagttggc attgaagcac atgctttccc agtgcatcag
      601 ctgaaaaatg cctttgataa tttcactgac agtgagtaac ccacacactg ccatttaatg
      661 agtttgggct ggattagctg acaataaaga atacagtata aatgctttta tagaatgagt
      721 ttttcagcag gaaaatttca tgcaggcata c
//
LOCUS       KCOD01002993             287 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 332834pyr ultra-conserved element
            locus uce-173, sequence.
ACCESSION   KCOD01002993
VERSION     KCOD01002993.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 287)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 287)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..287
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="332834pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>287
                     /note="ultra-conserved element locus uce-173"
BASE COUNT          104 a           58 c           40 g           85 t
ORIGIN      
        1 ataagtaaaa cttcatctct tcctaacatt acatttgctc tgatgtattt tctgaaagcc
       61 gcccaagtat aactatttat tttaactaaa gtaatcaaga ttaatgtcag cagttatgac
      121 acacgctgtt tgctaaagaa cacatagaac aattgctcaa ggcaagcttc attaagaaat
      181 cagataaaat tagtaaaact gattatattt caaaactcag cagcggcagc agctcaaatt
      241 gccattcagg agcctccaat taacacaatt ggtcttgttc acaatca
//
LOCUS       KCOD01002994             350 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 332933pyr ultra-conserved element
            locus uce-3734, sequence.
ACCESSION   KCOD01002994
VERSION     KCOD01002994.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 350)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 350)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..350
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="332933pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>350
                     /note="ultra-conserved element locus uce-3734"
BASE COUNT          110 a           62 c           60 g          118 t
ORIGIN      
        1 aaaaatttca ttttgattta gggttgcttc atttgtgcat atatattttt acaaattact
       61 tggatggcct taaattcccc aagtagagag aaatgctttc catggagctg cttatttcca
      121 gtaacccaca tcagagctga cacatgaaaa atggtgaaat tactgaaggt agtccagcct
      181 gaataaggac taccttatta gttcaggtac ttgcatcgcc ctaattttca tattaatcat
      241 gtgtccatct ttctttgaaa tagggccatc atgcttcatg tcagaattta gcatgtaagt
      301 aaaattcata gtgcttcaaa tctcacttga aaacatttgt atgaagagaa
//
LOCUS       KCOD01002995             693 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 333041pyr ultra-conserved element
            locus uce-3752, sequence.
ACCESSION   KCOD01002995
VERSION     KCOD01002995.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 693)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 693)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..693
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="333041pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>693
                     /note="ultra-conserved element locus uce-3752"
BASE COUNT          214 a          144 c          124 g          211 t
ORIGIN      
        1 taccctccag gtacctggtg gctttttgac tgtcatgtgc tcagaaagat ctctctctga
       61 atatgcctct gaatatgtaa tgagtttgct ttctttaagg ccaaacaaga aggcaatgag
      121 ttgtacagtc tggtctgctt tgttttcctc aagtgaaata tgattttaaa cctaaatgct
      181 gacaaatatt taaaatattt tgtagttggt gaggttttcc acagtgccgg tttgttttcc
      241 attacatctc acaactctaa gtgctcaatg acagcctgta gaggtttcgc cataatccac
      301 ctttatccat taacagacac tcaatcacta aagtgcttac tagactaaac atatttatcc
      361 aaccaaatca cactttacaa tgcaatgctg ccaatcagac cccagctatt aacgaggaac
      421 tgctttaagg ggattttggt gtttgtgctg tgaagagcat gcttacctcc aacaaaccac
      481 taaaccaaat taacatagct gtatcctcat aaaagaaacc agatatcctg ttgtgaaaat
      541 agaaagcttg gtaggacagg gctcctttga tggctaacag tgtggcagac gaaggcttca
      601 gactacaaat ctggttacca caggctcatt acaaaactct agcattaagc ttttgctgac
      661 tttaaaaaca aaataaaaat ttatcatttg ggt
//
LOCUS       KCOD01002996             366 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 333142pyr ultra-conserved element
            locus uce-3475, sequence.
ACCESSION   KCOD01002996
VERSION     KCOD01002996.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 366)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 366)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..366
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="333142pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>366
                     /note="ultra-conserved element locus uce-3475"
BASE COUNT          102 a          102 c           92 g           70 t
ORIGIN      
        1 taatgccagc ccatctgcca agccctgcac gagctggcac cgtgcctccc gcctgctgcc
       61 gctgctgtca cccacctgat ccttggagac ctgctccgac ggagcgttca cgccaagctc
      121 ttccagagga tagacaatct gtcgtctcgg ccgcacggga gccatgtaat gaagggcaga
      181 tgtcagggaa tgggcacagg gacgctgaaa ctgaaagaca gcgatccata tttcagcaga
      241 gagaatgtca gagcagtgca tcacagatgt ctgctgcatg gctttgcaaa cacacaattc
      301 ttagctctgt tggctaaatc tgagacaaaa atcagcaaat aaacaaacat actcagagca
      361 gaggaa
//
LOCUS       KCOD01002997             808 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 333246pyr ultra-conserved element
            locus uce-7227, sequence.
ACCESSION   KCOD01002997
VERSION     KCOD01002997.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 808)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 808)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..808
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="333246pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>808
                     /note="ultra-conserved element locus uce-7227"
BASE COUNT          179 a          199 c          177 g          253 t
ORIGIN      
        1 actaaccaag agtcacgagt attttgtctt cgcatctggg aaaggtacct ctcctcccag
       61 gcagaggctg agctttcagt gtgatgatta caacttagta acaccaacag gaaaactgag
      121 cgaagactgg atttcaaaag acaggcaaca ctctcctgaa gtgccaagat actactctta
      181 ggcctggaac aactcattat cagcttacct gttcattagg ctcaaagctt atctcttctt
      241 tttccgtcct catagctatt aactttgtgc taccggaagg gtctgtctta ctgtccaacc
      301 gctccagttt tgggggtatg tctggtaaac caatatcttt agtatcatct ttatctagca
      361 agtagcgaag tagtgcattg ttattcttct taggactcgc tggctcctgt ttaacagtca
      421 cctctgaacc aggagctgtg ctactggact cctggttcag ttctttgcct gtggcctctg
      481 ctgtgagctt ggccaaatct acaggagaac tactgtcctg caatagtctg tgcaaaattt
      541 tatgcttctc cttgagcgag gttccatgtg ctgaaccaga cccaggcaac cctcccgcag
      601 agtccttgct aatgtctcct atggtactgg acaaaggtga aggctccatc tgatctgatt
      661 tggtggtcag caattgtaag agctttgtct ggctttttcc gtcatgcagt ttattttgtc
      721 catcaggtct ctcgccactg acaactggtg gcatgttgct atcgctgttg tctttctgtt
      781 ctcctgaatg gcagctgctc tctgcttg
//
LOCUS       KCOD01002998             389 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 333350pyr ultra-conserved element
            locus uce-5514, sequence.
ACCESSION   KCOD01002998
VERSION     KCOD01002998.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 389)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 389)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..389
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="333350pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>389
                     /note="ultra-conserved element locus uce-5514"
BASE COUNT          125 a           76 c           59 g          129 t
ORIGIN      
        1 taataaaatc tgactttcag gcaaaccttc ttgtatataa aattgaagag tacaaagtgc
       61 caagggcttg tattagtacc atccattttg ttaacatttt tccaatttat cttgcgttac
      121 gaaccctcag agtactatgt ctattgtaaa tatttaagca ttactgttga cataaagata
      181 atgctgacaa attgagttaa catttctgct gaggattact gaccatgtgt agtgcagaac
      241 aactttaaca cccacaccaa gcgctgcgct catgccaaac tctgtttagt ctacaataga
      301 gcagtgtccc tcaaatgaat ttttagcttt gatttacaca aaacatgaaa caacctttct
      361 tggatcaatt aattgtttga ctttcctaa
//
LOCUS       KCOD01002999             770 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 333456pyr ultra-conserved element
            locus uce-2355, sequence.
ACCESSION   KCOD01002999
VERSION     KCOD01002999.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 770)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 770)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..770
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="333456pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>770
                     /note="ultra-conserved element locus uce-2355"
BASE COUNT          223 a          133 c          139 g          275 t
ORIGIN      
        1 tcatttacaa tgttgattac cttttcttga tggtttggct tcagaaacat gctgtggaat
       61 ttaaattctt ccccctccca tgctaatgtt ggcattattt gtgtgtaaac acattacatg
      121 ggatagcaga aatgtaaatg agatttcaat gttgagttga tttataaaca gccagtctcc
      181 taatttattg aagttgtctt tgtgtcgttt gcacatgatt agcagcatat accatacata
      241 gggtgccctt ctgtaacatg ttcagaaaaa agaattgcaa actgtatacc attataacac
      301 caaatgaaga tcttattgag cttcaagatg ctttgaaaca tgtagttact aacttaactc
      361 tgcctgtgaa cttgtcctca ttaactccat aattagcaag atcatgtttg atcttggagt
      421 tcattagaca ttgcagctgg aagattgttt cagttttaac acatcagaat agacaattaa
      481 agtgataata aagaatcaat atcacttccc tgtttcttag attttttcaa ggttgcagtg
      541 tgcctaatta aacctggttt gaaacagtga aaaagtaaaa agtaatgtgg tcacatttat
      601 tttggtttaa caggctattt tttgaaatgt gccctgggaa atagtttcta cgttgggatt
      661 atttcagatt cagctgctga cttaagactt gagcagatat tattctcgtg tgccttctat
      721 tgtctgtgcc acatgcaagt ccccttccct ctttttactt tgtgactgga
//
LOCUS       KCOD01003000             646 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 333568pyr ultra-conserved element
            locus uce-6633, sequence.
ACCESSION   KCOD01003000
VERSION     KCOD01003000.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 646)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 646)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..646
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="333568pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>646
                     /note="ultra-conserved element locus uce-6633"
BASE COUNT          179 a          138 c          141 g          188 t
ORIGIN      
        1 cggtggggct ctccccaaaa tccggcatta ttgcagatcc agcctcttcc accaaacaac
       61 agatgcagcc tctaatgcaa atattgccat ttccctgctg aattagcctt gtcacttagc
      121 ccagaagctg gcagcgttaa gccagcttgc attttaattt ggccctgaag ttacttattt
      181 cattattgat caaacataat gctgaatcaa tgttcatctt gttacctggg ccatttccat
      241 gtaatacagt gatagcactg cctggagtta ctcattccca tcccaaagtg actttaccat
      301 aaaatcaatg cttgtttgtt actgatataa ggcagtatct gtgggatgaa gagcgaataa
      361 agcagttacg ccactgcgat ctgaaagttt ggacggaata tgtacgtgaa taaagacttt
      421 gatatttaaa tgtattttat cggcatcaaa atcgtcctgg ccaggccgat gggacagaaa
      481 atctcaggct gcaagatgac gggctttgat actgtaggtg ttgccatttg tagacgctac
      541 ttgggaccta atgcgggaat cgtttctcta cccagagtat cattacacag cagatgtggg
      601 ctgtaagctc ttccgggaag ggactgtttt ggaaaaatag taatta
//
LOCUS       KCOD01003001             747 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 333681pyr ultra-conserved element
            locus uce-6296, sequence.
ACCESSION   KCOD01003001
VERSION     KCOD01003001.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 747)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 747)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..747
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="333681pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>747
                     /note="ultra-conserved element locus uce-6296"
BASE COUNT          211 a          158 c          160 g          218 t
ORIGIN      
        1 tatcgctgtt ggttttattc attatatttg acatattaag cttctgtatc ttggcataaa
       61 ggacacaata ttgcagcata ttggcaagct catttgcttt tcacagccag tgttgtgtcc
      121 aaatagcagt ccctggggag caacacgtgg atatagactg caggaaaatg agcctcagca
      181 gcaggtggcc ttttgcagcc taatgaacac ggcaatctgt taccagcacg gcgaggcttt
      241 tcaccagaca attaggcaac taagcatgta attattcagg ccaacaagaa gagcctcttc
      301 tctaatttca tcttttcatt gctgtttact cacccacact cccctcatta atgagagatt
      361 ttccagtcta tgctaattgg tttcaataac attcatttcg gttgaaaggg agcgattctg
      421 ttaattggga atcgaaggcg tcttttcatt tcgagtgcgt cctgccatgg aaatctgaac
      481 actctcaaca ggttcgagct aatgaaatta agttacacag ccactggtgg tgtaatagaa
      541 ataaagtaat ttattttcac tgaagcatgt gctataggtc ctgaacaatt aatccagctc
      601 gttcaggaga gccatcgcag gaggcgattt ggaacaaggc tgcgttgctg caattctcag
      661 ggcggtttca ctgctgagct ctccagcaca acccaaaatg tttaatggga acgagaagca
      721 tttatggaaa cactaattct ttaagag
//
LOCUS       KCOD01003002             726 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 333788pyr ultra-conserved element
            locus uce-1299, sequence.
ACCESSION   KCOD01003002
VERSION     KCOD01003002.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 726)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 726)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..726
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="333788pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>726
                     /note="ultra-conserved element locus uce-1299"
BASE COUNT          238 a          108 c          144 g          236 t
ORIGIN      
        1 aatttccagc ataaaggttg tgaaataaga tgaacacagt tctgcatgca aatttggacg
       61 taatgcagtg atgacttaga aggcagtaac agaaaggaag tgaagagttt attgtttcta
      121 tagctctaat atccattaaa agttagttac acagcaggtg aatgttttga aataaatagc
      181 agctgggtga cctgggatgt cagggctcta gacgagggtg tgtgtttgtc aatatatcct
      241 gcatgtttta cagactcctc agggaccagg agaagataca atttcacctt ttctgtgcca
      301 aaacatttta attatatctt cttccaagta cagcggttca gtaaccaagg agctgacatt
      361 gatgcatgtg ttgataaagc tgcaaacatt caaaatgaga ttaacaaaga ttttgaggaa
      421 agggtgacag ctaattttgt acagtattct gcatctaatt caggtcggtg taatgataga
      481 atattttata actgctgtgt catctagaaa gacttttatg atgctttgtg tatttaaaga
      541 tgtatatgaa agtacagttc tttatacatt gttcaaacag gttataacaa catctattgg
      601 ttgtcgctgt aaacaagaat aaatttaagc atttagaagt aatttcacat ctccatctgc
      661 attaatcgca gtaattcctt ttttttaatt caccttcaaa atattgactt cagatgtgaa
      721 atggaa
//
LOCUS       KCOD01003003             582 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 333900pyr ultra-conserved element
            locus uce-2108, sequence.
ACCESSION   KCOD01003003
VERSION     KCOD01003003.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 582)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="333900pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>582
                     /note="ultra-conserved element locus uce-2108"
BASE COUNT          190 a          102 c          123 g          167 t
ORIGIN      
        1 cttcatacat aatgtcatta aaagcgtatt aatctggttc ccggtctctt gggagacacc
       61 ttaagatgat gatattgtgg gggttttttc cccccgaatt gtttaaaaaa aaaaaaaaat
      121 tctagcagat ttggtccctg tcagtcagaa ataattgtgt tcttaatctt gtccctgatg
      181 gatgactcgg agttcagcaa cgggccagct ccaatgacaa atacaatatt aatattcatt
      241 aactgctttg acaatgctaa ttttgatgca gtagtaaagg gccttccaaa gttagcggcc
      301 aaagcatcag agctgcgcaa ggtggcaaga taatttgtgc tggtttgctg agctgaaggc
      361 ttttaaagtc tatagcaaaa agctaggtac cacaaacaaa aaagagaaag ggaaaaaagt
      421 tctgaagcat tggaaggcag ggctgcggaa ataatacgat cacagtccgc taaaaaattt
      481 gacacctctg atgcagtttc tttgagtgaa atttctacaa agttgcaaca aaaaagcata
      541 gcatggtaag tcagcacatt cgtgattttg tttaatcttt tt
//
LOCUS       KCOD01003004             392 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 334007pyr ultra-conserved element
            locus uce-4687, sequence.
ACCESSION   KCOD01003004
VERSION     KCOD01003004.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 392)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 392)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..392
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="334007pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>392
                     /note="ultra-conserved element locus uce-4687"
BASE COUNT           74 a           98 c           85 g          135 t
ORIGIN      
        1 tctgtatgtt cactttccct acccctgtct tctgtttctc cctcattttt ttttcctcct
       61 ctgtttggct tgctggttcc tccttccttg ctctcttccc tccttgcaga acaagatggt
      121 gaaaggcagc ctcagcacag agcagtcgga gcgggggtga ggggggaagt gtactcctgg
      181 gaatggatat aaaagcaagc acaggtgagt tggggagaat ttccagttcc acctgctgcc
      241 ttacatccag tgccatcccc atttctgtga gaaatcaagg tgcttttgtg tacattcaga
      301 aaatttgtat tctctgctac catcctgttc attttttgta tttctgcagc agttctttct
      361 gttaagcagc ttgttagctg ttacaactgc ct
//
LOCUS       KCOD01003005             632 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 334114pyr ultra-conserved element
            locus uce-3013, sequence.
ACCESSION   KCOD01003005
VERSION     KCOD01003005.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 632)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 632)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="334114pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>632
                     /note="ultra-conserved element locus uce-3013"
BASE COUNT          170 a          138 c          124 g          200 t
ORIGIN      
        1 caagtatttc cgctttttga tagaggaagt acaaagcaat ctttctactt cattattttc
       61 ataaaatttt tagttttaag ggttaaaata aaatgagcaa cctgcaatac tgtggtatca
      121 ttgcagataa gttcttggta aacaattgag atgatatctg cttcttcaga ttaaatatat
      181 ctcgtcctca gatttatact ggcactttat gggttctgca aatgactgtc tcagcactgc
      241 aaagtaattc caccctgtca tatttgtctt tggaaattgt aacaaattat ggtgatttat
      301 aacatcaaac tcaactcttc cattttttcc ccacatggga acgtcgctga tggcgagatg
      361 ctgggccatc catttaggct gtgtggaggg tgacagtgaa acatgtttca tctctcttgc
      421 ctgacactct ctttcccttt gaggggaggc tgtcagcata actcaaactg tcaaggcacc
      481 tttgtaaggg gaaacaaatc taaagctctg ctcatgccta ctaatgaggt gtgactcccc
      541 agccctgcct gcctggcctc gatgaagctc aatgcctctg accccttctc agtcaataga
      601 agtcgaacca tcatttgtct tggagtgagg ac
//
LOCUS       KCOD01003006             733 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 334225pyr ultra-conserved element
            locus uce-1026, sequence.
ACCESSION   KCOD01003006
VERSION     KCOD01003006.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 733)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 733)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..733
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="334225pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>733
                     /note="ultra-conserved element locus uce-1026"
BASE COUNT          180 a          152 c          190 g          211 t
ORIGIN      
        1 acttccattt cacaacagcc acaaaaaatg ggactctgct gttggcaaga gagcgcttcc
       61 tccggagacg tggacctctt ggctccggcc tctggtcgag gtgtgtgctc agagtgggat
      121 ttggtggctg agggagctgc tccaccaggc ttggtctggg gaggattttc tccatggctg
      181 gtggactctt cctggctgga ggagccacgg aaagggagat caacagggtc ttccttaagg
      241 ccttacctta cttttagaca gttgtcatta tctttgtcta aaggtcatgg ctaaattgaa
      301 taaaaggaaa gctgtgtgtt cctgtcgatg cacaatggca gtattgactt tcgtaatcca
      361 gtttgctgag gggtgagaga attaaattag atatctaagc acagaaattg agagcctttg
      421 aaaacaaaga taaggagaca gcctgtattt tccttttcct gggagctctg ggctcaagat
      481 tttgcaggtg tgtcatctga tccatggctt gcatcgatca aaactgtgcc aatgcatatt
      541 taattagcaa ggggaccctg gatgcattat ggccatcatc cctatattga atggactgtc
      601 agactttctg aatgcctccc caccgcttcg ttgtttgggg agcttctgca ttttgtctga
      661 gcagctaaaa gtttctttgt ttttagctgg tgatgcatac agcaccactg aggagaatac
      721 aaacaagtaa agt
//
LOCUS       KCOD01003007             795 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 334334pyr ultra-conserved element
            locus uce-5246, sequence.
ACCESSION   KCOD01003007
VERSION     KCOD01003007.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 795)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 795)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..795
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="334334pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>795
                     /note="ultra-conserved element locus uce-5246"
BASE COUNT          229 a          146 c          157 g          263 t
ORIGIN      
        1 tggaagtcac acagtatgtt gctgaacagt gaaaatgatc attagaatta ttttaaacag
       61 attaagctat tgctgatcac ttgttctctc tcaaagcttt agtaactgtt tgaaagagca
      121 aaggacttca aaatacccca tcttttcctt gagtaactta aatgaaatct gagcttgaag
      181 ataaggatgt tgcaaaaaga caccgaaaag acttgaatgg gttaagccgt atctggctga
      241 gtcccaacag acataaaaat cacctgtgcc tgctctgaaa taaatcagtg tccttttctg
      301 ctgctgccgt tgtctggaaa taatgcaaat gcaatgggcc tgcagtgaca ttgtgccgca
      361 ctcgaaggat acacataata aattgtcccc taatactgtt aaagagacat tttcgtctta
      421 ctcagtagct tttgaggttg aactgtgcta cttactcgtt gaggattgtg atatggtgtc
      481 atgtcattct gctttattat ttgcttagcc tcttatttct tatatgcaca tttgcttctt
      541 gagtttaaaa atgcattttg ctgcttatgc tcaatgataa catgtttgcc ggcttggagg
      601 gaaaaaagaa gagacttttc tttccacttt gtttctgttg ttttaatcat ttctctccaa
      661 cagcagctgg aacagatcgt agattcatat gatttggttc tactgcattc atcacttgga
      721 aaaatgcaca gctgtgttaa aggaagacag aaagaatttg tctgcccagt gggaagctat
      781 tgctgttcca taatt
//
LOCUS       KCOD01003008             414 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 334440pyr ultra-conserved element
            locus uce-3064, sequence.
ACCESSION   KCOD01003008
VERSION     KCOD01003008.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 414)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 414)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..414
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="334440pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>414
                     /note="ultra-conserved element locus uce-3064"
BASE COUNT          152 a           59 c           69 g          134 t
ORIGIN      
        1 tatttgcaga aacgttttta atgctttttt aaatgagcag acaaaataat gaagaaataa
       61 aaataacaca ggtgtagtca tttacattat agatggaaga ctgcataagc cgctgatgtc
      121 aagatggctt ttctaaagtg tttatatgaa aactgacttg cagcttactg cctgaaaatc
      181 tcaccttgaa cttattgtga gggcaataat aatatgaaaa aatacagatg gtatcccgtg
      241 ctatctggaa actccagttt aaacagacga agcttaatac atggtagatt atttatatca
      301 aagctaagta ttaatattcc aaatgctttg attttagatg actgaacact aaatgaaatt
      361 aactatattc tcggttactt acatatactg aatgtcaaga gaaatttgtt ttac
//
LOCUS       KCOD01003009             735 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 334551pyr ultra-conserved element
            locus uce-8017, sequence.
ACCESSION   KCOD01003009
VERSION     KCOD01003009.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 735)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 735)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..735
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="334551pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>735
                     /note="ultra-conserved element locus uce-8017"
BASE COUNT          197 a          198 c          135 g          205 t
ORIGIN      
        1 taagttagtt taaaacaaaa taatagggaa aaaaatcccc aaaaaatgtg cttgtccctg
       61 ttgtggtgtt ggacttagca gcacagttat tcttcttgga actggctgtg caagtcaacc
      121 acatgaacca agcttttgcc tgccggtgga aatttgatga atttttccct ttccatgcag
      181 gcatcaaagc atggattgtc gtgagggaga gaagttgtta gggatataga cctttaagca
      241 gcacttgagc aagacaagtg tgcctgtttt ttctacagag tacagttgac aaaaagcgtg
      301 ccagccatca tgagagcaat ggctttgccg gtcgcattca cctcttgcca gatctcttac
      361 agcaaagcca ttcctcctcc acttcctcca cctcctcctc cccatcctcc agccagccga
      421 cacccaccat gtccccacag acaccccagg acaagctaac tactaatgag gtatgtctta
      481 caccacagct ggctgctttc attatagcag cattgcctag tagctagttt gcaaaggaac
      541 tccagccaat ctcccctgcc tgtcaccttt gttcccacct cccaaataac acatttcagt
      601 tctgtgtaag aagcccttaa ctctagagca gtcccatgcc aaacttgcca gtttactatt
      661 tttgcttcct tttagtgagt cattaattgc atggcgttca ttttaaacta aacttgacta
      721 ctcaagccaa tactc
//
LOCUS       KCOD01003010             582 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 334664pyr ultra-conserved element
            locus uce-4587, sequence.
ACCESSION   KCOD01003010
VERSION     KCOD01003010.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 582)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="334664pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>582
                     /note="ultra-conserved element locus uce-4587"
BASE COUNT          175 a           94 c          129 g          184 t
ORIGIN      
        1 tttttttgaa ggagctgaaa agaaaaaggt cttggaatta caagcagtta gacttggctt
       61 ttttgcgtaa tgactcctgg tatcccactg tgagaagact ttccccagct tctcgtctgc
      121 attcttcctc gttccctgcg ggagaatgag ttggatttgt ctgccatatt cacagcaatc
      181 gaggtgatcc aggttgaaag aaaatcaata agatgtgtcc atttatgcct cacaaaggaa
      241 gaaaggtcta aagaacagac atgggacgtg attcaagcac tagagactta ataagacttc
      301 tacttgtgtt tgaaggggat ggtaatttat attttacttt gaactttttt ttatgcttca
      361 taactattgg gattcgggct gacatgggaa gcaaggaaaa gaaggtttga tgctgtctta
      421 gaagacctaa cccatttggg aaggccatgc tcaaaagttc aaaaaatttt gttttagaaa
      481 agattaaaga gacatcatat catcgtactg atttatcgct attgataaaa ctggtttaaa
      541 gtattttgga ttggggtaca atgtctttct tcgagaacag ct
//
LOCUS       KCOD01003011             340 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 334771pyr ultra-conserved element
            locus uce-4018, sequence.
ACCESSION   KCOD01003011
VERSION     KCOD01003011.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 340)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 340)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..340
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="334771pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>340
                     /note="ultra-conserved element locus uce-4018"
BASE COUNT          108 a           39 c           60 g          133 t
ORIGIN      
        1 tatggccact gtatttgtta attatttgca atttgaaggt acaagtagag gtttaaattt
       61 ttgttcttta aaaatgcatt taagttgtaa acgtctttaa agcctttgaa gtgcctatga
      121 ttatatgtga ctcgttgcag actggtgtta atgagtatat aacagtaaaa gaaaatgttg
      181 gtattttata agcacagaca attctaatgg taacttttgt agtcttacat ggatagacat
      241 aattgtaatt tgggaacata aacactactg aataaatcat gtggcctaat actgagaatt
      301 catatacttt tgtatgtttt tcattttatg tctatttgct
//
LOCUS       KCOD01003012             572 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 334876pyr ultra-conserved element
            locus uce-7786, sequence.
ACCESSION   KCOD01003012
VERSION     KCOD01003012.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 572)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 572)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..572
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="334876pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>572
                     /note="ultra-conserved element locus uce-7786"
BASE COUNT          190 a           93 c           98 g          191 t
ORIGIN      
        1 atttaaagaa accagctatc ttactgtaag aaaaatactc taaggaatgg aattcaataa
       61 ttccattaca ttctaagatg ccaaatcatc tgtgagtggt ttctttttaa aagaaatcaa
      121 aatataggac agatgttgga caaaccacat ttgaggtcta tcacacactg gcatttttca
      181 aattattttg gctcatctat tgaataaggt gtattttgct tgattttgaa aagggaaaca
      241 tcaggaaata tttaaaggcc aattgctgcc aattaacttt gatcagcaaa agttgcattt
      301 gaatctttta gattcttttg ctgtctggaa taacacacta ttctaaaatc tagcaaaaca
      361 acaatgtgat gattaatgtg tgttggcagc cccaccacaa gcttgcttaa cagctggatt
      421 ttaaataaac agctgtcttc actatgatgg gaaagaaatc tgactgtttt catgtttttg
      481 tgtcattaaa atatgatcag aaatttcttt tttccctttt agatgaaaca gccaggcatt
      541 acagtgacag tctctttcag cagtttggag ag
//
LOCUS       KCOD01003013             794 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 334986pyr ultra-conserved element
            locus uce-5425, sequence.
ACCESSION   KCOD01003013
VERSION     KCOD01003013.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 794)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 794)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..794
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="334986pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>794
                     /note="ultra-conserved element locus uce-5425"
BASE COUNT          247 a          162 c          163 g          222 t
ORIGIN      
        1 tattctaccc caaaagatgg agcaaaaaca ggttaccccc tcctcccctc aacactcttt
       61 agtcccacag aacgactgca tgcttcagca cagatttctc tgctagttgg atcccaggag
      121 gccttattga gtgcaatgct gctcagggag ttgcagctgt ataaagtgaa aaaatgtagt
      181 ttgtacgaat tgttctttac cttggtttgg gttcagcatg gcagctgcac tccgactttg
      241 tgtgtgacag cacaaaggac agcaaaagtg aaaagcaagt cagcaagtag agagacaaaa
      301 gcaacgatca gctaatacag ctccacatgg cctaactaat ttatgagaaa aaaactgttc
      361 tgttcattgg atcagcactc tgaggaggca ggtggaattg taggaagttt tcattgagtc
      421 tctggagcaa ctaaggaagt cactagagat tcttctcagt ttgaacttta tcagggtcta
      481 cgcttaatca atatggtatt ggaaaaagaa ttaattacta aagcagaata aaacagctgc
      541 attttaaact aaggatccat caattcagta atcttccagt tacaggctag gtgccgtgag
      601 gatcattttg acttcatgta atgaggaact gagggagttt cctcatgaac aggctgggaa
      661 ttcacattag cctatttcag ctatttgtca tcagtacaac tcatttctcc ccttccgaat
      721 tacaatttgt atttgatata ctgtcaaacc cacaaaattc ccatattcat ggaactgaaa
      781 gcattaatgt ggaa
//
LOCUS       KCOD01003014             801 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 335206pyr ultra-conserved element
            locus uce-6983, sequence.
ACCESSION   KCOD01003014
VERSION     KCOD01003014.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 801)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 801)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..801
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="335206pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>801
                     /note="ultra-conserved element locus uce-6983"
BASE COUNT          211 a          197 c          165 g          228 t
ORIGIN      
        1 ctgttgctga tgaggctacc agtgacataa ataaactcaa gcagaagatg taagcgagtg
       61 gataaatgta aaggcatctt tgggcagtgc cacggatttg gacatggacc aagagaatta
      121 tttctgtccc ttgcgattcc aatgaagagc acaaaggaga taattagccc aggatgctcc
      181 gcattgctct ttccatcttg cgcacattca tgcccaccaa atgtgaaatg ttcgcctttt
      241 cccctccgac gtgatggttg ttgaacttat ttttagtgtc atttgataag cctccctgct
      301 cgcagagaga catcccactg acccagccac tggtcattgt ctataccagt tcccatcaaa
      361 gcgggcgcgc tttgtcaggt ttcgactcga atatccattc tgcctctgaa gtacagtatc
      421 gaaagtgact ggatcatttg agcctttttc ttcagctgct ccctccttcc tcccccacag
      481 tgtttccgct cacgctaaca taatttggca tcgtcgacgt gacacgacac tggtttttct
      541 aaaaaattat aatacataca ttggcgatgt ttggtgatgg ccggcgctcc cgtaaattta
      601 atttccgaat tgatggaaag aggtctttcc cactgcggaa tcgtacccaa cgcttggcgc
      661 cccctccgcc actgaggaat gcacatacag taataggtca ttcaatgtca aaaggcataa
      721 aaaagatgag caaaatcttc acaggctgct gcttgctgtt gcctttaatt atattaatta
      781 aactttgaaa ttctcatgca a
//
LOCUS       KCOD01003015             506 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 335315pyr ultra-conserved element
            locus uce-1119, sequence.
ACCESSION   KCOD01003015
VERSION     KCOD01003015.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 506)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 506)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..506
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="335315pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>506
                     /note="ultra-conserved element locus uce-1119"
BASE COUNT          148 a          105 c          110 g          143 t
ORIGIN      
        1 tagctagttt acttctctgg cttaaagatt agacgttttc ttttggtaaa gctggctatc
       61 ccaactggct gtattaaaat aaggaagaat ctcaatcaaa aagcctctcc taaggcaagc
      121 tttcttgtta atatgcacca acatgaaagg gtttcttttc atcctataca actacagtgt
      181 gtgtaaattg cagggggctc attggcataa atcttggctg tgacctctga ggtaaactgg
      241 atttacatta ctttctgaca agaattaaat gaaggccttg tggatatatg aacagccttc
      301 tagactgcaa cagatgggca tgaatgtgct ccctaggcaa actatcagtg acatctgtgt
      361 cctccaaatt ctggtggtct cagccaatta gcaggcaaaa cccctgcaca gcttccccag
      421 ccagagccgg aagtgcttct gtttggaaat gggatcaaga acagccttgc tataatgtgg
      481 aggtaatacg acagaaagct gaagta
//
LOCUS       KCOD01003016             481 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 335424pyr ultra-conserved element
            locus uce-7349, sequence.
ACCESSION   KCOD01003016
VERSION     KCOD01003016.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 481)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 481)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..481
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="335424pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>481
                     /note="ultra-conserved element locus uce-7349"
BASE COUNT          142 a           92 c          102 g          145 t
ORIGIN      
        1 tttttgttcg aattgcataa aactgttgaa aaaaaaaaat ttattagctc agttttattt
       61 gcaaggaagg ttcagttgcc ctttatatta ttgttatatc tcaagacaat gtttctttac
      121 ttatgagcag atgtttgaaa tcctccagga gatttttata agactatgga aatgaacttg
      181 gcatgggtac cagtctccca ggtggagcgg gtgaacacaa gccttcttag aagtctcaga
      241 tcaaggctag tcagaaagag caacagagcc cagccaccaa aagcctagtg ctttggtgac
      301 tgacaggtac aggctctttc tgaagcataa aaaggaatgc taaatgatct cactgacaga
      361 ataaatcttc tatttgtttg gtctggacca gatgtgctaa aggctgatgt ggaaatgtct
      421 gctgatgcca atctcagttt aaatcacaat ttggcagctg ggccactctc tgctctcctc
      481 c
//
LOCUS       KCOD01003017             651 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 335531pyr ultra-conserved element
            locus uce-520, sequence.
ACCESSION   KCOD01003017
VERSION     KCOD01003017.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 651)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 651)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..651
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="335531pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>651
                     /note="ultra-conserved element locus uce-520"
BASE COUNT          185 a          120 c          132 g          214 t
ORIGIN      
        1 ggaaggagag ccacgaggca gcaaggaagg gaaataaaac tgagcagggt gggtgggtcg
       61 ggggctgtga gtacgaagaa ggaagagaga ttaaaagaaa tatcaatcaa ttggagcata
      121 ttcactttct cctgtgcagt agattctatc agaagaaaac actgaacttt gtagtgttag
      181 cagcagctga aatttagaat tattgtttcc tcctaacaga agactcattt tccacggccg
      241 catttgcagc ataataagct ttttgttatt ttttcaatta gagtcaattg acctaacaaa
      301 atggttggca attaagtgat ttttgtaatg gtccgggggt aatttagtcg agcttgtcag
      361 ctgtgtttca tgaagccgag atgtcttttt ttcccctctc cctctccctc tctctcactt
      421 actccctctc tctctcaagc ataatggctc ataatttcaa aatcttttcc ttctgtttcc
      481 ctcacaataa ttcgcaatta caggaagttg ttggaggtga ttttttccta ccttgctttt
      541 tgagtcagta attttaaata aaatgtacat acttgtaaaa agggggctat tacagaaatc
      601 actttttgtg taaactcaat tattttatga atagtgacac cagtttctgc t
//
LOCUS       KCOD01003018             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 335640pyr ultra-conserved element
            locus uce-7344, sequence.
ACCESSION   KCOD01003018
VERSION     KCOD01003018.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="335640pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-7344"
BASE COUNT          178 a          110 c          122 g          230 t
ORIGIN      
        1 tttattaccc agtaggtcat atcctgtata tattttaaga acaaacacct ctgagattgt
       61 gacttggttg acatgtgtca ttgctgttgt tttcactaca gctttgtgga aaaactaatt
      121 accttttcat cttggtaaat tcagaggtca gtttaccact actatatcac aacatgacag
      181 ggaacatggg taattaggta ggctgtgtaa cctggatatt ccatggatct cattacatct
      241 tatttagaaa ggctataatt tgattggtgg aaaattaagg catctcctca tgggtcattt
      301 tatctttctg caataataat tcttggcttg attaaaaatt gatccagtgt cttaaagtga
      361 atttattatt gctgcaatct atcacccaca gacagataat ctggttccca tctttatctg
      421 atttgaaaaa tctgtcactt attatgtgtt gtttttttcc caatcattta aattgatggt
      481 ttgctgaggc acggcgtgct accataggct tcttggagaa agcatgtacg agactttcag
      541 ccagtatttt ttactgcaag gaatctgacc gtgtcaagta tcgattggaa ctgtgttgtg
      601 gcatcatttt ctctagattt tggatgcaga gcaataagaa
//
LOCUS       KCOD01003019             795 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 335752pyr ultra-conserved element
            locus uce-7763, sequence.
ACCESSION   KCOD01003019
VERSION     KCOD01003019.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 795)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 795)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..795
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="335752pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>795
                     /note="ultra-conserved element locus uce-7763"
BASE COUNT          247 a          166 c          153 g          229 t
ORIGIN      
        1 ataactggta taaagtaaca aatacatttc tgtagacata ccacttaact ctaaaaaaat
       61 atatacatac atatatgatg gctacaaatg agcttgtgat tttcttccaa aagtatctga
      121 gcaggaagta aaacattttc ccagtggatg aaataacatt catttttgcc aatctaagca
      181 aggcagattt aaattttatg tgtgtccaac tgcttgttcc ccctcagcta ataacctgcc
      241 tgctggaagc atttcaaatg aaaaggagtt cacagttcct aagcccagct ctgaatatat
      301 ctgccatgca tgtaaacaag taaaccatta tgtttcttgt tgagataaag aataccatga
      361 taagtgggga cttttaccca acaaagggct tcctattgcg agtgtggata atcttccaga
      421 aaaccctgtg ttttggcaaa tcacaccaga ttaatctatt aggcatctcc tttcatcatc
      481 aaatttccgc tgcctatcac agtggctgcc ttatcaagca ccctttactc aatagcaggc
      541 ccattcctag gatttcaggt gctggccttc cgagctcaga aaacaggtgt ccccactgtt
      601 ttcaggcagg aaaggtccct gcacagaagc ctgggaaagg gcaggggtat cagctgctgt
      661 tctacctgaa ggaacaggta acaggaaact gttgattcaa tgggctgaag ttaattggca
      721 agcattagtc agcactgagt gttttttgtg aattaaaaat cctcataaga atcctttctg
      781 acaaaagttt tggaa
//
LOCUS       KCOD01003020             483 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 335858pyr ultra-conserved element
            locus uce-6648, sequence.
ACCESSION   KCOD01003020
VERSION     KCOD01003020.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 483)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 483)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..483
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="335858pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>483
                     /note="ultra-conserved element locus uce-6648"
BASE COUNT          171 a           87 c           71 g          154 t
ORIGIN      
        1 agagcattcc acttttatga ctttggataa aaatgcaaat gaatttatta gcttaagcat
       61 ggcagcaata gaaatttatg cacatacatt taaaaaacag accccttgaa aataacgcag
      121 ttgcaaccta ttaattttct tttttgacag tttttaaaat tcccctaaaa aaatgaaaca
      181 gcatgaatac tgtcaatata tcacaacagc cacattaggt tttgtgatat acatcataat
      241 ataaagagca ctattagagc acaacctggg aaccattaaa tcattctaaa tcactgttac
      301 attccattag tgtcaatggt gaaaccacat aataggcttt attacaaact tcaccttggt
      361 aggccattgt ctctaataac cacttctctg tgatgtggta tcatacccag aaatccaggg
      421 agataataaa ggctccctta tttctttttt attggatggg taaagttaaa tttagctgta
      481 agt
//
LOCUS       KCOD01003021             540 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 335964pyr ultra-conserved element
            locus uce-897, sequence.
ACCESSION   KCOD01003021
VERSION     KCOD01003021.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 540)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 540)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..540
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="335964pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>540
                     /note="ultra-conserved element locus uce-897"
BASE COUNT          143 a           80 c           92 g          225 t
ORIGIN      
        1 taaacaaggt tttaacttac tctcgctcat ttccttatct ctctttaact tggagagagt
       61 ggtagtaatg gtctcatata tataatcgat tccttgacta gttttttttt gagcatttgg
      121 tctaagtggg ctgctcagtg aaatttgtac attcataaaa tagctgattg aaaagcaata
      181 tttcagataa atacaagcca gcgatctatc agcagttgta ataaaagctg ggcttcaggc
      241 tgtgatttta ttttgaaata ataagaattg ctttattctt tttacttgag ttaccatggt
      301 aattctgtcg tgtagcagtg ttatattgat ttagaaagtg gacagtaata tttcttttgt
      361 gttattctgt ttctaggggt tgatttctaa tttccacttg gagattactt ttataaattt
      421 cttaagtcct tccacttttt tctctagcag tgtaattttc ctctcacaca ttgctatttt
      481 ctgagcttat tggtttgctc ttattttaaa ttaaacttgc tggtttcaaa tattgaaatg
//
LOCUS       KCOD01003022             571 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 336073pyr ultra-conserved element
            locus uce-5500, sequence.
ACCESSION   KCOD01003022
VERSION     KCOD01003022.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 571)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 571)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="336073pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>571
                     /note="ultra-conserved element locus uce-5500"
BASE COUNT          176 a          118 c          112 g          165 t
ORIGIN      
        1 ccttgcaaag tcaagatcac acatgacaac ttttccatgc gttgggtagc tcccattttt
       61 cactgtgtca gttttctaat gtggattcgg ataatgaaga aagtatttcc ttaggggaga
      121 aaactcatca agatgctgag cccaactgca tgtcatgaaa accaaggtct gatgccagct
      181 gaggacagga gtagctggac aggtacagaa accttgctgc ccagcaaggt cccagacaat
      241 ttttactcac ctctagtgta gtcaatacaa tcttctcaac tgaagaaaaa taagcctccc
      301 acaagaactg tgtctgctgt ctaagtgcta ggattttatc ctgatggata gacctgattg
      361 tagaaggaat ctgtaataca agatgtaata cagtcagaag ctttagaaat ctcaaattaa
      421 tatgctgctg acaagccctc tcctctatta gcaggttata cagcttcagc actcctgtcc
      481 aatggagatg tgtgtcaaca gttaaagcct tgatgtaaaa caagtaaaac cctttataac
      541 ctctggtatg aatatatttt tttaattgtt t
//
LOCUS       KCOD01003023             377 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 336182pyr ultra-conserved element
            locus uce-3038, sequence.
ACCESSION   KCOD01003023
VERSION     KCOD01003023.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 377)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 377)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..377
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="336182pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>377
                     /note="ultra-conserved element locus uce-3038"
BASE COUNT          127 a           67 c           61 g          122 t
ORIGIN      
        1 aaaattaagc taatctgctt cgacagaaga gggctctttg gaaccaccta gtgagtctcc
       61 caaatatgaa gcagtaactc aaatgtcaat tacttttcca acagcagaca aattgctagc
      121 acactaatgc aatttaagga caataattag ataacaggac tacagagtgt accaggtgac
      181 agagtttctg agataataga atctagtgtc ctacttctta aatattaaca tcattccatt
      241 tcagtcaatc ggtttatggt aattttaaaa gggcaaagca aattcttttt attgctaata
      301 atattgtgct tctccagcat tagctttgaa ggttagcaat ttacagggtc aaaccttaat
      361 tatattattt ccttttt
//
LOCUS       KCOD01003024             612 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 336290pyr ultra-conserved element
            locus uce-5584, sequence.
ACCESSION   KCOD01003024
VERSION     KCOD01003024.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 612)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 612)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="336290pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>612
                     /note="ultra-conserved element locus uce-5584"
BASE COUNT          184 a          149 c          128 g          151 t
ORIGIN      
        1 agatgatggc acttgaaaag gattccccgg caggcacaac tcgcttgtgc cggccaacaa
       61 tggaggaatc cccctctcca agcacctgta aactgacact gcaaaccagc cattccaaat
      121 gctcatcaac aggccatata tttaagcaca gagcatcgcc taatctattt tttttcctcc
      181 ccttcttcct ttaatagatc ggagcacaaa agcctgagag agggtgacct accaaacaaa
      241 agggcctttg agttcctagg aaaagtagac ttggaggagg atggaaggaa tccaagtggc
      301 cctattattt ccacttgcac taattagaca tttttctgtc agctattgag cactgctgag
      361 aggccaaact cactgaattc atttctaaag tgtttacaga agtttgcatc tgtttgtgtc
      421 tcttcaggag gaaaataagc acttcaatag cattgtggaa aatctaaacg aagcatccta
      481 ttctgaaggg cttggcagtc ttgcagctgc ataatttaac tcccgctcaa tgccgaaacc
      541 tcttgtgtcc ctctccaaac ccaaatggac acaaaacgta gaaaagtcaa gccaggggga
      601 gaaacggggc ta
//
LOCUS       KCOD01003025             731 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 336401pyr ultra-conserved element
            locus uce-7281, sequence.
ACCESSION   KCOD01003025
VERSION     KCOD01003025.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 731)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 731)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..731
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="336401pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>731
                     /note="ultra-conserved element locus uce-7281"
BASE COUNT          248 a          128 c          114 g          241 t
ORIGIN      
        1 ttctggaaat tgatcttttc agtagttcag gttatgtctt aatggacatg actaattcag
       61 cttagtgtta actaaagcta tgtttgattt ttaaatactg tacagtttaa taaataaacc
      121 aaacaaagcc tcaatgtaga acagtcactg ccaatgtcac ccagtatccc tgcagattat
      181 gagaatttaa caaatgtatt ccagtggtct gcagattttt cctctacata cagcatttaa
      241 aaaacatgta ttaaaacaga ccagtttcca gactaaacta atggagaaat tacatttcag
      301 tgcaaaatat tttagactgc atttctttct agtattcctc aggtgaagaa gtggttgcat
      361 attattaaaa atgtaacaaa agcagctaat gctttcataa agagtattat gttagggatc
      421 cccctcacat ctttgccgta ttttgaaaac aaaataacat ttcctatagc cagcaatttt
      481 gtttatttaa atgttacata tactatctca aggcacatct gatgatatat ttataacaca
      541 gtaggtgtca aagtatgttt aacatatgat ttctccagga tccctcccct ttctgtattc
      601 caaaatggag gaactgaaag tgcggtgtca agactggcga tccatattct atctttggca
      661 agcttataca agcactattt taaatgtaat gtaaaagaac tgtaaactag gaacttcagt
      721 ttatgaaaca c
//
LOCUS       KCOD01003026             530 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 336511pyr ultra-conserved element
            locus uce-2814, sequence.
ACCESSION   KCOD01003026
VERSION     KCOD01003026.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 530)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 530)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="336511pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>530
                     /note="ultra-conserved element locus uce-2814"
BASE COUNT          116 a          165 c          154 g           95 t
ORIGIN      
        1 acatccccgg gcaccctgct ccactgcagg agtgacaggc aggacacagg gcaggctggc
       61 agcctcacag cagcactgcc cagccggggg agggggtacc tgggtttgcc ccgaggcact
      121 cctccagcag agctgccccc gcctctcccg gcaggaggct gagccgtgcc gtgtcttcga
      181 aggagaaggc tatcagctcc aaacagccga gacctttagc tcaaatccat taatcctctt
      241 tattaaaccc gggtcacctc tgagtcctgg caaattaacc agcatctccc cactgcaagt
      301 acatcaagag gaaatgcgct gtacagcgcc tgtaattttc atggaccagg gctccggggt
      361 cagagggctt cccgggctcc agtctctgcc tttgtcaatt taaaagggaa catcggcttg
      421 cgcttgtata aattacgaga gaggcagagc agggggccgg gcacccacag ggcaccaggc
      481 cagctccagc cgtgccgctg tctcctgcct ggggacagga gggacagtga
//
LOCUS       KCOD01003027             516 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 336619pyr ultra-conserved element
            locus uce-6902, sequence.
ACCESSION   KCOD01003027
VERSION     KCOD01003027.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 516)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 516)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="336619pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>516
                     /note="ultra-conserved element locus uce-6902"
BASE COUNT          163 a           95 c           95 g          163 t
ORIGIN      
        1 ggtttattca ctttggaaaa aaagggacat ttaaaatcca acacagggca ggtgaggaag
       61 ttttaatagg aatgtacttg agctgctgtt cccccaactg aattttctcc acagctccat
      121 attttgttct ccatgtgtat tagcgttctg agagcctgtc atttcttatc agaatgagaa
      181 aggctaaaga gataatattt caataacata ctggcctgat cataaaataa ctcaatggaa
      241 atgtgtaact gcctcaggca gcacagcagg atagtcagca gtcagatgat ttctattctg
      301 ggtttctttt tttatggtta cattttctgt tatatcagac ataccctcaa gtcttagtta
      361 tgcttttatt caaaaggaaa tctgcagtat aaagacctac aaaacttatt atgatatatt
      421 actgtaaaga aataaaagtt ggtgccacag tagcatattg ataaggacag gcctgccaca
      481 ttaattgacc tttttcatct caaccaccag ggctga
//
LOCUS       KCOD01003028             463 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 336725pyr ultra-conserved element
            locus uce-4555, sequence.
ACCESSION   KCOD01003028
VERSION     KCOD01003028.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 463)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 463)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..463
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="336725pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>463
                     /note="ultra-conserved element locus uce-4555"
BASE COUNT          167 a           71 c           60 g          165 t
ORIGIN      
        1 ttatgtagag tttcaaaatg agatcagtga agtcaaatca acgttccaag tccatttcac
       61 ttttttttct ctttggacat aaaacacttc aaataaaagt tctattaata aagctctaac
      121 cacagattaa atatttctgc tgacattatt tgactgataa tatcaatttc aaagttcaaa
      181 ttttaataag gtattacaaa gcataggaag aaacaagcta atcaagccaa gtttcatatt
      241 tcccctcttt gtataaaatg ataagtgaat ttaaagctat gctttgtctc tttaatatct
      301 gctaaatatg gatgaattac tgaatatata tttattctta gcctcatttg aaggcaaata
      361 tttacaaggc ttttctgttg taatctgatt ttaatatctc aactgaaaat gattcataac
      421 atgtggcttc aaataccctg tagttaaaga ggccaaaaat taa
//
LOCUS       KCOD01003029             613 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 336832pyr ultra-conserved element
            locus uce-3644, sequence.
ACCESSION   KCOD01003029
VERSION     KCOD01003029.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 613)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 613)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..613
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="336832pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>613
                     /note="ultra-conserved element locus uce-3644"
BASE COUNT          212 a          115 c          120 g          166 t
ORIGIN      
        1 tgttctactg atttcaactg acaggagcat tgagctggat gggaagcaag gtaaatgcag
       61 aaggaactat gaatatatta tcatatcttt atttagcaaa ttacagcaat ttgggaattt
      121 tgataggctg aaacctcact tgtagtacaa tattcattga ccctggaata tgtgaagtaa
      181 cctcgagatg cacaagcttc tgtgggcaac aaaatatcaa attcacacaa ggaggcttca
      241 catttaaatt aaaaaaccaa gatatttgga acatacatta gggcaggata tggtcctttg
      301 aatgttattc tcaatgctcg taccagcagc aaccgtcatc tgcaaaaggg ggcaacagag
      361 attctgctga atggaacaga attttgtaca gtactacaca ccatacgaac agatgaatgc
      421 atcattcaaa caagcttatc tagagaacac taatgtggct caactgaaat tcacataaag
      481 aaattgaagg tattgttaca tctcctggct catgaggtac cgagaacaac caaattgaat
      541 cactttggtg ttctgcactg tgttcacaga agtggtctcc tgtcaaacag tctgataaca
      601 aataatcaca gct
//
LOCUS       KCOD01003030             345 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 336936pyr ultra-conserved element
            locus uce-5258, sequence.
ACCESSION   KCOD01003030
VERSION     KCOD01003030.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 345)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 345)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..345
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="336936pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>345
                     /note="ultra-conserved element locus uce-5258"
BASE COUNT          122 a           64 c           61 g           98 t
ORIGIN      
        1 cactgaaaac catcagggtt gaaatttcat ccaagtcttt cgtgacgccc agcaaatatt
       61 cccctcagat tattttacac cttgagggaa ttttggtctt tagttcaaca ctcttgctct
      121 gttcccaaat ggggcgctat ttaggggaat ttaaagagaa agctgagaag aataaacatt
      181 tactgagttc tcttggcatt cagtctctga aaaaccacag tataaactat tcatgctgct
      241 tcttacatct gtcaaatcaa aaattaaaag ccataaaagt gtaacactga aaatatggca
      301 ttagaaagga taaaggtggc caaaaataac aaggaaagta tatta
//
LOCUS       KCOD01003031             735 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 337047pyr ultra-conserved element
            locus uce-6715, sequence.
ACCESSION   KCOD01003031
VERSION     KCOD01003031.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 735)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 735)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..735
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="337047pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>735
                     /note="ultra-conserved element locus uce-6715"
BASE COUNT          252 a          130 c          120 g          233 t
ORIGIN      
        1 agccgtatcc actttgaaga ctaaattagg ttatcatcag actaacatga tctacaaaac
       61 attgttaaaa ggttaaactc tcttagatgg ggttcctgga tatttatatg gaattacaaa
      121 tgcttctgtt agaagattat ccttatactc atagattaag gccactgcat gaacactctt
      181 ttacaaatca atattaatta aaaattatta tgatcagaga actaaacaaa gagcctatgc
      241 tactaaagaa agggtatgcc ccagtgacag atcactgtta aaacctctcc tgccattggg
      301 tgatatttgc catatgtcca atgattgata gtaagattta atgagttctt acaagcaatt
      361 aaataatcaa gggttcctgc tgttacatgg catagcttga tagaacagtg acaaatgaga
      421 gaatatctgc aacctaatca aagggacata tttccttggg aacaaaataa tattatccac
      481 cagtgcaatc aaaggacaaa agaacataga gaggacgcaa cagaatgaga taaattttgt
      541 gctcttttca ttattctggc catacagttt ccatttattg gatcctatta aatcagaaag
      601 aaaattaggc tacttaaata tgtttcattt gtcataaact gttagctagt gggtacatat
      661 ccatatccag tcaccttagg tctcccttcc ccatgaaaca ctatgtttct gtatttttat
      721 ttggtactta tttct
//
LOCUS       KCOD01003032             449 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 337153pyr ultra-conserved element
            locus uce-8010, sequence.
ACCESSION   KCOD01003032
VERSION     KCOD01003032.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 449)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 449)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..449
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="337153pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>449
                     /note="ultra-conserved element locus uce-8010"
BASE COUNT          114 a           90 c          100 g          145 t
ORIGIN      
        1 tttttttttt aaccagtgaa ctcagaagag aaagcttcat taaaccaagt tctaaattgt
       61 tggggaataa caaaaaagac taacgagttt atgttaaatt gtgagaatag aacaaaaggg
      121 aagtgaaggg gtccttattt taaagctggg tttcaaaagt ttgagagagc ctaaagaata
      181 cattctcaga gacagcgttc aacggttgcc tggtcctcga acaggtgatt ggcttggtgg
      241 atcttctgca taaatcttca acaggtgctc accacccgtc tctcgtcgca cagtctgtct
      301 ttggtctggc atctgtctct gatgggccat ttcctaaacc tttatttccg tcttggctga
      361 ggctgtccgc tttgcaatgt tttttgctgt tgctgctgcc ttcttacctg agccagtatt
      421 tcctgaattt ttctctgagc aagctgaag
//
LOCUS       KCOD01003033             739 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 337260pyr ultra-conserved element
            locus uce-5921, sequence.
ACCESSION   KCOD01003033
VERSION     KCOD01003033.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 739)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 739)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..739
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="337260pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>739
                     /note="ultra-conserved element locus uce-5921"
BASE COUNT          169 a          196 c          125 g          249 t
ORIGIN      
        1 tggctgagga gtatgatcct gcaaggaacg gtgccgttga ttctcctctt cacgctgcca
       61 gtcctcgttt tccacctctc cctgttcatt ccagttgtct aatctcccct tcctcagtgt
      121 cttgagtcag ttcccttgtg cagccttttg tgttcactga tcggatgctg tcatctcctc
      181 cactatcccc atctgcaacc caggcgtccc ctctcctccc tccccccttg ctacccctta
      241 ccctgggctg tcggcataat gagggcttga tttcaatact tcccctcatt tctctgttca
      301 ctgctctgca ggttaatgca gattccaaac ttcaacaagc agctgttaaa catgtcatta
      361 acactgcttc ggctgcaaat gaaactctgc tattgggatt attccgggag ctatagtttt
      421 gtgatgagct ttgtcaatca cagctgacct gctgtgtaca gaatgaaact cagattatct
      481 tctttcttcc tcagactctt gtcatttttt cacaaagaat tactattcta ctccccgaaa
      541 gattgattac ttgcacaaat aagagagtct gagacattaa tacaaaattc acaggctttt
      601 ctttatctca aacctgcaac tccctctaca tttcctcctg gtaattatat tagaattgtg
      661 tacactagga attgccatct gattattatg aaactagttt tgtcatgaca aaaatgagct
      721 taagtcttgt ttttttgga
//
LOCUS       KCOD01003034             589 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 337371pyr ultra-conserved element
            locus uce-2094, sequence.
ACCESSION   KCOD01003034
VERSION     KCOD01003034.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 589)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 589)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..589
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="337371pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>589
                     /note="ultra-conserved element locus uce-2094"
BASE COUNT          196 a           92 c          110 g          191 t
ORIGIN      
        1 tgtctaaaaa catctaaata atgatatttc ttctcactta aaggggtatt actcatatga
       61 ccagctgcaa gatgagagtt ctaaatttat ctgaaccttg agatgggaga actgaaaact
      121 ttatgggaac ttttgattag ggtttgggta ggtggataat gaaagagtgt aacattgaaa
      181 tgtgcctaaa taacatgctg ttacaagcct tatgatagat ttgtgtttga cttaacagct
      241 tttggaacct aataaaaaga acttaattga caatttcttg aaattgctaa gaaaacctag
      301 tgatgttggt agggtataat aaggagtttt ctcatcactg tcttcaagat tgagcctata
      361 caaaggattt atctctgtgg taactctaag taattgatat acagacaagg tttggttcca
      421 atttgccagc aataaacttg taatagggtt ttctctgcaa ttttagcctt aatgtgctca
      481 ttccaaagag cggtattttt ccaagcgaac aaataacatc agtaaagctt acgatcagta
      541 atagccccac actgatgctc acattaaact tgttaaatca attcactag
//
LOCUS       KCOD01003035             453 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 337477pyr ultra-conserved element
            locus uce-4463, sequence.
ACCESSION   KCOD01003035
VERSION     KCOD01003035.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 453)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 453)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..453
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="337477pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>453
                     /note="ultra-conserved element locus uce-4463"
BASE COUNT          151 a           85 c           70 g          147 t
ORIGIN      
        1 tggaatttac catgaaaatc tgaaagctag gcttgattta caatctggtc agcaagctga
       61 aatttcaaat gaatggatat gtacatattt aatccaagcg cactgaatcc agttcagcta
      121 ttttcttttt cactagactt ccacatgtta ttagaagtac acagctaacc aggtttcatg
      181 cagtagacaa aatagcattg tgggattaca ttagtccgac agctgcttta tgactatagc
      241 ttccagacca atttatttaa tattgatctt taaacaaaca tcagtacaaa taaatttgag
      301 cactctagtc ctgagatttt gtatctataa aagaggccaa tattcagaga agcagttctg
      361 cctgtatttc actctttgat tctgttttct ttgatcctac caggtatcaa atacatcaat
      421 gccaaattaa aacaaatcta tcctgagata aag
//
LOCUS       KCOD01003036             485 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 337582pyr ultra-conserved element
            locus uce-7426, sequence.
ACCESSION   KCOD01003036
VERSION     KCOD01003036.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 485)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 485)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..485
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="337582pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>485
                     /note="ultra-conserved element locus uce-7426"
BASE COUNT          146 a           96 c           79 g          164 t
ORIGIN      
        1 atgtatgcaa agcagaagca taaatctgtc ctaatcataa gaaataataa tacagtcttg
       61 acagagttaa agtagaagca aacaccttat atgtgtgtta cagtaatccc atgtttatgc
      121 atgaggtaac aaacacactt aggtaacagc tttttcctct tgggcaatgc cttatagtcc
      181 ttctccatca gtaaaagcca agaaaccagc tctaagctca tttaagtgga ttttgttctt
      241 ggtgatccat gaaatgctct gtctttttat ctgctcttta tacttttaat gtattcccca
      301 tagaacggaa gtgtactttt cctgcagtta aagactaagg ttataaataa catcagtatg
      361 gggtagtgtg cttgcagctc acattttgct caatgatttt ccataaaacc cattgattgt
      421 tgttaaatac aaaaagctcc ataggatcct ctcacttcta tggtctcccc tactgttttt
      481 tctta
//
LOCUS       KCOD01003037             667 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 337692pyr ultra-conserved element
            locus uce-3231, sequence.
ACCESSION   KCOD01003037
VERSION     KCOD01003037.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 667)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 667)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="337692pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>667
                     /note="ultra-conserved element locus uce-3231"
BASE COUNT          173 a          164 c          141 g          189 t
ORIGIN      
        1 agcacactga atggaatttc aagcaaattc ccatcaaatg gcagtgtgcg tcaggtgtaa
       61 aaccccgtaa ctcgtccttc tctgatggcg ccaaggtgct tccagcccaa cagcagttcg
      121 gtgccatccc ttcccagatc cctagggctc ttaattagca atgcaatgct aggtaggtga
      181 tgcagagagg aactgtttta ttgatgccgg tagtctgggc taaagcacag ctcctgctgc
      241 atttcttcca gcagcgcgag ctgaatcttt tccctcattt gatacagtga cctctcaagt
      301 gcatcattgc cctgagggct gagggcagtc cagcaactgt taaacccctt gggttgataa
      361 tcttctccca catttgccct taacaccaga cataccacca ttagctacag ctccactggt
      421 gctcattaga gccgatcaat atagactaac ataaagaatg ctgctgcgcc ttctgttatt
      481 tttcagttac tgcaaattta cagacttttc acctacaata cgaggctttg ctgctgtact
      541 atgtggggat ttgagacaaa aaaccccagc agtttttatt agatgcctaa gcgttattta
      601 tcaaaatatc tcgttactag agagcggacg ggagatgttc tggacaaaat tctctttgga
      661 ttaagtt
//
LOCUS       KCOD01003038             799 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 337802pyr ultra-conserved element
            locus uce-4650, sequence.
ACCESSION   KCOD01003038
VERSION     KCOD01003038.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 799)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 799)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..799
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="337802pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>799
                     /note="ultra-conserved element locus uce-4650"
BASE COUNT          248 a          153 c          122 g          276 t
ORIGIN      
        1 agcccatgat attacacaaa taaataacac ttagcattat cttcagcact atcatattta
       61 ttaaacagtg actgagggca gcagtaacca tttttattgt cccatatagc tcttattttc
      121 taattaaaca gaaggttatt tccactgcca atgcagccat ttatcttatt tgagtgttac
      181 ataatatttt ttgccagcca agcttgacta taaagtattc tgtgtggtga actgtggccc
      241 aacttgcttt cctgtttggt aatcatagaa atgggccatt tcgtgctgtg ttaataaata
      301 aactttttgc aatttctcct aaaacatgat aaagcttata ctttgtccta ccctctagct
      361 tcaatacaag ggcaatgagc tgtattatta aagatatagg tcaagcaaac ctgatgattt
      421 caatcctgtg gggtgcttta gaaactattg tcatattact gagatcattc tgctgttcct
      481 aattattcct cttggttgcc tcacatttca agtgatttct ctcacactta tgtcaaaatt
      541 tataagctac tccctgtaac aacactacat tatttcctca cttgttaggg taatatagga
      601 cagaaactag gagaatgctt taatctagct gacaaggata atgtagtcta gaaatgtaat
      661 aaactttgca ttctactaca aagttgtggc tccctaccag gaaacatttc atatagatag
      721 acatcttaga aaaactaatt gctacaataa cttgcatatc ctcttatctg agttgctttt
      781 atcagaaaaa tgtatcagc
//
LOCUS       KCOD01003039             704 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 337911pyr ultra-conserved element
            locus uce-5261, sequence.
ACCESSION   KCOD01003039
VERSION     KCOD01003039.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 704)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 704)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..704
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="337911pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>704
                     /note="ultra-conserved element locus uce-5261"
BASE COUNT          222 a          128 c          138 g          216 t
ORIGIN      
        1 aaataaagga caattgaggt gggtaaatta aaggagacct tgcaagctac aacataccaa
       61 aacaatcctc ttcaaactgt actgcctttc ggggagggtg aggggcctga taagtttatt
      121 tacactttta aaaagcactg ccaatcccaa tttatcagtt actgtattgt gacaatttat
      181 tcattgttca ctgttagaag ctagaagtta cataggaagc atgattgctg atagcttctc
      241 tatttcaata tggtataata gagataacag agtgcccaaa agctctacag ccgccttttt
      301 gtctgctttg tctcttttca ttactctatc agaatcttca tttaatataa tccaaaaaag
      361 caaggtaatt gcttcactta tcagttatca tcgcactcgc atacttatca tgtcaaaatt
      421 atttatgtgg atgcccaggt tgatcttgct gcatttagaa gcttaaaatt tgaataactg
      481 ttctgccagt taggttatca aaattgcagc ataagcaatg agtttcttca ttctatacct
      541 tcgagggaga gtaggaagca tctcattgca ggactggttt acccgtggct gaacactgct
      601 ccagggagac ttacagcaat tcttgagtgc tggggacagg cttcatttgc tagatgaaca
      661 gtaaataaaa atggcatgat ataaatagag acaatagaga gaga
//
LOCUS       KCOD01003040             358 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 338018pyr ultra-conserved element
            locus uce-5204, sequence.
ACCESSION   KCOD01003040
VERSION     KCOD01003040.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 358)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 358)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..358
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="338018pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>358
                     /note="ultra-conserved element locus uce-5204"
BASE COUNT          109 a           67 c           59 g          123 t
ORIGIN      
        1 cagaaggaat atttctttct tttattaata taaaaccaca atgtcattat gtcacccatg
       61 catccactgt gtaattactc cattttaaag ataaatccat tgtcttagga tgcatccatc
      121 atggatgtca cctttagcac agaaggtgag acactaaatg gacacctttt actaatatta
      181 atttctatat agtcatcaat tgcgaataga ctatccattg ttctctttga cagagacagg
      241 ccaatgacaa agattaaatt atccattttt gtggaagcga gggatctgct tcgaagagtg
      301 ctctgcgaga tcttgctttt ctggcctgag tatattatat taatctacag tttgttca
//
LOCUS       KCOD01003041             667 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 338125pyr ultra-conserved element
            locus uce-3257, sequence.
ACCESSION   KCOD01003041
VERSION     KCOD01003041.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 667)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 667)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="338125pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>667
                     /note="ultra-conserved element locus uce-3257"
BASE COUNT          225 a          123 c          119 g          200 t
ORIGIN      
        1 tgcacatggc aggatttcac tcagcagctt gagaaggtca atcaagtatt aaatagcacc
       61 caggataata catgccatgt aacatatcat gagctgtgca caagggcata tctaaataaa
      121 atgcatagga aatagcatca cacaaatatg atctacattt tttcttgatc aaagaggctg
      181 agggaaaaaa taattaaaaa gtaaaagcct tatgcaatga gatttaaaag aaaactttgg
      241 aggctgacaa gacgcatctg gcacaacttc aaagtccatc aaagtacata taatcaatgt
      301 ttgtcaatag cagttttgca tcctttaatt tatctttcat ggatataaag catgatgtta
      361 ttaggatcca gtccatacct taattctgtt tgagatttga tgaatcaggg ctctattaaa
      421 attcagtgca aatcagctta ctcaaggaca cattacataa agtcgcgtgt tatctaactc
      481 cttttatctt gctgtctttc taactagtta aagaatctgg aatttcataa acttgtattt
      541 gtggctggcc accaacatac tgcttatagg cacccgcttg cacatgtggc atagtcagga
      601 taccaaaatc ctttgtgcat tttcaagtct cctttaggac tgttgtaagg aatcatcaga
      661 aacaagg
//
LOCUS       KCOD01003042             695 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 338236pyr ultra-conserved element
            locus uce-2809, sequence.
ACCESSION   KCOD01003042
VERSION     KCOD01003042.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 695)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 695)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..695
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="338236pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>695
                     /note="ultra-conserved element locus uce-2809"
BASE COUNT          218 a          158 c          165 g          154 t
ORIGIN      
        1 aggcagtgac agcaaagtgt gaaacccagg catgagcagg ggagaaagcc cagagagcag
       61 ttcaaaggca atcgggtgct ttccttaatt tcaattaaat cctaactgcc ccttcacatc
      121 aactaatcac cgaggggctg attcagctcg ttctgcaaaa caggacatgt atcaatagcc
      181 agagccaaac actccttcct ggaaatctgc agtgcacaat agtaaataca gagaaccggg
      241 actattcatg tattaacaat gcagcggcag cagcccttta ttgtcacacg cattgttaaa
      301 cccacaaaga gcaactggta ggttaaatct attttagctg ggaaagcttg acaaaaatcc
      361 ttgccaccaa gcatttgata ctgatcacag tgtcacatca gggaacagca acctcaaaag
      421 aacaagtcat ttttttttat ttctgaactt tagaggcaac ggcctctcct cttcgctggc
      481 tccccaggtc ttagtcctct tagtaggagg tgggccatgc cactcaatga gagaaaattc
      541 acaggggtgg ggaggggagg gtaaaaaaag caggaaacat acaatgctat attgaggcaa
      601 cacaggtgga tgtgaacaca agcttctttc tcaagggaaa tcaaatccag acctcgggat
      661 ggcagcaaag ggtgtggctt gcgaggcagc aggac
//
LOCUS       KCOD01003043             776 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 338344pyr ultra-conserved element
            locus uce-1971, sequence.
ACCESSION   KCOD01003043
VERSION     KCOD01003043.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 776)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 776)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..776
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="338344pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>776
                     /note="ultra-conserved element locus uce-1971"
BASE COUNT          224 a          152 c          132 g          268 t
ORIGIN      
        1 tctgcatttc attagtgagc tttacttatt catttcatgg aaaatatagc ctatttctct
       61 gtcatctccc tttaaagata tgctccatat aatgtttatc tttgatcaga cttattcagg
      121 agatagtagc agcttttgtt ttcaaaaagt gaccagagaa ttggaagtgt gtagttaaga
      181 cacctcatac agctctgttt ttctgtactt ctctcattct ctgccaactg gtacctcagt
      241 cttattggta tccaataata agcccgatta cagctagccc taggagacat gacaaaaaga
      301 gagtcctcat cttgcattaa ttgctcgtat tgaaactatg ccacatctct cgaagctaga
      361 tgttgcttag tatccctttg atatgataat gacatgcttc ttagcagatg aatatgcaaa
      421 ttaaaagcag taatttggtg gcatgcacct gctgacactg cactactatg cttatgtgct
      481 cctctgtaac actgcagcta cacaaaagca tcacagaggt aaaattaaat tctaatgtcg
      541 tatatattaa acagatgctt ccacttttct ttgtatatct actttttaca gaatttgcta
      601 ttggaatctc agctctccct tcatgcaatt agtggacatt tatgtgtcat acacagaaat
      661 gtacttggag ctatttaagg gctctgtttt taaagaaatg gtttacatga actgcactct
      721 caaagagatt ttttttcctt catagcagag aggcagagga ttttaatctt gatgca
//
LOCUS       KCOD01003044             484 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 338454pyr ultra-conserved element
            locus uce-7459, sequence.
ACCESSION   KCOD01003044
VERSION     KCOD01003044.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 484)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 484)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..484
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="338454pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>484
                     /note="ultra-conserved element locus uce-7459"
BASE COUNT          133 a           84 c          133 g          134 t
ORIGIN      
        1 gagagcccat ctaggctcta cccattttaa ttgtctcagt ctctgtgaaa aagatgatat
       61 ggggggcttt caggcaaacc caagggtgtt ccctttgcat atgcagtttg tcagctgggt
      121 tggtgtttga ggatttttgg ggtggtattt cagagtctgc catgtctccc ctgcccagtg
      181 gcaatgatga atgccaaaca ggagagaaat taatgctggg gattttggtc aatgtcagcc
      241 ctttcttcac tgtgtcaagt taaacaaaca agatcaaggc aaaggaaatg gtaattgtct
      301 ctctggagat gagctgggga taagagcagc attgttgaat ctaaatgcag aaaattttca
      361 caggttgtgt ccagcattag gaaaaaggag tatttatttg cctaaaatga ggagctgcag
      421 tgaaaagcca aacccctttg ggagttgatg ctgaaaatgg gagaggaggc tctggctgct
      481 ggaa
//
LOCUS       KCOD01003045             580 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 338562pyr ultra-conserved element
            locus uce-5063, sequence.
ACCESSION   KCOD01003045
VERSION     KCOD01003045.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 580)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 580)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..580
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="338562pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>580
                     /note="ultra-conserved element locus uce-5063"
BASE COUNT          121 a          130 c          101 g          228 t
ORIGIN      
        1 ttttctgctt tctctgtact cagcatcctt cttggctatg aatgaatata taattttggg
       61 ggtaaaagag tgcagtcttg tttcatgaat ctttattctc tgctattctt tataaatctt
      121 tattctgccc taccttcact tccttttctt ttcctcctgt cttttttttt gtctttatct
      181 ttcttttctt ctgctgccct cccagctttt cattactgtc atcttttttc ccagccactg
      241 aacccttgat gttgttctaa ttgacagacg gggtttaaaa gcacattcga aagcgcctgt
      301 ctttttaaat agactcctgt ctcatcaaaa gatgtacagc aacattccat tagagcacat
      361 catttgaaaa tagattgggc ttttagcaac tgcactcata tttttatagt taggctgttc
      421 tgctgggatc gtcccttccg ttgccagccc ccaccatctc ctcttaggga gggaaagggg
      481 aaaagataca ttaaagagag attaatgaat tttgtttggg ttttctcctc tctgcagctc
      541 ttgggtgctt gttctgcgtg tttatttctc atggccatgg
//
LOCUS       KCOD01003046             494 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 338670pyr ultra-conserved element
            locus uce-263, sequence.
ACCESSION   KCOD01003046
VERSION     KCOD01003046.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 494)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 494)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..494
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="338670pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>494
                     /note="ultra-conserved element locus uce-263"
BASE COUNT          180 a           93 c           78 g          143 t
ORIGIN      
        1 tttggaagca ctgattgaat aataaggcga gcagctcagt gtatcacatc tctattaaat
       61 tctcttgccc ttcctctaaa tgcaaatctt tctgtgtaac actgtgccta atctactaca
      121 actaattaat ctgtttgagc tgatgaaatg ttacctctgc attttttgtt ccttgtatac
      181 aattattgta acagtggtga ataaatcaat attcccaatc caactgtaaa aaacaatcaa
      241 gaaaagcagt gcttctcagg gaagaaacac caaataatat ttattaactc tgtctcaatc
      301 cacagcagag cctaatacca ttcaagcatt ttctgcaagt gtaataagca aactcaaata
      361 catgatgaaa gtggcacatg ccaataattt caccatttta cactgcagag taattgaagg
      421 atttaatgag aaacaaacca ataaaaataa atagaccgtg cgagaggagg agaaactgat
      481 ctaaaatgga agtt
//
LOCUS       KCOD01003047             549 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 338779pyr ultra-conserved element
            locus uce-5231, sequence.
ACCESSION   KCOD01003047
VERSION     KCOD01003047.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 549)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 549)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..549
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="338779pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>549
                     /note="ultra-conserved element locus uce-5231"
BASE COUNT          129 a          123 c          149 g          148 t
ORIGIN      
        1 taaacgggga agaaagcaga gcctttgcat tattctgtgc tccgtccgga gcgcaaatgc
       61 tctattttta cacaccttcc catctcccct gagccccgtc ccctcctcct ccgcccgcgc
      121 aggcaaagtt cttgaatcag cagattctga gcttgggagc ggtaaagagc tattgaggga
      181 cggactctga tagcattaca accatccatg gagccatttt ctgtggcgaa tcgctgagtt
      241 ctacctggtt atctcctgcc ttgcacatca cttccgaatg acatgctctc agtctgggca
      301 aaaaatgaga gttttttttt aagagctggg atttcaataa tatgtgacga aaggatgaga
      361 ttactttctg aggtgggaga aggcgaggag agagggagaa gagatgaaga gcaagttctt
      421 ggtcctttat ggagtttcac agcaaggctt ctctcttggt ggtaagctct tctttggatg
      481 gggctgggag aagccctcca agaggtaggg gttcgttcta tgccttgaga ttgtctggct
      541 gcaaagggc
//
LOCUS       KCOD01003048             457 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 338882pyr ultra-conserved element
            locus uce-6339, sequence.
ACCESSION   KCOD01003048
VERSION     KCOD01003048.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 457)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 457)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="338882pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>457
                     /note="ultra-conserved element locus uce-6339"
BASE COUNT          138 a           87 c           75 g          157 t
ORIGIN      
        1 aaaaaatctc aaagaaaacc cagttagttt gttaaaattc taaataactc ctgtaagaaa
       61 tttatatagg aaaccagtta ttatttctct aaaaacatta cctgcatctc aaatgagtgc
      121 ttcttaattt cagtttgatg aatgactttt gtttcccctc ctagtaatct gactttcttg
      181 atccgtgttc ctaaagatca gttgtgcagg acatacaggt gttagcacag ctggcttgct
      241 gatgacaact ctgtccatat agctgtctag tgtgtcatca ctcatattgt tcagtgtcat
      301 tctgacctag ccaagctaaa aatggtactc cagctcaaga gggatttaaa aaccttcaca
      361 aagtaaagag acattgccga atgtcatatc catgtgtttt tcagtttcga caaaaataac
      421 taatttggat gcatttgtct ttgtcttttg gatttct
//
LOCUS       KCOD01003049             620 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 338991pyr ultra-conserved element
            locus uce-2800, sequence.
ACCESSION   KCOD01003049
VERSION     KCOD01003049.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 620)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 620)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..620
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="338991pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>620
                     /note="ultra-conserved element locus uce-2800"
BASE COUNT          166 a          112 c          124 g          218 t
ORIGIN      
        1 accctccttt ccagctctct cctcttcctt tgcagcacta atgtccatta atatccagaa
       61 agtgtcggtt gtatccaaag tttcaaatca atgaaaaata tattggattt aatatgtttg
      121 gcttaggaaa tttgttttgt gtgctgcagc ctagtgcagc ttgctctgag cttacctctg
      181 tttgaattag agggtttcgg ctcatgtgca gctcagacat tggcccacaa gaccgtgaag
      241 cgtagctgat ttttggagaa actactaagt agtttctata gtgataatga tgtactatgt
      301 gcacctattg ggaatatata aaattagaga gaatttctgt ttgctttggt cctctttcta
      361 gaataattac aggaactgcc attcattccc attctgttac cctgattatt ctagaataac
      421 ctggttatta aggtttaggc gtgtttaaga acatactgca aagtgacaac ttgtcatgtt
      481 ggtattatca atactttaca atttccatat tagtgaccca attttctcaa gattcctgag
      541 tgtctaattt ggtggggaga aggagggagg ggagtaaatg atgcctctgc ctttttgcta
      601 ttcaaagtaa ccttaatttt
//
LOCUS       KCOD01003050             610 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 339100pyr ultra-conserved element
            locus uce-5846, sequence.
ACCESSION   KCOD01003050
VERSION     KCOD01003050.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 610)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 610)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..610
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="339100pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>610
                     /note="ultra-conserved element locus uce-5846"
BASE COUNT          176 a          126 c          146 g          162 t
ORIGIN      
        1 aaaggaagaa aggggaagaa agggaacctg gttaattagg gtacagttgc tgctttattg
       61 cagcattact gctaagtgca ctgagatgcc ttcccatagg caggtgccgg tggttgtaca
      121 gctcatttag cctgggtgag taatgtcaga tcaggaggag agaaaggctt gtgtcttcaa
      181 actttcaatc tgcctccatt atctgtgatc aaggtggaac cacaggggag tggaattact
      241 ggcaggtcta ggacaagtga agagacagtg aatctataag acatattaat catctttccc
      301 ttctcttggc tggcgccagc ctgtgcctcc gactccccgg cgccaggcaa atggattctc
      361 tgtccccaca ggtacaagcg agtgcctttc aggggcaagt catcagaata ataattactg
      421 acactgctga gatcagccct aaccagtcca aaagatagga gagaaacaca tttcctgaac
      481 tttcacgccg gtgggcatta agatttcaat tacattaagg actttcaaat tatataattc
      541 tgaatctagg tttctcagta tatcaccaag atactgtaaa acataattta gatctgtttc
      601 tgaggtgtga
//
LOCUS       KCOD01003051             493 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 339209pyr ultra-conserved element
            locus uce-1907, sequence.
ACCESSION   KCOD01003051
VERSION     KCOD01003051.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 493)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 493)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..493
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="339209pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>493
                     /note="ultra-conserved element locus uce-1907"
BASE COUNT          145 a           95 c          104 g          149 t
ORIGIN      
        1 catttaaagg ataaaaagga ttcatattac aataaaaatc atctccgtgc tcaccactac
       61 aaacttcccc agcccagact cagctgtggc caacaatcca agaggagtca ttactgtaac
      121 taaattagac cgtttgtttt ctttccctca aatcgaattg tggaggagct gctttattgc
      181 aaaacagaca ttaaaattcc agctagacct ccgagagaaa gtaatttcta ttttatcagc
      241 actgtaaagc tgtctttatg ttctgaagca ggaaatattg cagggatatt tatagctcca
      301 gcaccaaagc cagtttgaat agaaatgtta ctgcggtcgg cagagctgtc acattgctca
      361 gtggagcagg gaattttagt gaatttgtga attacccttt cagtcttgac aagtctttca
      421 gggtgtgtgt ctggagctgc tttgtgcttt cgggataatg attaaagact tggatcgctt
      481 taggaggaga ttt
//
LOCUS       KCOD01003052             948 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 339318pyr ultra-conserved element
            locus uce-1412, sequence.
ACCESSION   KCOD01003052
VERSION     KCOD01003052.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 948)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 948)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..948
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="339318pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>948
                     /note="ultra-conserved element locus uce-1412"
BASE COUNT          310 a          175 c          179 g          284 t
ORIGIN      
        1 aaaagatttg atgcagaccc tgggcaaaaa agcaaagcaa acaatgagcc aatgtttgtg
       61 ctgtaacgtg ctatttgact tgtgttactc cccagtgtag agggactccc ttgctgggga
      121 aaatatagca aagaggaaag acagctttac tgacctgtgt gctgccgccg atgcttggtg
      181 agggcatgac gtgtcccgcc ggcaaagcca caaaggtcac agaggaacga cttctcgcct
      241 gttgcaacaa taaacagatg agggactgcg gaggtcacag atcattaaaa catatctatc
      301 aaggctttca gggttactaa ttcctccaat caaatgtttc catgtaaata tgtcaaatgg
      361 gaatgaaatt accactgcgg tttattgact gtgataaaat ctgaaaagca ccactgaaca
      421 taattacata cttgtcagac ccataaaaat tagctttatt atcaatggaa tggttttgta
      481 caacttcatt tctgttagat gtcttccaga tggggctgct ttatgcactt gaacagtttt
      541 tatgcatatc ctgatttttt acaattccca tacatctggc ctttctgtgc tgagtaaaga
      601 ttgcctggaa aaaaaagtta atatactgta tatatgattc tgcttaaata aaacatattt
      661 aatttattaa caaattaaag gtactgagaa attttcaaca gacaagaaaa cagtcatctt
      721 tagttatctt ctatttatta ataagtatta aattattttc ttgaacacaa gaagagtgca
      781 ggcaacaata aaagccaaat tattcagtac cagtggcaat tcagcactgt ttatgtttct
      841 gaagttttca tgacataaag aaaacaggtc tggggattgc tcctgaaatt gcagcagaac
      901 tcacattgtt cgtcttcaaa tgataattct tcattccaaa cctctgga
//
LOCUS       KCOD01003053             604 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 339427pyr ultra-conserved element
            locus uce-381, sequence.
ACCESSION   KCOD01003053
VERSION     KCOD01003053.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 604)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 604)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..604
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="339427pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>604
                     /note="ultra-conserved element locus uce-381"
BASE COUNT          152 a          124 c          132 g          196 t
ORIGIN      
        1 gctgttggac accttggctg tgtcacagca atctttgttc attgatctat ttggagtgaa
       61 caggatgtta atgatggctt atcctttgtg gtgtaacaag taccttttac taatccaacg
      121 ctgtaaaaat tccccctttt cccccccagc ccctaaaaca atcccaggca gcgagagcag
      181 tgtgttgctt gggctaaggc tgggctgtta gctaaattaa gccattgtga ctcaaaatcc
      241 tcctttaata aggttcatgc tgtctacaac ttcatcattt tctgctgaat gataattact
      301 ttattcaatc atgttcaagg ttttagtgaa agctagcatt gattgattaa cttcaattac
      361 catgcttaca tttgcataga taaaaactgc ttttcaattt gtgagtggca cgctggtgga
      421 aacccggcgc tggtatttgc atttcaatgt ggatagtgaa gaataaaggt gggagagagg
      481 tctgatcagt gctaagccct ttctgcttca gtgctcgagc atttttccat aaacactcct
      541 gttatgatgt tggtttgctc gtgccactcc gagggaagcg gtgtttacaa ggctctgtga
      601 caat
//
LOCUS       KCOD01003054             444 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 339532pyr ultra-conserved element
            locus uce-7, sequence.
ACCESSION   KCOD01003054
VERSION     KCOD01003054.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 444)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 444)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="339532pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>444
                     /note="ultra-conserved element locus uce-7"
BASE COUNT          143 a           76 c           75 g          150 t
ORIGIN      
        1 tccaacccaa catggtagac ctaaggacgg aaacacaccc agtgcaaaca aagttaaaaa
       61 gctatttttt cagtatatat gtttcttagc aacaacttcc gtataacatg aaaaagtgaa
      121 aaactagaaa ctaatttttt tttttttctg tttaaattta aatggtatgt gtacttgctt
      181 cacattgtct ttctaagttg gcgttcacga ttcaagtatt tcaagagtga tatgttctct
      241 ttttggattc atattccaaa cgaaaaaact gaagttatat aagggaggca actatgtgct
      301 cagacagtct gtcaatgacc cacctctttc tccgttttct tttttccttt tataaatgta
      361 tttattgcaa gttgaaaaaa acgaaaaggt caagttagtg ctgctgctgt tccaaaaaag
      421 gtcacgaggt cagagttgaa agtt
//
LOCUS       KCOD01003055             690 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 339641pyr ultra-conserved element
            locus uce-5167, sequence.
ACCESSION   KCOD01003055
VERSION     KCOD01003055.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 690)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 690)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..690
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="339641pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>690
                     /note="ultra-conserved element locus uce-5167"
BASE COUNT          178 a          179 c          144 g          189 t
ORIGIN      
        1 tttgactttc tagagggcat aaaatataac cttccatggc cgcacactcc cattgttctg
       61 ttccccgcgt tctcctcggc tccttgcctg cagatgtcga gatccttgct ctgcatccat
      121 gtcaagttca agtacgggaa gtttagctcc acctccaagt cacttgtcag taaaaggttg
      181 ggcgatttat tgaccagtgc aggatgccta ctgtcagtgc tgaaggaaat atgagagggg
      241 gctgtcgcta ctgttctgga gctcattgat aatgacatac ctgcctctgt cacccattac
      301 ccatactaca aactacttag acctaactga aaaatcaata gcctacttgc accggttcct
      361 gtggctgcct cctttgattg tcagctcctg tctagggtca gcacttacat gaaaggggct
      421 gtgactgcct gatgctttca ggacaaccta acgatatgaa actagccaac agaacagtaa
      481 attctgtccc cctgccctcc tcatcaatta ggctttgact aggcttgcct gtagaaacct
      541 gaccttttaa gtttaggtga atatggaact agctgaacac gccattgccc tcagcactga
      601 gccaggaaat ccactgacag gttaaacaaa acagaaggtt gtaactgtca taatttgcat
      661 tgcactttca cgccaacaag ggtgttatca
//
LOCUS       KCOD01003056             656 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 339752pyr ultra-conserved element
            locus uce-5701, sequence.
ACCESSION   KCOD01003056
VERSION     KCOD01003056.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 656)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 656)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..656
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="339752pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>656
                     /note="ultra-conserved element locus uce-5701"
BASE COUNT          197 a          187 c          152 g          120 t
ORIGIN      
        1 agctcggctc atcccaaagg ggagcagcgt gctgctggga gcggaaaccc aaaagccaca
       61 gagactgtgc atccagaggt gtttcctagt gttttcgatt ccttattccc ctttaaagga
      121 agagatggta ttggaaaagc cccttccgtg tcccctgtca tgccccgctc ccggccaccc
      181 tccacagcac ccacaccatc ctttcggaca tggatcaccc ttacctattg agctgaggag
      241 aagcttgtct cgacaacact gcccagatag ctgagattaa tcaaaaacaa agcagttatc
      301 aacacccgca aggagccgag ctccgcaaca catcagcacg tcaacaactc caaaaaggag
      361 ggaaagaaac caaactgaaa caaaacgagg ctggagaaga aagggggaaa gaaacagaag
      421 agaaaggaag aagaaacgaa aacgataatc aacaaagcga atggatacac tgcataaaag
      481 cacggacaac agtgcgctct aacacggctc tgtcctggag ctggctctcc gctaggagac
      541 gtggacctgt gactacatcc ctaactgcat cgctccgtag ctgggttttc cagaggcaca
      601 cagaagtcat ttcaggcttg ttcagctgct cttccccatc ctctccccct gagccc
//
LOCUS       KCOD01003057             584 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 339862pyr ultra-conserved element
            locus uce-6424, sequence.
ACCESSION   KCOD01003057
VERSION     KCOD01003057.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 584)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="339862pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>584
                     /note="ultra-conserved element locus uce-6424"
BASE COUNT          186 a          114 c           89 g          195 t
ORIGIN      
        1 aaaaaaaggt gtaatatgga gaacgacaca atgcttctta aaacacagtg atacccaggg
       61 actctcactc tctctttaat gatccactgc tctcattcag ctgtctttct tttttcaaat
      121 ctttacatat gtgacagctc tcaaaagtag accatagacc atctggcatt ttccgaggtg
      181 taacttgtgc aaattcagct ctactgggaa cacaatgcta tcttctgcct gcgttataaa
      241 agatacaata gaatgtagaa cttatgagtt gttttgaatt attcattttt tgcctgtata
      301 ttcaagaaat tttacaaact ctgcattttg tactacataa tcacatgcgt taaaggtaca
      361 aagaaacttt ttgacacctc ttttctacag aaagatggca ttttgtttga tatgtgaaca
      421 ttcagcgcct gttatatcat tctaaacagg ccatgtgctg ctacaaaaga tcccatttta
      481 cactctatgt atgagcaaaa atgttattct tgatattcac taactaatgc aatgcacatc
      541 aaaatttcaa atgtgtgttg gatgaacatt cagcatcatc aaat
//
LOCUS       KCOD01003058             544 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 339973pyr ultra-conserved element
            locus uce-532, sequence.
ACCESSION   KCOD01003058
VERSION     KCOD01003058.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 544)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 544)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..544
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="339973pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>544
                     /note="ultra-conserved element locus uce-532"
BASE COUNT          187 a           93 c           85 g          179 t
ORIGIN      
        1 tatttgttct ggttgtgtgg gagaggccag ttctagctgt agttacactt taacattact
       61 gtaaagcagt atcatgctgc catgcaatag ctctttaata tcaaccataa ccttcataaa
      121 tgggtttgta acgagaaacc cttgtttgtc attcagtagg tatgattgat gctatgtgag
      181 tgaagtgtag ccacagtgac catctcaata acatgaacag ctgccaaata ttcatttagc
      241 agaatgagtt taaaaaactt tgagcagatt gctttcacaa ggctgctttc aacaaaagga
      301 aacataatta acgagctaat atcagcatgt gtctggctaa gctaatgaat atcaaattac
      361 acagaatcct gtataaatca tcattatcct gaattttaat tgaacttgca attaaacatg
      421 acaaatttta tatacactaa acctttaatt tatactttca aataagaaat aatttatcat
      481 ttttagtatt tcatagttaa tttcccaata tgtacacttc taattaacaa ggacagacag
      541 gcct
//
LOCUS       KCOD01003059             537 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 340079pyr ultra-conserved element
            locus uce-157, sequence.
ACCESSION   KCOD01003059
VERSION     KCOD01003059.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 537)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="340079pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>537
                     /note="ultra-conserved element locus uce-157"
BASE COUNT          131 a          177 c          123 g          106 t
ORIGIN      
        1 ctattcaaac acaaaacccc agcagataac agttatgtta cgttctcacc cgtaaatgcg
       61 cctctgccta gagcaggaag aaaagccacc aggaatttcc aaacacattt tctggccaaa
      121 ccctgtgcac ttcccgggat acattctata ggtgcctcat gggcggcgga atggggccgc
      181 tcccgatgcc acccggggct ggaacaaaca gccggacccg aacagctcaa gatggcgatg
      241 gcagcagcag ccagtaataa ggaaggttat tcaatcccat tagcctttta gcccaaagaa
      301 cccctcctcc tcccactcat tcaggctctc acttaccctt cctcttggcc tcttcactga
      361 agacattttg gcgtcagaca aagacttgcc ctccgctttt ccagcacccc cggcagtgct
      421 caggagaaaa gcatggggag aagattgcta aatggcctat ttagcgagcg gcagccgggc
      481 cgcgcagagc cctccccgag cgctcgctcg cttcagcagc atccccgcgc cctgccc
//
LOCUS       KCOD01003060             560 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 340188pyr ultra-conserved element
            locus uce-5692, sequence.
ACCESSION   KCOD01003060
VERSION     KCOD01003060.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 560)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 560)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..560
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="340188pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>560
                     /note="ultra-conserved element locus uce-5692"
BASE COUNT          143 a          117 c          112 g          188 t
ORIGIN      
        1 tttgtagttc tagactcacc aacactttcc atgattgaac aaggttggtc ttgttggtct
       61 cattttcttt tttccttctc cttgcaagta gccctgttgt taagctgttc tgtgattaag
      121 taaaataaac aaactatggc cttaattcct ttcagtggct gcatcaactg ctaattccac
      181 agctggtgcg gccatgaatt ctttgacttc tctgggtact ctccaaggac tggctggagc
      241 cactgttgga ctgaataata ttaatgcact agcaggtacc gtaaacagtg agtatttatt
      301 gctgtggtgg acagccttcc ccaataatca tgccaccaat tgtaaagtga taatatgatt
      361 ttaatctcta caccaaataa tccagttcca tcatggtaca ttggagtctt ttagtttcac
      421 acagtttgct ctgcaaagtg aatttccttg ggtcctgcat aaagactcct cttcttgcag
      481 tacatatgga aggtaaaaga attgtcacca gggctttggt tgtctaggtt ataggagagg
      541 ctccattttt gacaacaggt
//
LOCUS       KCOD01003061             620 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 340298pyr ultra-conserved element
            locus uce-5397, sequence.
ACCESSION   KCOD01003061
VERSION     KCOD01003061.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 620)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 620)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..620
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="340298pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>620
                     /note="ultra-conserved element locus uce-5397"
BASE COUNT          169 a          155 c          135 g          161 t
ORIGIN      
        1 acaaactcac ctgctctttc ctaccttctt gcataaaaca gttccatcac agaagaaccc
       61 tgccacattc ttccccaacc acctaaatgt tggcctgcac ctaaactggg ctcaatccag
      121 ccctttgtgc tgtggtgtta acgtaagagc tgctcccaaa ccagaagaac ctggcatggc
      181 aggggttaat gggaggggag ggtgagacta aagaaaatag cccgacaccc agcttgtttg
      241 atggagatgc gacctggcag cattgaaaag cttcaagatt aatggagaaa aggcggaatc
      301 tgacagcttt tccgctggtt tcactcctcc tgggtgggcc gattgctctt gaatgtcact
      361 tgctacttaa tcttgtgtat ctgaaacaga ctgatgtgtt tggggagccc tgctctctct
      421 gtatagacat caattggcaa ggcagataaa aggaaactgc attgaattac tctcttatgc
      481 cttttataga gcactttctg actacaaaat aattagtagc ctcacccaac gaaacccatc
      541 gtggttaggg tgctcgttaa acggaggaga aagtactgct tactctcttc cagctccttc
      601 ctagagctac catcaaacca
//
LOCUS       KCOD01003062             459 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 340407pyr ultra-conserved element
            locus uce-2899, sequence.
ACCESSION   KCOD01003062
VERSION     KCOD01003062.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 459)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 459)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..459
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="340407pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>459
                     /note="ultra-conserved element locus uce-2899"
BASE COUNT          141 a           81 c           93 g          144 t
ORIGIN      
        1 ttacagagga atcagagtga ggtattagca cactgagtaa aatatatggc tgcaacgcct
       61 cccccatcca caatcaattg gattctttta gtttaatatt tacttgctaa gatgagatgc
      121 tagtctgcat ggtgataaac agtctgctac tggcatctga aggtgacctg tcagttcata
      181 tggacaaatc tcctgcttac tgaaatgtac aaaataaatc attaaagcag gcaggtgctc
      241 attcccagat ttaaatcacc atagatttat gatttgaatt aatgcttcat ttggtcatag
      301 aaatagatgc tgagacaaat gatatgcagt ggttggggct tccatactgt agccatccta
      361 atattgatta ctgagatgtc tttgcaatct cttgtttata tcaagtactg tcttgtgaca
      421 gcttggctga tatgagctac attgcagata agaaggaaa
//
LOCUS       KCOD01003063             584 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 340516pyr ultra-conserved element
            locus uce-4325, sequence.
ACCESSION   KCOD01003063
VERSION     KCOD01003063.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 584)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="340516pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>584
                     /note="ultra-conserved element locus uce-4325"
BASE COUNT          177 a          114 c           98 g          195 t
ORIGIN      
        1 ttttatattt gtttgcatga ctccagtatt atttataaag ttttgaacat ttactcatat
       61 ctgaaatttt ctttaagaaa aggggagaaa aaaatactta gctttgagac tctttgaaca
      121 tgccttttcc cccaattctt ttaagtttta tgctatgaaa tattttctga taacaggcct
      181 catttctgtc tcagctccac accagtaaga ttttaatact cagcgtgtga tgagagatga
      241 aaccaagtgt gaacaacttt tgggtcccat gagtgggctg actgttgaag ctgtcaggtt
      301 caattgcatc attccacatt attcaatgcc ccaaactgct ccctaattgt tagaggctta
      361 acatattcaa aaccattgtt taggctaatg ctgaaatgcc tacagttgag tttccataaa
      421 gaaaggggag tagttaaacc attactgaac tctcctcctt tcatgatagg gcaacaggga
      481 tggccggaac aaccaattcc aagacagctt cttaatcagt ttatatccaa tcaacactgc
      541 tttaaaaatg tcattgctat attgtagcta tcatcataat gctt
//
LOCUS       KCOD01003064             745 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 340626pyr ultra-conserved element
            locus uce-1925, sequence.
ACCESSION   KCOD01003064
VERSION     KCOD01003064.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 745)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 745)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..745
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="340626pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>745
                     /note="ultra-conserved element locus uce-1925"
BASE COUNT          195 a          174 c          155 g          221 t
ORIGIN      
        1 atgctcacag caaagcttgt tttcacagcc tttatgtgga tctctgttta tttggatctg
       61 ctgtctggat ggggttctta gagaccaatt tcaaatgatc caaacactaa tgaagaggct
      121 actacgcgca caatagcttc tggttgctca tatatatgga ttcctccagc ccatgaatac
      181 agatctataa gaagcaccat ttaatggtta gtgtgggttt ttgtctgaaa tttaccaaag
      241 ttttatccca gctccctgga gtcctcccca agtctatcta aaatgcagtt agagcagagg
      301 ctgtcttttg cttcacagag cgtctgcctt atgctttcat cagagtagtc taactcacac
      361 agatgcacta tttaacaatg ccatcccctg ctttcatcag aagggggaag gttgcagagc
      421 tgagccctga agaataaggg gggcaggtcc cctgtgatcg gcgaaagctg aacatcggtg
      481 ccagtttcca tctgtcatga tagcctatct ccgaaccttc aatctgtcaa aagcttgctg
      541 cctagctgaa ggctccagga gatttggtgc actaaacaca tttgacaaca gcattatcac
      601 tgcaaggagc ccagcaaaat gccatcaatg tgttaattgt agccggctat gtaaaatgtc
      661 acttcccata tcattttaca gcggctttgc ctattttgca gctcctaatt ttccaccctt
      721 tataaatacg tggattgttc atgtg
//
LOCUS       KCOD01003065             573 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 340737pyr ultra-conserved element
            locus uce-6723, sequence.
ACCESSION   KCOD01003065
VERSION     KCOD01003065.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 573)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 573)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..573
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="340737pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>573
                     /note="ultra-conserved element locus uce-6723"
BASE COUNT          176 a          130 c          107 g          160 t
ORIGIN      
        1 tggcgccgga ccggccctgc ccgctgcgcc ttcacttttc caagggctcg attccccggc
       61 agccggcaac aggaataaat tacaaagccg cacttaatgt tagtgactct ttaaatggaa
      121 tttttcattc aaactttgtc attaaaatag aaaggccttt tggttgtgac catacaggca
      181 taataaattg tatatgtttg cgatactgaa tgaatcttgc ccatatgctg cactgcaagg
      241 ctacatgaat gaagcattta ccaaatcagg cccaccacat taaacagaaa aacaatcttt
      301 attcatggta acttatcagt tacaattaat caacctcaac aatagaaatt ctgatgtgtt
      361 caagcaactt gaaagcaata ggtcatctcc agggcagcca tgttgtgtct ttgtgcctat
      421 ggcttcaaac aaagcaacat ctccaataaa tgtacatccc cacacacaga tgtgtgacta
      481 tatctgtata aacatccagg cgcgctgaag gccctggtgt acacgtacgt ctgtacgtag
      541 aagtgtttat ttttgtcata caaaaagtaa ttg
//
LOCUS       KCOD01003066             545 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 340846pyr ultra-conserved element
            locus uce-99, sequence.
ACCESSION   KCOD01003066
VERSION     KCOD01003066.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 545)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 545)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..545
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="340846pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>545
                     /note="ultra-conserved element locus uce-99"
BASE COUNT          195 a          109 c           64 g          177 t
ORIGIN      
        1 gtaattacca gaatttcatt ttcattaact aataaaccaa aacaatttga gtatctgaat
       61 gtcatttttc aaaggaaaat aaactgtaaa catttgaata acatcacagc agggataata
      121 tacctaagga aacctattga aatatgctgg agaattcctc ctctttcatc acattaaaac
      181 tgcaattgac tgtaaacctc ctaccactct ccgctgagac tttaattgta aagattcctg
      241 ttacacatca tattagaatt tagttaaaat tgtagaacac attatttcca atcagacagc
      301 caaccatcac tcacaaagat ttttaaaaag gtgattaata attcatctca gataaggaaa
      361 agatctatat ttataccatc ttctcagcca ccataaacta cctgacaatt gttcagtaat
      421 gatgcccagt aaattcttta aaatggtaat ttgtcattct gtcacttcat ttgtgaccta
      481 aaattcctca cttgaggcat catcaaataa attaatcact ttccaggatc catttctctg
      541 ttctg
//
LOCUS       KCOD01003067             314 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 340952pyr ultra-conserved element
            locus uce-6313, sequence.
ACCESSION   KCOD01003067
VERSION     KCOD01003067.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 314)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 314)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..314
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="340952pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>314
                     /note="ultra-conserved element locus uce-6313"
BASE COUNT          140 a           37 c           63 g           74 t
ORIGIN      
        1 atggatagaa gtgtacagaa cagggaagaa aaagaagcca ctgacacagc agaaggagca
       61 aattcactca tcaagatttg tgtttaaatt atttgaaaat atacggcatc tgtttaatgt
      121 ttaaagcaaa agaaagtgga aaagtaactg agcatgagat agctttcaat aaataatcat
      181 ggagtaaata ggtaaatacg catgggagca ctgcaaatgc acaagtagtt ttgtgccaat
      241 aaaatgcaaa ggataaaaat aaaatacaat acagctgcaa aagtatttat ataaatcatg
      301 aaaatgtaag gaaa
//
LOCUS       KCOD01003068             746 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 341056pyr ultra-conserved element
            locus uce-2911, sequence.
ACCESSION   KCOD01003068
VERSION     KCOD01003068.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 746)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 746)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..746
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="341056pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>746
                     /note="ultra-conserved element locus uce-2911"
BASE COUNT          165 a          202 c          187 g          192 t
ORIGIN      
        1 tcaccaaagt tcctccgcca ctgctccttg cttaaggatg ctcctgaaat gctttctgac
       61 cccaactgcc cttcagctga gaggcccctt tctccagcag ctggccctga atgaattaaa
      121 caggggatcc tgcatagcca tgaggaccct ccagatggat gaatccgtgt tgctgaagcc
      181 tttcatggca ctttctagag gactctagtt aaaagattac ctaggcaagt tgattgagtg
      241 taaaacgtgc tgtacctgca atgttctcct gcttggggca aattcctttt gtaggcgtga
      301 gaagacggtc ttcttcatcg ggtgtgactt ggatcccgat ttccactggc tctgacactt
      361 tcctgagctc ggcgcgtgag gagggaggag ggctgctctt atccatgctc ttttcatagc
      421 agacaccact agtgccattg cactgttttc tcttgtgctc tataaaaacc aagatgtctc
      481 ccagcgggaa gttcatctga cactgtccac aggttaacaa gtcggggtct gtcccgcctg
      541 cggcgatgct gatgccgcct gggtctgcta ttgccaggct ctcatcctcg tcggccagtg
      601 ccggttccac atggtcagcc tctgctttgc acggacaagg agaaaaaggg gagaagagaa
      661 agagattgct ttgagtgttc actgaaggat gcatcaccag aggcccagcc tccccccact
      721 caaagaagcc aagcctgatt agatct
//
LOCUS       KCOD01003069             689 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 341167pyr ultra-conserved element
            locus uce-5554, sequence.
ACCESSION   KCOD01003069
VERSION     KCOD01003069.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 689)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 689)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..689
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="341167pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>689
                     /note="ultra-conserved element locus uce-5554"
BASE COUNT          236 a          166 c          108 g          179 t
ORIGIN      
        1 agtaatgaat cacagctgtg gacagctaat ctgtatgctt atcacagcaa atcctgatgc
       61 tctgtatttt tttaacactt tgcatcccaa aacaactcat aaaatataaa acttactgct
      121 gccatctaac aagcacactt ctgcaaattt actgaaaact ttatgaaagc gtataattca
      181 ctaattccta tttataagca aagcatagga aagccccttg ctaaaaaggt agtaaaacaa
      241 acaaaaaagg cctcattaaa tatacgaaaa cgttttgctt ggaaggactc aaaagggtta
      301 ttttccctat ggcctctcaa taaaataacc ctatctgccc ccttcaaggt tgccctcccc
      361 ctattctgag tcaagcgacc tccgacccct tggagggcaa agacatgact gatccattct
      421 tggtaaactg ctaaactcat tcccttcccc caaacaggca tgactactac gacatgtcaa
      481 caaatcctta cggagggatt gaaacaaagc aaagccagcg gctcattaaa accgcagcag
      541 agagcccgcg gtaccaaatg ccaatcggta aatattcaca agattattaa atgctgcaca
      601 agttctctaa cgggatctct ttcacacgaa cttgtatgta atgcaatttc atgaattatg
      661 caaataaagg tttcaactat tcacgacaa
//
LOCUS       KCOD01003070             591 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 341274pyr ultra-conserved element
            locus uce-8045, sequence.
ACCESSION   KCOD01003070
VERSION     KCOD01003070.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 591)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 591)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..591
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="341274pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>591
                     /note="ultra-conserved element locus uce-8045"
BASE COUNT          204 a          138 c          106 g          143 t
ORIGIN      
        1 aacctgtatt atcagccaga ctgcgagcca ttctcaggga ggtaagagtt gatgcccccc
       61 aacagaattc tgcccaaagc aaaacagcaa agaagaagaa ttagaagagg aaactacttt
      121 ttcctctgtt actgtcagct catcagtgct aaaatacctt gaccctttga agactttaaa
      181 tcaaaagata tggaaagcaa acttacgtga gtatgttcat aaatacagtt gtcaatgaca
      241 tctgcaagag ttgctccttc atccaacaga ccaatggagt aatttgcatc ctcaagaaat
      301 cctttcatct cagccgtatt ccacaaagcc gacagtcata aaccaagaaa cacaagggat
      361 gggcttccaa gccttatatc cgggtcctta aattatgcaa caaactgtac acagaaaaaa
      421 agaggcacaa cagctttcta cacctgatgt cctacaaaca gtaacacaca ctgtgctcac
      481 ccgtcaggga taggatagaa caattctatt gaagccaaga gaagctgtgt actttaaatc
      541 tgatactaac ttcccaagac tgttcttgag aattccagtg cactgagctt a
//
LOCUS       KCOD01003071             643 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 341387pyr ultra-conserved element
            locus uce-268, sequence.
ACCESSION   KCOD01003071
VERSION     KCOD01003071.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 643)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 643)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="341387pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>643
                     /note="ultra-conserved element locus uce-268"
BASE COUNT          188 a          139 c          156 g          160 t
ORIGIN      
        1 aaaaggcagc accgaaacgg tatgacaact gcgagggtgt gctgcctctt cccacattcc
       61 tggcgagaca gatggtgtta catgggacac agggaggttt gttcaaacag cagcaacctt
      121 caaagatcaa gcagagccca gcccgccgcg cgccattgag ggacccgcgc tcatatgttg
      181 ctgagttgca taaacaaaca gcaacagctg ttttgtctcc ccccatcgcc ctccgaggac
      241 tactataaac tttagttgtg ccactgttaa tatgatacaa tcattttaat ttactaattg
      301 taaatgccat gagcaaatga ggggactttt caacaccaaa gctaccattc ataatgcgcc
      361 agtaccagcg cactcttgca tgtgaaattt caggcggtta cgttggataa atatccaggc
      421 gggccctccc ctggtgtttt taatgatacg aggcggaaga accttacggt ggatcaggtt
      481 aggatatata tgggaaaatg tgtttgtcta ctgggaagcc acgggaagga aagaatagga
      541 gaaagcgctc tggagccatt tatattgatt taagatcaag caaaagatac agttctctta
      601 aaatgctaat tgcagaaatc gtgtgattag gaagatgtgt gct
//
LOCUS       KCOD01003072             568 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 341497pyr ultra-conserved element
            locus uce-110, sequence.
ACCESSION   KCOD01003072
VERSION     KCOD01003072.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 568)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 568)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="341497pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>568
                     /note="ultra-conserved element locus uce-110"
BASE COUNT          243 a           97 c           86 g          142 t
ORIGIN      
        1 acagaatgag cgagagctac acacagagaa atgctttcaa aacacaagca ttttttaaat
       61 gttaagtgag atgtaaatat gtatggtagc aacaaagtgc ccaaaagcat actgaaaaca
      121 tgttccatac acagttagca atagaagtct gtacaaaagt aataaagtta cacattataa
      181 aaaatactcc ataactataa tttaaaagag ggaagggaat tgatttctca gttcatataa
      241 tttattgcag ttagcacaca gtttaaaaat tcaccaacac accaatagta caaaactaaa
      301 cagcattata agttattccc tcctcaggaa aataaaacat actatgattg tcaaagctag
      361 atgtcagtct aagttttaga acaaaagaag aatgtgaaac taaggaaagg aaaaaagcaa
      421 tcactcacga ggaccacaaa aaaatccaag agaaagtcca ttttcctcag acactgattg
      481 tcttttctaa attaagaaaa gaatgtagtt ttaaacctag aaactattca agtaactaaa
      541 gataacgctc caaggccatt ttcacagc
//
LOCUS       KCOD01003073             495 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 341607pyr ultra-conserved element
            locus uce-690, sequence.
ACCESSION   KCOD01003073
VERSION     KCOD01003073.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 495)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 495)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..495
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="341607pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>495
                     /note="ultra-conserved element locus uce-690"
BASE COUNT          157 a           86 c          106 g          146 t
ORIGIN      
        1 ctctcttcgg gaaaaatact agtgttgagc tgtttgggat tctttctcac tggggcttta
       61 aaattctaaa gaacagataa gagcaaacag caaataactg gatttagaat aaactcagaa
      121 attatcacta aggcccttcc tctgccacaa tttgtcaaat ctgctgatag gaaacaaatt
      181 ctattcataa agattttatt tttttggggc cctcttgtga tttggtagca attcaattat
      241 agttttgtga gatagtgagc ccggagaggg aatccagact gacaagaaat atgacaggac
      301 agttacagag tgtttatgca attaaacttt cactgacaat acctgcggaa tgatgaatgc
      361 gtgggcggag gtatgtgtgc acaagcaatg ccccacaagt attgcacatt tttcattatt
      421 atacaactgt tcagatcttt caagaatagc ctgaagtgag gtggaaaaga gagtgctgtt
      481 ccacagcatg ttaac
//
LOCUS       KCOD01003074             457 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 341719pyr ultra-conserved element
            locus uce-6987, sequence.
ACCESSION   KCOD01003074
VERSION     KCOD01003074.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 457)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 457)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="341719pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>457
                     /note="ultra-conserved element locus uce-6987"
BASE COUNT          119 a          105 c          100 g          133 t
ORIGIN      
        1 agctttacca atttagcttg ctttctactc ttattggtgc ttaagaggtt aagactttat
       61 ttgtgaaaac ggggaatcgt gttgtctgga gcttcctaag tcttgcttaa gatccttttc
      121 aattaccatc catttctcct ttaaaaaggg acatagagga gtggaagcag gtcagggcag
      181 cctgtgacaa tgacagtgtg atgggctcgg gccccccgtg gcgtttccat ctgctatcat
      241 taaggtgact attcagacat gaaaaaatcc ctctcgctgt gctgacaggc agacatcaag
      301 aactatgaca aggcattaag acagaaagtt gtcatatccc gcaaacaatc ctgcctcttt
      361 tattggaatt tggggttatc aaacctcgca ttagtttgcc atcgaggatg ctgctgacag
      421 ccacagacac acttagctcc tacctgtagt ctctacc
//
LOCUS       KCOD01003075             482 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 341824pyr ultra-conserved element
            locus uce-7533, sequence.
ACCESSION   KCOD01003075
VERSION     KCOD01003075.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 482)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 482)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..482
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="341824pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>482
                     /note="ultra-conserved element locus uce-7533"
BASE COUNT          120 a           82 c          110 g          170 t
ORIGIN      
        1 cagtggttga atgaattttc aggaatttta aacttggttt gatctttaat ttctagtttt
       61 cttgagtgtg gggtagggga actcgaatgc aacgtgactt tcagtgatct ctgagctgtg
      121 ttttagggac tgtgtgtcgg tggctcacag ctcactacag tacaggatat gatctcaatg
      181 tagtgcatat aaaactgcag attgattttc cttgagtgct ttatactgtt taattacatc
      241 tccatgtagg gctgaaaaaa attacctatg tttatatata actgtgttgc ttttgatgtt
      301 gtgttctggc cggtgcgcga tgaggtggtc caggtacagc acgatagccg cgcgagttca
      361 gtactgcttc cgttcattgt ttacgctgga attttttctc cccatggaat gtaagtaaaa
      421 cgtagtgttt gtcaccaata aatggtaata ctaaatggtt aatttattct tacaccacca
      481 ca
//
LOCUS       KCOD01003076             752 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 341937pyr ultra-conserved element
            locus uce-1832, sequence.
ACCESSION   KCOD01003076
VERSION     KCOD01003076.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 752)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 752)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..752
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="341937pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>752
                     /note="ultra-conserved element locus uce-1832"
BASE COUNT          235 a          159 c          130 g          228 t
ORIGIN      
        1 tttgcacact gagaccaata aaggcactct gaaaggaaag aaagtagcca tgtcaaacca
       61 tacgtgcaag ctcacaaagc tgaaatgcca tcaccatatg taaacaggaa atctatctgc
      121 attttagtag ccctctatct aaaccccact ccctctggaa aaggtgtgtt cagcagtatt
      181 agagtttgtt tgtgcttatt aaataaaaag aaaggatcac cttcaaccat attaatgatg
      241 gactggtgga tgaaggatgt ctgcgaaaat tcacaacatc tgtttgctcc actctcttct
      301 cagtgtgctg cacctattcc tcatgcttaa tgatgctcat ccactctgca agttttacga
      361 acaaatgtgt gtttagccac attcatcatt ctgaatgagc gttcttgatg aagcatccac
      421 tggcctgttt cgctctttct gctacacttt aacaaatgac aactgctcta cgtatttttc
      481 atttgttaaa aataaaaagc taagtgaaga ataggcccag caaatttttc ttttactcct
      541 ctgttaactt tactggaaaa tggaatacaa catgcattta aactgcatgc aagttcacat
      601 gcacaaatct aaatggtgca tacagatgtt taaaaataca gcagaatagc ataacagaca
      661 aacattcttt ccaacaggag tagttccatc ttcttatgaa ggtgatgtat ttctcactct
      721 gatcagcttg gggactgatt ctgtgatgtt ca
//
LOCUS       KCOD01003077             521 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 342047pyr ultra-conserved element
            locus uce-5334, sequence.
ACCESSION   KCOD01003077
VERSION     KCOD01003077.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 521)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 521)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..521
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="342047pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>521
                     /note="ultra-conserved element locus uce-5334"
BASE COUNT          172 a           99 c           94 g          156 t
ORIGIN      
        1 agacagaaga gagaggtaac ctaagctgta tttttctttt attttgtcaa taaatgtggc
       61 tcttaaaaat ttcaaccaca tctttctaag gtaacattta cctcctcaca tctttagcat
      121 ctatcagaca tgacatggga catattcatt gaccctaaaa attttcatca gtctcatgca
      181 ctggaagggg gcagccccag ccagacaaga ggctcatttc aattttaacg gctgtaatta
      241 aaggttaatt cactgagtca ggattaacga ggaaagtaca aatgataggc aagcagctgc
      301 ctttataata caggattaga acaatgcaat tacaataaga attagaaaaa atcaacttcc
      361 tgaaaaggtt ctgtaatgaa ttactttctc tgttcttaac tgtggttgag cagcacattg
      421 ttgttgtact aacagttgat caacagtgtg tctggtatgc caaccacagt gacagcaact
      481 gttaaaattt aatactgtgc tctactgaaa gccttcagac t
//
LOCUS       KCOD01003078             491 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 342156pyr ultra-conserved element
            locus uce-6390, sequence.
ACCESSION   KCOD01003078
VERSION     KCOD01003078.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 491)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 491)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="342156pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>491
                     /note="ultra-conserved element locus uce-6390"
BASE COUNT          168 a           79 c          100 g          144 t
ORIGIN      
        1 tttgcattat ggaaagaaat atacaaaact gtcattagca aataggaata tcattgtcaa
       61 agacttaaca tttactagaa ggcaatagct tgaaaacctg gttttaattg tgcatgcata
      121 tttttattca ttaaaatgag caaccaataa aatcccgcac tatggtgtcc cagcctcata
      181 acacattaat aaagtttctt aaaggttttg gcagggggcc agcacagtcc attaactcct
      241 tgcaagttgt aaaaagaagt aaagtcattt tgggctgcct tgtggttatg aatgaaacag
      301 caggcagtct gtatggaaac gtcactttgg atatggcatt ggtaatggat gctttgctgt
      361 tcaatcaaag cagcatgggg ataagttaat gcactgaatc acaatctaaa tcctgaggaa
      421 ctgcaaaact aatttagtta aaagtggaag gaaaatccaa gttatgaagc tctgagtatt
      481 ttcctagtag g
//
LOCUS       KCOD01003079             570 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 342263pyr ultra-conserved element
            locus uce-2096, sequence.
ACCESSION   KCOD01003079
VERSION     KCOD01003079.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 570)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 570)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..570
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="342263pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>570
                     /note="ultra-conserved element locus uce-2096"
BASE COUNT          158 a          102 c          107 g          203 t
ORIGIN      
        1 ttctttccta tataggtgct tgaattacta gtagttattt ttgcctcgct ttgctaactg
       61 ctataaaagg gaaaagcacc tagttcagac ccctatattt gagattttta cctttttgac
      121 agttgaggag atgttgaatg gaacatcata ttccttattg taaaagtagg atcataatta
      181 taaagctagc tgcattcatt aggcagagct gctttaaacg caagagtctc ttcatctcat
      241 cttaatcatt atattacaaa gtaggcattt ctgtctgcct agtggcatgt cttgcaaaag
      301 aacgagagag tttttgaagg caaaaagaag aagggggcca attatcggct tctgcttccc
      361 tgccacctgc cagcgctttc cttttaatta atgatctgat ggcactggtc aatataataa
      421 gaaatgcttg tacagttggg gtcagaaaat tcaggctttg atcttcttca actttgtgaa
      481 acatttattt gttttctcta aattatttca gttttatttt aatctcttct atcctgctga
      541 gggctgcgtg aatgaaaacc tatactgttt
//
LOCUS       KCOD01003080             679 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 342369pyr ultra-conserved element
            locus uce-7010, sequence.
ACCESSION   KCOD01003080
VERSION     KCOD01003080.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 679)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 679)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..679
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="342369pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>679
                     /note="ultra-conserved element locus uce-7010"
BASE COUNT          225 a          119 c          124 g          211 t
ORIGIN      
        1 tgctagtata atttagcaag taacacattt caaagagagg agaaacagaa acacaattgt
       61 gattaatcat gctcattatc aactcagact tatgacctgt gtgaattttg gtggatggga
      121 ggaggggtgc atatgtgtgg aatgagagat gaaaaataca ctcgtttctc tgccaataaa
      181 atgacccttc caccctctca cttttcagcc aaaagttagg tggatgtcta aggctggcta
      241 aagccttatt attaagttaa ctctaggtgg tttccattag ccttacagta catgccactg
      301 agcagacata cagtaactga attgtttcaa cttatccaaa taacattgaa atagacttaa
      361 ttgttgaact gcaggaaaga ccatgtgtct ccagagacta ttagtgtcat ttaaaaggct
      421 aaatgtatca taaaacctgt ctttaacaga ataaaattgt acagaccaac acaattttag
      481 ctaatgtttt ccacatttct tgcaaagtca ttggctgtaa aggaaagttc ttaacatttc
      541 taggagttat ttcagtgcag cacttcccaa ctagttttaa cctagttttt tactattgag
      601 caatttactt tgaaagtagg caaaacctac aggatttact tacagaacat atttctattt
      661 atcgtgagta aagagaggc
//
LOCUS       KCOD01003081             548 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 342472pyr ultra-conserved element
            locus uce-2400, sequence.
ACCESSION   KCOD01003081
VERSION     KCOD01003081.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 548)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 548)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..548
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="342472pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>548
                     /note="ultra-conserved element locus uce-2400"
BASE COUNT          135 a          123 c           96 g          194 t
ORIGIN      
        1 cctgcatcat taattgattt cttccataca ttgtgctatg atacaatttt tcaagcctgt
       61 gcataattgt gttccctgtg ccactgctct atgttctgtc cttgtcatat tgtcattgaa
      121 ggctgattcc accctctgta attggagatg ttctactttt ggacaaaggt gtgggggcag
      181 ctcaggggaa cagcgctgac atttacttca tcaatttatt tttattgttc ctacatttat
      241 tgcagctata acagcccttt aatagttata tctcctccct gtagggtatt ctggtatttg
      301 aaattttttt aactcatttg ttctcataga taacagtaaa gtgcatttca cgctaacctt
      361 taggtttcaa tcttctctct ttctttggct ccgaagcagt tgcagcttta aacttttact
      421 gcattaccag tctaaaggcc accaccaccg agtccattct agcactggag taaccacaaa
      481 ttagtggtcc tgaaaatttc agggaggcga gtcctaaacc ctgagtgccg ctattaccat
      541 aattcaaa
//
LOCUS       KCOD01003082             575 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 342581pyr ultra-conserved element
            locus uce-5555, sequence.
ACCESSION   KCOD01003082
VERSION     KCOD01003082.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 575)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 575)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..575
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="342581pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>575
                     /note="ultra-conserved element locus uce-5555"
BASE COUNT          207 a           96 c          104 g          168 t
ORIGIN      
        1 cttcccattg gtaataaact attccataaa taaacagttg ctctgtttcc ttcttaggaa
       61 aattaccttt actgcttgga tagattttcc gatatatagg tcaacctgtc ctaaccttgt
      121 ctgaaggaaa atgagaaatg ttccctatga acaacataat atgtaatggc actgtttgca
      181 aacaccaaat agcagtagac tcaagaactg cgatataaag ctatcaatta attttgttgt
      241 aactgtatgc acctgtgaac aactgcttaa ttaaagaggc aaacagaaat ctctcacaat
      301 aatgtttcaa attacttaca tttatgtgac tcaattagtt ggagtggata aatacaattg
      361 gaaagctgcc atgtggactt ctggaaataa agaaaagata gaactgaaga gatacatggg
      421 aggactcagg cagaaaaata cagataattc ttcataggac tatacaaaca gagaagataa
      481 tcctgtgcaa ataaaatacc tcatttactg tcacagagtc tgtgttcaca gatgggaata
      541 ttaaggagat tgtttgcttt ggtcagaata tgcac
//
LOCUS       KCOD01003083             738 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 342691pyr ultra-conserved element
            locus uce-1893, sequence.
ACCESSION   KCOD01003083
VERSION     KCOD01003083.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 738)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 738)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..738
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="342691pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>738
                     /note="ultra-conserved element locus uce-1893"
BASE COUNT          222 a          150 c          158 g          208 t
ORIGIN      
        1 aaggaaacat cttctgagaa ggcagctcca ggcagctctc catgcccagc caagttcatt
       61 aggaggcttc actcttggca atgatgcaat atgccaatag cctctgcttt aactgattta
      121 ttttaagcac aggaagaaaa gtcaagattg gacccagaag gaaacaattg tttttggcct
      181 attgtggtgg agtttacatg tagaggtgcc ttctagtcta gttgctgaag gggaaacaag
      241 tacaaatatc tatgccttgg ctgttagggt ctgattataa gcactgtgct agagaattca
      301 tggattattc atgtgtaatt acagatagct attgtgctct tttaaatcat ccctatagcc
      361 cattatggcc cataacaact gaaatagcaa ttgtcatagt aaggtttggg ctctgtcata
      421 gagtgtagac tctaatcaat aatgatgaat ggcaaaattt agcgtcaagc aggagaaagt
      481 ctagttgcct cccgccataa atctgtgcaa ataccaagtt gtgcagctgc tgtatctgga
      541 aatctaaaag gcaacactct ccctccaaca catgcacctc cataaaagtt gaaaaaggag
      601 aaatgtgcaa tatgtccatt ctaataatcc gcatgctgtt aagacacttt tctatttatt
      661 caaagcaggg tgaaccctag gttgttttca aggtcaattc caggtgaaag gggtcatctg
      721 gaggccacct cgactccc
//
LOCUS       KCOD01003084             743 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 342802pyr ultra-conserved element
            locus uce-1526, sequence.
ACCESSION   KCOD01003084
VERSION     KCOD01003084.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 743)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 743)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..743
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="342802pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>743
                     /note="ultra-conserved element locus uce-1526"
BASE COUNT          241 a          119 c          124 g          259 t
ORIGIN      
        1 ggacagtatt tatgtggtca ccctgtgagc attgacaccc aaaccaaact gttcatgcaa
       61 cagcccagaa tttaaattgt tctaatcctc tgcaggttat tctaatgccc ttgttatgaa
      121 ttctgtaata ttttttgcaa actcatataa gcaggtaatt gatgcaactg aaattcttgt
      181 cacatattta ttgcactatc agctttttta agtgacaaga agcaaaataa tcattaattt
      241 ttatagggca aggatctggc tttttgtttg acacaaagct gtataaaaaa ctgcttctga
      301 ttttatgcac attgttttta gttaatgatt ttcagctgtt tgttgttcct ctgatagcat
      361 gaaaatgtac catatgctca gccaaaagac aaatgattag caaatgaaat tctggacagc
      421 tgtctgactg aaagcgtttg gttgatagca ttctgctatc ataattagct taagctttgg
      481 gttaattaac tttctacctg gatatgcata ataatagcaa actgcaaaaa gcaggaagct
      541 ttcagtacat caacaacatt gctgtctttt ttatttggta tttcaagagc atattagaat
      601 ttcaagagtg attaatcctg ggaatattgt catctactgt agattttatt tgcaagccag
      661 ataatactga aacaattgga atctattata cagcagaaat agcattttaa aattgtaatt
      721 aaagtttcta aaagcaattg cta
//
LOCUS       KCOD01003085             622 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 342912pyr ultra-conserved element
            locus uce-6346, sequence.
ACCESSION   KCOD01003085
VERSION     KCOD01003085.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 622)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 622)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="342912pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>622
                     /note="ultra-conserved element locus uce-6346"
BASE COUNT          181 a          100 c          131 g          210 t
ORIGIN      
        1 tctgtagttt gttcatgaaa cagctgatgg acccaaggtc aatcttcaca gagaaatttc
       61 tctttgtttt aggaagaatt tagaggagta attacctaaa ccagtggtta taaatctaat
      121 tccttgttct gatgccctgg agaagagttg tattgtagtt cagcaatacg gcttcagcct
      181 agtcttgagg aaatggtgct ttacgagagc agagttaaga ggatcgcatt caaaagtatt
      241 gtttgttgaa catacatggt tgtatccaat agtcttattc agtgctacaa tctttttgaa
      301 cagggaatgg ccaaatccag tgctattgaa acagccagaa gaatgcaatc ttaatttgcc
      361 tgtatgggac ccaagggtta gtgtgttatt ttttcccctc taagtcacac tgtacaataa
      421 atccggttgc tttctcaggt gaacttcatt ttgggtttat tgaacttaat gttgtggtgg
      481 cttcataagt aacttctaat ttgcctgaga atagaacaaa ttgacggttt gaagcacact
      541 tgcttttgca ataagtgatc gtgtaaatag tacatgtcta aagcaatgca tttttgaaaa
      601 ttgctaaaaa tggtttgctt at
//
LOCUS       KCOD01003086             505 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 343017pyr ultra-conserved element
            locus uce-3016, sequence.
ACCESSION   KCOD01003086
VERSION     KCOD01003086.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 505)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 505)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="343017pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>505
                     /note="ultra-conserved element locus uce-3016"
BASE COUNT          147 a           81 c           96 g          181 t
ORIGIN      
        1 atctgtataa ataaatgtga ggtctacatt agtaacatta ggtcttgcct gcatatgtca
       61 tatgttatta tgaaaaacac caaccacagg gctgcgttgg aagaaatgct tcggtgtaat
      121 caaattattt ttttgtctca atttttttca gaatgttttc gtagataaac cagcatttcc
      181 agaatacaaa gtttcagatg caaaaaaatc caaattcatt ttgttgcatt ttagcacttt
      241 taaagctggc tgggactggc ttattttact ggcaacgttt tatgttgctg tgactgtacc
      301 ttacaatgtt tcctttattg gccatgatga gctgtcgaca acgcgaagca caactgtcag
      361 tgacattgca gtggaaattc tctttatcat tggtaagata tgtttttgtt tgggatcgac
      421 atttaggatt ttcacagaat gcataatatt tagaagagga aataatcatc cctttcatga
      481 ctttatcaat gttaggtgta tggct
//
LOCUS       KCOD01003087             619 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 343125pyr ultra-conserved element
            locus uce-4988, sequence.
ACCESSION   KCOD01003087
VERSION     KCOD01003087.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 619)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 619)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..619
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="343125pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>619
                     /note="ultra-conserved element locus uce-4988"
BASE COUNT          169 a          125 c          120 g          205 t
ORIGIN      
        1 ttttctaatt tgaggacaat ctggtgctgc tctgaagtaa gatttttttt cccaaactcc
       61 tctcagctga tgaaaactgc ctgtcatgcc cactgctata aagagttgtg cctctcgctc
      121 tccatcactg tacagagaag cagcagatac ttctgtgtgt caagaaacca ggaggatccc
      181 acgtcattgc aaatgaacca tgaatgtcca gggttcaaag gacaacgaga aagacaggat
      241 gagtcatgtg acttttgtgt tgcaccctga taaatggcag gtcaaggagg gttgtgttta
      301 atagtatatt cctcaatgaa atgtcacttt ttcctcaatg tgtcctctgt gtgagctaat
      361 taaaatcatg ttttactgca atgtcagcac atgaagttgc tgactttctt gttgtcttct
      421 acatagtaca aaatgaatgt tgtcatttga taaattcagg atcttaaagg ttctgtctga
      481 tggggtctaa tgtatgccgc tctatatatg tttaatgctt tcaaactgcc tctcttcctt
      541 tgttcaaatc acagcattca tgacctgtac ataatgttgt ctcctggcat acttaagtcc
      601 tcaaaattaa cagaatttt
//
LOCUS       KCOD01003088             764 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 343233pyr ultra-conserved element
            locus uce-42, sequence.
ACCESSION   KCOD01003088
VERSION     KCOD01003088.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 764)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 764)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..764
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="343233pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>764
                     /note="ultra-conserved element locus uce-42"
BASE COUNT          250 a          137 c          120 g          257 t
ORIGIN      
        1 gtgtgattgt ctgatctggc tatgaggtct cagctctttg atctttaaag aattaggtct
       61 gtttgaaagg gaaaactgaa aactgatact gcttcaccac ctttgtctaa gacatagcta
      121 gaaaaaggga caaatttata cttcaaagaa aatacatcat catcaactca tttctctaaa
      181 tgatttcaca actacattaa ctacagaaat atgccaaact gagaatctta gtaatatttt
      241 agtctttgca tattttcact gactcactga aaacaaaagg agtttctgta actgtatgaa
      301 tgaaccatgg catgtgcatg ttcttttaag aaaggccaag ggtgcagttc tattttctta
      361 gctctgcttt catatttatg tgtctcattt ccagctcatt gctgatgcct tagttgcact
      421 atccatcaac acttttatcc tccttgttcc tcaaaaagaa cataaaatcc tggtttatgt
      481 cgtggtaata ttattgcaaa taaaagcaaa taccaaaatc tttattagtc tgccaaaata
      541 ataaactatt taataaaagc atgctgtaaa aataaggtca tttgcatcac tcaagtttct
      601 tgcagaaaat acagagaatt attggtcaaa aagtacaaac tgacagcaat tatttctgct
      661 gttgatccat gctgcctggc actgaggttt cacaagtttt ctatctttaa atgtttgctt
      721 ttaatgctgt agtatacata agagcccagg agaatcaaat tttt
//
LOCUS       KCOD01003089             747 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 343343pyr ultra-conserved element
            locus uce-4554, sequence.
ACCESSION   KCOD01003089
VERSION     KCOD01003089.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 747)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 747)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..747
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="343343pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>747
                     /note="ultra-conserved element locus uce-4554"
BASE COUNT          239 a          131 c          135 g          242 t
ORIGIN      
        1 caagcaatat ttcctgtaat aaacacccct aagtctaatg agaggcccta aggcaacttc
       61 aaatgtatga attcattata attgaacaac ataatctgca gggcaaagat tcctgctacc
      121 cagtctttta acttcgcacg gcttgggtgt tctatgaaaa atgttctaca ttttgtttac
      181 aatgtattgc tgctatttga agtattgtat gttcctgtag tacataagat ggggacgcat
      241 aatggaggaa aaatcaagga ggcaatcttt cattttgttc tggtatgaaa aattcaaaag
      301 actgaaaact cacccagaga aattttgcaa gcatattatt ttccgatgtt tcgatcaatt
      361 tgtctgtcaa ccatgctgag aggtggaagg ggccagcaaa agcaatttag cttgtgaggt
      421 ccaaaataga aatgttttag gaaaccttgt cacacattat ttttttagat gagaaccgct
      481 gtgtttttta tttgctagtc atattatgaa gagaaattgg tatcaatcat ctaaatcacc
      541 tatgaatatc tgatataacc gttacttttg tgcatataaa taaggcaaaa aatatttaaa
      601 tgaagctttt aaagcatagc aaaacctttg ggtagacaac aggctcccta ctcaggtttt
      661 cccatttacc ctgtgcgttt taattgattg tacccaagtg acatcatagt gaatcatctt
      721 gcatatgaac atattgacct ctctctg
//
LOCUS       KCOD01003090             637 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 343450pyr ultra-conserved element
            locus uce-4420, sequence.
ACCESSION   KCOD01003090
VERSION     KCOD01003090.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 637)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 637)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..637
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="343450pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>637
                     /note="ultra-conserved element locus uce-4420"
BASE COUNT          208 a          137 c          112 g          180 t
ORIGIN      
        1 tacatttatt agatcttgtt tcctgtgaac attgtatcat taattgtaca acagataaag
       61 taaacatgct ctgtctccat tcctccatgt acacacacct tagagagaga tgaagaaaga
      121 gacagaaaat aagtaaaacc tcaattgctt actgatctag agtccaaatt ccagttcctt
      181 agaacatttt tcccttttaa ctaaagtgat gcagtcccta ttcatttgta tttcccttca
      241 agtaacatga aatagctttc agagtctaca gaaaggcagt gtttcactta tgtattttaa
      301 tgagcaccaa tgtcagtaat aatcaaaatg atgtttcact tagaggaata gtttattccc
      361 aggtactttt gcagtgtact aacataacca gaacaagaat gacaagagga agagctgcac
      421 tctgtggagc cctcaaacca aatatacctc ccctatcact gtataaatgc tgctcaaaat
      481 gcagtcactg tgaagggctc acttgatagc caaccccaaa gacccctagc tgactacatg
      541 gaaagaagta gagcatccgt aagcacactg tggcatgcac agagtgttta tggattagca
      601 gccactacag caggtttcct caggctatca gctgtat
//
LOCUS       KCOD01003091             454 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 343560pyr ultra-conserved element
            locus uce-3555, sequence.
ACCESSION   KCOD01003091
VERSION     KCOD01003091.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 454)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 454)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="343560pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>454
                     /note="ultra-conserved element locus uce-3555"
BASE COUNT          130 a          106 c          110 g          108 t
ORIGIN      
        1 gggggggaag gcgacaggtc tacaggagga gggcagtctg cagtgctctc tctcatagat
       61 ctccagtggt gtctctgaaa caggagtagg aagcttagca aacagaactc cgggatccgc
      121 tccaaaacca catttaaagt caagtcactg gagtgggatt agtaatcaca atgctgcact
      181 ttattcacag gcagacaaag agcaatacca agggcatgac agcttaaata gccaaccctg
      241 acaggcagat gtaatgtaaa gaggctggct gtgcacctag aggtgaataa actcttgtgt
      301 actcctacat acttttcctg tttctgaact tattaagtca ctatttgtag ctcgacccct
      361 ggaaatgttt taggcatgcg gcatgtctga aaacatctgt ctcaaatctc ctggcacccc
      421 agcctgaagt ggtcaaacct tgtgacgcag acac
//
LOCUS       KCOD01003092             493 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 343667pyr ultra-conserved element
            locus uce-1850, sequence.
ACCESSION   KCOD01003092
VERSION     KCOD01003092.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 493)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 493)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..493
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="343667pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>493
                     /note="ultra-conserved element locus uce-1850"
BASE COUNT          147 a           97 c          107 g          142 t
ORIGIN      
        1 agcacccagg cctttcaggt gtaaaacaaa cctttgcaga gaggtgaaaa gggtgaatcc
       61 atggtgaatt ccctcgcact tcacaagtaa tgagagctct gattaaacat gatacagcac
      121 tgtttactaa catttcaatt tctatgcctc atttattaga cttagaataa aaaggttaga
      181 ggggtgtttg ggattgtctt taaccttgat gatatttcca ctgaagcagc ataatggctc
      241 ttaattgctt aagtgaagag aacatgttga catgtccttc tttgtgctta aagctctgtg
      301 cctaaccatt atgctaattc aagcattata tacaccaaag tatttatggg actgacacaa
      361 gtgatgttgc aggtaaaggg ctgtgaaatg gtctgtaaac agagagaatt gattccgggc
      421 ccagagcaat gctgttaaag tcacagccat tgagccgcca gccccacgat ttctctgcag
      481 attgtcacac tgg
//
LOCUS       KCOD01003093             431 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 343776pyr ultra-conserved element
            locus uce-2731, sequence.
ACCESSION   KCOD01003093
VERSION     KCOD01003093.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 431)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 431)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="343776pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>431
                     /note="ultra-conserved element locus uce-2731"
BASE COUNT          160 a           52 c           79 g          140 t
ORIGIN      
        1 tatcttttca gcataattat ttagcagcca tttcgggtta attattgtca ttaacaatat
       61 gagtcctatg agggaatatc aattaaaata tgcacagctg aactttcaaa tgagtaaata
      121 atttagtttt tgaaaatgac tggaaacagc agggtaacag tcaaaagggg aacaattatt
      181 ttaatgctta tttgacaaat gagtaatttt tacagcaaat tagtttctta ttgtagcacc
      241 cctactggta acaagagaga aactgttttt taaaaataaa acctgctaag atatgcatgc
      301 aaagttaagg aaataatttg tatgaagaaa aggtgattat gatacacatt gttagctgaa
      361 gaatgttgcc atgggaatct aattagggat ataaatcaca caaatttgtg tttatatata
      421 gggctggata c
//
LOCUS       KCOD01003094             365 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 343883pyr ultra-conserved element
            locus uce-3870, sequence.
ACCESSION   KCOD01003094
VERSION     KCOD01003094.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 365)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 365)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..365
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="343883pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>365
                     /note="ultra-conserved element locus uce-3870"
BASE COUNT          119 a           56 c           65 g          125 t
ORIGIN      
        1 aatacaggat attgtatttg gacttgattc ataagctact gtctgtgtac aaactagtct
       61 gacatagctg ctaaatactt tggggcgaac aaaaccactc agtgtatccc tttaaataca
      121 gatgctaata catctgttca gtgcaagaag aaaagagttg tttctgaagt aaaattagac
      181 aatagagcca atttcatttt ttatgcatgt gaatgtagag tgcttgaggt tattagttga
      241 aactgagtaa cctttccagg ctttcatctc tttcttttca aatttgaata tgaaaagcat
      301 attcaagtca gagaccatca ctttaatgac atttggcagt catttgattt attagatttt
      361 agaaa
//
LOCUS       KCOD01003095             611 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 343986pyr ultra-conserved element
            locus uce-1743, sequence.
ACCESSION   KCOD01003095
VERSION     KCOD01003095.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 611)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 611)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..611
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="343986pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>611
                     /note="ultra-conserved element locus uce-1743"
BASE COUNT          185 a          134 c          105 g          187 t
ORIGIN      
        1 tttgttttgc tgcaatgcag agtgaagagc agccccgacc cccctttaat tcctgaaagg
       61 tggaagcagc aaaggtaaag aggaggcaca gccaacctct ggtgaccaaa ggtgcgagct
      121 gttattttgt attccatact cttcaaagag caatataaac agaattattt atgcccagca
      181 aaatgttgct taattactta tgcaccactg tttgcttgta ttttaagctc tctctaccac
      241 ccacaggcag acgttaaaca gctgctaaaa gcgagcttta gtcttgcctg tttgaaatta
      301 gcatacttga gctttgaaaa aactttgttg ccaatttaca tatgcataga gactgatatt
      361 tagactcacc atatgatatg tccctcaaga gcttttctta ttgcctccat cctcaggtct
      421 caacctagag actgtaaatc tagcaggtga ttaattctat acccttgaga aactagcaat
      481 tagcacttgc aaccagtaaa aaattgtcat ttcaaacccc tgtttactat gcccatgtat
      541 tttctatgaa ctcacagtta actaaataga tggcaataga tttgcagtca ctcctgtctc
      601 tttatataaa a
//
LOCUS       KCOD01003096             692 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 344095pyr ultra-conserved element
            locus uce-7423, sequence.
ACCESSION   KCOD01003096
VERSION     KCOD01003096.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 692)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 692)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..692
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="344095pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>692
                     /note="ultra-conserved element locus uce-7423"
BASE COUNT          219 a          135 c          132 g          206 t
ORIGIN      
        1 gtgtaagcct ggtgcactaa ttgtgaatca ttttgagaag ctgctcattg acagcttcat
       61 gctgggaagt ctaaattact ctgtcccact tttctcagag ggagagaatc atttgtgtag
      121 gtctttctac agctcgaatc ccagcctcca caaagcaaga tgtgctaagt aaagcagcat
      181 ttaggagcct aatgaatgtg catacacaag tatgaagaca cacttgtaag ctggcgctgg
      241 taaggaagag tacattattc gatgtatcct ctttgaaaaa aaatcaataa aattcatata
      301 cagtatgctc attgtaaaac gacatgtgct gcatttaata ctcactgacg tgacacttaa
      361 caaacagtct tgaactgagc tctatttgca tttgatttct gtcacagctt gacaaaaaag
      421 tctgttgctt tcatctgctt tttcttttta acacttctaa ccaaagatgc ataggtgtac
      481 cttgcaggca gaataaaaag caaagtgccc tctaaagggg tctcaaaccc ttttcctaca
      541 tgtttataat gtaccccaat gttcaatcac tttctcagcc cagcagaaag aatagagaat
      601 tttgaatatt tggtgaattt ttaaatatac atggacaaaa gggcaggaaa tacagaattg
      661 tcccagcctt gaatgaggga acagtctttt ag
//
LOCUS       KCOD01003097             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 344207pyr ultra-conserved element
            locus uce-7296, sequence.
ACCESSION   KCOD01003097
VERSION     KCOD01003097.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="344207pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-7296"
BASE COUNT          202 a          134 c          120 g          178 t
ORIGIN      
        1 gaaaaactta tgtatgtaga ttcctctcac aagagcttca gggcataacc cagacagaga
       61 agccatcact tttccattct gcacccaggc tgctgacaaa agaattgtgc aaatgagcct
      121 ttaaatcctt aaatagtcac tacacaatgc atgaaagaat gcagcgcggg acaaagggca
      181 atattcacag tttatctcag ggtgatggat ctgaatcgac gcatgaacat gggtttgtta
      241 cgggatggag taggccgaaa acccctactg agaacccagt ggccacagtc tgtaatgcaa
      301 acagtcaggc taagtccttc acaattaggg taaatggaac tggccattat ctgaacttca
      361 acttgttctc atgattgata tgggaaatga aaagttgtat atatctctac aaagactgcg
      421 agttttcttc tcctgaccaa tgctaggaat cggagaaatt cctattctat atttccattt
      481 aataaaagta cttgcacttc catccacact gcaatggatg ttaccagttt ttttgttttt
      541 ctagaatttt agctatagat gagacaaagt tcattaaaca aagactatgc aatctatact
      601 gactgataac ctgacattct tcacaccatc agcc
//
LOCUS       KCOD01003098             492 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 344319pyr ultra-conserved element
            locus uce-7303, sequence.
ACCESSION   KCOD01003098
VERSION     KCOD01003098.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 492)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 492)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..492
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="344319pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>492
                     /note="ultra-conserved element locus uce-7303"
BASE COUNT          133 a           90 c          110 g          159 t
ORIGIN      
        1 tgataaggaa aagcataaaa cttcttacca aaagaatctt tacaccttca aaaaaggtaa
       61 gggctctgtg gagggacaga gcctcagtac cagctcattt tgttcaggga tggttttccc
      121 cctctcttta aaaaaaaaag tcattttatg cacaaggagc ttatttctta aacaaacact
      181 cgtgtttttg atttacacca cgggctgctc ctaaataatt tatggcgggt taaatttatt
      241 gcacagccct ggccggctgc aaattcgaat tgccaaataa ttagatttta gggcaatgct
      301 tataaattat ccgccgattt gtccggactt gtttgtcagt tgctttgtgc ttcaggtcat
      361 ctttggcatt tcgctgtttg tgttttaatt gctgatttac actttgacag atgagagttg
      421 atgcctccaa gatcggggag agggtgtggg ggggttgaaa agcagaagag cttttaaagc
      481 cttgtgattt tc
//
LOCUS       KCOD01003099             692 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 344430pyr ultra-conserved element
            locus uce-7941, sequence.
ACCESSION   KCOD01003099
VERSION     KCOD01003099.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 692)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 692)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..692
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="344430pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>692
                     /note="ultra-conserved element locus uce-7941"
BASE COUNT          205 a          130 c          125 g          232 t
ORIGIN      
        1 tttttattta agccaattca taatattttt cttgcatttt ctcgtgacac tgcattccga
       61 cttggtttcg aaagccttaa aattatgtgt gtgtgagagc ttaattttat agattatatg
      121 gtattcttca ctatgaagtt ttaaaagata caaaagaaaa accttgctca aatgtagaag
      181 ttatttttgc agtaacgtat gtcatgattt ttaaacattc aggcctttaa actttttttt
      241 tatagtgtat gttcttgcca atcccagcac agttctacaa agtaaaatat ttggcagtga
      301 attcatatta acagatggaa caagaaatta acacgttttt gcttcgctaa ttcacagttc
      361 ttttaatacg ctaattctaa atcacctgtt ctgactttga caggctacag acacctgttt
      421 ggggtaatat tccacagcta attattacat gagaaactca gtttccaaca aaagggtttc
      481 tgtgtgaaat tgtcatagtt agcaaattag taataccaac tttatacaaa aatagcttgc
      541 agaatttaca tgttcttaac cttgcctgca gaactgggag cagtggggtg cagggggccc
      601 cagcacacca gagagttggt gcctccatcc ctcatcctcc agagctggaa agttctaatt
      661 cctggtcctc gcagctgggt cagggatacc ag
//
LOCUS       KCOD01003100             396 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 344539pyr ultra-conserved element
            locus uce-2046, sequence.
ACCESSION   KCOD01003100
VERSION     KCOD01003100.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 396)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 396)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..396
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="344539pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>396
                     /note="ultra-conserved element locus uce-2046"
BASE COUNT          131 a           66 c           97 g          102 t
ORIGIN      
        1 ggtgtagaaa tgacttttca tgcactttcg agaggaaggg gaaggaaaga ggtcataggt
       61 atctggcagt acagggtgct gctatagagc atgtttatgg catttcacag agaagagcac
      121 cagaagggaa aagggaaaag cagagtgtta gatataagaa gaagtgatca caagcacaaa
      181 ggaatttata ttcaaatatt taagcattct tgaaaggatg ctcggagcag aaattccttt
      241 tctctgctcc ccatgtagaa atgactttaa cactcagcca gatgctaatg caaagtgact
      301 caagctattc ctcgcaagca tagctaaatt gccgttattt gttaagcgca ttgaattcag
      361 ctgtggatac agcagttggt tgcattcaga aagcat
//
LOCUS       KCOD01003101             464 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 344648pyr ultra-conserved element
            locus uce-207, sequence.
ACCESSION   KCOD01003101
VERSION     KCOD01003101.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 464)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 464)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..464
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="344648pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>464
                     /note="ultra-conserved element locus uce-207"
BASE COUNT          148 a           90 c           94 g          132 t
ORIGIN      
        1 aaaaatcaag gggagcattc tagtgcaaaa acttcactgg tgactccatt tactagtacc
       61 accttcattt tgtgaaacca ggagatttac aaggacaaga taagaggact ggcagatgtt
      121 ctttgactca ttcatttgaa gggaagggca ttcagaaatg gcattggcat aaaatgacat
      181 ttgaaataat ggcctgtgat tctgttggca cttttagtgt taagcaagtg atctgcaagg
      241 taaagtggat tcacagttag agtcagcacc agtgcacagg tcgcctgtaa aaatagaaga
      301 ttccattatt cttcaggctc cccagaggga acaaggtctc cagcatcatt accaggacta
      361 aatctgactt ttctacctcc cctaatttcc tcctagtaat tataggtcaa gcactctttt
      421 gtaaaatata aaacctttgt tcttatcaaa aatgaatagc ggag
//
LOCUS       KCOD01003102             894 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 344761pyr ultra-conserved element
            locus uce-1747, sequence.
ACCESSION   KCOD01003102
VERSION     KCOD01003102.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 894)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 894)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..894
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="344761pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>894
                     /note="ultra-conserved element locus uce-1747"
BASE COUNT          282 a          173 c          179 g          260 t
ORIGIN      
        1 acaaggagga acaacttagt tcagaattgt aactaaaaag aacacgctta ttaacaatgt
       61 actaatcatt cctttcaaaa ggcactaaaa acacaaaagg gtaaaatgtc cagaaattaa
      121 gttatgtgac agagtgggct gcagtttctc agaagtttaa tctgtactgc tagtcacaga
      181 tgttggcctt agtattttct tgcagtgttg tttttgattg aaaactttgt gaatgtttgt
      241 gatattgctg agagcctatt ggcagatgag catctcttgc tatagtctcc atcattattt
      301 gcctgtcttg tctattaacg agcactatca tcccatcgta agatgacagc tgcaacacgt
      361 actcaggcgc aataaacagc taaatgaggc gcacagcaat ttcacttgtc accagagccc
      421 tcggcacgac tggctgcaca gcttgatgca taaattcatg aggctgttgc atatgatgga
      481 gtatgcctgg ctgaaagagg tgatggatag cagggcagct aaaaatggcc atcaccttga
      541 ctctgtcagg acatttttta aaagtacccc atcagctctc ttgcattctt ttatgtacac
      601 tatccccaag ctataggctt tcaaaagtac tgatacttgc tgacggtttt tggttctaaa
      661 ctcaagtttc ttcttaggtt caatggatgc aatatatgct actaatgtgt agggtgaaat
      721 ggtcctataa taattgttca ttcaacacac agtggagtca taaggttaaa cactaacaac
      781 agaaacagag tatgtctaaa atgctggtaa aatgcataca tgcacacgga gacatatatg
      841 acagcaaaat gtgcgaagcc tcatgcaaaa gtacattcaa ttacaaatat gcat
//
LOCUS       KCOD01003103             743 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 344871pyr ultra-conserved element
            locus uce-1892, sequence.
ACCESSION   KCOD01003103
VERSION     KCOD01003103.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 743)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 743)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..743
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="344871pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>743
                     /note="ultra-conserved element locus uce-1892"
BASE COUNT          240 a          108 c          142 g          253 t
ORIGIN      
        1 tataaatttc aggcaaaagt tttgaagtat tatgtgagtt tctaagaaat attttccacc
       61 attttaagtg ttcagttaaa acacagcttt ttaaaatata aaaaaaattg atatgttgta
      121 tgatttacag tcttggaaaa aataacatag tcataactct gcagtttttg tgatgcatga
      181 agatcagatt ttttaatgtt ggttaatgct ttactaatta aagtgtgcat gttaattaaa
      241 gcagaggcta atgttaatta cctatattaa tggaatctca tgtagcacct gcctgaagca
      301 atgggttcaa ttttcaaaat atctcaatta agactgaaac ttttgatttg catctagtag
      361 ggtttcaatt aactgcattg caaacttaaa taacacactt aaagggataa tatcaccaat
      421 cacatccagc acagtggaat tggtcggttc aattattgac tacggctgtg agagctttca
      481 cagttggtag gtaagtacta tggtattggc aagtgattat tgtctagggc tgtcatcact
      541 tctgtggctg ttgcaagaga gatgttaaat tgctgtactt gggtctcact gcaattccat
      601 tgtcgaggga gacagaaata gaatgatgtt ttctcacatc cagcatttaa tggtgaagat
      661 tcagcttgtt cctttgaaat aaatgaccac tattccatga catggtaagg cattttatca
      721 aatgggaaaa cagcatttgt gat
//
LOCUS       KCOD01003104             549 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 344978pyr ultra-conserved element
            locus uce-5774, sequence.
ACCESSION   KCOD01003104
VERSION     KCOD01003104.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 549)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 549)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..549
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="344978pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>549
                     /note="ultra-conserved element locus uce-5774"
BASE COUNT          163 a          110 c          116 g          160 t
ORIGIN      
        1 ctgtatgaaa atgagctgtt ctgctgtagg agatgaacta acactgagct cctttctcat
       61 tcacttcaag agcagtgatc aatgtcaatt tggatatctg agccatagca ctttaggttt
      121 tattgtacca aaatttctta aaacccattg actcagcgtt ttcagcatgc atcacatctg
      181 attgtttctt tgcttttcaa taaggtttac aaggccagaa catctaggaa gcagtgccaa
      241 aatcaaatgt agtggttgcc atagctacca agaatctacc aaacaactca ctatgaagaa
      301 gttacccatt gtggcctgtt ttcatctcaa agtaagttca cgggtggcca gcagagcaga
      361 ggatgtgatt gagaggatga gctgaattcc tggacatgtc ttttggcttt cactgtaaac
      421 ttttactaat ataaacttgc ccagctagag ttaagataga ttatctctga ggtagctttg
      481 cagtgtgtct gggggaaaac ttgaatctag agacagggct ggtccaaaac ctgaaccagc
      541 acagaaacc
//
LOCUS       KCOD01003105             375 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 345084pyr ultra-conserved element
            locus uce-3003, sequence.
ACCESSION   KCOD01003105
VERSION     KCOD01003105.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 375)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 375)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..375
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="345084pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>375
                     /note="ultra-conserved element locus uce-3003"
BASE COUNT          118 a           71 c           60 g          126 t
ORIGIN      
        1 ttacgctttg cttttaacaa gtaaacaagt gtacaaatta attcagagag ctgtaatttt
       61 gaaaattttc tatgtttaat gtgcactgca gttaaactac tttttctgta caaattaatt
      121 tactgcatca gtgatcgatg tttatgttta ggcaatttta tttctcagta tggtaaaatt
      181 agacctaata gttgcaacct gttatgtcca atctgtcact gaaattcaaa ttgccctttt
      241 tcctattatt caaggagtaa tttggaggaa ttaaagccat ctaaaaccag aagacaaaca
      301 attctctgta aggactcaat agcctgtgtc atcaacctgc tctagaaagc agtggccctg
      361 cctcagcaca gccac
//
LOCUS       KCOD01003106             663 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 345190pyr ultra-conserved element
            locus uce-2595, sequence.
ACCESSION   KCOD01003106
VERSION     KCOD01003106.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 663)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 663)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="345190pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>663
                     /note="ultra-conserved element locus uce-2595"
BASE COUNT          209 a          155 c          145 g          154 t
ORIGIN      
        1 caaccactgc ttttcttgtt cccagagatt ttagcattag aggtatagca agcaataccg
       61 ggcattttcc aagaatggat tttgctccca gaggatggca agcagaaagc agccctacaa
      121 attttgcatt cacataaata gacgcaggat tgcaacagat ggggtctgtt taggtttggt
      181 taacagcacg aggaagggtt ctcaactaaa ctgcattaga tgatccatca gcaagagggt
      241 tcagtcgaaa ggactgaaag ggtcccattc atttacagct acagccatcc aagttaaagc
      301 ctctctcgcc tgacagcagc aagtggcaaa cttagggaag caatgggtca tgggaaaggt
      361 cccattagat cagtgggagc acacactaaa caaatacagt cacatggatg cacacattta
      421 aatactgccc aagggaatat gtggacatat gttcagtgta gcctctaggc ctcaagaaag
      481 ctatgttaaa aaaaaagaat tccatcaatc agtcctaggc cctgtgaagt atgaagatga
      541 aaactgcaaa ggaaacatgt gctcagctct ctccaccagc tgccccatta agcagcactg
      601 ctctgcaata ctgccctgga gaccctgcaa cttcaattcc agtctccctt taagcccaga
      661 tga
//
LOCUS       KCOD01003107             281 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 345293pyr ultra-conserved element
            locus uce-4445, sequence.
ACCESSION   KCOD01003107
VERSION     KCOD01003107.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 281)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 281)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..281
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="345293pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>281
                     /note="ultra-conserved element locus uce-4445"
BASE COUNT           89 a           38 c           63 g           91 t
ORIGIN      
        1 attcaaattc tagtgtttac ttgtgattgt ttattttaca tataatagag tggctggatg
       61 atgaagtata ttagttcttt aataatttat agaaatgctt tgatgttgca gtaattacat
      121 taaaggtcac atatcaaagg taatttggtt gagcagctgt gatggtttct cagaagcaat
      181 caatattgct gtccatggcg ctgatttcac caaggggact gccagattaa aggaggctta
      241 ttaccagaca gacagacacg ggggaaatca agaacagatt g
//
LOCUS       KCOD01003108             709 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 345398pyr ultra-conserved element
            locus uce-5290, sequence.
ACCESSION   KCOD01003108
VERSION     KCOD01003108.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 709)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 709)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="345398pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>709
                     /note="ultra-conserved element locus uce-5290"
BASE COUNT          229 a          150 c          138 g          192 t
ORIGIN      
        1 aaccaaggta agagccatat gtacaaaaca aatgaagtct tcctcacctt tgtcttgaga
       61 aaacgaaagg gatttcagca gcattgtctt taatccaatt tactttgggt ttaatctcca
      121 aaacaagact ggcctgctaa ttcccaatta taatggcaca tgtaatcaga gtcctcatta
      181 acaaagactg actatattgt ctattaggaa tggaaatctg aaatgcaaat tcagcaaatc
      241 aaaacgttaa atgagctcta cccagagctc ctgccagggc agcgcatgct ggccgacacc
      301 tgccctgaat tctccctcca gctgaatgtt tcattctgtt ccagtctttg cctcctaatt
      361 gacctgctta tgatctctgc tacaattaac atatgcttat tagtaatggc tggttaaaga
      421 tttcaaactg ccgcagttta caaagtctaa tagagatggc acaccacagg aaagatgaga
      481 ccactgtttt cctcatcagc agtgtcatag tggtttggtt tcatgtgatt caaatgagat
      541 aatttttcac atcatctgat gtctgcaaac ccattctaat tgaaactggg aatctgcaca
      601 caaagtggct taaggctcct ggtgcactaa atgaaaatca gttagggaat agaaccctgt
      661 aaccgcagta gcagagatgg gaaaaaaaga aggggacaag gaaacaaag
//
LOCUS       KCOD01003109             589 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 345511pyr ultra-conserved element
            locus uce-6628, sequence.
ACCESSION   KCOD01003109
VERSION     KCOD01003109.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 589)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 589)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..589
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="345511pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>589
                     /note="ultra-conserved element locus uce-6628"
BASE COUNT          229 a          103 c           92 g          165 t
ORIGIN      
        1 cttgaagttc ttggttgggc ataaacagaa gtcaaaagat aaacaacaca aaccatgatc
       61 aattagacca acaactaaaa agaacagtag ccacatcgat ataatttcac tttgatttag
      121 ggtgctatca aaagtttcaa cagactatag ctccagactt tatctttctt ggaagacact
      181 acaatagaag ccacagtaga gactgccttg tcacaagagg tacaaataca gatggagaaa
      241 taaaaggaca aatctagttg tctaaaagac aattcactgt acacatttta tttacagttt
      301 tgtacactgt cttagtatga atgggaccgc ttttctactt gagccatttt aaccaaagca
      361 aaataaccta agtaatacaa agtgttaaaa tacagcataa gatacctagt aaggaatgta
      421 aattatggtg ttacattttt atgttcagga aatcacacaa aaagatcact gatttgactg
      481 aaatgcataa gtctgtagca aagctctgat gttacaaaaa aaccaaaaaa ttaccaaaga
      541 atgcacaaaa ttaatgttta ttccaccttt gtcatattcc cagattgtt
//
LOCUS       KCOD01003110             383 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 345617pyr ultra-conserved element
            locus uce-3680, sequence.
ACCESSION   KCOD01003110
VERSION     KCOD01003110.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 383)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 383)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..383
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="345617pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>383
                     /note="ultra-conserved element locus uce-3680"
BASE COUNT           99 a          107 c           77 g          100 t
ORIGIN      
        1 ttttattcag ttgatcctct gaattcctta cgctcgttct cactccttcc ctggaactgt
       61 gccccttgca caaatggtca acagccaagc agctgtgtct tgtctctgtt aggagccagg
      121 gagattctcc ttgacctgaa gagcagcagc agctccctgt gctcagctcg gctgtgcaaa
      181 tgccaagagc accagccagc tttgcatgtc ctaactactg tgtgatgctt cctcttataa
      241 tcagtccgag catcactgct tctcccaatt gccccctgca cttaattgac caatagagct
      301 agacatatgg aggatcgaat cacaaaccca aatcagcagt tgtcagagga gattaattca
      361 aacaggaagc tacaaaacac atg
//
LOCUS       KCOD01003111             305 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 345723pyr ultra-conserved element
            locus uce-4741, sequence.
ACCESSION   KCOD01003111
VERSION     KCOD01003111.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 305)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 305)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="345723pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>305
                     /note="ultra-conserved element locus uce-4741"
BASE COUNT          105 a           49 c           52 g           99 t
ORIGIN      
        1 cttctaaaat acctgtttgc attttaggtt ggaaatgatt ttaaaaacca ccgcaaacaa
       61 agtatcgtga aaatagcact gacatttgcc catagtttcc atctgattaa gtggaagtga
      121 cacgagtaga ttagaatgag actaagacaa ttcacattgc aattgtgtta gtttaacttt
      181 aacaatcttt taacatgctt gtttaaatgt ggctgacata ccataattac aaatctacaa
      241 gccttgatta tagaatttta catcatgaac ctatggggaa agtgtattga gtgaagcaat
      301 tcctt
//
LOCUS       KCOD01003112             768 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 345835pyr ultra-conserved element
            locus uce-608, sequence.
ACCESSION   KCOD01003112
VERSION     KCOD01003112.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 768)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 768)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..768
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="345835pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>768
                     /note="ultra-conserved element locus uce-608"
BASE COUNT          230 a          127 c          170 g          241 t
ORIGIN      
        1 tttaagtctt catcgtgtta cagagaataa tgcagctcag acattttgct tctctgtggt
       61 attttacaca aatcaaccag agtttattta ttccttttaa gtgccttatc cagcatgcgc
      121 atccctttgc tattggatga ttttgaatta gctttacaaa gattacatgg atagacacag
      181 cattgtggta gttaatagaa acctgtgcag tgaggtctgt gggctgcaag atcactaaca
      241 gtgccaatga cagtgaagta tggccttatc gaaaggagaa ttcataagag gctgccctgg
      301 gacactgcag cactgtcctt ctgtgtatcc tgacaatgtt atctgtccgc tcagtacgga
      361 gtatcaaatg tctgtcacga gtacagaaat taatttaatg tcacctgaag acatgcaatt
      421 aatcttttag aggttttcat aataccttta cagaaagagt tgccagtttg gtggatttgg
      481 attttggggt ttaacagaag ataaggaaaa ttaatttttc atcagggtta atacaagcta
      541 gcagggccac aaaggctgag aaaaatggtt tgggaatttg tcaagtgttg tcactctaga
      601 ataatgctgc ttaacgtctg ataggtgtaa tcaagagttg agatttctat agagggggat
      661 taatcaattt gctcactaca gaatgcaagt tggtgatacc attccttcat ggggtttaag
      721 aatgaaaata agatttgatc tgtcaaattg caagcagctc tgacagta
//
LOCUS       KCOD01003113             626 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 345946pyr ultra-conserved element
            locus uce-1346, sequence.
ACCESSION   KCOD01003113
VERSION     KCOD01003113.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 626)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 626)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..626
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="345946pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>626
                     /note="ultra-conserved element locus uce-1346"
BASE COUNT          167 a          138 c          147 g          174 t
ORIGIN      
        1 cggttcccct ggcttgtctg gcaatcatgt tagtgattat atgggtaatg aaacacgtgc
       61 tctttttgtc tgtggctctg attaatctgc tttctattta gccgtgattt atggtgctca
      121 actgttgagg tgagcgctgg cccatcagtt ccgtggccta ttacgggcgc cgcggcagcg
      181 aaatgcctgc gaggcttgaa ctgtttcttg acagccaggc ttcccgctac attccctcca
      241 atctgttttg cttcctggtg tgacctttca tacagtaaaa tacattagtt gaatagcaca
      301 gtctcattaa aagagtgaat taaccgaaga gtctttttaa ctaaatgaca gccaaaggac
      361 tgagtgctaa tagccacggg cagttagaaa cttaactcat gaatcaggct gttaatactg
      421 ctcgctgcct gaagcgctaa gggcaccaca ctctctgctt gctctcataa gaagaaaagc
      481 tcattacttt cctcctgatg ggagagaaag agtgagcgag caataataaa gcttgaattt
      541 ttcaatactg ttaaaaatgg ggctgacaga ttgccgacaa taggagcaac gggctagaca
      601 ctgcgaagag agccactgaa ttagca
//
LOCUS       KCOD01003114             674 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 346055pyr ultra-conserved element
            locus uce-7949, sequence.
ACCESSION   KCOD01003114
VERSION     KCOD01003114.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 674)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="346055pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>674
                     /note="ultra-conserved element locus uce-7949"
BASE COUNT          188 a          114 c          115 g          257 t
ORIGIN      
        1 gtcagtttta aaccaaagcc cacagaaaaa atgaaatatt tttcattatt agattcactg
       61 acatttttat aagagatatg ctgcagtgat atctagattt attttgctgt tattgcaggg
      121 agaaaagaac ccagaactat gcttcatatt atgcataatg tagaaaattg ccaggctttt
      181 ataaaatatg tttatcattt cttaatgtga tttatttgcc ttgtgtttag actattgcat
      241 ggtaaagttt attttgtgca tatacttttt attttactaa tatattacaa gccatatctc
      301 aatgacccct gtgcattttt catgctgtct tactcccaat ggcctctgtg catgtaagta
      361 acctgtcaag tgacaatgcc tctttatttg cttcttactg tttcctttca agaactcctt
      421 ttctttctta gctagtaaca cagaagcatt gaagttcagt cgtgtgccct gtattcctcc
      481 tatcgtaatc atttttcttt tgcatttgag aacattagtt aaatccatgt agactgaggc
      541 acatcttctc tttgtgatga aggatatgtg tcatttctga tgtttgttcc tgttgtttgt
      601 atctaacaca acgtggtttt gttcaagaag aaaaaaaaga cacgtgcaga cttgggtggt
      661 tagaatggta aagc
//
LOCUS       KCOD01003115             456 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 346165pyr ultra-conserved element
            locus uce-6249, sequence.
ACCESSION   KCOD01003115
VERSION     KCOD01003115.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 456)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 456)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..456
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="346165pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>456
                     /note="ultra-conserved element locus uce-6249"
BASE COUNT          126 a          106 c           89 g          135 t
ORIGIN      
        1 ttttcccccc ttccctttca ttcataaacc tggtggctat agacgcagct tgaatattga
       61 cgtctcttcc cccaactgct cctccgttaa cccaattaca gaattcatca agaactgtgt
      121 tgaattatct ctttccatac agtatcagca ttagcctaat taaaagctat aatgtctgat
      181 ataatgatta aatcgttagc tctgctgtag ggaagcaata ttttgttttc ccttcaatta
      241 gaagctgatt gaggttttca gagcaggtca gctgtgaaat ttgaattata tgtgtgagta
      301 ccgttcacag ggtgagcccc tactcgaaag ctccagagat tctccatacg cttttaccca
      361 ccaagctgag aaaagacaac aaaacacaga gcccgtagct gatttgggac tggggctgta
      421 ggatggcaca gaacagttgt ttcaattcag gcgccc
//
LOCUS       KCOD01003116             662 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 346277pyr ultra-conserved element
            locus uce-5924, sequence.
ACCESSION   KCOD01003116
VERSION     KCOD01003116.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 662)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 662)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..662
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="346277pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>662
                     /note="ultra-conserved element locus uce-5924"
BASE COUNT          200 a          156 c          127 g          179 t
ORIGIN      
        1 actgtgccag aaggccttta cagcagcgtt tcaagcactt ccatgcttcc actgctgttt
       61 tcttgaagac aagggaagca aagctacagg gctcaagaga gaagaaaaac caactcttct
      121 tttaactaca tctgccataa cactctgcac atactgtaag agaaccgtgc aaacggtttc
      181 tgtcatctac tgtgtctttg gtaaaggttt gggaatagca cttgtccctg tagaccttac
      241 ctcatattat gatcatctac tttattgtgt aacggatctt ttagttacct ccccgcccat
      301 ccatgtacac agaagggcca tgtacatggc gaagctagag actgtaacct gaagattggg
      361 gacaaattaa agaaaaaaat gtgattcaac agaattacat taagtcaggg aattaattgg
      421 agtcaagcta tgcctgattg cttccaggat taacttcagc agagtattgt acattactga
      481 attttaccag ttaacctact cctcctaccc cccaccggtg gagccttatc tacaatcgtt
      541 aatattaagc aaataaggct tcaaataagt atcaaagtct caccttcaga cgaccactgg
      601 tctttcggca cttctgcaac cagacagtgg tagaaagggt gctcgccaaa accatcctca
      661 ag
//
LOCUS       KCOD01003117             558 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 346386pyr ultra-conserved element
            locus uce-4049, sequence.
ACCESSION   KCOD01003117
VERSION     KCOD01003117.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 558)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 558)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="346386pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>558
                     /note="ultra-conserved element locus uce-4049"
BASE COUNT          177 a          109 c          116 g          156 t
ORIGIN      
        1 ttttaaaaca tcacactgaa caccccaaac agtcacagcc tatgttcccc cagcatttaa
       61 tcagcagtcc ttttagctga tagagtccta agtgatactt aaggccattc gagatatgct
      121 cgctaaatgg acctaacagt accagtgtat tttatgttag caagtcatga tagaaaagtg
      181 cttgaagttc agggggcatt tgtctccttt ctcacaaatt catttaagta ccagtcttgc
      241 catagcttta actggggcag acaaccatac aaatgacttg agataaaatg aaaataatgg
      301 actgagctag gtgccggggg tggtagttac actgcatgca catcaataag cattgagtgt
      361 tattctatgc taatgtaagc ctgatggatc agctttcgct tttagcctag aggaccatta
      421 agcactagaa gctgggtcaa actgatatag taaggcagac gtaccctaac agttggcaac
      481 agtagttaac aagcagtaat ttgctatgtg tgagactaat gttgtttaaa atcttcatga
      541 tcagaacaaa gatcagag
//
LOCUS       KCOD01003118             956 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 346497pyr ultra-conserved element
            locus uce-2114, sequence.
ACCESSION   KCOD01003118
VERSION     KCOD01003118.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 956)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 956)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..956
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="346497pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>956
                     /note="ultra-conserved element locus uce-2114"
BASE COUNT          295 a          181 c          180 g          300 t
ORIGIN      
        1 gccaaagact gtctcagttt atgaattagc atttaaaact actgtaggtt atctaacaag
       61 cattcagatt caatagtact tttgacagca gtaagtaaag agccttttaa catcttgaac
      121 acatgtgctt gaaaaaagta gttgcatcaa agcagttcaa agactgaaga caaaaaccag
      181 ttaaaatcca gtttactgtg agatgatttt agtgtggtgt aaacaacctt tcacgacatc
      241 ccatgggaaa cgttgtaagg ctatgttcaa aatgaatcag gcatatttat aaagatcatg
      301 aagtggtcaa atgcatttgc atttttggca gatccactcc acgggtacta cttgctacag
      361 tctgtagaaa tctcaaatct cacatcaggg ctgcctatag tgctttatta tttattacat
      421 gttatgctaa gtacctgcga aaggggacat tccttggcca atgaactctg gttcatatcc
      481 ttcagtaagt ccttcagagc atttcttact gttgtgtgag accattgttc aggaggcaag
      541 tcttctagtt tagggcaact atttgaaaca cagattagaa aagggattat tacaagattg
      601 catcctgctg cagaacattc ctttaagaca gacagatttc attttgcgca tcaagcagat
      661 gcatctggag attgctctcg gtctcctgat tgttccgatt agttaattac tttatacaac
      721 acatctgctg tattgatgca tgaattatac atcagctgca tgtggcgact attttttcat
      781 gttacttcta ccttcctgct ctgatgcgct tggtaaaaca atttaaggtg taatgctttc
      841 tcacgactga tcatgaaaag cattaatata ttaacctgtt gccgtgaaat ttaagaaccc
      901 agacagcaac aataagtgtg agcaagtcat tcttttacaa aatgcacaca gatggt
//
LOCUS       KCOD01003119             611 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 346609pyr ultra-conserved element
            locus uce-6191, sequence.
ACCESSION   KCOD01003119
VERSION     KCOD01003119.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 611)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 611)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..611
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="346609pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>611
                     /note="ultra-conserved element locus uce-6191"
BASE COUNT          175 a          122 c          131 g          183 t
ORIGIN      
        1 ctttaacttg aagtggacag ttcatttatg caatatctgg cttcagataa tgaaaggcac
       61 ctgcaaaaaa gcaaaagaag ctttttaagt catgctgtga caacctcaca gcatggggcc
      121 atgccaacta caggttgaca ttgtcatatt taatactgat atatcaaagg aaagggacta
      181 atatttttat tcctaggaca agtttgacaa aactctatgt atcttggatt atatactgta
      241 atgattcttg agctgacctc attaagaaca tgtgtttcta atagtggaat gccagcggtt
      301 atttcatttt ggacaaccct tatgttttac ctaatggcaa tcaggtttca tgtctcaaca
      361 attaataaca tcaagatgtt gttgacatca cttaagaaaa taattatgca gcagaaatcc
      421 tgcttgaaca atcagctatc tctttgggga gaagtagcag tgagccatta ggatctgtct
      481 cagaactccc tcccttccca ctgtactcac tttgtccata ctggccgtac tggtagcccg
      541 tgacggggtc catgctgtat cccgtggtgc tgtaggtcgg cgggcagtag gactgggatg
      601 taggcaggct g
//
LOCUS       KCOD01003120             777 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 346715pyr ultra-conserved element
            locus uce-2164, sequence.
ACCESSION   KCOD01003120
VERSION     KCOD01003120.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 777)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 777)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..777
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="346715pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>777
                     /note="ultra-conserved element locus uce-2164"
BASE COUNT          219 a          172 c          181 g          205 t
ORIGIN      
        1 agtgtgcttc attagctaat tttgactttg gacctcccac gatgcccagg gttaggtaat
       61 aacaattagt gtcagctgtg ggtcagggat gtcacgatgg tatatcatta aaatgtgaca
      121 ctgccaaaaa ctgccccaac tcccctgtcc ttagaaaagg agcccttcga ttttgggttg
      181 cacagtgcca tagcgtggat gaattgttca ttttgaggga gcagccagcc gcagatccgg
      241 acctccacag tgcagtgatg ggctggcggg cacaaagggg gagttctgta gcgcagtgaa
      301 taatgggaag cccctttcat cggcaggact aaccttttgg cagccaccag cacactctat
      361 tctgatctgc tgattgggga ggacaataca ctgaagctta ctttgaatga atgctgccac
      421 caacagtgtc cccattcagg ggctttggga accatctttg gccattgtcc cccagcactc
      481 cctcagacag caggaaaagg gaaagtgaga gaagctatag ggggaaaagt acttcttttc
      541 ttggctttaa tctctcttta aagcttcata gatatacatt tccagctgag ctatgcagtg
      601 tcagataaat acagaagaga gaggtttcaa gctgagcttt caaatcccct tatctgcatg
      661 aactaataat gcagatttag tgctgttaaa aacagagact gataagtctt ttcctttaaa
      721 gcctttaaac tgctaaagat catttaacag tgaagcagtt caaacccaat gaacaat
//
LOCUS       KCOD01003121             618 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 346825pyr ultra-conserved element
            locus uce-4927, sequence.
ACCESSION   KCOD01003121
VERSION     KCOD01003121.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 618)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 618)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="346825pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>618
                     /note="ultra-conserved element locus uce-4927"
BASE COUNT          210 a          119 c          117 g          172 t
ORIGIN      
        1 aaacagaagc aaacaaattc tcagagatca gctgttctaa ggagagaaac ctctaaaaac
       61 ttgctcaaaa aattattatt ccttgagaga tatcctcaga acaaactagt tcattaaagt
      121 catatcagca cttgtaattg gcccttgttg gccaatagaa ggagacattt gcaacttttc
      181 ccaggaaatt atattctaaa tccttcataa ggtggacctt gtccttttct gaggaaactt
      241 gatagcagtc tttagtattc actggcataa ttaggactgc agttaatttc attaaattct
      301 cttgctgcta aatgaagcag attatgagac atcttttatt gcaaggcatg aaattacagc
      361 ctgtcagctg ccaatggtag agtaaaacta atgaattaca gggtaaataa caccagaatt
      421 aaccagccaa tttaacatag cagagaacaa agtcattttt acttgggcca ccactgctgg
      481 gatccctttc agcacaggga accaacctca aatctatttc ttgggcagca gtgttaaaaa
      541 accaacacag ccaagaagtt gggagaaaat tggaaggcat cgccaaattg tggtatgtcc
      601 aagtagtttg tgctgatg
//
LOCUS       KCOD01003122             760 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 346936pyr ultra-conserved element
            locus uce-7979, sequence.
ACCESSION   KCOD01003122
VERSION     KCOD01003122.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 760)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 760)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..760
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="346936pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>760
                     /note="ultra-conserved element locus uce-7979"
BASE COUNT          202 a          180 c          191 g          187 t
ORIGIN      
        1 cttctgcttc ttaatcagct gctggtattc ccatgcaggt gatggtgtcg gagcgtgcgt
       61 atccagcgct cctgtctgat aaagaattta taagggagca gatacagccc aaagaaaata
      121 tttataatgc ggagttttct gatgctgggt taatcaagat tatctccaat ggcagcgaga
      181 gatttgattg acatatttaa cctctatttc tcactcttgt tctgcccttt tcccgaccta
      241 aggccaacaa agtaatttgg aagtcgaact tcacctaagt gttaatgatg aagctctggg
      301 aagtttctcc cgtaatgagg caccatgcag gaggaagtac cagttgggat tcctattgca
      361 gccatatgtg aggccaatgt tgcatgaatt aacatacggt gggtcaagtt aacatatgta
      421 cagtgaaaaa tgactaatga cttatcacac tgatgttatt tttggacctt cttgtacgca
      481 acctctccga ggcgaacaag ttttatgcct cgactgtccc ggttccccgg gaagaaagag
      541 gaaagtgaaa ccatatgttt agcaaaggga ggaaagcgag ccagagacgc aacgctggaa
      601 tatcagcatg gggcagcgcc atcctgcagc acgcagccaa aggggatgaa tgcccagcaa
      661 tgtccccccg ccgccaggca gccgaggcag cggcgtgcct ggatgacaga tgctgccgga
      721 gccatcccac aggctgcatt cagtgccctc ggtgccactc
//
LOCUS       KCOD01003123             415 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 347047pyr ultra-conserved element
            locus uce-4450, sequence.
ACCESSION   KCOD01003123
VERSION     KCOD01003123.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 415)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 415)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..415
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="347047pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>415
                     /note="ultra-conserved element locus uce-4450"
BASE COUNT          119 a           85 c           83 g          128 t
ORIGIN      
        1 tgtgaattaa aatgtgactt ccttcaaaag gaaatcaaaa ctaatcttct cctaggtccc
       61 agtttatgtg gcacagacca gcctgcaata atcaaaccag agccatttag tgtatagtct
      121 agtcttgctg tgactaatag gatgattggt tgtatagctt ctttatggtt gttcattata
      181 tcacccttac ataaagtaat ttaatttcag tgggataatt agggtatttc taatctaact
      241 gatagtctga atgaaatgag attctcagag ggagatttgt gtaccaggag attggtgacc
      301 tccggcccca attttcacac aatgtattaa gctgacagcc ttacttccaa gccctgctgc
      361 actggcacct caccacttgt gcagatgtta cagacagcag ctctgaatga ggctc
//
LOCUS       KCOD01003124             545 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 347156pyr ultra-conserved element
            locus uce-5107, sequence.
ACCESSION   KCOD01003124
VERSION     KCOD01003124.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 545)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 545)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..545
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="347156pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>545
                     /note="ultra-conserved element locus uce-5107"
BASE COUNT          192 a           96 c          108 g          149 t
ORIGIN      
        1 tgcccaacct cagcatcacc aagctcccag ttctgccaaa ctgcacatta gcaagtgagg
       61 aagaaatcca cagaagaatt tccagaagga caaaaaacct atcaggtgtg tcaaatctct
      121 gacattcaga aaccatttgg ggaaagcagc acacgctgac ttaagcacta aagtatggat
      181 gctttaatta atccggggtg aatttaattg ctttagttaa gtggaaatcg ggttaaaaat
      241 gatgcagagc atgctggggt gtgttaaaaa catgacatat gagttggatg aatcgataaa
      301 ttaaaactgc acagatgttt taattaaacc caggaaactt aacaaagatc actagagact
      361 tttaagccta tgattaattc aagtcattta aaatacctgt agagatatgg ggttgcctcc
      421 attttgggag ttacagaagt tctcaatcga taagtactta agctgttcta caaaaagaat
      481 ggcatgattt ttatagaagt gactggacag cattaactgc acaattaata tttacactct
      541 tctga
//
LOCUS       KCOD01003125             405 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 347262pyr ultra-conserved element
            locus uce-3383, sequence.
ACCESSION   KCOD01003125
VERSION     KCOD01003125.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 405)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 405)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..405
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="347262pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>405
                     /note="ultra-conserved element locus uce-3383"
BASE COUNT          137 a           71 c           71 g          126 t
ORIGIN      
        1 aaaaatgtga aaattaaaaa ggagggaggt ctcatttata ttgggatcag agtattgttg
       61 aattttccaa ttttttttca taaataacag tatgactcca tctgtcaaag tggaaaagat
      121 tcatccaaag atagatggtg cccaactgaa agctgctgtt ggtccaactt gttctactac
      181 tgtgagttcc tcaataaaga ctggccttaa ttgtccctca ataccaaagc cacccttgcc
      241 ttcccctgga cagatactga atggtaaagg tcttctctct gtgcctccat ttttggaaaa
      301 gaaacctgaa gaaaatacga ataataggaa atttttacat aaaagattgt caggtaacta
      361 tattcctttt agtagaatat agaaataagt tcaatactgt aactt
//
LOCUS       KCOD01003126             834 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 347482pyr ultra-conserved element
            locus uce-772, sequence.
ACCESSION   KCOD01003126
VERSION     KCOD01003126.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 834)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 834)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..834
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="347482pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>834
                     /note="ultra-conserved element locus uce-772"
BASE COUNT          264 a          157 c          148 g          265 t
ORIGIN      
        1 taaatgaaat cactgctgaa tatggcctca caaggcaatt taaaccgttc ttgtctatac
       61 ccccttgtca ttaactggta aatcagtaat ttatttccta ttagaattta tatagtttgc
      121 agcaattaag aagaaaagca taattgctga caaacccagg gcactattta aatcacttcc
      181 ttgttgacaa catatttctc cttcctaaaa ctgaatgtca ctgaaatctg atttgtacag
      241 aacccttgtg gactcatcat tcaaatgtac tgcacctgtc acctgtgtgc tagcattctg
      301 ctaaggatca atttacataa cctcatttaa tggttcataa atcataccca ttaagcccag
      361 ctaacaggaa ccaagggttc taatttatgc tgcctttcat agcagaaaat tgggaggctg
      421 gagcctgtgg ataaagaacc caggtcttgc ctttgattgt tgattgtgat ggtaaatgta
      481 tggatgatga gaacagattt tcactttatt gatttcctgc caaagcacag catgctttat
      541 tgtgaaaggg ggccttttgg cagcagtgct aaaagtggca gttgtttagg agccctttgc
      601 caagatgaca tctaagacaa taccgagtgg taaatactaa aataatatca agctgaaatg
      661 ttaattttta aaaagaaacg tccccgaaaa aatcaatgat gttttctacc ccagagcacc
      721 tcgctaataa acatgaagcc aggtgattac tgtgggtttt tctaaaatct atttttctta
      781 aattctgtat tctattataa attattcatg gtatttcagt caaagtaatg caga
//
LOCUS       KCOD01003127             437 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 347593pyr ultra-conserved element
            locus uce-4140, sequence.
ACCESSION   KCOD01003127
VERSION     KCOD01003127.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 437)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 437)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..437
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="347593pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>437
                     /note="ultra-conserved element locus uce-4140"
BASE COUNT          138 a           84 c           74 g          141 t
ORIGIN      
        1 tcttttctta gcaggactta tgcctggaag tcctgtgatg taaaatttga ttgctacaat
       61 taagggacaa acatcacact gttgtaagat atatgatgca tcccatcatc ttcgcttgtt
      121 acacattaat atcagctgtg atcaaatgag tcgactgaca ttcaaatgta atggttaaaa
      181 cttctgcacc acagatatac aacttcaacc ttttgaatgc tgccattcca tatatggact
      241 ttatccacat tttaatgagg ctttaaaatc tccgagataa agctagtatt ttatgtagaa
      301 ctgcctgctt tttatgatat cctgacatgt tgtacaacat ttgtgactat attgatcctt
      361 ataaattcag catccaaaca gcagggcagg gaagcagttc ttgagcctca gcagcaaaga
      421 atattttagt agaacaa
//
LOCUS       KCOD01003128             520 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 347696pyr ultra-conserved element
            locus uce-7537, sequence.
ACCESSION   KCOD01003128
VERSION     KCOD01003128.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 520)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 520)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..520
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="347696pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>520
                     /note="ultra-conserved element locus uce-7537"
BASE COUNT          162 a          108 c          126 g          124 t
ORIGIN      
        1 gatgctggag cgctgtccca aatggcagac cagagcctgc tgattatatc cagcctgaga
       61 gtcctcagta gtgagtgtgg gagaagggag atgcttatta gaccgaatgg gagttccgga
      121 agaggagcgc tctgcggccc tgaggatgta aggaagattt gctaactttg ctttatagta
      181 ttcatgcaga taaggaagac tctcagtctc caatcataaa tcagtattat acagtatagt
      241 cccaaaggcc ataattactt ccagaagcag aaatttgaat gacccagata attagttcag
      301 tgcagctggt ccaaaaatta tttacataaa agccagtttt acttgagggg gaagaaaaac
      361 aaccttgcta ccaaaagcaa atgacccagt tagcttcatg caatgagact gaggagacag
      421 agcgtgagtg acaacacagt ggcctgtgcc atcacttctt ccctcttgtt ttcaggggac
      481 acacaatgag cctctctata gacaaacatg caggaaggca
//
LOCUS       KCOD01003129             696 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 347802pyr ultra-conserved element
            locus uce-4591, sequence.
ACCESSION   KCOD01003129
VERSION     KCOD01003129.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 696)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 696)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..696
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="347802pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>696
                     /note="ultra-conserved element locus uce-4591"
BASE COUNT          207 a          155 c          134 g          200 t
ORIGIN      
        1 gagaggcaaa caataaaagc tgagaccaaa ccagtttgcc ttctcctttt gtgcagcgcg
       61 tgtaatcact gaacttttga ctttaaagtt tttctctggt gcagtactgt agaaaaaaaa
      121 acaaataaac aaacaaacat ccccttggtg caaagaccgg tctaaggcaa tacctggtga
      181 gtggaatggt tgttgttgtt tacttgaagc agataaaaca cccaccttaa acccgccctc
      241 tattcagttc agcagcacct ccatactcca ataaaccgtt ttcattccat ctggcgtgcg
      301 tttgctctga agacattttc ctgtcaatct ctcctgccac attaaaaatc tgtcattact
      361 attgcattgc cgcctggctc ctgagatttg tctgactgct ttattgctcc gctcactgct
      421 acagccgaga agcagaaata aaggtttgtt gttgaaacat ggccgcaagg aaagtaggag
      481 gcacacatct gtcaaggtat tacctttctt caaccaggga ttaaggtgtt ttactgctct
      541 cgctactgag cagtcacact gaataaattt tctcagtaga acataaaaat gaactcatac
      601 attttgaact gggtttcatt ctttcaagcc aacccatata attatgcaat ggaatcagtg
      661 ttcaggggaa aaagaaaagt cagaaacgtt tgtgtg
//
LOCUS       KCOD01003130             711 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 347908pyr ultra-conserved element
            locus uce-2529, sequence.
ACCESSION   KCOD01003130
VERSION     KCOD01003130.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 711)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 711)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..711
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="347908pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>711
                     /note="ultra-conserved element locus uce-2529"
BASE COUNT          253 a          113 c          150 g          195 t
ORIGIN      
        1 acacaaaaat atcaataatt gtaatataaa atggtaaaga catggaaaaa caaaaccaaa
       61 aaattgctct tgtgcatgaa tgtttcttta tgatccaact tgcaacattt ttataggctg
      121 tatgtctgaa agaacataca tataatgacg tttaatgtgt agttgagagc aaaattattg
      181 cagtatatat atagtgaagc catataacaa aagagcagta gctagtgttt gcccttatat
      241 gagatgcagt catataatag agagccttaa agctagggtt tactgtactt tgggaattaa
      301 tcacataaac tataaattgg gttcaacagg ctggctgggt aaataggcgc agctaatgag
      361 gacactatga gatcttataa gagcgctgac tgccccagga caaaagtgcc gagctgcacc
      421 tgatggaaaa ctagaagaca tcaaagcata aaggattagt gctctcacag tgttgagaaa
      481 tggccagggg gagattcacc aacttattac ccacatccaa gctaatcctg ttatctgcaa
      541 aatatgactg tgttcaggaa ctgccaccac ctaaacttgc aggagactaa ttctgtgttt
      601 acatggacaa aagtgcaggg aattttcatc tgggcaaaga atatgagaga tgagcatttt
      661 taaggctttc ctttgtattg aatgtttgaa gaggggaaaa tataaaatta g
//
LOCUS       KCOD01003131             803 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 348022pyr ultra-conserved element
            locus uce-4863, sequence.
ACCESSION   KCOD01003131
VERSION     KCOD01003131.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 803)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 803)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..803
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="348022pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>803
                     /note="ultra-conserved element locus uce-4863"
BASE COUNT          197 a          164 c          143 g          299 t
ORIGIN      
        1 ggaagaacta tttaacatgt tttattttgt ttttcattta atattataga gggaaggttt
       61 ttttgttcgt tgatttcctt atttctagtg ttgaaaccaa tatgttttaa aactaaagga
      121 tgggttaata agcttgaaat agataactac aactgaaaac tgcacattaa gtaaaagaaa
      181 agaaatctcc tattttgtct ttgttgccag aaatcacagt gtagtgtcaa acactccaaa
      241 tgactgtcaa atataaattc ttcttccact ccatctttgg cagctgtttg ttaaggcatc
      301 taataacaga tgtgagaact gtaatgtgta caatgtgtaa gtgtccttgg ctgtcagtcc
      361 cattgcagtt tcaatgtgtg ttactatatg cagtatatac taagctaatg tagttgtttt
      421 gtcctttgtc ttctctgtgc tttatctcta gtccggagtg gtaaagtccc attcctgcag
      481 tcctagtgaa ccagtgattc ttgggggtta gtggtttttg tgtggtggcc ttcctctgta
      541 atgtcacctt atgctgcttc cactgtctgt atacctttta atttctgctg ttgctttgct
      601 gttgtgtatt ctcaaacccc cttcctttct ccccacacgt ttcccctctc tctttctctc
      661 gatctctcgt tctctcttct tcactctcag agataaaaga ctcttaacta gctcaaggtt
      721 aatggagcca tttttcccac agaggaattc tgggtatgac ttactcttcc agtgtacccc
      781 acaatgcact acagagtaat gct
//
LOCUS       KCOD01003132             964 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 348132pyr ultra-conserved element
            locus uce-1624, sequence.
ACCESSION   KCOD01003132
VERSION     KCOD01003132.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 964)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 964)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..964
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="348132pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>964
                     /note="ultra-conserved element locus uce-1624"
BASE COUNT          291 a          194 c          149 g          330 t
ORIGIN      
        1 ttgactatca tttgtttatc aggaaaagac tggtctagac cttaatcaaa atgaggaaaa
       61 tgaaatccct actaattagg gagtctcagc acttgctaga tcttttcaaa gatgaagagg
      121 ttaatcattt gcagtcagac agtaagaaat gaacctcttg tctcttcctt catcctctat
      181 gcagttcttc catttcaaca tccttgttac taaatctgag acaatgtgta attatacaga
      241 aggaaatctc tctggggtat agctgaagtt gcttaaattg tgctgattta caaagatgaa
      301 ggatttttaa aaaaaattac ctttttttca taatggcaaa caacctcctg caaagtcaac
      361 tccttttctg aaagtcattg ctagttttat aatttctgag tcattagata acagatagaa
      421 ctccacactt agtggtttca aatgtttatg gtctgcaatt cattcttaat gagctctctc
      481 catgtcttta ttcttcttca caccctcctg ctgggaaatg tcttactctg ccttggcttt
      541 tgttaatgat tccacaatca tttcagagcc atttcttctg ccttatgtaa ttctgacact
      601 gcataagagc ctggctctgc agcctcacag ttggaaatgt aacctttaat gtattaattt
      661 ctcttgctca aaacaattta acctctgtct tggttttgtg attgctaagt gttccaatta
      721 aatgcctctt tcattttttg tcctggaggg cttgatctta ccagtattat gtttaacata
      781 ccctacctag caaatgatga gcactccagg gtcccctcaa gtgttcttta tcaatccatt
      841 atctatctca tgagtgtctg tcacattttc aaaacaacaa cagaagagat taattaaact
      901 acttttaaac actaaataac aaaaaccagt acaagtggaa acaaataatt acatagcagg
      961 agaa
//
LOCUS       KCOD01003133             845 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 348244pyr ultra-conserved element
            locus uce-6823, sequence.
ACCESSION   KCOD01003133
VERSION     KCOD01003133.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 845)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 845)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..845
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="348244pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>845
                     /note="ultra-conserved element locus uce-6823"
BASE COUNT          276 a          135 c          124 g          310 t
ORIGIN      
        1 gacatacata tatcctttat ttaaggtgac aaaaaactta aacatatctt tcagtactgt
       61 ctcacgcaaa cagagtacat cactagcctg gacaccaagt tgtttaaagc tattatttag
      121 tactgtaata agtagcaatt taaatacaag gtaaaatcat tacattgtct tgtttactac
      181 tgatgttaat gtcaaactga cgtgtaatgc tccaaaaaaa ggcagcctat gatttgttat
      241 cattaaactg tcagttctgt cgtgttaggc atagattcat actatattct ttcagcatat
      301 ccctttattt tctatcagtc aaaaaccgaa gtgttttaat tgtgtctctg ctatttttct
      361 attaactgtt tcgtgcattt tttctctggc cttttaattg cagtttaata gtggtcatta
      421 acacattaag gggtgttaga agaacatttg aagtcctctt gacttctacc aaagttgaca
      481 cttcaatgct agagtaattt cagctattca tttatttaat agtgacctat gcaaatgtgg
      541 aaccatgtca ttttacaaat tgactgtaat aattaactag aaaggcagag taaaatgaaa
      601 caggttataa ttagaataaa actgctacag tattacgtca gctagaataa aataatctca
      661 aatgattaaa ttggtttcaa ttattaagaa tcagtttaat gtacccactg ttctgatttt
      721 ttacatttct cttttttgtg tgcattagat gtcacctcat acaatttatg cattttattc
      781 atcttggtaa aacaggcatt acaaaagttt aattaagtag taaaagactt catattattc
      841 cgttg
//
LOCUS       KCOD01003134             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 348355pyr ultra-conserved element
            locus uce-3609, sequence.
ACCESSION   KCOD01003134
VERSION     KCOD01003134.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="348355pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-3609"
BASE COUNT          237 a          130 c          153 g          182 t
ORIGIN      
        1 aagacataat gaagcctgaa ttaaaaatgt cagtttctgt gaatgttgat aacttggttc
       61 tttgtagtac aagtcaaaat gtgtctgttt gatgggttaa aatgacagtc tgcaaatggg
      121 agaagctaga gctaaaaaaa gaagatactt cccaaaagac ttttaaaaag taggcccgta
      181 atgcagtact ttaaggagaa gacctgtagg gtagaagagc cagtatcttt agaaagtaac
      241 caagcagcac taaaaggcaa tgtccatggc caatcaaaac tatttctcta gctgctgggg
      301 ctcttgcatc tctgtcttca cactagactg gaaacccttt gtactaattg ccagactgta
      361 ccagattttc tggttcagtt ccatcccata attgactgac aatgatgggc aaggaagggg
      421 aaaaattcag gctcaccact gcaagcagag ggtcagaaat ggtttcatag ggagcacatc
      481 actgcttggc actaaatgca gggttaagca agcatcatct gtactttctt ctaattccta
      541 ggttaaaagg gggataaaaa cattcacact gcagcagggc aaagagaaca ttttaaaagc
      601 tggcatagct tccgcaaaaa tcttccacag agacaagaaa atgcctagag gatttttgga
      661 agttggtctc taactgcagt gcattactta aataaataaa gc
//
LOCUS       KCOD01003135             632 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 348468pyr ultra-conserved element
            locus uce-2442, sequence.
ACCESSION   KCOD01003135
VERSION     KCOD01003135.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 632)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 632)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="348468pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>632
                     /note="ultra-conserved element locus uce-2442"
BASE COUNT          178 a          122 c          137 g          195 t
ORIGIN      
        1 gagatttgat atgttctatg aaagcacttg tcatttcatt actgtttttc aggagtttgt
       61 ggagaatagt aggaaatcta tgaaagaagc tggccgggga ggtggagctg agggcagaga
      121 gctaaaacca atggtaggtg cagatgagga ggtggcgatc ctccaagagt ttcactttta
      181 cttcttctcc ctctttgtct ttactgactg cacttcttca ggagaagttt ttgttctctg
      241 tatcactcaa gatgttctgc tttttctgtt tgtgagcttg cctatcacct ggatggcaga
      301 gtttttgtca cagctgagac catctcctgt aaaagtaaga tgaaaggaac tgtctcatat
      361 gaaacaaatg caggcatgat acgtggtata tgcagacacc tcaattgctg aatagtctaa
      421 aaataagatg gctctgagat ccctgagatg aacaattttt gctcatacat tccctacaaa
      481 agcctgaaat gaagaacact actgagtgca tccattgttg caaagttaaa ccaggtttta
      541 aagccctcac caaattatct tacacagtgc caaggaattg gatacagtga ttcctttcaa
      601 cctgctcaaa tgacattttt cccagttgtt tg
//
LOCUS       KCOD01003136             736 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 348576pyr ultra-conserved element
            locus uce-5215, sequence.
ACCESSION   KCOD01003136
VERSION     KCOD01003136.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 736)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 736)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="348576pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>736
                     /note="ultra-conserved element locus uce-5215"
BASE COUNT          149 a          185 c          165 g          237 t
ORIGIN      
        1 gctttgagca gccctgtttc agattggcct ttttatgttt gatataaaga atagttgttg
       61 gccaattcca tcttttcatc gctgctcttc aggcccgggt ccaagcggct tgtcagatgc
      121 tcattaactc cccctttggc tctttccagt gtgtctccta agctcattgt gccaagaact
      181 agcgcttctt tctctttaca tggctccctt tctctgctcc atcagggaga caaattactt
      241 tccaaaaggg atcgccaggg atggtttaat gagaatttct ccagcgctgg ccgtggaaat
      301 caatgtagtt aacattcggt gcacttaatt ggacttttct cttctgcctc cttcaaaaaa
      361 actctgaagc tatcctgtta atctctcatt tgtaatcaat tgtgttgact aaacaaaagt
      421 ctaggtcgtc ctttcttcct gtcccagaca atcctttgtt gcctctaaat gcctcattct
      481 tgagggctcc tggtcgtgta gatgggtccg atttttgaca gttcattatt gcgcttttgt
      541 ccatttaatc tccctcgctg tgttttgcat gtgcatgcct taatgagctc cgttggcaat
      601 taacatgttt ctagcagcaa actggttgct cagacgtttg gagagcggag tgcagggaaa
      661 agggcaacgc agctgccttg gtctcttccc ggtgcccggc gcgggacaca cctgggagcc
      721 gcccggtctc ggggaa
//
LOCUS       KCOD01003137             734 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 348683pyr ultra-conserved element
            locus uce-603, sequence.
ACCESSION   KCOD01003137
VERSION     KCOD01003137.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 734)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 734)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..734
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="348683pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>734
                     /note="ultra-conserved element locus uce-603"
BASE COUNT          202 a          154 c          174 g          204 t
ORIGIN      
        1 ttttgaaaat ggcacatctc agaggtattg ctttcaaaat gatctcaggg tgtaaagaaa
       61 gcagtaataa cagcgccagg ctgtcctaat tttcccacca gtttttcaat gtttcagctg
      121 cctcagagac ttaaagtact ctcattaggt agctgcagag gcttgcttgc ctgctccatc
      181 actctctcta gctgcctctc tcactccccc cccctcctgc cttgggagtg actgtgaaga
      241 tcatttgctg ccgtgattgg caggttagag cattcgatca gatgagttcc tcttagtgca
      301 ggtcaaaaag gctggttagc aggagctgtc gaaaaatgcc agcagcattc gaaatgggaa
      361 atgtcatgac ttcgaggcag ggggtgccac ctggaacaga aagcccccag ctcattagca
      421 agttacagga tgcaagctta actggaggga gcagaggagg aaagataata cccaataggg
      481 aaaattattg tgaagtggaa ttgatttcat gtataatttg tttatcacta gaggggacaa
      541 atgctgtcct cctgacatgt gcggaggagt gtggactatg aatgaagcaa tttagcataa
      601 tctccaggtt gagctctgga tttaaagact gccaacttct ttcttcccaa ctgtggaagt
      661 gatcaggtca tgttgtatta attaaacctg acatactctc aaatggttta tctgggcaat
      721 tttagcaatt taac
//
LOCUS       KCOD01003138             582 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 348793pyr ultra-conserved element
            locus uce-5576, sequence.
ACCESSION   KCOD01003138
VERSION     KCOD01003138.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 582)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="348793pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>582
                     /note="ultra-conserved element locus uce-5576"
BASE COUNT          171 a          119 c          119 g          173 t
ORIGIN      
        1 gtttattctt cttcaattta ccacttccat tgtgtattta ttaaggaaac gtggctgtta
       61 gcaatttcag caaccccatt gtgctcacat tattcaagaa acctaataat ccacatgaac
      121 taattctgac ttactgatgg tctgcttcac taaatcaggg tgattttttc tagtgaataa
      181 tggacgatgc ggtgtgccag taccttaatt aaagagagcc tctcttattc ttgatcttat
      241 tttaatttac agggtaatac tacaataata tcactaatgg aaggtacatt aaagggcata
      301 aagtagcatt aactgtatta aattatggca cttgtgttaa ttaactgctg aagcaagatg
      361 gtcctaacag ctagaaaggt cgactaatgc ataaataaag tcttctggga tgggaagcta
      421 agaaagagca gacaggcctt gctgcagagg atcagatcct gtgccataac ctcaggaagg
      481 tttctctcac tgcagaggtg gcctgagctg tctgcaggct ctgcctctct tcaattccac
      541 ctgaaggaca gtcctggcag taagcagcga ggtacacctc cc
//
LOCUS       KCOD01003139             452 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 348904pyr ultra-conserved element
            locus uce-5377, sequence.
ACCESSION   KCOD01003139
VERSION     KCOD01003139.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 452)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 452)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..452
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="348904pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>452
                     /note="ultra-conserved element locus uce-5377"
BASE COUNT          125 a           82 c          127 g          118 t
ORIGIN      
        1 aaaaaaataa aaataataat aggggtaata agagaggagg taatggaacg ttctccaact
       61 gggcacatgt cagaagccat tatatgtggt gcagatttgc ataattcaag aagcatcaaa
      121 ttaaatttgc ataattcctt tgattacact tgttattaaa tgtaagtgac attgatttac
      181 aaaatggccc aatataaggt taatagcaaa tgtcaccttc cagcagggtg aatagggtgc
      241 gtgtgtggtg gtggtggtga tggaggaggg ggagaggggg gcctggggag gaaggcgagc
      301 agacaattga tttctgctcc tctctcttcc ttaaagggct caggtctcct ttgcagagga
      361 gctctcggct ctccgagggc tgcacttggc cgggcatgca gtgtcatcag gatgccctgc
      421 caagtggcat tggtgccatg actctgctac ct
//
LOCUS       KCOD01003140             665 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 349010pyr ultra-conserved element
            locus uce-5677, sequence.
ACCESSION   KCOD01003140
VERSION     KCOD01003140.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 665)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 665)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="349010pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>665
                     /note="ultra-conserved element locus uce-5677"
BASE COUNT          203 a          140 c          125 g          197 t
ORIGIN      
        1 aatctatgca attttgcatt aataaaaaaa taagaaagaa actaaagctc ttcctcagaa
       61 atctagacat tagcatactc gccctaatac tttaatcccc atcattgttt ataatcgggc
      121 tacacacaag gttatgcaca gtgctgactg atttatgata tattttgttt taattgaaac
      181 ggcaacattt aggttccacc ttaacagtgc accttaaaag attatctcgg ttatttcaca
      241 ggcaccgagc cggcactaat agtccaaggc agatattgaa aagcagcaca gggccaggca
      301 gatctattag aaattcccat ccacgcgcct catacatatt gatttctgac accaagcagc
      361 agtgaaagcc cccgtgggaa taatatattt agcagggttc gctgcgagga ggtcacagag
      421 tgcatacaga ttagctacag aggaccaagg cactagtgtt ggagccaaat gctagatttt
      481 atatcatttt aatctgaact tttataatcc ttttagttct tctttctctg gatggcagag
      541 gaaaggctcc tccgcatgta tcatgcatct tttttctttt ccttctttat tcctcctata
      601 aatgtgcaaa tgctgttgta atggggagga atgtaccctt agcattagca ggaataggca
      661 caaac
//
LOCUS       KCOD01003141             785 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 349114pyr ultra-conserved element
            locus uce-5497, sequence.
ACCESSION   KCOD01003141
VERSION     KCOD01003141.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 785)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 785)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..785
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="349114pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>785
                     /note="ultra-conserved element locus uce-5497"
BASE COUNT          206 a          165 c          155 g          259 t
ORIGIN      
        1 tcccttctct ttggtggaat tacattggga tgaattcagc tcattgtgct tgcttggaag
       61 gacccaaagg gtggctccta tcacatctcg tggctaccac cttggccaat attaacagga
      121 ttcctgcaca gtcagcgaat tctttgggag gaaaagtccg ccctccccat gcatattact
      181 tttcggcaac atgaaactgt aatcagtgga gctcagcttg gcaattttaa tcccctgctg
      241 tctactttgg ggctgcttat tatgcagcca gcattcactc aacataatgg ttgctacctg
      301 ccaatgtgct ttgagggata ttgttagcat taaatttgcc atttacattt tcatgtttga
      361 cataattgag gaatgaatgc tcttatgaaa attaaacttg tggtcctcct ggactactgt
      421 aaccctgtta aaatgtaatg cgattcttga tgcgtcttct ttaggttttt attaaataga
      481 atatccgtat gactaattcc cctggcctaa atgtaggctg ggaaggaaca ttattgatag
      541 ggctgagcac aaatggccct ctatactcag cctctaatgg cctaataatg cattatactt
      601 gaatcagaaa tactttgagt tgtagtgctt attgccatta ttgaaaacac ctggatgctc
      661 cattcatcaa ggttacatca aaatgggccc atttgtttat tagtctgtca gtaaacatct
      721 ttatttagtt tcatgttcct ctcctctcag taacatcgga gaggacaaga ccatgtagtg
      781 tatct
//
LOCUS       KCOD01003142             418 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 349224pyr ultra-conserved element
            locus uce-6437, sequence.
ACCESSION   KCOD01003142
VERSION     KCOD01003142.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 418)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 418)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..418
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="349224pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>418
                     /note="ultra-conserved element locus uce-6437"
BASE COUNT          122 a           76 c           96 g          124 t
ORIGIN      
        1 ttagtttcat tttattattt tttatgaact ggaggggcca ggatggggct aaaatttccc
       61 cttgaacatg atgtcaatat gttggcatgt cttcttttat taagatgcca tccaactgat
      121 aacaagtcct gctgtgtttt accaacataa aaaattagac tggagaccag ggagcggcag
      181 gtggcttttg gcaccaagaa ataatcacac ttgatgtgga aagtaaagta aaaggagcca
      241 tctgttcact gcaggaggac gtgaaaaatc acattaacat attgtcacta acatcatgaa
      301 atacacagtt aataataaat ttagttatca tggcgagctg cattgggtgc ttccttagaa
      361 caggtattgt gtggaagccc ccttgttgag ctctgtcctg ggtgctgtgg cagcccga
//
LOCUS       KCOD01003143             604 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 349330pyr ultra-conserved element
            locus uce-4608, sequence.
ACCESSION   KCOD01003143
VERSION     KCOD01003143.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 604)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 604)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..604
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="349330pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>604
                     /note="ultra-conserved element locus uce-4608"
BASE COUNT          177 a          125 c          117 g          185 t
ORIGIN      
        1 ttcaaattac cattcaaata aaataaaata accaggaggt ctagcacgtt atgtcactaa
       61 gtcacacggt aagagggacc atcaaagaat ggtgggaatt atcacagcag cttgctcctt
      121 gttagaagca tttacctcat gaccctttca tttgcctact gccactttag tttaagagtg
      181 acaacactgt atagcactct gcactttctg cctccttgcc ctttccctta gcaccagctg
      241 cctttgtaaa gcagcctggt gaaggagtga acaaaacctt gtgggataag tctgacactg
      301 gaagttaatg attatcagtc gaaacaaaac acttgtttac atgttgtagt cattagaggt
      361 tccagtcagt catacctcgg ctgggattcc tgccaaatgt tttgagggtt ctttcacaag
      421 ctgtgcagtt ttgtaaatac aaaagcactc ttattaagcc tttttagtat tagactgtgc
      481 aattaagact acgggtaatt agattccttt atttggagta gaatggtcca agatactttc
      541 ttagccacag gataccatca tatctctatt tgggtgttcc attacagatc aatgactaag
      601 agaa
//
LOCUS       KCOD01003144             746 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 349437pyr ultra-conserved element
            locus uce-2090, sequence.
ACCESSION   KCOD01003144
VERSION     KCOD01003144.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 746)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 746)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..746
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="349437pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>746
                     /note="ultra-conserved element locus uce-2090"
BASE COUNT          217 a          154 c          156 g          219 t
ORIGIN      
        1 agctgaaagg actcttattc caagaatgat cttctttttt agactgtatt gagttgggac
       61 tgattttgat agccagtttc agtcaagaat cataaagtta ttgcacattt aagaccgtca
      121 gtatgagaat cattctctgt ctctctccct actgttcttt cccctccctt tctctctctc
      181 atcatttcac aggactgcaa ggttacagaa aggtctaatc aattgtcaaa ctctccttta
      241 tctctgagaa ggtggtaaaa aaatctaact gccctgctgt agggggttct tctgactaca
      301 cagcaccctt tttcacatac aatgctacca tgattaatgt cctcccacct cagaccttgt
      361 taaaacctgt tctttaaagc aggctggtgc accacagtga gagcaagagc aaggttgcat
      421 aaatcaacgt gttctcacag cccccaggat atccattata gatgccagct ggatgactgg
      481 aagatagaga aaaatgaata ttgtatcctg tggccttttg cctctaatga ccacttttca
      541 acatttttga aggcatgatt aaattttgat aactggggaa gtcactctga gcaggctgaa
      601 atagagataa attgactgag ggtctgacat cccagtggag agcaggcaac taattagtgt
      661 gtgaatctca ctctgaaaga gatgtaaaag ggaggctagt ttaatcagag gagctgctga
      721 ggtacaggaa tagtcaggga taatag
//
LOCUS       KCOD01003145             525 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 349637pyr ultra-conserved element
            locus uce-2780, sequence.
ACCESSION   KCOD01003145
VERSION     KCOD01003145.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 525)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 525)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..525
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="349637pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>525
                     /note="ultra-conserved element locus uce-2780"
BASE COUNT          156 a          105 c           88 g          176 t
ORIGIN      
        1 tgtgtgatga caaggggggc atttacaaaa cggagtccaa atgaaaagct gacatagctt
       61 tttagattgt atctcattct tttttctact ttctgtatag cctttctttt atagcacagt
      121 tgaatcccta aataccccac tactttgtat tgtcaggtca cctcttaggt tagcctgaga
      181 aagcctgaga aaagttccac aggaaagatg cactatttaa cggaattcaa tctgtcccaa
      241 tagatttgaa tcactaacat aaatgtatga atgtagatta tatctctgta atgaggcctg
      301 aatcattctc agttacttca aaggcctgaa attcaacctt cctttttagc agcaacaatc
      361 agaccttaat gggtttcttt attaattgtt ccattgctaa gcttgaaaag cagctacctt
      421 cagtacaagt cctggactag aaactacctg ctgcttcaaa aacagtgctt ctgttttgcc
      481 ttttaaattc tgtgaaatat ttcctgcact atggttctat aaaag
//
LOCUS       KCOD01003146             686 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 349746pyr ultra-conserved element
            locus uce-2415, sequence.
ACCESSION   KCOD01003146
VERSION     KCOD01003146.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 686)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="349746pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>686
                     /note="ultra-conserved element locus uce-2415"
BASE COUNT          187 a          169 c          157 g          173 t
ORIGIN      
        1 tggcagagtg cacagtgttc cttgatagct gatttacatc atcccttatt tttagcagcc
       61 actggagtgg cagggggctg tgtgacaatg acggctgctg atcaaagtga cagagatgag
      121 tcagcagtga gtgcagagat agcagacctt taggaggcat cctgagatgg agcaggagga
      181 tccttattct caggctctgg aggaggagct ggcacatttt cctctttctt ttgtgcagcc
      241 aaaaattcat gaatcgccct ctctatctga ggcctgaaga tgtggtttag ttttggatcc
      301 accacctgag aaataattct gtccactcca gcttccagca ttcctgacct tgaacaaaga
      361 caaagaagtc attcagttcc tctgaaaaac ttctccccaa tctcctccag caattctcca
      421 gagccctcct gtcaactgca attagcatta acatggtgag aactgcagcc tactcaggag
      481 atccttaaca gggacttgtt tcactcactc tccctgctcc ctgcagaatt aacaactcac
      541 atctggtctc ccaggtactt aaatgacacc ttggccaaga gccactttta acagggctcc
      601 tgtggaaacc gggtcaacat gaaagcaaac aaacacattt tggcacagaa agagaaataa
      661 gctattctga ggggagggca ggtgag
//
LOCUS       KCOD01003147             395 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 349854pyr ultra-conserved element
            locus uce-5568, sequence.
ACCESSION   KCOD01003147
VERSION     KCOD01003147.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 395)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 395)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..395
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="349854pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>395
                     /note="ultra-conserved element locus uce-5568"
BASE COUNT           79 a          142 c          107 g           67 t
ORIGIN      
        1 aaaaggggat gccttcgcac ggtctgatca tcaccatcaa gagttaaaga gagagtgaaa
       61 tggctaacgt acacacaccc cgctccatac cggagaagag tctcccagct gaggtttatg
      121 ctctgtgagg accaggctga aactgaccgc ccccacggcc acgctggaca cccctaaccc
      181 tatctccagc acggagagca ccaggaggct cccgatgatc tggctgctgg tgcacatcct
      241 ccctcggtca tccttccttc ccgatcagcc ggggaaaccg cgcatcctcc tcctccggcg
      301 ctcccgcggc cctaagtcgc ccccaaactt ttcttccttc gccggcagcc ggggcggagc
      361 ggcgcatccg cggccggcgg gcgctgccga gggac
//
LOCUS       KCOD01003148             720 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 349964pyr ultra-conserved element
            locus uce-4976, sequence.
ACCESSION   KCOD01003148
VERSION     KCOD01003148.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 720)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 720)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..720
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="349964pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>720
                     /note="ultra-conserved element locus uce-4976"
BASE COUNT          239 a          160 c          175 g          146 t
ORIGIN      
        1 ggtcccctct cttgcctgtg tgcaaaccat tatatgaaga ttgtatgatg gggccagcag
       61 tcaggaggga cattggggct gtgtggtcac attattaatt tacttttctg ttttctgttt
      121 ccttccttct gctcctcctg caacacttgc ggcatttcag gtttctaaag tcaacggggt
      181 cactcgaatg tcatctccga gtgcaaatgc agccagtgcc aaaaagatga gagaagtcag
      241 accttcaccg tccaaaactg tgaagtacac tgcaacagtg acaaagggaa ctgtcacata
      301 caccaaagcc aagaaagaac tggtcaagga aaccaaacta aatcaccaca aacccagttc
      361 acctgtcaac cacacaatct cagggaaaat agaaagtagc aatgcaaaaa cccgcaaaca
      421 ggtgctatcc cttggagcat ccaagtctaa caataccgct gttaatggtg taaaagtcaa
      481 tggcaagttg aaccaaaaga catgcactaa ggaggtgggg agacagttaa gggaggggct
      541 gcgcaattcg aagaggaggc tggaagagac gaatcacatg gacaaaatac agtcgcccac
      601 caagagaatg aaaggggccg tcaacttggc agaagctgcc agcaaaaagg cagcagtaga
      661 aaagcctttg ctgaatggac accttagaaa ggaagtgcca gagaagagtt tggaaagaaa
//
LOCUS       KCOD01003149             592 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 350071pyr ultra-conserved element
            locus uce-3497, sequence.
ACCESSION   KCOD01003149
VERSION     KCOD01003149.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 592)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 592)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..592
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="350071pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>592
                     /note="ultra-conserved element locus uce-3497"
BASE COUNT          195 a           99 c          118 g          180 t
ORIGIN      
        1 attgaagaaa agcaggcaag aaaagatggt tatgtattag tacaatagct cagaggcttt
       61 tcattttagg atacaaagag ggagtagaga atgctgtttt ctttttaaaa accttttaaa
      121 aatggtaact gcatcctgct cttgtagatg tattacttat gacatcccag ttttcatccg
      181 ttcatgattt tacattagag ttaaatctct gcagcttgaa tctcacggct gagttagcca
      241 gagcccataa aatattgaaa cctttagagc agcagccagc caggttgaga gaagttcatg
      301 tccaaagctg agctttagat tctgagacat cccaattgga gtgtagtaca gaaaaaagca
      361 ctgataaaat tttcataaaa atgagctaag gatattgcta gcatgcttcc cagcatctat
      421 atgaaaactt aatctgagct aatggaaagg atatgaaagc ctttctcaat tcaaacacag
      481 tcagtgcata attcataaat tattgtcaga gaagtgattc tgctctgaga tttattctct
      541 tttggatagg agcaactgga ggaaaaactg ggtctttttg acctttaatg cc
//
LOCUS       KCOD01003150             574 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 350181pyr ultra-conserved element
            locus uce-5186, sequence.
ACCESSION   KCOD01003150
VERSION     KCOD01003150.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 574)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 574)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..574
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="350181pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>574
                     /note="ultra-conserved element locus uce-5186"
BASE COUNT          200 a          114 c          111 g          149 t
ORIGIN      
        1 acacataccc acagaagagg ccaaatattt ggaaattcaa aatagtgaga gtaaaagcaa
       61 caaggccacc gtgtagagaa agcagaagac aagtactcac cagtgtagca tatgttatac
      121 ctgcaacatg ctctattctc catggagggc ttttcaacac caaaatgggg gacaaggtga
      181 agagaaggga gtttaaagtg caagctgcac tctctgctcc aaaaagcaca ctatgctgat
      241 tcaaaaaaaa cattttcaaa aatgcctgtg ggtaaatttg agctgcccac agctccccag
      301 gggcagtcga acttgctgtc gagccattta tgtggatttc agtcaaattc taattttagt
      361 gttcattaaa catgggtaat tcccaagcca atccctgcat cactctacaa tataggtcat
      421 cctagcttag aaaacatata cagacatcaa agtgcaacca tttcattata agtattagct
      481 ttataaataa ttatgaactt cttaattcct tacaagatgc tgtataatca caaatgcctt
      541 acaataggaa gagggtggga ggttatggta tata
//
LOCUS       KCOD01003151             690 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 350287pyr ultra-conserved element
            locus uce-4287, sequence.
ACCESSION   KCOD01003151
VERSION     KCOD01003151.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 690)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 690)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..690
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="350287pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>690
                     /note="ultra-conserved element locus uce-4287"
BASE COUNT          230 a          115 c          106 g          239 t
ORIGIN      
        1 aaaaatgctg tgcaaagtac atattttgtg tacgcatgtg aaaaatgcta agaattattt
       61 agcaactgga aagactgttc acaaaatgcc tttgatttat tgctgtatat actacagatc
      121 cgtatcacat attcttacat tattttattc aaaaacttgt atgaaccatg agttggcatg
      181 ttgtagaata ctgaaaaggc attaatcaac ccaaataaac aagtacatag atctatctaa
      241 caactatgaa gtagttaata aattttagca attttattac agaaaaaagg tctaaaagag
      301 tagtgcttaa ttatctggac tcctctgtgc tgggctgtct tttgattgta ttaatgaagc
      361 agctggccca ttgtttctct ttaattcctc tattgtttta agaatatgtc acagctcttt
      421 attcttttat caggtgctgt gcaggaggat tcacacaata actcatattc ctactgtatt
      481 tgccaatgca caaagaaacc tccaaagcat ttttcaaaga aggggcacac ataatttata
      541 agttctgttc cttgtaccac tctactgtca aaaatttcaa cagtattgga tttgaatgaa
      601 ttataatttt tttattaaac aatgtgtcca catatagata tatgtacttt gttcatgcca
      661 aaaattaaag atctgcccag taacttgtgc
//
LOCUS       KCOD01003152             595 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 350394pyr ultra-conserved element
            locus uce-6137, sequence.
ACCESSION   KCOD01003152
VERSION     KCOD01003152.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 595)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 595)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..595
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="350394pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>595
                     /note="ultra-conserved element locus uce-6137"
BASE COUNT          166 a          144 c          135 g          150 t
ORIGIN      
        1 ctccagccgc cttcagcatc tcctaataac ttggcatatt cacttaatac aggccggctc
       61 cttccaagtc gttagcggcg gcagccggaa cgctgacccg gtttgcttgc caagacagag
      121 caaagagaaa ccttcacata atcatttcca aacattaaaa tggctccatt gtcattatag
      181 ctgagagatt gaattcgcct catcaaagcg gcgtatgaca ggtgactcaa taggctggtg
      241 ccaagcgcgg aggcaggaga ttagcagggc actgatatca ttatttccgc ctatcacaga
      301 ttcggcaggg aggcaattgt aatttctggg cttattagtc tgcattcgca ggaaaaaacc
      361 tggtgataaa cctcagtgtg acagccaggc atttgtgcag caagtgctgt cacagtgaca
      421 cttggaaaat gccaatgtgg atacgttctc ctaatccccc ctaatggagg ttaaagcctg
      481 gcacaaaggc actcttatcg ctgatcggga cactaataac atttgcattt ttaagttaaa
      541 tatagtaagt aaagagtaag tctcctcctc gcggcttcgg caattaactc agcct
//
LOCUS       KCOD01003153             747 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 350507pyr ultra-conserved element
            locus uce-812, sequence.
ACCESSION   KCOD01003153
VERSION     KCOD01003153.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 747)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 747)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..747
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="350507pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>747
                     /note="ultra-conserved element locus uce-812"
BASE COUNT          233 a          142 c          133 g          239 t
ORIGIN      
        1 gggttctgac tgcttgtgaa tttttgtacc tgcctgtaca acatagcacc atttgaatag
       61 gcatttcctg atgaaaacaa gaaatatacc agggagcatc taatctcaaa gcttcctctt
      121 agcagcactg tgatggaccc aagaccctgc aatgcaatta ccatagcatc gtcttgatgt
      181 ataggcttga cacagtaaag tagggtacac aagcaccatg tggctcaaat tctgaatttt
      241 atttgcctat cggttgagct acatgctcgc ttcattgagc atgacaacct agttttaagt
      301 gtcatttaat tttcattttg aaatataatt acaaagtgtt cactgtaaga tatcactcgt
      361 ctgcaaatgt gtcaagatta atttgtgcta gcttattcac aagtgtcaat agttaattac
      421 tgtgtcatct ctagatggct aaatgacatt ctaacttctg attttttaca gtgttccttt
      481 atgttatttt ccattagggg atgagtccat attcctacat gtgggcaaat acccaagcac
      541 ataaaatacc agacgtcaca actcattaaa atcaacagag catacattgc tgtatatatc
      601 ctataaaata tatttaactg aaaagataat tcaagtaata atgtcagatt cctaaaaacc
      661 acacattaat ttggatctgt ctgatctaat gcctggggga ctagtgcatg ggatcattgt
      721 tgtgagaaga ggacagctct ttagaca
//
LOCUS       KCOD01003154             712 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 350618pyr ultra-conserved element
            locus uce-5394, sequence.
ACCESSION   KCOD01003154
VERSION     KCOD01003154.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 712)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 712)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..712
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="350618pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>712
                     /note="ultra-conserved element locus uce-5394"
BASE COUNT          199 a          176 c          148 g          189 t
ORIGIN      
        1 atgtctggta aagccctcct agctgaacag gacatggtag catcattact aaagcaggaa
       61 tacattaact aaggactgag aaaacataca ggagcttctt gcaaaagcaa gtgagggttc
      121 cttttttcct tcccacaagt cctgtttgta aggatcctct tcagactccc aagcatgttg
      181 aaccacacca tccccctgca tcctccctcc tccactgtag atatacaagg ctaagttgat
      241 gagctgttca gcttagtgtg aaatgtgtta cattttcccc ccagctgctt cctgattgca
      301 gtatttactt ttaatctcct ctgcctcaat gcccgataaa aactttgtca cattagatgg
      361 tgacagatgg gaaagagaag ggggggatca ctgcaaggga acgtcctggc ttcccaataa
      421 tttttcacaa cgccaattat gtccttcagt gcttcccggc atgtgcaccc atgtcagcag
      481 agaaggaaat agaaaggcat aaataaagac aaaaccaggc actgcgtggc tttaataaca
      541 tttctcattt gggtgaaata ttgttggatt ctctcctgtg ctggaaaaca cacacacaca
      601 cagagacaca gatgcgtaga gttcacaact gctttcctca tgcgtgggta ctgccatcct
      661 cacaagcagc tcgcattgtg atcagggtgc agatgtcccc tgctttctga aa
//
LOCUS       KCOD01003155             829 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 350729pyr ultra-conserved element
            locus uce-6879, sequence.
ACCESSION   KCOD01003155
VERSION     KCOD01003155.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 829)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 829)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..829
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="350729pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>829
                     /note="ultra-conserved element locus uce-6879"
BASE COUNT          273 a          125 c          163 g          268 t
ORIGIN      
        1 taattgctat gctggattct ttttgaatta agttgggttt ctaccaagca atagtttggt
       61 gtatgtttgt atgcgtgcaa atgtgtgtaa cgtatataca cataaagtgt atatttagta
      121 agtggatatg agtaactgct gtgtcatgta aatacagata attacaatct ctcaaggaaa
      181 agtttgcaga tattatatat attcctactt ctgtctgagg agtaaagaaa tttctctgct
      241 gaatagctgt tagtatctat tttacaagat ttactcattt tcaggtacct aatgtagctg
      301 ctagcatgca tgcacgacaa tacaatttat atggtaaatg gaaccaaata atggcttcac
      361 tgaatgttat ggctgcactg aagggaaatg tcacggtaaa tagctgccaa attatggatc
      421 atgccgaagt gtcacaactg cactaaagac aaatagcact agaggctatt gccactgtga
      481 cgcttttgag ttatgaagaa gaggagcagc ctgatgtgag cctctttgtg tcctcattat
      541 agcaaagggt tactggtgca gtgtacaaga aaacctagtc ctacatggtg gctagttatt
      601 aatctgttct tttcgaatca acagctgtag caaaccagaa aatcttttcc ttgctttatg
      661 aatacatata aacacataca aacaaagaaa aacctgcagg ttttatgaat gtaaatgtgt
      721 acgggaaatg actagtaatg gaaaaatgtt gtaataaaat aatctaatca aagaatatta
      781 ttaaatttaa tatcgtatgt gtctgaaagc tttagttgct tcttatgca
//
LOCUS       KCOD01003156             782 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 350844pyr ultra-conserved element
            locus uce-1606, sequence.
ACCESSION   KCOD01003156
VERSION     KCOD01003156.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 782)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 782)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..782
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="350844pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>782
                     /note="ultra-conserved element locus uce-1606"
BASE COUNT          258 a          159 c          156 g          209 t
ORIGIN      
        1 aacatgtgcc agtcaatatt ggtacactgt gacccttgat gcctcctaag caaaactatt
       61 aagtccaaca ttttctcctg taagcactta tctgtaagga tggctaacat gtcctctaaa
      121 gcagatattg aaactgattg gacaataggt agataccaga caggggcctg ggggccgacc
      181 tctagaaata gggggagaaa atcttaatct gcaacacaat gcagctctct tgaaacccta
      241 tcattttcac ttcccatgtg tctgctgcct gactgtgaat ggatttgaaa aggaatggtt
      301 agtgctgaaa attggatcag agctaacatt ctctcatttt tatcagcagc tgccaaaggt
      361 catctgacat aatagctgat gaattcaagc ccagtggatt tcatttgcaa ttttcaattt
      421 actgaggcct ccaaacccca cagtgataaa agcttcccct atcgtggcct gtcacaaaca
      481 tcaagaaact gcacaaaccc acaagaaaga aataggagaa agctgtgcat catcacagtt
      541 acagataagg agaacaggaa gaaacagtat catgtagaaa ggtgtggagc ggcatgtgtg
      601 gttgagtttc taaatgccaa ttgtaatgaa aagactatga agagcaatca aataacttct
      661 acagaataac atcatggttc ccctccttca gtttcaaaat tgccttctaa tctcttgctt
      721 gacatcctga agataaaagt gaaagtgaaa ataacctgtt tatttagaca tggaaagtat
      781 tg
//
LOCUS       KCOD01003157             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 350952pyr ultra-conserved element
            locus uce-7620, sequence.
ACCESSION   KCOD01003157
VERSION     KCOD01003157.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="350952pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-7620"
BASE COUNT          201 a          114 c          125 g          200 t
ORIGIN      
        1 ttcattatta actgcctgaa gcatcacacc tctctcacct ttgctggaat gtctgaacat
       61 tagggtaaac aacacgctgc tgtcttatca taatgcggtt tgcttcactg cagcaagaac
      121 ttgtcagaaa cagattgtga tgttgacttc tcaatagggc ctaaattaga cttctataaa
      181 aagaatattg catatttatt tccacaataa caccaaggaa aaacgttagt caagaagcaa
      241 gcaattgggt gaataaataa gcttgtcttt gttctcatca attaagttat tacatcagtt
      301 ggaaaaccag tgaattataa tacagatgtt taatgaaaca ctgctgtgcc tataagtcaa
      361 actcctattt tgtggtgtga ttttggctgc atagttttgt gtgtgttaaa ccgtatttat
      421 tagctgatac ccattattat tttgagcaag gtataattca gttgtcaggc tccagctctg
      481 ggaaggagat ttaatcagtg agagcccgct ttgctgctga gcataaaaca atgcgggttt
      541 catgaagcaa tcacaccagt gtgaaaaaat gggattaatt agtattgtac aagaacaggc
      601 agcatgctca ttaaaacctt gtgagctgcc tcttgataaa
//
LOCUS       KCOD01003158             488 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 351060pyr ultra-conserved element
            locus uce-6486, sequence.
ACCESSION   KCOD01003158
VERSION     KCOD01003158.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 488)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 488)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..488
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="351060pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>488
                     /note="ultra-conserved element locus uce-6486"
BASE COUNT          145 a           91 c           86 g          166 t
ORIGIN      
        1 gtctttcaat cactgctacc tgtggcctat ttatgtggat ggcattcatc agtatggcag
       61 gaaatattaa acaagtgcta gacagttatt agctctcctt gagcagaagt cctcataccc
      121 tctattcata taccatggga aaaattcact tggtattttc tttcttgcaa ctgttctgct
      181 gttcgtaatt tgatggaaaa ttgattaatc acacatttaa ctcaatgcaa gatcttctgc
      241 actgtaataa attatggcca ttaatcaata agtacaaagt aattctggga gtctggagac
      301 atgctggttt ctaatagaaa aacttgtgct taggccttct tgccagtgac cacttcatct
      361 gaggtatttt gcacctgcct caatccaatt agatgacata attaatgaat ctcggtgcag
      421 ttgataattt gttatacaaa agaaagaatg ttttggcaca tctattaagt cctgatgtac
      481 aaatcttt
//
LOCUS       KCOD01003159             678 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 351171pyr ultra-conserved element
            locus uce-5880, sequence.
ACCESSION   KCOD01003159
VERSION     KCOD01003159.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 678)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 678)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..678
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="351171pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>678
                     /note="ultra-conserved element locus uce-5880"
BASE COUNT          231 a          135 c          126 g          186 t
ORIGIN      
        1 agagcaagta aaagcaggag agagacagag ggagcgagag gtaagaaact cataatggga
       61 tttttcatgt ggaacgatca ttttatctaa tacgtctgaa aatgtaatcc attactacta
      121 attaccatgc tggcattgaa atacaggatc acacttactc cagatccaga tagaggccct
      181 aatctctcca ttcattgttc tttccatccc acctcgcctc cctcccttcc aagaagaaat
      241 tcagcccttc ggacattagt gaagaagggc ccgaggtctc cctatcatcc taaagcagaa
      301 gctaaacaat attagccaat catttttgat agatgaagca tggaaattag ttccagagtt
      361 taactgataa ctgaaaccac acagttacat tccattatgg cagccttaat tgatgagctc
      421 attaagccca ttattagaga aattgatttc aaataggcac ttaaaactgg ctggcaaaag
      481 aaaaaggtga agagataccg tacaatgtga agaaagtaac taaaatacat aatgaagcaa
      541 gtaattttat aggtttgttt aatgaaagcc tcaagagcat attagttgct gtgtggattt
      601 taaacactca ttttatgtac taataaagct cccgtccatt atgggagctc tgaatgcctc
      661 caatctttaa tgcagctc
//
LOCUS       KCOD01003160             683 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 351279pyr ultra-conserved element
            locus uce-914, sequence.
ACCESSION   KCOD01003160
VERSION     KCOD01003160.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 683)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 683)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="351279pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>683
                     /note="ultra-conserved element locus uce-914"
BASE COUNT          233 a          110 c          130 g          210 t
ORIGIN      
        1 ggattgtgat ggcttcacat ttgttcaggt ctccaaggac ctgcaccaat aaatgtgaaa
       61 gagacaacag cagaatggca tactttccca tttccaccag gatgatactc taaattaagt
      121 ctaaccttaa atgtataatc tgtccttgaa aggatatagc atcttcaagc tcttggcatc
      181 ccttacgaga aaaaattggt tctaagggtc tctgatcttg tgttttagta aaatagaact
      241 gcacggctga ctgacagttc tgatctaaag catttacgtt taagttttga tctctctgct
      301 tttgattaaa actaatgagc tcatttaatt caaaatggga atctctgata agagaaataa
      361 ggttgatgtg attggattag aggggcaaat taaactctta gagcagaagt ttgtgcttat
      421 atagtgtatt aaaaagctgt tggcgtatta tggtgtgtta gatgatgaga aaaatttcat
      481 agtaattcat atttaatcag aagaaatgaa agtactaaat ataacatggc tctgcttttc
      541 cctcgagtga taaagagctg tacatttaaa atgacatcga attccttctc tctaaaacaa
      601 tcttaagaga cacactaaag aaagggacac tgttgtcagt tatcacaata gaactgaaat
      661 gtcacaaaca caagacaagt tga
//
LOCUS       KCOD01003161             586 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 351388pyr ultra-conserved element
            locus uce-1820, sequence.
ACCESSION   KCOD01003161
VERSION     KCOD01003161.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 586)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 586)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..586
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="351388pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>586
                     /note="ultra-conserved element locus uce-1820"
BASE COUNT          197 a           98 c          115 g          176 t
ORIGIN      
        1 tgcagaagct ttctaaatta acaggaaaca ccatcacagc aggaaatgat gtaaacaaga
       61 taccattttg tcactctgaa tttaaaatac aatggactgc ccagttacta tcactcaata
      121 cagtggatag aataatagaa cgtaagagta caacctttct ggctaaggtc aaataattgt
      181 gattttctac agttaatgaa actttaatat cctctttcat taaaaattct cagaacgttg
      241 aacataagtc aacattccat ggagaagaag gtattatgca gtttgcatgt gtgcatatct
      301 gcatatcgga gcacaaaata ttgacatgat aattgcagtc aagcctgatt gaacagtggc
      361 ctctgggaat tcagctggtg ttgtaccaac tggatggctg ctcaggacac agtttgaaat
      421 gcaaggtgca agttagcact ttattcagca caggcaggca tcatttaaaa atccttaaac
      481 cctggtgatg tgcagatgtt aaagcagtct gttctgaagt gctgataaaa agatggtatt
      541 ttagatgaaa aatgtttgca aaattttttt tgtactactt tagtgt
//
LOCUS       KCOD01003162             488 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 351496pyr ultra-conserved element
            locus uce-5912, sequence.
ACCESSION   KCOD01003162
VERSION     KCOD01003162.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 488)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 488)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..488
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="351496pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>488
                     /note="ultra-conserved element locus uce-5912"
BASE COUNT          164 a           91 c           98 g          135 t
ORIGIN      
        1 taattctaga aacatttgaa atcatagata ttaatgtttt gaatgtttca gaaggtacta
       61 tgtggcatgt gaagaagaaa tagacctcgc acttctagta atgaaagtat ctggtatttg
      121 cagttctttt taacagattt tttctattta ataaaaatgc agctggaaca gcgccaccaa
      181 acttctcaca acgactacag agcatgactg caagacaagg aagtcaagtt cgacttgacg
      241 tgagagtgac tggaatccct acacctgtgg tgaagttcta tcgggatgga gtagaaatca
      301 aaagttcccc cgattttaaa attttacaag aaggagacct ttacagctta ataattgcag
      361 aagcatatcc tgaagactcc ggcacctatt ccgtaaacgc cacaaataat gtgggacgtg
      421 ctacttcaac agctgaattg ctaattcaag gtaacaaaaa tcagagttgt agtggtgcaa
      481 tatgcccc
//
LOCUS       KCOD01003163             689 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 351602pyr ultra-conserved element
            locus uce-1438, sequence.
ACCESSION   KCOD01003163
VERSION     KCOD01003163.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 689)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 689)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..689
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="351602pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>689
                     /note="ultra-conserved element locus uce-1438"
BASE COUNT          230 a           80 c          121 g          258 t
ORIGIN      
        1 agactgatct tagattgtta atgatctgtt gctcactcct ttgaattcaa ttctaaagga
       61 attctggtac gtggtgaagc agttaatgaa aaaattgtat ttttgtggtg ctttttatta
      121 atcatatggg ctcaagtcca gcaaagtatt gtgaatgtgc atgactttaa acatgttttc
      181 attattttgc tggatcagca ttgtgatttc aatgttattt aatactgaaa acaaatttta
      241 aactggcaat taagaaaact atgttcattt tgaagatttt agtataattt atctgttaga
      301 gtagggaggc cttacagact gacttcactt aaagaggatg tgtcacttat tgtcagtgtg
      361 gtatggactt tatttgctta aataccttca tttgtaaagt atgtctcact tgaaattgct
      421 ttgtatacat tttgtaaaaa tatttataaa atgttttgta aaaaaaaaag tataacaaat
      481 tgcagtttat tttgttatgt tggataaata ctgttaaaag acacaagtca gtaaatatat
      541 tgttaatcca tggataggaa atgtttagtt ggagattaca aattgaaaca accattgcaa
      601 tacagccaaa gatttgggaa aaaatgtcta tctgtgattt aaccaagttg aatatttaca
      661 tttccaaaag atgattggtc tcagtttta
//
LOCUS       KCOD01003164             344 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 351705pyr ultra-conserved element
            locus uce-3782, sequence.
ACCESSION   KCOD01003164
VERSION     KCOD01003164.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 344)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 344)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..344
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="351705pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>344
                     /note="ultra-conserved element locus uce-3782"
BASE COUNT          113 a           39 c           85 g          107 t
ORIGIN      
        1 aatggctaat gtgttgtata aaatgatttt tggtggcaga aactggatag gaagccaaga
       61 atactgcacc aacatttgag cttttctgtg agaggcgttg ccagcctcag gagggagcac
      121 tggataattt ataggttaac attttctttt tatgtgaata gcattttttc tcatttatag
      181 ttaattaggt taagcatgca tggggagtga gggaggaaag actttcagag agaatctaaa
      241 cgattagtag tttgaatgaa gtaaaagaat ctgctaaagg acgtagctct ggaattaaat
      301 atgttgctat aacaagtgta agtatcagat aggaatttta aagg
//
LOCUS       KCOD01003165             442 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 351809pyr ultra-conserved element
            locus uce-915, sequence.
ACCESSION   KCOD01003165
VERSION     KCOD01003165.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 442)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 442)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..442
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="351809pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>442
                     /note="ultra-conserved element locus uce-915"
BASE COUNT          163 a           69 c           74 g          136 t
ORIGIN      
        1 caacaaaagt ttctggttta tcatgtgatc aatagataca agtaccttca ttttttaaat
       61 tagtctaagg ctattttcct tttactgttg tataaacagg gaattgaagg gtaaaatagt
      121 taaaacttaa tgctatagtg ctaatgtggc ttttaaatca cgtcagcagc aatcactgca
      181 ttataattaa caatttattg aaccagcaat aaaatgaaca tcacattact tcttaaagca
      241 gcagaataaa atggctaata aatagcataa gccagacaaa ttgcagagta atagttaaga
      301 tttatagtgc gcagaaagat ggatgtgcta ttagtaggag ctccaatact tgataaaatt
      361 cagacatagt taccaggcat gtcagagttc acaagtctaa gtggtttatc caaatttcag
      421 ctcactggaa aatactcatt ac
//
LOCUS       KCOD01003166             606 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 352026pyr ultra-conserved element
            locus uce-4872, sequence.
ACCESSION   KCOD01003166
VERSION     KCOD01003166.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 606)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 606)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..606
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="352026pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>606
                     /note="ultra-conserved element locus uce-4872"
BASE COUNT          179 a          108 c          104 g          215 t
ORIGIN      
        1 acatttggga catttaacat atcaagctca aataaaaatg acacacagat cgttcacttc
       61 tgaagttgcc ttgtgttcag ttattggaac actccatctc tgtggtttcc aaaatattat
      121 aagtatatat cccagattaa actttctgtt ttcctcaagg tggtgttgct tttcagtcct
      181 caatggcttg gtttttacct aaagaatcag gtcctatcag caaaatcaaa ggcgattaca
      241 cagctcagta gtcatttagg atttctgtgg ctcaattaag catgtatagc atgccacagc
      301 cactgagact ctgtttattc agtgcaagtg ctctgtaatt tatttaaaat aatccatctt
      361 taacaaataa agaggccatt gactggccat tgctgcaggc atccatttaa atgctgcctt
      421 cttgatggtc tgttttgctg gtttaagtta aatacctgac aaaagtgatt cagtttttgg
      481 gaaataagat ttgcatgcat aatgtttatt ttattttaca ccagtaatca gttagaacat
      541 ctttttaaca gtttgaccat taaaaatgat taatgctatt cattttgata gcaactggtt
      601 gtgatt
//
LOCUS       KCOD01003167             468 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 352242pyr ultra-conserved element
            locus uce-2414, sequence.
ACCESSION   KCOD01003167
VERSION     KCOD01003167.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 468)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 468)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..468
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="352242pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>468
                     /note="ultra-conserved element locus uce-2414"
BASE COUNT          159 a           66 c           76 g          167 t
ORIGIN      
        1 tttgaaacat ttttataaca tccattttac tgtaaacaat tcattaaaat gacttgctaa
       61 gtcttaggca agtggatttt tgaaggttgc tcattttact tatccaccca aagtcaattt
      121 gagtatgaat atataacatt ttactcataa tagcaaacaa cttcagagaa gagacattta
      181 ttctggaggc agagattcaa actagacagc aatgatgcat tacaaatata taattatttg
      241 cactaatatt tgagcaggtg gaatggatta gtacatggtc aacattgcgc tgctgataac
      301 atgtattttt ctatattaat atgtactgtg caacatgtat taaaattgtc aataattcat
      361 tttaacagag atagcaatat ttatattgct gtgttctaca gacagcagag tgaattgtta
      421 aaaagctgag ctagatttat ttgttcccca gcatgtgtgt ttttaatt
//
LOCUS       KCOD01003168             481 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 352347pyr ultra-conserved element
            locus uce-6315, sequence.
ACCESSION   KCOD01003168
VERSION     KCOD01003168.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 481)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 481)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..481
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="352347pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>481
                     /note="ultra-conserved element locus uce-6315"
BASE COUNT          165 a           85 c           94 g          137 t
ORIGIN      
        1 aggtattaaa ccctctgggg aatgcaggca cagaggtaat aaacatattc gtttcattac
       61 aacatcttaa aaaatgtaaa aattctaaaa agccaactgt aagctgacct gcagccaaag
      121 tacacattaa ttatacagct taagtcaggc ggatgctcaa ggaaaagaga tataatgtta
      181 cacccagctg gatactttgt agttagcaca aatgtaatat aaagcgtacc agagtttgtc
      241 aagtgtctgt ctggattttc agttttcatt agtactataa ttaaaaccac attttcagct
      301 atattaccta taacaagaaa ggaatgagaa atgaggttgt caaggtcagt ctctttctgc
      361 tctttatcct gagtatctgc aggccacaag ctgttgaatt tggtgtaaac cagagtaata
      421 ggatggaatg ccacgttaca aacctttgtg gttgaaaaga caaactgatg aggtcacttc
      481 c
//
LOCUS       KCOD01003169             353 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 352454pyr ultra-conserved element
            locus uce-7045, sequence.
ACCESSION   KCOD01003169
VERSION     KCOD01003169.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 353)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 353)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..353
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="352454pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>353
                     /note="ultra-conserved element locus uce-7045"
BASE COUNT          114 a           77 c           59 g          103 t
ORIGIN      
        1 ataatttcaa attcttatca ttatacagtt aaaaacatcc acaattttat ttattggctg
       61 ctaacactac ctggacagag ggcagtgtta ttgcaaaccc ttgattctct taaagggccg
      121 ctgcagtgtg tcccgtaagg tgatacacaa gttctggttc gcacctgcga cccttgacca
      181 caagtaactg aacacgtact ccactgggcc cactcttcaa caccagattc acctgtattc
      241 gagacatgaa tatagacata agtattaatg acacactgaa gctcattatc atctactctt
      301 ataaataaat atttaaaagt ttatggagta aagcagctgt gaaaatgtgc aat
//
LOCUS       KCOD01003170             416 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 352566pyr ultra-conserved element
            locus uce-4020, sequence.
ACCESSION   KCOD01003170
VERSION     KCOD01003170.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 416)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 416)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..416
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="352566pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>416
                     /note="ultra-conserved element locus uce-4020"
BASE COUNT          141 a           80 c           87 g          108 t
ORIGIN      
        1 gagagtggag caagacctcc agaaaataaa cagggtgtac agtttcaaag gctacagaca
       61 cagacatttc attgttcaag ccaattatca gtggaaaata ataacaacag atggattcag
      121 agtcactgac ttttcatatg cacttcatct ctgcacaaca gatgatgaaa tgcgagagct
      181 atctcggaaa ggcaaaacat ctttcagtaa aagaactcta tactccagat ggggaccttc
      241 taaggcagct gattatcttc ttataatgtt gtaagataga cttactaaaa catttccaga
      301 actgatcaga tcagatgagc acaatggcag cattatgagg agtaagttgc tccggtctca
      361 gacttgtgac tggactactc agagattttg atggggtaat tccacatcaa gtactg
//
LOCUS       KCOD01003171             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 352676pyr ultra-conserved element
            locus uce-1265, sequence.
ACCESSION   KCOD01003171
VERSION     KCOD01003171.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="352676pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-1265"
BASE COUNT          202 a          106 c          101 g          193 t
ORIGIN      
        1 caaaatttaa attgtcttcc gagcatatcc gatcacattt acatttagtg tccaaaacaa
       61 gttgattgac accagtgcca gcactacaac gtcatacagc aacttcatgg tattctttga
      121 cagttctctc tgttccaccg aaaattacga aaggttctgc agagctttcc ttagcaagct
      181 gaagcttact agtcatttgt ggatgcacat aaaagctgct tatagcacag ctatggcgta
      241 agctattttc taagcaataa atggttcaag tcatctattt tgtcctgaaa tgctacctgt
      301 agttacagca ttgcttataa atggtcatag taaattcagc atcaaagaga atattacaga
      361 aaaagacagc agcagaagca ttagcattat ctagtattta tatatgttat caacataaca
      421 cagcagtaaa aggtttaaat gcatattaat gggtaccgtg tctaaaaatt actaaagtac
      481 ctatttagtg tattggatat ttttctcaag gagtgcttgc tgtgtctaaa cagcataatt
      541 agatatgtga cttagtacag ttaattccta ttgattaaat aacttattta tgtaccaaag
      601 ga
//
LOCUS       KCOD01003172             762 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 352785pyr ultra-conserved element
            locus uce-2120, sequence.
ACCESSION   KCOD01003172
VERSION     KCOD01003172.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 762)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 762)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..762
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="352785pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>762
                     /note="ultra-conserved element locus uce-2120"
BASE COUNT          235 a          130 c          151 g          246 t
ORIGIN      
        1 atacatcaca cgctacataa cgaaagcaag ggtagaagtt agaattgtaa cttcttttac
       61 attactaggc tgcttttact gcaaaactgt ttaaaataat ttcaaacgtt agagtaaatc
      121 tccagtaaat atttaaacta tgtataacta gtcacaaata aattaagctg attttatgca
      181 ttctctctaa ttagaagggc acagcatttg ttgaaacgtg attagtatta ttcattaagc
      241 aaaaaattct catttgtatc ttattatcac tattctgcat aaaccaacac aatttgtcat
      301 gaactccctc atttgctgta tcctcaaaaa gcagattatg cttatttttc atttggacag
      361 tggaaaatca agccaggtgt ttggcagcac cagagtgttc aggtgtaact gtgccagtga
      421 tggtacatta ctagcagcgt ggatgaagaa tgaggcatgg agaatcttgg gactgaggtg
      481 ccttgaggcc catcccttta gagtggtcct gctgatgaga caggtggtgt tgcataggac
      541 tgtttttgta aagtcagcct ttcaccttca actggaaatg agaggtgtaa tacctggaca
      601 tgtttgtgac taaagtctct acagttttgt attaaagttt tctaaagctg aaaaatgccc
      661 attgctgcag agaggtctct ctcactgtct gaaaggaatt ggcacaatat tgcatgggca
      721 gtattatgta tttatataca taaatattta catgtgacct tg
//
LOCUS       KCOD01003173             536 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 352895pyr ultra-conserved element
            locus uce-4940, sequence.
ACCESSION   KCOD01003173
VERSION     KCOD01003173.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 536)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 536)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..536
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="352895pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>536
                     /note="ultra-conserved element locus uce-4940"
BASE COUNT          170 a           93 c           99 g          174 t
ORIGIN      
        1 ccccttaagc cagacagtgt ctgaagaaga aaagctttac tttcttctaa ttttctcttt
       61 gggtcacttc cccagcagaa gaggcaagag gattcacccc ggttgatgga gtcagctgct
      121 gacaatacat taaaaattcc tttttatatt ctgcttagac acactgtaaa agaagaatgg
      181 atatcccgaa taattaaaat atgtttaatt tgcatggagc tcagggcatt gttctgacat
      241 caaacatcac tgtcaaccat atgtggaatt tcaactgcca agtgcttcat ttatgtgaaa
      301 attagcttaa gtgtacaaag aatgaaaaat ttatgattat ttcacatttt aataaatgca
      361 gtgctatgca ttaatttaga cttctaaaac aattttgaca gtgacaaggg aatccttcac
      421 agactaagtg ctgcagcgtg ctgcgtttca catgtcctgc ggaattatgt ggtggagtgt
      481 taaggcagtt agatttttat gtttttaaac aaagatatta tatgactata tcactt
//
LOCUS       KCOD01003174             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 353003pyr ultra-conserved element
            locus uce-576, sequence.
ACCESSION   KCOD01003174
VERSION     KCOD01003174.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="353003pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-576"
BASE COUNT          254 a          110 c          132 g          206 t
ORIGIN      
        1 tagttactct gtgcttagta ttttatttct gtgagaaaat gtatcaaaag ccaacagtaa
       61 aatagaagga gagaaaaaag ggaaaaatgt gtagaggcat acaagaaaga gcttgtggca
      121 tatgcatgag tgtaaaactt caagaaaaag ttaaattaat gaaggtagtt cacagtttaa
      181 aattaatttt tttcgcattt ccttttctca aaggttcctc ttcagtattc caaatataaa
      241 tggtggtggg attatttaga aaccaagtac attataacta aggcctatag caacctcact
      301 gagcagtgaa atttgttgtc tccctctgat cctcagatta tggagatgag gggaagaatg
      361 tacatcagta agattcccta ccgagatagc ttttcactct tttcagtaag aaaaagatca
      421 aagggaaaat agctaattaa cataccaaag gagacaaaac ccctagagct ttatcgttgt
      481 tgcaatccaa taataaacag ccaagtacaa aaaagattat ttgatagtga cacacagaat
      541 tgaaagcctt tgaaatgtca gcttctcaaa aaaatatttt tggaaggaat atccataatt
      601 atacagaata atgcttaagc attggggagt agctcttcac tcctgagagc ttgcttgtaa
      661 aactactgtg cttaagaaca acagcttggg ttgcctttat tt
//
LOCUS       KCOD01003175             358 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 353113pyr ultra-conserved element
            locus uce-1017, sequence.
ACCESSION   KCOD01003175
VERSION     KCOD01003175.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 358)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 358)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..358
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="353113pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>358
                     /note="ultra-conserved element locus uce-1017"
BASE COUNT           91 a          101 c          102 g           64 t
ORIGIN      
        1 catcacaagg aaaataaacc caaggtacaa acaaagtgcc ctcgcctccc gttctgtccg
       61 gggcaggggc tcaaggtcac gccggggatg cggagagggg cgcggggctg ccccgtcccg
      121 gggctggcgg aggaggcgag tgtggaagtt tatgagctca tcaggatggt tgtaccatta
      181 catcagaggc aattataaat ggccaagagc aggggatggg gagccaatca gatcacagat
      241 gggatgtcaa cctaagacca actgtctcct ggctttgaca gaaggatttt acctccataa
      301 ttcaaatccc aaacccaagc gatccgcact cgctgctccc atcgcccagc tccccgcc
//
LOCUS       KCOD01003176             452 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 353219pyr ultra-conserved element
            locus uce-5619, sequence.
ACCESSION   KCOD01003176
VERSION     KCOD01003176.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 452)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 452)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..452
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="353219pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>452
                     /note="ultra-conserved element locus uce-5619"
BASE COUNT          134 a           96 c           84 g          138 t
ORIGIN      
        1 gaaataaaaa cagatttaac ctacagacct ttggttaact tcttcctaaa ctaaatataa
       61 aatgttacct catcttgctc agattaaaag gggagactcc ccccttcacc acacgttccc
      121 ttattgagaa tctcttctga agagtctgca tataaaagac aatccagaga catctttgaa
      181 ggttctcttt caaagcgtct ctacttccct gagcgtctgg ggatttctgt tattaattga
      241 agttaatttt ctaggatatc agtttgccat gcacgtggga aagattgata gcctcttcga
      301 ttctcaagag tgttggaaat gacactgttc catcaccggg tgtcttcact tttatcatca
      361 caaatcaaat tataaacatc ggggcaacct tgctggaatc tggcttcggg agatttccat
      421 aagattaatt aggcggccaa agcaaagatg gt
//
LOCUS       KCOD01003177             513 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 353328pyr ultra-conserved element
            locus uce-6362, sequence.
ACCESSION   KCOD01003177
VERSION     KCOD01003177.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 513)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 513)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..513
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="353328pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>513
                     /note="ultra-conserved element locus uce-6362"
BASE COUNT          140 a           98 c          102 g          173 t
ORIGIN      
        1 atagctgttt gtctcacttt atttacttgg tattgggtat ttgtcaatgt catttcatat
       61 ctgcagaaaa ttcatacgtt ctatggaagt atgtatgtgt gtgagtgtgc tgaaggtcac
      121 atgactattt catcctattt ggtggagcag cttgactttt ttcccttgct tttggtgatg
      181 gttgtgagtg cagaagttga ttgacagatg catgccagaa acccccattc tccttttcaa
      241 agactacata tgatggattg cgatctttca gctcagcagg acacagggac catgcaagct
      301 gtaattggtc aggtatggag tcagccattt ctcaactccc cttttatttt tttttttcac
      361 aagggtctaa ccatatgatt cacataattc atatttacag taccatcttt ctatctgtat
      421 cttcagctac cagcgagtgt agtactgaaa gtgagaaagg caaaagaaac acaataatct
      481 ggccagggaa tcactagaaa aacctaaatt act
//
LOCUS       KCOD01003178             686 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 353432pyr ultra-conserved element
            locus uce-3191, sequence.
ACCESSION   KCOD01003178
VERSION     KCOD01003178.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 686)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="353432pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>686
                     /note="ultra-conserved element locus uce-3191"
BASE COUNT          224 a          108 c          126 g          228 t
ORIGIN      
        1 tcactcaagt gagcatgcat aaaggctacc tttaaaagca gaatgttgtt agcgtatggc
       61 ctgcttgggg aaagcaggct acctgtgtaa ttatttcctt agtgaaaact tctattgcat
      121 ttaattcaac gcaaaacatt ttctatattt catgtcatgg gtaggaatga aaatggagat
      181 agttcatcaa tgctgatatg tgatataaaa agagctgaga agccaagggt atgagagtgc
      241 ataaaaatgt tttgtgtcct gaccagtaca ttgcttattt tacaatcagc cccaattgtt
      301 cattcctccc atgcagaaga tactcacata ttcattttta aaagggcaaa tcaaccataa
      361 ttcagtttat aaactgtgaa gctggttgcg aatgtctgga tgaatattca ttagaatctc
      421 ttaatctgcc atcgactgtg attcattagg catatgtaaa tatcactcac tttaattgcc
      481 cctaaactga cttaacataa tattgtcatt agcaaattat tagttatttg tgtaactaat
      541 ggtacattat ggtgtacacg ttaaatcgcc aaatatatga ttacaattat gatgatgttt
      601 tatgcggggt gcaaactatt tgatgaaata taatagagcc aaatcaaatc tggtatgtta
      661 ataggacagt tgtggaactt tattat
//
LOCUS       KCOD01003179             522 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 353539pyr ultra-conserved element
            locus uce-264, sequence.
ACCESSION   KCOD01003179
VERSION     KCOD01003179.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 522)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 522)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="353539pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>522
                     /note="ultra-conserved element locus uce-264"
BASE COUNT          137 a           91 c          116 g          178 t
ORIGIN      
        1 tttttgtcat tttgttccct cagacttacg aggatgaaac tcgcactcct gggggtgcca
       61 ggcattttag atcttgcatt taggaggagc cgcgatgctt tttgcgtctg tttgtctgtc
      121 catctgtctg ctggtctata ataagctgtg cagcgagaca gcagcttact atctgtgtgt
      181 gtgaaattag ctaattggtg ttagcagcaa tattttcaca tgttttataa gcaaagtgca
      241 gcaaggtata taaatgtaga tatgatccag agacacacac cgcgcgcgca cgcaagcctg
      301 tcgctgctca tgcatagacg ctcagaagta attaatgtta ataagatttt aatgtgcttg
      361 tgagatcata atgaggagaa atgaatgctc tgattagaaa aaggtaactg tgtgtgtgtt
      421 ttggcttaga acaagatttc ccctcttttt tataaatcac aatttcagaa cttgtttgtg
      481 attgcatcaa tcggttttta ttttcaaatt agatgtctgt tt
//
LOCUS       KCOD01003180             610 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 353649pyr ultra-conserved element
            locus uce-3228, sequence.
ACCESSION   KCOD01003180
VERSION     KCOD01003180.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 610)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 610)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..610
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="353649pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>610
                     /note="ultra-conserved element locus uce-3228"
BASE COUNT          177 a          127 c          106 g          200 t
ORIGIN      
        1 tctaatcaat tccactaaac catttttcag attgtccatt tggatttttt tttaattcta
       61 tattatctgt gcagttatgt tatacactag tctagggaaa cttcatcaca gactgggaga
      121 aaaatatctg ttcaccttta cttgggctct atggcctgga tttgttgttc cttacaaata
      181 aggagcttct ggtgcagcaa cctgcacatg atgtctccct aataaattca catgacagtc
      241 atgaaacgct cctataatca gtgacatggg atgattttcc gctcctgaca agcccttgta
      301 ttgagtatga taacagttac tttgtcttca tccactgctg gagtataata tcaatccgtt
      361 tgatgatcca gcaaacgaag cccaacactt ctgtatcaat cttcatagag tgctgcctgt
      421 tgtctaacaa aaagcctgaa atgagatcat tcaatcactt tgctggctag ggtaggcttc
      481 tcttactgaa gtggttttaa ctccctgtca ctttctttcc ctttccttta cacaatgaag
      541 ccgggtaatc taattgaaat agaaatataa ttttagggca actttacaaa gcaaacaagg
      601 gagagaaaaa
//
LOCUS       KCOD01003181             528 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 353758pyr ultra-conserved element
            locus uce-220, sequence.
ACCESSION   KCOD01003181
VERSION     KCOD01003181.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 528)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 528)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..528
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="353758pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>528
                     /note="ultra-conserved element locus uce-220"
BASE COUNT          179 a          105 c           85 g          159 t
ORIGIN      
        1 agaagcccca ggatcatttt atattcactg gaagacagaa agaaatccaa aacctagtta
       61 aataaattgt tcatttattc ctttcctttt atgcaccaag atctacatgt ggtcattaat
      121 tataaagaga ctattatagc accatatttt cattcaatac gatgtcctgg tatatatcaa
      181 agaagtccca taattaaaac agaagggcca caatgacaat taaaattaca atctatatgg
      241 ggaaagaaag tacagttctg caatttttca ccctgtcact gtcagcaccg ggggatattc
      301 cagtcacgtc tcttgtaaag cagcctaaat tcttcttcac caatgcaacc tcaaaagcat
      361 tatcagcacc taagcaaaag cctatgcaag tataatttaa taccaagcca cagtttgcaa
      421 gtaatagcat ataaagtgat atttaagtgg tgttttaagc acacttctga tggctacagc
      481 cgccttttac tggtaaatgc gttttccttt gagtagtgat tatgagtc
//
LOCUS       KCOD01003182             555 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 353865pyr ultra-conserved element
            locus uce-7242, sequence.
ACCESSION   KCOD01003182
VERSION     KCOD01003182.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 555)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 555)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..555
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="353865pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>555
                     /note="ultra-conserved element locus uce-7242"
BASE COUNT          174 a           97 c          101 g          183 t
ORIGIN      
        1 aaaaaaggaa ggaaaagaaa tggatggcac tttaaaattc tgatacagca cagaattatg
       61 attttgcatc ccctgtctcc tccagagccg tactaagaat taataagcag gcagattgaa
      121 attctaagcc aaaatcagtc tcgagtcact aactttggag tgcttaaagt ctttctttta
      181 ttgagcataa actgtaatgg atctaattta tttcagacat ctagggtcat tagcatatgg
      241 aaagtctttt tatccttatc cctgccatat gctttaattc ccaggacatg ttcggtgagg
      301 ctctaaacag tttttatatt taattataat agcttgctgt tgatctaata gagctaaagg
      361 agacctgttg tcactggtca gaggttaaat actgtttcgt ggagcagtct atgcacaaag
      421 ccccttctct gtatttcctt ggaattattt tatcctgtct ttaatacgtg ttcaacagga
      481 attccttagg gagcaaagaa tttagcaaac agtaaactga gtggtttctc tttgaaatta
      541 ttacaaaatc aataa
//
LOCUS       KCOD01003183             672 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 353975pyr ultra-conserved element
            locus uce-1946, sequence.
ACCESSION   KCOD01003183
VERSION     KCOD01003183.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 672)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 672)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..672
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="353975pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>672
                     /note="ultra-conserved element locus uce-1946"
BASE COUNT          179 a          132 c          138 g          223 t
ORIGIN      
        1 cctctggttc ccctgctctt ctgataaatt cacaaaagct gtttacttga agctctgtgc
       61 acttgctatg gagtttcctg gccccagtgg tctctttaca ttgttcaagg tgaattgttg
      121 tggtgttcat gatgtaccct tctcctctct cattatttta atttactctc cttacgttgt
      181 ggcatcccag ctatgttgaa gccccagagg gcaccttgtt cttctaagaa ctccaaactt
      241 tttttactgg ctgcagaata aatgctgcct gaatgagtaa tgattagaaa gcttttggaa
      301 ctgtattacc ataggtgaca gctctgaaga gataggcagg taatgttaag aggcagggat
      361 aagaggctat gacattatgt ctggagggtt aaggactcac agtcaaagct tgaactgcta
      421 ttactggatc aatacttctc agttcaacac ttatcttgac tactggttag aggcttttgt
      481 agatatgaac actgagagag caaaataaaa ctgaaaaaaa tgattgttgc tgttcactta
      541 catgtggatt gctgcagtta tttaggtttc agatccacaa tttttttcgt ggggcaaact
      601 ccaatgacct gaaagcagga tgaaaccaac aagttatgaa ttatattgca ttttccttgt
      661 ccttttcctt ca
//
LOCUS       KCOD01003184             582 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 354083pyr ultra-conserved element
            locus uce-4413, sequence.
ACCESSION   KCOD01003184
VERSION     KCOD01003184.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 582)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="354083pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>582
                     /note="ultra-conserved element locus uce-4413"
BASE COUNT          220 a           87 c          118 g          157 t
ORIGIN      
        1 agagaggaat ctctttacaa ggtgtttgat ttcaatacag ttttaaacct tagaacagaa
       61 tcaacagcat attttaatca ggtacctttt caagtattca ctgcatgaag gcctagttgc
      121 ctgagggata tgaaataata ctaaaaactt tataatcatt cattgattta gttttgagca
      181 tagtatatca tttgaatcca atgggaacat aaagagctat ttgtgaggtc aaccacagta
      241 cagacagagg ctgacatgat atcgatggca aggtggaaag aaattgccaa atacagcaga
      301 tcaatacctc gtttcactgt tacacccttc tggagacata aaatatatat ctgtacagct
      361 acgaaaataa taataatgaa agtgggagat aaatgcttcc ctcaaggtaa actatttgat
      421 tagctgaggg caaaggtgac aagagcagtt acactaaagt aactttacag tcttaaataa
      481 aaatggtggg aagagtagca gataaaagga aaaatgaagc tgaacaagtt ctaggagata
      541 aaaacgtact tttagaaatt ggggtagcac gtatacaaag gc
//
LOCUS       KCOD01003185             487 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 354191pyr ultra-conserved element
            locus uce-7908, sequence.
ACCESSION   KCOD01003185
VERSION     KCOD01003185.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 487)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 487)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..487
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="354191pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>487
                     /note="ultra-conserved element locus uce-7908"
BASE COUNT          150 a           92 c           92 g          153 t
ORIGIN      
        1 ttttacaaca aagctttgtt taaaatagaa gttaaagctg cgaagattta tgacatgttg
       61 acataactga tggtaaagga gttggctgaa gctaagggtg tgaaggtcca aatgagaaca
      121 tctgcattaa gaagctaatt ctcttaaaca tactgatcaa aatattaatg ctacatgtaa
      181 acacaagtgc tttatctgac agtgatttac atttggaacg acctaatcca actgtgctct
      241 gcatctttat tcattaccag cagcctttac ttaacacttc atgcccgctt gcacaggtgg
      301 acaatctact cagagtgact attgtgttta tgttattttt tcataagcag ggtttgaaat
      361 ttgtcaaact gcatcattgt ttaactatgt gccagtcaaa gggaaattgc cagatggagc
      421 ggctttcccc taaccttgct ccaggcaatg aaattacaca taggccacag tcttatgtca
      481 agtcttt
//
LOCUS       KCOD01003186             647 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 354299pyr ultra-conserved element
            locus uce-2994, sequence.
ACCESSION   KCOD01003186
VERSION     KCOD01003186.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 647)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 647)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..647
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="354299pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>647
                     /note="ultra-conserved element locus uce-2994"
BASE COUNT          156 a          139 c          157 g          195 t
ORIGIN      
        1 ctgggaaagc tattgaagtt acgtagcatc taggtgactc tttgagttcc tggtcttcta
       61 ctttgtccat tcctctgaga atctacaggc gtgaccactc accagtcaga gagagaagat
      121 gccgaagtaa acctccacca tgtgctttct tgtatcctat ttctcttcat tcatgggtct
      181 tctttttctc ttgataggac cagagggctg taacctgttt atctaccatc tgccccagga
      241 gtttggggat gctgagctga tgcagatgtt cctgcctttc ggtaatgtca tctcctcgaa
      301 agtgtttgtg gatcgggcga caaaccaaag taaatgcttt ggtgggtaaa gataacaaaa
      361 caattagatt catccaggaa agggctttct ctgaatactt tacctttcaa actgctttct
      421 ttctgcttaa gctttatgat ttcctgtcaa tactttcccc cttccctctt tctctcctga
      481 ttgtctcatg ctcagagttg tgtgcgctgc ttagaggtga aggtttggca tctcacaagc
      541 agcaagttgc tgcagacacc ggtggggtca gaaaataaag gggaggtggg gagggtaaaa
      601 gattaaagca cctggagcaa aatggagggg gctgggcata ggtgaaa
//
LOCUS       KCOD01003187             745 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 354413pyr ultra-conserved element
            locus uce-233, sequence.
ACCESSION   KCOD01003187
VERSION     KCOD01003187.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 745)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 745)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..745
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="354413pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>745
                     /note="ultra-conserved element locus uce-233"
BASE COUNT          186 a          157 c          159 g          243 t
ORIGIN      
        1 ttgtattgta ttttatttta ctttatcagt tgtggtcgat aatgtcatgc agatgattat
       61 tccttaaaag ctaagttgac aatagcttgt atcaggagac gttctatctt cttagagtcc
      121 cttgcaaatg caaaactaga tgggtgtttt tttaaaggaa ttgcatttca ttatgcagtc
      181 ttaggtgaat tttcatgttt aagaagccag aatacaagag agtgctatat tagtgtatta
      241 ttctcacaac aaacaagcca ctgttctgtt gctacctgct tggccattgt tcccaattgt
      301 gtatgctttg cagtggtatt tggatggttt cctgctctct gccagcacaa aaaaggcatt
      361 tctgttacaa tggcccctaa ccacacaatg acggcattaa ggatttattt ggaggtttca
      421 ttattttctc ctcttttgtt ccttccagga tgtcttccaa gcgaccagcc tctccgtatg
      481 gggaagcaga tggagaggta gccatggtga caagcagaca gaaagtggga gaagaggaga
      541 gtgacgggct cccagccttt caccttccct tgcatgtgag ttttcccaac aagcctcact
      601 ctgaggaatt tcagccagtt tctctgctga cgcaagagaa ctgtggccat aggactccca
      661 cttctcagca caacacaatg gtaggtttgc ttatggtcta ttgtgcttac atccattctt
      721 tgaattctgc ctctttggca tccag
//
LOCUS       KCOD01003188             660 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 354524pyr ultra-conserved element
            locus uce-7064, sequence.
ACCESSION   KCOD01003188
VERSION     KCOD01003188.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 660)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 660)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="354524pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>660
                     /note="ultra-conserved element locus uce-7064"
BASE COUNT          177 a          122 c          162 g          199 t
ORIGIN      
        1 tttttcaaat gttttttctg taatgggcta tacttgttgc tgtttttgca gggcttaata
       61 tggtttaatt tggggtgtcg tttcacctgt aatgataatc aaggatgttg gaggcagaga
      121 acaggacaca gaactgagct aacaacactc tgcagagaga tttttctcga tctccatcag
      181 gacacctttt aagacagcat tgctgcttca ccaaacttcc tcctaagtga gagaagtagg
      241 gataactctt ggaaaaagtt ttgaggctag tgacaaaata tgtttgtctt tcagatcccc
      301 agctcaaggg tatagtgacc aggttatatt gcaggcaagg ctactacttg caaatgcacc
      361 ccgatggaag tctcgatgga accaaggatg acagcagtaa ttctagtaag tgactgcccc
      421 aggggaatgt gttaatcgca cacgcagatc gcatcgctcg aatgtgtatg cacaggcacc
      481 atgttattgc ctttggaggg gttctgaatg tgttttgtat ctgtttgaca ccagcatggc
      541 tcgtgcagga cattggccta aatgttttgc ctctgaaggg gaaggcataa gtgctcatgc
      601 ttaggaggga gatatttagg ccaatgattg tcttctggta attttatgta aaattacaat
//
LOCUS       KCOD01003189             517 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 354632pyr ultra-conserved element
            locus uce-4977, sequence.
ACCESSION   KCOD01003189
VERSION     KCOD01003189.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 517)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 517)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..517
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="354632pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>517
                     /note="ultra-conserved element locus uce-4977"
BASE COUNT          147 a           91 c           82 g          197 t
ORIGIN      
        1 gtattcaaca tctccaattt taaagtttaa atagatctat actttcccca aggacttatg
       61 tgcaaactaa tattaagatt aaaatctttt atgtttgttc tgtagcttga aacaaaaaac
      121 tagtgcatag tctgttttat cccactggct ctctaaggtt caggtattaa cataaataca
      181 gcccattaac acttgttcct ctctgtcagg acataaatta agtctgcagg tgttccatga
      241 agctttaccc ttggtactaa ttaagccttg ataattaggt ttgttaaatt caggccttta
      301 agcttatatt ccctctttgg gttgccaaaa tggggatttg caatatacag ggctttttgc
      361 tggttttcta cttttttttg attttgtttt caacaaaact gcagttgtaa taaactctcc
      421 tttacttaga tggttaaaga ttcaaaacct gtgaagaact tggatatcag cttatattta
      481 catcagaaca ttttcttttg ctggcttttt tggcaga
//
LOCUS       KCOD01003190             639 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 354740pyr ultra-conserved element
            locus uce-876, sequence.
ACCESSION   KCOD01003190
VERSION     KCOD01003190.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 639)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 639)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..639
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="354740pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>639
                     /note="ultra-conserved element locus uce-876"
BASE COUNT          204 a          116 c          141 g          178 t
ORIGIN      
        1 tttttgatac tatgaaaatc ctgcaatgga ttaaaagaac tttttcttct ttaatcggaa
       61 gattaatgag ggaaagaacc ttaatattca gcttttattt taccaaattt caggctagac
      121 tagtctggaa gaaaagacag ttcatatatt agaaagtgaa acatgaaaca gatcttagtg
      181 caatgcagat aaggttttta tgagcacgta agagctacag tgtatataca cagctatgca
      241 cggaaggttt cttaccataa attgaacatt gtcaaatcca ttagccagca agtggttttc
      301 atactgaggt agcccaatat tttccaacca ttgtcccact gtctggacag ggcatcgggg
      361 tcctgtagga gggtgaagag ggaggcgttt aagcaacgaa taaccatcca ctggataata
      421 gcggtagtcc tgggctgaga ggtggcattg ccacatcgtg ttcctggaaa agttggtatc
      481 aaacgagccc gccagcttga cagattaatg ttttcagcaa gcagaaaagt cagaagtaaa
      541 acatagtttt cagggcagta tataacgcaa gatctgatcg cagctctaca tttcctggtt
      601 attaatcttt actacagacc agtacgtcat acagtaggg
//
LOCUS       KCOD01003191             316 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 354850pyr ultra-conserved element
            locus uce-459, sequence.
ACCESSION   KCOD01003191
VERSION     KCOD01003191.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 316)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 316)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..316
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="354850pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>316
                     /note="ultra-conserved element locus uce-459"
BASE COUNT          107 a           61 c           47 g          101 t
ORIGIN      
        1 ttcccacaag gccattttac ataatttatt aacaagatca ttttactttc tgatttaaaa
       61 gatttgtaac tataagctcc tgtgttttcc ctgaacaagt cacaatgcac acagtaggca
      121 aagtgttaaa gggctaggaa aatattattt catcactcct gttccattag aattcacttg
      181 ggtggctgag aaaatggttt atggattaga gagagaagaa caagctaaaa catttcatac
      241 cttcatctct gataaattcc ccaaactcat tctttgcatc tgagccataa ataacaacca
      301 tgctttttgc taaaaa
//
LOCUS       KCOD01003192             427 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 354959pyr ultra-conserved element
            locus uce-2282, sequence.
ACCESSION   KCOD01003192
VERSION     KCOD01003192.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 427)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 427)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..427
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="354959pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>427
                     /note="ultra-conserved element locus uce-2282"
BASE COUNT          132 a           84 c           84 g          127 t
ORIGIN      
        1 ccagctcagc cttggaaatc cttgtaacag attctgattt gctcatttct cctgctttca
       61 tttttctcct gtcttgggtg aagggtttgt gtttaataac atcatttgca tcagtgtgtc
      121 ccaacagacc aaggtaccag ggctgggaga gattagcatg gtaatctcat tctgatggat
      181 aaaattagca aagatattcc cctgaacaga gggctgccat tggtgagctg ctgtgcttag
      241 aatcaattac taaattactt tgagctctaa gtcgacagta acagaaaaaa attggcttcg
      301 accgaagtga aataagataa aaaatatgcg atcattaaat ctctcactac tattcgcgaa
      361 tgtgactcac aagaactgca caaaaaataa ggcagaattt aatttttaac agtggtccct
      421 gtcatca
//
LOCUS       KCOD01003193             766 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 355068pyr ultra-conserved element
            locus uce-4292, sequence.
ACCESSION   KCOD01003193
VERSION     KCOD01003193.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 766)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 766)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..766
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="355068pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>766
                     /note="ultra-conserved element locus uce-4292"
BASE COUNT          247 a          152 c          113 g          254 t
ORIGIN      
        1 attttcatat ttcctctttc taccagttaa acagctcaaa tttctccact cccagttttg
       61 aataacacag aatactggct ttgtaccctt gggctactcg gatttaatat caaattctta
      121 ccttgcacaa ggtcagagaa aaaaataaag cttataaaat tggactcaaa tgaagaatga
      181 gtttctatct tttaatacta ccaaacaatc tgcaaattat ttaaattaag acaaccagcc
      241 ctccaacatc tgcaagcaaa atgcttaaat gccaaacgca actttactgg cataagaaaa
      301 taataagtgg agttcaattt gtgtcagcat agctcaggaa aataagatat catgtcttgc
      361 tgtctgcttg atgtcagctt ctcagattca aaccctaatg cctcatctta ggctgtcctt
      421 actggaggct gccaaatagc aaggttcagc cagagttcat gcagctacta caaaataggc
      481 ttctcctttt tcaatcatta tgaaccttct gctttatatt gtacacactt gattatatct
      541 atccttgaaa tgtatacaac tctattagcc tcttctccta ttcttttaac atactgaaat
      601 tcctttctgt gcttagtttg ttttatgact tacagaatta ggcttttaaa ctttcactac
      661 acagagaaga ttgagttgtg cgattggtta caaggagaaa acaaaggaat gggaatttat
      721 attgatgcca aaagtatgaa tttttgccat ttctactaaa atatta
//
LOCUS       KCOD01003194             776 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 355180pyr ultra-conserved element
            locus uce-1780, sequence.
ACCESSION   KCOD01003194
VERSION     KCOD01003194.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 776)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 776)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..776
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="355180pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>776
                     /note="ultra-conserved element locus uce-1780"
BASE COUNT          224 a          176 c          148 g          228 t
ORIGIN      
        1 aaaacttggt ttgagccaag attccacttt tattaaaaca ctccaacagg ctagccttcc
       61 ctggtgagaa caatatttgc tttctgatag gctggatttc catacctttt ctttcacgcg
      121 tgtgccatga tgagaagtct taaaacaaac ggcgttatcc ccagctgcta agttctgaca
      181 tgcactttaa acaagtaaac cctgggatgt ggcaggctgt gaaggaaggg agagcaaaac
      241 tggcttacgt gttgcactga tcacagaatt atcatctgct atcacacatt tgccattaga
      301 cccagctgct gccaacctga ccggtgcatt tcttcaagct aagctaacaa agcacttatt
      361 tgttatccag ggaactacct ctaatagact tccagtgaaa taatatttgc tttccaaccc
      421 tactttgaat cccactcact ttgttaaaaa gattgcctct ggctgtctcc actggtctaa
      481 tctaatagtt tctagtttgt acaagcaaag cgctttcagc caactatata aataacttaa
      541 agagaagaag acacttttac agcgctctgt gccgggtgct atagaacatg acagattagt
      601 aaatgacgcc tcagtggagc tcatctggga acctctgtca gttgaatatg agcaattaca
      661 atattgtatt tgggctgaaa gggttgtctg tcttcttaca aaaaggctaa caagaaaaat
      721 aattcctgtc ttgcttctcc tgtgcatgaa actgatctaa gtggctctca cccctt
//
LOCUS       KCOD01003195             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 355287pyr ultra-conserved element
            locus uce-2238, sequence.
ACCESSION   KCOD01003195
VERSION     KCOD01003195.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="355287pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-2238"
BASE COUNT          187 a          120 c          118 g          215 t
ORIGIN      
        1 tttctttcta atttctaaag aaatctcata tttttgctgt ttaatcagtt cttctgggtc
       61 atctgagata aatacatatg tataaatgta cctttacact tcagaggaaa gaagctcttg
      121 tatcacaagc aatgtttttc tggtacagtt aacttatttc tgtctcctta aactagtttg
      181 tctttatgct ttgaatgcta cagtaatttc tttaatcaaa ttgatggaag tccctttccc
      241 agcccacact gaaaccaatt tattggtcat gatacgccgg ctatgttgct aacagtcgta
      301 acgaactgtc aggcaatatc gcagtgcagc taatttgaag tcattaggtg tgcagcgttc
      361 aggcaacaat ttgttacagt ggttaggaac acagctgaca tttctgaatg gctttgttca
      421 gagcagttct agatgagccc aagcaaattg taaactaatt taaacatcac tctgtattat
      481 agtagctact ttgtcttaca ctggttgcta ataaagcacc ccaaattaag tcagaatgag
      541 ttatgtaggt gagtttgagt ttcatctttg gaagatacct agatcacctt aaccaaaata
      601 gagtagctct cagtcatgct ccgtagcagt tgcaggagaa
//
LOCUS       KCOD01003196             651 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 355397pyr ultra-conserved element
            locus uce-6671, sequence.
ACCESSION   KCOD01003196
VERSION     KCOD01003196.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 651)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 651)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..651
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="355397pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>651
                     /note="ultra-conserved element locus uce-6671"
BASE COUNT          219 a          124 c          110 g          198 t
ORIGIN      
        1 aaatgaacag cagaggttta caggtaccag gatgttacag gagcagtttt atcctgacaa
       61 aagcaaatat acctaaccac tctttaagat ctaggaagga acagaaatac aacagagagg
      121 tgatttgaca agtcacagaa ccacaaagat cattcctcta acatttgaga aaatgaaacc
      181 cacttggtac tccttcatca ccatgcatgc accctcaatt aaagcagtgc ccctgatagc
      241 aggcagtata atctgcattt tatttcactc atgagcaaaa taacaagtta ctcaggcctg
      301 cggcactcat gagtgatatg ggccgtgtaa tatcctctcc attgagtttc ctattattaa
      361 gtttgaaata aagagttcaa aattaactgt gacaatgatt ttatctagtg ttggcatcac
      421 cattagcttc tgcagtttac tgctaataaa actttaaatt tgctattact tgtaataacc
      481 tttttgccac cttagctgta gaaattagac taagaacccg gccaaaacat ggctaatgac
      541 attttctatt tgcatggaag aattgactag aaataatggc tgttatttat aaagtgttaa
      601 tacaataaat ttcagatttc agctgattaa tttgaagcac ttgcttcttt t
//
LOCUS       KCOD01003197             479 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 355501pyr ultra-conserved element
            locus uce-5904, sequence.
ACCESSION   KCOD01003197
VERSION     KCOD01003197.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 479)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 479)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..479
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="355501pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>479
                     /note="ultra-conserved element locus uce-5904"
BASE COUNT          163 a           71 c           93 g          152 t
ORIGIN      
        1 gcacacagtg gggaatgagc ataaaaaatg agggggaaaa acccatctac tttgcagcta
       61 tattcattaa ttaaaagaag attgttaaac taaatttgga cttctttaat tgtgtttacc
      121 caaaagcctt ttcttcctaa tttaaatagc ataaacatct ggactaaagc aatattagaa
      181 tcatggcagt agtcaagcaa atcttgtgga aaataatgaa attagatccc tggtgttgtg
      241 acagagtaag ggcaggatac atcagttcga tgttaataaa atttccatga atgactgaat
      301 acaattaaga aattgtcagt tgcggcaatg aacttttgta gctcatagat gtttgcatca
      361 tttgattatg ctggcaattt aaaattgttt gttagtgtct gtgttgggat attaattatg
      421 acctttatta cagcccacaa ttaaaccagt catatagcaa caagcagcct gtgttgtgg
//
LOCUS       KCOD01003198             635 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 355613pyr ultra-conserved element
            locus uce-3263, sequence.
ACCESSION   KCOD01003198
VERSION     KCOD01003198.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 635)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 635)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..635
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="355613pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>635
                     /note="ultra-conserved element locus uce-3263"
BASE COUNT          164 a          140 c          155 g          176 t
ORIGIN      
        1 ctttgctgta ataagaaaca gacataaagt cccccttgtc acaacaaccc tcatgttttt
       61 atttttcctc ctttgaaatt gatgcagtct gggcaataga tgcagtctga ccctttggat
      121 gtaatttttt tgacaacccc taagagcccc ggggacaaaa agcgttggag gacctgaaac
      181 ttttacctga gcccaggttc tccggcgctt cacaaccaaa tggggctaca gagaagcgtc
      241 taagccagct cacagagcga gcgtgtgtgg ggacttctcg ctgccacgga cccttgatgc
      301 atgctccccg cgctccagtg gtcccgtgtc agagggcgga gttttcgaaa ggaggccgcc
      361 aaaaataaaa ggcaaagaga cgggatcggc tgcagcggtt tcccacagga ggagggagtg
      421 tgcatcggtc tggtaacaaa cagagaatgt ttctctcttt aaaatctgtg ttttatcttg
      481 gatattttca gaatattctc gttaaaatgc agattttaaa ttctgttagg gcactttaga
      541 acggtgcatt tgaaaatata gcaagtaggt gcttttgggt gctttcactg aagcgttgca
      601 ctaatattta ctgaggttct gtcccataag tttac
//
LOCUS       KCOD01003199             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 355724pyr ultra-conserved element
            locus uce-7741, sequence.
ACCESSION   KCOD01003199
VERSION     KCOD01003199.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="355724pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-7741"
BASE COUNT          213 a          116 c          105 g          200 t
ORIGIN      
        1 taatgacagg ttaagcacac ctgaaattct gcatcccagc ggcgttcgcg gtagccaatg
       61 ctcaggggca acggaataaa acaaagcagg tgagaaatac aaaaatctat gtagcatgaa
      121 atatctctaa gagatttgtt tagtgaaatt aactagtagt ttaatagaaa aaagcttgat
      181 gtatgagagc gctccaattt cttcatagaa attaacattt caatcctgtt tttatctaga
      241 agtcattaaa ctgtgcaaca tgaattattg gaactgtagc agagaattaa ctctattcat
      301 caagtaagtc caaacagttt agagtgcatc tgtaatgaaa aaatagctcc acatttctat
      361 ctcttctcat taaagtaaac cagttttccc tctctcagta tataaaactg tcttctcctc
      421 atgtaattta tattaccata agccagctca cattctaaac tattacacgc ctccaattaa
      481 tttttgcagc ttttgcctga aaatttaatg agatagtagt gtatgaacct gctgactcca
      541 gattacatgt gtgcttccaa tattaatgtt ggcataataa tctgatacat acttgatgag
      601 agctttccac tattgtgaga gtagttaagg caat
//
LOCUS       KCOD01003200             433 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 355836pyr ultra-conserved element
            locus uce-3810, sequence.
ACCESSION   KCOD01003200
VERSION     KCOD01003200.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 433)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 433)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..433
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="355836pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>433
                     /note="ultra-conserved element locus uce-3810"
BASE COUNT          115 a           98 c           86 g          134 t
ORIGIN      
        1 gcagtcctca tcctctcctt cttcgacagg ctttgtgctg ggtgaagagc ctgcttctgc
       61 gtggggacaa ggtgtggctg atgcatccca gataaaccct cacacaaaaa ggcactgtgt
      121 cactgaatgg gattccagtg tagctcttta atttcatctc ttggaaatgt ttctcctctt
      181 tcatccaact gcctttatct taacttctga tctgaggaaa gcagcagcct ttcaaattga
      241 acaaaccgtg tttcaaatag gcgcttctgc ttgtgacaag atgtacctca ttttctctgc
      301 aagccctcag caaggtcaca cctttttaat ttattttctg taagaaaaat ctagttgcat
      361 gatagaacaa ggccagatct agctagaggt catttcttga actagttata aagtagaata
      421 ggattagaac cat
//
LOCUS       KCOD01003201             669 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 355946pyr ultra-conserved element
            locus uce-3470, sequence.
ACCESSION   KCOD01003201
VERSION     KCOD01003201.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 669)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 669)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..669
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="355946pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>669
                     /note="ultra-conserved element locus uce-3470"
BASE COUNT          214 a          137 c          124 g          194 t
ORIGIN      
        1 tttcttgcac agcttcccaa caaggtccca gccacgtgag ttgtccatga acctgtacac
       61 aaaccccctt aaccatggaa tgtaggtacc aaatgaaata tacttggggc accttccttg
      121 gggtttgaac tgggatgttt atccaaccta cctgaggcag tcaccaggag aaaaaggaat
      181 aataataaaa ggttgattaa ttatgtgcaa taactgggac agcatatcat gaaaattcca
      241 ttcttgttta ctcagctaat tcacttttta tgagtgttta ggctttaaag caaaacaaag
      301 cactaattac ccaattaacg agcaattaag ttactgcagc ctaatagcct gtacagtggc
      361 tgcctttatg agtctgatgg tgagttagag acccattaaa caaatttata cacagctgta
      421 gcaaacatta catttccaga gatgttacat tacatgctaa tattttcaca gccttgaaac
      481 atcattcact ggtttagtga atagtttgcc agtttactca gccgagctca aaggcaaggc
      541 gctgtatcag cagctacaac ccagggatgg atgaggatct ctgtatttca aagccttctt
      601 gaaaaaccag gtgactttta accaaggtga gtaacattta cattaaaact tgaattttac
      661 cttaattta
//
LOCUS       KCOD01003202             778 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 356056pyr ultra-conserved element
            locus uce-6730, sequence.
ACCESSION   KCOD01003202
VERSION     KCOD01003202.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 778)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 778)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..778
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="356056pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>778
                     /note="ultra-conserved element locus uce-6730"
BASE COUNT          200 a          194 c          160 g          224 t
ORIGIN      
        1 aacctaaaga taaaagcaga cgcagttgga taaatgaaaa cagtttgtaa atgtgtatgt
       61 gtgtttcata tatgtcttca cataaacaca tgtacataca aatttatcag attacatctg
      121 cttttacctt taaattttta tgaacacagg catatggcac attttcctgc cttggatttt
      181 ttgtctgcac agacaggctg gcttggcact ccatgagcat acacagcttt aagtatttag
      241 ctgagaaact ctgttggaaa ttagagcatc cgtgcttgca gagctctggg tgatttgacc
      301 tcccaggggg tcccccgtct ggcccctggc tcaccatgcc atgaatacat ttccatccat
      361 ctccagcccc catcacctag gcagctaatt cctttgagcc ccctccgcct tattaaagtc
      421 acagatcact ttaccaagct taatactgtc agggccagca gagcaagagt tcagacaggc
      481 tcaccacaat cccagctttc attagggtgg ggtccttctc gtgttttgat ctgcacaact
      541 cctagcaatg agctgtaggg tcgcctccag attccttcag taaacccttg gcatggatac
      601 aagtgccgtc acagctgctg caaaacctgc ttccaaaggc agcagcgctg cctgtaatag
      661 gaaaggactt gcggcacact gaaagtattt ttcatcagag gggtgtgagg ctaatttttt
      721 atttggagag cacttttccc ctctacagtc tgttttgcct cccctgttat gaaatatg
//
LOCUS       KCOD01003203             653 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 356166pyr ultra-conserved element
            locus uce-6085, sequence.
ACCESSION   KCOD01003203
VERSION     KCOD01003203.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 653)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 653)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="356166pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>653
                     /note="ultra-conserved element locus uce-6085"
BASE COUNT          212 a          128 c          108 g          205 t
ORIGIN      
        1 aaaaaaaaaa aaaaagtttg tgctgagagg gttaaaccta tttaaggggt taaatatgca
       61 attactgctg actaaaacca aagagacata tagataaata gaagaaatga agtccccagg
      121 ttccattcag aagccttcat cacattacta ccagacagaa aactctttaa gtaccatttt
      181 cagatgttaa atcattgttc gtgcagcaca tattctcact attcctgggg gaacaatatc
      241 tgaagacagc gtgctaacaa atgcaatcca gtaaacaggc atttttcctc ttgttgttag
      301 tacctttgtg ttccagctcc cagctctgtc atccatgcct tctctctgct ttgaagttaa
      361 agtactgaat gagcgttgtc atctattatc cagagtgtgc atgtagatta taaataagaa
      421 ataaaagtga ctttcagtac actgcttttg cattagcaag ttgccttctc tgttacctcc
      481 tctgtccttc atactttgct accaacatta tattaaaaat ctgactttaa gtgtttcttc
      541 tagaatgcta taaaatatgt acacagtgga gacagaagtt ttattgaaac aaacaagtcc
      601 agcagtttaa ccaggttcat gagttcagct tcaatagact gtttaaccct tat
//
LOCUS       KCOD01003204             794 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 356277pyr ultra-conserved element
            locus uce-5178, sequence.
ACCESSION   KCOD01003204
VERSION     KCOD01003204.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 794)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 794)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..794
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="356277pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>794
                     /note="ultra-conserved element locus uce-5178"
BASE COUNT          244 a          160 c          156 g          234 t
ORIGIN      
        1 aggggccttc atctgcatgc aaaattccta ttgacatcac tgggagggcc acaggcagat
       61 ggagagtact ttgtaaacct tacaatgttg taggagaaag gcacagaatt tgcagtccaa
      121 aaaagtgagc agctttatct aatactggtc tttaaacatg gagtttgaat aacagttttc
      181 ctagtaataa caaccctctt ctctgcaagc tatctaacct acacgtttct gtaaagtctt
      241 catatttaac actcaaacaa ttgatgtccc tacagtataa acaggataga taatgaatat
      301 aagtgggata gaaaattaat cctacttgcg aggaaagaga gtcataattc acttaggctt
      361 ctcagctctt acgttatgag gtcttcagct aactcatggg atccattcca catcccacag
      421 atgctcatta tgaattcttt ttatgtgcaa catgtgggga ctaaccagtt tcatatctcc
      481 tggtattagc cgcaatccaa agcattttgt attaaaacag aatgcaaaca cagatgctat
      541 ttaatacaaa ggatttgaat agtctctgtt ttaacataaa gttggtgtgt cttaatttgc
      601 tttgaaacag caatgggaag aaaagtctta ggagccaagc ttttacgaaa aggggatact
      661 ggcccaggtg accgctttga ttcttggaag caaaggctac gatgggacct ctgcctctga
      721 gatgatgcca tagccttttc aacactatac atattctgga gtgctactac ctgtgttctg
      781 tcccatgcaa ctcc
//
LOCUS       KCOD01003205             531 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 356388pyr ultra-conserved element
            locus uce-7455, sequence.
ACCESSION   KCOD01003205
VERSION     KCOD01003205.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 531)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 531)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..531
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="356388pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>531
                     /note="ultra-conserved element locus uce-7455"
BASE COUNT          165 a           91 c           97 g          178 t
ORIGIN      
        1 gatatgctgc ttccagttac caccgcaccc cacactgtat ggtattacgt gattttgttt
       61 tcagattgtt ggagataaag ttacttcatt attaatatat atgcactgtg catatccata
      121 aatattgaat atatacgaaa cctactggaa gtgttaatag ttaagataaa cgaagtccat
      181 tattgcaatg agtgactatt tctatgaccc tatttgcaat aaaagcagat tcaatgatat
      241 gagaaaattg ctaggtttca gaataattga accaggccag acgagtcccc acaaaggcat
      301 catttacaga gtactttgct tgtctaaaat atttattccc acagaaggaa atggaaaaac
      361 agttcatatg gttacacggc tatcctctga gtgtaaaata gttttatcat gttatgttta
      421 tttcctagac atcttccact ggggtattgc agaaaaaata ctggcagtgc agttcattcc
      481 tttgtgtgga ctgttcatat ttatgctctg ggaagtcaat catgttttgt t
//
LOCUS       KCOD01003206             482 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 356495pyr ultra-conserved element
            locus uce-1482, sequence.
ACCESSION   KCOD01003206
VERSION     KCOD01003206.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 482)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 482)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..482
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="356495pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>482
                     /note="ultra-conserved element locus uce-1482"
BASE COUNT          147 a           80 c           78 g          177 t
ORIGIN      
        1 ggctgaaaat catttttagc tcttatctct gtgatcggtt acccctgctg ttctttaatg
       61 gccttcacct cattatgcaa ctagtcatta aaagcttagt atccagtaca atggtagctt
      121 atgtaaagtg atctatgaga gctttatata ggcttaccag ccgcagcctt aattttactc
      181 attcgtctta attttttgta atcatttttt gtaaaaaggg tataatgtca ggcatgcttc
      241 cctgcgactg acagatccaa tctagcagat aattaccata aggaaattga tgttttagtg
      301 tgcaggggag aatttaattt actcagacat cctacagtac aatgcattcc aaaagatatg
      361 aggatttaag tttttaagaa attaaatttc actatttaac atgattactt atgttgaaca
      421 tcattaacta gctttttttt taactgtttg atataattac aagaacagtt atttggtcta
      481 aa
//
LOCUS       KCOD01003207             601 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 356605pyr ultra-conserved element
            locus uce-4237, sequence.
ACCESSION   KCOD01003207
VERSION     KCOD01003207.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 601)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="356605pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>601
                     /note="ultra-conserved element locus uce-4237"
BASE COUNT          163 a          133 c          131 g          174 t
ORIGIN      
        1 tctcttgtca tgacttttag ccaatataag gggagaggga agaagccatt aaaacgcagt
       61 tctttcaatt acgtcccatt atttgtcatc tttattgctt ttctatagtt ttcattgcac
      121 ctttaatagc atgcctggtc agaaaaggtg agctggaatg tgaacgtgct cgaatcccag
      181 tccctgtaga ttttaatgtc cccgcagact gctggcagcc tgcttccagc tgtggcaggc
      241 atgatgcagt gaattgcttt tcaatgttct ttactcaaat aggcagtaat tacaagctta
      301 aagaggttta gtggtccagt aaactacata atcacccctg aattagcctg ggctcatcag
      361 ttgcagtcca gcaacctcaa gactgctgtt tgtatgcagg ctttatcaca tagcaacctg
      421 agcagcaggt gtggaacagc aagaatcccc cataaacaca actgtctact ggggacaatg
      481 atctctaatg agatgaggct acagcatcac tgtaatttaa gtgggaaaat taacgctgga
      541 gaatgtgcac tacttccaag agtctctgct tcttcagaga acagcggtgt ttccctggct
      601 t
//
LOCUS       KCOD01003208             742 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 356715pyr ultra-conserved element
            locus uce-4856, sequence.
ACCESSION   KCOD01003208
VERSION     KCOD01003208.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 742)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 742)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..742
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="356715pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>742
                     /note="ultra-conserved element locus uce-4856"
BASE COUNT          227 a          121 c          159 g          235 t
ORIGIN      
        1 ttcacatttg gctaaaagaa aattggggac gcccatttgt actggtgaag gaggaaatac
       61 agatttcagg agctgaggga aggagaggaa gggattgcct ttctttgcat taatataaga
      121 tgaagattaa ttctgctagc aggattctgt ctgcttgtca gaattcagtg attttccatt
      181 ttggatcaac gcggtgccag aatgtaaatc cgatcgcctt gtgtctttca aaataaaatc
      241 aaaaagcctc cctgattgct tatatgggca gctagcacac cttaagaagt aagaaaggtt
      301 cagacaggaa tataataagg cccaggaaag tggcagcatg aaagggatga cctttatttg
      361 caatcatagc tgagatttac agtttattac tgatagcttt tataaagagc cattcagttc
      421 agaggtgaga ggtttgtcat ctggaaatgc aattaacttt agccttatcc caatccccct
      481 ggtcttagtg tgagagcagc acttgagcaa tatcatgatt tttgtctctt ctatcccttg
      541 ttctttggca taaatgcagg tgcatgtttt ttgctgctat tatttcatta ttattagatg
      601 cacctttgaa ttttttatta gctccaactt gattattgaa tgagaagatt tcaaagaaga
      661 gtgacattta aacctgagaa gatcactcat ggaaaggaat tgtgctattt atgtcaaaaa
      721 ttaattacag acatggagaa tc
//
LOCUS       KCOD01003209             743 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 356824pyr ultra-conserved element
            locus uce-7914, sequence.
ACCESSION   KCOD01003209
VERSION     KCOD01003209.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 743)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 743)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..743
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="356824pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>743
                     /note="ultra-conserved element locus uce-7914"
BASE COUNT          187 a          146 c          197 g          213 t
ORIGIN      
        1 ctccaacctt cggaggagcc aaagaggact gcatgtctcc aaggcccatt cccacagggg
       61 tttgtaggtg cactccatgt tttgctttgt gtttggcagt ggtggacatc ttcatgtgag
      121 agcttgcatg gaattggggt gggggcacgg taggtctcat aaatggggaa gccgctccga
      181 gcgtgtgaga caggtacaaa ggagctggat actgaccgta gtaaccaaga ttcatcatag
      241 gcattgatgt gtaaggcatt ccatagggtg catagtaact cccactggga atagggtaac
      301 cgaacccttg taaaaaaggc acctttgtca tggtgtcatt ggttttggca ggtctaccac
      361 gcttcttctt agacttcata tcagaggtcc tgcgaagata gagcaatggg tcatactgga
      421 tatatggcac agggtagtaa tgatcaaaat taatcctgaa gatgctggga tatggatttt
      481 catgataaaa tgtataactt ctatgggaaa tcctgaacac ttgaaactta ttgatgagtt
      541 cctcaaggtc tgccagaaac tggaggtcat ctctgttctg caggcttttc cttttcctct
      601 tgtgctttgg ctttttaata ctctcatgag agagaaagtt atccacaatg agatgcttct
      661 gccggtgacc atgcctgttc tttgtgctgg tgtcagatgg gatagcctct ggattgtcca
      721 gggtgcagaa atcaaaggag tat
//
LOCUS       KCOD01003210             726 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 356935pyr ultra-conserved element
            locus uce-7790, sequence.
ACCESSION   KCOD01003210
VERSION     KCOD01003210.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 726)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 726)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..726
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="356935pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>726
                     /note="ultra-conserved element locus uce-7790"
BASE COUNT          256 a          113 c          137 g          220 t
ORIGIN      
        1 ttccattcag aaacaagtat gagtctgata gagacaaata tgtttttcag tgtggattta
       61 catacattta tggattagaa tcaggcattc ctccttttat agtcagtgta ggtttaacta
      121 ggttaaaagg ttttcctgaa tattcatcca gacatttctt ttgaaataac cttctggttt
      181 aagttttgca caaattaaaa agtacataaa aactggagga ggagaagaga agtgcattga
      241 aaagaaatta agtatattta agttttaggg cttacaaaat cccaaatttc agagctttgt
      301 gaaattaaaa ggttagctat gaataaccac aatcaaatct tttcttttgt ccatatttaa
      361 ttcaaatgag attgctccat attgacttct aatgctaaaa ggccacccat catggaatcc
      421 ctgcagccaa tgaagcaagc aagtgaatgc tttcttaaat gatgctaatc agtccagaga
      481 ggcctgccct ctatccccat cagtattctg taattcagat gtgctgataa cctgaaattg
      541 aatgtgtcag tatgcagaca tgtgaagaaa aaaggaaact aaaaggcaaa agaggcagct
      601 atagagacaa tgctggtttg acttttaagg gaagaataaa aggaatagtt tgtagttgtt
      661 ctccaatgct tactgggtgc tatacaagaa catacagaaa attcataaat agaatttcca
      721 gatgga
//
LOCUS       KCOD01003211             494 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 357047pyr ultra-conserved element
            locus uce-360, sequence.
ACCESSION   KCOD01003211
VERSION     KCOD01003211.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 494)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 494)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..494
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="357047pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>494
                     /note="ultra-conserved element locus uce-360"
BASE COUNT          174 a           84 c           73 g          163 t
ORIGIN      
        1 aatcttggct tgttgtacaa taatagccct ttctcaacat gggaaaaaat tacagaccca
       61 actaatttcc ttgacaggga agagttacat atgttttcca cttgtagttt ttacgacaag
      121 tttacaattt tgccaaatct ggaactaatt gggaccgttt ccaaaaatgg tccaataaac
      181 ccacaatgag tacagctagc ctaaaatgca gcaaatgatt gtttgctttt acaagattgc
      241 acaattattt catttaagtt acttaaacac ttactgtttc atatcctccc agtttttgag
      301 cagcttgaaa catagtccaa aggttaactg ttagagggac aataagtatt tagataagca
      361 ttgcattagc caacatattt caaagaaatg taaattaaac agttttaagc tcctgtgaaa
      421 cattttaaag aggtatttac ataatctgaa gagtaaatat tagcccatac tatatatatt
      481 tttaattaca tata
//
LOCUS       KCOD01003212             248 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 357156pyr ultra-conserved element
            locus uce-2927, sequence.
ACCESSION   KCOD01003212
VERSION     KCOD01003212.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 248)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 248)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..248
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="357156pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>248
                     /note="ultra-conserved element locus uce-2927"
BASE COUNT           96 a           46 c           50 g           56 t
ORIGIN      
        1 taagaatact gaaataaaaa tgatgggatg gtgagaaatg gaaaagcccc ctccctcccc
       61 acacctcccc cttcaaaagg aaaagtgtag ggtatagaag aaaacttgca aaataaatgt
      121 tagaaacata tttactttga gggatccaac tctactagca actcctttgc tttcatccgg
      181 ccgtctaatt tgctacaatg ggggaagatg ggtaaaaaag acagaagaat aaagaaaaag
      241 tgaactta
//
LOCUS       KCOD01003213             259 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 357267pyr ultra-conserved element
            locus uce-1447, sequence.
ACCESSION   KCOD01003213
VERSION     KCOD01003213.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 259)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 259)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..259
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="357267pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>259
                     /note="ultra-conserved element locus uce-1447"
BASE COUNT           77 a           53 c           55 g           74 t
ORIGIN      
        1 gcagggagat tgcgaggtga catggtcagc ctgatgaagt acacaaaagc ttttggcact
       61 gcatatctgc aatatcatgg acagtcaagg aggcgcctgt tataaaaata cacagtgaaa
      121 cgcaactgga ggactgctct ttctcaaagg ctaacgtaat gcattccttc tgtttaggct
      181 cattttccag cctttcacat tctttgtgaa caagagttat aaaacaagcc tgatgcagtc
      241 caattatttt tactttgaa
//
LOCUS       KCOD01003214             261 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 357364pyr ultra-conserved element
            locus uce-4346, sequence.
ACCESSION   KCOD01003214
VERSION     KCOD01003214.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 261)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 261)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..261
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="357364pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>261
                     /note="ultra-conserved element locus uce-4346"
BASE COUNT           59 a           46 c           75 g           81 t
ORIGIN      
        1 aaaagtttca tttgtttttc tggtgtttgg aaggggaaag acctctttct gctcctgctt
       61 ttgtgtgcgc gtctgtgggg gtctgtttgt ctcatgaagc tgcttgcatg tctaagagga
      121 agtgactagt ttggcagaga gctgtgatct gagtcaggta agccatgtca tgttctctag
      181 ctccaccaga aaatggagag tagacaaagc tgagatggga agtgctgtgg atgtctctgg
      241 cttaatcatg caatgcacaa c
//
LOCUS       KCOD01003215             635 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 357463pyr ultra-conserved element
            locus uce-4166, sequence.
ACCESSION   KCOD01003215
VERSION     KCOD01003215.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 635)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 635)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..635
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="357463pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>635
                     /note="ultra-conserved element locus uce-4166"
BASE COUNT          198 a          153 c          131 g          153 t
ORIGIN      
        1 gggaagcagc ctggctccgg gtgacacccg cacgcacaca cacgcactca ctccagcctc
       61 tgctactgac ctttgcctcg aacagcaata actcaccaca taaatgaaca atcaacggaa
      121 ataccttaaa ataaaatcca tcctttctaa cgaagcattt cgtcctctcg actcgacaat
      181 aacctttcca taaggaacga aagctgtcag cgaaatggcc agctcttgtg gggacggtga
      241 tgggggcaga aaaaaaaaat aatagaaagc agtgcttgct ctgaacagaa actggaaaag
      301 cgtaatcgca gacggagcca gaccgggtct ccactccaaa tgccacaata atgcgctgta
      361 ttatgtgctc acgtggtcat acgtcaactt aaatcctttt atttgaaata gggaatcatt
      421 gaaggaacag ggtttcttag ctcgagcctt cgctttttaa agccttaacc caatatgtta
      481 aagaagagtt ttaagggact aagagatgca gatgactggg gcgagattgg tctgattctc
      541 tttcctccca caccaatatt tctttacaca aagcccattg gaaggtaaga ggaattctta
      601 taacgctgca ctttgatact tagcctaatt aaccg
//
LOCUS       KCOD01003216             466 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 357569pyr ultra-conserved element
            locus uce-997, sequence.
ACCESSION   KCOD01003216
VERSION     KCOD01003216.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 466)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 466)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..466
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="357569pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>466
                     /note="ultra-conserved element locus uce-997"
BASE COUNT          159 a           61 c           86 g          160 t
ORIGIN      
        1 aaaagtacta ctagacccat cagggataag taaaggctat atactataga ttattttaat
       61 ccccttgcta gatataaaag ggataattac atatttgtgg ttgaagccat gtggtggaaa
      121 aatcaataca acttttttgt atgacacttc attagtgtga aaaattttaa aagctgaaaa
      181 gaactgcctt gcaattaaat gcctctgcta tttcagattc agtaatgggt ttgtattatt
      241 atctagttta tttgaaatag tggttgcact atagcagtaa ttggaaaaca ttgattatgc
      301 acttgtatat agaaaacctg gcaaatcatt acagggcata gcaacagtta gttagcctta
      361 ctaatgaagc actaattgct gtaagtaggt taacatgtta gtgaaactac agggagatag
      421 agctttgaaa tctttttgtt cagtgttatg tattaaatct tatttt
//
LOCUS       KCOD01003217             621 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 357679pyr ultra-conserved element
            locus uce-3943, sequence.
ACCESSION   KCOD01003217
VERSION     KCOD01003217.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 621)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 621)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..621
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="357679pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>621
                     /note="ultra-conserved element locus uce-3943"
BASE COUNT          205 a          123 c           93 g          200 t
ORIGIN      
        1 ctcttccagt aaatctcatt tattcacatc tcattttcta ataaactgtg tcttgcctct
       61 gaaaaatttc actcaatgga catgaaagaa gggaatctga ttcatttttc tacttctaca
      121 gtaagacaag gcttatttca caaacaccag cattatacaa gatatccatg aatataaatt
      181 attctttctc aaatctattt ccctcctggc attgcttatc agaaaccaat aagtaagttc
      241 ttttcacgcc aatgattagt aatgaataaa cagagcaagt actaaagctg actttgcacc
      301 tactgaatgc tgcaagtgtc tgtactcgtt tgatatgcat ctagcaaagc ttggatgttc
      361 ccaaaaggcc actccatgaa cactgagaga gcagcgtctg ctagtggtgc ctgtaagaca
      421 caaagaagac agaaaatatt tatataagtg agagcaactg gaaagaataa ccttatttaa
      481 tctgtattcc atgctatttt aaaggcacac acagaaacaa tttcatgcaa tgatcatcgt
      541 atatagagag ttgaaacata tttcaatgtt tacttatttt tatgttttcc ttcattttca
      601 tcactttgcc tgatagatcc a
//
LOCUS       KCOD01003218             412 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 357785pyr ultra-conserved element
            locus uce-3790, sequence.
ACCESSION   KCOD01003218
VERSION     KCOD01003218.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 412)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 412)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..412
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="357785pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>412
                     /note="ultra-conserved element locus uce-3790"
BASE COUNT           93 a           94 c          104 g          121 t
ORIGIN      
        1 catcacccta aagctcccac ttctctgcct ctcctgagca gctctgagtg ggattgtcag
       61 tgttttatgt atttacacca gcagagaagg cctgggatgg ggactttttt cgtttatatg
      121 agtctcagcg ccacaggggg tatttaactt tctgccctgg ttgctgtaat tctctctcca
      181 gtggatatac agttcagatc aggttcctat tgctgtgatg acaggcattc agcaggcact
      241 gtaattgcag agttaaaaca gctcattttc ttactggcaa gctgtagtta aagaggtgct
      301 aggaggcagc ctggctgtct gcagaggaac tgatcaaagc actgaaaggc atctggcttg
      361 tctctgtttt ctttcaccac cccccttgct gatggagggg aagaagcgaa tg
//
LOCUS       KCOD01003219             665 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 357888pyr ultra-conserved element
            locus uce-1897, sequence.
ACCESSION   KCOD01003219
VERSION     KCOD01003219.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 665)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 665)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="357888pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>665
                     /note="ultra-conserved element locus uce-1897"
BASE COUNT          219 a          139 c          126 g          181 t
ORIGIN      
        1 aaacgcagct ttctggtgct gtaacaacta atttaggcaa gtatgccagt catgcactgc
       61 tagcccatga aagtaataag gatcccacgc aggccagcaa ttttcacaag caccacaaaa
      121 aattaggtga ccctacgtct atcggttttc tcaccgtatg aaataaaatt tccatgtggc
      181 acttgtatct gatgcacagc atggtgattt atcaaagatg caaagagcat gcagaaacaa
      241 tctttattac atccatttcc tgcttgtcag ctgagatcat gttggctgtt cattaaagaa
      301 ctcatgcagg tgagaggaat atatctcgat accttgatag attgtccgct tccccactgt
      361 gacagccgct ggatggattg agcagcgggg aaaatgaaga aaagcgctga ctcgaaagct
      421 ctgctgtcag atatattttt acataggcaa ccatgtcatt tcagctaaac aaacatcacc
      481 tcagtataat gtattagata taaagcccta ccccccactt cctcagaaaa caattatggg
      541 gattatgttc gatgataatg taaaaatgta ataaagaatt aaaactgaag agcacagtgt
      601 tacagtcttg tttctatttt tgcatccatt gtgattacaa ataaagtaac caaccaacaa
      661 gacag
//
LOCUS       KCOD01003220             423 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 357992pyr ultra-conserved element
            locus uce-2533, sequence.
ACCESSION   KCOD01003220
VERSION     KCOD01003220.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 423)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 423)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..423
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="357992pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>423
                     /note="ultra-conserved element locus uce-2533"
BASE COUNT          123 a          110 c           61 g          129 t
ORIGIN      
        1 tggctttgcc attacagtca ctagcagccc atggtccagt cccatcactc tccattccct
       61 ctgtggcttc ccaggtcatc accattcgaa gttgttttga caactaactc acctcctatg
      121 ttgttcttgt aagtattata caactctttt actcttctgt aacggaaagc cagcttcctc
      181 atccagtcaa cccctcctct tacacctgtt ggcagacaaa ggtttgcact acttgcagct
      241 gcatggaagc catcagttgc aaaactgtag gtactgcaaa cacccaaaat acagtaaaaa
      301 taaatacaat gtattcctgt aaatgctcaa attatttaat caaaaaagaa atatcttacc
      361 ttaggtcttg tccattatca tcagaagaaa catcatctat atgaacttga tcgcattcct
      421 gtt
//
LOCUS       KCOD01003221             358 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 358095pyr ultra-conserved element
            locus uce-3938, sequence.
ACCESSION   KCOD01003221
VERSION     KCOD01003221.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 358)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 358)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..358
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="358095pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>358
                     /note="ultra-conserved element locus uce-3938"
BASE COUNT          128 a           59 c           71 g          100 t
ORIGIN      
        1 tcttcaagtg atagaagtac caggggaagg gggaaaggga ggcagtttcc agtatttgtc
       61 attattatag gttatatata caggaagaaa gttaattaag ctttaaaaaa tccatcacac
      121 atcaatgggt gcattttaat gagtacaaaa agttgaggtg tttactgcca attaaagtgg
      181 tttttaaata agcattaatt aacacggaaa ttcagaagaa agttatacct tgtcaaagaa
      241 aggccagtgc agtctatgcc cacttctgct cccattcata ctcagatagt aattaccacc
      301 aaccctgtat tttccataat aatgaggaga ggctgtcatg gctgtcaaac aaaaacaa
//
LOCUS       KCOD01003222             708 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 358208pyr ultra-conserved element
            locus uce-1898, sequence.
ACCESSION   KCOD01003222
VERSION     KCOD01003222.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 708)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 708)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..708
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="358208pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>708
                     /note="ultra-conserved element locus uce-1898"
BASE COUNT          186 a          178 c          117 g          227 t
ORIGIN      
        1 gtgcagcctg gcggaataac aactttaaaa agtgaagatg tcgctttttt atagctgact
       61 cacatttata taactttgtt aatgcatctg ctccctggaa gttacagtat ctgtgttcag
      121 ctgcgatacc tgcccataaa tcgtggcagc acggcgaata tcaacagctg cattttacta
      181 tttcagcccg tcagtttaca ctgtctccat cacggcgaat tcctgtcagc tgcactctcg
      241 ctaacacaat tcctgtgttt tgcctggcag taaatggacg ctcctgcccc agcatcatct
      301 aaacaactct gttaacattt gcccccgagc gtctctctct ttgtccagtc cctgtcttct
      361 aacagatgtc atccaagtct aatcaagcat aaaatggtca taaatatttc tttctggtag
      421 atttcacatt cgcatttcat gcagggacat gatatttttc tgctacctcc agggagtacc
      481 taatgcaaaa accagttact tacattcaag gctcatgttc ctttagtaaa atgcagcaca
      541 tgttctcagt tcaaagacat aaaaaggcgc aagacttttc ttttgtttaa ctgcaccaat
      601 aatgtgtgcc acagcttcca tctaggtatg acattgtcct ttgcttctga attttgaccc
      661 tactgctttt tgaatttcct actcccatat cttaatcact gcacaaaa
//
LOCUS       KCOD01003223             490 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 358317pyr ultra-conserved element
            locus uce-124, sequence.
ACCESSION   KCOD01003223
VERSION     KCOD01003223.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 490)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 490)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..490
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="358317pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>490
                     /note="ultra-conserved element locus uce-124"
BASE COUNT          168 a           77 c          104 g          141 t
ORIGIN      
        1 taattaaagc atttaaaata atttacactg aaattgtatg tgcttgggtc tgtcaaaatt
       61 gatgctttaa taacatgtca tccctttttt cgattgccct gaaatctgtt aaaattacca
      121 ctaatctaat tgggaacaaa gttgtcaaat gcatgcagct ctgacagttt gtctttctgc
      181 aaactgccga cagattgcaa gttacgcatg tgttgagcag atgggtaagt taaaaggaac
      241 acaaaaaaaa gcaatttatt aaatcacctg gaaccagcag ctccattcca aaaatagtga
      301 gaatgaaata tagcaagagc taggagagtt ggcactggaa tatgccagaa ggtaccagtt
      361 acaaaacaag ataaacattt tgagaagcct cagctgtgtt gcagaataat gaggcgttat
      421 ttaacccgat atagattacc agcagaaatt aatttagggt gcagggtttt gtgagagtgt
      481 gtgagtgtgt
//
LOCUS       KCOD01003224             591 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 358428pyr ultra-conserved element
            locus uce-2183, sequence.
ACCESSION   KCOD01003224
VERSION     KCOD01003224.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 591)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 591)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..591
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="358428pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>591
                     /note="ultra-conserved element locus uce-2183"
BASE COUNT          190 a          104 c          108 g          189 t
ORIGIN      
        1 cagaagctga tagagaccac ccgagcgaca acagcattcc caacaaaacc ctggattttg
       61 attaaaacca tgaacttaca ggaggagacg atttagaaac tggtccaata aaaaggtggg
      121 agacaaaaag aagatttgga aacatttttt cctccgtata aattgtagtt tgtccctgtc
      181 cagtggactg attcactgtt tctgtgtcct atgggttctt tgttaagcaa gagaagttag
      241 tagttaatta tatcatgaat gtacttgtct gtgtacagtt tctagaacat taaaaagggt
      301 ttgtttgctt agctgtcaac aaggaaaaac ataagggagg cattcaacaa accagttttg
      361 agattaaaaa tcctttcttt tatattttca aacatgccca aaaatgaggc agttggcaaa
      421 cttctcagga caatgaattt ttcccatttt tctttctacg ccacacagtg cattgttttt
      481 tctacctgct tgtcttattt tttagaataa tttagtaaac aaaagtctcc taattttggc
      541 atgaattccc ttatttcaaa atgaagacaa ccttgcaaag agattttgag g
//
LOCUS       KCOD01003225             382 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 358531pyr ultra-conserved element
            locus uce-4388, sequence.
ACCESSION   KCOD01003225
VERSION     KCOD01003225.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 382)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 382)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..382
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="358531pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>382
                     /note="ultra-conserved element locus uce-4388"
BASE COUNT           77 a          114 c          127 g           64 t
ORIGIN      
        1 agtgctggct ctgctgctga gaccctctac acagcacatg gggctgagcc ctgggagctg
       61 tgctgttcct tatctccacc ccagggacaa acagcagtga ggcagtggct gtgatgagca
      121 gcagctggag aacccagctc tggggttgac attgccgagg ctccggcagc tgtgaccctg
      181 gggctctctc ctggcagatc atcgccgccc aggaggagat gctgcgcaag gagcgggagc
      241 tggaggaggc gcggaagaag ctggcgatga tccggcagca gcagtacaag ttcctgccct
      301 cggagctgcg ggacgaggag cagaactgag ccgcatgcgc acagactggc ccacccgcca
      361 cctgcctgct cctatttaag ac
//
LOCUS       KCOD01003226             654 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 358639pyr ultra-conserved element
            locus uce-6990, sequence.
ACCESSION   KCOD01003226
VERSION     KCOD01003226.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 654)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="358639pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>654
                     /note="ultra-conserved element locus uce-6990"
BASE COUNT          194 a          132 c          130 g          198 t
ORIGIN      
        1 gttcttcctg tgacctgggt tctaacagtg ttactctaag catttaaaaa gatttctgga
       61 gcagaattgg ttaattagtg ctttgtgtta catatgaccc aaccagagat aaaaaggttt
      121 aaaggtctct tgtaaccctg caatgccatt tgtaacacaa aaataacccc ctttcattac
      181 tggcatgcca ctgtagcagg caggttattt tttcccttcg ctgcaatgag ggcagctttc
      241 gcatcagaag aattcttggc aaattaatgc gctacctctt gggctaatta aattagaaag
      301 gatcaaaaat acagagcagc ttttgtggtg gacacaatgt tgtgcttcat gcatcttgct
      361 cagagaggaa tttctgccat ttagcccctt tttgcctcta gcagcgttct ggactctcta
      421 acacagtcaa gttcctaatt tgcctcaatg agagagaatt attaactgat aataagaaaa
      481 ggagcattca cagctccagg ctgggctgtg tggaaaaggg tgagctacac agcacctgaa
      541 gcgcatgcaa tttttattaa ttcctgccta aaacaacgca ttcaggagta aaattgctgt
      601 gcaaatgaca aaaacaatta taattttgat tcttagattc gaactgcttt atct
//
LOCUS       KCOD01003227             567 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 358746pyr ultra-conserved element
            locus uce-2561, sequence.
ACCESSION   KCOD01003227
VERSION     KCOD01003227.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 567)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 567)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..567
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="358746pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>567
                     /note="ultra-conserved element locus uce-2561"
BASE COUNT          193 a          115 c           78 g          181 t
ORIGIN      
        1 gtcttttgta ccctggggtt taatatttca tatagaatcc cagaggtact ttaattcaac
       61 cttcaatata ttttgccata atctttattt taacaggact cctacaaagg ttccaggaaa
      121 gacatactta tgaaacagag aacaagggaa catataagcc attacagaag attggattaa
      181 aatgtactta cccaggcctc tcaaatatca tacatctcca ttatgtaggc tttaggcacc
      241 aagccaatgg ttcccttcat ttctcctacc caccagccaa atctattgta ctcctaattg
      301 aaaacaatag gcagtattaa cctttagtct gatataaatg caatagagtt ttgtatgcaa
      361 ctccttatgg atgctttctc ttatatacag ttataataat ttcaactgaa aattaaaaca
      421 ttttatcttt ttgttatagg cattcacatg cagttaggca aaggcagaag ctaaattttg
      481 aaaaggccag gcatactcaa gaaaatttct taattatgta acacctacta aaaatagccg
      541 acctccttat cctctattca tcacaaa
//
LOCUS       KCOD01003228             670 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 358858pyr ultra-conserved element
            locus uce-7678, sequence.
ACCESSION   KCOD01003228
VERSION     KCOD01003228.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 670)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 670)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..670
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="358858pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>670
                     /note="ultra-conserved element locus uce-7678"
BASE COUNT          208 a          134 c          142 g          186 t
ORIGIN      
        1 caacaattaa ttttgcagag gaagcagcct gtttaaagat gcctgcagca gtcactaaaa
       61 tatgtgttgt ttttcaaggc caccagacac acagttggct aggttggcta ataaacaaaa
      121 caacaatgca ccagcctcat ggggtttgca ggaagaaggg atgagaaata aaatgaataa
      181 tgcttacctg ctaggggtgg gtgaagacta taattgttta gcccccagca gatccctgca
      241 agggttaaaa atgacaaaga tattagttgg tgactgctaa gattgttggt ttgaagcttt
      301 gggcaaaaca cagactgtta tttaccggac ttggtcgatt tacttcttaa tgcaataatg
      361 acctgtgaaa tgaaacgtga gctagacaat tgttcctcat tgtttccagt aaaacatcct
      421 ttcatacccc attaaaccac cattaattcc atttgaaaga gaagcaggca caaacaccaa
      481 gggatatctc tctcttttcc tttttcctct cgggactgat caagtcctgt ggatggaaaa
      541 gctttctaac ccattttaga gggtgttggg catcttttct ggatgaaaac cgcagagatc
      601 tactggatta gcacccagtg gatcacattc ctgagaaatc tggcaaacac agtcaagtgt
      661 ttatacatca
//
LOCUS       KCOD01003229             624 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 358968pyr ultra-conserved element
            locus uce-3807, sequence.
ACCESSION   KCOD01003229
VERSION     KCOD01003229.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 624)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 624)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="358968pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>624
                     /note="ultra-conserved element locus uce-3807"
BASE COUNT          178 a          143 c          135 g          168 t
ORIGIN      
        1 tccacctcaa gaaactttcc ctgatgcaaa atcctggagg atttggtcat tgtgtcttat
       61 acactgttaa ggctcaccag gcaaaagtag gctttctcct tcacttttct tttgggtgat
      121 tgaatatgaa gtccagctca ctgcacatcc ttatgtgaga tagtttaaca cggtacctcg
      181 aggctctgtg gtcccagaat gcagcgcagc tcactggcag tagttcagct gaagactaaa
      241 catttggctc agtgacagca gagctgccaa gagttggcaa caagagactc acagggaagc
      301 agcaggctgc taaacccttt cacattttta attagatcca cacacccatg tctttgagct
      361 atcataaata tacagatgac atagagagca ttatttgggg taagggaaaa aaaaaggctg
      421 tactgtggta tctcttacct tattaaaata atttacctac agctagtctt tggaaccggg
      481 tttgtgactt ttaactcaga taaaagtctc tccctgccta cagtcgaatt caccctgcac
      541 actgaagatg cagggtcctg agatgactga cacgtcgcct tagctgcaat agcatcgcca
      601 gaagagggca ttattggcag caac
//
LOCUS       KCOD01003230             513 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 359073pyr ultra-conserved element
            locus uce-1029, sequence.
ACCESSION   KCOD01003230
VERSION     KCOD01003230.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 513)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 513)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..513
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="359073pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>513
                     /note="ultra-conserved element locus uce-1029"
BASE COUNT          208 a           73 c           63 g          169 t
ORIGIN      
        1 aaattggcac aaaaatgtta aacattgttc ccaacactgt tttataagat tattctaatt
       61 tggcttacta aggaaatgag agttttatgg ttaaactaat ctcttaataa aactgcagag
      121 catcatgcta ttagtcacac agtgaatttc aaaatttaag agctttatat taaaaactgg
      181 gtaaaggtaa aatgaattga ttgcaattgt aaaattaata cattcccatt ttaattcttc
      241 tgttctacag tccaaggcaa gtataaatgt taacataaca ctgttaaatc aaatctcaat
      301 gcaagagaac cgattgcatc tctactttaa atcttatcaa ctttccaaat tttcatacta
      361 aaatatatta ttgtattaat acaaactaca gtattataca ctacactgtg taataaataa
      421 agaaatataa aaataagaca cataaatata aaagttttct aaaactaaaa aggtacatat
      481 gtcagtaaga agggtattaa tactgccagg ttt
//
LOCUS       KCOD01003231             584 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 359182pyr ultra-conserved element
            locus uce-2024, sequence.
ACCESSION   KCOD01003231
VERSION     KCOD01003231.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 584)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="359182pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>584
                     /note="ultra-conserved element locus uce-2024"
BASE COUNT          194 a          116 c           95 g          179 t
ORIGIN      
        1 aaaaactttg ttttgagctc cgattaattt ttatccttat gattgtcctt ccttgatttc
       61 tactgacatt ttagagccaa tgtcggctaa taaatagaat aacacgctca taggcacaat
      121 tcagattcaa atatgttcct cccattcccc tagccagtaa atgcaatttt taccagctgg
      181 caattcctga acagccagtc attttcaaga atgtggcttt aacatacaga gcatcagcat
      241 tgaggcaggg ctggagctaa aacaaagtgt tcatacatac atgtattttg cataaataaa
      301 tgaaataaca agacataaaa atgactcaaa tccggcaact gtgaggcagg cccacacgag
      361 tcgaaacaga tgacttttgt tcatgtagtt ttcgtacaac agtttcacat tagtcagaag
      421 tgataaaaaa taccatttat atccagtgct tataacactt acgaaacaac atctgtgagt
      481 gtgttttttt ttgtactaca agcaaaatca agtttcagtc ctaaagaaca gacctttgtt
      541 ctccacaagc ctgcagaata ttattttggc atggtcataa aatt
//
LOCUS       KCOD01003232             311 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 359287pyr ultra-conserved element
            locus uce-4035, sequence.
ACCESSION   KCOD01003232
VERSION     KCOD01003232.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 311)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 311)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..311
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="359287pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>311
                     /note="ultra-conserved element locus uce-4035"
BASE COUNT          120 a           50 c           53 g           88 t
ORIGIN      
        1 atataaatgt taaatgacag tcacataagg acatatatga aatactaaag atactctaga
       61 acctttctct tgtattttta tttaattgct ttcgacttgt aacaatagaa aagtactggg
      121 ctgtggaaga acagcacttg cctgaacaac agacgatgta tctattatct cacttccatg
      181 aaggtcatcg acctatgaca gttggagtag cagaaacatt agaaatcatg tgcaatttaa
      241 tctttacaca aataaaggaa aagtatcaca atgcctgaat aatgaagagt ctctcagaga
      301 aaaagaaaag t
//
LOCUS       KCOD01003233             787 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 359396pyr ultra-conserved element
            locus uce-6233, sequence.
ACCESSION   KCOD01003233
VERSION     KCOD01003233.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 787)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 787)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..787
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="359396pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>787
                     /note="ultra-conserved element locus uce-6233"
BASE COUNT          258 a          154 c          157 g          218 t
ORIGIN      
        1 gaaaaataaa acccattagt tacagaagta gggatcttga gggttgctct agataaagca
       61 gttaaagaag ttgcaaaaga tgaatctcca atcatacttc ctgaagtgca aagataaaaa
      121 taccactttt gatccttaaa taggtggtgt tttatgtcac tataacactg caaaaataat
      181 tctgatgtaa aaagaaaatc ctaaaaactt cctattttat ttctgtacaa tccagattga
      241 tcacctaaga gaagcataat taaacaatgc taagcatccc aaccccttgg agaatatgct
      301 gctgaaaaat atttttagaa caatcactgt agtaattctt cttagttgta gaaacactcc
      361 aaatcagaaa gtcaattttt cctctatttg cagaagtgtg ctggttttca ctggaaaggc
      421 gcctgtgttt tgtttggctg ctgttcatat actgccttgg caggatttcc ttggattgct
      481 tacagtgaac attgctcttg catacagtag cactcccatt ttaaccgtcc cagccacacg
      541 ttttctaata acacacagag agctgcaaaa tccctataag cacagctctt taaagcagca
      601 acagaagggg gtgggggcgg aggaccggag gggggaggct ctgcccgttc aaaatccaga
      661 gatgcaaaca gaggatagtc cttttaaaaa caaccaatgt gaattgtgtt taaggaacag
      721 ctttccaggg aaagaaacat ctccgagaag attcagctga ttcactgaat ctgatctgta
      781 caggctg
//
LOCUS       KCOD01003234             679 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 359508pyr ultra-conserved element
            locus uce-4430, sequence.
ACCESSION   KCOD01003234
VERSION     KCOD01003234.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 679)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 679)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..679
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="359508pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>679
                     /note="ultra-conserved element locus uce-4430"
BASE COUNT          144 a          142 c          121 g          272 t
ORIGIN      
        1 catttgttta tttcttcatg gtccaaaact gttcaatcat gtgtaaccaa actctgtatg
       61 agatatttca ctcctgagaa tatgatgatg gtaggtaact agactctgat ttccattcta
      121 gctgtgggta tttatgttgt caagtggtgt gatgtgaagt gcagaagctg ttctgtcatg
      181 gcaaatacaa acttgatttg tggtcctttg tcctgttttc tttttcagtt ttatttttta
      241 gagccttacc tgtctttttc ccttacttta ttctctttct gtactttctt ttccccctaa
      301 atactttact tactagctaa gcctggcaaa cttctgcctt tggtttcaat cagtcaggaa
      361 aaaaacagtg gaacccacat tctaatgata actgaactgg gtaagaagtg cctttttcct
      421 tcacatcact gtcttatgtt gttgttgtgt catcagcttt tcctttattt atctggctgt
      481 atcagagggg ctaccctcat ggcactgctt tgaatgtgtt ttatttgtga ttctggttga
      541 aattgactgt cttgttctag tctttcttaa tgattttttt ttcacgcagc atcagtaagc
      601 ctttgatcac actcgtctga cctgccggct gttttcatag cacctcctca ccaattcatt
      661 gtttttggcc tgagtcccc
//
LOCUS       KCOD01003235             748 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 359619pyr ultra-conserved element
            locus uce-2512, sequence.
ACCESSION   KCOD01003235
VERSION     KCOD01003235.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 748)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 748)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..748
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="359619pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>748
                     /note="ultra-conserved element locus uce-2512"
BASE COUNT          230 a          163 c           99 g          256 t
ORIGIN      
        1 tttcctcttt tactctgtca ttagcaaaat acaaaatgct gtaagtgtta ttccaatttt
       61 tatattaagc atgaataaat gttagattca tgtcatgaaa gacataaact acacttgtat
      121 aatctctatc aaggaacacg ttagaataga acatccagca ctgtttgctg tctacttcat
      181 aggcatatat ttaattaagt tatgctgctc ctaaaattca aaaagcttaa tctttttcta
      241 tccttaaatt aagctccctg tgctctacaa tgaccaaaac aaataatcta tgacctacaa
      301 acaagacact tgcattccct gaagatttac ttcatcttct cctctaggtt atacatcttt
      361 gaacttctct tttctgtaac gaccttctgg tgctcattag catgctgatt accattaaca
      421 cagctataat caagcaattt tcttggtgta tgtcgaggag aaatgctcat cagaatgcag
      481 ccaagggaca aaattaactg cataaatcta cagcacaaac tggatctcat ccagctttag
      541 tcttcctcct tctgctaggt gtgacatcac catgatggcc taataagtat cccggttcca
      601 cactatttaa tttacccctt ctctcaattt tacagttcca gggatagatg accaccttgc
      661 agtattttct cttaatatgt gtttaccttt acttctgtct cttctaatta gtcatcaagc
      721 tacagataca aagattatac aaatgtat
//
LOCUS       KCOD01003236             628 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 359730pyr ultra-conserved element
            locus uce-6010, sequence.
ACCESSION   KCOD01003236
VERSION     KCOD01003236.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 628)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 628)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..628
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="359730pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>628
                     /note="ultra-conserved element locus uce-6010"
BASE COUNT          138 a          122 c          163 g          205 t
ORIGIN      
        1 agaatttgag agtagagcac aaggtgaaga gagtgaaatc agctaatgaa ggagcagtac
       61 tgctgatagt gcatgtctga acctgaaggc cttggtctgc cattttggga gacaaggagt
      121 tagttgggga tggaaagact ggagtttgta ttctttctgc tctgttaccc cttgctatct
      181 tcatggatct gacactctgt ttatctgaca gtgcactcag tactgcttcg ccagggaaaa
      241 ttgcacaaaa caagcctagt gcatcagcat tttcattgtg tattaagctg agcctccctt
      301 cacatggtca catccccttt ttaatctggg attccatgtc cctttcccag tccagcctgt
      361 ttctgtggtg tctattgctg gtctccctga gcttctgttt ctgtggtttg agtgtttgtg
      421 tggctgagtg ttaagacctg caggactttt ggaagtggcg ttgtttgggg gttaggcaat
      481 acactgattt agtgttagta gtttgtcata gactgaggtg atggccgcgt tcaagttgga
      541 tttcctccca gagatgatgg tggaccattg ctccttgaat gcaagccctg tgtaagtatt
      601 ttaaactgat agttggaatt gctatctc
//
LOCUS       KCOD01003237             716 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 359840pyr ultra-conserved element
            locus uce-1884, sequence.
ACCESSION   KCOD01003237
VERSION     KCOD01003237.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 716)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="359840pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>716
                     /note="ultra-conserved element locus uce-1884"
BASE COUNT          241 a          140 c          112 g          223 t
ORIGIN      
        1 cacgtaatga ctggaaaatg ttatacccat aaatcatact accacgatca tcaaaatttc
       61 cactcagcca gtacaaattc aacagcattt atgtctttcc agcttttagc ccataaaaaa
      121 tctgtgtttt tggagactgt gttacactgg tgatcttaaa actcccaagt ctggtataat
      181 gagtcctcaa gtgcgttata acttaccagt aattacattt caacatttct gctttcagca
      241 gttagtgttt tattcataaa catttaaaca ctgaattagg cataaaataa gaatgttggc
      301 aacaacccgg cttaatttca ttaactatta ggtaaacgta ctattgcttc ttcaaataat
      361 ccttggtttg aatgctaaag atgtaatgaa cttcatggtt catagcatct gacattgctt
      421 aattaatggg tgcatttata gtacataggc ctcggtaatt gatttatatg catgatttgc
      481 acatacagct gttagttcct gtaggaaagt cataattcaa atgtgtgcat atatatgggg
      541 aaacccacct cacaaacttg tctagttccc aataacaaac aaatagcacg agaaaaataa
      601 acagcatcac taccagaaga aacattaatg tgatcacgtt tccacagctc acacatttca
      661 agtggaaaac atgacaaaat gcttctcagc ctctttacag tagatgtggt taagtc
//
LOCUS       KCOD01003238             571 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 359952pyr ultra-conserved element
            locus uce-1468, sequence.
ACCESSION   KCOD01003238
VERSION     KCOD01003238.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 571)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 571)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="359952pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>571
                     /note="ultra-conserved element locus uce-1468"
BASE COUNT          176 a          111 c          104 g          180 t
ORIGIN      
        1 gggcacagca gctcaacacc aaataaaacc ctgctttgct tctcctctct ctgggtctta
       61 tccatcgctt ggatctgctc aaactgcttt gctagcgaga ttcgtaacca tttgcacaaa
      121 tgctttacat taagaagtac taaagccaac atgttttctt ctgttgcaca gaatcctaat
      181 gcacatccac ggccgacctc ccaggattta gcagggtttt gggatatgct gcagttgtcc
      241 atagaaaata ttagtatgaa atttgatgaa cttcatcagt taaaggccaa taattggaaa
      301 cagatggatc ctcatgacaa gaaggtagaa cactgtagat tttgtatgct tcatttaaaa
      361 ccctgcacaa atactggaca gattaaatag gcctctgtgt tacagcgctg acgttaaaaa
      421 tgaagctcat atcaaattaa tttcattgta ataacaatgt ttacataata atcatctggg
      481 atattatctg taatatgttt caggcatatt tttaaaccaa atctgtcttt gtgaatcgga
      541 taatgggaat gtggtacttt gttaagcttt a
//
LOCUS       KCOD01003239             624 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 360060pyr ultra-conserved element
            locus uce-4348, sequence.
ACCESSION   KCOD01003239
VERSION     KCOD01003239.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 624)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 624)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="360060pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>624
                     /note="ultra-conserved element locus uce-4348"
BASE COUNT          200 a          127 c          121 g          176 t
ORIGIN      
        1 ggaagacatc tccatccagg ttatattgga gaaacgctct tcatcaagta acaggggtga
       61 tcaaagtctg gcagttgtac cttatctatt ggggatcaca aatcaggaat ggagctgccc
      121 ttcagtttgc tcctccccac cattaaatta cattcaatca ctgcacggag aatgcagccc
      181 atgcgctcac agccagatgt tatcattaca ggccttttct tataaactga tgctgaaacc
      241 cgagtggttg atgagactag ctaagcagtt gtacctttga cctgattgca ttaaacttgc
      301 cctatcaatt taagcttagt ataaacacca tttcccagag tccctcatga cttcagtagt
      361 gagaagaagc tgactaagcc taaacatttt ttaacagcaa tcttgtctta caacaccaag
      421 gggatttgcc atgtatctgg ggctttataa aaccatatga acatgctgaa agaattaaag
      481 tcctttaaaa aagcaaaatt gatggtgaca gtccttttag aaaatcagtt tgtagaatgt
      541 cagcacaaga ggagttggaa acaggactaa aatagttttt aaaaatacaa cagatttgtg
      601 tttgtttcac accgaatact gaga
//
LOCUS       KCOD01003240             976 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 360166pyr ultra-conserved element
            locus uce-1376, sequence.
ACCESSION   KCOD01003240
VERSION     KCOD01003240.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 976)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 976)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..976
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="360166pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>976
                     /note="ultra-conserved element locus uce-1376"
BASE COUNT          258 a          183 c          200 g          335 t
ORIGIN      
        1 cacgtgcctg gcctggaaga tgagcgcggc gctctgcagg accttggaaa tgccacggct
       61 ttcacttgcc ttgtgccccg agacagcctc tggaatcagc tgttctccat ccacatggaa
      121 caaagggctg gcagagggtt ggggcttgtt gtgatttctg ctcccttttt tacctgctga
      181 acatttctac gtgtttgacc ctttcatttt agctttacct ttctttgtcc cctgaatgac
      241 cggcataatt catctgatta tctattatct tgttattgga cataaatttt acaagctgtt
      301 gagagtgcgg aaaatcaata ccttttaaat gctgtttatg tgtgattaac ggttaatatc
      361 ctcacaaatt atttaatgta ataaggtcat ttatcttttg catgggcttg gtatcctgca
      421 aagaataata gaataataaa tgaggacact ggtaaagagg atatttcaga tgcttttctg
      481 tgccagtttt attacccata tcctctttac agccacaaag ctgcactatg gttattttat
      541 gcaagtaata aaattagcct gagatggaat tagcagactc ggggctcttt ataggtcaag
      601 tcggtgcttt atgagcctgc gactccctag tgctatcgtc atgaggctag ttagaggggt
      661 ctttaagcat gatttaatat gtccatgctt cagaaaatag ttaaatagct aattaaatgg
      721 aggagttaat ttacatatta attgaccttc cagtaatatt tatattgata cctacatgag
      781 aagcccttgt cttcattgcc tttcatcata gttagtctga gcaaatatgg tggaactttt
      841 ttgtttaaac tgaagtttct ctttattgtc acaggagagt tgttgtattc ccttgaatag
      901 catagtacat ctggcctcga gtttatgcat ttgctgaagc cctttgttgt agaataatta
      961 ggaaacacag tcaaat
//
LOCUS       KCOD01003241             446 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 360381pyr ultra-conserved element
            locus uce-6915, sequence.
ACCESSION   KCOD01003241
VERSION     KCOD01003241.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 446)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 446)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..446
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="360381pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>446
                     /note="ultra-conserved element locus uce-6915"
BASE COUNT          162 a           65 c           76 g          143 t
ORIGIN      
        1 ccacatggta tctaataaat ttacaaaagc ctatccatta aatagttctg ccccagagaa
       61 acaagttaat tactaaatag tttcaatgaa aagtgcaata ccagcataaa tcacattaaa
      121 tcatatttaa tggactgtag tggaagaatt aagaaaattt ttcttccata gaaatagttt
      181 gttagaacat atggaaaaat gaaacactgt ttagtgtttg agataaaaac aatcaaaggt
      241 aatcctttaa aattaggatt cagattagtg tctgcaaagg atgctgttta actgaaacat
      301 ctggtagtgt tatgctgaga gacaggcctt ttttaacttt ggaaatgaga ttagtagatc
      361 agttatttgt aagtgtccaa gtaatttcta attattttat ctgggtcaca gataatccgc
      421 ttttacaggg ctcccacaat gacatc
//
LOCUS       KCOD01003242             511 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 360489pyr ultra-conserved element
            locus uce-6232, sequence.
ACCESSION   KCOD01003242
VERSION     KCOD01003242.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 511)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 511)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..511
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="360489pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>511
                     /note="ultra-conserved element locus uce-6232"
BASE COUNT          183 a           84 c          100 g          144 t
ORIGIN      
        1 ttgtaattag attttgtctt caagaaagtc accttgactt taaaaactaa acaagtcctg
       61 aatgagctgc taattatgat gcatttctga ctgaatgaag cactcttctg ttcacacgaa
      121 gtactccccc taaacagagt tggttggtca agttgatctc ttgtttgaaa ttcaatcaag
      181 ggcattaaag tgtaaaccag ttggaaaaac aaattgctta gggaaatcat ttgcttaaac
      241 aacaacaaac aagcactggt aatcttctta cagaaattaa tgaagggaaa accccctcag
      301 cttgggtgga taatgatcct tagctatcat gtaacaagcc tagaaggttt agggagaagg
      361 tgaaaattaa gaaagctgga ttaaactgaa cttccaaagg aacaaaaaga aattaaggat
      421 aaggatcagt tctcccactt tgagattgaa aagtaggtct gaactggaaa gagcctaatc
      481 ctttatgcaa atctggttta aagttaagtt t
//
LOCUS       KCOD01003243             708 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 360598pyr ultra-conserved element
            locus uce-3304, sequence.
ACCESSION   KCOD01003243
VERSION     KCOD01003243.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 708)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 708)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..708
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="360598pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>708
                     /note="ultra-conserved element locus uce-3304"
BASE COUNT          239 a          123 c          158 g          188 t
ORIGIN      
        1 gtttttattg cttggctgca atgtcaaaat tgggttggtt taaaatattt atgacatgag
       61 agaaagaaaa tctgtgaatt actcagaact taatgtacat actcttaatg tgtttcacat
      121 tttctttagt tggggacagc agagtgggga attgaggata acttgtttac tgccaaacag
      181 gtctccgtag tacctagttt tcctatgtat taaaaatcat gcctggggcc aagaattctg
      241 gggctggaat taaagatgag aacacacaat aactgtaagt aatggcagag agatttaaat
      301 agcacacatc agcagaaaag aatggggaaa cctacagtac actgacttca ttgatacccc
      361 atttatcagc aattactgac tccattaaag gcagagttta cagcagacag agaaacagag
      421 cctaaaatat gtcccaacag atggacggag agtgtcagtg atgccgtatt tcaaaggcat
      481 ctgcaacgtt gttatcattg tacatggagt cagaaagaca gtgaaaaaca ctggagtaag
      541 ggccagcaaa tgatttactt gaccctgcat gggcagaact gacagcgaaa acctcattaa
      601 ttcctcaggt cattctggaa gacattaatt tggtttggac tcaggacgag aggagatttt
      661 ccagacatac accaggaatt atgaaatctc tatagccaga ggaaagta
//
LOCUS       KCOD01003244             300 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 360709pyr ultra-conserved element
            locus uce-5263, sequence.
ACCESSION   KCOD01003244
VERSION     KCOD01003244.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 300)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 300)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..300
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="360709pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>300
                     /note="ultra-conserved element locus uce-5263"
BASE COUNT          106 a           46 c           66 g           82 t
ORIGIN      
        1 cccaagagat ttatctagct gttgaagtag aaaatgaata ttttacagtt cacttgtctg
       61 atcaattacc tacaagctgc tgcagtattt tatagccagt gggagagctg tgtaggtgat
      121 gatagagaaa tctggaggga atctgctagc caactacaaa aaggggacta aaactgtgaa
      181 tgagccatca gtaacaatcc ttttgttcat aagggtctag ccagaaatta cagtgtaacc
      241 aattaaagta cataaatgat aatcagcaga atgtgaattc cagaggtgaa gaaatttgat
//
LOCUS       KCOD01003245             500 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 360816pyr ultra-conserved element
            locus uce-2230, sequence.
ACCESSION   KCOD01003245
VERSION     KCOD01003245.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 500)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 500)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..500
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="360816pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>500
                     /note="ultra-conserved element locus uce-2230"
BASE COUNT          171 a           68 c           78 g          183 t
ORIGIN      
        1 tctttaagct ctgattcttt aaacttgttt gagtttaggc cagctaaact acttctgcaa
       61 ctgatctcta agaaggaaaa tgcctgagaa catgtaagtt ataagtggct gtcttatctt
      121 tattacaaaa tattgtaaca aattcaatat cctagtcttc atttgtatga atggtttgta
      181 ttgtacataa tttaaccagt gttatttgag ctgcttatta atattaactt gtaattgtct
      241 ctctgcttgt tattggttaa aacaatcaag gaaatgagga atccatttta tcaatgtagc
      301 tgtaaactcc attaaaagac agaactatgt acaaagcatt tattcagcta aagtattgtt
      361 gaaagctata catatacaac attacagtct gtctgtattt agatatttta tttccagagg
      421 aaaaaatgaa ctgtacataa aaataaaatc ttaaagttga gtttcaatat gtactgtgta
      481 gatagtagtt taaagagttc
//
LOCUS       KCOD01003246             427 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 360922pyr ultra-conserved element
            locus uce-828, sequence.
ACCESSION   KCOD01003246
VERSION     KCOD01003246.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 427)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 427)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..427
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="360922pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>427
                     /note="ultra-conserved element locus uce-828"
BASE COUNT          132 a           78 c           58 g          159 t
ORIGIN      
        1 aaaattaact tttctcccat ttatgtaatg catataacta aacttccttc ctactgtgag
       61 acagtttcat ttattgttat ttgtaaacag cttagtaaag atgcatagtg gattggtcta
      121 gaaactcctt gaacagtttc ttttgaaata acactacata cgttaagctc aattacacat
      181 ccaaacagcc acaacacact tttggtaatt tattcattga tttaacatag tacccagaag
      241 agtcatgcct gctgtcaatt ttgtaatata ttatgtttta aatatactca tgctcaccca
      301 tgcacgccat taaggtgtgc ataaacctgt gtttttctct cttgacagct ataaatgttt
      361 gttattatta cacaaaacat atgttcatgt tgtttttgtc taaattattc tatctggggc
      421 tataaag
//
LOCUS       KCOD01003247             347 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 361024pyr ultra-conserved element
            locus uce-5816, sequence.
ACCESSION   KCOD01003247
VERSION     KCOD01003247.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 347)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 347)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..347
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="361024pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>347
                     /note="ultra-conserved element locus uce-5816"
BASE COUNT          102 a           57 c           61 g          127 t
ORIGIN      
        1 aaaattaaca aagtcgccca agagttaatc gctttttgat ggtttgtttt atttctgttt
       61 tgtaacaaat ggctgaaatc aattaaactg ctttactctc aactgatgaa gttaattatg
      121 atttgttatg gtatctgata tgtaaattat tagaaagcag acttacattc gatcgactgc
      181 ctgcgggcgg tactggatta atcattgtgt agatgttgtc acttgaattt gttgaatctg
      241 tggaacagtg aagcccagta agtcgggtga ttaattcatt tcttaattaa aacaaactca
      301 tgccacttga actcattctt ttgtatttta tcacccaaaa ttccctc
//
LOCUS       KCOD01003248             762 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 361135pyr ultra-conserved element
            locus uce-2389, sequence.
ACCESSION   KCOD01003248
VERSION     KCOD01003248.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 762)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 762)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..762
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="361135pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>762
                     /note="ultra-conserved element locus uce-2389"
BASE COUNT          241 a          169 c          140 g          212 t
ORIGIN      
        1 aaaataaggc tgttattgta tgacttttag agtgctcatg tagattaata ttctcacccc
       61 ttaacagctt tagacacatc agcatgaaca cagaaatgca acaagttgaa aattcaaagt
      121 acatttacta gtgtatttta tgccactcac attttcagtc agaccaccca gagcaaagaa
      181 aagaaaaagc cacaacaaaa aaagccctct gcattgtttg caatggaaat tgagtgtata
      241 ttctcttctt cctgtatttt ccagctagat taagctgttg tcttcacaat tgcctcccag
      301 ctgctgtgac ttgtgaaaac aacagaccct gctctgttgt ctgcagaaag cctggattgt
      361 tatgagtaac tttattgcag gcacatgagt gtgttaagac tttaaaacac gctcaaatgt
      421 catgtgcaca cccagtgacg ggcaagaata attatgaaaa aacaagaatt ctatgtctac
      481 gaaacagtgt cagacaaaat gggccattca ttgtgttcct ttgggaatgc ttggactctc
      541 cagccagaaa acaaaaaagg cacttttttc ctgccgtagg ctgaatactt agctttgcca
      601 tctgagccct aagaaaacat gggccccctc tctaactact ggctggcccg cacacagtaa
      661 aaagtattaa tgtccccctt ttttccagca gttccctctg tgtaggctgc ggccaatgta
      721 aagtcaatgc aaagacaaaa cagtttgcct aacattagta aa
//
LOCUS       KCOD01003249             632 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 361242pyr ultra-conserved element
            locus uce-4097, sequence.
ACCESSION   KCOD01003249
VERSION     KCOD01003249.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 632)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 632)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="361242pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>632
                     /note="ultra-conserved element locus uce-4097"
BASE COUNT          215 a          118 c          118 g          181 t
ORIGIN      
        1 tctgtgagca cagatttacc agtatggtag aaatcagagc tcttttgagg tttttttctg
       61 cagtgtattc aaagtgatca taaatcaagt ctagaattca aagacaatta aggacatagg
      121 cagtagactg agccatgcta acccaaaact ccaatcattt ttaaagtaag tggggagaac
      181 accggtcaac taggcgattg ttggtatccc ccaaaatgta atctccaagc tgaagaatgg
      241 cagctggcag aacagctggt gaataggatt aatgtcagaa gaaagaaata aaactcaaca
      301 tatgtccaag cctgcggtgc tgggactgag catgattgta ccccgacgga taccatgtgt
      361 acagctggaa agtgccactg tgccatgctt ctctacccca caaggtcatt tctaagaagt
      421 atagctaata tctgttttcc ttgagaactc tggctgctta agcttcataa tgtaaatatt
      481 ttggattatt ttaataatac aatctcaact aaaaagcaga ttagtattaa aaaggacaga
      541 ttgcactaat gtaaatataa ttttaaagct atttaaacct tttaatctca tctcattcag
      601 atttccacat tcaaggttca aataatacca aa
//
LOCUS       KCOD01003250             625 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 361354pyr ultra-conserved element
            locus uce-5601, sequence.
ACCESSION   KCOD01003250
VERSION     KCOD01003250.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 625)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="361354pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>625
                     /note="ultra-conserved element locus uce-5601"
BASE COUNT          158 a          143 c          116 g          208 t
ORIGIN      
        1 ctctctgatt aatgatggtg tgctgtcagt gtgtcatttt ccttaccctt gtagtgggat
       61 aacatgcaat tagagactga tgtcagcctg taaaactttg gtgtaaaatt ttggtcgcac
      121 caaaatacca tacttcttaa caaagctggc agacatgtcc tttggcagca gctgcttgcc
      181 atgtgattta aaacttcctg tcactataat tgatgtgttt ttattctttc cacttcctga
      241 agcctgatca gaattaaaat tgctgttgga atttcctgtc aaagcaactc atttattcgc
      301 cgagcgctgc actgacagta ctttgattgg acattgcctt cagctattct caggcagaga
      361 gattgctgtg aattatgctc cttgcccagg tttgacttcc ctgcatgcca catctgcaaa
      421 tatatacaga ttgtccatca tgtggtaacc ttgtcctaat gaaaactcca catgtaaaat
      481 gttagatttg aatatcaaac ttggccacct gctggggccc tggcttttgt gtttttttag
      541 gaaaccccag agttcttcaa ctgattgtct caccgtaact tccatgttac ctaccaaaaa
      601 gacctctgct ctatctctac actga
//
LOCUS       KCOD01003251             285 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 361463pyr ultra-conserved element
            locus uce-1041, sequence.
ACCESSION   KCOD01003251
VERSION     KCOD01003251.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 285)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 285)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..285
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="361463pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>285
                     /note="ultra-conserved element locus uce-1041"
BASE COUNT          102 a           48 c           47 g           88 t
ORIGIN      
        1 ggcgtgaatt ttcgtaatgt tccccccaag acatcccgaa agtgactcac acgagaaaac
       61 agactgaagt cacagctgga agcacgtcaa ggatcatttc catttttaca tgattaattt
      121 gaatttaata tcttaaatca aaacctgatt aatttaaata aaattttgat ggtgccctgc
      181 ttctaatata cattgcagta attagattca gcttaatgtg atttttttac ataattaaaa
      241 aaaagagcaa gtcaagtgta acaatgcaga gttggtacaa atctg
//
LOCUS       KCOD01003252             585 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 361569pyr ultra-conserved element
            locus uce-7816, sequence.
ACCESSION   KCOD01003252
VERSION     KCOD01003252.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 585)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 585)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..585
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="361569pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>585
                     /note="ultra-conserved element locus uce-7816"
BASE COUNT          192 a          118 c           94 g          181 t
ORIGIN      
        1 ttactcaagg attgaggaga aagacatttg aatatgtaca tctcatccaa taaatactga
       61 gtataatgca aacatcttaa agggaagaca tcaaatacag ttttgtagct tgattcaaag
      121 agcatgtaca ttcacctctt aattcattta ctcagagctg taccactaac tcatcagata
      181 aacaagttca tcccaccagg cagtgtcagt ttttagcagg tgtgcctgaa ggactcttcc
      241 tttctgctct ttgaatcatt ctgtagacac taatgagcat ccctcttcag ctttaattat
      301 tggtccctga caagtcaaca taataggaat cagcttaacc aagcatactc cccagtgaca
      361 tgttcaatta ctcaggttgt acttctctgc aagaggtctg agaggttgct aattcaacaa
      421 aaaaataaac agaggtattg gttacagttt atcttttgac ccttatgtca ccaaatctag
      481 caagatacct cctcctggaa tggagcagaa gattaaatac ataaaaatta ctattctggt
      541 tttacttttt aaataaaatt aattgctacc taaagtgatt cacgt
//
LOCUS       KCOD01003253             772 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 361679pyr ultra-conserved element
            locus uce-889, sequence.
ACCESSION   KCOD01003253
VERSION     KCOD01003253.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 772)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 772)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..772
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="361679pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>772
                     /note="ultra-conserved element locus uce-889"
BASE COUNT          236 a          137 c          158 g          241 t
ORIGIN      
        1 aaaaagagct ctttgggaca tcatggagct ttactcaaac agtccatcaa ggttatgagt
       61 aatgtatttg agaacttcag taaggacggc tgggaggatg tgagtgaaag caggtacggc
      121 tctcattaac ttagccctgt agaggggaca ctgtgcatat gtaaagcact agcaaatgga
      181 gattgaattt caactactgt tgatttggta ttcaaaaaaa atactgtcag atcctttgaa
      241 atatcttggg aggtcttgtt ctgagcttat tgactgaaat ttgcatgcga aattagccac
      301 aactgcatga gtatttgaat aggtgccagg aaacccaaaa gaaggcaatg cttgatttct
      361 tccagtgatg ctattttcat gcagtcatga ggcttgaaat tgacagtttg gcaggttgat
      421 ttaatttgct ggccctttgc atattcacca ctgacagcta aggattccca ggcaagccta
      481 ctaagtcagt ttagttatct tgtgacatgc cgacccggga ggagaatttt ttccccttaa
      541 tttagttaga taaattttga atgacccatt tcagcttgct agcagatgtc tacaagctgt
      601 ttaacatcct ttaaattaag aaccatccac actaattatt tcatgtatgt tttatgcagt
      661 cattgtacta actttaattg aatgatggtt aaaaatcagt tctttaaagg taatggttac
      721 cacatacaat ctcagtcatg aatcaaaagc tctcagaaaa ttccattggc aa
//
LOCUS       KCOD01003254             618 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 361789pyr ultra-conserved element
            locus uce-2623, sequence.
ACCESSION   KCOD01003254
VERSION     KCOD01003254.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 618)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 618)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="361789pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>618
                     /note="ultra-conserved element locus uce-2623"
BASE COUNT          176 a          117 c          134 g          191 t
ORIGIN      
        1 ctgaacagaa ggtgtttagt ctgaatgctg gcttcttttc agcaaatcaa gaagtgagta
       61 tgtttcagac aactttgtaa atcacaatct gaacacaaac catcatattt cacttttcat
      121 gggtttcata cagagatagg aaatttgccg taagatcaaa cacaagagaa aaagacaagt
      181 ggttgcattt tattgtgacc agggttgaac ccttctattt acagttgtgg agaaagaaaa
      241 tattttcctg accacagttg aagagagacc ctgacagggc tttcctgctt gccatctccc
      301 atgtcatcag tgttttctgg gagaagaatt tgaggtggtt ttccacctaa gtggttacag
      361 ctgtttccac aggatcagtc agatggagtt tctgcctctg tttattttgg ctctgatttt
      421 cggctggagc ccagcaggat gacagtgttt gctcagggtc ttgggacttt ggacaaacat
      481 tccagaattt ctgacttctt aacattaatg tttgatgaat tctgctctta atttcttctg
      541 gaaaaatgtc aagcccactg ccttagtcct acaacagaga aaaggagaaa atcatttgct
      601 aggctgtgaa aatgagca
//
LOCUS       KCOD01003255             462 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 361890pyr ultra-conserved element
            locus uce-5035, sequence.
ACCESSION   KCOD01003255
VERSION     KCOD01003255.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 462)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 462)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..462
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="361890pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>462
                     /note="ultra-conserved element locus uce-5035"
BASE COUNT          167 a           85 c           72 g          138 t
ORIGIN      
        1 aattgtatgg gaagccccgt attcaaatac ttctacaaaa tatatgtcat gctagaaaat
       61 attctattgt caatccaaat agaacacaaa ctaaaatgag ataattggga aggtgcccat
      121 aaagtcagcc tgaatatatt atcacaagta tatgtgagat aatatttgtt ttaaaaagat
      181 tctatggcac tgtaaactca gtctcattag agactgcatt taaaaggctt ataaagttac
      241 tcattaatgt tatcttgttg tatctccaca gctttttcat taaagaaaat tcagcagaaa
      301 gcattttctc ctgatagcag gaaccaattt gcaataaatg ttctggaaac cactagggaa
      361 gccattactg aggtctaata aaaacagaca agcgtaactt gttctatatt tttgtttcaa
      421 tcacatacag atgagacccc gctctccaca ccaaccgcaa ga
//
LOCUS       KCOD01003256             731 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 362001pyr ultra-conserved element
            locus uce-7277, sequence.
ACCESSION   KCOD01003256
VERSION     KCOD01003256.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 731)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 731)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..731
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="362001pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>731
                     /note="ultra-conserved element locus uce-7277"
BASE COUNT          221 a          155 c          139 g          216 t
ORIGIN      
        1 ttgccataat caaataaggc tgcagtgctt atattctaat taaaaaataa tctctgatat
       61 ttaatttaga aacctggaag actgtaccag caaaattatg gctacaacct gcaccaacca
      121 ctcgatttac ccacagacag caaaaaaatt agtattaaac aagcaaacgc tgcactgctc
      181 gatatgtatt aaaacaacta ttgcacccag ttattaattt gcactattca cttttaaatg
      241 cagcaaatac ctcattaatt taattttagg tgcccaccag tttatattgc attttacagt
      301 ctagaaggca atttactatt aactggcaat tacatacaga atgattgtta attctgctcc
      361 taagtgctag ctgcttgaaa attgttatct ctctctaatt tttgaccttc ttacaacagg
      421 ggtgaggtac actgggaata caaaggactg gtagagaaga gccggacatg tcatttgtga
      481 ctcattcttt taattcaccg tgctaatcaa ctgaactgcc acagtctccc aaggtaattg
      541 tatctttata atagttgaaa gcagcgggca aaaaggcatg gatagatggg gaaaggcctt
      601 gcccctgctg ggagcggcgc gctcctgctt ctgcgccggg ctaatggggg ctttggagaa
      661 aaatctggaa ctttcgcatc tccctgccct gatggtttaa tgtctcaact tctgcgctca
      721 caaaggcttt g
//
LOCUS       KCOD01003257             292 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 362105pyr ultra-conserved element
            locus uce-3755, sequence.
ACCESSION   KCOD01003257
VERSION     KCOD01003257.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 292)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 292)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..292
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="362105pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>292
                     /note="ultra-conserved element locus uce-3755"
BASE COUNT          103 a           43 c           56 g           90 t
ORIGIN      
        1 aaaaactgat gatgtcaaga gggagcaagt tgtgatgaaa accaattgtc ttcctcaaaa
       61 attaagctac tctttttctt cttgttttaa atctagagta aaagaaatgt ttaggtaagg
      121 tttatcttga atcttaattg ccttaatttt aaggacgtca aaggctctca aggcaagctg
      181 tcaacgtctt gttagaaaac ccgagaatga attgaaactg ctcacaccgg tgctggtgca
      241 gaagtttaat agactgagtt tttaaaaaat aaactgtaca gtttaaaaga aa
//
LOCUS       KCOD01003258             597 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 362207pyr ultra-conserved element
            locus uce-6136, sequence.
ACCESSION   KCOD01003258
VERSION     KCOD01003258.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 597)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 597)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..597
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="362207pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>597
                     /note="ultra-conserved element locus uce-6136"
BASE COUNT          162 a          158 c          126 g          151 t
ORIGIN      
        1 cggccccggt gacgcggtcc cctccgagcg acgcgccacc tcatatgagc gccaggaaac
       61 tggttttgtc acttgcttta agacgcatcc tgcctggtct ctcttgtttc attacccgaa
      121 atcccagaga aaccacccgg caggatcaat cagtcacagg cagccagaca gttttcttgt
      181 actttattaa agtgtaatca aacatcggtt aagtggaaaa taaatatcca gatctaataa
      241 gctgctcagt cagatcgtgt aaatgcaaat tacaagctgg ttcccatctc cccgccgggg
      301 gactgaacaa gccacagcaa ttgcttcatc caccgcgatt gtaaatcaac taaaataatg
      361 gctggataat gaccagtttg cggtttcaag cagattgaat gataacaaac tgcgtgtgtc
      421 gcaccagctt ttcatttagc atctcatcat ggagcgagca gctcgcctaa cagcttggct
      481 gcctcattag gttgttgtct gcggcttgta aattcaggct gcagccagca gattacctga
      541 caaagttcct gatagggaaa aactagacaa ttcaatccag tccttcaatc cctccct
//
LOCUS       KCOD01003259             603 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 362319pyr ultra-conserved element
            locus uce-1085, sequence.
ACCESSION   KCOD01003259
VERSION     KCOD01003259.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 603)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 603)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="362319pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>603
                     /note="ultra-conserved element locus uce-1085"
BASE COUNT          161 a          133 c          132 g          177 t
ORIGIN      
        1 ttccctttgc tttctgcttc ctgacatttc aaaaatgtcc tgccgtagcc tcaggaaaat
       61 aaccgagcga ataacttaaa aatatccagg attgctccag ttaaggaatt agcctgcctt
      121 gcctctgcaa taaagctctg tcagccctgc cctccttgct cgagttttaa ttctagtctc
      181 taatctcagc cgctcctgtg ataaattaat tgtaatgata gaggccccag ttacgaggtc
      241 tgcaccgttt gcttgtaatc tgagcgacag gtttagggcc tgctttattt aagatgcgag
      301 ggtaattaca tgggagttag catatgcagg cagggagata tgattcattc tcccagcgac
      361 ggccatgaca cagctgtttg tcggataaaa tagaggaacc gtgttgttac aaaatgttcc
      421 ccttattata cctcattaaa aacaaggctg cgataagtca gacctggcaa tgaataaaat
      481 gtattgcccc ctgtaaaagc tgataggaga gaaagagggt cttccgagca ggcttgggtc
      541 atttatttat ttttttttca tgctccctct tctgcctcga actggctgct ggaggaaaga
      601 aaa
//
LOCUS       KCOD01003260             344 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 362423pyr ultra-conserved element
            locus uce-2135, sequence.
ACCESSION   KCOD01003260
VERSION     KCOD01003260.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 344)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 344)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..344
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="362423pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>344
                     /note="ultra-conserved element locus uce-2135"
BASE COUNT          118 a           56 c           38 g          132 t
ORIGIN      
        1 ttttttttaa ttaactgctc taattaacaa ggaaaccatc ctccccctga attagtttat
       61 ctaattttca tctttattca aagcaaaatg acaatgatta attgaaaatt taataagcgg
      121 taattattaa cttggcaaac ctagtaccaa ttaacactct attaaaacta attatgacat
      181 gtttcattca agtgtttgca cttaattgtt tcatgcactt aaaacccacc ttaattaaat
      241 gttgtgttta attaaaacca tagatttcta taaaaatgtt ttactgtaga ttaaaatcaa
      301 cggtgttatt tgagttttag tccatgtatt tagcccatgt acct
//
LOCUS       KCOD01003261             521 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 362632pyr ultra-conserved element
            locus uce-3605, sequence.
ACCESSION   KCOD01003261
VERSION     KCOD01003261.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 521)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 521)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..521
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="362632pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>521
                     /note="ultra-conserved element locus uce-3605"
BASE COUNT          171 a           93 c          108 g          149 t
ORIGIN      
        1 taaataataa atatttggaa gaatatagta tttccaccta ttgtacttaa aagctcaaaa
       61 attcaagccc atgcatagag ctgctctgaa agccacactg aatatattgc ctttgtttgt
      121 ttaggttatg cacaaataaa tattgggatg acagttaaag acacatcctt gaagtagtct
      181 acccaataaa tttggaaaga ggaggaggaa ttctagctgt ataagattct ctttgttgcc
      241 tgcttgttaa ggaatccttc tggcacaact gaggggatta tgaattcaca tgtgaattta
      301 tcccctatta aacttttagt gaaagggtca gttagcagga atgataaagc tcaagcacac
      361 cagtcacatg ctggcagagc atctgtgact ggctctactc aggcatatca ctggtttata
      421 gctttaacat caagaggaag ctacaggggc gggcagaaaa cagtccactt ctgaaaagat
      481 tggaaatagt gaaaagtaca gtttcacggg tcacaccttt t
//
LOCUS       KCOD01003262             542 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 362742pyr ultra-conserved element
            locus uce-3077, sequence.
ACCESSION   KCOD01003262
VERSION     KCOD01003262.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 542)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 542)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..542
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="362742pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>542
                     /note="ultra-conserved element locus uce-3077"
BASE COUNT          163 a          100 c          102 g          177 t
ORIGIN      
        1 ggctgtttag agcacatctc cggttagtgg tgcattcgga agcagctgat ttccctgcac
       61 ccaaaaacct ttgagaattt aaatattatt tctacttagg agtaaactgc tcatcatcac
      121 cctagtttga ctaaagattt aagctgaagt acgtgagcag catagaatac atttcttgct
      181 cagaaacaca aacagctagc caggctctaa gtatattatc aggcaagttc tttcagaaac
      241 gtattgctaa agaagcttaa cattaattat tgtaactttg ggaagattac atccacacta
      301 gccttgtaag aagcagcata cacttcttga cctccaatgc tagagcttta agacacaaga
      361 atggcatttt accaacttta atgggataac cagtattaat ctttcagcag taagggaaga
      421 aaaagtgttt agagtataat acccttctga gttctgatag aggctgcctg ttgtgtgtac
      481 tgcagtcata attcatttgt ttctctctgt tgttttggtt ttgttttctt aattatttaa
      541 gg
//
LOCUS       KCOD01003263             831 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 362854pyr ultra-conserved element
            locus uce-249, sequence.
ACCESSION   KCOD01003263
VERSION     KCOD01003263.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 831)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 831)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..831
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="362854pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>831
                     /note="ultra-conserved element locus uce-249"
BASE COUNT          247 a          198 c          164 g          222 t
ORIGIN      
        1 gcaagtgacc agagaaatgc ataccagctc cactggagaa atctgtgttg ccacccttaa
       61 tgcctcctga catctctacc aggtcctctc tgtaggtgac cccaccataa caatcctggc
      121 tggcccgtcg gttgtgggcg aggagacggg agataacgtg ggcagtgtct gcgccacaga
      181 aatctcttaa aatgtcattt gtagaggaaa acaaaattgt tgcaagaaca acagaaactg
      241 cgaaaaaatg ggagccccta aagcctttaa cgcactagaa aatttatgaa aacatgaata
      301 aaaggtaact cattcagtgt cagccttaca tatttatagt ttaaaaatta gtcaaagttt
      361 atgtcctgag gttgcaccta caggaagcca gatgtgtgcc ttctgcatgt gacctaagac
      421 aggcctgaag caacaactag ataatttctc gctcatactc cacaccgtcg atcgcggcgg
      481 ctttctgagg tgagagaatc tgacagcact aactctccag ggcagaactt tccagtcaag
      541 tggatcaacg gactgaaaat ctcttatgaa tagtcattag gccttcatta caaacccctc
      601 acaacccagt tctcttttcg caaccaaatg ccttttgtca tcttcacaag gtgcatcatt
      661 taattaccaa ttgatttctt tatatatgac aacatgtcag atagcaaaat acagtgtatc
      721 tcccttaggg ggagaagtct gttaactatc agcatgccag attactgaat ttagctggaa
      781 gacagctatt ccctccactg cgcctttatt ttaactcgct ttcgactttt c
//
LOCUS       KCOD01003264             491 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 362963pyr ultra-conserved element
            locus uce-4294, sequence.
ACCESSION   KCOD01003264
VERSION     KCOD01003264.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 491)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 491)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="362963pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>491
                     /note="ultra-conserved element locus uce-4294"
BASE COUNT          154 a           98 c           81 g          158 t
ORIGIN      
        1 taaattcttg aaaagcctta aatctgatct ttaagtttga cagatatggt atatttgtgt
       61 ggtggttttt acctactgta gctctctgtc ctctgagtac atctaagaaa aacctgtgag
      121 actgttaaat gggagcttca cctgccagtc tgtactgcaa gatctctata gcaaccaaac
      181 ataaatcaag aaaatggccc cttttgtaag ttggttaata ggcacaacat gcttctttag
      241 aaaatccaac tattctttca atagactttg attgaaagtc agccttttct acagacacat
      301 tcacattcac atctagtagc agcttgtatg gctgtccaag gtctaattta ttacccttta
      361 aagattgggc aaagaaaaaa tggttctcgg aacaatgttt acattcagag gcataagcac
      421 agtgccacaa aagagcatcc ttttgttctg aacccagaat attaatcttt aacctactac
      481 ttatttcaac t
//
LOCUS       KCOD01003265             709 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 363066pyr ultra-conserved element
            locus uce-1306, sequence.
ACCESSION   KCOD01003265
VERSION     KCOD01003265.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 709)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 709)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="363066pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>709
                     /note="ultra-conserved element locus uce-1306"
BASE COUNT          194 a          134 c          153 g          228 t
ORIGIN      
        1 cacatgaaaa caaatgcgag ccatcatatt tcattaactg gctgcccccc gttcaagtgc
       61 ccttttttga tgtcagagcg catcctgaca gaaatcagga agatacgtgt gattaaggcc
      121 agcaataata gttagtgcat tgtattgtaa attacctttc tgggccctgc tactttatca
      181 gccccactgg ccttggcttg ggtacatttt tgactactct gtatatacag tgtattagcg
      241 caatggagat cattatgtgg cctgtatttg agtcattttt atttaagatg ccaaacaata
      301 agctgttgat tgggggaaca agaggcgaac aataatgttc tgtgtcacat aatacaccac
      361 cattttccag ctttgcttta gaagggccct ctttattgtt tttgtataaa aatggttctt
      421 aggaggagga atattttgct gaggtatgtc attattttgc aaatttctat tatctcatca
      481 tgttgtcttc attgtaaatt gcagctaatt aggaacctag ttagagcccc agctttgagg
      541 ctggcttttt tgtgaaaaga gcccaccgat taccgcacta caagagagga agggagagaa
      601 aaaggagatt aatctggtta cctaggcgac actcgcttcc atctgcgagg aacaatacat
      661 ttttgtttcc ttggctcagt tcagatctgt tttgtttagg gggaaaaaa
//
LOCUS       KCOD01003266             491 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 363174pyr ultra-conserved element
            locus uce-380, sequence.
ACCESSION   KCOD01003266
VERSION     KCOD01003266.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 491)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 491)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="363174pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>491
                     /note="ultra-conserved element locus uce-380"
BASE COUNT          153 a           95 c           98 g          145 t
ORIGIN      
        1 ggggatattt acagcaccta aatcagtgtt gaggacatgc agaatattga gggatcaact
       61 ctacttattc caaatgcact ttcatatttt gactgcccga ccgaaatcac tgtgctggaa
      121 tgataatgag aagttttttt atgatggttg gagagaactt tatggaagtt gataaatctc
      181 atcttgtagg tttcaatttc tcattgagat gggcagaata cattgatgct gcatttcaaa
      241 ttggccagat caggaggaac agcagctaaa atccattaca acccaattac atccatcagc
      301 tgaagctgtg tgcattcact cgtgaacatc agcatttaat ccataaagag gaactaatga
      361 gaaatttgaa aatggaatcc atgcatcagt agcttttttt gctgggatta atgaactgcc
      421 agaacattgt caacacactg cgaacccatt ctctgcaggt ttgtttactg aaagattgca
      481 cccatccctc a
//
LOCUS       KCOD01003267             638 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 363387pyr ultra-conserved element
            locus uce-3281, sequence.
ACCESSION   KCOD01003267
VERSION     KCOD01003267.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 638)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 638)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..638
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="363387pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>638
                     /note="ultra-conserved element locus uce-3281"
BASE COUNT          175 a          130 c          121 g          212 t
ORIGIN      
        1 tgggttaatg gcttccttca gtaatggttg ctagaaaaaa gttattttaa agatgtgaca
       61 ttctaccttg tttgtagaca aagtagcagt gtgtgaatga agggaaatgt ctaggtgatc
      121 tgaaattgca atttgcagca ggatccaata ttcaatgtgc atatctcagc accaactttc
      181 tgccatttca agcccctctc ttactctgct ccctaccccg gctccccgag cgcattttta
      241 tggctttaat ttaaacgagc gcttcttgat atcttgttta caaagctgcc aaagtgaaaa
      301 atacctgtat tatatgaggc ttgcagttcc agagttatct cagcactaca acacaacatc
      361 attatccagt ctgcccctta tcactcagct ggtaatacag actaccgaga gacttgtgcc
      421 acttttgtta cagctttata tgctcaggct tattggtgat atcttcctct ccaactttgt
      481 aaagatcttc aaactggtac aagcctgaga ctgttcttga aagattagat tcttcttagt
      541 gacttcttga aggaataggt gaatcataga aagtaacttt ttgatttatt ttactatctt
      601 cttgtcaatt gaataagctg ctatgggaag ggtgtagc
//
LOCUS       KCOD01003268             801 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 363498pyr ultra-conserved element
            locus uce-2952, sequence.
ACCESSION   KCOD01003268
VERSION     KCOD01003268.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 801)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 801)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..801
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="363498pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>801
                     /note="ultra-conserved element locus uce-2952"
BASE COUNT          281 a          137 c          149 g          234 t
ORIGIN      
        1 agatatttta tgcaagtcat aaaatttcag tggtatatgg aaggggtctt ggagaaatac
       61 acatatgact ataaacaagc catcattctg gtaagaggaa atacaaacaa ccagaataaa
      121 aatagttgat gcacaaaagc cataatgagg gggttgctca aaaaataact tctactttga
      181 atggtttgga tgaaatacaa attatccaca gaaaagtgtg gactggcata aatgtttgta
      241 caaaattata agtatatttc tagaagtatg cgagagacaa ccgcctgcat gctgcacaag
      301 gtcccaacaa cgctctgtgt aagtgctagt gcacagagtc caaaccactg cattttaatt
      361 actatgcagc ctcagatata ttgcctttga tatggaaata ttcttgttct ctcatcttca
      421 catacggtct catgcacaga aatctttatc tgattcataa aaaataaact agaatccaat
      481 ctcaacacct gacctcagtg cttagaagtt ttttactaag catggtgtca ctataaaaag
      541 aatgggtaat attggtgtaa agttagatat ttggagcaat gatatgaagg atttgcagtt
      601 aggaatcaaa tcaatactgc acctctgagg ttttagagtt tcctattgcc ttttgtcagt
      661 ctaccagtga ctggagacac aattgactac acctttctgt ctagctcaag aagaaagaaa
      721 aaatatttaa atgacatcct gtcttaccac ggatagaaga gatgcacttg ctgtatggaa
      781 tagttctgaa atctaataaa t
//
LOCUS       KCOD01003269             546 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 363610pyr ultra-conserved element
            locus uce-3549, sequence.
ACCESSION   KCOD01003269
VERSION     KCOD01003269.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 546)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 546)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..546
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="363610pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>546
                     /note="ultra-conserved element locus uce-3549"
BASE COUNT          182 a          106 c           84 g          174 t
ORIGIN      
        1 ttctttaacc ttctaagata caaaagacat cttaaaccca tacagagtgt taaatcctaa
       61 atattttcta agcagctatg atctacttgc cacattagag ttgtaaatta aggtctcatg
      121 tgttgcagga accagccttc catatcacag ttttctcccc tgaatgaggc aagagtcagt
      181 cagtaaatat atgtggtcaa cctcagattt gccacactgg gagttcacat gtatttttaa
      241 ctgccttcaa ttgttaatgt attcctcaaa tgagatgcat caccttgaag aatgactttt
      301 tgccctctgg gaatacgcca aacaagtatt tcattcacta tgataatcag ttctacctcc
      361 agcaacatat gaaacccaaa tttaataggc aatagtgatt aggttttaag acacagagtc
      421 atcactgtcc actgaataat aacaacatat ttggttttag gaatcattaa tgaatctaac
      481 tatcaacatt tggggaatat tcttaataaa tataacgtgt cttgtcatta aaataatgat
      541 agcagc
//
LOCUS       KCOD01003270             790 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 363718pyr ultra-conserved element
            locus uce-3477, sequence.
ACCESSION   KCOD01003270
VERSION     KCOD01003270.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 790)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 790)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..790
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="363718pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>790
                     /note="ultra-conserved element locus uce-3477"
BASE COUNT          223 a          148 c          160 g          259 t
ORIGIN      
        1 atttattatt aatactgcaa tcccactaaa ttctttgaga caatggaccg ttaagtagta
       61 tgaggctgac tgaagtgcct ccaccattta ggagttagca actaaacggc attatataat
      121 ttgagtcaat ttctgcccaa gattccaggg agtgaactca tcaggattac tcattgttaa
      181 aggagtgcct cagggtttag tactttgact ttattatttt ttcctttagc tattcaaaac
      241 cttggttggt ttgtaggaaa tgttaattat cctttctgtg ctgatgtccc actgctgttt
      301 tataagcaga gctttgcttg tacaacttca aaagaaatct tcaaactcaa tattaccaag
      361 tttgaatatt atctaattaa cctcccagtc tgtcatgcct tgttggttat catgaaataa
      421 tcacagcccc tcaggtgttg aagctctaga tgcagctaag tgcctctaat tccctaaggg
      481 ggtgattagc tcatgataac aatgctccct cgagttgttt tattgctttt ataaaaagac
      541 tttattgtgg gggaaatgtt tatttttatg caggaggaag atggagctga cagttgaggc
      601 tggtgagtga ctgcagctgt tactcctgag ccctggtgca aaccttgata tatttgctca
      661 tttctgatac tccttggaca atcacaatat gctggctggt aattaagctc ctgctgaact
      721 cacagtgtga agacagaaaa taaatacttc tggttctgcc agaggtgagc agttacaaga
      781 caaagcaaaa
//
LOCUS       KCOD01003271             278 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 363823pyr ultra-conserved element
            locus uce-7265, sequence.
ACCESSION   KCOD01003271
VERSION     KCOD01003271.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 278)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 278)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..278
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="363823pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>278
                     /note="ultra-conserved element locus uce-7265"
BASE COUNT           86 a           54 c           45 g           93 t
ORIGIN      
        1 agtgctttga gaggcatttc ctcccctccc ccccttagaa agatgcagta attaaaacct
       61 aattattatc ttcattttaa acaaaaccta aagtgaatac caattaataa caacatacta
      121 atgagcatct gctgtgatga aattgaatat gaatgtgctg caaatttcgg gtaatttatt
      181 ttttcgggga agtgccactg gtctcaatct actgctggaa gattgtatag actgtacaca
      241 tcttccatca tgtctcgtgc agcaattttt tattttaa
//
LOCUS       KCOD01003272             643 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 363933pyr ultra-conserved element
            locus uce-2614, sequence.
ACCESSION   KCOD01003272
VERSION     KCOD01003272.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 643)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 643)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="363933pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>643
                     /note="ultra-conserved element locus uce-2614"
BASE COUNT          228 a          116 c          104 g          195 t
ORIGIN      
        1 gccaaagcag tgtaaattgt cagaagaaat ttaagcagcg tttaaacaac ttctcttgca
       61 aatcagaaca tctttcaaac cgaaattata tttaaatctc gaaaacgaag tgccctttcc
      121 ctttagctac gaaaaaataa ggttatgagg aataaaagtg atgaattagc cactgcgtta
      181 agcgataata aatcaggctt ggtgtgattc gcgatcaatt ccaattagtc atgaatatgc
      241 taagtaaagc acagtacact gttttagaca gttatttctt cattaaggat cactcagtga
      301 tttctttcac aaatgctcta atctgatttc cttttgattt ccattagaga cagtgaataa
      361 tgacatttaa tttagccctg caccataaac ccaaagatat ttgttgtaat tgaattactg
      421 cctgctcctc actatggtct cataactttc aattataacc ctgacagctg ggtgatatga
      481 gtttccagta caacactaaa aataaaaggt taataaggac tagctaccat aggagcttca
      541 atttatttac agcaaatttc cacgctaaat tgaaactata tcctttaaca gcaagggaca
      601 agagattcag ataggaatta gagaacaatt ctaaaagtat tag
//
LOCUS       KCOD01003273             270 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 364027pyr ultra-conserved element
            locus uce-5495, sequence.
ACCESSION   KCOD01003273
VERSION     KCOD01003273.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 270)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 270)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..270
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="364027pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>270
                     /note="ultra-conserved element locus uce-5495"
BASE COUNT           99 a           33 c           45 g           93 t
ORIGIN      
        1 tgcccagggt gaactataaa tacaaagata attttaatta atttatttat ttctttacac
       61 ataactgaaa gtgatgttac agtacataag ttatttacaa ctgtgcagta atgtgttgca
      121 aaataaatta tctagaaggc agcaaaagta cattgttaat gtatataaaa actgtacagc
      181 atttatggga tacaattttt ctttatatga gtattggctc tgtagtgttt tcaagttatg
      241 ttctcagaaa gagaaacgaa atgcccaaga
//
LOCUS       KCOD01003274             288 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 364135pyr ultra-conserved element
            locus uce-7162, sequence.
ACCESSION   KCOD01003274
VERSION     KCOD01003274.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 288)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 288)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..288
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="364135pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>288
                     /note="ultra-conserved element locus uce-7162"
BASE COUNT           94 a           36 c           60 g           98 t
ORIGIN      
        1 tttagcttgc ctgtgtgctg cttgaatatg aaattttaat tattcctctt aattatggtg
       61 ctttcaccaa aaagagggaa atcattggtc aggtacaaaa agaaactgct tggtatttga
      121 aggaatttga taattttgtt gtagttcata gcttggcagg tggtaataat gctatgccag
      181 cactgtcaaa atatgaaaat taaagtgacg atgggtttta atgaaatcca tttgacaaat
      241 ataattaagg tgttttaata tgaagccctg taataaagac taccggtg
//
LOCUS       KCOD01003275             348 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 364243pyr ultra-conserved element
            locus uce-1168, sequence.
ACCESSION   KCOD01003275
VERSION     KCOD01003275.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 348)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 348)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..348
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="364243pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>348
                     /note="ultra-conserved element locus uce-1168"
BASE COUNT          107 a           55 c           51 g          135 t
ORIGIN      
        1 aggcagggaa atgtgtaaat tctcctcccc aacccctatg tatttcatta tacattttga
       61 actgttttat aaattcagtt accagtcact acttagtaat tgatgatttg tgaaaattcc
      121 tgtttcagca gaattttaaa tgaaggcgaa agcaagccct acatgctttc tacttatttg
      181 aatgtttctc aagtatttta tattaaaaaa cagtgcctct gtttttagaa ctactgctca
      241 gtaaagctgt ttaaaccatt tctggtagct aatgacaatt ttatattaaa ttgtatatta
      301 actttagtga gactgatttt tttagttgtt tacagtacaa atacttgt
//
LOCUS       KCOD01003276             434 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 364352pyr ultra-conserved element
            locus uce-3830, sequence.
ACCESSION   KCOD01003276
VERSION     KCOD01003276.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 434)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 434)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..434
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="364352pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>434
                     /note="ultra-conserved element locus uce-3830"
BASE COUNT          106 a           96 c           85 g          147 t
ORIGIN      
        1 gcaaacgtgg agaacttgtg tttccttcat ggctgaaacc tttttatgac ttttcttaaa
       61 actacttttg catgtttagt aggaatcagt ttgcattgca tgtctccttc caaatctcat
      121 cttccccagg atgagtttgc tcccaaatga agtagaggcg ttttccttca ggctgcatgt
      181 tatcctctta tccctactgt tttggaatag agcgtaacca gctggagaac tgtaagaagc
      241 ctgataatgc agctattttc tgctgtcccg tcttaatctt gttacacaaa tggttgtgaa
      301 gagattcatg aattttaatt ttgccctctg cattagtgcc tcatgtcact catacacagc
      361 tgccttctat ggggagttgt tcacccctcc tcctacaaca ggggaaaaaa ttagttacaa
      421 tcttggcagt agtg
//
LOCUS       KCOD01003277             617 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 364459pyr ultra-conserved element
            locus uce-5943, sequence.
ACCESSION   KCOD01003277
VERSION     KCOD01003277.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 617)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 617)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="364459pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>617
                     /note="ultra-conserved element locus uce-5943"
BASE COUNT          151 a          152 c          145 g          169 t
ORIGIN      
        1 tcccgataaa ggctttttgc cttattttgg agggcgggcg ggcgcgtgtg cgcgggcggg
       61 gaggagtaca gtttgaagga gttgttagaa agaacagaag tgtgcctagc ctgaggcaat
      121 tcactgctca gcctattagc tgtggtgacc ttgcctattc ctttgtcttt gtattttcct
      181 cctgctgctt tccttctcaa gcattccctt ttgttgtctt agagaatgag aaaaatgcca
      241 tatctccctc cagccccctg tagtttgaac tcctgagatc tggtgacaca cccagcctgt
      301 agccaccttt agccctgcgt gaacttggca ggaggagagt caaccattaa atactgagca
      361 gagactcaaa cagatagaaa tgcttgccca cactcctacc ccaggctgcc tttttattgc
      421 ctgtccttca tacagaggga aagagccttg tagccaagtt ttgacactgc cacatatggc
      481 ctcctccatc aatctgacta atcaagcatc aaggagaagc aaagccaact taattgccag
      541 ccagatatct ctggtctcac ttgacgcaac ttgaaattga tataagtctg ggaaaggagc
      601 tttagctgat ggtggat
//
LOCUS       KCOD01003278             623 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 364569pyr ultra-conserved element
            locus uce-7171, sequence.
ACCESSION   KCOD01003278
VERSION     KCOD01003278.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 623)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 623)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="364569pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>623
                     /note="ultra-conserved element locus uce-7171"
BASE COUNT          202 a          127 c          109 g          185 t
ORIGIN      
        1 cagacacttc caggcctggc agttatttag acagctgtca atcaaaatgt ctcacagcta
       61 ccctaccgtg tcagccatca gctaacccac actttcccag ggacgtctta gcatggcatc
      121 tttgttctgt tttcagataa acagatccaa tttctcaaca aacagactgc tgcagtcctt
      181 ttgataacaa tgtaataatt caaaacaaat gattctaggc tttgatgata gcacttttat
      241 gggtcatgaa gaaatcctcc caccaacatc tgtttgattt tatctacttg aactttatcc
      301 tccagttgaa gatttataag ctgaaatcat cccagcctat taaagtcagg ctaatgttaa
      361 agcactaaca cagagaatga aagtttttgc agtcatccac cttttgaaat cctgccgtga
      421 ggaaaaatat caaaagttag agagatgtat gtttaaatat gctagaagtc tgcattctgc
      481 acagagccct ggatgactga gagattaagg aatctaactg ttgccctact gtgggagcaa
      541 gttatttaca gaactattat ttagaaagac aacatgaaaa atacagatgt tgtttacatt
      601 gaaagactgt tttcttagca aaa
//
LOCUS       KCOD01003279             585 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 364679pyr ultra-conserved element
            locus uce-4234, sequence.
ACCESSION   KCOD01003279
VERSION     KCOD01003279.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 585)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 585)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..585
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="364679pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>585
                     /note="ultra-conserved element locus uce-4234"
BASE COUNT          207 a           90 c          105 g          183 t
ORIGIN      
        1 tttgttacag ttttattgta gtgaaatatg ttcattttag cagtggaaaa ctgccctaaa
       61 tagacagcat aagagcaata agatgtcaca ttgcagagca caatttaaaa atgatgtgct
      121 ctagaagtaa ggcttttaga cattttggtt tatgtattaa aagttcccac aaatttgatt
      181 gagaatgagc ctttgattga tatttgctgc agttatgctg cattagactc gatttatcca
      241 ccacctctca ttgttgctat tgattgattt ttaaattaga tgaaggcaat cagtaaatac
      301 cacccaatca agtcctaaaa acatacagga gattagacaa tttagggtaa tcaatgaaaa
      361 tattctgtga tttgctacca ctcaattttg accataaatt acgaccataa cttgcaagtt
      421 agtaagccat aaaacaagtg gatgtgacaa gaaaaactat aagaaatgaa ttaaggagat
      481 gaagaggaac cactagtgtt atcatttaat gagacaaaat tactctttat acatatctgg
      541 catttctagt tgagtcttgc caacagtatt ggagtacaag agcgc
//
LOCUS       KCOD01003280             435 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 364786pyr ultra-conserved element
            locus uce-3141, sequence.
ACCESSION   KCOD01003280
VERSION     KCOD01003280.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 435)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 435)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..435
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="364786pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>435
                     /note="ultra-conserved element locus uce-3141"
BASE COUNT          124 a           83 c           74 g          154 t
ORIGIN      
        1 tttttgctaa atgttgactc cagtgaacag ctctctaaga tctggcatat tgatttcttg
       61 ttgtgaagtg agctgttcaa gctccattta agattttcat cttgcatgta gccctgagca
      121 catcacagca ccataaatta gttaaattgc acatttatca caaatgttat tttaagatac
      181 tgcgtaaatg tgatggctgg aagatataca gtatgctgca acaagccact acttgggtgg
      241 ggttagacca gggtcacctt tatacacctg tgatttaaag ctcttctcac ccaatttcat
      301 ttttaacctg tttcttgagg cattttgttt tctcttgcac ttgatctgca tatttccaaa
      361 taaaatatca aatgcaaagc aaaagtcaga agtcagatgc ttattttaaa atgctgcatt
      421 tataccttca tgttt
//
LOCUS       KCOD01003281             489 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 364896pyr ultra-conserved element
            locus uce-4983, sequence.
ACCESSION   KCOD01003281
VERSION     KCOD01003281.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 489)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 489)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..489
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="364896pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>489
                     /note="ultra-conserved element locus uce-4983"
BASE COUNT          154 a           75 c           94 g          166 t
ORIGIN      
        1 aattagctaa ggtgagattc tttctggact attaactttt tttagtattt agatcacaac
       61 tcctaaagac ttagctatat tttgacaggt actgacaaag agtgccatgg aattgtgact
      121 caattgtcac cttcgtcgtt ttcaagctga aaaactcagg atgagtgcta ggtactaatt
      181 agaactgtta tattaggaaa gcaaatacaa tggtgtctaa cattaaacaa agcacagttc
      241 tcatcacaaa tggtttcttt tgtgtgaggg ttagtctaaa aacccatttt gcatgctaat
      301 gagacacaaa caataattgc caaagtaact agtttcatgc aattacaaaa accgcataaa
      361 aagctctatt gtttgttgtc ttatgatttc ttaatgctaa ttttgcactt gataatttgg
      421 ggatttcatt tgtaccgcaa tgtgcaattt gaggtttgtg tgtgtgaagg tgaagacttc
      481 taatgggga
//
LOCUS       KCOD01003282             752 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 365003pyr ultra-conserved element
            locus uce-3406, sequence.
ACCESSION   KCOD01003282
VERSION     KCOD01003282.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 752)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 752)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..752
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="365003pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>752
                     /note="ultra-conserved element locus uce-3406"
BASE COUNT          221 a          142 c          146 g          243 t
ORIGIN      
        1 aggagtatag ccagattaca gctggctgga ttgaaatctg tcctttggat ccaggagttc
       61 agaaggtttc acgtgtcact ggcaatgaat gatgtgcaat gaacaaagac atcaacgtac
      121 atgcacatgg gcgtgtgtgc gtgtgtatat gctagtgtat atataaagaa gtgaacattt
      181 ttaaaagcta tatatgtata tgtgtagcgt cttatacata taaatatatg gtccatcatt
      241 ctaattccat gcacaactgc actataacca ttgtggttta taagatcaca cttcatatat
      301 gcatgactca ctggcttcat tcatgtttcc atatgtatgt agaaacatag caaagcagac
      361 attcctagag acattgcagg acaacctcat tgagatggac attctcacct cctcccgaca
      421 tgacggtgct tacaatgatg ggtatgtgac acttacgtgg tcttcctgtt tactgtacag
      481 tcattatgat ccttgcatga aagcatttgg tcatatcagt gatgtttaag ggcagcaaca
      541 ttgctgacct cttccagtgg cttttggagc attgtgtcct gtacatacta atggcaaact
      601 cattaatatg ctagtgagcc actgcatgca atttgttttt atccccttgt tgttttgaaa
      661 gtcatttcat acgtaagaag tacctacagc aattttgagt cctgtattaa ctaaaatcaa
      721 tttaattttc gtaaaaatct gaaaccatag tt
//
LOCUS       KCOD01003283             719 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 365112pyr ultra-conserved element
            locus uce-5602, sequence.
ACCESSION   KCOD01003283
VERSION     KCOD01003283.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 719)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 719)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..719
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="365112pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>719
                     /note="ultra-conserved element locus uce-5602"
BASE COUNT          215 a          142 c          138 g          224 t
ORIGIN      
        1 aatttgtaga ttttcatgtc ctgatcaaaa ttcaaccctt acgtctcaga ggaaacaaaa
       61 ttttgttagt ggcttcaaat aagaaattcc ttaaaagcag aagtggggct agatttgatt
      121 gggtttctac tatccaaact ttccttcagt cttttttgta cgttgtcacc ataaattgtt
      181 tccatctaca cctgatggag aagaccttgt tcctgattgc tctgtatctc cacccctctg
      241 aatttttttt caataggtgc actaggcctt ccaatgaggg gaatgagcaa caatacccct
      301 cagttaaatc gcagcttatc acaaggcact cagttaccga gccacgtaac gccaacaaca
      361 ggggtaccaa caatgtcact tcacacgcct ccatctccga gcaggtattt atcgatagcc
      421 gatatttctg cgtgtttttc tgcagagctc ttgttaaatg ttctgcatat tttgtctgca
      481 gtctgataaa aaagaagaaa agtagtttct atggaccgct gcctgtgtta gggaaataat
      541 accgtgaaaa agtaaggtat gtaaaggaca aattgctggc aaattctgct tcagaatgta
      601 agaggttgtt gtacagttaa aaggtgtcat acaccgtaag aatactaaga tagtaggtct
      661 gaagtgctca ttagaaaaga gctcttttca tatgtataat acttaagtat ttctctaaa
//
LOCUS       KCOD01003284             756 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 365220pyr ultra-conserved element
            locus uce-5620, sequence.
ACCESSION   KCOD01003284
VERSION     KCOD01003284.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 756)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 756)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..756
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="365220pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>756
                     /note="ultra-conserved element locus uce-5620"
BASE COUNT          197 a          183 c          222 g          154 t
ORIGIN      
        1 gtgtcccctc tggctgctgg atgagtgctc aggaaattgc catgatttta ttcctctaaa
       61 tacagaaatc gtcactttag ggctcagatt tattagactt tcatacaggg ccaagcacca
      121 ttaaaccgat tcctgtccac ccaacccagc cacccccaca gatagtccaa gcccctcagt
      181 cttacttgaa agggaaaaag aaagggccag tgagatgatc agggtggagg agggggggta
      241 agatttacaa gtgaatggag gtaagaatgg agcagtttgt gggataaagg ggctgcggag
      301 ggagctttac agatgtgcag agggacggcg gctcattgtt taattaagca gaaagtggct
      361 cttttgaaaa gcaattttgc acaggagctc tgagctcagc aaacaactcc tgcgagtgag
      421 ggcaggagga gaaaggaaca gctggcccgg agccgtgtga accgcatgct aagcggttta
      481 aagggcccgg atcctcctcc ccagccctgc tccgctgcca ccctctgaac agcgctgtca
      541 gcacagcaaa tcccaccaag agaaaagagg gagcggagtg ggacagaggg tgtcctgcta
      601 ggtatccgca ctgcaataca gcggctggga aggaccaggc tttgttatcc cagggatttg
      661 gtcacacaca agagctggtt tcccagtgcc tgggttccac aatgagctgg gatgagctga
      721 tccggtaacg ctgctccacg gcctcccagg agggtg
//
LOCUS       KCOD01003285             644 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 365332pyr ultra-conserved element
            locus uce-2156, sequence.
ACCESSION   KCOD01003285
VERSION     KCOD01003285.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 644)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 644)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="365332pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>644
                     /note="ultra-conserved element locus uce-2156"
BASE COUNT          213 a          128 c          112 g          191 t
ORIGIN      
        1 aagcaagaat ttctaccctt atatttcaaa aaacacatca acttgtcctt atcccagaat
       61 ggcaaccgtg attccatttt tgaaaaacag gcctcatccc attgaatgct accaaacatg
      121 taccttatcc tttagctcaa atacattttg catgacctta catgaattgc ttagataaaa
      181 gccattctac ttttgttatt ttaaagtgca gatgcatttg agtcattttc cccttttgtt
      241 tcatatcctt aagatccaca gcttcaaaga caaaatgtca gcatgcagtc gatttatgac
      301 tgaattcttg aagagacact gaagaattac cttgtcaatc accccaagga ctctgaaggt
      361 cttcagttcc tcggcagggc tccttaggtt ccaagagggc cttgaactta gtgatcctgg
      421 aggctaatgg aagatatcaa agattataca tcaatcaggg tggtacttga aggaagactg
      481 cctgctgaag caaatgccag gccgaaggaa actaaattta tcataaatca gagagactga
      541 agatgaaagg agaagttttc tgtttgtcct tcaacttgca agtaaataaa agtcgacata
      601 acactgaaaa caaaatttaa aaatgcaatg aatttttgta tttt
//
LOCUS       KCOD01003286             714 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 365443pyr ultra-conserved element
            locus uce-1252, sequence.
ACCESSION   KCOD01003286
VERSION     KCOD01003286.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 714)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 714)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..714
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="365443pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>714
                     /note="ultra-conserved element locus uce-1252"
BASE COUNT          214 a          117 c          152 g          231 t
ORIGIN      
        1 ttttaattac tggtgaatac atgaactcct ttgccacagg cttagtgttc cttttcactc
       61 catcagccag catctaaaaa tgattttaca tggaatgctg gggagatgaa gtggtgaagt
      121 tacctgtgtg tactttgcca ctatcttgtg agttttgtct gtgaaagttt gatgtagagg
      181 ggctctgaat gattcagtaa acttcttggc aagttagtat gatttgtatg tgaattttcc
      241 aattgtattt cagaccttaa gaaagaaagg ccttaatggt tgtgagagcc ctgatgctga
      301 cgattacttt gagcacagtc cgctatcgga ggacagattc agcaaactaa atgaagatag
      361 tgattttatt ttcaagcgag gccctgtaag tacttttatt ttatctctac tttttatttg
      421 ttgatccttt ttattaactt cattatttag gctctgaaca agaaggaaca cagagggtgc
      481 gacagcccgg accctgacac ttcatatgtg ctcacgccac atacagaaga aaaatataaa
      541 aaaattaatg aagagtttga taatatgatg cggaatcata aaatcgcagt gagtactaaa
      601 gtatggtttg tgcttctctt acatgcatga gaattttcat ggtgtttgct taccactgaa
      661 aaccacttca cagagatgta atggcttgag aagggaaaaa aaaatgagat tctg
//
LOCUS       KCOD01003287             543 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 365656pyr ultra-conserved element
            locus uce-2648, sequence.
ACCESSION   KCOD01003287
VERSION     KCOD01003287.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 543)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 543)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..543
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="365656pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>543
                     /note="ultra-conserved element locus uce-2648"
BASE COUNT          177 a          103 c          143 g          120 t
ORIGIN      
        1 gaggtattgt ttagaacacc ttattagcac caactgagag gccacttttg gctgggctag
       61 agcggtacga ggtttctaat atccttcaag acatccatta ttttaccaca gagacacaag
      121 gccaagcttt ttgtgcattt ttatgaggga gaggtgtgga cgtccaatca gacggaaagg
      181 cgcacgtgct cgtgaaatga attacaccga cgtctgttat aaatctttaa cacagctcag
      241 gagatcaatt aagatgttca agcagctaca aaaaggatga ttgaagcaaa tggtaacatc
      301 aggatgacca tatggtaagg gaacgctaga actgcgtgga cgtaaaacgc gagccatcag
      361 agtgccaccg ctaacgaaac agcgagcggg aaacgaggca agatagagga ggagggaaga
      421 acagtatggg atgcacatgc agtgatatca gagctaagtg ccttccaaca agtcataggt
      481 tcaaggtgtc ggcacgatgc agagttgaca attccaaaag tcatggctga gtgtttaaaa
      541 taa
//
LOCUS       KCOD01003288             864 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 365764pyr ultra-conserved element
            locus uce-7688, sequence.
ACCESSION   KCOD01003288
VERSION     KCOD01003288.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 864)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 864)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..864
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="365764pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>864
                     /note="ultra-conserved element locus uce-7688"
BASE COUNT          275 a          154 c          159 g          276 t
ORIGIN      
        1 cccattcctt cttgcaacag tgagcaacag tgtactttcc agcaaccgcc aaacactatg
       61 aaaatggttt catttacttc cagaatttgc caaaaacaga tgatgactga aactggtaat
      121 gactattttc tattctctat ccctaagtaa ttgaccatta attataatat caataggctg
      181 tggataagta aagcagacac atgttagggc tacatttcat ttgtaactgt tttgtatata
      241 tcataaatct ctaatattgg gctattgtca cacatgatga attattgtaa gcatgtcagc
      301 acatagtgga agtcaagtac attcaaatac tactcagtca gaattgaatt tggcatgata
      361 gtctcataaa aggggactca attgagagtt tccacttgcc tgctctaaac ttgtcacttg
      421 taggtgctaa agagcttgtt gtgttggttt aattagtcaa caaatcggtc cttacttgat
      481 tgcgtggtcg tatcacatat gttaacactt cactgtttga tggagatatt aacaagtgac
      541 aagagtctct tggtctatgg actttaaaga agagaagctc ttctatatta tttcatttgg
      601 tcctgccaat atttattaga tcatgcaggc tgcaggctgc caacaagaga aagacaacac
      661 aaacattttt cagggttatg ctcatctgta tcccaaagaa gggtcactaa acaattgatg
      721 gtagaagaat ataagtaaga tgagtgtttt ctaccacagc ttagaaaccc attatatgat
      781 acagtttgct gcagacctcc ttggagcttt tttcacttaa agataattta tgacaagaac
      841 agagaggttc ttgaaaatgc tata
//
LOCUS       KCOD01003289             621 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 365875pyr ultra-conserved element
            locus uce-2206, sequence.
ACCESSION   KCOD01003289
VERSION     KCOD01003289.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 621)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 621)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..621
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="365875pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>621
                     /note="ultra-conserved element locus uce-2206"
BASE COUNT          204 a          130 c          106 g          181 t
ORIGIN      
        1 attccagcgg gaaacacaaa gcaggttcca gtaattagat ccacttacta taaatgaagt
       61 tacatcctgc ttaaaaagaa gttggtcagt ttccatttat gcttttaccc attccctagc
      121 atggatgttt cattgatggc tgagggtaac acttcaaaaa tgaactagct aaacaaactt
      181 cccagcagca cttgacagag ctacacctat tcttccccat ttccaaagca gtacagaatt
      241 aattaccagt tctatggatc tattgtaagt ataatagact aaagagctat cacagacaca
      301 tttattgtaa aagcacaatc ccaagagtgt ctagtagagg gccaaaacga ttaacacaaa
      361 tgctttgtca gatcaaagat aaaacctgca ccgcccaatt gaggaatgaa ttagaacagt
      421 gggttatctt tcaaattaac cagggcagtt agtgaggaaa atttcatgaa agtgtaattc
      481 ttagcctttg tgaatccaca cagcaggcat tctgccagct gacaagatga tgaaattttc
      541 atgcttaaaa aagccctctt catttcccaa tttagattag ctagcgtttc tctctctttt
      601 catctatttg ctcttctgaa g
//
LOCUS       KCOD01003290             708 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 365984pyr ultra-conserved element
            locus uce-5966, sequence.
ACCESSION   KCOD01003290
VERSION     KCOD01003290.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 708)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 708)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..708
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="365984pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>708
                     /note="ultra-conserved element locus uce-5966"
BASE COUNT          195 a          139 c          173 g          201 t
ORIGIN      
        1 ctctgaactt ttggagtttt aaaggttatt cccgtcgcta gcggtacaga gcactcacca
       61 tgactggcaa ctttagggag catgcagttt ttactctatt gactcttggc taccgttttg
      121 ttcattctgt attcttgaca gcaaattgat ttaacttgca gcaggagtgt gcaagtgagc
      181 ccacaggaga aaatgtgtga atgtgaaatg tagcagggag caaggcgagg atactgaatg
      241 gcaacattta ggcattgact gtgacattgt attaaccttt ttaatggatg tatgtaataa
      301 agtgacatgt aaatggagca caaggggaga tatgacacta tatctggaaa aggataaaac
      361 agtcagtgaa tactgggcta ttatagcagt ttgcaaacct tggataaact cagtcagcgg
      421 ttgtataatt ggttattcaa tcccgaccct tgttcacagc tcaaagccag gaacactgag
      481 acctgttgcc aatttgagtg aatgcagtga ctgtactcgg ccggagccta gcactggagc
      541 caggcctttt cctgtgggct ggtttccacc atgtctggga ctggcgcagt gacagtagcc
      601 cttttgttgt gagaggctgg ctggtactcc cctcctttgc aaaatgtcta acagctacac
      661 aaatataaga aaataggaaa agggacttac tgtagctttt ctcttacc
//
LOCUS       KCOD01003291             647 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 366088pyr ultra-conserved element
            locus uce-4024, sequence.
ACCESSION   KCOD01003291
VERSION     KCOD01003291.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 647)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 647)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..647
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="366088pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>647
                     /note="ultra-conserved element locus uce-4024"
BASE COUNT          150 a          148 c          128 g          221 t
ORIGIN      
        1 gacagagcaa gaaccttcac acgtgtgagc ttccagacac gcagcctgcg ccctccattg
       61 gctaaccacg aattcagcct tgttggaaac acaagcttga agaaggttct tcttgttgtt
      121 ctttacatac tttgttttgt ggtcctcgtt actgacggct gcttttgttt gttccctttt
      181 tcctttgtcc atttgacttt cccagtgtgt gtgttgctac cagtttctat tgctccaccc
      241 cctcccccta tgcctcagtt gactccacag atacctctca caggcttcgt ggccagggtg
      301 caggaaaaca gtaagtttgg acaagctgag ctgttaaagg gtagagccta ctctcttcta
      361 gcatgcatgg ctggcaagtc agactctatt ttgtttcctt ttccagaagc taataccatc
      421 ttgcattcta gtgtcaatat gctattggag ctgaagggca cactcttcaa ttttttataa
      481 cacgtgcatg attattactg acccattcaa gttctctgca aatttattac agaagtgtgg
      541 catatgtttg gtgtgagtat aaaattccat tttaattgaa aacgatttca tgttgaatca
      601 ccctgccttt ttctctaggg ataattgatt agtttttatt agaaagg
//
LOCUS       KCOD01003292             600 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 366195pyr ultra-conserved element
            locus uce-2000, sequence.
ACCESSION   KCOD01003292
VERSION     KCOD01003292.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 600)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 600)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..600
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="366195pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>600
                     /note="ultra-conserved element locus uce-2000"
BASE COUNT          179 a          109 c          147 g          165 t
ORIGIN      
        1 taaataacac agtgaagttg agaaggagcc aagggaggtg gcggcgagga gaaactctag
       61 aaaagcaaaa ctggatttct tctggaaagt gcagaattct ttagttcttt ggttccagag
      121 agagcgtgaa gatgcttgtg ccaggcggca ccggagtttg ccaattgatc cttcttattc
      181 tgtgtgtaca tgcgaagttt ggatcatgtt acatgaatag tgccagctgg gggttctttg
      241 ccagcaccat gccaagtgaa ataatatatt tactctctct atattttaca ccagtgtgtg
      301 cctgcagcag cctccacagc cactataggt tttttttgtt tggggtgagg agcagggata
      361 aggagagcag gtttcaagtt cctatttgca gaacagtttg tttagctagg ggaaaaacaa
      421 gtccaaagag cctatgggct tttcctgttt ctaaactctc agtactaaac cagaaatata
      481 aattatcaaa tcccagtgcc cagaagggac aagtctatca aataagcagt atttactatt
      541 gtttagacag gagatgtaca aaaggaaagg agatggactt ttcactgagt aaccagcaca
//
LOCUS       KCOD01003293             776 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 366303pyr ultra-conserved element
            locus uce-16, sequence.
ACCESSION   KCOD01003293
VERSION     KCOD01003293.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 776)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 776)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..776
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="366303pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>776
                     /note="ultra-conserved element locus uce-16"
BASE COUNT          246 a          156 c          153 g          221 t
ORIGIN      
        1 ttcagtcatg tctgcaattg attcagaaaa agacaatatt ttatccgtcc tctttggagt
       61 tcaagtatga atggtgaagc aaaagagagt gaaactgagg gaaacatgaa aagcttgatt
      121 tgttaggacc cctgctgtct gaaaagagat caaagctcag gaggaggctg taaaacagcc
      181 gaatgcactg cacagaaaca tggcctgtgg cagctgctct gggcacgctc tcacaacaca
      241 ggtgtgcctc caagtctgct ctgccagctg aatcatggga ccaggctacc tcttctcctt
      301 cttcattatt tcaactgcag tcactgagga gatgtgagct ccatccatca caatgcacaa
      361 attcacagtg cgcagattca gcacaggcct aattaaagct tttcctttca tttgtggaga
      421 taattagact ttcatctcac caggaagctt cagaaagatc tatttctttc ttcaataaga
      481 gctacatcaa acaaaagcag attttaatcg ccttttcttt ggggcatgag tcaataatga
      541 aagatgtcat gggtaacaaa aattgtgtgc agggggaaaa aagaccaagc tatgatcttt
      601 aattaacacc atgtttgcaa acaccattaa tttctctcat taaaattatt tttatctaca
      661 actgattgtt gataaaacaa tcgatttgaa gatctcatct gtttcatgct atgcaggaac
      721 ccattgtaca ctgttaagca acatgtgaga ataataaaaa atgcatatgt gtgtgt
//
LOCUS       KCOD01003294             673 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 366416pyr ultra-conserved element
            locus uce-556, sequence.
ACCESSION   KCOD01003294
VERSION     KCOD01003294.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 673)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 673)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..673
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="366416pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>673
                     /note="ultra-conserved element locus uce-556"
BASE COUNT          234 a          125 c          116 g          198 t
ORIGIN      
        1 gtagcaataa cgatgcggca gagccattaa catattggca gaccctagga tggattatcg
       61 acattgatta tttcatggac cactgatatc catttgttaa gagaagctca aagatggcct
      121 ctctctgact gaaatctttt acgagcagac agcattttaa gtattaggaa cctgggattt
      181 gggcaacctc tgccctagac tctaacaaaa aattaaagtt cattcttcac tatggtctta
      241 atttctcaac tcatcataac catgtcttct ttaaaaatta atgattgcca gcatttagcc
      301 accggttgtt gctatgaaga tctatgcaaa aagcaaggat ccctatagag agcatgatat
      361 atggaattct ctttattact acaataaaac ttactgacat ttcaatactt ctgcaaatag
      421 cattatagta tcaatcttct gaattaggtt gaaaattaag ttgtaaatta aaagaaagtg
      481 tactttggaa tacaacatga tatgtcacct agaaaaagac ctttgtgcat aacagagctg
      541 agcagaaaaa ctgaaagata agcccaggtg cctctaaagt gcctatttca tcataaagga
      601 tctaggttat attttacaag aagaacacag tctgaaagcc catatatttc acctcaggag
      661 aacagattct gaa
//
LOCUS       KCOD01003295             582 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 366526pyr ultra-conserved element
            locus uce-4840, sequence.
ACCESSION   KCOD01003295
VERSION     KCOD01003295.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 582)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="366526pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>582
                     /note="ultra-conserved element locus uce-4840"
BASE COUNT          149 a          162 c          137 g          134 t
ORIGIN      
        1 tcagaagttc ctgaaaccaa ggcagtgctg agggggcttt tcagtgcatc caaagtgata
       61 atcaaatcaa attttttccc cctccactga tagttctgtt ttgacttggt gcttagattc
      121 cacatctggt cactgtgaaa tcccaaggaa gctccttgtc tgggtctcag tcactgcatg
      181 aacagcctgc aaagggactg gctgggtttc aggaggctct gacggtgacc tctcaccgca
      241 ctgagatgcc aaggcagaac tcggacccca cctcagaaaa ccctcctctg ccccctcgca
      301 ttgaaaagtt tgaccgaagt tcttggttac ggcaggagga agacattcca ccaaaggtaa
      361 cacaatcgct cctcactttc agcacctggc aaagcagagt gggcaggact gaggttctgc
      421 agcgggtgct gacctgcccc atttcctgag gcagtttgca ggacgtgctg ggagctgctc
      481 ttgcctgcag aaaaacagca ctgccctcca gcaaagaaag ttctcgagcc cggacagagg
      541 ccaaaacaaa ttaatctctt ctttccctaa aaaacaacct tc
//
LOCUS       KCOD01003296             505 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 366634pyr ultra-conserved element
            locus uce-1555, sequence.
ACCESSION   KCOD01003296
VERSION     KCOD01003296.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 505)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 505)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="366634pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>505
                     /note="ultra-conserved element locus uce-1555"
BASE COUNT          152 a           88 c           87 g          178 t
ORIGIN      
        1 ttttcctaac aagcaagatg ctaattcttt aaatggttgg acatttacta ttttctggcc
       61 attgactacc ccaggcaatc atatttgatg ctccttaatt agagtaccct tttttatttc
      121 caggttcttt tccacctcag caatcgagac aatacatttg cttaccacgc tgctctccta
      181 agtgttcttt tgcatgtaaa ttaatcttga ttcagtttac actgtcatgc tgagtggtac
      241 aaattgccta taacaataaa acagcatgag ttaaaaataa aggggggtga aaaagcagat
      301 tgaatgtgtg ccttacttga taggatgtta ctttgcttta tgccaataca ttagtcgacg
      361 ataatgaatc ttctgttctg aaaagcatgg tttagttgat ttttttaatt ttacttcaat
      421 ggagcagtac cttgtctttt atagaacaag ttagacaaac cattaatgac aagagtgtta
      481 aggttaaata tgaagcaatg cattc
//
LOCUS       KCOD01003297             599 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 366740pyr ultra-conserved element
            locus uce-6517, sequence.
ACCESSION   KCOD01003297
VERSION     KCOD01003297.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 599)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 599)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..599
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="366740pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>599
                     /note="ultra-conserved element locus uce-6517"
BASE COUNT          183 a          120 c          127 g          169 t
ORIGIN      
        1 gaaagtttta catttagtca gtgacaagtt atccacatat gatagtgata taacaaggtt
       61 ctctgctgct cattgcccag aggaaacatt tctggtgtat aaacaagctg atacttcaat
      121 gttaatgtat attacggaaa aaatgccgtt gtccttcatg tggtgtcccc agcagcaaaa
      181 caactgccag tgaagcttct aacaccacat atgcccagct cgtgctactt tctgttagat
      241 tcagctattg atgcagcagg tcacaatgca atttagaagc aattaaaagg taatgaatgt
      301 gctgaactga aaccactgcc tggaaggctt tttctgtgta caagggagat ttgtgtcctt
      361 cagtgatttc tgttagtgaa acggcaaaga aaaatgcttc tgaaatgggc ctcagatgtc
      421 tgaaggacag tctgaaatgt gagcactgct gaagtgctgt gatacaccag cttaagctcc
      481 tacacacaaa atcagagaaa cttcttaact atctgagaat tctctctcta taacaaggct
      541 ttggggaaaa agactcttgg gatatcatgc agtttccaca tactgctgca aagctgcgg
//
LOCUS       KCOD01003298             507 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 366854pyr ultra-conserved element
            locus uce-5589, sequence.
ACCESSION   KCOD01003298
VERSION     KCOD01003298.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 507)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 507)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..507
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="366854pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>507
                     /note="ultra-conserved element locus uce-5589"
BASE COUNT          181 a           98 c           80 g          148 t
ORIGIN      
        1 aaaataaaga aaaggaagcc acataagaaa gaaaaacaga atgacagtga tgttttagtt
       61 tacactagat atggcaacac atacaaactg tcaaaactat ggagtgaaaa aagctgttat
      121 caagcaactg tcaagagagt cctctgagat ttggaaatct tgtgtttatt gtaactactg
      181 cacattacac aaagaaagaa acatccctct tcttaccatt gctgctaaat atcatgcaag
      241 agaacccaga cttcttcctc actacttaga ttaatttttt ttcccgtgca attctgtgct
      301 tgacagcaca gggcccctcc tttttcaggt attgtttggt caaagttcag agagaaactt
      361 gaggttatat caaacattat ttcattttca agaactgtca acacccattt tatgttgtta
      421 acttgttgtc catcattttt gacaccaaaa tacacactta aaacacgtac atagaaagag
      481 caaagataat ggaaacagct attctac
//
LOCUS       KCOD01003299             782 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 366965pyr ultra-conserved element
            locus uce-2102, sequence.
ACCESSION   KCOD01003299
VERSION     KCOD01003299.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 782)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 782)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..782
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="366965pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>782
                     /note="ultra-conserved element locus uce-2102"
BASE COUNT          271 a          136 c          120 g          255 t
ORIGIN      
        1 ggtttggcaa accagactct ttcagcaaca tctatagtaa aagttactag ttatttgaca
       61 gaactaatac ttatgcaagg catagtagta gaaactgtct tcatttctaa gatttcacac
      121 attccctaat taattcaagg ggacttacag ttttagataa cattcttcct tttatcacct
      181 gccatctagc agttggtata atgtcaacac ttacattttt tttccaactg aaatcatttt
      241 taaaacattt ttatcctaaa atgttctcct cgatttttca aaaattatct taaagataag
      301 agatttcttt ccatttcagt cccacaacaa cgagaatgtc agcacagctt ttttgacaga
      361 caaattattg aatcaaagaa agaatatgcc attaagccca caggttagga agtgtcagga
      421 atggtttaaa gagatatccc atttatcttc aaaacatgca cggaatgtca ctaatgtgtg
      481 tttatcatgt ataatcagac aaagaaaata tcgaaataaa gtactcctgc atacaataga
      541 agtctccttc catctctcaa gatatcagtg ctattcaaat agaataataa tgatgaaacc
      601 tcctttcttg aaaatggaaa tcaagtgaaa tgtagataga aatgattttt ttgtagttga
      661 tgtacgtttc taaagtgcat taacaggaaa tccagaactt tttaggtcaa ttatattgtc
      721 agtattgtca atgccactga aatgaatacc taagcagtgc atatgcttgc tggaacaggg
      781 at
//
LOCUS       KCOD01003300             601 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 367069pyr ultra-conserved element
            locus uce-3622, sequence.
ACCESSION   KCOD01003300
VERSION     KCOD01003300.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 601)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="367069pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>601
                     /note="ultra-conserved element locus uce-3622"
BASE COUNT          157 a          121 c          123 g          200 t
ORIGIN      
        1 aagtgacctg gattcacttt taaaaatacg atttgcaaac ttgttgacta ggattcttca
       61 tttggaggat gacttgattt gtccacataa atcccctttg tcaaatttcc ccttgctttc
      121 cattttacag tccttaaacc aaacaaattc taaactgaac tttttgcaag ccgccagctt
      181 tcccaagtgt ctcatcctct cccctctgtc atcctgaggc aatgtgcctg catttgtgtg
      241 tagatttata gtttatcttt atctatggct tcatctgtag gtagctatta tagccacctt
      301 gcctggatat tgtttgggcc tgatagatct gtctgtagtt catcaaaggg gagctgagtg
      361 gctaaaagcc attgggtcca gctgaggatg aaatacgagc catcagcctt ggtaatggct
      421 gtaaaatttc ataattacac ggcctttatt acattgcata atgatcctga agcagtatgg
      481 aacaattaat taagattttc aaccgtggct ctttcagaaa ttggtgctag tggctgagaa
      541 atggggaagt gtcttgtcct aaaagcatta gggatgctta agaagtactt cctgggtact
      601 t
//
LOCUS       KCOD01003301             842 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 367180pyr ultra-conserved element
            locus uce-3150, sequence.
ACCESSION   KCOD01003301
VERSION     KCOD01003301.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 842)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 842)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..842
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="367180pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>842
                     /note="ultra-conserved element locus uce-3150"
BASE COUNT          222 a          182 c          197 g          241 t
ORIGIN      
        1 ttttacaaaa atgctatttc atagtaatca aacagtagca agccaaatgt aatagagtat
       61 ctatattact gtgtatctca tttaattttg tcttgttgaa tggccatatt aaatatggag
      121 ttttcctgct tatatcttcc aaagaactat tgcatgggct gtaaaccaca gataacatgc
      181 gtgtgcaaaa tatccatgtt tgcgtacttg tggacaagct cctgcagtgt tctaaaagtg
      241 taaagaggaa aacctgcctt tagtttccta ctctgctgga tagctacaag tagaaaatgt
      301 taaaagcaag acagtatgtt ttatatttta cttaagggtt atttttgtgg ttttatctga
      361 tccttttagg atccaaacag gggcccttat tctattgtac ctttttggct ttgtttagac
      421 cagtgatact caacctgtgg ctctagagcc ggatgtggct cttcatggcc ctacaggcgg
      481 ctctcgcaat gtaggcatct gatcggcgct ccactctatc aggcagcgcg gggagcactg
      541 agcaaatgga ccagcagtgt gggagtcgct gaagttcccc ctcccatagg gggaaagaaa
      601 aggagctgct gggatccccc cacaggtaag agtagagatc acctcccacc cagcagctgt
      661 ggggcagaat agaaacttgc ccttttgccc cttccacccc tccaccccac tccttcctag
      721 cagccagaag ggattgaaga cagaatgctg ctgggagaga ggatgctgat gtgtcatgtc
      781 gtgatgtatc aatgtgtggt ggcattaagg cagcatcatc acacgttgaa gtgtcatgat
      841 gg
//
LOCUS       KCOD01003302             886 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 367292pyr ultra-conserved element
            locus uce-2028, sequence.
ACCESSION   KCOD01003302
VERSION     KCOD01003302.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 886)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 886)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..886
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="367292pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>886
                     /note="ultra-conserved element locus uce-2028"
BASE COUNT          275 a          167 c          159 g          285 t
ORIGIN      
        1 cattcttggc tgaaactgca cattctcatc tgcctgaaaa tactcagcag tcgttcatga
       61 aaaatgtttt tgaactaatg agctatattt gcattcccct tagaaaggat tcagaatttt
      121 tcatctacac tgcaccatga aaaatggatg tgtttttcac agaggtaatt tgaacataaa
      181 ccaccgcatc aatgggaaga caacctttgc agaaactttt taacttagca cattccattt
      241 gttttcactg gggaaggtca aacttatgtg agagatgtaa atttcatgca caaacctagg
      301 tgctgatgag atttgttttt gtagataatc tgcagcagag aaatttttca taatgtcacc
      361 acaaaataaa ttaaaatgtt catcttcata tggctggttc cattgcatta aaataaatgt
      421 tgcaagctca tttaattagt atagttagga atgtctcttc cctgcttcac tgactctcca
      481 aatcacaagt taatttgtca aaatcagacc attgtttttc cttcattctt cattactgaa
      541 aagacagccc catttaaata aatgtttatg ctacagagag cagagcagtg aacaacccca
      601 aatatttttc taagcacatg ttggaaaagt tgggactgca aagagctgga gcgtgcgtgt
      661 gtgtgtgtgt tgttattgga tatttgactg gctggaaagg tacaaaattg agcagtctgc
      721 tgtaactgat gatgtagggc acaccatctc tcatgccagc ggctacacgc acttggaagc
      781 agttttcttc tatgttttca atgatgacaa aagatacaat ctctataaat taccctaatc
      841 aaatcattct cttcaagaac tcttggttaa tcaattagtc agtgct
//
LOCUS       KCOD01003303             504 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 367399pyr ultra-conserved element
            locus uce-1758, sequence.
ACCESSION   KCOD01003303
VERSION     KCOD01003303.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 504)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 504)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..504
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="367399pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>504
                     /note="ultra-conserved element locus uce-1758"
BASE COUNT          173 a           78 c           85 g          168 t
ORIGIN      
        1 aattgtaagg aaacagactt ggtttaactt ggtctcacag tacaagctgc acattgtctt
       61 taggctttct tagctttaca tacagtcaga taagttttgg ctccttctgt ctaatgctgt
      121 ttcctctaat ggttgaagaa atggaacatt atactaccta acgtgtgggg gtcacattaa
      181 tcacagaaaa ttcttttaat gtctcagaag taactgtcaa actggacata ctgaatctat
      241 ttaaactaaa gcatgccatt ttttatctac agtgatcttt aattcacata aaagggtcaa
      301 gaaaatgtga ttaagtgaca gttttaaaat gtactataat attaaatagc ttgattaagt
      361 gacaactata aaatgtaata caatattaag tatctggcta tgtcccaaaa gaactttaaa
      421 gtattttgaa tggtttggga attctctagc ccatcatgag ttacaaaaga gcatttttat
      481 taaacgtaaa caggtgaact caga
//
LOCUS       KCOD01003304             565 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 367508pyr ultra-conserved element
            locus uce-838, sequence.
ACCESSION   KCOD01003304
VERSION     KCOD01003304.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 565)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 565)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..565
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="367508pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>565
                     /note="ultra-conserved element locus uce-838"
BASE COUNT          154 a          123 c          104 g          184 t
ORIGIN      
        1 actatgtgtc cctgtcacta taatatcaga ggattttata tacctaattt tgaagagatt
       61 cactcattgc attttccctt aacttaccct attcctggca gaaactttca aatctaatca
      121 gtcagcaacc ctagtcaggg cttttcacca tttgttcagc agttcacaag tatgttggct
      181 tcatagagtt tcccactgta ccttccacag cctagctgac aggctctgga cagcaggaca
      241 gctagatcca ataaatctga gacctgtcta ggtgcttcat ttatcaagag gcctaattta
      301 cccaggccct ttagactaat tgcagatttg taaaaaatgc tgataatgta gaacagtgca
      361 ttgtgaatgt cccttgccat atttttgcta atgtgtttca tctggagtac ataaagagac
      421 agggatgctg attttagaca cagcactttg gggctaatcc agttaaatga ttatccctaa
      481 aaatctgcag tgatgtcatt ttccctatag aactctgcca gttgccttgt ttgctttatt
      541 gtgagaaata cgtgatcccg gcttt
//
LOCUS       KCOD01003305             709 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 367617pyr ultra-conserved element
            locus uce-1677, sequence.
ACCESSION   KCOD01003305
VERSION     KCOD01003305.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 709)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 709)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="367617pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>709
                     /note="ultra-conserved element locus uce-1677"
BASE COUNT          220 a          112 c          137 g          240 t
ORIGIN      
        1 ttcaagggtt tcttgaaatg atcaagtcaa gattcatcaa ctttaaatca tgctttggtc
       61 ttgcttttga aagtacctaa tattttctgg ccataccctc tatgttattt aaatgctggt
      121 aatcttgttc atggcaattt caataagcca cagcagacat ataatgcttc ctcttttaat
      181 aggtgcaaag tgagttattg tcacaaagca tatatatgaa aaaaggatgt gaaaagagaa
      241 tcctgcctaa tctctgtaat aagggcttgt gagggtgcta acatggtcac ctgaattatg
      301 catgtctatt gtgttcaaat atcataaatc gatgcatgaa taccctccaa atcattttca
      361 gttcatgaac atttatatac agagctcttg agcactgcaa agacaattag tcatatttgt
      421 atgccggaat taattgagag tgagatgcgg gaggcagaaa gagagaacaa agaatgcttt
      481 ttgtcagttc ttccaactga cagggataat tagatatatg aaattgaaat tcctcagcag
      541 ggggtttctg ttgacaatga attttctttt gattccattc tgttattctt ttatgctgtc
      601 atctgtggca atttgttatt cagcttgaag cttaaaaaag caaagcattc cgcttttatg
      661 agtagatgat gtcagtttgt acactgctgg gaaatagata ttaaatgta
//
LOCUS       KCOD01003306             701 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 367731pyr ultra-conserved element
            locus uce-735, sequence.
ACCESSION   KCOD01003306
VERSION     KCOD01003306.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 701)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 701)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..701
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="367731pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>701
                     /note="ultra-conserved element locus uce-735"
BASE COUNT          260 a          121 c          130 g          190 t
ORIGIN      
        1 ttttaaattt acctaccacc aaattaagca atgctggttt taaagtctta aaggacaact
       61 aaaccaaagc ataattctca ctgtggtaac atttgcaatt cctataaaga aaccaaattt
      121 ttatgaaagc gtgtaaaaca ctcagaaaaa catgcactta aacgttcttg gcaagtaaaa
      181 gtggaaggta ttgcttgaaa tccatacaaa gggattagat gtccttaaag acagttgttg
      241 cttggaatgc ataaaatgtt taatgaagta aagtttaaaa acctgttgcc atgagccaaa
      301 aatactggat gtgaaagcca gtgatttagg ggagacaggg gaagaagtga tttgttcccc
      361 tgatctgcgt cttcgacgcc cagtacccac accactggtg taatgcagcc aggtaccaat
      421 acactctggg ctagacacac tcagggggct ctcttcctgg aagtgagaaa gggggtaaaa
      481 aacagcaaag catgcaaagt tagattcaac agagccaaat gaacagaaaa gaaaaaatcc
      541 caattttgta tattaccaaa actattaaac agtgaagaga gaagatatta taaagtttta
      601 agtttcactt ttcttttcat ccaactacaa cacttcaacc aaatttctgg tagactaaat
      661 atgagagaaa attatttgtt attgattcat aattttaaga a
//
LOCUS       KCOD01003307             525 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 367842pyr ultra-conserved element
            locus uce-6076, sequence.
ACCESSION   KCOD01003307
VERSION     KCOD01003307.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 525)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 525)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..525
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="367842pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>525
                     /note="ultra-conserved element locus uce-6076"
BASE COUNT          175 a           94 c           80 g          176 t
ORIGIN      
        1 tggcaacaga aaattaccaa tatttcccta attccttttc cttaaagtct ctgtggaatt
       61 tgctttactc atttgaattc atagatagtg cttctctaaa gtagcaaaga tttatccaac
      121 tgtgtttaaa tatggagctg aaagccctaa tcgcaattta atttgactaa atacttacat
      181 actttatggt caatcatcca catcttttac aaggttcctt ggctttggaa ttactaatct
      241 caaaatatat gagccttgtc taacatgaca tatattgaaa cagactgtgg aacgatcact
      301 tagagatgag aaccttgcta cagttttagt gaaccaaagc taagaggcaa attattcaat
      361 tatagtaaat ttacagtagc ttaatatttg ataaaagtgg ttcttctatc atcagagcat
      421 catattgaaa acccttgagc agcaaaatag ctctagaaat gccaaggatg ttttagccac
      481 ttactaagaa aattcatctg tcctgatttt tatgaacact ttggc
//
LOCUS       KCOD01003308             766 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 367943pyr ultra-conserved element
            locus uce-6820, sequence.
ACCESSION   KCOD01003308
VERSION     KCOD01003308.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 766)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 766)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..766
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="367943pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>766
                     /note="ultra-conserved element locus uce-6820"
BASE COUNT          205 a          173 c          170 g          218 t
ORIGIN      
        1 tatcattttg gttatgcaaa tgaaacaggt ttagtgaatg aatgacttcc tctcattggt
       61 aaaacacttt gatacctcca acttgccctt atcttgcaga tggattggtt tcagtgggca
      121 ggattacctg aagtcccacc tgacctttcc cattctaaaa aagacacttt acaaaatatc
      181 cccagtgcct caacaaacca aggaggtatc tctggacccc tctgcattcg ctctccagat
      241 cagtcagttc tgccaggcac tgcctggcac tttgagcaac ttttgtttta ccatagttta
      301 aaataagtta tcaatcaatc ataaaatgaa ttttttggtt tctcctggct ccatgaacac
      361 aaagaggtgc acgtcctacc ataggaggaa gcaatggctg ttaagtttta cagttatagt
      421 ggaaagcact gatcacagcc tgctggcctc actactggat gtgacaggcg gtggaggagg
      481 tggcttggca acacatgcag gtggggttga ctgatttagg ggggattaag tcgaggtcct
      541 cgtcgtctgg gatctcatct aaccggtacc catcctttag cagctggatg ttcaagtctt
      601 ggttgatctg ctacagacaa agagacaaac agtcaaacac ttgggacttc ttacttctgg
      661 tgagacgaag aactattctg gaatgtattt ccccatcact aacagctgcc ccacagtcct
      721 agtttttgac ctcaggtgag gggaagtagc ttctttcaga atagaa
//
LOCUS       KCOD01003309             751 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 368036pyr ultra-conserved element
            locus uce-1135, sequence.
ACCESSION   KCOD01003309
VERSION     KCOD01003309.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 751)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 751)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..751
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="368036pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>751
                     /note="ultra-conserved element locus uce-1135"
BASE COUNT          231 a          151 c          141 g          228 t
ORIGIN      
        1 gcccttgctc taacacatcc tttgtggttt aatttaaatg gtgattttta cggtgacatg
       61 tgatgttcat ctgctaacct ttccccaatt ttaaagaagc atcaaatctc ggaagcctct
      121 atctatagac acggtagttt acctacttag gttggtacct aagagcttgt aaacaaattc
      181 ataaatttgt catgatgatt atagtgttgg caaacacaat ggttgatcat gttataaatg
      241 tttatcaaca cccgcactca cccacctgct aagaggtgct acgctttaat gaaattgttt
      301 gaatatcaag gctggttgct aagatacaat gttcttgtta ccagggatgt gatgcttaca
      361 gatttctgtt atcaaataat gattagagat gtgctaacct caaggtgctc ggtgcagtgg
      421 aaggcttact gagccacaaa ttagtaaact gtctgcctga gcagacactt acagaaggag
      481 cacatgtgca tcaaacttac agagctgaca tttttaaaaa agacaagatc tggcagtgta
      541 aatgttccta tagatgatga aagactgtca taggaaatgt ttacatgatc tgttgcctag
      601 cacaatgtct ttgtgccatt ttccctcccg acacagaata gttttgaaat caccaagtca
      661 aataactgcc ttcctctttg ccactcacct cttgaaatta cacattcaca aatgctgatt
      721 tctaagggcc acacaaagat ggaaacaaag a
//
LOCUS       KCOD01003310             782 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 368147pyr ultra-conserved element
            locus uce-146, sequence.
ACCESSION   KCOD01003310
VERSION     KCOD01003310.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 782)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 782)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..782
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="368147pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>782
                     /note="ultra-conserved element locus uce-146"
BASE COUNT          250 a          152 c          163 g          217 t
ORIGIN      
        1 gcaatgggaa ttctttttaa tgaagcttga tttaatccca ttattctaat aaagagtaat
       61 caatcggcag aaaatctgaa ggtctactga ttggagtcgg gctgtcttta aaacagggga
      121 tacaatggag gagaagtgag ttaatcagct tttggtccac taatccccac ttcctgcagc
      181 gagttggagt tttgaaggag ggcaatttgg aagctgtctt agcataaatc tccagcaagt
      241 ccgtggctgt ctggggggaa caagcccctc agcattcacc aagacacgct tcaaggagat
      301 tctactctta atccaattta ctcagccgta taagtcccac tgcttcagct tgccaacaaa
      361 ttaaaatcca gcttcataaa aacaccttga atttggaagg tattggctgg cctgctagac
      421 ttgaaacttc atttattctg gctaacttct caattatctt cccagcagtg gagatgtgta
      481 aaagtgcaaa aatcaatagg attctattcc ctttctattg gaaagggaaa aattaatgag
      541 ataggacact ctcttaatca gaaataaatg ttttaattca gataatgaca tagttttccc
      601 tcgctgaagg atgacaaatg ctgggctgca cccccagcag aagcagtttc aattttattg
      661 taaatataaa aggtattgat cggggagatg cacaaaccct attgcttaca aaagccattc
      721 agggggactg ggaaaactat taagcactgg gtcagaaatc aataaacaac actgaaatgt
      781 ag
//
LOCUS       KCOD01003311             405 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 368256pyr ultra-conserved element
            locus uce-2007, sequence.
ACCESSION   KCOD01003311
VERSION     KCOD01003311.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 405)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 405)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..405
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="368256pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>405
                     /note="ultra-conserved element locus uce-2007"
BASE COUNT          142 a           70 c           72 g          121 t
ORIGIN      
        1 tttctcaatg tatctttgaa agctgtgggg aacggcaaaa caaggtctta aaacttctgg
       61 catggttcaa gaaagggtta agtctaacaa gcagaaaaaa agaaattaac taaagtaagg
      121 cccttgtgat acaatgacac ttgctctatg ctcttacaga gaaaaacacg atgataaaac
      181 accacaaaga ggagtgttat gaattttatt aatgactaga agacagtgtg caaaacatca
      241 aaggtctgtg gaaaagatta atgaccccgt gtgagactgt ttaattacct ccagctaatt
      301 agattcttga ccaaattttt aatatctgca ttccttctaa agcctaattg agattccaca
      361 ttatttatca atctttcaaa aagcccttag tgtgctgctt ttttt
//
LOCUS       KCOD01003312             310 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 368359pyr ultra-conserved element
            locus uce-4440, sequence.
ACCESSION   KCOD01003312
VERSION     KCOD01003312.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 310)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 310)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..310
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="368359pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>310
                     /note="ultra-conserved element locus uce-4440"
BASE COUNT          118 a           42 c           61 g           89 t
ORIGIN      
        1 actgttaagc tgctataact tttagagcat gaaagcaaat gttgtaaaga ggtcactgta
       61 aaggtcacgc agcaggtttg atgtgtcagt ggataaatga tgggatcaca tctggaacag
      121 tttggtgaat aaataaaatg tgaaagctca tatatcactg cccaccttcc aatctgtaag
      181 ggaaagagaa aataaattct ctaataacct tgtaaagcac ataaaagata ttgaataaac
      241 tcttgaaatt ttgtgactaa aactgtctgt attaaataat gattttaaga gtggcaaaaa
      301 gcttgaaata
//
LOCUS       KCOD01003313             779 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 368467pyr ultra-conserved element
            locus uce-5387, sequence.
ACCESSION   KCOD01003313
VERSION     KCOD01003313.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 779)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 779)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..779
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="368467pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>779
                     /note="ultra-conserved element locus uce-5387"
BASE COUNT          249 a          151 c          156 g          223 t
ORIGIN      
        1 aaatagcaaa taaaagcctg ggaaattctg tgctgatcat gtggggcttt tccttaacat
       61 tcattgtaag aatattaatt tactgttgtt tatatgctaa aagaagtgaa caagggagga
      121 gttctattga aatagagcag ctctgaggat tttgagagca gtaagaaaat ataagtatca
      181 aaataattca gaaacagtac aaggcacagt ggcacattat caatttacaa catttaaatt
      241 gataaatgct tgatggtgaa ggcctacaag ggcactttga aaagcaaata gcgacctgct
      301 gaagaaattg atttttcccc cccgaaaatg actgcatgat gcatcatttg actgcatgct
      361 gtccaagtgc ttgacagaga taatctcagc aatcccacgg gtgaccttat cgttctcacc
      421 agggcaactt tgtctaggtt ctgactttgt gcatgtcaag gtttcttcag gcaggatcct
      481 tagggggaaa aagttcctct gttcgatcca gatattgaac cactcttgaa ggcactccca
      541 aaaaggcaag ttttcttcat aattatgaat gaactgaaca ggagaaaata tctatagaca
      601 cagtatcttt gctgaagcca ttattgcctt ctcagtgagc ttagctctta aaggagaaag
      661 gatacctgcc attagaggtt atcagacaca gttgaaagac tccgaaatgt atggcactct
      721 tctacatagc agaaatatcc cacctgcttt ctttctcaca ctcactgttc acagcttta
//
LOCUS       KCOD01003314             502 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 368578pyr ultra-conserved element
            locus uce-3053, sequence.
ACCESSION   KCOD01003314
VERSION     KCOD01003314.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 502)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 502)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..502
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="368578pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>502
                     /note="ultra-conserved element locus uce-3053"
BASE COUNT          143 a          120 c           91 g          148 t
ORIGIN      
        1 cattgcatgt cagccaccag agagaagttt ctcttcaata cccttttcct aaggaagggc
       61 ttgggagaga gcagttgagt ttttttttct tctgtgatgg gattaagcgg gacctgctcc
      121 tttaaaaagt gtccccttcc ccatcatcct ccctccttcc aattacagca ctaatttcag
      181 taatggagca ttaatggagt aatggactgc tgaagctggc ctgaaggaac tgtagtgctc
      241 agcacaaatt gagtaaataa accatatatt agatttctaa acaatacttt tagtctagtc
      301 cccagggaaa gagagttgtc aagacttact taagtcaacc cagcaaaccg tatgcaaaag
      361 atccacccat tcataccctg gaaaatggca ccagtggcct gaagcatcag cgaatctctc
      421 acataaatct ctcctatcct gacaaagagc tctgtgttgt ttccttctcc caatttctct
      481 tctttgattt atttaccaat aa
//
LOCUS       KCOD01003315             520 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 368689pyr ultra-conserved element
            locus uce-7923, sequence.
ACCESSION   KCOD01003315
VERSION     KCOD01003315.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 520)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 520)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..520
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="368689pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>520
                     /note="ultra-conserved element locus uce-7923"
BASE COUNT          175 a          115 c          135 g           95 t
ORIGIN      
        1 aataaccgag gtgacgatga cgtgtttgag actaaatcaa gggatgatga ggctaagcca
       61 tttggtctgg cagtggaaga cagatctcaa gcaacaacac ctgacacaac tccagccaga
      121 actccaacag atgagagtac gccaactagc gagcccaacc ccttcccatt tcatgagggg
      181 aagatgtttg agatgactcg cagtggtgca attgacatga gcaagaggga ttttgttgaa
      241 gaaagactcc aattttttca gattggtgag catacttctg aagggaagtc aggggacaag
      301 ggggaagggg ataaaagtac agtcactgcc atcacacagc cacaggcagg ggacagcact
      361 gtagaaacaa acctagagag accagcaaca gcagttgaaa ataagcccgg caaccaggcc
      421 agtggagatt gcatggaaca aacacttggt agtaactcac tggagaaatc atcggcagca
      481 gtaaacgctt ccaaagttga tcccaaattg cgcacaccaa
//
LOCUS       KCOD01003316             628 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 368791pyr ultra-conserved element
            locus uce-7192, sequence.
ACCESSION   KCOD01003316
VERSION     KCOD01003316.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 628)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 628)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..628
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="368791pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>628
                     /note="ultra-conserved element locus uce-7192"
BASE COUNT          204 a          113 c          122 g          189 t
ORIGIN      
        1 ctttccagca aaagtaacca gatgcttaaa gagaatgtct gaagctatta atgatgaatc
       61 atttgggcat ggcaagagtt cttcaaaaca gtttgttagt gctggccaag caaagtcttt
      121 cagcaggaga tgagacagct atgccaccat gcaaatgaga caggcttgaa atatgatgaa
      181 tcttctatct ccttttccta ctcgactgac actcgctttg aggaaggttg taaatgcaag
      241 agagattgtg gtataattcc tcagactggc gtttctgccc cccagtcact attcgattat
      301 cttccaaatt gctgtgtttc agagagataa agatttttta tggcttgctg acttgaaaca
      361 accagaagag ccagaaaaga gatggctaac cggccatgca tagtaattcc attggtaaat
      421 gacaaaatct ttgtttgtat gacatttcca aaattactac agaagatgaa tctaaaatac
      481 aaaatgtcac atttggcatg caaaactatc acaatatatt tcagtataaa attcatagag
      541 gcgtttaatt tagaatgtgt ttaataacga aggctgcctg catcagtaat cctgccttga
      601 ggtttaaaaa gattgtctta tttattca
//
LOCUS       KCOD01003317             337 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 368901pyr ultra-conserved element
            locus uce-3219, sequence.
ACCESSION   KCOD01003317
VERSION     KCOD01003317.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 337)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 337)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..337
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="368901pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>337
                     /note="ultra-conserved element locus uce-3219"
BASE COUNT           94 a           75 c           60 g          108 t
ORIGIN      
        1 aaagctcctc agttcaacca tgctagctta gaaaacagca gcagcagttt tctctttaat
       61 ggttctatgc ataagcagtt ctgaaaattc cgagactgct cccaccaaat tatccctgat
      121 aattctattt tatgtttttc agaggaacag aacaatggac ctaatacctc aaatctctga
      181 ttgctgactt tctttccttt tttattccag acaattttag gtcttggatc tcctgtggct
      241 tgacagatga atgaggcgac tcctcctgaa acccctgtct ggtcaacggg agttcttgta
      301 aactttggtg gtgctgaaaa aattaatcca agcaata
//
LOCUS       KCOD01003318             707 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 369006pyr ultra-conserved element
            locus uce-1336, sequence.
ACCESSION   KCOD01003318
VERSION     KCOD01003318.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 707)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 707)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="369006pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>707
                     /note="ultra-conserved element locus uce-1336"
BASE COUNT          226 a          150 c          143 g          188 t
ORIGIN      
        1 actttattca tctgcagcaa ttcatcccat tcagaagaca ggatttaaaa atatttaaac
       61 aaggttgagg ataacaacta aaaggtgccc acgagagaca tatttaaatg cctgccaaat
      121 atatttacct aagtcaacag tgaagtttta tttggcaatt ctgcatttta aagctattgt
      181 ctcaattagg ccaaaaagga ggatactgct tatgactgca agtctctgcc tgcattcatt
      241 tattgttcag ttcacagtct ctgaatacaa cacaatcctc caacggagtc agctttcata
      301 attcagcagt acaaagtctg caaacacatg taacctagat ccatatttca cagtgacagc
      361 atatgatagc agaatgtgaa gtattaatgc tagtgtcact acagtcctac actctactgc
      421 actttaagag aaagcagctg ctgagatgaa atgtgtgcca actgtctgaa gacagaaaca
      481 taagaaacat tccttctgtt acaaagggag agacacacac aaacagactt tcttttagac
      541 tcaacaagca caaagtttct tactttcgcc ttttacgttt ctatttcaga accgctcacg
      601 tgctggggag agacgtgcct gggtgggagg ggcatggagc agctcccgag gcagagcagt
      661 gatgcatcag tacagggaac tgctggaatg gtgacaccga tctggca
//
LOCUS       KCOD01003319             506 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 369113pyr ultra-conserved element
            locus uce-3318, sequence.
ACCESSION   KCOD01003319
VERSION     KCOD01003319.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 506)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 506)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..506
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="369113pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>506
                     /note="ultra-conserved element locus uce-3318"
BASE COUNT          149 a          128 c          123 g          106 t
ORIGIN      
        1 ggattagccc cgctaacatg cgagtgccgg cgaaagggaa gaaaaacccc actactgtaa
       61 ccaaaatgca cgcgctgaca ggagaccggg acgggcccgc ggctccccgg gagaaaatgt
      121 agctgtgatg agtgacaggg ctttcaggaa atatgttcac aatcacagac agtgaaggcc
      181 atgacctaga tcgtttaaga gcttgtcttg tcaaattatc aaaagcttct tcgtctctga
      241 ataaagagtg acataagtga gtgtcagaaa gctgcaggct gacaagccaa gcatacaata
      301 acagcatgca cgtcacatac ttgccgaaca ccgccacggc tagcggcaaa tcttaatgag
      361 agcgcggctg gcccaggaga cttgggtccc tgctggcata gctactcatc tcgcaaaaat
      421 ccttcagctc cgagtcagtt atggtctgac acgacgacta caattactaa acacaacttt
      481 ttaacagaat cctctggtgc tttgtc
//
LOCUS       KCOD01003320             278 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 369222pyr ultra-conserved element
            locus uce-4021, sequence.
ACCESSION   KCOD01003320
VERSION     KCOD01003320.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 278)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 278)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..278
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="369222pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>278
                     /note="ultra-conserved element locus uce-4021"
BASE COUNT          101 a           48 c           53 g           76 t
ORIGIN      
        1 tgagcatgct tcattgcaac ctataatgaa atgctcaaat ttacaggcac tgctaagcgt
       61 gtcagtcagg cagcacaatc tttaaaaaat aaccttacag aaagtcaagg tttaaaagga
      121 tttatcaaaa tggaattgct taaaatgaaa tttcagttca ggcacttaaa atatgaagct
      181 acattaaaag gagtcaagaa agggaaagaa ggggttcatt agaaattcat tccctgcaat
      241 gcctttcact cctgcaaggt tgcctttttt caggaaga
//
LOCUS       KCOD01003321             731 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 369330pyr ultra-conserved element
            locus uce-2578, sequence.
ACCESSION   KCOD01003321
VERSION     KCOD01003321.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 731)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 731)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..731
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="369330pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>731
                     /note="ultra-conserved element locus uce-2578"
BASE COUNT          231 a          164 c          134 g          202 t
ORIGIN      
        1 acagtagctc tgaataatac tatttcagtg acagaacaaa gaacattagg aaagtgaaca
       61 cgactacata ttagtttttt ctactgattc ctgttaagct ttgaatctct ggccaaagaa
      121 aggcagactt gcccacattt acacaaataa gctaatgtgc attttgtaaa cattctgaaa
      181 caaaacttcc tgcaagtaac atttatacaa actaagttta agcaaaagcc tttctggaca
      241 cactttctaa aatagccatt atggcatata aagggttagc gctcaaaact aattgggatt
      301 tttttttccc gcagcaaatt tggaaatgaa ctgaagctgc tccctggtgt gaaagctgaa
      361 tccagcagcc acctgcagga tcagcgacca gtgctgccag atgctacaaa gcctttgatt
      421 tccagtagcg atttcagaca cgtttaactc atgtgacatg aactaactgg aacagcatat
      481 tcaatcactt tacaaactct ggcttttctg ctttctatat ttgaaacagc tgcagcagat
      541 agacacattc agactcacag cttgggccct ggttttccta atgacttcca tgatggcatc
      601 catgttgagg tagcttttgc tggtgggagc tgggccaaca cagacagatt catccgccat
      661 tttcacgtga acctgaagag gcaaaattca gcattaacag atgctcccag caaaaataat
      721 taccatcacc c
//
LOCUS       KCOD01003322             468 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 369434pyr ultra-conserved element
            locus uce-6508, sequence.
ACCESSION   KCOD01003322
VERSION     KCOD01003322.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 468)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 468)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..468
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="369434pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>468
                     /note="ultra-conserved element locus uce-6508"
BASE COUNT          169 a           73 c           79 g          147 t
ORIGIN      
        1 aacacagtta atcaagctca gtctgcataa cacagtgcag gtaaactaca gaaaagctta
       61 aatactggca atccctacca aaagtgcaac cttcttttct gaaggtgtta tttgacattg
      121 ctgaaggttt catcttgatt actttcaata aaatccaaag taaggatgac tgtcttggct
      181 cactaagcaa caaggtttta tcactaatta caatccttta ttaccagtag tttaataggt
      241 ttatgatagg tcataaaaca attcagcatg ggagtacata aaaggaatag gttatacagc
      301 tgtgacatct taatatctat tcattgtaat cattttatga tctttaatgg tagcattttt
      361 taaataagtt tgtacgttaa atagatggcc accaaaaatg ggaggtgaag gaaaaccaca
      421 taaatataga gtaaaatact taatgaggca ttttgaaaac ttctaatg
//
LOCUS       KCOD01003323             701 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 369542pyr ultra-conserved element
            locus uce-3320, sequence.
ACCESSION   KCOD01003323
VERSION     KCOD01003323.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 701)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 701)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..701
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="369542pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>701
                     /note="ultra-conserved element locus uce-3320"
BASE COUNT          207 a          140 c          134 g          220 t
ORIGIN      
        1 gagcatttcc atgctgtcat cgtgttacta tcaacagcat tatcagtatc aactgcttct
       61 acaattatgc acaatgcaca attatgctct tcctgcacaa agacttagca accaccaaac
      121 tcgttttctt tttaaataca ctgaaaagga tgtagatttc aatccttcat ctgctcacag
      181 acgaaataac atttccaaat catcactgat agcatttttt tcctcccatt ctaaggatgg
      241 ccaactgttc tcagcgattt ctattacatt tcctacctat tatttcatgt aatggcattc
      301 cttaaatttt aaattagctt tgaagaataa aaataattga attcctgctg ttttgtgtac
      361 atagagggtg acaggagcta atgtgataat ttaaactgta aatgagtctt cactttgtgt
      421 tcattaatta cagctaatta ctgaattaca aaccttcttg gttaggcact gttatgtatt
      481 catgtagcat gttggatttc cagctggtag aaaactgttt tatagactta caagctgaca
      541 caccaagcta gcgccgaaac aattccgtgg gagaaataaa gggagggcgg ggggcacgcg
      601 ctcctgctct gtgaatccag gcagtgagga caaacagggc tgcaaacctg agcctcaggt
      661 gagccaggag tgtgtataat taggatttgc tgtatttggg a
//
LOCUS       KCOD01003324             679 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 369652pyr ultra-conserved element
            locus uce-421, sequence.
ACCESSION   KCOD01003324
VERSION     KCOD01003324.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 679)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 679)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..679
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="369652pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>679
                     /note="ultra-conserved element locus uce-421"
BASE COUNT          208 a          129 c          107 g          235 t
ORIGIN      
        1 ataaatacaa atgcacacag aaagttaacc agaatacatt ttcttatttt tcatggcagc
       61 acaagctctg tctgctaacc cgcagtcact aattcacatt cttttaaaaa aaaaatatgc
      121 ttctgtgctc tagttttaaa acgcaaaggt atgttatttg tcaccatgcc caaaaaagtc
      181 cttactcggt aactttgcca gaagagggag agagagagag gcaaatgctc ccccagctgt
      241 ttcctgtcta caatgtctgt gtaatgtaga taaatgtgag gattttctct aaatccctct
      301 tctgtttgct aaatctcact gtcactgcta aaatcagagc agatagagcc tgcgcaatgg
      361 aataaagtcc tcaatattga aatgtgacat tgctctcaac atctcacatc tctctggatt
      421 tcttttttct catcattact gctaacaaat tcatttccag actttgcact tttaagaagc
      481 aatggaaaaa atcaacagtc tttcaacaca attagttaag tgctgcttgt gtgatttctt
      541 gaaggtaaac ctttattact atttcaaata attttttagt tttattttgc tgtgtattgt
      601 ctgcttctgg cttgaagagt attgtgcact ttttaataac attattttag aactgagaat
      661 tatttataaa ttgctgaac
//
LOCUS       KCOD01003325             374 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 369757pyr ultra-conserved element
            locus uce-5173, sequence.
ACCESSION   KCOD01003325
VERSION     KCOD01003325.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 374)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 374)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..374
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="369757pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>374
                     /note="ultra-conserved element locus uce-5173"
BASE COUNT          139 a           62 c           58 g          115 t
ORIGIN      
        1 tttttaatac atgctttaca ttaaaaattt cttggacagt tgtgctattt ctaatcaggc
       61 cccatggcaa atattcacca accctcacag gaataaacta ttctcacttc aaacaattgt
      121 tacagtttga atccaattga ctctagacaa aagtactgag ataatcagca tattaaagcc
      181 aacactataa ccatatgtta attatgtaaa tgattcattt taatcagcta gaaccatgta
      241 aagagttaca aggaatgcaa atgtagggag ttattaaaaa tctcattatt attcatcttg
      301 gttccatgcg tgaatgtatc catccaaaca gatgaattaa tagttagatg aaagatgaaa
      361 gagctagagg ggaa
//
LOCUS       KCOD01003326             526 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 369867pyr ultra-conserved element
            locus uce-5922, sequence.
ACCESSION   KCOD01003326
VERSION     KCOD01003326.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 526)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 526)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..526
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="369867pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>526
                     /note="ultra-conserved element locus uce-5922"
BASE COUNT          189 a           85 c           75 g          177 t
ORIGIN      
        1 tttggtgcat tggcacattt tatgcaaatt tagtgagaaa atgactcctg tatatgattt
       61 aatatgcatc agcaataact catgatgtcc ttataagaag aaagaaatta aaaatgcatt
      121 agaaaactag aatgctacat ggttaaaact attaaagcat atttcagtgt tttgcttaca
      181 ctagtgttct catcatggtg ccaccatttc atgacaaaga atatagacaa gaaaacattc
      241 aacttaaaat gtctgctggc acacatcacg ggatttgtat gtcaccttga ataccaacta
      301 tttaattagc acttttgcca gccatgctta gaaaatagct catttacatg tatcatgttt
      361 actgattatt gccaaaaatc tactttgcat tgcatttcca tctgttatta cagaaataga
      421 attaaaacat gtaaagtctt atttctcttg tacatatatt ttattaattt aaccttaagt
      481 gtggcataaa aaactggata caactaataa ttaagaactt caaagg
//
LOCUS       KCOD01003327             747 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 370083pyr ultra-conserved element
            locus uce-7559, sequence.
ACCESSION   KCOD01003327
VERSION     KCOD01003327.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 747)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 747)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..747
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="370083pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>747
                     /note="ultra-conserved element locus uce-7559"
BASE COUNT          206 a          173 c          157 g          211 t
ORIGIN      
        1 tataaaactc ccatttgcgt gatgcaagca ggatagtctt tgaatacttc tgtctcgagg
       61 aattctttat tttgccatag aagaaaaatg ttttcatatt ctctcctgcc gtgcagacct
      121 gcagcccggc gagccctttt gcccttgaga gccataacat tatttgttaa catttttatg
      181 atgccaaatg gtctgtgcta gaacgggtgc cattctttag ctgggaaacc atatggcatg
      241 ccgagtaata aataaggtat tgtgatagtt aatgaaccta attgccagca aaggctttaa
      301 tacagggaat gtgctgctga gaatttagca ccacattaga gatgcagcag agctcctctg
      361 acttctgagg cttaatttaa gttctatatt gcaaactcca gaaaataatt ccaaaccctc
      421 ctgctggaaa agcaacctgc tggtagactg tgattatact gaattactaa aatcgcaatc
      481 aattttatac actctgttaa cccttgctgg ggaacttggc tctccaggag ttgaggggat
      541 gccactccaa agaggtatca gagccaagtg agttggagca tcatggtcca tgactggtcc
      601 tctaccctgg catctccctc ttctgagaaa ttccctggcc cacctgccta ccaaccaagc
      661 tgactgtggg caaagcggga agaagagcca caattgtgaa cagtcactgc tatttctctc
      721 tgtgaccaac ctaataactg ctgttcc
//
LOCUS       KCOD01003328             418 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 370187pyr ultra-conserved element
            locus uce-6721, sequence.
ACCESSION   KCOD01003328
VERSION     KCOD01003328.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 418)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 418)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..418
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="370187pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>418
                     /note="ultra-conserved element locus uce-6721"
BASE COUNT          102 a          107 c           89 g          120 t
ORIGIN      
        1 gaaaaagtga cggaaaagcc aggccggccc cacctcgcag ggtctggaat gtgtttgctc
       61 cggtgccggt gttgggtttg taacatgaac cctctgcaaa tacctccggg gcagacaggt
      121 ccctttcggg ctgtgtttat ttaataaaga gccagtgaag taactgcaat ttcattgtca
      181 atttactaat gcgttacagt tatgtttctg aacctcattg tttgggctca ggagctcgca
      241 gtgcctggcc aaaactttcc cccccttatt cctcccctca agtgtaaaac acgttttatt
      301 atgactagaa tgtcttctat ttatcaaaaa ctgggattaa aacccttgac tcccctccat
      361 gcacatatcc aacttggcag caggtcggtg attaacctcc tgaaagcttc acttgctc
//
LOCUS       KCOD01003329             505 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 370294pyr ultra-conserved element
            locus uce-1454, sequence.
ACCESSION   KCOD01003329
VERSION     KCOD01003329.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 505)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 505)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="370294pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>505
                     /note="ultra-conserved element locus uce-1454"
BASE COUNT          175 a           82 c           78 g          170 t
ORIGIN      
        1 taccatgagg atagaacaaa agaaattaaa acactagata tgccacagtt gtcttatgca
       61 gctgttagaa atttaattat tttatctcat agaataatgt gcccttcaga aatcattttg
      121 gactagatgt ttcaaaccaa tgatctgtag ttaattatct ttaataactg ttgcacatta
      181 tggttagatc tatgtttttg ctaaaccaat taataatatc ttcattagta taaagacaag
      241 gtagctggat cctttcattt ttcacattga aagagtagat attttaaaca gtgtaattta
      301 ctttagccat acattcccga tgatatgact aattaatgaa acttcaaaga catataactt
      361 ccaaaagcta cttatttaaa gtcattgttg agcacttaat gacattatgt tggggcattg
      421 cagaaaccat caccgcctga gcgttgaatt tgctaaacct ttttatgcta ccaaactgaa
      481 ggaagcctga gttatactga aaagc
//
LOCUS       KCOD01003330             731 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 370401pyr ultra-conserved element
            locus uce-5917, sequence.
ACCESSION   KCOD01003330
VERSION     KCOD01003330.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 731)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 731)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..731
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="370401pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>731
                     /note="ultra-conserved element locus uce-5917"
BASE COUNT          224 a          133 c          150 g          224 t
ORIGIN      
        1 gaaagggtca aatccagctg cctttggctt tgctgcaaac tttatttctc agagaagaag
       61 aagctaatat tcaacaaagc ttcaggaaaa aagggcttcc aagatgttac agattttgga
      121 aatatttgac aatgttagca gcatcaacta ctgacacaaa accctctctc cagaaaatct
      181 ttcacagttg tgccaagaaa agcagcttcg atggaacatt ttcataaact atcatcagtt
      241 atgcagcagc agcttcacaa atcagaaatg atatcttcag gcactgctgt caagtgttat
      301 tcaaataata ccagcctcac atttgaataa cagcagacat tttgaattaa ttaatcagat
      361 gagatagtct aggccttttc tcattagtct ctgggtcagg catggaaaga tatatgcgtt
      421 ggtgatgata tacttgtctt taatcgtgat ttatgaagat ttaggattgt gtgtgatttg
      481 tcaaaggttc tgggaaaagg ctggtgcata tttcattacc taatctgaga ttgatttcat
      541 gatgctgaga gatagaaccc tattgttggg ggggctggga agcacaggta gtcacagcgt
      601 cccagggttt tactgtctta tctttgtgac tgtcaaacaa tgctgtaaac ttttactgcc
      661 agcagttaac aattcctgct ttaattatag gcaaattctt cattccatcc aaaggggaaa
      721 ctgcagtagt t
//
LOCUS       KCOD01003331             745 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 370511pyr ultra-conserved element
            locus uce-6989, sequence.
ACCESSION   KCOD01003331
VERSION     KCOD01003331.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 745)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 745)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..745
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="370511pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>745
                     /note="ultra-conserved element locus uce-6989"
BASE COUNT          224 a          139 c          147 g          235 t
ORIGIN      
        1 tttagctaca gagtaaagtg agtggacaaa tcttttaatt aacctccgtc attatacatc
       61 atgccctctt cattaaatag atgtaacagg gagaaaagcc agttgtttct aataattttc
      121 tagtgctttt gtggtttgta tacttcagtg ttctgaaggt cggatagaac taccagacca
      181 taaaatccag ccagtgagag atgtggagct aagagagctc aaggatttat taagtgatgt
      241 gaaactctat tgttttgtgc atgtgttaca taattgctgt cagtgcaagg ctgttaaaat
      301 tccctgctag taataacacg aataccattt tatagcttca agaggagata aaagaagttt
      361 cttagtcagc acttcaacaa tatcacagca catgtcagtt ttattattct ggggcctcca
      421 gttttggcag atgctctcca ttctggctgt ggtgtggtaa ttaccatata aattaagcag
      481 tgaaagagtg cagccttatc cctgctgcct gtaaccaggt tgcaagtatc acagtgtgaa
      541 acaggcataa ttcaggctga ttatatttag aaggccacat tttgaaatcc tggaccttta
      601 tctcaattcg agtcaatttt aaaagtaaat tgaagccgtt tagttgctgt gcaaacagaa
      661 ggatcattct ttctccacaa ggtactctcc ataatagcat tccaggaatc agttcaatcc
      721 atcccagttt gattcatagc cagta
//
LOCUS       KCOD01003332             656 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 370622pyr ultra-conserved element
            locus uce-248, sequence.
ACCESSION   KCOD01003332
VERSION     KCOD01003332.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 656)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 656)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..656
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="370622pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>656
                     /note="ultra-conserved element locus uce-248"
BASE COUNT          218 a          111 c           99 g          228 t
ORIGIN      
        1 attttccaaa ctaatcgtaa ataagcttct gtatattgaa acacgtgcag accagagagc
       61 tttcctcttt ggatttctaa attggttttt agagcaatct gtctattgcc attttatcta
      121 tttaaacaaa cacgataaca gaaaaatgca actatggact gcagtgttat gaaacatgaa
      181 ctgttagagt taacacaact gttaaatctt actaatgatt ctatcaccag taaaatacat
      241 tagcaccaat aattttatta aagtaggtca ttcatctaga ataaaaaggt agaagaatgt
      301 gaattaaatg ccaagcgtgc taactcccct gtacttgtta acattgaatg tgatgccctg
      361 taggccttcc tcagtatcgt taggaataga ttacctgtca ggaatatgta tggcatattc
      421 aaataagcac tgcgcatatt tttaaaactg atatgatatg aatccatgta gaccaatttt
      481 aatagttcaa aatgagtcat aattcttgtt aacaatacag ttatttttaa aatttgcagc
      541 aatagtggtc cttttttatt ttccttattg aaattaaatg atatgcctta ggtgagtcat
      601 tcatcactgt taaaggaact cgccttcttc cctaccatag ttttattttt ctacat
//
LOCUS       KCOD01003333             656 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 370731pyr ultra-conserved element
            locus uce-615, sequence.
ACCESSION   KCOD01003333
VERSION     KCOD01003333.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 656)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 656)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..656
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="370731pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>656
                     /note="ultra-conserved element locus uce-615"
BASE COUNT          231 a          111 c          110 g          204 t
ORIGIN      
        1 tatgtttcac tatttcaagg aaaaaataaa aatcaacagc acacatacca acgggttcag
       61 acttagaatc tccatatctt cacaaatgag atgagatcaa gtaatttttc ttttaaaaat
      121 aacacaagta aaattcaagt ataatgaaag cacatcaaga aacaaactgt acaatttctg
      181 aactgcactg tttattttgc tgcttgaaac ctaagtgaca gtatgccact ataattatgg
      241 ggtttcttct aaacctttac tacactgcag gtacagaaat atatggacac atttttggag
      301 aattgacatt ttgcaaaatg cagcaaacat ttcaatttat acatgagaaa aggaagtgtt
      361 caaaagggta gcatttcaag ttattgcagg ttatttctgt gagagaattt ctgcaggtaa
      421 aacatgttta aatttaacca acagtaacgt gtcagtgtat ttaaaatcat gactctctct
      481 ggtcattaat tgccccttga caaattacta ggatgttgta tgtttagggc aagatgtcaa
      541 tacagcataa atcccgtggc attttggttt tcttctggag attaaagctg tttttttctt
      601 gggataaatg cagcagcaaa acacaaacca gctgatcaaa aaagcacttc tgccat
//
LOCUS       KCOD01003334             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 370840pyr ultra-conserved element
            locus uce-6314, sequence.
ACCESSION   KCOD01003334
VERSION     KCOD01003334.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="370840pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-6314"
BASE COUNT          224 a          141 c          143 g          194 t
ORIGIN      
        1 aagcctccat cacctgcaga aatccctggc ccaaactaca gatgctggtg cagtcgcttc
       61 agttctgttt caccgccaaa ggataaattc aaaggaagat gggatgtact ggcagcaatg
      121 taacacacca aggatctcca ccgagcacaa atctctccca acccgctcta aatctgtttg
      181 ctttcataac tgaaagttaa gagttaatac agcaccttca tgttattaaa tggaacatga
      241 agaacattac attattatgc tgcacatggc taaggaattt tagtattcac aggattatgg
      301 taattaagtc ttccttcact ttgggtgatg tgacacttgc ttgactataa tgtcactcca
      361 cttaaagtct gtgtaaacaa cattatctta gtcactctgc attacatttc caactgtgag
      421 caaaattaca aggtcaaagt ggacaagaat gtaggtaatc ccaaggaaac atcatgtaaa
      481 tgacttgctc aaggttcaag atgggttttc aagggtggta aaaggcttat gtactacact
      541 gatattttag tcctggtttg tagaaggtat cactggcaaa ctgcagtttg tagggacgtt
      601 cagctgttca ggactctgcg taaggactgg gctgccaaac aaatgcacag agtaaaagag
      661 gactgatttt gaacaaaaac tatatggaac cagcagaata tt
//
LOCUS       KCOD01003335             760 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 370948pyr ultra-conserved element
            locus uce-7748, sequence.
ACCESSION   KCOD01003335
VERSION     KCOD01003335.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 760)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 760)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..760
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="370948pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>760
                     /note="ultra-conserved element locus uce-7748"
BASE COUNT          227 a          146 c          158 g          229 t
ORIGIN      
        1 aaataatcct gcccagaaga tggtatcata ttcatgcaca gcagggtgtg caaatgccta
       61 taaatcataa cgtagaatcc gaaatatata taaaaaaaag tctgtgcaaa tttaaccatg
      121 accctttgcc agacaatagg ccttcatatg ctttgcagct tagcagacac caaggaattt
      181 tgtttggaag tgatagctac tgtctatgta atatttagga cctattcatg gagcatctgg
      241 cagaaaataa aagggtttcc tcctctaaca tatgctaaag aaggatgtgg tcctgtgcct
      301 gctcctcctc ttctgacttt ttgcaaatag cacaacataa gagacagttg tttctggctg
      361 ccctgctgcc tgtcatggct gtcaagtgaa atcccatgaa ttattgctct tccagatgta
      421 agagatttcc aggctgcctt aaactgcctg tggtttgtgg tactggagag gagagaaacg
      481 agattaaact tcatctcatc agtgcaatct gaaaagatca cacagaggac taataatcac
      541 agctttttca ttccagagcc ggacccgaga gctctgtgtt tttgtttcag ggctatgtca
      601 tattaagctt gttggaagac attgattaag gtcaaacaat gtttgaagat caaaattttt
      661 aactctgtgt tgctgcatac attttgcatt cttcagaaag tgtcatgcat ttctttagtc
      721 agctgaaaca gaagagactg tgaatggaat tctgagatgt
//
LOCUS       KCOD01003336             390 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 371056pyr ultra-conserved element
            locus uce-4640, sequence.
ACCESSION   KCOD01003336
VERSION     KCOD01003336.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 390)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 390)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..390
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="371056pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>390
                     /note="ultra-conserved element locus uce-4640"
BASE COUNT          116 a           69 c           88 g          117 t
ORIGIN      
        1 atttcttggc attcaggcca gatgcccctg ccctcacaaa ggcaagggca gaatttggga
       61 gcctctggag ttagggaaaa ggtacagaga acatcctgat gaggtagtaa tttaattgtc
      121 taactccttc tgtgctcgag aatatcagac agatggggag gataaaacaa ggagctcaat
      181 aattaatttt catgttcctc actagtggga cctctttaat ccctgttcct gtgattatag
      241 agaaaggttg gattctgaag tttcactcat tagctacgtg ttgtatgaaa atacctgtat
      301 tttcaaaagg aatagtgaca aaaaaatttc tgctattaga aatatcttgg tgtcagggac
      361 ttttgtgaga gaactctgat tccctcagat
//
LOCUS       KCOD01003337             749 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 371168pyr ultra-conserved element
            locus uce-7913, sequence.
ACCESSION   KCOD01003337
VERSION     KCOD01003337.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 749)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 749)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..749
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="371168pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>749
                     /note="ultra-conserved element locus uce-7913"
BASE COUNT          213 a          171 c          162 g          203 t
ORIGIN      
        1 agcagtgaag aggtgaaagg ctgcacatta aacagtttgt ccgaaagcca tgtgcatagc
       61 aaacttttac accagcttta tacaactatt tgttttaact ctgcagctgg aatgtttcca
      121 gcataaggct tttagagtga ctccagcaat aacagaagcc tttggatttt tcttgctttg
      181 tttaaatcca ctagccatac tcaaaaataa tatttcttca tgttttattt ttatacggtg
      241 gctagcaggc accttagtaa ccagccagag atcgatttca accaccatca atccctaaac
      301 tacagtacca ggacggttgg ctaaagaaag gaaactgatt ggctgtagtc tgaaacttgc
      361 ctagtacaag gtgtctggct gactttgtcc taaataaggc taacattagt gaactaagag
      421 aacagcattt ggttgcagtc ttgcactcag gaacatcctt cgccaatacg ttggcaagat
      481 ctccctactt tccgatccag tttcaccatt ttcatgatgg cctcctcgcg cccgcggccc
      541 atgtggtcga acgtgcagtc gtgctgttcg ggcaggcggt gcaacatgca gaacacgtaa
      601 cctgccagag ggagacagtt agggactgct cagagaggtg ggatctcacc tgaaccagaa
      661 gtgagcgaca cccacaggag gattactcag ctctcaaaaa ttaataaagc ttttacttat
      721 gttccttaca gggaacaaat atttggtca
//
LOCUS       KCOD01003338             517 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 371277pyr ultra-conserved element
            locus uce-4827, sequence.
ACCESSION   KCOD01003338
VERSION     KCOD01003338.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 517)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 517)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..517
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="371277pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>517
                     /note="ultra-conserved element locus uce-4827"
BASE COUNT          180 a           87 c          103 g          147 t
ORIGIN      
        1 aaaaatggct tctctgttta aataagggtc caatgcagaa tgagaatgaa tgttgtcata
       61 tgaagtgcat ttcaaatgta ataaagcaga aaggagttcc tggcccctgt gtcagttgta
      121 agagggtgca tactgtgatc actatagctc agtggctgca aagcagaaaa tgaagactgt
      181 aaaaacgtca cataaagaaa aaatgcacag tggattcgtt ttgcgatgct cataattcag
      241 taatgccttt aagtagctag aagaaatata ataaatgttt ttccacaaca ttgatcatac
      301 tgtatcagag gaaatattag tgtgcaggga gccatgatta tgctggtagt atgcagaaaa
      361 ctcctagaag atgggaccct ttataggctg aacttttatt ggctgcagtt atttaccttt
      421 aagaatacgc ctaatacact gtcctatagc taaatatttt tgtgaaaact caaaccagca
      481 actgtcagta aatcaaaaaa cctgctacca cttcata
//
LOCUS       KCOD01003339             879 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 371389pyr ultra-conserved element
            locus uce-1094, sequence.
ACCESSION   KCOD01003339
VERSION     KCOD01003339.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 879)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 879)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..879
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="371389pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>879
                     /note="ultra-conserved element locus uce-1094"
BASE COUNT          266 a          144 c          161 g          308 t
ORIGIN      
        1 tattttaatg atatttacgc ttcacagaac taaagcaaga aaaattttac atcaccttgt
       61 gtgcctcata tattgtggac cagttatcca tcataaacaa tggttgcaaa ctaggttgca
      121 aacaaatttt gcctaaggca tgaaccataa attaatgtaa taatcatccc cgtaagagac
      181 aacttttttc cactgctctt taaaaaagaa agtaggtcag agaaatttag gatattttag
      241 agtacgtaca gtattgtatt gtttgccagc acctaattta caattacaga gctgcatgaa
      301 tattgaaatg attcagcttc ccattataaa tgtatgtggc agtttggttg ttgatcagtt
      361 tatgaagtta atgcaaatga aactgtcttc ctgtcagcat ttgaaatata taatgcagtc
      421 atgttgtata ttcagggaca ggccattgac agtcaattaa caagtttgat tggtatgtca
      481 actcattctt ttgaattgtt aatagtatgt taatagcatt catttctttg tgcagtccca
      541 tttgcagctt cacagttaca gctatttttt atgattctga gtaacctaaa atagtgcctt
      601 aataatagat tattaaacac ctgtctggtg tagcttaggg aggtttttct agactgggag
      661 tttgcagtgg atccctttga tattcaaatc aacaaatgat agccttttta ttcaaaacgt
      721 aagttctttt gatggttagc ttgttaagaa atattcagct ccagtctgac ctgatctggt
      781 ttcccatgga aaagatctga tgctgtttga aggttcataa atggaatgcc aatgacaatt
      841 tgttgttgac gttttgctgc ctcagccttc agatgctgc
//
LOCUS       KCOD01003340             659 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 371494pyr ultra-conserved element
            locus uce-6383, sequence.
ACCESSION   KCOD01003340
VERSION     KCOD01003340.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 659)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 659)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..659
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="371494pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>659
                     /note="ultra-conserved element locus uce-6383"
BASE COUNT          160 a          141 c          163 g          195 t
ORIGIN      
        1 ttctcctagt ttgcaaccat gtgaaagaat taccaactat ctccagagct attttaaata
       61 gctatttgat ttggagggat gtctgtgcca tcctttgcgg ttggccttgt tacaccccag
      121 gagagagctc acaaccactc tgaccccttg cccatcctct cccagtgata ttttgcttcc
      181 agtttggcag tgagagatga tgtaggttgt ggatatagca gggaattgtc tgtctattgt
      241 tgaacttaga gaaattaaaa gaagaccttt cgacctttga tcaggtcttg acaagttcct
      301 gctttttgcc cgaaggatgg acatccgtcg gatcagcttt gacacagatg acttgtcaga
      361 tgatgtcatc ccccttgctg atgttcgcag tgctgtggct ctagattggg actcaaagga
      421 tgactatgtc tactggacag atgttagcac tgactcaatc agccgagcaa aatgggacgg
      481 atcaaaccag gaggtacagt gttcactatc atctggccag gagtccttga gcatcagatt
      541 gtgggataca ctggcggttc gcggtggatc ttttgctcat taggcaaact aatgagatct
      601 ggacacttcc aagttgggta aaactttgaa tggggctgtg gtcaattcct ttgctgtag
//
LOCUS       KCOD01003341             747 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 371602pyr ultra-conserved element
            locus uce-4426, sequence.
ACCESSION   KCOD01003341
VERSION     KCOD01003341.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 747)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 747)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..747
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="371602pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>747
                     /note="ultra-conserved element locus uce-4426"
BASE COUNT          251 a          128 c          168 g          200 t
ORIGIN      
        1 gctgccacat tcacagcttt tcaagtattt ttaaatcact tacaaaagca ggattaaatg
       61 atcaggaatt ccatttaata ggacaaataa agaaataaca atctactcca tcagccctgt
      121 gaaaggcagg tttgatttaa gaaaaaaata aattaagtat aaaagaggga gagaaaaaag
      181 gaaagggagg tggggataat gtgtgtttac tcaagcaaag aaaaaaatat ttaagtgatg
      241 taggggagaa gattgcagta actagtgaag aataacatcg tctgctttgc tgtcaaatca
      301 cacaagaatt tcagtaatag attctcattc tgacactcaa ttcaattcga aggtgatcct
      361 gctttatccc aacacatcaa atattaaaca ctcgtattag ccagggtgcc gtcgcctttc
      421 ccggcttaga cgcggcagga agccccctac tttctctcac tcgctataat attctcaatg
      481 ttatctaaac atgccttcat acactggggt tccttatcaa tcccatttgg ggagggagtg
      541 tacttaaaat ggtattagtt tggggggctt ttattattat tatttccaaa gcttttcaat
      601 tttgtgtgga aaaagcttag aaaaaagagg tggagggagg ggaggcagcg agagagggag
      661 cgcgggagcg agagaaagta taaaaaaggg aaaagcagcc agcagctctt gtttgactga
      721 tgcctttcaa caagggcagt ctagctt
//
LOCUS       KCOD01003342             571 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 371713pyr ultra-conserved element
            locus uce-1271, sequence.
ACCESSION   KCOD01003342
VERSION     KCOD01003342.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 571)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 571)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="371713pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>571
                     /note="ultra-conserved element locus uce-1271"
BASE COUNT          163 a          128 c          131 g          149 t
ORIGIN      
        1 ctggagcgac ttttattgct attgtttgtc tacaaatctc cccgtgccaa agttgtccaa
       61 ggctttgcta ttaatgactc atgagtacaa taatgctgcc agaacgtact taaaaaactg
      121 ttgctatttg tttccccaga actttgcaca aatgtctgtg gagtacccgg gctccccctt
      181 cactctcagc gctgaccttt gtgctctgga aacaattact cctggaaagc ctgtcaatat
      241 cattattttt acaagaaatc aatacgcttc acaaagttaa tgggggattc aggcagcaag
      301 cgtttacctt cttactgtca gtggtgcagc gggctgtgct ctggcacaga tgacagattc
      361 gcctagacac cgagcagaca gtaagcaatg gatgtaaagg aaaaataggc tgcaagcagg
      421 cgtggaaaac gtcagcttct gcaggcatct atgctctaac gagccaaaga tgtcagcctc
      481 ttgtagtgtc cactctggag caagctaaga atacagggag ctaatgaaag ggggattagg
      541 gaacggtttc cacttcgcaa atagaaataa a
//
LOCUS       KCOD01003343             522 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 371823pyr ultra-conserved element
            locus uce-7694, sequence.
ACCESSION   KCOD01003343
VERSION     KCOD01003343.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 522)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 522)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="371823pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>522
                     /note="ultra-conserved element locus uce-7694"
BASE COUNT          166 a          107 c          115 g          134 t
ORIGIN      
        1 agaggggatg ctttttatta gcaagtctca agggaattaa tttcatcagt gcagcagggc
       61 atgagcaaac caccaatgaa cttgaaagtg cattataccc attaaaaggc atgaattttc
      121 taaattgcta atggggatac attttacact cagagcacta acctgaacag ctcttgtatg
      181 gctggttcca cgggaactgc agagagatgg aaaacatata aaaatttatc atctattaca
      241 agtacccctc ttctacagaa aattaccaga aaggttgtgt aaaagcaagg gtcagaatga
      301 atcgtgcaaa gagattctgg aggatgaagg tcaccctgag caagggcttt gagtgattta
      361 ctgaagcaag agacatacct cgaacacctt tggagcgtgt gcgatggcgc ttctcgtctg
      421 catccacctc catctgggaa tagattagca ggcagtcaat gttcttatcc tgcatgcaca
      481 gactatcaat gcacagactg atacagtctc tcacacgatt ta
//
LOCUS       KCOD01003344             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 371935pyr ultra-conserved element
            locus uce-2605, sequence.
ACCESSION   KCOD01003344
VERSION     KCOD01003344.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="371935pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-2605"
BASE COUNT          197 a          136 c          134 g          235 t
ORIGIN      
        1 acctttgcac acttgtatgt ataccaatct tcatccacta ttttgtattt actgttatgc
       61 aaaatctcca ctttgctccc tcagcagtat ttatgctctt taaaaccctt actctgttct
      121 gaagctgttt catgtttgtt ttcaaagact ttttgtaaga tattagtggg ttgtgtgaca
      181 gtaaaaataa gaaactacct ttccatttgg gctagaactg agatgaaatg aggaatggct
      241 gccaccaagc agaaaatttt ctcactttat gtgtgccagt taattacgac acttcagagg
      301 cgcttctgaa aggataaggc aagctgcata aatttagctg taatccaggc aggcaaaact
      361 aatttgcagg ggatggcctt atctagctgc tgcagctttc tcagaaaatt aaccttggat
      421 atttgggccc aattcagaaa gtgtttgacc ctttcctgct ctgcataaga gaattttaaa
      481 ttcaatacaa tacctgactt ttaagaggca ctgtgaatgc tgtaggcagt tcagagttat
      541 tactgacaag ctatatttat atacgtacat atatatgatt gtccttcagg cccattttcc
      601 tgccttcttg cctgtgcatc agagggttta tcaccacatg tatgggtggg gtctttggat
      661 taacagaaga tgcagctcat tttaatgtac ttagaaaaat tc
//
LOCUS       KCOD01003345             588 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 372040pyr ultra-conserved element
            locus uce-7554, sequence.
ACCESSION   KCOD01003345
VERSION     KCOD01003345.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 588)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 588)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..588
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="372040pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>588
                     /note="ultra-conserved element locus uce-7554"
BASE COUNT          158 a          131 c          121 g          178 t
ORIGIN      
        1 cctcccacat tgagatcttt cctgatagct gtgtatttgt tgttcccagg aagtagcctt
       61 cagttttatc tcttggaaaa cagcagctct tcccctcttt agtagtgaaa agaactctgg
      121 ggttggagta catctaatgc aatggtcatc tgagcacaga cctattttat ctcctttgaa
      181 ttctgtgtgg tttcaaaatg tagcagagcc tcagcataca ctgaaagtta attaaaatga
      241 aatatgctgt gctgtccttt ttcagcaagt gggatctcag cgtttcagtg tcaacatgcc
      301 tcacaagttc agcattcaca attacaaagt gcccaccttc tgtgaccact gtggttcatt
      361 gctctggggt cttttgagac aaggtttaca atgcaaaggt aaggcacttc agagcagtga
      421 cctgtagact caggtacaga aatgaatcat catggttcgg ccctttactc tgttggcaac
      481 accagtcagt aacaaatgca gagctcagag cactcactcc tttattgcca ccaggatatt
      541 agaagttaac agagtagcat gacaatttac atcccgtgtt ttcaggtt
//
LOCUS       KCOD01003346             454 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 372149pyr ultra-conserved element
            locus uce-6855, sequence.
ACCESSION   KCOD01003346
VERSION     KCOD01003346.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 454)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 454)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="372149pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>454
                     /note="ultra-conserved element locus uce-6855"
BASE COUNT          155 a           67 c           97 g          135 t
ORIGIN      
        1 cagggcttta tctagtaaag agaaaagaaa agtttcaggt tcagaaaaaa atgtataggc
       61 atttgcatgg cacagctttt atataagtgt ggtattatat aacagatgga agtttaatgg
      121 agtaaaacat agtttgtaac aggttcattg tttcatatgc tctggatcac taaattggca
      181 ggtagagatg aaaggtgcat taaaatggac gtcctgaaaa ttatagaatt ctctcaaagg
      241 aatagtcttt aattttgaat tatacagcta attttaatga attggaagcc ataatgcata
      301 acctttcttt catgcaggaa ggaactgtga gctgtgcaag gatttccatt acagacaagc
      361 aggtgcagat ctttcagcca ttgatgtttg caaaccctgc gactgttacg caacaggcac
      421 caaaaataag agcctcctgt gtgataatgt aagt
//
LOCUS       KCOD01003347             285 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 372257pyr ultra-conserved element
            locus uce-6619, sequence.
ACCESSION   KCOD01003347
VERSION     KCOD01003347.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 285)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 285)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..285
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="372257pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>285
                     /note="ultra-conserved element locus uce-6619"
BASE COUNT           91 a           59 c           54 g           81 t
ORIGIN      
        1 cacaccacca tgagctgcct ctgtctagaa tatgtttcct tcattcagga aagtgcagta
       61 attcatcagt gatttaacct atagacattt gaaggttgga gagcacctca gaggggctgt
      121 tgaccttcag caactgaaag aattgaagct ccagccttag tcaatatata tttatctttc
      181 tgttgggact attacaactg ttcaagtaat gctgaccttg aaacttctgc acacgatgca
      241 ccagaataat gatccctgaa ggaagagtat aaaaatacct aaata
//
LOCUS       KCOD01003348             547 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 372362pyr ultra-conserved element
            locus uce-2383, sequence.
ACCESSION   KCOD01003348
VERSION     KCOD01003348.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 547)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 547)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..547
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="372362pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>547
                     /note="ultra-conserved element locus uce-2383"
BASE COUNT          164 a          107 c          101 g          175 t
ORIGIN      
        1 ctcagcttca gactgaccaa attctgacca aataattttc ttacaggaat gtctgctact
       61 ttcattaatt ttgggtacac tctctgcttt tcagcagtca tcctacaaaa ggtgggttac
      121 ttaagaaaca attaggtgcg tatacaaaac aatttgcagg cagtcttact ctttcagctt
      181 cctaagtgaa gtgcctttca aggctgattt ataacactgt cgtcttcaga aggcaaaata
      241 attaatagga gcacggactt ctaatttcag tgacttccag agaaagtgga tttcatttga
      301 tttatgatgg ccggtgactt tgcattttat cagttcattc actcattatt tatgctgatg
      361 accaatttca atgggtcgct atcatctaac tcgctactaa tcaaagagaa ttagggttca
      421 ctgcattatt tagaagccac taatttatct tcagaacaag tatcaagaat agtttggggc
      481 cttctacact aagaagaggc acagctggca aagtcacagc atttgcgtgg tattacaaat
      541 gaatgtc
//
LOCUS       KCOD01003349             652 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 372472pyr ultra-conserved element
            locus uce-5120, sequence.
ACCESSION   KCOD01003349
VERSION     KCOD01003349.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 652)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 652)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..652
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="372472pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>652
                     /note="ultra-conserved element locus uce-5120"
BASE COUNT          186 a          138 c          139 g          189 t
ORIGIN      
        1 ctgggatttc actaccttac ttttcgtttg gcttcacgct gaaaaaaggg atttcttata
       61 tttgctctcc acgcttttgg ttataatcca gtgttggtct agagggaaca accgttcagc
      121 ctggctgaaa aaaaagcatc cgttgaaaag tctcaaagaa atataccacg tgaggaaaaa
      181 aaactgggag aagatcggaa tataatcgtt ttttctatga taaaactggt gcccctcttc
      241 aggagaactg atctcaattt attattatgc aaccacaagg atctcttctt tctcagggtg
      301 tataagctgc tggattgctt ttcgcccaaa tcaatgtggt ttctttggaa cattttcagc
      361 aaaggatcgc atatgctgca gtgtctttgt ggcaagagtc ttaagaaaaa caagaaccca
      421 actggtaagc aatccattgc aatgcgttgt ttttctttaa tgctaccctg tctgttgctc
      481 gccgaggtag atctgcaatc ctgctgaggg gagtcgaggc cagcacggac acatacgtgt
      541 atgaataagc aaggaacggt ttgtattatc ttcagcccac cgaaaagggg taacatcaaa
      601 ggccatccta gcccagctat ttccaaggag gaaactttta tatcactacc ct
//
LOCUS       KCOD01003350             542 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 372584pyr ultra-conserved element
            locus uce-7997, sequence.
ACCESSION   KCOD01003350
VERSION     KCOD01003350.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 542)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 542)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..542
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="372584pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>542
                     /note="ultra-conserved element locus uce-7997"
BASE COUNT          152 a          134 c          116 g          140 t
ORIGIN      
        1 gaccaggccg agagtctaca attctccaac aaacagctcc tccacccagg attctatgga
       61 ggtgggccac agtcaccact ccatgacatc cctgtcttcc tcaactactt cttcctctac
      121 atcttcctcc tctactggta accaaggcaa tcaggcctat cagaaccgcc cagtggctgc
      181 taataccttg gactttggac agaacggagc tatggacatg aatttaacag tctactctaa
      241 tccgcgccaa gaaactggca tagctggaca tcccacatac cagttttctg ctaatacagg
      301 tcctgctcat tacatgactg aaggacacct tgccatgagg caaggcattg atagagaaga
      361 gtctcccatg acaggagttt gtgttcagca aagtcctgtg gctagctcgt gactaaactg
      421 tttgtttctt gtgtgttttt atagaagtgg tgaaagtgca aagctgcttg aatcagaagg
      481 agataaaacc gctacaggag ggcaaagttg actatttttt taaacttgaa aagattgcaa
      541 ag
//
LOCUS       KCOD01003351             682 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 372691pyr ultra-conserved element
            locus uce-1102, sequence.
ACCESSION   KCOD01003351
VERSION     KCOD01003351.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 682)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 682)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..682
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="372691pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>682
                     /note="ultra-conserved element locus uce-1102"
BASE COUNT          222 a          146 c          129 g          185 t
ORIGIN      
        1 aatgaaagct ctctattaac agtgaacgaa gaatttaact caaagctttt ctgtaggact
       61 tctcaacttc ccgctctact tatagcagac tgttgtgata cattgtgact tcacacagtg
      121 ggtattaagt gagttaattc aaaggagctg aaacctcatt gatcctaatt gaaagcaata
      181 cacccaacca aatagttttc taccccatct gctctggcct gccaccagct attcaataca
      241 agagaattaa tagtttcaga tattctaaca gacccaataa aagcactcat ttaagcagga
      301 ctgcattaac aaagtgaaaa accaagggca aaatgggttc aaatggagca ttttactcct
      361 agttggcttt aacaaagctg aataatgctt attctgactt tttatgtgca agacttgata
      421 aactgaatga gaaggcactc aatgatcagt caacgagcat tgatgaatgg tcattaggac
      481 ccccccaatc tcagggaagg ccattccaca aagtggcaca ccagcttgaa agggcggact
      541 cactaatgtc cagatttccc cgcttgcttg ttccactttc actttcagac cagtagccac
      601 caaatgaggc tgacatattg gaaaataatc ttttatgggc gagtggtaaa taaaaatgga
      661 ggcattagct gggctttcaa at
//
LOCUS       KCOD01003352             477 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 372799pyr ultra-conserved element
            locus uce-5557, sequence.
ACCESSION   KCOD01003352
VERSION     KCOD01003352.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 477)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 477)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..477
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="372799pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>477
                     /note="ultra-conserved element locus uce-5557"
BASE COUNT          117 a          116 c          112 g          132 t
ORIGIN      
        1 gagtgcttac aaatattaat tgaccaggta gcttgccctc ccctaattac ctatttagct
       61 tctttctttc atggttcaaa ttggcacaag agccagagtc gggagatggc ggccacaaga
      121 ggattttaat ttattgacgg ctcttgccct actgtacagt cagcgctgct atttgagcgt
      181 aatggatgga acagatgttt gacaccgcag cacctcttca taacttcact cttcaaaaac
      241 agttttacaa gtgctcgctc gcgttggttc ccattcagca caggaaactg aggtcatgct
      301 gaaacatgag gcccgggcag gagcttgaac tcatgtgcac tgcagctggg cccgcgcctt
      361 ccgagcggcg atccacggag ctgccgtcgt ttaaggaatc gagctgttga cactgtaaca
      421 tctgcacgaa aatatgagcc caattttgtt catcatgttt ttaagaattt cttcggg
//
LOCUS       KCOD01003353             326 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 372912pyr ultra-conserved element
            locus uce-4452, sequence.
ACCESSION   KCOD01003353
VERSION     KCOD01003353.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 326)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 326)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..326
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="372912pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>326
                     /note="ultra-conserved element locus uce-4452"
BASE COUNT          100 a           56 c           66 g          104 t
ORIGIN      
        1 ttttcagtag ctgaagtaga ggcacccaat tagttcagtc attaaaaata ctaacatatt
       61 cctgaaacat aaaatttcct ttacgattta cctccatact gttctttgta ggacaagctg
      121 ttcttttagg tagaagagtt tttctgcgaa gttggtatgg actgttttgt gcaccaggac
      181 ctgattcttc tgcaaccata tctgcaggta catcatcatc tgttgataat gagaattgta
      241 gttctacttt ataccaggaa aatgctacag aaatttacat agtcagaagg gtgaggagga
      301 agtgctgaag aacagagaac ttctag
//
LOCUS       KCOD01003354             613 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 373016pyr ultra-conserved element
            locus uce-2577, sequence.
ACCESSION   KCOD01003354
VERSION     KCOD01003354.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 613)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 613)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..613
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="373016pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>613
                     /note="ultra-conserved element locus uce-2577"
BASE COUNT          179 a          130 c          121 g          183 t
ORIGIN      
        1 tatttctcct cagcaagagt aaaacttgag catggccagg tgttttcact tcagaggctc
       61 caatggcaac aacaactcca gtgcttggaa gctaacaaat ttgttgtgtc acaattgata
      121 atcaactcta gtaaaagaat gtccaaatca attgagcttt agcaagggca aactgactgg
      181 acacagccag actcccagca aaagtaggcc aagcttgata aatttgccct tattatagct
      241 attgatgttt aaatttcttc agggatgttg ttacatgggt gcctagtggt gacagaggta
      301 cgatgacctc cttcgatcct taatctacac ctgttagttg gctccctagt tgcttgtgag
      361 tatactcaag cttaaaggtt aacaaaagaa aaacaggcca agtttacgcg actgcagcaa
      421 cggatcaatg cagagtaaat aaccttctct gtcttatttc cccaagcatt attgatccga
      481 gttctttgtt ctttgtcatg tttctgtctt ctaatcccag gggacactaa acgatcggct
      541 catattggac atgttaactg gcacattatg acagctacca ttttgtcact caatgtggtg
      601 ctatatataa aga
//
LOCUS       KCOD01003355             675 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 373125pyr ultra-conserved element
            locus uce-4195, sequence.
ACCESSION   KCOD01003355
VERSION     KCOD01003355.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 675)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 675)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..675
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="373125pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>675
                     /note="ultra-conserved element locus uce-4195"
BASE COUNT          181 a          131 c          123 g          240 t
ORIGIN      
        1 ctttccttta ttaatagcaa ggcttgcttg tgaaacccaa agggttaatc attttctgct
       61 ttggaccagt agatgatttc catcattttc agcatttgac tatggaacat gtataaagtt
      121 gttatacctc tctgtaattc attctgctgc caacttcatt cccttttctc tgcctgcatt
      181 ttaattgaaa caacatttgt atttttgagc caggatctgt cagaagtccc tgtggctagt
      241 ctgtggtaca agtagcagca gacgtggctt acccatatgg tgtggtgctt cttgtaaaat
      301 ccatatggcc ttgttgaagg gaatcccagc ggggatgtga agggtgttaa tacccttcag
      361 gccaggcctt tccctcctgg ggcttctatg gcattgtctt tgcaatctgc caaagcacaa
      421 acttaattct tttttaataa tcaattattt cagtccagga acgttttttt gcaatcatat
      481 attccttgaa cttattattt gtttttggcc aaaaagcctt ttcaaaaaac tctaactttt
      541 gcttgtattt tcaggaagtg ctgaacagcg ttccaaagtt ctgctttcct tttgacgttg
      601 aaaggtatgt gctacagtta tcatttaaaa aatatttcat agaaaacata attacaagca
      661 aggatttaaa gaaaa
//
LOCUS       KCOD01003356             230 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 373232pyr ultra-conserved element
            locus uce-3384, sequence.
ACCESSION   KCOD01003356
VERSION     KCOD01003356.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 230)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 230)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..230
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="373232pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>230
                     /note="ultra-conserved element locus uce-3384"
BASE COUNT           78 a           35 c           57 g           60 t
ORIGIN      
        1 tgtcaaagcg cttgggattg aagagactgt tggctacaat tgactgtgac aattaggaga
       61 tgatcagagc cctagagtgg agcacttaaa gggtaattta catgtcagtt tgtcgaataa
      121 aaaaaagata ttcagctaag accccttaga gccttgtaaa ctgcaatttg tgctatagta
      181 agaaaaacct ggcagaggag ttaggatagc catttccatt tgaaaagagg
//
LOCUS       KCOD01003357             536 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 373342pyr ultra-conserved element
            locus uce-1036, sequence.
ACCESSION   KCOD01003357
VERSION     KCOD01003357.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 536)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 536)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..536
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="373342pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>536
                     /note="ultra-conserved element locus uce-1036"
BASE COUNT          140 a          124 c           97 g          175 t
ORIGIN      
        1 agctatttag atatttgttt ggtctgtctc tggatttttc attaaaaata tgtggtttac
       61 agcagccaac ctgatttgca tgtgtgtgtg tgtgtctgat ttgttcaccg ctatgcctcc
      121 tgtgtcctac atcttaatca catccaggca cccgccccat tacattacca gaagggaagt
      181 gatggacatc ccttgactct cttcatgacc ctctgataat cctgtttcac acacaggctc
      241 cctgctgtat gaaacacaaa agctgccact gtagttcttt acttccagtc gatattctga
      301 cagacttgat ctagcaaatt agtatgccgt ggtaggggca cgacaaaaga cccttttgac
      361 acactgaatc gatacaaagg ccaacagaga gccatttcac cgtagttctg ttatttttcc
      421 ccttttgatg acccttcttc ttcttctttt tttttagctt gtatgacctt gtcagattta
      481 aaaacataat gttagaaaag tcatccttgg acaggagaag aaaaatctaa acatgc
//
LOCUS       KCOD01003358             651 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 373453pyr ultra-conserved element
            locus uce-5847, sequence.
ACCESSION   KCOD01003358
VERSION     KCOD01003358.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 651)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 651)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..651
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="373453pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>651
                     /note="ultra-conserved element locus uce-5847"
BASE COUNT          202 a          115 c          115 g          219 t
ORIGIN      
        1 agttgctatt acagcaaagc taaaggattc gttttcaaac atacgctgag atttaagtag
       61 aagcataatt gattgggtac tagctctcta tagtaggtaa ataaaaataa aaagacttgg
      121 cacttttaaa aggtaacttt accaaagaac aaagagccag taaccaataa ttctgatttg
      181 tctcagcatt gcgtcttctg tactctttat ttttgccgga ccagtttgcg gttaagagaa
      241 tgtgcctgta catttgcatt taggttttat aattttaatt gatgtatgga cacaaaagca
      301 tgaaggaaga cttggatcca agcagtgcca cactttacat catcactaca agtgttaagt
      361 gtaaagaaaa ccaattttga aactatgaaa ttcctgattc aagttatttg tacttcacat
      421 attagataat tcactgctac taaagctctt tattacaatt gcatatgttt taaatcgaat
      481 gataaattaa gttgtcttcc aaaactgtgt acttctctgg tcagctgtat atgatcagtt
      541 atctacctca aagtttattt ccttttgtat tgggacaggt tgctggccct ccctgtttcc
      601 acagaccaaa tcatcctagc tcgggagcta gggctaagca gttgtttctt t
//
LOCUS       KCOD01003359             363 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 373565pyr ultra-conserved element
            locus uce-7578, sequence.
ACCESSION   KCOD01003359
VERSION     KCOD01003359.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 363)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 363)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..363
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="373565pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>363
                     /note="ultra-conserved element locus uce-7578"
BASE COUNT          114 a           65 c           78 g          106 t
ORIGIN      
        1 aacaaataca aatacgcttc tgtattaatc tagaaagtaa attgtgtgag gaaaaccaat
       61 ctgaagcaaa tgcggtattt tcttttcaca atgcatgaaa catttcaagg aagtcagaca
      121 tgatctgcaa aaaaataact ggaagagtcc cttacctgcc gagagatgga gctgcttgta
      181 ggatctggca ccgcagaaat aaggttggca gtgctctttc tatgaacact attcatacca
      241 ggcattttag tgattttaca ggctttgcta ctagaactag agtttttacg tttttttcct
      301 tctgatttgt caaaagaaag gggtagagaa gacactgcat tatgtgctcc cagggagtgg
      361 tcc
//
LOCUS       KCOD01003360             779 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 373676pyr ultra-conserved element
            locus uce-6472, sequence.
ACCESSION   KCOD01003360
VERSION     KCOD01003360.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 779)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 779)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..779
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="373676pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>779
                     /note="ultra-conserved element locus uce-6472"
BASE COUNT          251 a          133 c          143 g          252 t
ORIGIN      
        1 aagagcacta aggaagatga tggattaaag cagatgcaga ctgtttgcag ttatataaga
       61 ctattaggta ccctgcttgt tctggctttt gtaatttgtc catgtcctac tttatataac
      121 tcaatccatt gtgagcaaaa acatgaaata ccagaatagt tcatatttca ttttgtcagc
      181 aaattagaag aaaacacaat agacatcata tttgctgagt atagaagtga gtactttttc
      241 atatcaaagg agtctgaaaa gaacagaagg ttaagaagat ttctttttac aatgagcaga
      301 tgtgcttgtt actgttgatg gacaagctta tccatttaca tcaattaata tcaacagcaa
      361 gcacatcaat atggaagctt gtcctgacgc cttgattttt tcccatctga caggtaatag
      421 tagggctggg aaaatgtcac aacaatttag tcatgcttca ctggctttaa ctagttcagt
      481 gacaatggga atgcatcatg ctaagattcc ttatgattcc taatggtact gcattagtcg
      541 gctattgcag aggatttaaa ctagtctttg tcaattaagg gtttaaggtc aaatcctctt
      601 ttttcatttg tgcattaagt aaaagcaagt taaaatattt atgaatggca ctgaaatgtg
      661 gaaactttct ttaggaacct gtcttttcat attgagtcat aactgaaacc aacaatgttt
      721 gacaaagaaa ggctatttca tcacatggca tggcttatcc ctccccttct ctaaagacc
//
LOCUS       KCOD01003361             283 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 373781pyr ultra-conserved element
            locus uce-6032, sequence.
ACCESSION   KCOD01003361
VERSION     KCOD01003361.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 283)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 283)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..283
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="373781pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>283
                     /note="ultra-conserved element locus uce-6032"
BASE COUNT           79 a           61 c           54 g           89 t
ORIGIN      
        1 ccccatcccc cttccctcca actttgctat ggctctctaa atagcccagg agagataaat
       61 caaagcctga actgtaacct tacacttata tacttgttaa gtgacttttt tacggtctgt
      121 tattgctgga aattggattg cttttaaact aatgttgtct ggcgggcaaa agtgagtgaa
      181 atcgcaaagc ctggaggaac actaattact tgttttaatt agcagcaact ttcactagag
      241 tataatctcc ctacaggcca cttttcggta ggtgtggaaa att
//
LOCUS       KCOD01003362             738 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 373886pyr ultra-conserved element
            locus uce-6692, sequence.
ACCESSION   KCOD01003362
VERSION     KCOD01003362.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 738)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 738)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..738
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="373886pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>738
                     /note="ultra-conserved element locus uce-6692"
BASE COUNT          201 a          124 c          159 g          254 t
ORIGIN      
        1 tctgtgtaag attgtgaagg cattcctaat taggtcgtgt caaacatttt ttttaatagt
       61 agatgtaacc attgcttaac tctctttgtt ctttacaaag aaattgtcta aaccacagtg
      121 cagcttatgt actggggcaa aagccctgta gttttagatc atttgcgatg gtatggggtg
      181 tactctgtgt tctgttggat cattgaaaat ccagaggacc agcagtgaat gttttaggtt
      241 tgcacacact tgtaggatac cgcattgtgg gaatagtgct gagttccctg ttatcatgca
      301 agcaattgct aactgtagac ctctgacttt gtaatttgtt ctttatggac tagcctgcag
      361 ccaataagca aaatcaatag tctttgctgg aaagtaagca agtgccagtg tgttatgtga
      421 caggtgaaga tacatgtgct taccaggggt cagggggcca catcaaattt ctctctgact
      481 tcttttcaaa aagctaaatc catttaggga gcattcgtca ttggaaaatg ttgcagtggg
      541 gaattagaca ggctcctgct cttcttttct catttaacga tgtttgtttt caacagtctg
      601 ttcaataatg tcactgagaa gaaattatgt gagaagaata aagtgcttat agtctattta
      661 tttattcatt catttctgta gaataacact agctgttgcg ttctcatgtt tattaatggt
      721 attgtggcag tccaaata
//
LOCUS       KCOD01003363             716 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 373995pyr ultra-conserved element
            locus uce-3987, sequence.
ACCESSION   KCOD01003363
VERSION     KCOD01003363.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 716)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="373995pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>716
                     /note="ultra-conserved element locus uce-3987"
BASE COUNT          211 a          186 c          144 g          175 t
ORIGIN      
        1 gttcaagtct cggcagcctg catgccgctg acagttccaa gaaaaaatga acctatttgc
       61 ccttttcttg gtctgaaatg ccaaaataga aaagcacaac tagagtcatt aaaaagaaag
      121 aaaataagca ctggcttatt acattagctt cccgagcaaa atccaaattc agtttttcag
      181 ccttcacaaa agagcaaatt ctgcgtctac agttggctgc agtgaaactg tacatcttga
      241 ctttttacag cttttccata ctggggccca cttcctgccc agttgaagaa aaaaatctgg
      301 cctgaagatg aaatgactgc ttaacattac actaaaacat ctggtaccat tttatacaca
      361 gacccatgtc tgagagcagg caattctagc ggtctcacca gcggcacagt gcatacccaa
      421 acctccccag ggtgacatca tcccatatat ggactctcag gcccagccct cccccttttc
      481 ctggtcctaa attcattgcc agatccccag tctgctgcaa atgtgccacg tcaagactgg
      541 aaatcacagc acttcagtgt gtttcagtga gtgctgcaga gtgtgaggga gagccgagca
      601 caacccgtga tgcaggaagg cagtttttcc ccgagactaa aagaggattt aaaataaata
      661 aatagacgcg tccggagatc ctgctccgtc gccccagtgt tcagactacc tgttca
//
LOCUS       KCOD01003364             719 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 374100pyr ultra-conserved element
            locus uce-4435, sequence.
ACCESSION   KCOD01003364
VERSION     KCOD01003364.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 719)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 719)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..719
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="374100pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>719
                     /note="ultra-conserved element locus uce-4435"
BASE COUNT          206 a          141 c          141 g          231 t
ORIGIN      
        1 aaaggtttgt attacaaata aacaaaactt gtctttttta agtgaacaat ttaggaggca
       61 atcatttttg agattaatca caatttttaa aggtgttctg cccaaagaga gctatatctg
      121 aagaatctct ctggggctgt ggagtaaaga agagcctata gatcacagcc tacagctttt
      181 atcaccagct tatcagagga aggtgtcacc tggcctgtga tttctaacca ctgttctata
      241 ttctgtttta atgtaaacct cttaagcgtt tcttgcagcc agttacactg tgtgttctca
      301 tcaaggctac tgttataaat ggcacacatg catattgatg ggaatgagtc aaagacattt
      361 gtaagtcaca tccttgcatc ccaaatgaat cctgcataaa cactacaacc ttttataact
      421 gctgacgaca ctcgagtgag cagaagcgct ctttgctctt tattggttta agcagggatg
      481 gtttagtaga gaaaattaaa cttttatatc actgtaatgt acatcccaat atggtgaggt
      541 acagatgtga gatttctgtc tccataaatt gaagtcgtgg aacaaggaag gtcattggaa
      601 gcctcctgct ctcctgagct gacaagcagc aaaactttac tggcccttag ctttctttgc
      661 ttccttcttg gttcaaaact gttctggctc ttcctttcta atgatgtagc aatagtctg
//
LOCUS       KCOD01003365             661 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 374205pyr ultra-conserved element
            locus uce-460, sequence.
ACCESSION   KCOD01003365
VERSION     KCOD01003365.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 661)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 661)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..661
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="374205pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>661
                     /note="ultra-conserved element locus uce-460"
BASE COUNT          219 a          119 c           93 g          230 t
ORIGIN      
        1 ttcaagacac tataaaaaca caacaaaaat aataaaaatt ccttttgtct caaacacata
       61 ccttagcagt aagggatgta tccctaaata tttcctcagg aaaaattaat gaagcaaatt
      121 aaaagttctt tcaagctgtt ccaaacaaac tcatttcaca gccttttatc atacttcctt
      181 gccatttggg aaatttattt aagttattaa aaaattccct aaaattctca gctgaaaagt
      241 tggcttctgt tttttctaca aagctaactc acctgatttg tcagaacagc tcgaaaatga
      301 agtgctaact ggtgggtttt attgaaagga aaccaagtgg aacaacatat gtattttctt
      361 aggaaactaa aaagctcaca gtcctgtggt gttccttggg gtaaattctt tgttatgaat
      421 tacaacctgc ttactgatga gttgttaata aaaagtagac ctgctgggcc attatttttt
      481 tccacacagt atacccagtt tagctttttt tttacgtttt cattaataca ctgagtgtga
      541 ataaatctgt ttccaatttg taattgtttt cctttcatct ggacattaat ttattgccaa
      601 atctaacact cttctatttt taatatccct ccaaactgaa gagctgtttt aaaaagaaag
      661 a
//
LOCUS       KCOD01003366             550 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 374312pyr ultra-conserved element
            locus uce-3099, sequence.
ACCESSION   KCOD01003366
VERSION     KCOD01003366.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 550)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 550)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..550
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="374312pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>550
                     /note="ultra-conserved element locus uce-3099"
BASE COUNT          132 a          116 c          141 g          161 t
ORIGIN      
        1 tcctaaataa ggctgctgtc ttgctgatct gtgcccagaa catgtgtaaa caaggtgtcc
       61 caatgtgtta tctgtcagtc cctgaatttc tatgtttgcc tcaggagagg ggaggagatg
      121 cttagtttga ccttgctttc tttgcacgtg cctctaattg atcttgaaaa gaagggacag
      181 ttaaagaaga cgttaaggtg aaatgaagcc ataactgtga ctggagactt ttattcaaag
      241 ttccctgggc tgtgtataaa ttgtttattg attttggtat ggctgggtgc tctggagtaa
      301 tcgcccacag aaccactaga gactgagtaa gagggctttg ccaggtctct gctgcttcct
      361 gcccctgttc ctcctgcctg tgctggtggt ctcctcttta acctgtaaat gagcagggat
      421 ggctccctcc tgcagcccag agtgggccta ctgttccaga aatggccagt gaaagaatat
      481 agtaggggaa gaagtacctt tggagcatat atcgtacaag gaactgagac ttaaactgcc
      541 ctttggctct
//
LOCUS       KCOD01003367             719 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 374420pyr ultra-conserved element
            locus uce-3573, sequence.
ACCESSION   KCOD01003367
VERSION     KCOD01003367.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 719)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 719)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..719
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="374420pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>719
                     /note="ultra-conserved element locus uce-3573"
BASE COUNT          246 a          111 c          123 g          239 t
ORIGIN      
        1 cccccaaaac aatctgaata atgaatcaaa tggtctcagc agtaattgga tctttttctg
       61 tgtaattagc aatttttccc cttgcattat aatttaaagt actgtggttg aattgagcaa
      121 ctcatgtaat gagtcattag accgaggctt ttaaggaagt tatttctgaa ggtctgtgga
      181 ggctaaaata tgtctaaatt aaaagagtga caggctgcaa tcacggctgt aaaataaagg
      241 tgctcagtaa gcagtcctat tacaatcaga aagaaaaaga agcagatctc tgtcttgtgc
      301 atggaagcag aggaaatgat gaatacctta ggtaactcat tctgtgcaaa atcaatcttt
      361 cactgtcaat tttaaatgaa ctaatttgtt cacaaatctg ctcagtcagt ttggaagcat
      421 actcagttca tccatattag caaatccttt aatcttgact agtccactga gtaagaaatc
      481 tagaaatgtg ttaatatgac tggacatatg tagtaggata agaattgatt cttttaatta
      541 gtgtctattc aagttatagt tccttctttt actgaactat tgacccactg atatataaag
      601 agattactgt tatgactaaa ataccttcca aagttatatt taactctttc tttattggtg
      661 aatgtgagac agaaaaataa tctttgagtt atctaaaaat aaacaatgta atctaattt
//
LOCUS       KCOD01003368             670 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 374529pyr ultra-conserved element
            locus uce-6478, sequence.
ACCESSION   KCOD01003368
VERSION     KCOD01003368.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 670)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 670)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..670
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="374529pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>670
                     /note="ultra-conserved element locus uce-6478"
BASE COUNT          175 a          166 c          137 g          192 t
ORIGIN      
        1 acttctcagg ttcttttccc ctttgcacaa tgtatgcagg gacaagaatg tgtaagtgcc
       61 actgccaccc cattcagact tttactgaat cggtgtaatt ggattttgca cctcaatttg
      121 caagatacag ttcccctgaa aaccaaccca ttttggtaag cataaaaata aaacgaaata
      181 aaaataataa taaagacagg gcaggcattc ataaggtacc aggtctccac agtcttcagc
      241 tgagagaccc cagatttcaa tgtaccctga aaagggtgat taatttaaag tgagtggagt
      301 ctgtttcttt aagacaagct cataaatcgt gaaagatcac cacttctttt caaaaggctc
      361 tccacggtct gagtttccct tctgggtcag taaaggcatt gaagttttaa tggcatgcca
      421 tggcagatta cacgatacag ctgtcccggc accgtgaaaa ttaagttatg ccccgtgtca
      481 gcaaggtttt tttccccttt tctttcccta ccctcccccc ttcactctcc ctctttcttt
      541 ctctttccct gtccccttct tcattctcct ttttgctggg aagtgcgcat ccaaggagga
      601 ggtgggagcc cggcaggagc tgctgccacc ccagctattg agactgagta aatggagctg
      661 atgggtgaag
//
LOCUS       KCOD01003369             833 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 374632pyr ultra-conserved element
            locus uce-2177, sequence.
ACCESSION   KCOD01003369
VERSION     KCOD01003369.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 833)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 833)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..833
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="374632pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>833
                     /note="ultra-conserved element locus uce-2177"
BASE COUNT          279 a          176 c          150 g          228 t
ORIGIN      
        1 gaagagcaaa tgtcttttag ggtttcaagc tcctgtataa gtttcttgtt ctgaacttct
       61 agcactgcaa cacgactctc cagacatttt atgtattctt tcttccgacg tcgacattct
      121 ttagcagctt ccctgcaaaa agcagaagta aaaagtgcaa acaaaaaagc catttgcatg
      181 ccattagaaa gctcagcaga gtatggagac tatgacagaa ttccaaattt tggaatatct
      241 cccaaatcag tctgaaaaca ctaagcaaaa ctgggttcca caagggcctc aagtgtctct
      301 ttctcaagtt catatggcaa tctgtagaat tgcttcctct catgccttga ttaaagttca
      361 taataaagga ggtccaaatg aaagacagtt attctgcttt atgacaataa agatctttga
      421 gggccttgag ttcctcaatg agagtcttgt tttggttttc aagcacagcc acacgatttt
      481 caagacattt gacatattct ttcttctttc tgcgacattc tctggcagct tccctggaac
      541 caatacaagg caaatgacta caggaacagc cacaatatgg caaagactgg ataaatgcaa
      601 ttacctacaa tccctgtaag gacaacacca ccaactgctg gattgcacaa acagagcatc
      661 ggataacagc catataatcc aaaataacta gaaccagcat caccaaatac aaagatggaa
      721 ccaatacaca gaagaactga gaaaaacaga gagtaaatga tagtgtattg acttgaattg
      781 tactaaacat taggagggaa agcagcattt cttcttccag tttgtgtgtt tat
//
LOCUS       KCOD01003370             498 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 374730pyr ultra-conserved element
            locus uce-767, sequence.
ACCESSION   KCOD01003370
VERSION     KCOD01003370.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 498)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 498)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..498
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="374730pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>498
                     /note="ultra-conserved element locus uce-767"
BASE COUNT          170 a          101 c           80 g          147 t
ORIGIN      
        1 cacacacaaa taaacgatgt tcactaactc cagctatata aatagtgtcg gcaagtattt
       61 tcattgccag atatgctcag aagattatta ttagtttgta ttaatagatg caggcctcaa
      121 aagacgaaat cagctattga taattgcaag aagtatacag cagctactgt atcgatcggc
      181 ttgtccctta ttcccctggt ataggagaga taagaagaca cactctttag tgcaatataa
      241 tttcttttga cctatctgct tgctacagac ttatgatgaa tagccagagt ggttaaagtc
      301 ctttatcacg aaagttaccc cttgatataa tattgattct ttataactag ctccaaacac
      361 aaaaatcaaa ctgtccactt gaccatcatc atcatcaata tcgtcacaaa ggctctggaa
      421 taaagatcag cacaggactg aaaacgcttt ctataatctg cccacctaat ctttatttgc
      481 tgatgatgaa aagaaaag
//
LOCUS       KCOD01003371             589 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 374839pyr ultra-conserved element
            locus uce-3512, sequence.
ACCESSION   KCOD01003371
VERSION     KCOD01003371.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 589)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 589)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..589
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="374839pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>589
                     /note="ultra-conserved element locus uce-3512"
BASE COUNT          191 a          119 c           88 g          191 t
ORIGIN      
        1 cagtttccta gcactcctct gaggggaaat aatgcttgga gtgcatatac ctttaagtat
       61 ttctaattga aaaacacaaa gcattgcgag aatcagttcc cggatttagg aaagaatgca
      121 acactgagat aatctcactt tcccatcatc atcctttcat tcttctctac tccctccgct
      181 cccgagacac aaggtgacat atccaagtac ttgtccttca acagattctt cagcaagcaa
      241 cagagcagaa agccctaata tctattcatt tgtaatctgt cattcttaaa gtattaagga
      301 caattgacgt cacatgtctc aggtaattag aatagtcagc ctttgctcca catttttaaa
      361 gtaagtgtct caaactctta atcagtacat ttattgatgt ctttcaacgt atctgtttct
      421 tgtcaagtgt gtgttattaa aaaatcttgc atactgaatt gtggaggaga attatattaa
      481 aaccctctct attgcttttg taattaaata aaatatatcg tggtattttc cacattcaga
      541 gtaatcaatc tcatggaaaa ctgctcaaaa gcaaattaat aaacataaa
//
LOCUS       KCOD01003372             742 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 374949pyr ultra-conserved element
            locus uce-6614, sequence.
ACCESSION   KCOD01003372
VERSION     KCOD01003372.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 742)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 742)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..742
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="374949pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>742
                     /note="ultra-conserved element locus uce-6614"
BASE COUNT          226 a          141 c          152 g          223 t
ORIGIN      
        1 ttctctgcac tatttatgat cttgcacttg cctcctgtag agctggcagg cagcctaaga
       61 tgtacaccaa attctgggga ggaagcaaca ccatttctgt atagtaccac tgtgagagct
      121 agtctgttgg accactttta tttcctcttt tgttcaaaaa tatgagagac acgagataca
      181 acaggaggag acgaaaaccc tcagtcttca gtttctctct ttctccttgc atctaatatt
      241 ccttttctag ccttgttctg gtatcagcta tttgaaatag ttatatataa tttaacatta
      301 tacaaaagta ttgtcatatc aaacatagtg aaacggattc caaaaacacc atctggtatt
      361 tgggaatgca ctgtgagttg ggaacgtgag aagagatatt ctttgccact ttgcttggga
      421 cccagccatt agcagtgtaa ttgccaagaa aaggtgacag gcttcaggct taatgcaagt
      481 ggttgggttt ttttctctct ctctctctcc cagtctgtta actctatgag tcctaaacta
      541 aatgcaaaag gcactgtaag gacaacacca ggctccctta aatttaaagg catggcagaa
      601 aatgaaaaca gtccctataa gaagactgga ataagtgaaa gcaaaataag cttgttgaga
      661 ggaggaaaga aaacaagaca tgtatgtttt aaagctgcag tgtgctacat ggaattgttc
      721 tcttaagtag tggatttgta at
//
LOCUS       KCOD01003373             818 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 375057pyr ultra-conserved element
            locus uce-7799, sequence.
ACCESSION   KCOD01003373
VERSION     KCOD01003373.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 818)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 818)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..818
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="375057pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>818
                     /note="ultra-conserved element locus uce-7799"
BASE COUNT          231 a          149 c          169 g          269 t
ORIGIN      
        1 gtcttgctgt ggcttttgat gccagtgtac atgccagtat tgctcaaagc attccatatt
       61 aatcacactg ctttacacaa ggctgaaaat atccagagca ttttcatact ttatatttct
      121 gtctgaaaag taagaaagaa aagacaaatc aaccctttat gggtttagtt gttgcctttt
      181 aactacttag tagctgtatt taatagctag gaacccctgg ttaaacttgt gctcacattg
      241 cccttctggc atagtcctat taaatccata tgaagccaga tatgattatg tgcagatgtg
      301 gtgtgcttca ctgtatggga ctgggccaaa gaccttagat gtggtgtatc acatggtgac
      361 ttacattatg aatggatgta ctatacgaaa gttgctgctc cttatttatt gcggtgtgct
      421 gcatggaaca tatttatttg aaagcattaa aataaacgat cctaaagcat gtgcataatg
      481 agagaactgc attgtctgtg tgctgctgta gaggttacat taaagtccac ataacaatta
      541 cagtacatca gttgtgctta agatgctata aaggttggct tgagtggatg gaatgagttc
      601 cctttccaag atgcctatta tttctaggca ctttaactat atttcagata cagttggtca
      661 ctgatacttg tcatgcaagt taacactaac agtctgacaa agggttgtgg ttctcaagta
      721 tgacaccagt attgccaata aaatgtatca ggcctgtttt gcagtgtggt tgatctttcc
      781 ttgccaacag tgctcttcat taccagaaat gtggctgc
//
LOCUS       KCOD01003374             633 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 375168pyr ultra-conserved element
            locus uce-2592, sequence.
ACCESSION   KCOD01003374
VERSION     KCOD01003374.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 633)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 633)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="375168pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>633
                     /note="ultra-conserved element locus uce-2592"
BASE COUNT          174 a          137 c          150 g          172 t
ORIGIN      
        1 catagtgtgt ttattacaga tttgacaaag tgaaacagtg ctgtgctttt ccaggtggtg
       61 atgagtgttc tgcagaactg cctcagtcac tcgcgtgttg gagattctgt ggtagcaaat
      121 gcacatggac tttaaagtgc agaccgctaa acataaaagc tagcccaggc tataccttcc
      181 ctccacgcat ttggcacctt ttccagataa gttacagaat tccattatcc aaattgttac
      241 acatgtgtga cagaggttga cctttagtca tgtcaatcct ttttgcgtag gcctcgggct
      301 ccagcctaat ggctcaaagc ctgatttact cactgtaata agggcaggag gtcgagcaat
      361 tgtcagcttg cctgctcata ctcgtctcgg agcctggttg aaggctgtta acacaaagct
      421 tttcaaagtg aatttacaac caccaccact gacataggcc aatcagtaca ccataaatgt
      481 caggttagtg agattgagca gtaagtaaag cactgccagc ccactattgg ctgaaatcaa
      541 ttgcttaggg tttaactgag aatagcaatc cgtgtatgac tacatctgca gaaccagctt
      601 gagggcagag agtgagttgg agggtggtta agg
//
LOCUS       KCOD01003375             445 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 375272pyr ultra-conserved element
            locus uce-4061, sequence.
ACCESSION   KCOD01003375
VERSION     KCOD01003375.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 445)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 445)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..445
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="375272pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>445
                     /note="ultra-conserved element locus uce-4061"
BASE COUNT          107 a           99 c           94 g          145 t
ORIGIN      
        1 gggcacgtaa ctgccagcgt tttacaagaa agtacagcga ttatattatc tcatgtgcgt
       61 tgttaattta accctcagta atcttatttc acctcaccac cattgcagtc tacagcttaa
      121 accagctgtt gaaaataacc tagtttaaag agttcacggc aacgtgaggg attcatcatt
      181 atatatttac tgtctgaggc tgatatagct gtaaggtttt tcagatgcca ttgatctatt
      241 gcgcatgttc cctccctggg ttgcaggacg tgcttctatt tgcataaggc cctgggcaag
      301 gttctttctc gcattgattg gcctgtccaa gggagcctga tgtgctcctg cattgatcac
      361 cctgtctttt cttggaaggc agtgttgagt tcatctcaaa cggaaaactc tactgtcgca
      421 attttattca gatataggcc tttcg
//
LOCUS       KCOD01003376             503 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 375377pyr ultra-conserved element
            locus uce-2379, sequence.
ACCESSION   KCOD01003376
VERSION     KCOD01003376.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 503)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 503)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..503
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="375377pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>503
                     /note="ultra-conserved element locus uce-2379"
BASE COUNT          152 a           88 c           90 g          173 t
ORIGIN      
        1 atctcactta tggccaaatc aaaggaaaaa ctgttaagtc aattctacct aagtcaacct
       61 cagtggccaa actggcacag aatactaact aaaccaagtc taacttttca ctgcatacta
      121 tgtgcctgta atttaaaagc actctgtaga gggctgatga aactgaactg tgtgcactct
      181 gatctcgtgt gttagttgag tgcttattca gacagcacaa acaagtgcag agagtgcatt
      241 tcctagcctt aatatgggag gggtagtttc ctgtagttca taggctttta ttattgtgca
      301 taaatgttag aaaacatcat ttactaatca attttatgta tttgaatatt ggcaattggt
      361 gttttttcat ctgtacctta gactccagtg tcatgcttac tcattagaga tttcattaaa
      421 atttaaaaaa agaacttctg ccatagtttt gtttctttac gtaatctgca tttggtatta
      481 gtgcttgcaa tggtattaaa atc
//
LOCUS       KCOD01003377             326 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 375484pyr ultra-conserved element
            locus uce-7015, sequence.
ACCESSION   KCOD01003377
VERSION     KCOD01003377.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 326)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 326)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..326
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="375484pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>326
                     /note="ultra-conserved element locus uce-7015"
BASE COUNT          123 a           46 c           60 g           97 t
ORIGIN      
        1 gtgcagaaac ataaaaaaat aaactggata aggaaacgga tgaatataat gaccttcctt
       61 actctcaatc atatgctgcc agataagtgt ttgagtctga aaaattgcac taatgaagct
      121 atttgaaggc ttttgtggac aactgcttac tctttgaaga ttaaatgaat gatgttgatg
      181 tgattaatct tagtacaggg agtgatgcag cagccagaaa ataccttggt gattttcata
      241 attaaactga atcaacattt caaagaaatg ccagtgttat cacttgtata ttagaattac
      301 attcattaga cagaagaaac aaataa
//
LOCUS       KCOD01003378             591 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 375589pyr ultra-conserved element
            locus uce-3852, sequence.
ACCESSION   KCOD01003378
VERSION     KCOD01003378.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 591)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 591)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..591
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="375589pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>591
                     /note="ultra-conserved element locus uce-3852"
BASE COUNT          197 a          123 c          138 g          133 t
ORIGIN      
        1 ttgtcaagaa taatagttaa gaatataact gtgggattta agctatttaa aaagacaaaa
       61 actaaagctg aaatgaaata ataaaaaaag ttttcaaata ccaatgagtc aaaatgtttc
      121 agaatctgaa tcattttcat tgtacccatc ctctgttcct atgttattac tcaagggctt
      181 attgtaagag ttaatgctac ccatagtgga gccatcgcag aggtgtgtcc tgcccaaatt
      241 gtctttttta aaacaagcga agttgaaagc cgtcactgaa ctggagggag aaaaaggcat
      301 catggtagcc aaaatgagtg ccaggcagtc agccacgtct ttgttaggag cacaagccag
      361 ggctggcgta tgacctgggc acaaatgcag acaaggcaat ggttagtact gagggcaccc
      421 agggcaccca gcattcctca ggtacatctc taggtgggga gatgtatggg acatgctggg
      481 agatacacgc tgactgcagt caccgggacc acaacaagca ctgaaaccag gcagcaaaca
      541 gactgcacca gtggaatcaa agcactacag ttctacagca cagacagcac g
//
LOCUS       KCOD01003379             568 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 375696pyr ultra-conserved element
            locus uce-7599, sequence.
ACCESSION   KCOD01003379
VERSION     KCOD01003379.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 568)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 568)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="375696pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>568
                     /note="ultra-conserved element locus uce-7599"
BASE COUNT          177 a          104 c           96 g          191 t
ORIGIN      
        1 tttcataagc tgtactcaaa gcagtctgac tatgagacct aactcgtgac acgtgtcagc
       61 ttcagaaaag actcaaacaa aacttctcac attaaaaaaa attgtatttg aagtcctttt
      121 tcacccaaac acataagagc acacaagtct tgacattatt tcattttgtt atgcgcatct
      181 gtcaaggaac agagatatga tacagctgct aaaaactgat gattgtggaa cagtgaaact
      241 tgacagcatt tcatttcctt tatgttctga ttatacattt atcaggaaac ctgtatctct
      301 tctagttgag ctagaaattg gtagaattca ggaactcaaa ggcttggaaa agaactgtcc
      361 tattatttgg tatcatctta cgttttagag aagttgcttg gttgagtcat tgttaaagct
      421 tttgcttctt ctttcattat tgtgattcac tatccagaga tcacatttct ataggcccta
      481 taactgctct gcagcacaaa ttaaacgctg gggtatttca tacatatact tcgaagtttc
      541 aatggttgtc aatcatagtt tgtaaaat
//
LOCUS       KCOD01003380             749 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 375805pyr ultra-conserved element
            locus uce-1961, sequence.
ACCESSION   KCOD01003380
VERSION     KCOD01003380.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 749)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 749)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..749
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="375805pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>749
                     /note="ultra-conserved element locus uce-1961"
BASE COUNT          263 a          120 c          143 g          223 t
ORIGIN      
        1 agaataacac cgtttaatca aaatagggga atataaatct acatagaaga attctacact
       61 gacagaattt aagtaggaga aactgagctt tgctttcaag acagcagtta gacatttgag
      121 agctctatca aagtaagtaa ccacgtctca aatactgttt catcatttat agtttttatc
      181 acatcatata gcataacttt cacatgagaa caaaggtcat tttaaggcaa actgttgttc
      241 taaggtaact tttaatttga ggactaaatg taaattgcta tggtgaatgc acgttaggtc
      301 actaaaacaa cggtagctaa actcagatgt gacctagcaa cccaggtgtt caggaaaagt
      361 gctgttaaca gtaaggattg atgatctaat caaactgtca cactcagatc ctcagcaggg
      421 tggttggagg ggaggtggag gaggataata ttcagaaagc aagcacatgc ttagtgttac
      481 tttaaattga tgctgacatt ttcaattgta aaaagaaatt ttttcctaag taatatagga
      541 aacaactctc ctaaccttcc ggaggatatc agataatcag agagcttgtt ttgcaaaagc
      601 caacttctca gatgtgtgac tttatgaaat acgaactatc agaagagatt caagatgata
      661 gcaagtattt taatgctttt cttttacttc gataggcata aatcagtgtt tagctaactc
      721 tgtacaaatg tacttgtacc ataaagtaa
//
LOCUS       KCOD01003381             723 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 375915pyr ultra-conserved element
            locus uce-6241, sequence.
ACCESSION   KCOD01003381
VERSION     KCOD01003381.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 723)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 723)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..723
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="375915pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>723
                     /note="ultra-conserved element locus uce-6241"
BASE COUNT          237 a          133 c          113 g          240 t
ORIGIN      
        1 atttgcaaac ttcacatggt ttatctacat taatacagct ttcactaaca ggacttacag
       61 gaatagatgt atacactaaa gatgcacatt tttagtacct tgaattatca taaaaacata
      121 aaaatagtgc gtattgctct agtctaatca gactcatttt tatgtggttg ttgaaagccc
      181 ttttacattc cattctgtgt ctggaggtct gtataaaact gattgagaaa aaccaaagtg
      241 aagacacctg ctggcttata acacaaatac taaaatatct tagagcctgc tgaaaggaga
      301 attggaacaa tatgtcatta ctgaaggctc acttgcaagt tctaatgtat tataatgaaa
      361 acagtatgac aaacctaatg agacagtgaa gatttgggta attgttcctg caatgtatgg
      421 taacttttcc agccgttatt ggcaaacata aaacctaatg agattttatt aatttaaatg
      481 cagtacatct gcaaaacatt tccttagttg cagtctcctc tgctaatctc ccttcccaca
      541 cgtacttgat ccttttaagt taattgttct gcatagtaca ctttctaaac aaaacataca
      601 aagcacttac cataaatgtg cattaactta ttttgccacg gcttactttt tgtgggtaca
      661 cttccacatt ggttggatag aatacagctt ctttcctctc tgtgaaaatt tgtataatga
      721 aat
//
LOCUS       KCOD01003382             575 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 376027pyr ultra-conserved element
            locus uce-3371, sequence.
ACCESSION   KCOD01003382
VERSION     KCOD01003382.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 575)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 575)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..575
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="376027pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>575
                     /note="ultra-conserved element locus uce-3371"
BASE COUNT          129 a          149 c          118 g          179 t
ORIGIN      
        1 aagaatggat ttcagttgtc cttgaacgac actggcatcc ctcgatgcct agaaatgcta
       61 taaacatttt ctctctaaaa acagctagga gagtccataa aactgcgtgg agcatcagct
      121 attaggggct cattgaataa ttcatccctc attgcaagcc cataatgtct tttctcagcc
      181 ttttgtgggg ctgttttctc ttcttttctc cttgaattat aaaaaggttg ccttcttttg
      241 ttcacatcaa gctgctgcta gctgaagctt tgtctgtgca aagccaaagt gtgagtttca
      301 atggactccc ccctctttgt tttccaagtt catctccaag tgtagattgt gtatagaagg
      361 ccttctttgt aaaagctgga aaagttgtac aaatgtttga ccagctcatt tggtactttt
      421 gtctcgcctt ctccagtgcc tgtgcatgtg ctgggcagca acttccacac gcatgcctgc
      481 ccctgcaccc tgatggcttc aggcagcagc tgtgcagcag cccttcacct ccgccttgtt
      541 caggttgcaa cctcctcgca gtccctggcc aaaga
//
LOCUS       KCOD01003383             585 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 376136pyr ultra-conserved element
            locus uce-4106, sequence.
ACCESSION   KCOD01003383
VERSION     KCOD01003383.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 585)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 585)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..585
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="376136pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>585
                     /note="ultra-conserved element locus uce-4106"
BASE COUNT          196 a          120 c           93 g          176 t
ORIGIN      
        1 tggttttgca aaatcctaaa tttaaaggaa aggaaaatca aatatctagc agcaaatgta
       61 cctcatgtga taatcaatta cctaatgtaa aatgcttgaa ataaatgctc ttactatgga
      121 ttaagtcagc tcttcaatta ggagtaaatt cacggccact cagaaagctt cttttaattg
      181 tgttctttgt ggcaactcct tctctcctga cacttatcat caacccacct tatacaatca
      241 gtcccccaat ggtgaacctg agaaatcaat ctgctaatgt ataatttgta aagctccaca
      301 gactaacaaa tggataattg attctttcac aaatgctgca tcccaatgga tatgaagtgg
      361 atgaacataa gactggccaa ttctgtgaga aatgcagtat ttacaagcta ggaatctaaa
      421 cgttttaata gttgtctgtg acttcatgcc ttttagccat ggttaccagg caagctacat
      481 gcacattagg agtgtgaaaa gcaaagcaat catacttcaa agctcatttt acttcaagag
      541 gttcccatca cttctaaaac ccccttttca agaattttca gaaac
//
LOCUS       KCOD01003384             643 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 376244pyr ultra-conserved element
            locus uce-3570, sequence.
ACCESSION   KCOD01003384
VERSION     KCOD01003384.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 643)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 643)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="376244pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>643
                     /note="ultra-conserved element locus uce-3570"
BASE COUNT          199 a          135 c          106 g          203 t
ORIGIN      
        1 attaatacca acttaaagct aaacattgaa ataagaacat cacagttgtg ctctccgacc
       61 cgcaagtatc actttccaaa gcagaaacat tcacaatgca ctagcattag tggaaacttc
      121 tgtaagtggg gagggtggga cttgatgtgc acaaatattt ccaagccagt tacccctttg
      181 catatttttc tgagggggca tccataagta taataaaaaa cagaaactca tacttacatc
      241 ctattccatg ttactttcca agctgtgagt ttcatcttgc attagtcacc atatgatctc
      301 tatcataatg gtgggggtca atgaatagat tagctttatg ggaatttaca gttcttccat
      361 gcatctaaag tttggtaagt ctggtaacca ctgacctagt tttaatcttc ccccactctt
      421 acgtttcatc tcttcaaaaa tcttggataa tgttacaaat ctacctaaac acactcaagt
      481 gtatgtctta tactgcagcc ccatttagcc ttcacttata attatcttga cttaatgtat
      541 gtgtagcaac ttaagctgcc ttttttcatg ctgaagtgag aagactgaaa aatactcagt
      601 agcaatcaat gtcttagcat aaagatgtca gggccacttt aac
//
LOCUS       KCOD01003385             718 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 376358pyr ultra-conserved element
            locus uce-261, sequence.
ACCESSION   KCOD01003385
VERSION     KCOD01003385.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 718)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="376358pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>718
                     /note="ultra-conserved element locus uce-261"
BASE COUNT          238 a          160 c          111 g          209 t
ORIGIN      
        1 tttctcctgc aaatgcaatt gcacttatca tatattacca ccaatgttca ataatgcctg
       61 acttttatgc caattactct ccttctaatc aaagttaaat aaaaccgcat cttcatacct
      121 cctctggcta aaagtattca gaaacctata aaagcagctt gcagctaata ttgcacactg
      181 tgtctaggtc tgtcacacaa aagaaagatg acaagttcac tgcaataaaa attccatgct
      241 tagaagacta gagctgctac ctattagtct tcattacttt gcagtcttct gacaactgta
      301 gcaggctgct gagccccaaa tgggggccat aatgtgatct gatgatatat gaagagctgc
      361 taaagggaga gtgaaccatc ctagcctata cattttaaca gttccttttt actgagaacc
      421 cactttacca caagacttca aaaatctgct gcctcagcta ttggtgcagt aaatctgcca
      481 actgtgcctg caaccacatc attttacact ggctacagca gccaatataa tgagtcaata
      541 ataaaccaag gaccttatag gccatgaata gctagtttat actggcagat gcaagcataa
      601 ctaaaacctc tgaccaaaca aaaaacacaa aggactattt ctgtgcttcc ttgcagttaa
      661 ttatcttagt gcatatttaa tgtgttttct aaaaataaag taattcttaa ttgccaaa
//
LOCUS       KCOD01003386             455 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 376469pyr ultra-conserved element
            locus uce-6333, sequence.
ACCESSION   KCOD01003386
VERSION     KCOD01003386.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 455)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 455)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..455
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="376469pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>455
                     /note="ultra-conserved element locus uce-6333"
BASE COUNT          111 a          117 c           88 g          139 t
ORIGIN      
        1 gggcttggtt gaggattttt gtgagatatc accgggatca ccttccctct acagcaaaac
       61 atctgcactt gctattccag atacagacac ccaggagagc ataaatttcc ctgaatagat
      121 gtattgtttt accatttatt tcctcacctc ctcagctcat ctgaatttcc aatatattag
      181 ctggtgtgtg cacggttccc cttcactaca ccggagcaga ttagtgctcg ttcgcctctt
      241 tccttgcttc tcttcagatc gttacacatg acaaaacaac tgtcctaatt acagcaagtg
      301 ttcccagctc tgtcaccgtg acaattactg caatgagggc tcaatatctg cagcagacag
      361 taaagtatta ctgcagttgt gtttgatagt gctcaattgt cccccggagg attctccgtg
      421 ctctgcccat ttgctaacag ggttcaaaag ttgac
//
LOCUS       KCOD01003387             764 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 376578pyr ultra-conserved element
            locus uce-4693, sequence.
ACCESSION   KCOD01003387
VERSION     KCOD01003387.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 764)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 764)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..764
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="376578pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>764
                     /note="ultra-conserved element locus uce-4693"
BASE COUNT          159 a          153 c          208 g          244 t
ORIGIN      
        1 catctgttac aggcttgcgg aactgtggct gtttgaaatt aaacgtgatc tttactgtac
       61 cagctggggt ctgtaatgta tctgataaat gaagtcttgc cgtcggtttc aggtcatgca
      121 aggaaaaggg caaaactggg gagggagctg ggcggggccc tttgcttttc acagtcaggc
      181 gagaggagtc tcgttgatgt ctgcagcaga taaaggagac gaggatcatc aaaagacccc
      241 agagcccttt tatctttttc cctttaattt tatttgtcgc tgctgtgttg tctgcctgct
      301 tgtttccccc gaaggggtcg ggagcaccag ggccctggct gaggtagtag tttgtgctgt
      361 tggtcgggtt gtgacattgc ccgctgtgga gataactgcg caagctactg ccttgctagt
      421 gctggtgatg atcagctgca gatgaagaca atgacaatgg gaatcccctt tgttttctcg
      481 ggattgcatg ctgctgaggt ggcaacaatt ccttctcctc ctagttctgc aggaggaatc
      541 tagccttggc cacgacccca tcattaggat gctccttctt agagctggat tttcatgctg
      601 ttttacctga atttgggctg aagagctgcc tttcttctta tgcttagacc ttattattca
      661 aagaggtgga ttttctattt tgtgaagatg gcagtgacag acttgtattt ttgtgttctg
      721 aatatgcaaa acttgtatgt gtgatgtgct tttgtctgaa tggt
//
LOCUS       KCOD01003388             718 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 376690pyr ultra-conserved element
            locus uce-6937, sequence.
ACCESSION   KCOD01003388
VERSION     KCOD01003388.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 718)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="376690pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>718
                     /note="ultra-conserved element locus uce-6937"
BASE COUNT          247 a          139 c          138 g          194 t
ORIGIN      
        1 gatttgacat gtgcaagcat acctacgtga acagacacgc aaagctggca ggttagaaac
       61 aaagctattt ggaatttgtc ctaaatcatt gacaaacctc cttaagaagt tgccaggaag
      121 gcaagtaagc taatcagtcc actgctagta ttaagtctaa aacaatctcc agctgaaatg
      181 tgattaatcc atgcatgaca gcttaaaggt caaagctaga atgcagagct tcttgactgc
      241 aaagaaagaa ctgacttatt tttatctctt ctttaaaaat tacagcagcc atgaagtggc
      301 tcaaggagca gagtaatgaa cgtcataaac ctgcctcata aaaatggcat tcatgcagta
      361 atacagcagg tcagatgagc agggaacatt tcattaaaaa ttcctcttct tgcctaccca
      421 agagagactt aaaactaatc atataaaatg gctgagtgac accattaacg agcattaata
      481 ttttaaagct ttaatagtac aacagagcta ggctgttaca tcaaaattat acaaccttat
      541 tagacagtgc acttggctgc attgtacttg aactgtcact atgattggaa atattaaggt
      601 ggccacacaa ataccttgtt gtctgtccat acggtttggt agatgtgcca aattctggag
      661 gattttgtga agaacaagct gatttacctt acccatacca aaggagggag acctttac
//
LOCUS       KCOD01003389             809 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 376798pyr ultra-conserved element
            locus uce-7529, sequence.
ACCESSION   KCOD01003389
VERSION     KCOD01003389.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 809)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 809)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..809
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="376798pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>809
                     /note="ultra-conserved element locus uce-7529"
BASE COUNT          232 a          170 c          162 g          245 t
ORIGIN      
        1 aatttctaaa gttcctatgt agacagtaat taatttaaat aacttttaga tgctaatatt
       61 caccttagaa aacaaattga tttgtttgtg tgtgggtgtt cttgagggct acacacgcac
      121 agaagtcatt tgtcagtctc taataagaaa cagaagtgac atctgtcatg cattccagta
      181 aacatattaa gcaaacacaa taggacccca aaatgtttac tcaagtactc taattaattg
      241 tgacttgctg gaacagagtt ttctatgaat taaacacaaa gatccatgct ctctcctccc
      301 ccttgctgta gctttttgtg cagtgggaaa agatttaaac taaagacttc ccttctggct
      361 ctgccaaggt gcattttttc ctcatagact tgacttgcag tagaagttga tgtaagagtt
      421 tgtcatggct gttttgacag tccggtcatc ctaatccagg gatctggtcc ctgtggtttg
      481 tcaattatcc tactaaccct acagcgagag gaacactcaa ggcactgaac tgtcatccaa
      541 taaccaagaa ataatgtcag cagccagtga gtaggggggg atgattttga caacagagaa
      601 gtgtggatca tttcagcatt tattttattt ataggcattc gtaacaaatt aattacatct
      661 cactccgagg cttccctaaa acttgctgga tccagacctg cctgcaggat gatgagcaga
      721 actgattgca gcacggcaga tccaggcgtg gaagttcgat tcccagtttc gttcactccc
      781 ctcctgtgac cttgagcttg ttacttgac
//
LOCUS       KCOD01003390             486 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 376904pyr ultra-conserved element
            locus uce-2915, sequence.
ACCESSION   KCOD01003390
VERSION     KCOD01003390.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 486)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 486)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..486
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="376904pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>486
                     /note="ultra-conserved element locus uce-2915"
BASE COUNT          159 a           86 c           70 g          171 t
ORIGIN      
        1 gtattatatt attccatgat catttaattt tactttttga tcgaaaattt ttaaaattac
       61 atgtatctta cgttcagttt gctgatcaat ttaacctgtt tgaacacaaa cataactact
      121 gcagtttcaa acttttaaag ccgataaaaa tgataaaatg acaacacagt tagtcttcag
      181 aagtgatggg ttcctgggtt gctaatccgg aatacgtaca ctttcgtgcc tttgtctcca
      241 tcagcagttc tgacttcaag cagcagaata gaagcctaga aaattatctc tttaccatta
      301 gtaacacttt ggaaagatat ttataatcaa aacattacct tgtgtaagct gttaaatcct
      361 acttgttatc tgactataaa taactaatac ctaagtaatg tttaaattgt aaagacccat
      421 ttatgtttga caaatctgga catgtctcac agaccttcta gtgtcatatt gtaacagggc
      481 ttcatt
//
LOCUS       KCOD01003391             628 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 377015pyr ultra-conserved element
            locus uce-6663, sequence.
ACCESSION   KCOD01003391
VERSION     KCOD01003391.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 628)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 628)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..628
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="377015pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>628
                     /note="ultra-conserved element locus uce-6663"
BASE COUNT          207 a          127 c          129 g          165 t
ORIGIN      
        1 gtaattgcct ttcaaagcag aaccaaacat tctgttttgt atcagtcaat gtctagctga
       61 gatattttaa agttcacttt taaatgatgt aatgaacttt aaaaacagta gaaagcaaag
      121 catcgtgcta gacagttaag aaagagttaa tggaaaatga actacatata tcactttgac
      181 aagaatctac atgcccaatc tgttcttact gaactacaag caaaaggcat ctgggttttg
      241 tccacttaaa gctttttgca aattgaaagg agtttggagt gggtgggagg gcataattga
      301 ggtcactgaa cccattccaa gccgtgtcat tgaaatttcc cagtgcttgt agtatgtaga
      361 agggtggctg ggcaaacaca ggcaagagaa agttgcaata cttcagtggg cagtgactat
      421 caggtaccac tagatcttca acttcataac aaagaacccc tccctcgctg ccactgtttc
      481 gcgttactca cgtatgcaca tgcacacacc gtacacatgc catactcaca aacacatcca
      541 tacaagagat aaaaggcaag ggaaactttg ctttgatcca cagaacggaa tggatgtaag
      601 gatgccaatt tagcacgtca gtttgaac
//
LOCUS       KCOD01003392             873 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 377122pyr ultra-conserved element
            locus uce-1908, sequence.
ACCESSION   KCOD01003392
VERSION     KCOD01003392.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 873)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 873)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..873
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="377122pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>873
                     /note="ultra-conserved element locus uce-1908"
BASE COUNT          257 a          154 c          191 g          271 t
ORIGIN      
        1 cagactgggt gcaagaatta ctgtagctgg tgccatgcct tcacagggac tttctgttgt
       61 ctggggtgag ggggtagaaa agtcagaaaa tagggtcgtt aagaaaaact ctgtgtaagc
      121 tgaagcccta ataggatttg cataccattt tatggagaaa tggtgaaggg gcctgcaagt
      181 ttggtccctc taagcttcct gttttaacta taaacttgtc atcctataac ctttctaaca
      241 aagacataaa cacttcagct acatatattt tgattgtttc atgacagttt actggagtct
      301 tagcaatgac agatttcttc attgtctttt tgccaaaatt tgtcctttaa gtcatttttg
      361 ttgactgccc cttttagcag ctcacctcac aatgagagag gagacaatta atgggagggt
      421 gatttatcac tgccaaaaac tgtcaaggac ttctgttgta gctggagaaa aagcaatttc
      481 acattatggc atttcattcc gaatacattg tatttacagc tcacagtttt attttcagag
      541 cctattatca ggtgaaacag ttgcatctga aatgttgttt gtgacatagg tgacctgtta
      601 ggatttgata agtatttacg ccagagcaca aggggctcac acatctgctg ttggcagaag
      661 caatggaaaa aaataacctg gaaatgaggc gtttgatttt tctggttcct acactcgagc
      721 atctgttgct ataattaagt ggcattcagt aattgcagag caatggtgaa ataaacatat
      781 gcattcttgc cagcttttag gatttggtgt ccttacagta ggagagacaa gcaaagtgac
      841 ttcagcaaga acaaaaggtt ctgtaacaaa gtt
//
LOCUS       KCOD01003393             292 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 377232pyr ultra-conserved element
            locus uce-4414, sequence.
ACCESSION   KCOD01003393
VERSION     KCOD01003393.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 292)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 292)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..292
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="377232pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>292
                     /note="ultra-conserved element locus uce-4414"
BASE COUNT           77 a           68 c           80 g           67 t
ORIGIN      
        1 gagggagaga gagaggagaa agatttcatt acattcagca cagtatgaga ctaagtcaaa
       61 gtagttttgc taattaaatt caattgctat ccattagacc aatggaatga gatgaatcta
      121 ccatatagct gacacagcac aggtatgcaa tttggctaaa tggccatttc ggagatgcag
      181 cacgccttcc tcggctcgct cgcgtttcca ggctcaccat ttctgcgtgg agcggagacg
      241 cctctcgggg agcacggccg tgttgggata cgcaggctca gggcccgggc cc
//
LOCUS       KCOD01003394             732 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 377337pyr ultra-conserved element
            locus uce-1123, sequence.
ACCESSION   KCOD01003394
VERSION     KCOD01003394.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 732)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 732)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..732
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="377337pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>732
                     /note="ultra-conserved element locus uce-1123"
BASE COUNT          225 a          160 c          145 g          202 t
ORIGIN      
        1 gatactcagt tgtgctcaat atttagttct gttatgtgca ttatcctgct gaatgatcaa
       61 attaaatgca aactagaatt tgaatgtctg caaacattgg caagaatctg cagctaattt
      121 tagatggaag atttgcagtg tctgttgttt ttcctgttca ttttagatgg gtaaattgta
      181 aaaacgttga ggaatctgac ctgctttttg tctaggtttg caaggcatgc caggggacta
      241 cgtatctcag ggtggtccta tgggtatgag tatggcacag ccaagttaca ctcctcccca
      301 gatgacccca cacccaactc aattaagaca tggaccccca atccattcat atttgccaag
      361 tcacccccac cacccagcca tgatgatgca cggaggaccc cctacccacc ctggaatgac
      421 catgtcagca cagagcccca caatgttaaa ttctgtagac cccagtgttg gtggacaggt
      481 tatggacatt catgcccaat agtataaggg aactcaaggg gcaaacagaa actattttaa
      541 gacttttgaa ctttgaccag atgttgacac ttaatacgaa attccagaca gctgtgatta
      601 ttttttactt tttgtcattt ttcatcaaca acagaggacc aatgaaacaa gaacacaaat
      661 gtgaaatcat gggctcactg aaatgaatat gtccatgtac agatcctctg gaaaaaaaaa
      721 agactccaag ag
//
LOCUS       KCOD01003395             887 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 377448pyr ultra-conserved element
            locus uce-4964, sequence.
ACCESSION   KCOD01003395
VERSION     KCOD01003395.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 887)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 887)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..887
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="377448pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>887
                     /note="ultra-conserved element locus uce-4964"
BASE COUNT          301 a          165 c          148 g          273 t
ORIGIN      
        1 aaataataat aaaaatcaat aactattatt cagtattcat ttgatatttc acaatggacc
       61 actgtgaatt tgaactccag gaaaggttgc tgtttcaagc cttcaaaagg ttattatata
      121 cagcatagag aaataataat ttaaaaacac gtattttctt ttgaaaccta actaaagatg
      181 ttaaaagact gaaacaaatt aattaaaatt accaacttaa taatggcact gataacaaaa
      241 cagacataga cagagtctag ttacaacagg taatagatgc aggaaagact atccattaat
      301 accatgggct caaagcaaca cgcctcactt ttaggaaaca taccagcaga aataactagt
      361 gtattatcct gtggttgctt agagatgact taacgagttc ctgagaacag gccattagct
      421 agcatttgct tttgctatta aagctggata ctgttttcac cccttctctt gtctcccgca
      481 gctcagcacc tgtctttgtt tgggagtgac atctatttct ttttttccac caggaattca
      541 gtgcattttt aggcttgagt ggcttaggag caaaccagct gtgaaattgt ttcttgagat
      601 actgccctct tcataacatt tgtgcaagac cttaataaaa gaaatggcct gttgccctcc
      661 ctgtccctgg ccaattgcac ccatgaaata tatttcagta atgcaatttt ttggggctgt
      721 tgaaacaatt gccgctataa ctgtaaaaca cagctagatt gcttctaaac tactttcaaa
      781 aagtaagtgc tcacaaaaga gtcagttctg aatctacttt tatccttaga agacagagga
      841 aagtcatatt gagtaaaaaa ataatttcaa gactgtataa tttatag
//
LOCUS       KCOD01003396             479 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 377560pyr ultra-conserved element
            locus uce-3260, sequence.
ACCESSION   KCOD01003396
VERSION     KCOD01003396.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 479)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 479)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..479
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="377560pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>479
                     /note="ultra-conserved element locus uce-3260"
BASE COUNT          158 a          110 c           91 g          120 t
ORIGIN      
        1 tttagcaaat cgagcttttc agataaggta aaattagaag atctggcctt cccaaccatt
       61 gttatctttg aattaaggaa gccgttcctg gagccaccat gcagtcccta gctctgctca
      121 gctctttttc acaaacagaa aaagatcagg cttaactagg ctagtctcat ttaggcccac
      181 gcctacaagg gagggtttat taaaattcct tcagcttaag ctgacgcagg ttcaggaaat
      241 ctgcttaagc caagcctgac ctacataagg cttcagactg aagaaggcga gaagaaacaa
      301 gcaaaataca cttttgtatg aagagaccag acatacgcag gatttaaaaa cataaaggtt
      361 taaagattag cacgttaccc agctaaaaat tacctaattt agctggagta acaagctctg
      421 acacatctcc ccagctccct cacacaatct caaactgaaa ccgtgctgga gatgatttt
//
LOCUS       KCOD01003397             380 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 377668pyr ultra-conserved element
            locus uce-6009, sequence.
ACCESSION   KCOD01003397
VERSION     KCOD01003397.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 380)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 380)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..380
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="377668pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>380
                     /note="ultra-conserved element locus uce-6009"
BASE COUNT          133 a           77 c           81 g           89 t
ORIGIN      
        1 aaagggcagg tgtacctata cttcagggct gctctgtgac tgacctagtt tctacgctct
       61 ttaaaggcta tttaaactaa aaaaggtaac acattcctac ttctttctga aaaatccaca
      121 gaatagaata ttggctgaaa agagaagagc ccagaagaaa aaggagtaca aaagcatgac
      181 tgcttgtctg tgttcaacac aaagaacatt aaatgaaaac aactggcacg ctgccaaatt
      241 cctatacagg caaagagatt caaataaatt gatttcacgc atcacactga cctgggatca
      301 gtgagcagtg gtacaataca cttgctgctc catgtggggc aaagcccatt aatgttatca
      361 gagacaccag ggggaatggg
//
LOCUS       KCOD01003398             378 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 377772pyr ultra-conserved element
            locus uce-6841, sequence.
ACCESSION   KCOD01003398
VERSION     KCOD01003398.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 378)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 378)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..378
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="377772pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>378
                     /note="ultra-conserved element locus uce-6841"
BASE COUNT          140 a           57 c           66 g          115 t
ORIGIN      
        1 agtataattt aatttttact atcataggtg cagaaaacac tggaggcatt aaaatgatga
       61 aagaagaatt atgctaatac cacaaaaaag gatgcaaaaa tgatttatgt tactttcttc
      121 tcctatttgc agttcattaa gtcactgtct tctttgacca aacgaaaatt aaagtacttc
      181 agagaagaac tttaggttca agcatcatta gaggaagaga aatgggctct ttgatgaact
      241 tgactgcaga aatctataga gcacaactta ataagactgc acattgatct ctgatgctag
      301 aaggcagacc tatgattgaa caaatctttt taatgcatat ttttccttta aaaagcagca
      361 tatgatgcat gagaatga
//
LOCUS       KCOD01003399             801 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 377877pyr ultra-conserved element
            locus uce-5649, sequence.
ACCESSION   KCOD01003399
VERSION     KCOD01003399.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 801)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 801)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..801
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="377877pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>801
                     /note="ultra-conserved element locus uce-5649"
BASE COUNT          211 a          201 c          178 g          211 t
ORIGIN      
        1 agatgctcat tatggaaaac tgtagggaaa acttaaagaa aacttgttaa agaaaataca
       61 ttcacacaaa gacatacaag atgcactgag acactgacag aatatagttc aaaacactgc
      121 attctgaagg aggaaataac agtgagtagg tggatcagaa ccacatgttg ccaggctttg
      181 aatttcatac tcatatcctc cccgcctcct tctccccagt caaagcacgg aaagatcatt
      241 atgtttataa ttcggtgaac aactttaatg caagtctggc tactgcactg tactgtaaag
      301 atcactgcat gcataccttt tcctctgagt gccactgctg accagtaagt ttggttgctg
      361 tgggccctga ctatgcagga ggaaagtgtc tatgcttggc acggtggctg atgcctcctc
      421 acttacttta gggctgccga tcttgctctt tccaagcttg cctttgctgc gtcgggattg
      481 ctcatggtcg aactctaaat cctccagtcg ctgggtcagg gcaagttttt gctggatagc
      541 catgcgcagc agagagttca gggtcttctt ctcatcctct gcagcagcca gctgcctctg
      601 catctcatcc agctgtgtga cgtactcatc acacctaaaa acagggcaga aatctgggga
      661 aacggcccaa gaaccgaccc taccagtgag cacattcccg ggcctcaggc ggattcagat
      721 cccagctttt gctcaccata atcctagggc agcctgaatt cttctgttcc cactttgaat
      781 aaatttaggc ttggatctga g
//
LOCUS       KCOD01003400             423 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 377981pyr ultra-conserved element
            locus uce-6575, sequence.
ACCESSION   KCOD01003400
VERSION     KCOD01003400.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 423)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 423)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..423
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="377981pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>423
                     /note="ultra-conserved element locus uce-6575"
BASE COUNT          138 a           76 c           80 g          129 t
ORIGIN      
        1 tttttctgca gcatttaatc tctaattatt ttttccgtaa taagatatcc catgctgctg
       61 cagaatgagc taaatggttt atatttgggg caataaaggt tttttcactt ctattaccaa
      121 agggaaatat tagggaggtc tttgactgtc catgctatat gagcaaacac cacttaagcc
      181 agactctgct tcctaaacaa gtatttaatt tcctcattaa agatatatga aactagaaat
      241 caatgagcgc tggtggctag agctttatag cggaactaat ggctacacct tgtctaacat
      301 aagaaacttc acttgtggct tacagccgct acacgtggag aaacatgaac ctgaaaggaa
      361 aagttatgct aataattaca gcaatggata ggcaggtcac ataaatgtgt gactcaagaa
      421 ttt
//
LOCUS       KCOD01003401             642 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 378083pyr ultra-conserved element
            locus uce-547, sequence.
ACCESSION   KCOD01003401
VERSION     KCOD01003401.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 642)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 642)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..642
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="378083pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>642
                     /note="ultra-conserved element locus uce-547"
BASE COUNT          218 a          107 c          124 g          193 t
ORIGIN      
        1 aggccgtaaa gttctattcc tcacaaaggc aagatatatt attgctgtaa cgccattatt
       61 ccgctccatc acttttaaac cttgttccca ttatctgcaa gttaaatata accctatgta
      121 aaaacaggaa ggacagcgct aagttgtcca gcttaacagc acacacttaa aacataatag
      181 agcacttgtt actgtatttt atggaacgga aactccaaat gtaaagatgt attaaggaaa
      241 tatctcaaag ttattaggga aggatattta caattacaga ttgctttata ttatgctttt
      301 atgaacatct caggaaatga aatagccctc agctgtagag agtgaagagg gaggtaattt
      361 tccttaatac gggtgataaa attaatctga ttgaaatcgc tagcgattat ttcgcagaat
      421 actgagtggc agtacaatca cttacactct tttatatttt tttagtcaaa gctcgtgtag
      481 atgaaagcta attacaaagt agtgatgtga agcgctaagg aaatagtttg tatagcatag
      541 aacaggcaca gctaattggg gtttgtgatt acacagattg ttgttaggga gaattaacta
      601 ccagcagtct ctcctgcaaa gcttctcatc aagggaaagt aa
//
LOCUS       KCOD01003402             664 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 378192pyr ultra-conserved element
            locus uce-3704, sequence.
ACCESSION   KCOD01003402
VERSION     KCOD01003402.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 664)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="378192pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>664
                     /note="ultra-conserved element locus uce-3704"
BASE COUNT          208 a          121 c           99 g          236 t
ORIGIN      
        1 tcaaaatgca agttgttcat tatttttaca ctaacagttc gcttcacctc tttaatcttg
       61 aattttagtc ttttcaacat ttctcattta tgaaatgtct gtcaaaggtt ttgacatatt
      121 cacattcaac aggtagaaag ttaaagttgg ttgcccccat tatagaaaat gatgtttaat
      181 gagaactcgt gaaaaaaatg tcgtcgtgtt gcattacaag attcagaatc tgcacttact
      241 ctttacccct ttcttcccct ttcgttcctt cttgtactgt tccttcagtt tacttattag
      301 tccctggtct acatcccaaa cctcagcagt tggggacagg tcatctttgt ctacatgcag
      361 catattatta aaagaaaaaa aatcagcaat tggcaatgca agctgttggt gattcactgt
      421 caaagttatt aataaatctt tattttaaag gtgcagtctc agttttaagt ttataaaaga
      481 caaagtctca tttcatacag ttttccaagg cactgtatat tatcagttac atatttgaaa
      541 attgcacgtt aatttgttac taaggagctt aagcttcata agtaactgtt taagatactt
      601 caaaatacac aaaagatcat tggtgttcag aaacaattac tgcatcttta gaaagacagc
      661 atta
//
LOCUS       KCOD01003403             567 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 378300pyr ultra-conserved element
            locus uce-4007, sequence.
ACCESSION   KCOD01003403
VERSION     KCOD01003403.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 567)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 567)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..567
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="378300pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>567
                     /note="ultra-conserved element locus uce-4007"
BASE COUNT          195 a          105 c          107 g          160 t
ORIGIN      
        1 aaaaggtagc agcaactttc acatgatcct ctgcagaaaa gcaatatgag gagaattatt
       61 ttcaagaaca aactatgcag ccaagttacc taattgattg gagaattttt catttcaatt
      121 atgaccttga agtcagtgat gcctggaatg gccctcagac catgtcatgg gtgctctagt
      181 aaagatctat cgttagatca attactaaag caatggaaca tctgatccta cccttgaaat
      241 taaccaggaa aagtaggtca gcacaccttc agctgacaca atgaagtatt atgctctcaa
      301 tgacccagga aggaaagcac taatgattga tgtgaagaga tatttaaatg agaaagttga
      361 agcacactag aattaagcgc gtcagaatga tcaagcaact ctagacagcc aagtgccttc
      421 agataacagt aattttggcc aaatctcatg tgagaaaaca acagtcataa atgaaattaa
      481 aaaggattta ggcttcaaag atctaacagt ctttccagat ggcagtcttt tcttaccttg
      541 ttgttctatg ttttcctttc atttgtt
//
LOCUS       KCOD01003404             710 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 378406pyr ultra-conserved element
            locus uce-5684, sequence.
ACCESSION   KCOD01003404
VERSION     KCOD01003404.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 710)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 710)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..710
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="378406pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>710
                     /note="ultra-conserved element locus uce-5684"
BASE COUNT          199 a          144 c          152 g          215 t
ORIGIN      
        1 ttttgtcttc agtggccttg cctttgtaga actaaatctg tggcagacac acaatgaaaa
       61 aggagctact cctaccagag aaagggaagg cctcagagaa agggatgtag actatttact
      121 ccctcggcta caaatcggca tcgaactgga gtgtaaggag tgaatattaa cattcagccg
      181 gctgttactg cgagccgtaa tagacatgag cattgactag acccaatatt agtgatggta
      241 ctgggaaacc atccttgctt ttggctgcct gaaggcagta gtgatcccct gcttgtccta
      301 tctgtcagtc tatttgatct ccaaatgaat tgcttttgat aacagctata taaatgcaga
      361 actgttccgc tgggccttct taaatgagac tcctctcttt catctcccag tcatttcaaa
      421 aagcagatag acttgttaga ggtttttaat gcaatgattt atgttttatc ttgcctggtt
      481 tgaggcagca tttatttagc actaaattct tcccaagcct atgtgtgagg gagaaaggtt
      541 tcagcacaat atttgggact gtgtgcactt tgcctcatca gaaggaaata aggggtgtgc
      601 tatcttttca ggaatttatt gctccaattc acttggatca ttgcacctcc agccaaatta
      661 aacaggaagg aaacaatatt tggtaatcct cttcagtcta tggcaaataa
//
LOCUS       KCOD01003405             630 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 378511pyr ultra-conserved element
            locus uce-5475, sequence.
ACCESSION   KCOD01003405
VERSION     KCOD01003405.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 630)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 630)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..630
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="378511pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>630
                     /note="ultra-conserved element locus uce-5475"
BASE COUNT          228 a          109 c          110 g          183 t
ORIGIN      
        1 actgcccagc aggactcaca tacagtgcat ctcaggacta ccaagtttca gtcaggaaag
       61 tagagtataa aaccagagta ctaccttaaa acgagcaaag ctaaaaggaa tttttttgaa
      121 gattgcagaa agggaactgc atagagcttc tcttagtaaa tgtcgtaata aaggtgcatt
      181 gattaaaaga aattggttct attgctcata atagcatctc attgattgaa aagcattgcc
      241 tggaatggtt tcctccaaag cagcatctgt tatgtattaa cctctcagcc ttcggaatca
      301 tgggatatga atttcttgct caaactactg gtcagatgac ccatccatga catttaataa
      361 attgcaactc tgcacataga ttcaggattt cataaaaaca gggaaaaaaa agaaggcaca
      421 gtacaactgc attctttatg ttccaaaatt gtctaaactc agagtgtaaa ttctatttta
      481 ttaaatgaat taaaatcatc cagcctctaa tggtaaacag caatgtaatg attgaacatt
      541 gaatgaaaga aaatctgtca tgtctatttt gttaaaaaat gatacaagga caaggcagtc
      601 tttagtttaa atgaatgtac ttacctatca
//
LOCUS       KCOD01003406             330 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 378616pyr ultra-conserved element
            locus uce-5050, sequence.
ACCESSION   KCOD01003406
VERSION     KCOD01003406.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 330)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 330)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..330
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="378616pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>330
                     /note="ultra-conserved element locus uce-5050"
BASE COUNT           59 a           86 c          101 g           84 t
ORIGIN      
        1 gcagcgctgg tggggggcgc ggggggaggc agcagatggc agatggcacc gctgacaccg
       61 cttgtgggct ccggcgctga ctgattaact ctgctgtcgg agagccctct gctagcgtca
      121 gggtcaaaca aattgttttc acgcttcgtc agaggtttac ttaattagtt catttgcaat
      181 tagatctctt tgtagccggg atttttagca aagacatcag aaggagctga cggcgggctc
      241 cggctgtctg ctcggcgagc gccgttttgg ggttttccaa actcatcctg tcctctgcca
      301 cgctctcgga gcatcccttg gactgtgcca
//
LOCUS       KCOD01003407             825 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 378728pyr ultra-conserved element
            locus uce-7569, sequence.
ACCESSION   KCOD01003407
VERSION     KCOD01003407.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 825)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 825)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..825
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="378728pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>825
                     /note="ultra-conserved element locus uce-7569"
BASE COUNT          210 a          153 c          167 g          295 t
ORIGIN      
        1 gtcggtggct gttcaccttc cagcagcaag gattagctat ttacttttgc aggcaaaacc
       61 ggggcaccct gggaagccgt ggctaagaac tttcaaagca gcttccatta tctactgttt
      121 aggtcaagcc aactagcact tctgagtaat ttataaagtg ctatgctctg aggtattgca
      181 caatctcatt atcattagtt tttgcatatt taactacagt ttttaattag atggtatttt
      241 attattcatg cacataattt gactccaact caggcagttc tcttgtaaaa ggaaattcat
      301 ttgaatcaaa agtttgtact tcatggtgtt tagctggcaa gtggtgcaag tctgcagtct
      361 gtaatggctt tcttttaatt tagctaatag ctatcatgtt atgtaccttt ataaatttgt
      421 taaattcata gcactgggag ttgtctctct atgcggtaac tgtaagtagt ttgctgtgtt
      481 tggctttcac atacaaactg tttgctcagg ctccttgatg tattattaaa attggtaatg
      541 gactcctggg acgtcatcta gttatatgcc ttcatttgca gaataaacca tgcgttgttt
      601 tcatctttac tcatgattgt taatggcatt gatgatgaga ggggtgtttt tccactgcct
      661 ttatcagagc tgctttatta tgcaggcaaa atagccaagc tgctgatttt gtttaaggtt
      721 ttcaattagt catttgactg aacacatctg ttactggcag gcttccagcc ctggactgga
      781 gctattacta gtttacacct gctgaaccat ggccataagc tgtga
//
LOCUS       KCOD01003408             423 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 378837pyr ultra-conserved element
            locus uce-4284, sequence.
ACCESSION   KCOD01003408
VERSION     KCOD01003408.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 423)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 423)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..423
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="378837pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>423
                     /note="ultra-conserved element locus uce-4284"
BASE COUNT          132 a           66 c           69 g          156 t
ORIGIN      
        1 ctctgttgtt tcaagattcc ataaactgga gtcttatata ccagctgcta aagcaggagt
       61 tactgtctaa atgatattca caatgagtat ttggaaggtt tacaattata cccttgctaa
      121 taaattgtgc tattttcccc aacagtttta agtgctaatc ttcagaaggc attttaaaat
      181 tagctaaaat tctgtcaaga gatttacaaa aattgttagc atgaagataa ttatgtcaca
      241 gtccttggac tccatctctg attgtgtgca taaatcagaa aatgtcagct gtgttttccc
      301 ttaataatta tccttgcagc aatatattac agtttagatt actattacag tgttggttta
      361 ggtttataaa acacaagttt tttctgctga tgaaataatt cacgtttcta ggaattattt
      421 gtg
//
LOCUS       KCOD01003409             403 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 378942pyr ultra-conserved element
            locus uce-6044, sequence.
ACCESSION   KCOD01003409
VERSION     KCOD01003409.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 403)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 403)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..403
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="378942pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>403
                     /note="ultra-conserved element locus uce-6044"
BASE COUNT          135 a           77 c           85 g          106 t
ORIGIN      
        1 gctcacatta gcccttggaa agactctgat gtgatgcgtt gtctgccatg ttcaagccct
       61 cttctatagg caacctacca cctctaccaa aaacaagaat gaaagaaagc ctaaaaaggt
      121 gaagaaggat tttcattatg aagttaatta gcttctgagc caagctgcac cttttcaagg
      181 ggaggaatta gagggattta attgctttat cagccttctc tttgattttc agcaatcagg
      241 ccgattccat ttaatttaac tgccacagat gagaagaaaa ttgatgcact cacctgcctc
      301 ggagcagaaa gagagagtga gaaagaaaag ttggagaaat tggcaaatat agtgtctgca
      361 gattaatgaa aaccaacagc atttgctcac aattggaaat gat
//
LOCUS       KCOD01003410             866 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 379051pyr ultra-conserved element
            locus uce-335, sequence.
ACCESSION   KCOD01003410
VERSION     KCOD01003410.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 866)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 866)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..866
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="379051pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>866
                     /note="ultra-conserved element locus uce-335"
BASE COUNT          324 a          174 c          150 g          218 t
ORIGIN      
        1 cttccttgat gataaaggca aaataaaaaa aagaagtaaa gaagtcaaaa ctcaatggaa
       61 agtaaaatct ttaaaaaacc tatgttaatc tattcttctg tgattgatag caatggtctc
      121 ccaaaccatc taagcagatc gtgactctcc aggctggcag atattattga aaaaccctca
      181 tcccttgcaa accaagatgt actaaaactt acaacacaac ccctactata ttctgtaaaa
      241 taccattgct agagtaaagc atgaagattt acaatacaat cactttaagt gccccacagc
      301 caacatcaat cctaatcctt aagagggcta aaaataaaga ttggagggca gctcacaagg
      361 tagctgtgat caaattagga ggctgaaagg acagagaggg acgaagaagg aagcttataa
      421 acatctgatc cagctgactg tggccatatg gcagctgctg cccagataaa gagattaaga
      481 atagaggagt gcgattacag ctgtctggcc aattcaggca gctcaaatct acaagttcta
      541 aattagtcac aaatacaaaa actccttcaa ataattattg ttacgctaaa taaaagattt
      601 caaatgctac atgcaaggaa gaaacagtca agccattctc cggggtacaa aagtttttaa
      661 acacataact gatttctatc tttcagaagc actacagctg tatgctacta catttctgag
      721 ctgctggata tttaaccatg aagtttcatg aaagacttcc ctacaaacac attttagccg
      781 ggaaggtcct tttgtcgaac actctcgtat atttcactaa acctgtaaag tcatttaaaa
      841 gatgcaagac aagaacataa agcaaa
//
LOCUS       KCOD01003411             552 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 379161pyr ultra-conserved element
            locus uce-1297, sequence.
ACCESSION   KCOD01003411
VERSION     KCOD01003411.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 552)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 552)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..552
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="379161pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>552
                     /note="ultra-conserved element locus uce-1297"
BASE COUNT          177 a          122 c           94 g          159 t
ORIGIN      
        1 ttgttttcaa aatgctaaat aaacaataca taatgcatcc ctcatcagcc aaaaccatga
       61 gggctctgtg ctcaaataac aggaaacata ttcaattttc ctaacagaag acagttcatt
      121 aagctgtgcc acatcaaata aaactttaat ttctccagca tcagagtcgc aatgaaagca
      181 attgaggaag atgagccata tggtacttct atcagcaaac acatattgct cattccccca
      241 aagttttcta attctgctcc ccagacctgt gtaatataga taatgtgctc tgagcgcagc
      301 aaccatgagc tatctggtgt acacttctaa tactgtattt aatgggaaat aatgaatcat
      361 aaaagcctgc agaagacggc ttttgctaac ctaaatctca gctgtaattt cattgttctg
      421 tgcctaagat gctgtttgcc cttttcaaac agcagcagtt gaacataatt atgctgctac
      481 aaacctgggc tgcgaaagcc ttcctaatag aaccaagttg aaatcctgag cttagctgcc
      541 tgtcaggttt ta
//
LOCUS       KCOD01003412             533 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 379372pyr ultra-conserved element
            locus uce-2877, sequence.
ACCESSION   KCOD01003412
VERSION     KCOD01003412.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 533)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 533)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..533
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="379372pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>533
                     /note="ultra-conserved element locus uce-2877"
BASE COUNT          182 a           85 c           94 g          172 t
ORIGIN      
        1 aaaagacttc catcgatatt ttcagaatga agatatgcta cttcagagct ctgggattga
       61 acagtgttgt tgtattatcc ttttctttgg ccattgctgt gtactatttt tgttgttgtt
      121 ttcctcctct tcgtcaaagt ggcgaaaact ttgtgatcac tatcttgcac atggtggaag
      181 atgtctcagg aaagccgggt ttcccgagga gcaactccac accatttcat gtatttttaa
      241 aacccaactc ctagcactga agatattatt aaaaaacaaa aaaaaagaca gtaagaaaga
      301 agaaaatacc taatctaatg tgtagcagtt acatatttac caaataatgg actcaaaaga
      361 aatagatgtt tgaagagtgc tttatatatt aaaaaatcgc tttatgttta aaaaaagatc
      421 aatgtttttg attgttttga aaggaagaaa gacaatggaa taacatacac ttcaagtatg
      481 ttttaaaaat tatatgaaca ttgtgctccc tgcctgcttg gatcaggaaa ctt
//
LOCUS       KCOD01003413             760 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 379475pyr ultra-conserved element
            locus uce-3376, sequence.
ACCESSION   KCOD01003413
VERSION     KCOD01003413.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 760)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 760)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..760
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="379475pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>760
                     /note="ultra-conserved element locus uce-3376"
BASE COUNT          234 a          167 c          115 g          244 t
ORIGIN      
        1 aagcagaaat ctcatccgaa ttactctgga ataaagaatg ctggtttagg cacataagaa
       61 atgtattgat tccacttggt catgataact tacagctgtg atctcatctt gttattttcc
      121 aagactctct gaaacatcta atgctagatt taacttacac aagactcttg tggctttcag
      181 taacaccgac ttagcaccca tgtcacaaac atttgtttac ttttttccat ttaacttacc
      241 tttcctcatg cagttaaatc atagcatgca ctgtatgctg atttcctctc atagttaatt
      301 tgtatcttta gaaaaaagct ataggaaggt attaatctgc ttaacatttc taagtacatc
      361 atccaaggga ttttgttttt ttaatcttac atatgctcag cagagttact ggcaaaaact
      421 gtacattttc tccatttcat cctttcaaca tcaaatggta agcagcaaaa attggatcag
      481 acttcaaaga ctatgctgtg ctccaagtca cagagcgact cctccatttc acatattgaa
      541 ttcgagcagg atatcaaagt gctaccaaag aacctcaggt ccttactaaa aaagagtctc
      601 taacatctgt agaaagtgaa gtgcacagac aaatcacctc agggagcagc tagcatttat
      661 tctcagcagc aaatttccag ccttttgatt ctcttattca ctgtacctcc ctgtctctct
      721 acagaactaa agttcttagc aagcaggctt ttgtctcaaa
//
LOCUS       KCOD01003414             587 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 379586pyr ultra-conserved element
            locus uce-5964, sequence.
ACCESSION   KCOD01003414
VERSION     KCOD01003414.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 587)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 587)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..587
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="379586pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>587
                     /note="ultra-conserved element locus uce-5964"
BASE COUNT          135 a          158 c          132 g          162 t
ORIGIN      
        1 atcagtttgc aggcccttcg tggagctctt gtcatccccg cgctccctga cggagaaccc
       61 cgggagagcc ggctctcccc caagtgccac gtccacgtat ttcctatttg cctcttctcc
      121 aaactgttta gaaattacta gtagcggata agtaaattgc aagtaaacct agtgaattag
      181 gatgattctc tatcagttta atttatgttt tatagttagt ttagccttct gatttgattg
      241 ccttagtaat gtgaattgcc tacagctgct gatgatacag ctttaattct gttttaaagg
      301 tcatgtaaac atgtgcctgt agcataagga atgcaaattc aattcccttt taatgcttcc
      361 tcacattcac ttcacagcct tcacctagaa aattagcagg atttaatagg gaaccgtgtg
      421 gcttttgtga ttccattaaa agcccctctc ccccccaggc gtggctctcc cgggccaccc
      481 cacgcccgtg acgcggacac ggaggctctt cccacgcccg ggcggaaatc gaggcgggac
      541 ggactcatcc cctcacctgg gagcttccag ggctggaggc agcggga
//
LOCUS       KCOD01003415             811 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 379696pyr ultra-conserved element
            locus uce-1038, sequence.
ACCESSION   KCOD01003415
VERSION     KCOD01003415.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 811)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 811)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..811
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="379696pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>811
                     /note="ultra-conserved element locus uce-1038"
BASE COUNT          250 a          188 c          151 g          222 t
ORIGIN      
        1 ctgttcggag gtaccacctt tcctcacccc tgtataaatc caccatctgt gctcacacgc
       61 acacatgtgc cgtcgcgcag caaatgcgcc gagacccgac cgagcgcggg agccaaaaaa
      121 gcaccaggca cacaaaagct ccccaggctg ccccaggtct gcgggagcaa ggcggggaag
      181 aaaagatcct ttgctcattg cccaggtgag atagcctggt gcgtcctctc agcctcgaca
      241 cgcgtcaagt aaaagaaagg ttaaaattag aaaattcaat ttatttgata atttcccaga
      301 ataattagag ttaatatggg ttaattaata tgcaaatctc tcagcagatg ttctgcagca
      361 gggcctgtgt gagaaaacag cctttgcttt ctcctacgtg attttggctg tcagttattg
      421 ggtataatta ctgtaactaa ccgaatacac acaaaacctt tggaatataa aattgttaca
      481 gttctagttc tgcacaagct gctacttttc tgcaataaaa gcgaacaatt tctttcagaa
      541 aataggagcc tttttgttcc tttcttgatt taaaaagaag aaatgaatca agtaaatggc
      601 ttatcttttt tctatgcata attaggtcag tattatatga acattccaat gagcagtggt
      661 acaaacgtac atataaaatg atagctcaaa ccacctgcaa aatcacataa aattgtttta
      721 ttcagaatct tttccttcat accagaactt tgaaacgctc catgtctctc ctgccaacac
      781 tgccaacatt tgcccaattc aaagggatcc c
//
LOCUS       KCOD01003416             631 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 379804pyr ultra-conserved element
            locus uce-469, sequence.
ACCESSION   KCOD01003416
VERSION     KCOD01003416.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 631)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 631)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..631
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="379804pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>631
                     /note="ultra-conserved element locus uce-469"
BASE COUNT          209 a          107 c          148 g          167 t
ORIGIN      
        1 gcagatgcct gggaaatcga gtgcacccta aagaggttga gtgtaaggga aggaaacatg
       61 ccataaattc agaagatgtg ctacttagca atgagtgaaa gctgtaagga gggcaaaagt
      121 taattaggct actgtgctgc tgttagacag tggaaagtag ccaccaccag aaacaagatg
      181 gctgctcagc agtgccctaa tgcagccaaa agatcatctc cttctctgca agggcttatg
      241 ggttagggga aatcatacac agatgactaa tttttttatg gttcacagac gatcaaagtg
      301 aaattcagca gctgttcagg acaagtgacc actctaacgg ctgtaatata acctgctaaa
      361 tagagaggga attgcatgag agcaagaggt tagctgtgat tatcggcagg tgagtgcttt
      421 attgaagttg aaagaccatt aacattgatg gagtaattat ttcaacttga aagtaattac
      481 cttgatgggt gataacttct ccggtgttcc cagatttgat tggaccaaac aattgtgaac
      541 tcttgaagcc tagaaaaata ttacaacaat actgcaatgt ttaaattact gaaaccactg
      601 ttagagtatt ttaattatgc ctaacagtga a
//
LOCUS       KCOD01003417             668 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 379913pyr ultra-conserved element
            locus uce-14, sequence.
ACCESSION   KCOD01003417
VERSION     KCOD01003417.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 668)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 668)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="379913pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>668
                     /note="ultra-conserved element locus uce-14"
BASE COUNT          208 a          125 c          145 g          190 t
ORIGIN      
        1 ggacctgaaa ataacaaaaa atgctaaaca tcccaaaaca aacattcggc cgctgccaaa
       61 ttccacaaga agagagctgc aggccgagac agctctcatc tcgctgggga ataacgggta
      121 aagtttggcc atctgcccct tccaaccctt cggggaccca caatccaatt gcagtgtctt
      181 agcggatgtg aatttcaagg ttacacctgg gtgttcaagg gcagggccaa gtgtaatcgg
      241 cacttagatc atagattaat cttatttgcc atctattagg tttgattcct gcttcccgct
      301 ctccctccct aaagccagga ttattgtgat agtttaagat aatggattct aacggaagaa
      361 aggtcacgca ggcattgaga tttggaacct taagataata tgattaatct aaaagcttct
      421 ttctaaaagg ggagggtata ctctcataag tttaattgag gggagaggga gggagggaat
      481 tagcaacatg aaaggaggag tgaaggatcc tactttttgt caactgcaat taattaacat
      541 agtgaggaaa agctcttcat tcattttcaa gctgaaaact ggtctttttt cttttaaatc
      601 tctaaaactg atgatttttt aattgcaagt cattaattga taaaaacatg tatattggtt
      661 ttcaggga
//
LOCUS       KCOD01003418             436 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 380025pyr ultra-conserved element
            locus uce-6763, sequence.
ACCESSION   KCOD01003418
VERSION     KCOD01003418.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 436)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 436)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..436
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="380025pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>436
                     /note="ultra-conserved element locus uce-6763"
BASE COUNT          138 a           74 c           72 g          152 t
ORIGIN      
        1 ttagctatca tagtagctac aaaagaacaa atgtaaaaaa atgagaaact tactctattt
       61 cagttttttt cacctttttg tctatgcatg ttttaatata tgtccttatc aactatctcc
      121 tacttgatta atctcaggct gttctttcag gaaaaaatgt tattacactg actggaggag
      181 caaaaccatg ggcaggttgg tgggtgatgt gtaacttcta attttgtcag atagtcaccc
      241 tgctaaagaa aagtaaattt atccatgcaa cttggaaaat tagcttattt tcctgaaaac
      301 tcaaaatatg tcagctcgaa gtgttaaaat atttatctgt aacaaggtgc agtactttag
      361 agctttgcca gttctcattt tagaaatgta aaaatgttta tgccattatt ctcacagcct
      421 gccatgatat ctgctg
//
LOCUS       KCOD01003419             488 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 380243pyr ultra-conserved element
            locus uce-2036, sequence.
ACCESSION   KCOD01003419
VERSION     KCOD01003419.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 488)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 488)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..488
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="380243pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>488
                     /note="ultra-conserved element locus uce-2036"
BASE COUNT          153 a          119 c           82 g          134 t
ORIGIN      
        1 aaaaaaaagg cagaaggcct ctctatccac ctaatcacca tatcaatgac acatgccaca
       61 acagagaagc actagtttat ttgattgatc atggtagata aactccaaat aacagagaaa
      121 ttaacaaatg cttgacattt gctcaacatc cattattctg acactgcttt caggatttca
      181 aagcctggga gtatgcttaa tcaacattca tattccctag tgagctacag gcaccatatt
      241 gcgccccgcc ttagtactga tgaaaactgc atattggcca tttccaaaat gttctgggac
      301 tccacgcagg gccccttctc tcccttgttc ctgttctgca gttttctttt aaacacttcc
      361 aagacaaaag catctgccag tttttctctc tggggatgta tgcaaaatga acttaacagt
      421 tttaaggcaa gagaaaccct cacatctaaa ttcattcata ggacagaaaa gggcctaaga
      481 ggcctctc
//
LOCUS       KCOD01003420             699 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 380355pyr ultra-conserved element
            locus uce-6074, sequence.
ACCESSION   KCOD01003420
VERSION     KCOD01003420.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 699)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 699)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="380355pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>699
                     /note="ultra-conserved element locus uce-6074"
BASE COUNT          199 a          112 c          156 g          232 t
ORIGIN      
        1 agctttggaa tttagccttt aaaaagcagt gccgttcagt ggaaatgctg aagttctggg
       61 ttcattggta acgtgagctt ttgtctcctg gcagatttcc acaagacagc cccgtacgtg
      121 gtgactggga gtgtagatca aacagtaaaa gtgtgggagt gccgctgatg gagttcacat
      181 tttcctctgg atgcactcag ataccatggt tacccattga gctctgttta aataaatatt
      241 gtcctttcat gtaaattatt ctggatgtag attgagctta ttaaatgtta cacacaaagt
      301 attcatgcat ggtgaatcca aattgtatac tgtaaattta catacgttgt ctagaagtac
      361 cataggttta agaacatggg ctggcattgg tcacatcaga cctgagaagg cagaagtggg
      421 atgattggaa tagggcactt aactgaatag ttgacagtgt cgttatgtcg gataattata
      481 cctgtttttc tttctgctgt ctgttggtgc ctgaattggt gacctcattt gggaaaagtt
      541 ttgtagggct ctttcagaaa tgtgtatcta tgtaacatca cttaagtgtg cttaataaat
      601 cttctctaag aatactagat aataaggctg caattcagaa tcttctgaac cttatatgta
      661 attaatggaa attaattaaa ctctggaata tttgtcatg
//
LOCUS       KCOD01003421             579 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 380466pyr ultra-conserved element
            locus uce-8033, sequence.
ACCESSION   KCOD01003421
VERSION     KCOD01003421.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 579)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 579)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..579
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="380466pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>579
                     /note="ultra-conserved element locus uce-8033"
BASE COUNT          193 a          112 c          116 g          158 t
ORIGIN      
        1 aaatcactgt aggaacatga gattttaaac tcaaaaaata actcagcgtt gcccttttaa
       61 attgtttcca ctgacaaccg aagtcacggt ggcatttgtt cctgcacaca cacatgtatc
      121 cataatgatc catccctcgg atggcacagt tcttctgtgc ttgctacctg tcaggcttgt
      181 actccagaac cttgaatatc agtgactcac taatgtttta tgatatttta cctcacttta
      241 tggtagtcat ttatgacaag accagaatga cataaactgc cataaagcaa agcaatgcaa
      301 tcacacaaat gaccataaat caagatagca acagaaaaag gtcataaaaa gggaagaaaa
      361 ttggagaaaa caacattttt ccaaagtctg gagttagcag cagcgaactt caggacagat
      421 ggatgtgagc aggcaaagaa ttcagtgttc cactgatacc aatcattttg gaaggcactg
      481 acagtgatgc atagatgggc cttttaaggc tatttgaggt aaaaagagtt tattgcaagt
      541 gtgtgaatgg gcttgaagtt atctgagctt tgtcctaca
//
LOCUS       KCOD01003422             343 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 380570pyr ultra-conserved element
            locus uce-6445, sequence.
ACCESSION   KCOD01003422
VERSION     KCOD01003422.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 343)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 343)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..343
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="380570pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>343
                     /note="ultra-conserved element locus uce-6445"
BASE COUNT          115 a           61 c           73 g           94 t
ORIGIN      
        1 ggcctcacac gctgcctttt tttgtgacaa gtagcttgat ccaggctgat ctccactagc
       61 tgtttgaaga gtatttcagg actatttgca tcattttatc tctaatgtat aatatatggc
      121 tctaaagtga gcacaagtac tgtcttgtta ccaagcataa aaaagtaaga gcaataaaga
      181 tacattagtt ctctcaagca caacggctat aatgcaagca agaaaggttg ctacttagag
      241 ttaagaggta acctttctgc ctgactaaga caatggaaga gtaaagaaaa tgtcaaatca
      301 agaaaagctg gatttagaga tgaggcagcc cggaatgacg ttg
//
LOCUS       KCOD01003423             525 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 380676pyr ultra-conserved element
            locus uce-3326, sequence.
ACCESSION   KCOD01003423
VERSION     KCOD01003423.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 525)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 525)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..525
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="380676pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>525
                     /note="ultra-conserved element locus uce-3326"
BASE COUNT          165 a          106 c           80 g          174 t
ORIGIN      
        1 accctgtgca gctgaagtga gcactccagt gtgaactact gattcagtga tggcagaaga
       61 agatctcttt aatgcaagag tgctctaata tattatcatt cctgatgatg caccttctat
      121 ccagtaagtc tttttcttcc ctaaaatata ctgttgtttt gacacaaaca gcttgctaca
      181 cttaaggatt ttactaataa aacataatgt tgtgttagat attatgactg ttgccacagc
      241 tgaactgcct tgtcaaatca atcctaatat ggctcccaca ggcacataaa aaccttattt
      301 agctatcagt tatcctaatc actttgttca gtttaagggt gcaatacttc aagacccgtt
      361 ccaatttata catatatgcc cagccattta ataaagtctt gatttatata ataaattctt
      421 gtttggtact ttaaagcagc agtgttttat caagtgtgtt acatgtctcc tcataccccc
      481 aaataaatat gttaatatac acaaacagga tactcgcatg gaaaa
//
LOCUS       KCOD01003424             446 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 380783pyr ultra-conserved element
            locus uce-5031, sequence.
ACCESSION   KCOD01003424
VERSION     KCOD01003424.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 446)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 446)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..446
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="380783pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>446
                     /note="ultra-conserved element locus uce-5031"
BASE COUNT          140 a           88 c           66 g          152 t
ORIGIN      
        1 acttaaatat ggtctaagtg tctgaaaata tccatgaaat ggagatatac ctcttcattt
       61 aaaaccagaa cctttctcat gattgcatta acacccaggc tactgtggac acctgagaca
      121 tcctaggtcc taagcagtgc tgcctgaaga gcccgctagt caataaaata aaatacccat
      181 tctctttaat taacatatga aataaacaca atctgtgaca cctagtgtgc agcagcaatt
      241 aagaggcatt gcttagttaa acctcctaat acctcattta aatatgcaat taagggataa
      301 ttgccttcaa tcaattgaaa tattttacct caattttttt tttgtgaagc tttctacttt
      361 gtacttggtc tggcctaagt cttcttatac cacttgttaa agaaacatta ttcttttcag
      421 gattgcattg atttatggct tttatt
//
LOCUS       KCOD01003425             832 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 380894pyr ultra-conserved element
            locus uce-5313, sequence.
ACCESSION   KCOD01003425
VERSION     KCOD01003425.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 832)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 832)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..832
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="380894pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>832
                     /note="ultra-conserved element locus uce-5313"
BASE COUNT          244 a          127 c          191 g          270 t
ORIGIN      
        1 atttgcagca ttagtgtact caatcatgag aagtttaatt gcagtttgct tctatcattt
       61 ttcttgacag ctgttgaaaa aaataatgtg gtagatttgg atttatactg actttcaagg
      121 aggagatatt tgttcaaaag cagtcagaga gtgcaaagat ccatgccaat attcagaatt
      181 cgtatttccc ttgaatggaa ggttgtgata aaatggtaca tggtgtgttt tcattgcctg
      241 ttgaaagact ttcatgcagt taaaataagc attttgatgg tggttgaatt aagagttttt
      301 gtcagtctct tctcatcatg gatgattaga ctaaaacgtc tgcttgtctt gacttgagat
      361 caccacagct tcagataaca tgctttgtga ttgaaggtcg aaatattttg aattctaata
      421 ggctgccaga tgaattgctt gaaatagact gtaaaatttc aaggcttcct tttccatctg
      481 ctgtgaaaag aaccattggg aatggttgag cttgatgatc atagaattac gggatggtga
      541 ttctaaaacc ctcaaaggga agttgctatg gagatctagt tccaaactgt gaaatgattc
      601 acctctgaaa ggcttcaggg tctgagaagc tgaacacatc attgttcagg tggtcattgg
      661 ttaggaaatt gctggtgcct gtgtaatcag cactcctgtg gtagttaacg atctaaaaag
      721 gtttgttctg aatgatgtgg gacaacagca atgtgcataa gatggcttct ctcaatcata
      781 gtttgctcag cccggtgctt gtaaaaatat agtgagctaa atggcagaga ga
//
LOCUS       KCOD01003426             654 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 381006pyr ultra-conserved element
            locus uce-326, sequence.
ACCESSION   KCOD01003426
VERSION     KCOD01003426.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 654)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="381006pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>654
                     /note="ultra-conserved element locus uce-326"
BASE COUNT          243 a           92 c          110 g          209 t
ORIGIN      
        1 ataatttgta taaacatcct aacaaaattt taaagggtat taaacaccct gttttataaa
       61 cataacactt aatttggaaa catttagaag gtaacgcatt taggataagt gcacaacaca
      121 tgaaaataat aaatgaaatt ttcccagttt agaaaatgaa tgtaattaat taacatttaa
      181 attacatttt taattgcaat cataccctcc caggggactc ataagggacc ataattgcaa
      241 ttaaaagcat gtggattaga taataaaaca atgcagagtg tctgaaatgt gcgatttaaa
      301 atggaaagca gacattgtta tcggcacatc taacttaatt gtagccataa agcaaatgtg
      361 ctgtacaaaa taaaattcac atacgggaac atttaattct tgaatctctt aaaggggaca
      421 cgcttgagag cacattttat gacaggttct gtttgaaacg gccctttaag gctttagtat
      481 tcagggatag tgctttaatg tttttgcatt aataaaagca tagctgaatg ttcctattaa
      541 aatacacaga tacatttaag taagagatga aactgagtgc ctggaattta agttgcagaa
      601 ggcataatta tatcaggaat acatttttct ttgttctgct ttgttttaaa attg
//
LOCUS       KCOD01003427             342 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 381111pyr ultra-conserved element
            locus uce-3117, sequence.
ACCESSION   KCOD01003427
VERSION     KCOD01003427.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 342)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 342)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..342
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="381111pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>342
                     /note="ultra-conserved element locus uce-3117"
BASE COUNT          108 a           52 c           59 g          123 t
ORIGIN      
        1 tagtgataat tggcatttaa aacatatttc cgtagctcta gaaacaggaa accagggtat
       61 ctctgggaat ttatgaacac ttccgaaata ttgggaaaag tgtagtgaat ctttcagtgg
      121 ttgattccat cctgattgat cttatttttt gaagtaattg atgtttcttt agttcagtcc
      181 gttagtgcaa ataattatta atcaatatgc actcagctct tactttagaa gataattttc
      241 acacatgatt tattctgaac atttcaattg aactaccttt acaaggagaa aatcaattgg
      301 ctagtggtct aaagcacttt aattatctga agagctgtat tc
//
LOCUS       KCOD01003428             528 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 381218pyr ultra-conserved element
            locus uce-5681, sequence.
ACCESSION   KCOD01003428
VERSION     KCOD01003428.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 528)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 528)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..528
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="381218pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>528
                     /note="ultra-conserved element locus uce-5681"
BASE COUNT          132 a          135 c          102 g          159 t
ORIGIN      
        1 aaaaatgggc cacaccctga ctcaggccta ctgagctcac tgcctttttg gcagatgggc
       61 tgagctttcc tctgccaacg agaatctgtg cttttcagta gtcgggaaag ttgtttatta
      121 ttcaaccatc tcttccaaag caagggaaac tctgtttata agaagcttca aaagcctctg
      181 tcacagctat caaggctcta cgctctgtgc ctttgccaag tcaaattagg ttattttact
      241 tgatattaag tttgacaagc aaagagcctg tgaaaaccag aatcccaact gggcgtgcct
      301 cccacagctc actccatttt tgagggctaa aattcctaca gtagccccat tctcccctct
      361 ctttctgcct gtatttatct tgtctggaaa ttactgtgtc ctagacatct tctaatattc
      421 agcttctcca agaatgtgac caacgcaaac cggtctcggg gatgtctctg tgggctttgg
      481 cctccacaga tgataaattt attatcatgc taacttgcag gtccactg
//
LOCUS       KCOD01003429             620 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 381323pyr ultra-conserved element
            locus uce-5713, sequence.
ACCESSION   KCOD01003429
VERSION     KCOD01003429.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 620)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 620)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..620
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="381323pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>620
                     /note="ultra-conserved element locus uce-5713"
BASE COUNT          119 a          182 c          158 g          161 t
ORIGIN      
        1 gatgacggcg tgttgatgag ttctggctct gcagcctcca tggtcacagg caagcatgaa
       61 aggggcaggg gatggcttgg acatgtcctg aagcccgctg cccgcctggg cgcccagtgg
      121 ctccacactt ttccatgctg ttggcactgc caaagcgaag ggatctgatg gctgcactcc
      181 cctgcgcgtg ctttctgtcc gcccagatcc gtctgccttt gtgcaccttc ccttgcaagc
      241 ggcaatttct gacagctaat atttcacaga aaccggagcc agctctctcc ctcctctctc
      301 tctcttctgt ttatgaagct gagggtaagt gtttaattag ttgcctaatt gcctgggtaa
      361 ttggtagaca tactcagctc tccaagtaat cagtctgaac aggccttgaa aatatctggc
      421 ccaatattca ttagtgcagt taaatcgtta aacagttact gtgtttggtt cccgacaaag
      481 cccggctgcg ctggctgcgg ggccgctctc ccgggacacc ccccagggaa agctgctcag
      541 ggaaaaccct ctgtcccctg tgcagggtgg caatgggaga tgcctccttt tctctgcttg
      601 acctcttgct ccagcctccc
//
LOCUS       KCOD01003430             502 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 381433pyr ultra-conserved element
            locus uce-1044, sequence.
ACCESSION   KCOD01003430
VERSION     KCOD01003430.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 502)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 502)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..502
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="381433pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>502
                     /note="ultra-conserved element locus uce-1044"
BASE COUNT          141 a           96 c           89 g          176 t
ORIGIN      
        1 ttcttcccta gtacagtgga gcagatttct gaatgaggct gatgagattt gtaaaatacc
       61 ccaagttaat ttagacagca ggttagcccc tcaacaaaac tgtggcccat atacaagtca
      121 aatctgcttt tttccttggg caatgattta tttccctctt aaattggctg gaccagttag
      181 ttttttattt ttattaagtc acactattct taaatgaaac tattgattta aagtcagctt
      241 agtgaggatt taatttgttt tcaggggatt agagcaggta acatgggata attttacaat
      301 aaagtggaat agaagcattc cttcacatta ccctcacctt tttttcttgc cagcctgcac
      361 agacattaca aattttcaag tgaattgtgg aaatacattc ataaatcagg cctaattcct
      421 ctgcctgctt aaaggctatt ctaaagaata ctttcctttg accttgtcca tgtttgtcct
      481 tccatgggtg ggtgcatctg at
//
LOCUS       KCOD01003431             505 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 381543pyr ultra-conserved element
            locus uce-3664, sequence.
ACCESSION   KCOD01003431
VERSION     KCOD01003431.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 505)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 505)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="381543pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>505
                     /note="ultra-conserved element locus uce-3664"
BASE COUNT          154 a           90 c          109 g          152 t
ORIGIN      
        1 aaagtaatgt cttgccgtct gcggcgagta caaacaggac cccctaatgg cagccatttt
       61 tatttgtttc ttaagatcca aaggctgctg aaagaacaat tggataaagt tgaggattgg
      121 agaagcttga ttttcttgtt ccagtgaaat gaaactcccg tccttttttt tcttcccctt
      181 tcccttaaaa gccggagtca gctagggggt tgtagctgtg tcaaagccgt tgggatgcca
      241 ctgctgatca ctttaattac taggactaag gaggataaaa ttaaaagtag caccattgaa
      301 gcagtggaag aaagcttgcc gagatgtcag tgaactgtga aatataaaaa ttgcatacca
      361 atacattttt ataggaaaca aggaattaca ttacttattc ttgaagagtt tgtccttaaa
      421 tttttcctca ctgtgcatct gcatggcaga tctttaaagg ggaaaataac aaagaaaact
      481 gtagtgtctc tttggcatgt cagat
//
LOCUS       KCOD01003432             812 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 381652pyr ultra-conserved element
            locus uce-5092, sequence.
ACCESSION   KCOD01003432
VERSION     KCOD01003432.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 812)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 812)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..812
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="381652pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>812
                     /note="ultra-conserved element locus uce-5092"
BASE COUNT          248 a          158 c          157 g          249 t
ORIGIN      
        1 tagcaaatta ccctgtaaac agcccacaag agctggtctg taattgaatt gtaactgttg
       61 actttagaca tttggtatat ttgctgcaag aagtaaattt tcaaaacttc atcttgatgc
      121 agtcagacaa aatgaaaggt aatattcttt atctgccaca gattgctgca gatgaactgc
      181 tttcatatga gcttaaataa gatttagtgt attccatcct tcagctggcc acaattgaaa
      241 gtgatcagga tcaatatagc tgcccctgaa tgcagcccag tattgtgcat tacaatagag
      301 gaaatggctg tattcaaaat tttcctgtgt caaattaatt tccatgttat ctccaaattc
      361 aattagatgg gaaccccgtg taactaaaaa agtgtccgac atcccttagt gacaaattac
      421 ggtgcttagt gtgcatatca aggtgaagtg ttgagccttg ctaatcttct cactaattct
      481 caattaccgt aaaatgaagc cataaatcac acagacaggg gatcgatgga aatgttgttt
      541 tcagggtgat tggcagcctc cccaaaggtt ttctgtaagt tggtttaagg ttaccattct
      601 ctaaggggag ggatgaggta gtcttgctca atctctatga tataggccca caggcctttt
      661 ggggatagtg gggagggaca gcaccaattt cagcccatca gacatccaat ttttctcctt
      721 ttcatacctg ctgtagtaaa tgagaaacaa attaaatttc actccactat ctccacagaa
      781 accatttaaa tttttcatgg aaactaaatt gt
//
LOCUS       KCOD01003433             667 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 381764pyr ultra-conserved element
            locus uce-1563, sequence.
ACCESSION   KCOD01003433
VERSION     KCOD01003433.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 667)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 667)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="381764pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>667
                     /note="ultra-conserved element locus uce-1563"
BASE COUNT          155 a          147 c          172 g          193 t
ORIGIN      
        1 ttccctaact ggaagctggg cttgggagga agttgctttg cagctttggg caacagggag
       61 ggaggagcag caaagttgct tgacaatctg ctgtcccaca agtatttttt ccatttcctg
      121 gtaggtggat taaaagccgg ttaacgagct cagaagctgc atgcgcgctc accacaggaa
      181 gtatccattg caatttttgc caagttatct gaaacccctg cttgaaccct tggtctgccc
      241 ctaatactgt tcatcatcct gttttgtgtc acaacaccct gctaccttga ttcactcttc
      301 gtcgttggct aggttttgga tttattactt tcgaggacga acaatcagtg gaccaggctg
      361 tcaacatgca ttttcacgac atcatgggca aaaaagtgtg tagttgtagt tttattttac
      421 cttaagaaag aaccaagtct tgggcaacga gcgatttcac tctttatcca tgaaggtggg
      481 gaaagtcggg ggcagccttg tgggctctgc gaggccttgt gtttacagac ctggggtggc
      541 tgagcacact gggatgaact ggtgctcatc tgctttgagc acggtgcaag gagatttcca
      601 gctgttggaa tcccagtgaa atccgagttg ttcaaggctt ggtttaagat accactcctt
      661 cagatgt
//
LOCUS       KCOD01003434             693 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 381863pyr ultra-conserved element
            locus uce-2149, sequence.
ACCESSION   KCOD01003434
VERSION     KCOD01003434.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 693)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 693)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..693
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="381863pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>693
                     /note="ultra-conserved element locus uce-2149"
BASE COUNT          210 a          130 c          131 g          222 t
ORIGIN      
        1 tctgcataaa ataaagagag aaaataaaat tccagcagct acaagctggc gacattatac
       61 tgtcataatc cagaaatgaa cattgattct gaggaagtcg cttcttcaaa ctttaacgca
      121 acaattaagt attccattgt catggctcaa ttaaatggta tggcctgaga aaattgggga
      181 ttgtaaagtg aggatggaat gtgctttgat cctctttcca gggttattgt ttcattaata
      241 aatgaacatg tcatttgtct caccagaggg agctcctgcc ctccaggctt tttccctttt
      301 ttgttcaggt tttataaaga tgaatttcca gtgctctgaa ataccatgga ttagtagtta
      361 agcctgacag cacttcgggg agtagtgggc ttaaagtgcc tcacacaggt ctccaaagca
      421 cttgtttact aatagaggaa atcagcgacc gtctgcagct gctgatatcg cattaccatt
      481 tggaaagaca gtagctgaga taacaaatca cacagtttta ataattactc ctgcattcca
      541 gttttttgtt tcctgcatta ctgcaaaggc tggatttctt ccaaataaac agataaaaac
      601 agtatggaac ttttatcttt taatgataat gacaacacat catgtttcac taaaagtttc
      661 ctgctggatt tttttctgat ttctagagtt tca
//
LOCUS       KCOD01003435             264 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 381965pyr ultra-conserved element
            locus uce-4011, sequence.
ACCESSION   KCOD01003435
VERSION     KCOD01003435.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 264)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 264)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..264
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="381965pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>264
                     /note="ultra-conserved element locus uce-4011"
BASE COUNT           88 a           46 c           49 g           81 t
ORIGIN      
        1 tgaatacaga agggcaagtt aaatcctgtc attgaaacag caaacagctt tagtcaaatg
       61 tattggcaca gaattaaaaa tgcatcaagc atgtatttgt cttctcaatg ggaagccctt
      121 attaatagtt tgaagagtag aaagcttagc cttatgcaac aagcgctgta gtagaaatat
      181 attttaatgt gtgaaattgc aggatgccaa ggttgccatt aaagctcctc tctattccag
      241 taattttccc acttagattc attc
//
LOCUS       KCOD01003436             704 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 382077pyr ultra-conserved element
            locus uce-395, sequence.
ACCESSION   KCOD01003436
VERSION     KCOD01003436.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 704)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 704)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..704
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="382077pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>704
                     /note="ultra-conserved element locus uce-395"
BASE COUNT          199 a          119 c          167 g          219 t
ORIGIN      
        1 ggctatttta agaatgtagg acagggttaa ggattagtac cagcatttct tttctgtgta
       61 tcagagctgc ttagcagtaa ttaattagga cattgggttt tgtactcttg gttcaggtca
      121 tttgcctatg agcagctcaa gccttttaca aaggcacgct gcatatgttt ctgggtacct
      181 ttttgagaga agatttaaat tggccagatg aataatactt tgctacaagt gttttgccct
      241 aggcaaaaaa ggttttcttc atattatcat cgcccggagc tggaatcctc aagcttgatg
      301 tgactggtgt tatactgtca catggcaatg atgtaagaac aggagctctc tgtgtcagac
      361 aaatctggat ttaggggaat tatagcagat gttgcaaaat ggcaacagtt tagcaagttc
      421 ctttcatccc ttggttggga ggcaggtcca caaagtacac ccagacagag aagaatgtta
      481 tctttgatcc cccggggcaa ggagactcca cccgatgagg gatgcagcga ggctggaaat
      541 aaaaataaat ttacttgctt ggcagtatgg aaattggcca ttatttattc atgctgtttg
      601 cccagacatg tataaaagat ttttcatgta ttgtgcgtta taaacagatt agggcactca
      661 atattaagat taatggcatg gaatttgtgt gtggttagat taca
//
LOCUS       KCOD01003437             542 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 382185pyr ultra-conserved element
            locus uce-3018, sequence.
ACCESSION   KCOD01003437
VERSION     KCOD01003437.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 542)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 542)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..542
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="382185pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>542
                     /note="ultra-conserved element locus uce-3018"
BASE COUNT          162 a          101 c           98 g          181 t
ORIGIN      
        1 aatggaaaag gaggtgaatc tatctatggt ggctatttca aaggtaagag catgtctttg
       61 cagattcttt gttcagttct gagataaaca agtcttgatt cgcttaatga aaacaggtcc
      121 actcatagat caccttttgc atgaaactaa tgttgcatga caattccttt tatatgcatg
      181 acttccggat agttaatatt taacaaattg acaattaatt aaggctaact ttattggtct
      241 ttcagcatgg aggctaggca actttattca tgaataaact cctatcttcc tgcctaaaac
      301 tgtcaacata ttcttttgtt tatagagaat gtggtctttt gcaaaatgaa aaggtaagag
      361 acaaaagctc agtaacacaa attcaaactc tgttcccttg tcccctccct atatatagac
      421 aactgctaag tccctttgta gatggatatc tgtgttgctt ggagaaatga agagttctgt
      481 ggggttaatg actttaaaca gtgaatgtcc cttctcctcc ccttccctac tcaaggtttg
      541 ta
//
LOCUS       KCOD01003438             733 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 382294pyr ultra-conserved element
            locus uce-1051, sequence.
ACCESSION   KCOD01003438
VERSION     KCOD01003438.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 733)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 733)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..733
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="382294pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>733
                     /note="ultra-conserved element locus uce-1051"
BASE COUNT          238 a          114 c          171 g          210 t
ORIGIN      
        1 caaaaaagtg cacctgtaga gcagaaactt gactgttctc ggttctgttt taattatcaa
       61 gccttagagc aaaaactagg tttcaaagaa aactttctgt acaggcctca atagagttaa
      121 aggagaaaca ttttaagttg atgagctgac acttgtagaa gcaaatatat taaataaatc
      181 atgattcgtt ttggggctaa atctgactta catcaactct ggaaaaacta gatcctaatg
      241 agtgacagtt tggtgttttc tgtcacttcc tacagtaatg gccccaagct gacactgctc
      301 tgtgggagtc taatacttct gaacaaaagt ttttttggag tgagatagac aaggtagaaa
      361 tcccaaggtg actggaagga atgtctaatg actggaaaga catatttact ggcagactgt
      421 gtgtaagctg tgacagttga cagggcttga ttgtaataaa tatagttgat gaagagaagg
      481 ctgacaggtg aggacagaga gagaaaaaga gtcaaaagat ctgcattggc tgaaccctat
      541 taatggtaag ttggtaacaa agcccagagt cataaaagaa agcaggtatt gcaaactgat
      601 gtctaaacag tgaaatgtgt aggacttgca ggttgctgta acaagctcag atttgttgac
      661 ctttcttcta gctattttgt aagtggtgtt ttcagttcag caggcaggca cctgatattt
      721 ttaaacgctg tgt
//
LOCUS       KCOD01003439             453 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 382403pyr ultra-conserved element
            locus uce-4280, sequence.
ACCESSION   KCOD01003439
VERSION     KCOD01003439.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 453)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 453)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..453
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="382403pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>453
                     /note="ultra-conserved element locus uce-4280"
BASE COUNT          132 a           81 c           97 g          143 t
ORIGIN      
        1 taagcagcaa ttcacaagca ttgcaggaca ccatctactg ctaataaaga gaatgtgtta
       61 aggcttcaag gttaatggaa atgtagccaa taaatgctga ttttttttta cggcagcacc
      121 taattattga cattgttagt gcagctgctc ctgttttgat ttggagttat tgttcagtgt
      181 agctgagaga gtgaactgag acactgactg tgtggagaga tatcaagtga gctatttgag
      241 ctgcttatca attgttaatt gtctactgat ccttaaacca gatacctaaa ctgaaaagac
      301 cactttcagc aacagatgca aattatatgg atcctgtagg tgtgcaggcc ctacaacata
      361 agtgctaaat tttttattgc agctttcata tctgggcagg tgtgggcctc caaacccaat
      421 gttgctctga attcatttgt aagctgcata ttg
//
LOCUS       KCOD01003440             569 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 382508pyr ultra-conserved element
            locus uce-5903, sequence.
ACCESSION   KCOD01003440
VERSION     KCOD01003440.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 569)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 569)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..569
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="382508pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>569
                     /note="ultra-conserved element locus uce-5903"
BASE COUNT          159 a          116 c          115 g          179 t
ORIGIN      
        1 ttactgtcct aaaaagcaaa tgtaatatgc agagggaaaa cctgcttgca cagagcagac
       61 atatttctgg gcatctctgt agcgagcaga gggaggatgt tcaattagtc tctttaccac
      121 tagctcccca gttagtctcc ctctggaaaa taggtgagaa attcttatat tcctctcaat
      181 atgttaatca gacaactggt atcagttctc taactgtgta ataccagtcc cccttggcag
      241 atatatttta tttggataat gatgtgaaat ttaagatcta cgtttcaatt gtagagagcc
      301 ataggcagtt gtcaatttta gtgacagaca tgaacctgga gctaaattcc tgtgcacaag
      361 caaaaattcc aacaggagta gagcaattct ggtcccttaa tagaaataca ttttctccca
      421 ttgaggggca gtatttttaa actgcttgtt gcttctcctg gtgctgcaag tcccaaatgt
      481 tcccagatgc ttccttttac ctggacagtt tgggaatttc ctgtgaaatc taatggttat
      541 ctgcctaaag tggccattgc tttggtacc
//
LOCUS       KCOD01003441             721 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 382619pyr ultra-conserved element
            locus uce-4673, sequence.
ACCESSION   KCOD01003441
VERSION     KCOD01003441.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 721)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 721)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..721
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="382619pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>721
                     /note="ultra-conserved element locus uce-4673"
BASE COUNT          204 a          163 c          147 g          207 t
ORIGIN      
        1 tgagttttat cacctcttct gctgtgctat gcacctgctt ttattgccat caaaaaggca
       61 accagtattt gtacagaact cagcaaataa aaatgggtcc cagataaaag gtgtgtcctt
      121 tctagtaaag cacaaaaaaa tcttaatctt tggtccagaa gcagtagatt gccacaaaca
      181 gtcggcagct aaaatcatta atctttgctg cttgcccaac tggtactagt agtaaagaag
      241 ataatacact agcagaatca gtgacccact acaaattggt cctgaaaggt ccaccagcct
      301 aaatagactt ttgctgatcc aacacttgtt aggaatccca acaaagagac tattggctca
      361 tctgatgagc cgctcactat tgggcctttt gcaatggctg gtgatggatg accataccct
      421 ctttgagggg gaagatgcag ctcctggtat ggggcctttt ctcatcttaa atttgtactc
      481 aataaatcac aggtgcagaa gagacagcat cagtttcatt acacctacat gctccagtat
      541 caatcatgcc aacacaacgg gctgcgtaca gttcatttcg ggaggctctt tctgttccaa
      601 taccatttcc attccgttgt gctttagcat tcctaaagtg ttgaacatct gcagtggatg
      661 ggatgtgctg taattgcact ctttcgacag gagacattcg gtgtatgata ccctgctatt
      721 g
//
LOCUS       KCOD01003442             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 382729pyr ultra-conserved element
            locus uce-7321, sequence.
ACCESSION   KCOD01003442
VERSION     KCOD01003442.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="382729pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-7321"
BASE COUNT          198 a          126 c          110 g          206 t
ORIGIN      
        1 cgctctaatc ccctattcag tctcaatctc attaacatac caggcttaat tggcatttca
       61 tccctgcatt gtgtctccaa aatgaacaag gtgtaattat gttaaaaaga gcacttcaac
      121 ggttttagtt taattcatgt cattcatccg cgtcagaatg aacgcagatg ttctattgcg
      181 ggatacagca agagatgagc agctttgaaa ccacacttct gggttgaaaa ctttatgtta
      241 aaaaagttat ttaagtgaaa acacagtatt ttcttccttt gtttccgtgg ctatacaaca
      301 ttaactttca aaagctggtt ctgcttaatt tgatttttca ttttcaaatg aacagctgtg
      361 tttaagtcta aaagcccttt gtttaagcat acagagcccc agaaaaggtt tgaacaaagc
      421 atctttctgt aaacacttga ttaccaggaa aggcctggct tccaaagtgt ggttttgctc
      481 taggttctct tttaaagaaa aaaaattgca tcacttctca gatgtcaaac aacaaaagca
      541 acaaatgtct tactaattgc atgggcttct tgtagtcaag gtaaataagg gaagacagaa
      601 gaggattttc caaatggcca ttttccatcc tttcttccct
//
LOCUS       KCOD01003443             726 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 382836pyr ultra-conserved element
            locus uce-6238, sequence.
ACCESSION   KCOD01003443
VERSION     KCOD01003443.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 726)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 726)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..726
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="382836pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>726
                     /note="ultra-conserved element locus uce-6238"
BASE COUNT          187 a          141 c          134 g          264 t
ORIGIN      
        1 attattcacg ttgcattagc atatgcgctg tttatttccc taattgtaac aagcacttaa
       61 ttaattacac tataacctct tgaatctata ggccaactgt tgcatcttta gttaatattt
      121 taaagtctca tctttttttt ttccgtgtgt ctttgatgtt ttgtttctta cccttcttgt
      181 ttgggttctc tgtggaatag tcgcagaata attctgcagt tctcttttat gactgaaact
      241 ttgcatttta acagtggtct ggagatagtt tcttccttgt gaaatatcag ttttaataac
      301 aagaaaagaa aaatgccata aatctgcact aaccacataa agctgaagtc tctgagagac
      361 tgattaacat tgagactcta cacaggtttt tcaataatta gaggatgtgc ttgcatggag
      421 ccatgactgc tctggccttg atgctgtttc ccagagcagg cagcaattat tatagcccac
      481 agtaaatttc ctacactcgt tgcctccagc cactgaagat ctttttggag taaaggtctc
      541 ttaatttttt cttctcatca gtttggatta gcaacatgtt ctacgtattt tcttcagttg
      601 ttttaaattg acatctgctt ttctgctgca tgaggttgaa gggatctgat catagcagtc
      661 ctggagtttt ggcagggcag ccagaaccaa actgttacca ctgtctttgg gctcaagtga
      721 gtaacc
//
LOCUS       KCOD01003444             731 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 382946pyr ultra-conserved element
            locus uce-2830, sequence.
ACCESSION   KCOD01003444
VERSION     KCOD01003444.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 731)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 731)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..731
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="382946pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>731
                     /note="ultra-conserved element locus uce-2830"
BASE COUNT          260 a          130 c          153 g          188 t
ORIGIN      
        1 atagtgccat tgcaaaacaa gaaatgcttc atactagtaa atgtacatag aaacaaatat
       61 aaaaccaaag tgtcaccaag acgaaatata atttctaagg cccagtctgc cccatataac
      121 attttttctc tttgcgaatt tctgtaaaaa taagcatggt tgacataaca aaatgtagta
      181 agtttgcatg catgctgaat gtgtttaaaa cacattacaa agcacaaaca catgggttta
      241 agtcaggcat agtccaatca tgataaagct ttttgcctaa cctttataga acttactctg
      301 ataggaagta cggatccgtt tcgttaaatc tggataaaag ttagacaggc cacgcatgca
      361 aaagttgtct ttggaacatg ccagtacacc agcatcagca gcaggcagag gaaagagaga
      421 aaaaacagtc taaagtgaaa ggaactgatc ataaccagca tctagaacag ccaaggtgaa
      481 gaaatttcag cagatgctta ccttccaatt gggagatata acaaaaataa tcaaagtaaa
      541 ggatgtggga tggatggtga gaaagcagct gaggcttttt tagatgcata gtttctatga
      601 gcaatctaga agtgtgcaat ccttcttagt tttatcccca gtgggctcca ttctggcagt
      661 actggatagc tggaatgata aaggattggc ccagatgaca gagaaaaacc ctctgtgatg
      721 cagtgctggt a
//
LOCUS       KCOD01003445             696 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 383057pyr ultra-conserved element
            locus uce-4173, sequence.
ACCESSION   KCOD01003445
VERSION     KCOD01003445.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 696)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 696)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..696
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="383057pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>696
                     /note="ultra-conserved element locus uce-4173"
BASE COUNT          198 a          135 c          128 g          235 t
ORIGIN      
        1 actagtcctc atcttcatgt ctgaattaaa ataaatcttt ccttttgagc ccctaatgga
       61 atgaaagaag caagtctggt tgcctatgcc attatgaatt tcagagtcta ttcttggtga
      121 tgaaatttgt atgctgtatt tgaacaaact gtcatgctaa tgacattcct cagtctggtg
      181 tcttcaataa taagcaaact gagtttttaa atgtagttga tgggattttt tctctctcag
      241 acaccctatg aggaaaaaca gaatttccca tttactttca tgacctctga tttaaaagca
      301 aagattgcac attatttact actggatgat tttcctgaaa tttaatgagg actaagtaca
      361 aatatgacag aagtaattat cacagtttta ttctgcacag tcagggtctc cttgtgctgt
      421 aattgcaagc ctttcattca gctgccgata tcagagttat tatcatagta ctttatgtta
      481 tttcagagag gagggaaaca gatttctacc tcacttttac cctgcaaatt tatcctaagg
      541 actcattttg cctggcctca tgctacagca aaattaggga agaacttgga ctaaatcttt
      601 cctgattctc ttcacccatt cccagctgca gcgaggccag aggtattgag gtgttagcat
      661 tttttaaaca tgtgggcagg tggccagctc attgtc
//
LOCUS       KCOD01003446             275 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 383161pyr ultra-conserved element
            locus uce-4935, sequence.
ACCESSION   KCOD01003446
VERSION     KCOD01003446.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 275)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 275)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..275
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="383161pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>275
                     /note="ultra-conserved element locus uce-4935"
BASE COUNT           62 a           70 c           63 g           80 t
ORIGIN      
        1 ttacttaacc atcatttctg tttagcccta aagaagaata atatcactaa atttcccaat
       61 gttcactcga gggtaaggat ttcttctagc acagccgtgg tggaggattc ccagagctgg
      121 caagcatcac tttttacttg gcttcctcct ctctctctgt gccaggcagc tggtggtaga
      181 tgtggctgag ctaatactgg tgagacccag atccttgatt ctcccctctg gaggtgcagg
      241 gccacaggat ggtccatcat cacagttttg gccac
//
LOCUS       KCOD01003447             717 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 383269pyr ultra-conserved element
            locus uce-374, sequence.
ACCESSION   KCOD01003447
VERSION     KCOD01003447.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 717)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 717)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..717
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="383269pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>717
                     /note="ultra-conserved element locus uce-374"
BASE COUNT          216 a          146 c          124 g          231 t
ORIGIN      
        1 aaaaaaccaa ctccctttgc taaatcaacc ccagattcaa tatgaatcat caaatttaat
       61 attaccatga tcagtattca tggaaaaaaa atgatgccaa atatgcttta agaaaaaaga
      121 aatctgttta aatggtatta atggtaaggc atactacagc aaggtgaaca acactgataa
      181 tattaaatta acccaagagg ctccctaatc aggatcccta tgcagaaatc tgcttgccaa
      241 ctgtcgttct ttttcccatt ggtttagtta agggttgaag ttcttcttga agtttctttt
      301 ttaatcatta gatcccgacc ttacagtttt ctctgactac tttccttcag gctgtctttg
      361 ctcctgtcaa tttaggattt ccagggaatt attcttcttt gaaatgcata ttccaggctt
      421 gaaatactgg catatgtaca ctgtagagta attgtggagg ccaaatgttt aattacacat
      481 gacagctgga gctgtaggag tccgaggcat gcttgaaaac aacttatgcc ctatgcagtc
      541 ttaacgaaaa ggaacaaaat aatatatatt taggttttgt gccacatggt agccgctgtt
      601 ctctctcttt tcacaactga gggtggtttg caagaagttc agctgctttc acttctgtgc
      661 accgtctctc tgaatatata ctctccttca tacagtctag gcacaaactt tcagacc
//
LOCUS       KCOD01003448             730 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 383381pyr ultra-conserved element
            locus uce-3786, sequence.
ACCESSION   KCOD01003448
VERSION     KCOD01003448.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 730)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 730)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..730
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="383381pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>730
                     /note="ultra-conserved element locus uce-3786"
BASE COUNT          180 a          168 c          175 g          207 t
ORIGIN      
        1 gcagctccca gcacctagca gagaggcaga tagtttttga ctgaaatttt gtgagcccca
       61 aaatagtgct ctaagtgttt aatgcttttc tccattagac agcaaattag ccctaggctc
      121 acaaaccaaa tgaagtttca tctcgatgat tggagcctgc tcaccaggca gttttatccc
      181 aagttcccgc atgctggttg gtcagtgaaa tggagactgc aacttctatt tattggtgca
      241 atacagtatt tgatactgct aattacactt aattagtcct tccaccattt aattaaaatg
      301 gcttctaatg attgtgcttc tttggcaggc tctttggtac caccgggaat tgtgctgcct
      361 gcagtaaact gatccctgcc tttgagatgg tgatgagggc cagagataat gtttaccatt
      421 tggactgctt tgcctgtcag ctctgcaacc agcggtgagg acacagttat tgtacacaca
      481 aactgattta taccgaaatg tttgatgccc gcggggctcg cagcctgctg ggctcgggct
      541 ccaggctgac ctggatacct gtagcccttt tactgcaaat ccccttggag ctggtgggag
      601 ttggaggggc aagggggagg acaggtacag ctgctgctga ataaaacaaa ctgctcctac
      661 cctctttaca gaaggcgatg gtgaatggac ctcctctgaa actgacgtta tctaaatcgt
      721 gtttctgaca
//
LOCUS       KCOD01003449             594 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 383493pyr ultra-conserved element
            locus uce-7456, sequence.
ACCESSION   KCOD01003449
VERSION     KCOD01003449.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 594)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 594)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..594
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="383493pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>594
                     /note="ultra-conserved element locus uce-7456"
BASE COUNT          182 a          121 c          130 g          161 t
ORIGIN      
        1 aaaaaacagc aactgcttta gctgagctgg gaagagaggt tgtgcatgca gtcaaagcca
       61 taaacgccag ccttggtctg aagaaaggta attgtgctgc gaatgctgac aggtctgaca
      121 gaaagtgtct tcattgagaa attgcatttt gaagttcttc cctttccttc agaaataaat
      181 ggactaaagc aacagggctg gctctgacag gaagcgggga ttcaggactt caaatacaaa
      241 cattatgaaa aacaagcaac atctgcaaac agtaagtact tatttgtatt ttatggagtg
      301 tgcgcttggg attttgacag gtttttaaac agagcctata ttaggctcac acaaaggcga
      361 gaatgtccct ttttaaaaat acattatgct gctgaaaagc agtctaaatc tgcagtccaa
      421 gcctcaggtg agctctgacc cctcctaacc tggtctaaca aaacacacat gtggtgtttg
      481 caatagaaca gtttactgct actttctcaa ggtcaggaca agacagacac ttgagggtta
      541 gtattcagca agcttttccc tcagctacca gagtggcttt gaacttttcc cttt
//
LOCUS       KCOD01003450             500 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 383602pyr ultra-conserved element
            locus uce-3157, sequence.
ACCESSION   KCOD01003450
VERSION     KCOD01003450.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 500)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 500)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..500
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="383602pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>500
                     /note="ultra-conserved element locus uce-3157"
BASE COUNT          162 a           87 c           93 g          158 t
ORIGIN      
        1 tttcttgact tccaagaact tccaaggtct tttacaaatg aatgaaaaaa aaggctttgt
       61 atgtagaatc tgctgggtgc taatttgaca tggcaatgag atgaaagttg gattcatgct
      121 agtttcaaca tcagaggatt ggaatgcagc ctacttagca tagaagtcaa acaattcact
      181 ggcaatagat tgctttccac ttctagatct gctaaataaa tagaaaacta attaacagtg
      241 tagtatggca gatgtagcag gcttgaattt cattagagca ctggctgaga attgaaagaa
      301 tcacgaagtc tttatatgtc ctagtgtgta atgaatcctt cttactgtct tttccatggg
      361 acagacaaga tataatttgt gtgccctctg cataagaatt tcctgaataa gaatcaaaat
      421 ataagccctt gaaattacat ttcccaaaaa atagcttagc ttctaacagc agcatcacgt
      481 ttctttgcct tgtgcatttt
//
LOCUS       KCOD01003451             612 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 383709pyr ultra-conserved element
            locus uce-6548, sequence.
ACCESSION   KCOD01003451
VERSION     KCOD01003451.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 612)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 612)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="383709pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>612
                     /note="ultra-conserved element locus uce-6548"
BASE COUNT          178 a           96 c          119 g          219 t
ORIGIN      
        1 aatcttagcc tgtatttgcc ttaaactgga agaatggctg tgatttgctc ggcatgggga
       61 gttttgcagc atggttgaaa tgaagtctag attagtaatc acaaaatgat tattgtaact
      121 gaaggggagg gctggatcat aggaagagca gttttcatga agaggtgcag gaagatggcc
      181 actgtttcct tttttttgta ttctactgct ttgaattgtt ttctgtttct tcattgcatt
      241 tgcatccatt tattccagca ggattctcat ttgcacccat tctaatagtg ctgctgatct
      301 ctacataaag gattatttac atccatatgt agaagcaggc aatccccagg caagacctct
      361 caggtatttt tttaaggctt attatgtatc tataaaatac tattcttaag aaaaggtgtc
      421 gccagcagtt cgcctaaaag gaatgtgaaa tattgttttt gggtcatttg ttaaataaaa
      481 ataaagacat ccttttttaa gcttttatta ttctgttgat gaatgtgtct ttcctaatga
      541 gcaagctttt gatatgctcc tctaaaagct actatgataa aataaaatga actgtatttc
      601 aatttctgaa aa
//
LOCUS       KCOD01003452             499 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 383820pyr ultra-conserved element
            locus uce-4820, sequence.
ACCESSION   KCOD01003452
VERSION     KCOD01003452.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 499)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 499)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..499
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="383820pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>499
                     /note="ultra-conserved element locus uce-4820"
BASE COUNT          136 a          122 c          105 g          136 t
ORIGIN      
        1 ggaaattaag tttaaaatca tgaaccaata gtctttttcc aagtggagtt gtgaaagcta
       61 atttccaacc agctatgcct gttgtgtatc atctgtatga gacagatcac acgagaagct
      121 acgcattagc ctcacatccc tgtgagctta cctggcttgt aagttattcc tggggggaag
      181 aggaatccct gctgcgctgc agcagccgct gccagtgtcc gctggtcgtg tggaaaaatt
      241 gggatcatga gcggaggcat gtgaccctga acctgctaaa cagaagagag cctctgatca
      301 gaaatagcac aaatttgtct tgacaggtat ttctccagca ctgatagtgt tcttgcgttc
      361 acacagtccc acagaacctt tgccttaatg caatccctgc caaattcaca ttatcacatc
      421 aaagacctca caaacattgt tttccctcaa aaggtgtaac agtctgagtg aactgcgcct
      481 acttcttccc tctctatta
//
LOCUS       KCOD01003453             650 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 383929pyr ultra-conserved element
            locus uce-1545, sequence.
ACCESSION   KCOD01003453
VERSION     KCOD01003453.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 650)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 650)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="383929pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>650
                     /note="ultra-conserved element locus uce-1545"
BASE COUNT          167 a          129 c          133 g          221 t
ORIGIN      
        1 aaaattcttc actgttgtca aagtgttcgg aaagtgttaa catggttcat tcattttcag
       61 ctggaatacc atgttgaaaa catacttttg ctggtctgca gttgattgat gtacattact
      121 catatcaggc taatggcact ttattttcca acagtaacaa gtaatgagtg accttgagtg
      181 catattgttt tgctgagagg ttttgttgct ccgtgtactc tatgagcacc cccaaggaaa
      241 tgagggccct gtattggtgt ttttcagcaa acctcatttc tttcatggct ttctgtaaaa
      301 gaatttgata cagggataga agctaacctc agtgagtaaa tgaaatattg atccacacta
      361 ctctggcctt gccttcacct tgtcccaggg ctgtgagtta ctgacttttc cgttttggct
      421 gtaataggaa ttattacaac aggcctgtgc gagtaattac ttggcatggc aaaaaggagg
      481 gtccatcata tatttctgta gagacgttag tttccatcag gccagcagtc tgcttttttg
      541 gccctgtctt tcccactctt gattcaattc ctttaaccat cattaatcaa gttccttgtc
      601 agtagaagtt tatcaaaagt attaagtgag caaggttgca tggcctcctt
//
LOCUS       KCOD01003454             280 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 384038pyr ultra-conserved element
            locus uce-4309, sequence.
ACCESSION   KCOD01003454
VERSION     KCOD01003454.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 280)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 280)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..280
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="384038pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>280
                     /note="ultra-conserved element locus uce-4309"
BASE COUNT           83 a           65 c           66 g           66 t
ORIGIN      
        1 aaagcacatg aatttggggt tgaggttgga ataggagaca gttcagacct ggtttaatcc
       61 tgagaaagat gggtcctgag aagtactaac agtcatgctt cttttcctct tccccactgg
      121 agattctaaa cactgaacaa acaatagagg gtggcagtgc atcaaacagt cttgcttaca
      181 ttgcaacatt ggccggcgca gacaggcaac accgaggcgt tcgagaaaga acagggtagc
      241 caaatgccat ccttcttcca ccaagcacta tgtttccatc
//
LOCUS       KCOD01003455             559 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 384146pyr ultra-conserved element
            locus uce-4618, sequence.
ACCESSION   KCOD01003455
VERSION     KCOD01003455.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 559)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 559)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..559
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="384146pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>559
                     /note="ultra-conserved element locus uce-4618"
BASE COUNT          117 a          153 c          170 g          119 t
ORIGIN      
        1 tcgccccttg gtgagttacc ttggccgtta gttttaggtc gggacctcag aactgtagca
       61 tccctagaaa tgcagctccg ttcagaactg gtggaaatct ggcagtgtcc cctcttctcg
      121 gggcagtgac tcctgggcgt gtccagtaca ggtggggatg tgggagggct gtgctgggcg
      181 aagagcattg gcactaggcc ctgactaaga caagtgcccc agaagaagtg aatatgtcta
      241 ttgaccgatt gtaaaggtga gagaggatct ccaaagccca ttgtcactgc tgccatctga
      301 aagacagtaa agacagagtt cagtctgttg gagctgagca tgtttgtaca aactcaagca
      361 gagcggcggc acaggggcac ctgcggaggc ctctccttcc tcggccctca ctccaggact
      421 gtccggcgcc aggaccctgc cgagtccggt cccaccaggc cagggtgggg ttgtgctgct
      481 gccgctgggg tgggatcccc tctgcaacca ctgtcgttga ttttaaaagg agcccctaga
      541 gcagacccgg cacagcccc
//
LOCUS       KCOD01003456             643 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 384257pyr ultra-conserved element
            locus uce-7063, sequence.
ACCESSION   KCOD01003456
VERSION     KCOD01003456.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 643)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 643)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="384257pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>643
                     /note="ultra-conserved element locus uce-7063"
BASE COUNT          174 a          123 c          151 g          195 t
ORIGIN      
        1 tagctgtgga agccacagaa cttttaggga cttggcttca tttctttttt tctttaaccc
       61 tttttctttg taccctggag gctgtgaagc agggggaaga gaaagcacgc aaggagaccg
      121 acagacaagt catgcttgtt tccagaccct caacaacaga actgagaggc agaaaggagc
      181 cagttgtaat tcataccgag ttgtaggctt tgtgtgatga aagcgacaga gcgctgcctg
      241 ggagattgct ttgctgcact ccacgaagca gatttgaaac tgtcgtggac cactttagat
      301 gagagttgga ttatggaatg acctgctatg tctgtgtcat attgttctgc gcagggtgca
      361 ttatactctg ctaactaggt gttcagtacc aaataagaga ggtatcctag atgtgatctg
      421 tcagctgtgt ctcatatttt tatattggtt aaaatatgaa actgaaactg tgatgaaaga
      481 ggacagagca gttggatgcc ttgtatgtta acagtaaatc tcgtactgag ttttatttaa
      541 ttactttgag agctgtagca ttacctataa ttgaccccct aaaaatttgg ctatgcgagt
      601 atgtgcctgt aacccatacc gcttcatttc tttccctaac aac
//
LOCUS       KCOD01003457             857 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 384363pyr ultra-conserved element
            locus uce-4837, sequence.
ACCESSION   KCOD01003457
VERSION     KCOD01003457.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 857)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 857)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..857
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="384363pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>857
                     /note="ultra-conserved element locus uce-4837"
BASE COUNT          275 a          160 c          170 g          252 t
ORIGIN      
        1 gaggctctga agagttccac ggtagcacgg ctttttaaca tcctgctcag tagttaaagg
       61 gtattcagcc tgatctgcct ttgttgatag ctgatattat ttgacatttt aacaaggttc
      121 tgtatttgca gaagcatctt atggcaccac tttcaacatc agagtctatc acaaaaaaca
      181 tttcaactgt tttgcaaaca aactttcttc cagttaataa ttaaacagag gaacagcttg
      241 cggtatatgc ttggaactaa ttttactata tatagttgga aatgacaaga gcacatgaag
      301 atgtgactga agcctggtag catttaaata ctcagtactt cctctgttac cttgacttgt
      361 gtaaagttgg ttcccaaggt aaaaactaag tggtctgctg gcatatggta taacctccat
      421 ttgagcgcta aaagctggat actgtttttg tgaaacagat gttgttgagt gcagcaatgc
      481 acaactgact ctatctaaca gctgggaatc cttcgtgacc catatagcta gaaataaaca
      541 tggtcctatg cttggcaaaa gtgtaaggaa gcaaattttc atttgttaag ggcttatcaa
      601 aatgaagaat aaatgttttt agccataaac tgattttatt cacaagagta atctttccag
      661 cagcttatgc gatggcctca taatattaca ggcacccttt gccagatgaa ggctgcagtt
      721 gcactgacat atagtgcaga tggaaaataa acatctgcct caatcaagag agaagaccaa
      781 agacaaggtt gacgaatatt atctggcatg actatctttg caggaaagca tataaatgct
      841 acaggaccaa aaccact
//
LOCUS       KCOD01003458             791 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 384477pyr ultra-conserved element
            locus uce-1281, sequence.
ACCESSION   KCOD01003458
VERSION     KCOD01003458.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 791)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 791)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..791
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="384477pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>791
                     /note="ultra-conserved element locus uce-1281"
BASE COUNT          228 a          162 c          123 g          278 t
ORIGIN      
        1 tgccattaca ttttggtctt ttaaatcttg gttctaaata ttcatttaat tagagagcac
       61 tgagcactgg gactattttc tgacagaggc tcttctaaag gagacgtgtg gaaaatgctc
      121 tgagagtgca tcagctgaga atttcgactc atgtaaaagg tattctagct ctctcattgc
      181 taggtataat tttaatatac tatattgagc agtggtgtat tgctaggaat ttaacaatac
      241 ctggaataaa taatgtcgcc tggggcaaca tctgccactt atgcattaat tctgcccctg
      301 tttgaacact ctacaacata tgcacttctc ttttgtctgt tatcctagag ttgtgttatt
      361 cccaaatatt gacatcatct acttttatca gcactaactg ctctgaacct tcctagtctc
      421 atgctcagct ctatttcttt ctattgatta tcttcctcac tccagcaggt agctagccag
      481 cgaggctgtc ctgagaaata gcttccaatg actttatacg cacaatttac acggaattgt
      541 ttaaagaaga tattagcctc aatacaaatc agtgaacctc atttagtcaa tactgcacaa
      601 ttcagctgtt ggcaccctgt cacatgttag tctttaaagt caactaccat acccaatctg
      661 cacattagcc atagtattta gtttcatatt aaaatgaggc tagtttttca cttttctttt
      721 tgaaatctat tcaatatatt ttctacatca cctcattgaa ccatatgata gtaatataat
      781 tttaagtata a
//
LOCUS       KCOD01003459             455 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 384589pyr ultra-conserved element
            locus uce-6226, sequence.
ACCESSION   KCOD01003459
VERSION     KCOD01003459.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 455)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 455)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..455
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="384589pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>455
                     /note="ultra-conserved element locus uce-6226"
BASE COUNT          171 a           93 c           82 g          109 t
ORIGIN      
        1 cttcccaggt atacttgctg cctgaaatat gaggaggaaa ctcaagctgg catatcagca
       61 aaagcagaag acaccagttt cttccaagca cagcgcaggg agcaattatg cacaaaaatc
      121 tctctgatac ataatcgagt gcaggccaat ggcacacaag ccatcctatc ccatggtgtc
      181 tgggcataaa aaaatgaata tgagatgact actatgtgtc tgtatatata gcatagcaca
      241 gcagtgactg cacagcactt tctatattcc tactgtgtac taggcaaaga tttttcagtt
      301 catacatcat tcacaacagg gattccacaa agccagtaca tatcctttac acaaagaaaa
      361 aagaatagat ttagaaaaaa aatattctga aagtatatct gctggatgag tagtacaata
      421 cacacagctt aacaagaagc aaaataaata agtaa
//
LOCUS       KCOD01003460             522 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 384700pyr ultra-conserved element
            locus uce-3223, sequence.
ACCESSION   KCOD01003460
VERSION     KCOD01003460.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 522)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 522)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="384700pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>522
                     /note="ultra-conserved element locus uce-3223"
BASE COUNT          187 a           98 c           77 g          160 t
ORIGIN      
        1 agatgctgga aaaatatgtg aaccagttat ccgtatacag aagtacatga aacgatacta
       61 cagagtggca tgattatatc cgggtgcctc tgctataaaa agcatttgta ttacccttac
      121 ttctctgaat aaattcaaat gacagcccca tttcatttct tcattcagtc tggaggccag
      181 atggcattag aatcatttac ttcaccttgt tgtgcttaat tactacaatc aacacactat
      241 tttccaaatt aatcataaca aagtaatttc attagtaaca cagcaggctg ttgaattatt
      301 agcatcataa cagtttgcaa acaattaaac tttatttgaa ccttaaaaat ttgcagagta
      361 gaacattatt ataagatcta atggcagtac catacaaatc cagaacacag caaataatca
      421 agtaaaacgc atgtgagagt taaaatttgc tctcttgctg ttcacaagtg aacaaagaaa
      481 attagcatct tctaccgtat taactgagat tttcttagcc aa
//
LOCUS       KCOD01003461             635 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 384808pyr ultra-conserved element
            locus uce-6214, sequence.
ACCESSION   KCOD01003461
VERSION     KCOD01003461.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 635)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 635)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..635
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="384808pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>635
                     /note="ultra-conserved element locus uce-6214"
BASE COUNT          188 a          109 c          142 g          196 t
ORIGIN      
        1 acaaccacag ggcatctgta cctgtaggca gggatagcac caaatgctgg catgtctatc
       61 catgcagcta aaaagaagca actacagtgg aaatgcacct actgtatgtg aatttttttt
      121 ttctatcagt ctaaccttct gtgttgatac atgaatgctg gtacccactt agagggatgc
      181 cagatgatca gtgcagaatg aaggtcccag gagaaaggct cacgtggttt tctctgcccc
      241 gtgacgtcac tagcagatgg catgggtacc agctctggca gttggcatca atgtcacttt
      301 ttagagatca atgagatagt gcagatatac acagatctag actccaggag acgatgcggc
      361 attcagactg aaaagatttg gaaggaaaac tgattgttga atgaaataaa aagctaaggt
      421 aatacaaata aagatatatt tcagttggtg ttgggtgtgc atgcaagtgt ttaaagatac
      481 agtaacattg tcttgtattt tatgtatgct atttactgtc taataactcc taacatttta
      541 ttcttctgat gcaattacaa actttcattg cttttatgta atactgcaag tgtgtaatac
      601 tgatagagtt agtctttggc tggggttttt gttta
//
LOCUS       KCOD01003462             741 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 384913pyr ultra-conserved element
            locus uce-1192, sequence.
ACCESSION   KCOD01003462
VERSION     KCOD01003462.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 741)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 741)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..741
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="384913pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>741
                     /note="ultra-conserved element locus uce-1192"
BASE COUNT          213 a          168 c          128 g          232 t
ORIGIN      
        1 cccttgaaaa cttaatggct ctgttgtata aacatcctta ttgcagaact aatggcctaa
       61 aacctgttgt aattacttcc tacctactat cagcaggtag ctgaaaaatt tatacttatc
      121 acagagaaca caatttggtt attttaccag aactaaataa aatgcaaaat gtaattacta
      181 ttatcttctg cctccatagc ctatgctttc atcacttggt tttttgtttg tttgtttata
      241 aaattaatca cagctagcag ggtagaaatc actctgagcc tcatgaatga catccaagag
      301 atgggaaagg attagttctc agttgctgcc agttatagca ccaggtggct ttttctgcag
      361 tgaaggtgtt accgataatc ccattacatt ggtactaaat cttgcagaca tcaaaattat
      421 caccaaggtt ccttttcatc ccatcctttc caaatgactg gaagtcgctt cacctgaaag
      481 aagtcaaatc cacatgcagc tgctgtttta gcagccagcg gactccctga gaatgccaat
      541 cgtgatccaa tttcgctgtg ctggtggccc cctattccct gtccaataat acatctgtta
      601 aaaaatccta cagctacaaa tcaagtttaa tcctaccagg gacctcatgt tggtcttgtc
      661 ttccaaaaag gcagcaggtt ttgctgtcta tctctgctag tgtctgggga atactcttta
      721 aatcccagct ctacttagaa g
//
LOCUS       KCOD01003463             643 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 385131pyr ultra-conserved element
            locus uce-545, sequence.
ACCESSION   KCOD01003463
VERSION     KCOD01003463.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 643)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 643)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="385131pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>643
                     /note="ultra-conserved element locus uce-545"
BASE COUNT          222 a          116 c          107 g          198 t
ORIGIN      
        1 ccccgttccc gtggtgagaa aggtgatggt atgtttatca cgcagccaag aaataaatgg
       61 gagccattac aaaggtgtat aattcagcaa ttacagttat ttgttttttc tgacaccccc
      121 tgcaaacagt tatcgcttca gtcaaacata atcaaattat ttttcctggt actgtacatt
      181 aacagggcaa ataaaaggga aaatagtgca gtcccttgta ataaagaaaa cagcagcaaa
      241 ctattaatgc tctttgaaaa gagtagtttt aacaaagtaa gcaagaatca ttttctttgg
      301 ttgagtgttg attccccagt gtgctctcag taagtaatta gaatggccca gtgaatgtca
      361 gcatcagctt gtttattctc attattttat cattttaaaa accctctagg tgatgagaca
      421 tgcagtatag aacataatta ccattattag catactaatt ggacacaaaa ataggccaac
      481 tacaaggtag ccaactgaat aatttcacat taatcaaaca ccatagtgaa taagcctatt
      541 gttaaattga cagctacaat aattggcaat atttcgctgc gaaatataag aaattccttg
      601 taatatctct gccacgttat ataatttagt aatttcccac att
//
LOCUS       KCOD01003464             481 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 385237pyr ultra-conserved element
            locus uce-7164, sequence.
ACCESSION   KCOD01003464
VERSION     KCOD01003464.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 481)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 481)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..481
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="385237pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>481
                     /note="ultra-conserved element locus uce-7164"
BASE COUNT          157 a           84 c          124 g          116 t
ORIGIN      
        1 atgcaatgag aaatatgcta atttactcag cgaggcaagg cacatttggt ggattagcta
       61 aaataacaga ggggaaaagc tggggtaagc aggctgaagc cctgtgtgtg gccaaggcag
      121 caggaagcaa ggcagagaga aagagaatga acccaacaac acaacagtgg aacaggcagc
      181 tggcctgaga tgctaattca gcgctttaac aaatcaatgc cacttgaaaa gtacaatgcg
      241 agccctcact gggtagatgt caggggactg agaaaatgca ttctcaagta tttcacatta
      301 agagggaata atgtgttaat ttataactct tcaccctata cacttggatt atccatctgt
      361 gtcagtgatt tgacttctta aatttatcaa aaacatgcgc aaagggaggc atcttctgct
      421 aaagctttgg gaaatagcga ttcagaaaca gtattttgtt gttgggtgga tggctggagg
      481 g
//
LOCUS       KCOD01003465             508 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 385341pyr ultra-conserved element
            locus uce-3940, sequence.
ACCESSION   KCOD01003465
VERSION     KCOD01003465.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 508)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 508)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..508
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="385341pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>508
                     /note="ultra-conserved element locus uce-3940"
BASE COUNT          148 a          119 c          113 g          128 t
ORIGIN      
        1 aaaagaaagg gagagagaca ttttctttca cacaagccct cagaattaca gttcatgaac
       61 tattcagtaa actgaccggc atgaacctcc cttcaacggc ctaatctaag gggtggatct
      121 atgtgttttg ttgcttgtca aaaacaatca ctgctcggcc cattacattt acagcacgtc
      181 gtcctttaat tggtgtaaca cactgagggc tgaaaggaag aaagtcctac aaaagccccc
      241 gagtgaatga accctgactc acacaaaaat actcttcaga agttcagagc tgggcactaa
      301 caagggaggt agagagttag tttgaaaagg ggttaagttc agaaatgtgc caccttgaag
      361 accctcccat caaagccatg atagcattga caagatgtag ggaaaaaagt taatattccg
      421 gcctttcggg tttgaagggg actggagatt cttccccgct ccccttcccg gccttaccct
      481 tttcacttcg gggccgttct cattgtgt
//
LOCUS       KCOD01003466             454 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 385448pyr ultra-conserved element
            locus uce-6406, sequence.
ACCESSION   KCOD01003466
VERSION     KCOD01003466.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 454)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 454)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="385448pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>454
                     /note="ultra-conserved element locus uce-6406"
BASE COUNT          169 a           87 c           78 g          120 t
ORIGIN      
        1 tattgcttcc tacatcaata aaaagtgtac tttacacaaa gaaagaaaac ctgcttaaga
       61 aaatgctagc taaagttact aaacattcta acaattatca taaaaatgct agaaaagaaa
      121 atatagatat gttaagcaat cctaaaatct tcttaaacca cacattgtgc ttgcctacag
      181 agaattttta agatgaaaaa tagaccttga gggtcttaga caagcctgag gcaatataaa
      241 gaaaaaggtc aaacactctg ctaaaaagga ccgttatctt cagaacaaca acttatcagc
      301 cagcttgcag ccctgcttat ttacagttat tggtcccaga ggaagtgcac ttcagcgcag
      361 ggcgcgatta ctttgtaatg agtttgccag aaatggtaaa ggaaactaat ttgtaacaat
      421 gtgctgttcc cggcacatga actttctcag acac
//
LOCUS       KCOD01003467             992 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 385550pyr ultra-conserved element
            locus uce-864, sequence.
ACCESSION   KCOD01003467
VERSION     KCOD01003467.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 992)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 992)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..992
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="385550pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>992
                     /note="ultra-conserved element locus uce-864"
BASE COUNT          347 a          180 c          186 g          279 t
ORIGIN      
        1 ttgaagtggt agcaaactga gtttgccctt tgctttaacg tacctaggaa tcctgatcta
       61 tattcctgat tgttattgaa ttttctagat ttcattataa aatcaataac cgttgcacat
      121 ggtaaaatag tttacaagaa ctgcaacata ttgtggactt ctgaaaacat actgagctca
      181 ctgaagccac ccaggcagcc aattaggaga aaacatctat taaggaaaaa cagggcagtc
      241 ccattgactg ctattgattt tctcagccct gtgaaaagac aatcaattag ataaagaagg
      301 ctaatgttac agctgcaatt taataacccc taaagaaagg aggagggcta ttgattcctg
      361 acatggaatg cagagcttat tgaaatatac tgaacttcac ctgtcttata atcaggcctc
      421 gaggaaagaa ctcaatgtaa cttgtggcat agaatctcaa ctattaaact ggcttggtga
      481 tgtcagacct aagagatgca aatgaaacaa aagtttagag gaaacacaag cccagggttg
      541 aatacttaat cacaggagct attgaaagac actgttttgg tgaaggttgt ttctctcata
      601 cagaaagcac cagagtacca cctgtcattt tcaaaagcaa agtcagtttt gccaaccacc
      661 cgtgaatgac aaataaagct ttatatgaaa cacaagggca tattatgtgc tattgtgtgt
      721 tctgctaagt gctaatttat ctggcttgtt ctcttcagca aacacacgca cagacacatg
      781 aaataatcca tctaattatg tagctattta ggaaaaaaac aaagcaaggt gtttttgtct
      841 gaaacagaag gtacatgata caacaaaggt ttcatcaaaa cctaacacag ttaatgaaaa
      901 taaatgaagt ggggtagctg taacaatttt cgaacaaata aactttttcc agttttatat
      961 ttagggtaga cccagctgcc tttcataaat ag
//
LOCUS       KCOD01003468             601 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 385655pyr ultra-conserved element
            locus uce-2259, sequence.
ACCESSION   KCOD01003468
VERSION     KCOD01003468.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 601)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="385655pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>601
                     /note="ultra-conserved element locus uce-2259"
BASE COUNT          193 a          111 c          120 g          177 t
ORIGIN      
        1 agagctagta aaatgtgtta gttacaaaga caagatttga gaggggcaga gatgtaaaca
       61 ttttttatca tttatataaa aagcagagtg aaacagaagg gtacaggtca ttatgtttct
      121 taccttttaa aatggaatga agtaatgtta ttaaccccaa ataatgttct gaaaggctat
      181 cctagcagaa tgtacatcag ctgttagatt acttcattcc tccacagcag ttgttcatct
      241 gaaaatagct ttcaaatgaa aagaggcaac tacaaaagga ttagttacca taggcagcat
      301 gatactccca caagattatt tatggcaaaa cacccagaga caaagctgta acagagttaa
      361 actctatgta ttagggaggg ctagaggaca ttgcatatgc agcaagctgg gttcagtgct
      421 ataccagttc tgtgtatttc atccataatg gctgatgctt gctctttcct ctctttgacc
      481 agggcagaat ctgataacat tttctgatat gattttcctc gctgcttttt acattgttga
      541 gccagcacgc acaattggcc aactttcatt tccagcagcc tgtaaaatgg ccgaacagtg
      601 a
//
LOCUS       KCOD01003469             547 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 385765pyr ultra-conserved element
            locus uce-7055, sequence.
ACCESSION   KCOD01003469
VERSION     KCOD01003469.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 547)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 547)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..547
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="385765pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>547
                     /note="ultra-conserved element locus uce-7055"
BASE COUNT          170 a          142 c          137 g           98 t
ORIGIN      
        1 agacactcag ccaggactgc ctcatactgc acagccatgg gggtctgggg cacagagttg
       61 atgggacagg aacaccagga atgcacaggg aagctatgga gagaaatcat caccgaggcc
      121 gcgccagctc gggccggagg gacccggcaa gcagccagga caggaaagcc accattccat
      181 tcccagcgtt cacagacact cctactgcca gcaagtacct taatgaatgt ttccatattg
      241 ccgttaaaga gtttatgatt atagactgag agaggcctag gtctcctcat tttctgtggc
      301 ttagggggaa gacatggggg cctgggagaa aatggaacaa aataaatcaa caaaacacca
      361 aatgcaatga cagggtgaga tctcacaggt taaaactgag aataaacaga aaaatgcttc
      421 tgtgaggatt cgacgtgtca cacaccctgc aaccactcac actggtgtgt cccacatgga
      481 caccactcca gcaggaaacc aaaggtttaa cacctgcctc actccctcag cctgaaaagg
      541 caccaag
//
LOCUS       KCOD01003470             876 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 385863pyr ultra-conserved element
            locus uce-591, sequence.
ACCESSION   KCOD01003470
VERSION     KCOD01003470.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 876)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 876)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..876
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="385863pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>876
                     /note="ultra-conserved element locus uce-591"
BASE COUNT          302 a          156 c          206 g          212 t
ORIGIN      
        1 agattactaa tgggctctcc aataaaacaa atacaaatgc aagacaaaag acgaaacaaa
       61 tgagaagtga aggaaagcga accggaatta gcatttcatc agaaataatt atgaacaggc
      121 aatgttgagg ggagcaaggt gggccacaaa gacagagact attttgaacc aatttgattt
      181 acaatgcagc aaatatgcaa cacttgaagc tgtgctcctt ccattgaaat aaaattagtg
      241 gattgtttgg gtgggcaact cacgtaaaag ttcagtgaca aaaagactta atggggaaaa
      301 taagacagaa aacttgaaaa aaaacaatac accgtctata aatttaatta tatcaaaggc
      361 aggtaataaa atacatttct ctctttctat tcaggcagtg aggcataaac tgttgggaca
      421 taccgctcgg ggccactgct gtctgggact gaaacactgg cattgtactg cattggtcat
      481 tggcgttcgt ggatgttggc attgggcatg ggtattcaat cggaagttgt caagtatggt
      541 acccgtttgg caacgagcac atttttgggc atagccaacc agggttttca catgggcgtt
      601 caggggcgga tgggccaacg tcatggtggg caacgcaggg gcaagtcgat ccagtacatg
      661 ggcaacggag atatatggcc aaaaaaacaa ggagagggaa aagggggaaa agcaataaat
      721 tttaatttaa tacaaactat actcattact ctcaattaat gaaacaagct taagttgttc
      781 tgaagactaa cacaataacg gattgctaca ccgactgtgc cctaccagta tggactttag
      841 tcacttgatc tgactacaat gatgcttcag tagcag
//
LOCUS       KCOD01003471             673 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 386069pyr ultra-conserved element
            locus uce-6774, sequence.
ACCESSION   KCOD01003471
VERSION     KCOD01003471.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 673)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 673)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..673
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="386069pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>673
                     /note="ultra-conserved element locus uce-6774"
BASE COUNT          208 a          112 c          119 g          234 t
ORIGIN      
        1 gtgactgtag gagacctcag ctgtgttttt caccttttga tcaaaagctg agtgtaacag
       61 agataaagaa cttgcatgac atttttgaaa tggaagcaaa acatgcagta ttgcctggca
      121 atgttgaaaa gaaatatgta agattaaaac aagcaagtcc aagtgtgttt cttcagtaga
      181 taatacatat atacttaatt taatgcagca gctttggttg gtctatttct catttttttt
      241 taaagcatat aaattccaac catgttttgt gtgaagggtc tcagtgcata ctgacattgt
      301 gagtgtcagc tccagatcac tttaatcaga gagtggatat gcatgataaa acggataagg
      361 gactttaatc aaaaaatccg ctggtctgga aacgtgacgc actccgccaa acacacttca
      421 tcccactttt cttgtgccac tgccaagatt tttatttcat gaatatgcat tggacatgat
      481 attacattaa aatgtgacat tgttgtgtag tggtagggat ttagaattag aataaataaa
      541 taaatacttc tgtaaagttt ttgtaattga acattagtat catgttgtga ttttacatat
      601 atttattcac ctaccccctc cttctctcca aatttatttt tgaattgcat attgcattca
      661 ttcctttctg ctt
//
LOCUS       KCOD01003472             632 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 386180pyr ultra-conserved element
            locus uce-2060, sequence.
ACCESSION   KCOD01003472
VERSION     KCOD01003472.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 632)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 632)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="386180pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>632
                     /note="ultra-conserved element locus uce-2060"
BASE COUNT          172 a          125 c          138 g          197 t
ORIGIN      
        1 ggcttggggt aggtttggtg ccgttgttta ctccccactg gaacagttta atgaaacaat
       61 ttgtccttat taagtcgaaa atagaaatac acctctcccc cgttggagac gtaaccggaa
      121 tggcacaagg ctggcgagtt ttattatctt ggtctcagct taaaatacta agaggcgctt
      181 ctttaagaaa gtttaagaga agttctataa accatgtcta tatataatcc cttttgtaag
      241 catctaggaa actgcaggac ggaaaggttg cctgccagac ctcagaaagc aaatactaat
      301 tcagcagtct agtcactctg tcaaacattt agtgtatcag ggttgattgt tccctggtag
      361 gtatagctct ggtatatccg ccaggccttt tgtcatgtta actgcaaccg atcaatggat
      421 tgaggtcagg acttctgatg taggtgcaag cttagaggga aaaaagtctc aaagattcat
      481 tttttctcgt ctggtagcac tccggtcact tattttttct cagttagcct ctgctgctct
      541 aaagtggata ttgatcagtg ctttaatgca aacctgtcaa attaattttg cagagctggg
      601 atatgactgg cctaaaattg cttctacatc tg
//
LOCUS       KCOD01003473             579 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 386288pyr ultra-conserved element
            locus uce-7888, sequence.
ACCESSION   KCOD01003473
VERSION     KCOD01003473.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 579)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 579)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..579
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="386288pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>579
                     /note="ultra-conserved element locus uce-7888"
BASE COUNT          164 a          137 c          125 g          153 t
ORIGIN      
        1 ggggaacgaa agagcaaaat aaatgtaaac actctcctca cgaaacggtt aaaagcacaa
       61 aattaaaaga taaagccttt aaaagacttt acagtgattg ataagacagt ggtcactcca
      121 gtgcttcctc gcagtccctg ctaattactg gcaggccatt gaaggcagcg ggcacagctg
      181 tgcgggcggg cgcgccgggc catcagtcgc tcccggtatt gattactgag caattccagc
      241 cgatcgggtg ctggcgcttt agagacaatg tgcttccctc agaaaacctg taatgagcag
      301 ttcctataca agactacatt ctgctgacat cagatctctg cactaagata gtacacaggt
      361 caatacatat tggatttcca aaatgctggg gtcttaatgt cagggcctct ctttttctcc
      421 cactcctgcc attagctatt actgggttca cattctttaa tgccatacag gagggggaaa
      481 aaatctcctc cattagtctg atttattctt caaatatgcc atgacaaatt gctttaacac
      541 cagacttatt aaattcttgt acactcggag ttgcggggc
//
LOCUS       KCOD01003474             658 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 386397pyr ultra-conserved element
            locus uce-5419, sequence.
ACCESSION   KCOD01003474
VERSION     KCOD01003474.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 658)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 658)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..658
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="386397pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>658
                     /note="ultra-conserved element locus uce-5419"
BASE COUNT          191 a          116 c          145 g          206 t
ORIGIN      
        1 aatgtgattt tctatgactt taccttcctt tacttctgga gcagagcttt ttgtcatgga
       61 caaagagagg gaaacattag aatgggtggg ggtaaggaac ccttccctat gtgttttaac
      121 tcaaatccta ggtggacttt cagctattca acctttctta acacttgtgt gagcatttcc
      181 ctgttgatca tccctcctaa tctctctgta aggttatgtt gtttcagtta tgtttttaaa
      241 gttaaatgac tgaaagtact gaactaaaac ttgctggtga cactgacttt ttaccaccta
      301 aaattggcag tgatcaccag accagaaatg gaaattggca ggtaccactg gatgtacagg
      361 agttcaaggc cacaccggta ccatcatgtg ccagcattgc gaggcaatat tagtcctttg
      421 gggattcaag gtaaataaag ggctgggtga aagggaaata aagagttcag aaatggtagt
      481 agcataaact taatgctttg cagtagtcct aacaattttg tttgttaagg cggagtctac
      541 ttcacttgac ataaatttga atttcttgtt aatgcttgaa agacaaaaat gggtagtgag
      601 ggaccctttt aactgtgctc ccaattgctt caagactgtt tacggatgag atgaaata
//
LOCUS       KCOD01003475             650 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 386507pyr ultra-conserved element
            locus uce-7409, sequence.
ACCESSION   KCOD01003475
VERSION     KCOD01003475.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 650)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 650)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="386507pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>650
                     /note="ultra-conserved element locus uce-7409"
BASE COUNT          193 a          130 c          129 g          198 t
ORIGIN      
        1 aggctgtgtg ctgtgtttgg ggggatctac tgcctccgtc acgccgtgcg ctgcctggtg
       61 ctggacagag cctcgggacg gtaagggtga catcaggaac cttctgttta tacacaaaac
      121 acaggtgaaa aatgtgttaa gtcaatttag attcttcaga gatcctcctt gatattaata
      181 acatatcaac cttgattaaa agtaatttgt gtataggtcc tccagaacaa ggaaagtggc
      241 tctagaatat agaaactaaa ttaatttccc tgtgatatta ctacagctcc tgatcaccca
      301 agcttggaag acaaatcatt tcagctgccg gggggctggt gatgagtgat gttagttttc
      361 cttgtggcct tacctactct aattgatttt catcagatga caacaaagcc ctctgttatt
      421 gcatttttaa aaatggagct cacctaaaga ctcatcagat taatctttgc tgataatgca
      481 tgtcactcca agagaaaaga ctttaatgag tttttaggta gattgttgtc ataaactatg
      541 ctgccctctt actccagaat aaattctttt acaaaaatat caggcctgtt ttaaagttga
      601 gctaagaaaa atcaacctcc atagtgacat cacacctctg taaattgtca
//
LOCUS       KCOD01003476             507 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 386621pyr ultra-conserved element
            locus uce-5996, sequence.
ACCESSION   KCOD01003476
VERSION     KCOD01003476.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 507)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 507)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..507
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="386621pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>507
                     /note="ultra-conserved element locus uce-5996"
BASE COUNT          172 a           88 c          121 g          126 t
ORIGIN      
        1 gaggggcggg gggctggcag tgtctgacaa ctgaaacaga tgatgccgca caccacctat
       61 gtaaacagaa ataggcgctg gggctgatgg agcacagaga tatgaccctg cccatagagc
      121 cgctgagtct agactccaga tgtgttctca ctgttaccag gccaattcag atccaactgg
      181 taaatatttc taccagatga cagtgggctc agttacagaa atgaggacaa aggacaaaat
      241 aggcagaaaa tgagtactgg gcattactgc tgcttagaaa aatattctgc atagttttgg
      301 agatgttaag gggcaattat ttaaatagat catatacatt ctttttacca tgttcagctg
      361 aaaaagttcc aaggcaaact gaaggctatt taggcaaatt agtcacttaa aatgaactga
      421 aacagaggtc tgtaaaggat gaaataaaat ttattttacc atatggacat aaagaaatga
      481 ggtgttgata acctcaggct ggtaaat
//
LOCUS       KCOD01003477             605 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 386724pyr ultra-conserved element
            locus uce-1830, sequence.
ACCESSION   KCOD01003477
VERSION     KCOD01003477.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 605)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 605)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..605
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="386724pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>605
                     /note="ultra-conserved element locus uce-1830"
BASE COUNT          202 a          110 c          118 g          175 t
ORIGIN      
        1 accaagtaga tttaattgtg gagtttccat taaggaagga gcatgcagac acacttgcag
       61 aacatcttca gggtgtacta catagctaca cagccataaa ttgcccgtgg atcaaagatc
      121 agggcttaaa tctgagctag gctacagtac acagaaaata aacgatggaa ccatcttgct
      181 actgcctgtt tcacttaaag atgataagaa aacattatca cattatttta aggtaaatcc
      241 agcatttcca gagctgattg aggcaagaat tagacagtgt ttaggggatt atgaaaaaca
      301 gcttcctcta caggtcaaca gctaatcaga attctcatga gattttccaa agatgcctta
      361 tgaataattt caccaaaggc acaaaaacgg gcacattatt tagagagagc cttttgatgt
      421 attttctctg aataagcacg ggtattcgag gatttctgct agttcagagc aacagggacc
      481 aacttattaa atgttcctgc tgcaatgcct gcaagctagc tgagattaat atcagcataa
      541 cctgttactt aattcattat ggggatacag gctaatttga tttgatatta ttttaataaa
      601 gttct
//
LOCUS       KCOD01003478             701 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 386832pyr ultra-conserved element
            locus uce-2274, sequence.
ACCESSION   KCOD01003478
VERSION     KCOD01003478.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 701)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 701)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..701
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="386832pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>701
                     /note="ultra-conserved element locus uce-2274"
BASE COUNT          221 a          123 c          126 g          231 t
ORIGIN      
        1 ttaataaaag gatatcgccc cctctcttat tgataaagtt atgactgttt aaattcatct
       61 caattatact agaaggaact ctccattctt ttagagaaac caattatttc cattcatttt
      121 gaaatactaa aactgaagag tttcaaatgg gaataataca aattacatgc tttaaggtca
      181 tagtctgtag taacaattct gaatttggaa ggaaatgtga ggtatgatat ccaattacta
      241 ttcttgcctc atcccctaat tttgggcata tgactacatt agtattgggc aggtatagaa
      301 aatgggaaag ttaacattta tgagagatta ccatcagggt aatattgctg gttcatgcct
      361 tctggaggac cttgtccacc atgactgtat tggtccccat aatagtcttc ctggcctgag
      421 tactgctgtg gtgggcctga aaaaccacaa ccagtcaata cgtaaataac ttggcctgct
      481 aatttctgag tttagtatga gaaatatatc tcaatgtatt ccccacccat actgttgcat
      541 tacagtgtaa tctggtttag ttgtaaatgt atctatctac gtatacaaat acacgtttgg
      601 ctgcactaga ctgagaccaa acttaagttt tgagctcatt ttaggaatat gtgtataaca
      661 gaccaaggtg ttaataaaat tattccttgt tgaaaaggac t
//
LOCUS       KCOD01003479             579 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 386942pyr ultra-conserved element
            locus uce-7709, sequence.
ACCESSION   KCOD01003479
VERSION     KCOD01003479.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 579)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 579)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..579
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="386942pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>579
                     /note="ultra-conserved element locus uce-7709"
BASE COUNT          185 a          109 c           85 g          200 t
ORIGIN      
        1 cccaaagcca tctgcagttt aacttttctg aaagttagat acacacatca cactgatcga
       61 ttttctctct ctaagcagtg aagcttattt taaaaatact gagtatgata cctaccacac
      121 tctattcaca tgactttaca gcatttttca ttactaatga aaaacatgag gatttgtgaa
      181 agatcaggtt agccaaaaat aaaataacaa tcaacacaaa atattccaag tagtcttctt
      241 accttgttct tttatctgac gaatttgctt cacagtttct ttcaagattg cacatttgtc
      301 aggtttaaag ttaaagttgt caatatcatt aaaatttgca aaaatcagct ctgcaagttc
      361 ttctatgtat ttattctctt gctcacgatt gcgtttctca gtgcttcttt tagggctgaa
      421 aaatgctgtt ttaaatgtcg gtttccttgc cttctggcca gctcaaagat taaaaaggtt
      481 taacagtagt ttaacgagaa caaaatataa ctttttctca agctctggaa caaggttata
      541 aaagatacta cccagcagtc atgtttttgt ttcagaaga
//
LOCUS       KCOD01003480             449 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 387046pyr ultra-conserved element
            locus uce-1846, sequence.
ACCESSION   KCOD01003480
VERSION     KCOD01003480.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 449)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 449)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..449
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="387046pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>449
                     /note="ultra-conserved element locus uce-1846"
BASE COUNT          146 a           64 c           90 g          149 t
ORIGIN      
        1 aatcaattac tgatgttaca atatgagaaa gaaactggtg gggaatgggg taataaaaaa
       61 tacctataga tttatctgct tcttttttct atttaaacaa atagtcttca agtctgtgaa
      121 tgctgtgttg agacatgctc tgaataataa gcatcataaa atctaatcag atttataaga
      181 ggaattgatt gttgtggcag gaggagaggg tggaaaataa gctgaaattt aagtgttaat
      241 ttttatgcta atccacagtg gcttcatatg aagcaatttt gttctgtgcc acaaatataa
      301 aattgtccct tgcagagaaa tgtcagcttg ctagacctga aagcagtaat ttattaggta
      361 tgtttctatt agtatgtgtc acagttgtta gcaggctata cacacaatgg tgcttcatac
      421 ttatcctcca agtctcagaa tgtttcagc
//
LOCUS       KCOD01003481             494 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 387153pyr ultra-conserved element
            locus uce-5048, sequence.
ACCESSION   KCOD01003481
VERSION     KCOD01003481.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 494)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 494)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..494
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="387153pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>494
                     /note="ultra-conserved element locus uce-5048"
BASE COUNT          179 a           78 c           89 g          148 t
ORIGIN      
        1 agtaaatatt ttagttcatt acagcaacag gagatctgct gtactactga atgtaaataa
       61 gctcttccat gcttgtcatc ttacactgat agtatcataa gacaagtaat gacagattaa
      121 gacctgccta gcagagggaa aactaaatta caagactttt attaaggcat aaataaacct
      181 attaactgtt atctggaata ccaattagtg gaaggagcac tgacaatttt atttatcaac
      241 attaaacaca attattaatt acagacctga cgaatctagc agtaagcagg acatgttggg
      301 tgtgctgggg ccttaagtcc attatatgag aaggatgatt accaaaatcc tgtggggaaa
      361 taagtaattg tagctgtaaa attttaattg ccaataaggt aaattatatt ctcttgtctc
      421 agaatataaa tagtatggca ttaaggtacc aagccccact aattttgaac agcaaatgat
      481 ttagacatct gtag
//
LOCUS       KCOD01003482             819 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 387264pyr ultra-conserved element
            locus uce-2008, sequence.
ACCESSION   KCOD01003482
VERSION     KCOD01003482.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 819)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 819)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..819
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="387264pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>819
                     /note="ultra-conserved element locus uce-2008"
BASE COUNT          225 a          153 c          183 g          258 t
ORIGIN      
        1 tttagcatca aggttatggg tgagttctgc tgcagggcct tggggatctt tttgggaaga
       61 ggcatcttaa atcgctagtc atgcacaaaa tattattgca atgaaaaata gtgaagtgaa
      121 taaacagcag ctcacagtac aggatgcttg acacatcagg agtcctagtg ttcactgtat
      181 tttgcaattt aatgcacaat attttttagt tctgtatttc tgtatgctcc actcactgag
      241 ctgtattctt gggatgtgag gttccattaa aaaataaata ataatcgcag cccccgctcc
      301 ccccacgtac actcattttc tgtaatatgg taatgatatc accgtagcag taattacggg
      361 tcatcttcat ttctttcatc tctgctggtt ctgatggctt cattcctttg acggagaaga
      421 tttggctctg ggtgctgtga ttattttgtt aagcattatt cgaatagaca ggagtgagag
      481 aaattaatca atccaaatgc aattagcatc atgtttaacc cagtgatgga cgtctcaagg
      541 tgaaacagcc aggggagttt cagacattat tattcaatcc agtggctctt atctaaatta
      601 taatcaagag gtttttattg gctttgcaga gagaagatgt aactctttcc ctgctttggg
      661 ggtcaaaggg atcagatctt tggccctaca ggatattggc tgcaggcagc tcctagaatt
      721 gggagagagt ttactgtaat atgggggtca ctcagggcaa aatacctgca catcctaata
      781 tctgatataa gtttagcagc tccctagtca ttggcaggg
//
LOCUS       KCOD01003483             780 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 387367pyr ultra-conserved element
            locus uce-6813, sequence.
ACCESSION   KCOD01003483
VERSION     KCOD01003483.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 780)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 780)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..780
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="387367pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>780
                     /note="ultra-conserved element locus uce-6813"
BASE COUNT          179 a          180 c          177 g          244 t
ORIGIN      
        1 gttgctttgg tcctcttttg aaaggagcgt gttacaattc tcccattctc tttataaaat
       61 tggaagtctc aaggtatgtg accagttgga acctgttgca tcttgcagca agtgatttat
      121 gttcacagtt ttgatttgcc tcaatgaaaa gattttcatt catagccccc agctctccag
      181 acggatggaa ttgctgctcc atttaggaaa aggggtgact cgccttgtta ggaaaaagcg
      241 ctgcagcgcc tatatgcctg ctttgtcctc ccttcagggt ggctggcatt cttctctctc
      301 ctctctctcc ctctctctct ttttaacaac gctgaagttg tttattcttt ttggatgaag
      361 tctcagatag gctactgggg atgtgtgctt caattgatgg ggccccctac cccattgtgg
      421 ctgtgtcagg tctaattcat ctcaccgaag cccccttgtt cctgagcgct caatagcgca
      481 agatgaggcg atggaggctg acaatgatgc cacactcttc acttgggggc atccaattac
      541 aggcgagagg ggccccctga ttaatatgct gaaattagtg gcctctgcca caaataattc
      601 cttgttgagt tgcaacaaaa aggcagtcca tgctgcttgt ctggagtggt tatagggaca
      661 gacacaaact ggtcatttaa acttcattat cacttttcca ccttggaaag aatgagggtg
      721 tgactatgaa ttcatgttct tgtttactct gtcaggacgg gctcattaaa gacacatttt
//
LOCUS       KCOD01003484             668 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 387474pyr ultra-conserved element
            locus uce-1424, sequence.
ACCESSION   KCOD01003484
VERSION     KCOD01003484.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 668)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 668)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="387474pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>668
                     /note="ultra-conserved element locus uce-1424"
BASE COUNT          223 a          127 c          105 g          213 t
ORIGIN      
        1 tttttcaata tcgcctaatt gggacaagaa attcagattc ttgaacacct tgaagtatga
       61 ttgtgatatg tctgcaaacc tcaaaaattc ccatgtgaaa agcaaagatt aattgtacag
      121 tatttacacc ttttcattga taactaacac cataaaactg tacaaattgc aatttgtttc
      181 tttttcccac aatccctttg gcttttaagg gatgttcctc aattagttga actgtgtttc
      241 ctcttgcttg ctaagcactt ttggtcaaac aaggaatggc agaggtccac aattagatca
      301 aaagatcaat cctaatgtac cattttctcc tcaccctcct gctttaataa agtggctgca
      361 gttctccagg ggacaactca aaatccgagt actgatattt ctaaattagc tgactctgtg
      421 accttgctag taattgcgtt agtttatcaa tgttcaacac aatttattac tctccaatat
      481 gtaccaaaac gtttatctct caacactaac aatattaaaa acctaaacaa tctgttgaga
      541 aacaaaggac tattcaatat gcataataaa ctggaagaga ctacactgat gggtaagagg
      601 attaatctag gaagtagtca taagtgaaat aaggaaagat gctgtattac atttagggca
      661 ctttttaa
//
LOCUS       KCOD01003485             356 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 387583pyr ultra-conserved element
            locus uce-3473, sequence.
ACCESSION   KCOD01003485
VERSION     KCOD01003485.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 356)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 356)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..356
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="387583pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>356
                     /note="ultra-conserved element locus uce-3473"
BASE COUNT          104 a           68 c           75 g          109 t
ORIGIN      
        1 ctcttgatga ctgaagtaca cactctgtgc ggccctatgc tccagccaca ttggtaatag
       61 taacaaagct ttgatgtccc cctcattcaa cagaatgttg tttagttcaa agcgaagaac
      121 agaggcaatt ctttgctttt aaattattag ctccctaagt cttctgtaat gatatagttt
      181 gactgaagtg tgcagtttat taactacata aagacgatat tattagagcg gagaaaggca
      241 gccgaaagtt ttgcctttca gctcagcagc aggggttttt gatactttga tctcaatcaa
      301 tgctaaatgt ctttgtgaga tagagggagc agcagaaatt acctttggca ccatga
//
LOCUS       KCOD01003486             672 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 387693pyr ultra-conserved element
            locus uce-2265, sequence.
ACCESSION   KCOD01003486
VERSION     KCOD01003486.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 672)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 672)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..672
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="387693pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>672
                     /note="ultra-conserved element locus uce-2265"
BASE COUNT          200 a          126 c          116 g          230 t
ORIGIN      
        1 tactgtttaa aaaaaaggct tgcaaaagca gccctctctt aaatcatcca acaatccgaa
       61 attgccaaga cggacatgga tactgctgtg cttaaaacta tttatttcat tcactgccgt
      121 ttggattact acaaatgatt ttaaggtttc tttctcatac attggaaagt tcccctgcca
      181 tttacttcct agccatttgc gtgcagattc tgcctgtact gggatctctg ccattaaatt
      241 ttcttcacac tgaagggttt tctctgctcc tggcggggcg aagtcatgac ccagaaaaaa
      301 attgattcat gaattctcag ggtgcaacta aagaagagag gaaatatgcc ttggctgagc
      361 tcctactagt gacaatttaa aacctgtaat tagtttggat tcaagctgca aaaggaatct
      421 gaatttaaaa tgcattaatt caaactgata tattaacttt aacaaagtag atcaattatt
      481 atgtagaatc attattacag tctgttttgc taactgttgg attccagact ttattaactt
      541 agattttatt agaaatgcaa gtaattgctt gcgaacactt ttcttggtgt ttttattggg
      601 gttagttagc tttaacacct cagttatgga ttctattttt gtaaattccc atcatccaca
      661 tgctgcacaa tg
//
LOCUS       KCOD01003487             330 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 387794pyr ultra-conserved element
            locus uce-3346, sequence.
ACCESSION   KCOD01003487
VERSION     KCOD01003487.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 330)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 330)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..330
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="387794pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>330
                     /note="ultra-conserved element locus uce-3346"
BASE COUNT          105 a           44 c           51 g          130 t
ORIGIN      
        1 ttttttttaa caaaagaacc tgtttcaatt tattatacat gtctaaccat acaattatca
       61 atgcagcatc ccataactaa tgctgaccca ctttcccaga aaaagatgtt cattgtgcat
      121 ttgaaaggtt gaaaaggttt ttgtggttta aatgttgtta catattttac agcattagga
      181 tctatggaat attttgacaa ctgcaacagt tcaatgaagt tggtaatttc ttcttttaat
      241 tatttttcat tgaacagatt tggagttaaa tttttaagat ttgtgttctg gtatattata
      301 caggaacatt ttgatgaaat gtatcatgca
//
LOCUS       KCOD01003488             479 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 387905pyr ultra-conserved element
            locus uce-1826, sequence.
ACCESSION   KCOD01003488
VERSION     KCOD01003488.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 479)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 479)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..479
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="387905pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>479
                     /note="ultra-conserved element locus uce-1826"
BASE COUNT          189 a           91 c           82 g          117 t
ORIGIN      
        1 cccaaagaaa ctggtcacaa aaatggaaaa gagtctctac actaaacata cagcaataaa
       61 accctttgaa ctaaccaaaa tgtgaatagc ttttataatt aacaaaaata taattctggc
      121 ccctcaaact agggtaacct aatcaaggca aaaaaattaa gaaatggctt actgttaagc
      181 acaacacttg tacagtacta caaaatgcac tgtcactaac aaagacatta gcggcatgca
      241 gaagtgtcac cttcagaaac aaaataatac aataaaagaa ctgctaaaag gcatttacat
      301 gtggggaaag gagagagaaa aagctcatga tccagtactg tctgatagtt ttggagtcta
      361 tttatccaca tttttaatgg gagcaggcac ataaaatggc tctgaaccat cagctgctgt
      421 gtaattgcag ttcatagaaa gagttcttcc tttccagaga acttcaagct caatgaaat
//
LOCUS       KCOD01003489             542 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 388010pyr ultra-conserved element
            locus uce-2847, sequence.
ACCESSION   KCOD01003489
VERSION     KCOD01003489.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 542)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 542)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..542
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="388010pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>542
                     /note="ultra-conserved element locus uce-2847"
BASE COUNT          181 a          102 c           79 g          180 t
ORIGIN      
        1 gtcacaaaat gcagaaaatt acaaaccagt tttaaggcat acatgacagc aaaatataag
       61 tacacaaaaa ctacattaaa tatcagtctt catttgtccc taccagttca acttacctct
      121 cagttccaaa ctcctcactg cagtgcacag cttgagatag tctaagatcc attttagagt
      181 ggactgaaat ataaatgaca gttcgtacta cacatgaaca tagacaactg tataaaatat
      241 ttaaataaag acagaaaaga acagaggaaa ccaacagagc ctttggcaga cccagccttt
      301 gggaatttag cagcttgaga ttcattgcaa atttcatctt taatgttatt tttagttcaa
      361 tattttgtag cactcagaag taaatctttg tgtgctgtct ctcctcctgc ttgtgctgct
      421 tccttttctg atcttttctt ttaaagaaac ctaatatatt ttcaatacaa ttgatttgta
      481 acatgttttg tgatatttgt taaagttatc ctgtttgttc atacaattca gtgaaaacca
      541 tt
//
LOCUS       KCOD01003490             675 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 388120pyr ultra-conserved element
            locus uce-3718, sequence.
ACCESSION   KCOD01003490
VERSION     KCOD01003490.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 675)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 675)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..675
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="388120pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>675
                     /note="ultra-conserved element locus uce-3718"
BASE COUNT          202 a          130 c          146 g          197 t
ORIGIN      
        1 gaggcacaac aggataaagt gattagccca aactcacaca aaagatcagt ggcaaagcca
       61 aaaaacaagc ccagggtttc tggggcagag ctgatggaat catatgctgc acaaatccat
      121 tacagagaga tgtagtagct ttgtggtctg agctgtaagt tcaatgttca tccactccaa
      181 aaatataatg tatggagagt tgagtgtatt ttaagggttg ttcctttatc ctcacagcaa
      241 ctggaaagga tggcagcctg ccctgaaata gtaactatca atatatgatg ccttttgcag
      301 ctttccttcc tgatcaaata aataatttgt aaggttttga tgacaaaagg atgtatcctc
      361 tgctcagcta tcacctgcca gcactactct gtgcaatctg atttagagat ttaagcatag
      421 aaatcgtcct ttctgctgtt tcccctggaa acagggagtg cagcggagag gttaatcatt
      481 tgggtttgca attcagagtc gtcaaaatcc aaaataattc ctcatcttct gagttttaaa
      541 agatgctgct agacttcaaa ctttcaaagg cagtggtgtt gcttgctccc tgatactgtt
      601 taaaaataag taatttatat agccagaagg tagagtgaag ctccctttgc tttgctgtgg
      661 tacagtcatg catgg
//
LOCUS       KCOD01003491             662 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 388231pyr ultra-conserved element
            locus uce-5411, sequence.
ACCESSION   KCOD01003491
VERSION     KCOD01003491.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 662)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 662)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..662
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="388231pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>662
                     /note="ultra-conserved element locus uce-5411"
BASE COUNT          222 a          133 c          100 g          207 t
ORIGIN      
        1 aagcacccac agtgcagatg ctgtagtatc attccaatca ttcacaactt tgcctttaat
       61 ttttggctaa acaaacaggc aaacaaacag tagatgaaac taatggagag cttaattata
      121 tctatccatc aagccctaaa tttgcttcct ttccaaatag caggcactgt ctttaaatcc
      181 aaaaggactg atggcaagat accaagttta aaattctccc actgtcatag actgttttac
      241 taattatcca gattccaagg caatcataca accgtaatca ttcacctcac gcctggaaac
      301 ataagtcttg ttcttttgat gaatatttat aagacagtgt aaagcagtct actttctttt
      361 cccttcaggc aagacaattt ggagttcatc aatatgtatt accaaggact tttataaaag
      421 gcacttcaaa ggaaattcat caggcattct ttttgtcttg atttctgtta gactgatact
      481 tccttttgac aagtatcaat aaattgtcct ctgatggcta gaaacttgat gtcttattca
      541 gaaacttcct cacacagcaa agtctgtcct taagtttcca atgaaatttt tagcagctag
      601 cttctaattt aaggataaag taggacagaa gaagcaaatg aagcacaaaa taatcaatgt
      661 at
//
LOCUS       KCOD01003492             502 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 388340pyr ultra-conserved element
            locus uce-3243, sequence.
ACCESSION   KCOD01003492
VERSION     KCOD01003492.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 502)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 502)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..502
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="388340pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>502
                     /note="ultra-conserved element locus uce-3243"
BASE COUNT          184 a           88 c          116 g          114 t
ORIGIN      
        1 acaaagggag aaaatagaac acatatactt gatagatcat aagacctcac agacgaagtg
       61 agggaataca gaacagcaca attcagatac aggaacgatt aatccaagat taaggaaaac
      121 tgtctaaaca gtttatctcc cagtaataag aaggcgtcac agtttaggaa ccccgtgaat
      181 ggagcaattg tttaaacaca acgaaaaaat gccggcatcc agtagagatg aaatgagcat
      241 ttgagtaaaa tgaaggagca atttaaaagc ttttgagaaa aatcaataga atgccaggga
      301 agagcagggg ttttgagcat tgatgggccc ctaaagctct tcatacattg ttactgagtt
      361 tagcagcagg gaaaagaaaa ttacacagtt tgcaagggta ggcgggaatc aatactgtag
      421 ttagtaaaga gatgctattt cacatctgag tggccagcgg cctgccttca ccagcctgtc
      481 ctgatacctg tttgttaaca ag
//
LOCUS       KCOD01003493             863 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 388448pyr ultra-conserved element
            locus uce-3287, sequence.
ACCESSION   KCOD01003493
VERSION     KCOD01003493.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 863)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 863)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..863
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="388448pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>863
                     /note="ultra-conserved element locus uce-3287"
BASE COUNT          246 a          196 c          184 g          237 t
ORIGIN      
        1 gattatgatg acagtagccc caccagtagt ccagccttca ctaggactga tggcctttat
       61 gcacggagta gctgcttgta caagacagaa aatcaagacc ttaatacccc tccttgcccg
      121 acacgagctc tcttccccaa tgacaaacca tgcaaagcac aataggagga aagtgcacga
      181 tttctcgagg aggcacacaa agggcaaccg tatatcagca tgttgatgta tttaaagcaa
      241 actattaaat gttttataaa gcaaaggcca agcagcagaa cactggtgag caaggaaaaa
      301 ctggcttgat atagcaaatt gtatgtcagg gcaaatatgg ctattacaaa tgattaagca
      361 tcgcatgcat gtggcatgtc gatttatctg ctttgctgta cagatctaag cagagtcaat
      421 caaaaggttg ttgagggaga tggaagagca aatgctctga atttcgattc ctcataagca
      481 gctaattggg ttgggctttt tcatccgcga actttgcctt ttggttcaaa acttcatttt
      541 cctctgtcac tccgtaatta ctacttttca cttttcatca ggaaaaaatc aaaagcacta
      601 tattaatact tttgtcaaag gtacacattt tacatctaat attgtttgtc gacatgaatc
      661 cctgagccat ttacttgacc tccctttgtc tctagagtct tcacatttgc atgagttatt
      721 acaatggtgc tgtggagcag aggtaggcag cagccagcac cgggctctcc atcctcccaa
      781 cagccagtta gctgcggcga ggctggggct gaaggctgca cagcctctga gagaagcgct
      841 ttgttcttcc ctttgatcag ccc
//
LOCUS       KCOD01003494             706 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 388562pyr ultra-conserved element
            locus uce-7505, sequence.
ACCESSION   KCOD01003494
VERSION     KCOD01003494.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 706)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 706)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..706
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="388562pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>706
                     /note="ultra-conserved element locus uce-7505"
BASE COUNT          179 a          136 c          140 g          251 t
ORIGIN      
        1 aatcagtttt ggaagtttta gttggaggag gtttgagatt tttatagaat actattgaca
       61 gtttctcaag tcctcagcta ttttgcttcc acttggttat aaatatcctg ccaatttgaa
      121 tattcagcct ttggtttcta aagggcacat aatagcagtg gaatttcctg tgaactgctt
      181 aaagttgtag agaaaccttg gtcccaacta ctcggtacat ttgctagaaa agcttgtgac
      241 tgagtgctct gtatgcttgc ctttttgctt ccacctagaa tccagggcca ttactttctg
      301 taaccatttc agtgagctgc catagttttc agtctgtact gtcacctgat ccaagcatgc
      361 gccaaaatac ccactgtttc tggctcctgt ctgctgaatc tgctttgcaa acccttggtt
      421 cttaagcttt tgcgttagcc atggagtgtg ctggacacat gccatcttgc ttccgtaact
      481 cctctaattg tttatgttta ctaaacttgt aaatgctatg acagcatcgc catgtgaaat
      541 tgtgtggctc atgtgtcaaa aaaggctgct tgtgaaaata tttgtcagaa gaatatgaat
      601 gctacacatt gcactgcatt cagtgttttg tatcaacaat gtcatggtgt tttaattgta
      661 gacaattatt ttgtgtttta atatgcaaag gtaagttctt gtaaac
//
LOCUS       KCOD01003495             643 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 388672pyr ultra-conserved element
            locus uce-7550, sequence.
ACCESSION   KCOD01003495
VERSION     KCOD01003495.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 643)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 643)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="388672pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>643
                     /note="ultra-conserved element locus uce-7550"
BASE COUNT          150 a          131 c          172 g          190 t
ORIGIN      
        1 gtgtttattg atatccacat tcctccattt tagtgcttta gcaatcgtgg tgataaacaa
       61 caccataaca atatcccgtg ggcaccccct gtactgcaag gtgctgctta aggagtatct
      121 ccagatggga gttggttctc agcacagggt accctggagg tcatggtcca aggaggcagg
      181 tgggcagcag gcatgaagtt ctgcctctca tctttcactc tacccacaga gtgctggaaa
      241 gcacaaattc tgttgagatt aagttataat ttaaggcagt gaacatgtgc tctgctggca
      301 gctataaaga ttcaaatcat aaagttttac agtggaatgg tttctgtaaa agcatcgtta
      361 gaaaggcgga atcgtgcctt taattcttac gacttatggg gctgcctggt ttgttttggt
      421 tttagtggtg cttagtgtga catgaggtgg ggtcccagcc ccatctttcc atttaaagtc
      481 aggcctttct tccccagggc cctgctgttc cgagaaggac tggagatggt gcagagtttt
      541 ctgtgttcac cccatccatg tgagttttgg gacccctgag tgcagagttt ttgaactagc
      601 aggaaggaag atggcagatg tgtgctgcat agttgtggtg tgg
//
LOCUS       KCOD01003496             561 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 388779pyr ultra-conserved element
            locus uce-2506, sequence.
ACCESSION   KCOD01003496
VERSION     KCOD01003496.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 561)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 561)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="388779pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>561
                     /note="ultra-conserved element locus uce-2506"
BASE COUNT          146 a          110 c          151 g          154 t
ORIGIN      
        1 gacatcttgc tgttgctcct gagctatctc ctctgaggga gtggcagtgc tgcggtgtca
       61 ctagacaata ttaatgcatg taaacatttt tcaaaaggca ttacttcttc ctgcacgtac
      121 tttattatat tcccacaaat ctgactagat ttgatagatg ggtaaccagg gagcaaggat
      181 gggggaagcg tgctagagag ggaaggaggg aaaggggagt gaaataaaca caaacctgct
      241 gtaattcaaa acaaggtaaa atcagattgt gtgctttggc taattttctt attcaggtat
      301 cgatccagtg gctgctccag agtctattag cagtcagcca gtgaaaatat ttcccatcgg
      361 gggctctgac ctgagacggg ggtgaatcta tagcaatttg ttcaaacaga ggaaagcttt
      421 ttcctctgat ttgtattcca atttgcacag cctacagagg ggggtttgca gggtggtgct
      481 tctcaagtgg gtatcaggct tgagccagga aagcctgatt aaactctgag ctgggccatg
      541 tgcctccctg ggccgtctgg g
//
LOCUS       KCOD01003497             733 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 388888pyr ultra-conserved element
            locus uce-5291, sequence.
ACCESSION   KCOD01003497
VERSION     KCOD01003497.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 733)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 733)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..733
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="388888pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>733
                     /note="ultra-conserved element locus uce-5291"
BASE COUNT          223 a          124 c          142 g          244 t
ORIGIN      
        1 ttttttgtgt gagaaatggt ttaagactga tttcttttta ttgcagctgt ttaaggatga
       61 tctaaaagta attacagtga ttgaggcata atgcaattca aaataattac agcccactgc
      121 atataaaact aacaaaactt tctgccttga tttatgggtc ctcttggcaa ggcataaacc
      181 tcaaatgatg cctctgggag caacactcta gataatgtta ggccatttaa aaaaagcaga
      241 tttgtgtagt ctatcaggcc tgagtaactc atagtgagaa attggttgtt atcatagatc
      301 acagatactg ctcaaagctc ttatgaaaga tgaattaatt tcactaatgc tttaatgcaa
      361 acctttcatg gaggaggctg tatggtgata accttactgc ggtctctcct ttctcaatta
      421 tgatttatgt tgtcttttag tagatgaaac tgcctgtatt cacaatccat ctgctggcta
      481 aaggaatcct attaacagag gatctgagaa gagacttaat aatgtaaggt gaaagatgtg
      541 gtatcccctt tctgggacat gaagtaggat cctattttaa aatgtagatt actctctgag
      601 agcatatatg tcatctccac ctggttttat gctggcttac agatggtgta gcagctagtg
      661 actatttgtt aaagttaaag attgttgcgt tgaaatctgc aataaaaagc aaatttctct
      721 ttcctccttc cca
//
LOCUS       KCOD01003498             237 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 388986pyr ultra-conserved element
            locus uce-7146, sequence.
ACCESSION   KCOD01003498
VERSION     KCOD01003498.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 237)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 237)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..237
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="388986pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>237
                     /note="ultra-conserved element locus uce-7146"
BASE COUNT           64 a           60 c           40 g           73 t
ORIGIN      
        1 cacacaaaca caccctttaa atatttccac tcccagattc tggcaactca ccttgtgtgt
       61 tctggaaata gtggcgccag agtggtctga tcttgtcctg accgcccacg tcccacactg
      121 tgaagctgat gttcttgtat tctactgttt ccacattgaa acctagagat tgtagcacac
      181 atctcactta aacataactg ggtatttagc aagttgtcat cattgttaac ttaaaat
//
LOCUS       KCOD01003499             849 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 389093pyr ultra-conserved element
            locus uce-1591, sequence.
ACCESSION   KCOD01003499
VERSION     KCOD01003499.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 849)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 849)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..849
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="389093pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>849
                     /note="ultra-conserved element locus uce-1591"
BASE COUNT          275 a          171 c          136 g          267 t
ORIGIN      
        1 ttttcatgta cattcaactt tattttctat tgcacgagct cagtatcctt caaactattt
       61 atagtgttaa ggactgaatt caaggttgag accaaattag aatgtttgtt cttctctgca
      121 atgccaaaat gatgaagcct gctaatagtt catcttgcta aaaaatactt tatatgatgt
      181 atggttttct gatatctgct gactgtagat atatttatat aagtttacac agcaagtaca
      241 gaagtttcat ataaaactac tgatccaagc gaaaccctat caaatggtgt tctctttcat
      301 tctctttctg atcctaatgc agcttttaga taatgcaaat agatcacagg ccaaaatgat
      361 ctgacaagat aatggagctt tcattgctgc ctgattaact tggctgtagg gttccacctc
      421 gaccctttcg gcatgatggt cctaattaat aatgattact cccaaaatgt gcaaatggaa
      481 cgataaacga agaaccaact aattaactgc aaccatttct actaatcatt agttaacatc
      541 ccattttgtc atcattacac tgaagcgcat gcaaggacag ataaaacagg gtcagccttt
      601 ttgcccccat aaacctgaca gccatatttt ctttcccaat aaaagacaaa caagtaatta
      661 aactgagagc tgaagtaagg gccacaaaat tcgattactt caatattcca ccggtgggtg
      721 aaacagaacc atttttcaaa ataagtgctg aaatcatccc attcctcagg catacttcaa
      781 aggtgaaatt gttttctttt ctatcagaat acggattcac tacgtgaagg attacttcag
      841 ctttcagga
//
LOCUS       KCOD01003500             531 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 389202pyr ultra-conserved element
            locus uce-7757, sequence.
ACCESSION   KCOD01003500
VERSION     KCOD01003500.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 531)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 531)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..531
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="389202pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>531
                     /note="ultra-conserved element locus uce-7757"
BASE COUNT          161 a          105 c          111 g          154 t
ORIGIN      
        1 ttcagaaaaa gaattgggat gtttgtccat gcagaaaaga ctcaatgtaa ggcaattctg
       61 tcactcacct catcttcata atctttcctt agctccctct gccttctaac cctgctattg
      121 atcgtgtcat aggctacagc agtccaaggc agggggctga aaacctttcc gaacagcagt
      181 tgccagtctg cctgttgcag cctgaagaag aaaagcatgc tgtgaaaaca atcagtgcat
      241 ttgctttaga tctaagtgat tccaactagg tcgatgcttc atgctgatgt gttgaaaaca
      301 tttaaaaaat ttctcggagt ttgatttcaa ctgaaacatt tcatcatacg tctgactctc
      361 tgaagttgtt atttcccact actgtagcag acaacaaaag cagtagggaa actgggcctt
      421 tatttgaatg aaggttggtt gataagctaa cgctcttgca aattgagagg agtacttatt
      481 tcaggaacgg aaaaagtaat cacagtttta cagagtgcaa atgagagtat a
//
LOCUS       KCOD01003501             588 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 389311pyr ultra-conserved element
            locus uce-2009, sequence.
ACCESSION   KCOD01003501
VERSION     KCOD01003501.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 588)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 588)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..588
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="389311pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>588
                     /note="ultra-conserved element locus uce-2009"
BASE COUNT          150 a          127 c          103 g          208 t
ORIGIN      
        1 tgaagtggag aaagtttaat tgtgctgctg atttccttgt gttccctcca ctctccagca
       61 gaaaccttgc ctagattgct gtcattccta agtttggaaa caataacctc tcgctcaccc
      121 agccagttca aagagaaggc cacgttctat caaacactcc ttgtatttaa tagaagtctt
      181 tgaaaattgt caagcaattt tggcttctcc ttttactctt cagttacttt tgatttaatt
      241 gtattttcca gcagttttga attggaaact taataagagt tctagttaat tttctgtctt
      301 gtaattaccg atctcatttt tctgataatt ggccacagca attatatgta tatttactaa
      361 tcacatagga ggctctgcag tcgtgtctat ctgccaccat tgataatggc acacacattg
      421 cagaggtgct tttatcatct tcttttttcc actacatcaa agctatttcg ttctccataa
      481 tgaatacatg catgcatttg acacagttgt gtgctagaga aattgtttgg ctcccaccaa
      541 atgctgcacg ctccgagttt cttgcctgca gcgctggaag gttgtatg
//
LOCUS       KCOD01003502             519 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 389422pyr ultra-conserved element
            locus uce-6562, sequence.
ACCESSION   KCOD01003502
VERSION     KCOD01003502.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 519)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 519)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="389422pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>519
                     /note="ultra-conserved element locus uce-6562"
BASE COUNT          171 a          116 c           82 g          150 t
ORIGIN      
        1 caaaggttct tatcagttca aagttatcac ttccccactt ccccaaacta taacggatat
       61 gccatggaca cagaaactcc taacagttta gccccccttt gcagaatgca tagtttacaa
      121 ttcacttaca aaataaagaa gcaatgctga ccacattttt ttttttgaaa aaagaacaaa
      181 caacctcttc ttaagttcag tatcaaaatt cacatttgca taataataca tttcaaggcc
      241 attagagagg aatgagagcg aagcaaagaa aactgcagag tctctcctct ctttgtcttc
      301 ctgaatagag ctgagggatc ccactggagt ttcttttcag ggtgggaatt acaaagcgct
      361 acaacaacag ctcttgatct tgtacacctc atgttttagg tgggacaatt attaggcaaa
      421 tggaaggaga cactgcagat tcccatgttt agctacaaac agcttcaaag aaacttactt
      481 cagattttcc ttttaaacac ttctatctca ccatttcaa
//
LOCUS       KCOD01003503             944 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 389532pyr ultra-conserved element
            locus uce-834, sequence.
ACCESSION   KCOD01003503
VERSION     KCOD01003503.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 944)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 944)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..944
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="389532pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>944
                     /note="ultra-conserved element locus uce-834"
BASE COUNT          322 a          160 c          150 g          312 t
ORIGIN      
        1 agaactctcc ccaaaagtct ttaattatat gtctgtgtat caatatgtaa tactttgttt
       61 ccccagactt cttttagctg acacaggcag actttgaaag gagtaaaatc agcaatgtaa
      121 caatgaaatg catacaaact tgctaaatgt gatggcaaaa taaaaagctt cagtcagtat
      181 gatcagttaa aaaaagatag ccagcaaact gtctatcatg tgatgaaatt tgacagtagg
      241 gattatggct ttgatggacc agaacagcta atagaagaag ctgacatttt tgaaaccctg
      301 ctaattaagg gttccttcct taatattaaa ataaagtctt tgtctgggtt ttatggttgg
      361 agaatcaggt gttttcatta atatatgcca gtcagtctta ataagcttgg agggcagagg
      421 aagttattat tgagtgacct tctacaaaat aagcatgttg ctaagggctc taaccctgcc
      481 ctgttcagac tgatgaatct catttccaat gcaaaagctt cacaagaaat ccaagtattc
      541 tctgtgcaat cacagaaaat aatccttgtg tctcttgtaa tgtccagaat tgccacttac
      601 tatactacta ctgtacaatg aatattacaa tacatattat ttttctagca caattgtcta
      661 catttctgaa ttgccaagaa tagaaaaact tattgtccag acacttgtat tgaaaagtca
      721 gctcatttta atacttctca aatagtcatc taccctgttc atgaattata atgcacagaa
      781 tacatctgac aatactagct ttgaaaaaga gatatgtctg tattattaca tattcatttt
      841 caaatagatt ttgaacagat tttaaaccat tcattgaaat tcattgaaat gataaattca
      901 cagttggatt ttgattgact cttaatctaa tttcacattt gata
//
LOCUS       KCOD01003504             458 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 389643pyr ultra-conserved element
            locus uce-4969, sequence.
ACCESSION   KCOD01003504
VERSION     KCOD01003504.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 458)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 458)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..458
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="389643pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>458
                     /note="ultra-conserved element locus uce-4969"
BASE COUNT          124 a          106 c           72 g          156 t
ORIGIN      
        1 agacctctac ggtccctaag ctatttaaat tgtgatttca ggcgttcttc cccccccttt
       61 cttgcagcag tcattccgtc aatgcaaagt gcctaaactg gacacctaga atgctttacc
      121 caactcattc ctgttgtcct tttaccattt cttgtgcaac gtcatcagga gtttccttct
      181 ccagatcaaa agtaaactca atggctccat tatctttggg ttttcctttc agtttcttag
      241 gatcttctac ccagagtctt aaggcaatag aggatttcct accatggtct tcttctgcaa
      301 gttccactct taccccagta tcttcagcaa aaaaggcatg gcttagtaaa tctttaattt
      361 catatctgca gattcaaata ctgtaacaat ttcagaaagg gaaacattta tatgtttggt
      421 gttcatccat aatgaatttt tttgaaaatg aaaaggaa
//
LOCUS       KCOD01003505             766 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 389752pyr ultra-conserved element
            locus uce-5345, sequence.
ACCESSION   KCOD01003505
VERSION     KCOD01003505.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 766)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 766)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..766
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="389752pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>766
                     /note="ultra-conserved element locus uce-5345"
BASE COUNT          223 a          141 c          155 g          247 t
ORIGIN      
        1 aatttgctca tattaatgct ggaagagagg gttaagtgct gtgtgacaga aactgtatta
       61 gctgttgcaa atcattttga tcaacagcaa aacgtttgcc tttgaatctc cagtcccagt
      121 tggagcagca acctttcccc tataattaat ttttgtgtgc tgtagtccat tagagaagag
      181 agtgacagcc tctggacaca gattactgtc ttaggtatgg cccaaaggaa cattatggtc
      241 ttaattaaag gtggctcaat atgtcagcca ttgcaatagt ttgagcattt ttaatactgt
      301 gtcagtatct aaccacctta aaagaattct ggtagcaagc aaactaagta atttaaaggc
      361 agctcatgtt ctctgtaagt tttgcaggac tgctattggg aatacttgat aatttatgaa
      421 ggcttacacc accaaattaa ttacattttc ctgatgccac atgtcttttt catacaagct
      481 agctctgaat tataagcaac aatattgtcc ttgttcattc cttcagtaca ggagacagct
      541 tactaataac accggtagaa ttcagttgct gtgtgtcatt tattaaacac tgctacagtt
      601 aaggtggtat atgctcctct aatattaacc ctgatttctg ctgtactgca tctcagttct
      661 gagcctttgg catgggtttg atttgggagc attttttaca gaaaaaataa gttctgagga
      721 aatgaccaat gcggagactt gctgtgatat gcaggaggta caacgc
//
LOCUS       KCOD01003506             486 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 389862pyr ultra-conserved element
            locus uce-7716, sequence.
ACCESSION   KCOD01003506
VERSION     KCOD01003506.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 486)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 486)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..486
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="389862pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>486
                     /note="ultra-conserved element locus uce-7716"
BASE COUNT          133 a          110 c           94 g          149 t
ORIGIN      
        1 ttttttgaga attgttaata aaatcacact tctgccagga tggaatgtaa atgctgcact
       61 aatttaatta cactttggcg ctgggagaca ctaatgtaaa tattctggtg agtaggccta
      121 agacacttga agtaattact taaaggcttc ctttcaaaga atctccccct ttttattaaa
      181 tgccttttaa cattagcact ttcttcctga caaattaaat gaaatttcat tactctccct
      241 gacttaatgg catgaggctg cctgctgcga gttaaccctc tctggatgga agaccagagt
      301 ttgcatgctc tgtttggctc tgggtgccac cagcgtcccc ctggatcacc atcatcatcc
      361 tcaaacgtgc cacaagttct gcctcatgtc ccagagtacc ccaaatattt ttctccaggt
      421 ttaggggagc acaagttgaa gctgggagct agtcctagga tcattaagag atatggccat
      481 aaaatt
//
LOCUS       KCOD01003507             898 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 389971pyr ultra-conserved element
            locus uce-1127, sequence.
ACCESSION   KCOD01003507
VERSION     KCOD01003507.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 898)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 898)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..898
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="389971pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>898
                     /note="ultra-conserved element locus uce-1127"
BASE COUNT          251 a          198 c          176 g          273 t
ORIGIN      
        1 aaaacatggc aaggttttat gctttcatct ctgtacattt tccatttggg tatcccagat
       61 ttactgtgtt ctgagagtta aactgtacaa tagttagaag ttaattttct ttcctgaaaa
      121 aacaaacaac agaagaagga atgtaacctc atatcctcat cccgaaatta gctctattgt
      181 caaaagatga cagctgtatc ctgatttcaa gaatttcatg ttggaattaa gcagcatttt
      241 tgaaaccatt gtgttacttc aaacagatcc ataatggtcc ctcagcaaac cattttcaga
      301 agacttgtgt aagtaagata aaaagacacc atttctgaag agatgctttt atgggctagg
      361 tcagagtgct ctttccatgt tgttcattcc cagtcgaatt tcctaatagc ctatctcctc
      421 agctaacaga tgcccagcct catgtcggaa ccagatcgag ccaccactga gatgatatcc
      481 agctcctttc ttattgagcc gtttccctag cagatggtgc aatgctgcag gcacactcct
      541 tcctgttaat taccagcctt cgctacagat ggaaatgtca gtcagcctca caggtcctgg
      601 ttcctgccat tgcctcagtc catagccctc tacctaggca agatgctgcc aacacacacc
      661 atgtgttttg tgactgctga ctaggcaggc aacaaaaaac aacttagttc atgaatattc
      721 atggaggaat gtttagagtt ctgttcatct gcaatgctta tagatctgct taaaggagat
      781 tgcactttcc gaggagccct gtgccccttg ttttactatg gtgtgggcag atgagttatc
      841 aaagtgtgtt gctatagtaa catataaagg gctattaaat gcctgtcgtt tggagact
//
LOCUS       KCOD01003508             547 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 390083pyr ultra-conserved element
            locus uce-516, sequence.
ACCESSION   KCOD01003508
VERSION     KCOD01003508.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 547)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 547)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..547
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="390083pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>547
                     /note="ultra-conserved element locus uce-516"
BASE COUNT          171 a          112 c           92 g          172 t
ORIGIN      
        1 agtgatgctt tgcaccaggc tattgtccac aaaccattat ttgtcgaaaa acaaacaaaa
       61 ggagaacatt ggagatactt ttatatgata cttttctgat tcctgaaaat gtgagataat
      121 gaataaaaat gttcattaca gaattattca cttttcttcg tgattcacgt cccagtaatt
      181 accgtgacca gcctaataaa aactgctaca aaacgaaggt caactagcag ttagaagtgt
      241 tcattttcat ttcaatgtat tcatctctgg ctcctaatgg cctcattttc tcctatgctc
      301 tttaataaat accactgaat tacaggttaa atagctaaat taaattattg caattacagc
      361 gtgcggagca ctgaaactgg tttacctttc ccagttcaat tagaggggaa gtttcaacag
      421 cctgagactc ctgattgctg tcaatattct gaatcactag gaatcctcac taaaggccag
      481 gttatttggt tacagactgg gtaatttcca cacccctctt ccctcctgta taaagaggaa
      541 tgacttg
//
LOCUS       KCOD01003509             468 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 390190pyr ultra-conserved element
            locus uce-3660, sequence.
ACCESSION   KCOD01003509
VERSION     KCOD01003509.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 468)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 468)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..468
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="390190pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>468
                     /note="ultra-conserved element locus uce-3660"
BASE COUNT          152 a           98 c           74 g          144 t
ORIGIN      
        1 aaaacctgag gaaccagcct ttaaattatc catttgtaat gtttcttcat ttcagctgaa
       61 acaatgatcc cagtgcattt tcttttaaac tgtgtctccc agtccaagtg gccacctact
      121 ttgttgtcca aatttctcgt gcagttggaa tcttacaatg tgtaatctca gtagggttat
      181 cagttatgtc atgcattata cagcctccaa tcagcgtagt gggaaacaac attttcattt
      241 aataccagga gaaacagtgg aagtcagcga ttgataccaa cacaatgatg ggaaaaagtg
      301 tccagaggtg ctactcacat aatctcactt tacaacatct tgaaaattca atagaaagga
      361 ctttgctaac aataccagaa tgacatacca ctgattattg ttcctaaagc tcttaacaat
      421 aagaaagctc tctaaatata tctcaaccat ataacagttt gtttcttc
//
LOCUS       KCOD01003510             324 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 390298pyr ultra-conserved element
            locus uce-6665, sequence.
ACCESSION   KCOD01003510
VERSION     KCOD01003510.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 324)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 324)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..324
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="390298pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>324
                     /note="ultra-conserved element locus uce-6665"
BASE COUNT           99 a           58 c           50 g          117 t
ORIGIN      
        1 taagttttag ctgacattca attttaatga ctttttaaac aaagtaacta ttagctgtgc
       61 atcgttttat agtttcctga tgtctgacag gtgtttttgc ccatgtggga aacatgctaa
      121 taacattttc cctaatagct cataaataat aagcatttag cattttcctt tgtatactgc
      181 tctgtcaata gccaatttac ttttcagaag ccacaacgtt ttcctgtcaa tcagttttag
      241 cctcgggcac tttttggtga ttagaaaccc cttagagagc gagaactcca aattagtttt
      301 aaataaaaaa taagaatatt catg
//
LOCUS       KCOD01003511             497 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 390407pyr ultra-conserved element
            locus uce-6013, sequence.
ACCESSION   KCOD01003511
VERSION     KCOD01003511.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 497)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 497)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..497
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="390407pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>497
                     /note="ultra-conserved element locus uce-6013"
BASE COUNT          145 a          103 c           93 g          156 t
ORIGIN      
        1 aattgtgact gtatttaaca cagacccact tttactttaa cagtaattct atgaacagta
       61 ttggacaaaa actacatcag tctgcatata cactgaaaac gatcaaagag aaaaccccag
      121 cccagaggtg ttacaggctt acaatggagc tttctgtcag tttaatttgt agacaacaaa
      181 acaggtcaca taaagttcaa gaaatgtgtc aggtcagaag ctgtccccca aagcagaata
      241 aaactggtga tgttataggt attacttacg gtagatcagg cagcactttg acttggttct
      301 gcttatcgcc atttagcatc tgtaatgtcc tttgagactc agggcatggc tgttgcccta
      361 ttttcttttt ctttgctttg tgtatctttg tctcacgcat ccctatctct cgcaaagcag
      421 gtgaatagga acagacctgt tgccattttc ttttgttgta cttgcaatga cccacactaa
      481 gttttaaaaa gtctgat
//
LOCUS       KCOD01003512             622 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 390515pyr ultra-conserved element
            locus uce-5322, sequence.
ACCESSION   KCOD01003512
VERSION     KCOD01003512.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 622)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 622)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="390515pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>622
                     /note="ultra-conserved element locus uce-5322"
BASE COUNT          201 a           74 c          112 g          235 t
ORIGIN      
        1 ggggagggag taattttctc tataatcctt gttattatat caaaagtgat agttgaggac
       61 taggagctga aacaatattt tatgaaagta tcatgttgaa gtttttgcag gtttcaaaat
      121 atttaaatat gtaaatttca atgaagagac ttcagatttt ttgatagcct aatgatttta
      181 agcatctcat ttctagtcaa acactgacaa aagatgttca gattgcagtg tgagatggtt
      241 tctatggtta cagttgtttc ctagcatttt agtgacatct tttgtgagca ttggctgctt
      301 cacttatttg tcactaatgt atgtgtagaa ctatagttaa tagccttggg cggacaattt
      361 ttttttctct gaatggtggt attgtttttt agcagcattt ttcaataagg tgacaatgca
      421 ctagaatact aatggtatgt atggtatttt aagatgtcaa gttttcaata aaatggtaat
      481 gaaaattttg catttcattt aatagctaaa tattcatgaa tttttcacag catgatcaag
      541 tgagcaaaaa aataaaggaa ctgtataatg tgtaatacta aacatcataa atttaacttc
      601 tttttataga atctactcta ga
//
LOCUS       KCOD01003513             268 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 390722pyr ultra-conserved element
            locus uce-5683, sequence.
ACCESSION   KCOD01003513
VERSION     KCOD01003513.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 268)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 268)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..268
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="390722pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>268
                     /note="ultra-conserved element locus uce-5683"
BASE COUNT           87 a           48 c           39 g           94 t
ORIGIN      
        1 acatttttca gacacacact cagtaataaa accaccatta tataccataa cggatttaag
       61 atacttttaa gggaaatatg agtttgaatg actaatagtt accttatcat gaagtaggct
      121 tataattttg ctatctgagt ctgcagcgtc ttcagttcag tctcttcgcg cattagcacg
      181 ctgagtatga tttattatag aaatgttatc atgtgagcta aacaatatat tattcaattt
      241 cacaaaaact cgcctagatt tttctttc
//
LOCUS       KCOD01003514             574 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 390828pyr ultra-conserved element
            locus uce-1203, sequence.
ACCESSION   KCOD01003514
VERSION     KCOD01003514.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 574)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 574)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..574
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="390828pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>574
                     /note="ultra-conserved element locus uce-1203"
BASE COUNT          195 a          102 c          130 g          147 t
ORIGIN      
        1 attttgatga ccgcagaaga ccctgggaaa gacagaggga tagggatgac agagatttta
       61 atttttgcag agaaattaat gggaacaggt ttggaagaga cagaatgtca aacaactgga
      121 tcccgcctcc acatccacgg gtttttgaat attttgatgg ggccacttct caacgcaaag
      181 ctgataatat gccccaggta aatggtgaaa atacagagac agaaagtcag ccaccaactg
      241 cacaggtgca ggatgatcca gaactttatg aaaaactgtc atcttccgtc gagataaaca
      301 aagagaagag tgacacagaa gctgatatag agagtgaacc agtggtagaa agcacagaaa
      361 ctgaggggac ataatcatca ctcagtaggt aaaagatacc ttttgtaaag ttgtcatctc
      421 tctgtaatag ataaatggct gactggaccg tagcagttct cttttgtctg ccagaattaa
      481 gttaatctga tgttcatgtt catctttcac ttaaataact gtacaactga cttgtataga
      541 acactgttct taatttgaac atggtaggta aacg
//
LOCUS       KCOD01003515             641 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 390939pyr ultra-conserved element
            locus uce-2511, sequence.
ACCESSION   KCOD01003515
VERSION     KCOD01003515.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 641)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 641)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..641
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="390939pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>641
                     /note="ultra-conserved element locus uce-2511"
BASE COUNT          177 a          109 c          150 g          205 t
ORIGIN      
        1 aggtcaaatt gctttaattc tctataaggc cttgtttttc ttgtatttca gccagcattt
       61 tccagtgcac agtatttttt gctcagtgta aacagttcct tgctgtggtt acacagacaa
      121 atatagcagt tttctcggag aagagtctcc ctgtgcattt cttaaccatt tttgggaaga
      181 attgatctat ttgtgcatct aggcagtagc tgtaaattga agtgacatca tatatattac
      241 tcccattgat ccacttttag actagagcca ggataaaagg aaatggcatc agggaggaag
      301 tatgctcatt taggcacaga tcccagtgtg ataatggagt aataatagaa atcacgccac
      361 tgtcaatcgg ttgctgcatt agtctgaggc agatttcccc tccaaggagg ctttcaatga
      421 cttcattcaa gtgcaggcag gagcaaatgg gatattcaac ataccagctg tacaacgtga
      481 tttgtgtcct ggtggagggg tgcagtgcaa ggtgctgtgg atactcaagt agatatagct
      541 atgaaaggtc agtagtcaaa tgttttagta taaagggtga atctggcatt tattgcattt
      601 gttaatgtag gaattgataa atttcgtgtg ggtggtcttc t
//
LOCUS       KCOD01003516             649 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 391045pyr ultra-conserved element
            locus uce-7504, sequence.
ACCESSION   KCOD01003516
VERSION     KCOD01003516.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 649)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 649)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..649
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="391045pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>649
                     /note="ultra-conserved element locus uce-7504"
BASE COUNT          220 a          108 c          122 g          199 t
ORIGIN      
        1 aacaaaacca ggtacaactc tgctaaagtt aaatggattg tccctgctta catcaatgct
       61 aaaattggtt tttaagttgc aaaaagagaa aatggaagcg ctaacaattt atcttaaaac
      121 atctactttt gttcttaatt gtaatggtgt tctgtaaaga aacacgacct tacagggcat
      181 tttcaggaat agaacagtct atatattaaa aggcagcaaa tgattcataa ctgcttagcg
      241 gtcaggcctg tggggccatg cttcccatgt gaaatttttt tctgcattgc aaactcttac
      301 attaaattgt gataaatgaa gagcggaggc tattcataca aatcaatgac tttagtgtat
      361 gtgtcattag cctgagagat gcaggcagcg gtcactacta taaatcatgt gatgatctgc
      421 tgtctgcgac tcgatgcaag caagcagatg cattaggaag gttaaagaat gaaattaatc
      481 tgtgcatttc ctttccttta gtcacctggt cattaaaatc acatgatcca aagttaaact
      541 agctacagaa cagtaagttg gctaagttag atgtcacctt tcgttaatta aatattaatg
      601 ggattaattt attcatcatc acacgaaagt aaaatatata gaataggta
//
LOCUS       KCOD01003517             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 391156pyr ultra-conserved element
            locus uce-3856, sequence.
ACCESSION   KCOD01003517
VERSION     KCOD01003517.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="391156pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-3856"
BASE COUNT          192 a          133 c          125 g          184 t
ORIGIN      
        1 aatgatttcc caaattttgc atgaaaaatc acattgctcc ctgtcttcat gttatttaat
       61 gactattatc ataatgagag caatgggagc aattcatact gtagacgaga ctgtattgat
      121 taacagctaa aatggtaggt gtaaatattg ccaaatacac tatgtccagc taccatcaca
      181 ctcgttctgt gtcaatccag ctgtgagatg atggatagaa agtaaaaata aaatcaccaa
      241 cctcagaatg ctttcgccaa atgtctatgt tctttcgctg ggctttcgag aaatggtccc
      301 aagctttttg tctggtagaa gcgttgaaaa cggcgacaat ctgctcaact ttggtgaaca
      361 aggaagtcaa acaagacaag caatttatgt tgtgatcact atagagaagc aaagcaaaga
      421 cactaggagt ctatggatga tgtcattact gaaacaacat catcaatatc catccaatga
      481 cgtgtctttt gtacttacat tgtaccaatg ttggagatgt ctcccttcaa gtctgtctcc
      541 ataactttca ccaagaacca gctgcttccc cgtgatgtct gctgccactc cctgtgctgg
      601 cacatgcatg tgtggcgtgt gtgactacag aagt
//
LOCUS       KCOD01003518             709 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 391266pyr ultra-conserved element
            locus uce-3783, sequence.
ACCESSION   KCOD01003518
VERSION     KCOD01003518.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 709)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 709)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="391266pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>709
                     /note="ultra-conserved element locus uce-3783"
BASE COUNT          223 a          119 c          123 g          244 t
ORIGIN      
        1 tttcattttt atgttctgga gtcactgaaa atgaagaaaa tattgtggct ttcattggat
       61 gactttcttg ggttttaaca cattaatatt tatgctgctc gattgtctat gttataaata
      121 gcctctcaga aatctctgtg ggtccctttt tagtttagat atttaaaaca taagtagctt
      181 gaaagcagct aaatatcagt gctacatgca acttcatcaa aagacagaaa gaaggtgctc
      241 aagcactgga tcttctcttc ctcctaggaa agagttaaca caaagaaata aaatcagata
      301 tgtgtagcct ccagacgtcc attaaagtgc agaatgctgt tttctatcac agattatatg
      361 ccagatgttc aaactatctc taatcattgc agatgtaatg gagtagaatg ttgcagtttg
      421 tgagtttact ggcattaatt ctgtatactg cacaagggaa aagattttaa atatataatt
      481 atatctcatt aatactcagg ttttatttcc tttcaatgga acaggactta ttaaagcaac
      541 catttaccgc atgttttctt ttagtgtttg gccccagcat aatcctgtgt gcattgtacg
      601 tgtaaatatg tactaacctg agtatatgga aacacacact actgtgtata attccactgg
      661 tataaccctc cttatgcatg agatgttttt ataatgtaaa ttgacaaag
//
LOCUS       KCOD01003519             454 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 391374pyr ultra-conserved element
            locus uce-826, sequence.
ACCESSION   KCOD01003519
VERSION     KCOD01003519.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 454)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 454)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="391374pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>454
                     /note="ultra-conserved element locus uce-826"
BASE COUNT          106 a          106 c           98 g          144 t
ORIGIN      
        1 aaaattgagt ggctgattca gtcttccatg cccccagctt cagcctctgc ttctccccat
       61 aacaccagca aagttaccct catggcttag tcctatctat ctgtgtatgt ctctgttttt
      121 ttttctccag agtgacttgt ttgtgctgtc atcagccgtt gttttggtaa atggtgagtt
      181 aaacagatat atccaagcgt aaaatctaaa aaatgttccc tgtgggcgcc tggggggtgt
      241 tgtttgaaat caactacata tcaattgagc ggcggcgagc ggatccgatg ataaattcca
      301 gtccacagac gccttataaa ttacattttt ttgttcacga tctagcctca tctcagctcc
      361 ccagaggccc ttagactgag aactatgatt gtgttggaga aatgtttgct cagcttgagc
      421 gatgccatta gtgttacatg tgccaggccg ctct
//
LOCUS       KCOD01003520             642 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 391478pyr ultra-conserved element
            locus uce-6635, sequence.
ACCESSION   KCOD01003520
VERSION     KCOD01003520.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 642)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 642)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..642
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="391478pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>642
                     /note="ultra-conserved element locus uce-6635"
BASE COUNT          173 a          162 c          128 g          179 t
ORIGIN      
        1 tggctctcag cccccgcttt ttaatcataa tagatcattt tccgatgtca gaggaaagca
       61 cgtttttatt tggcgcacct attttcacat catgggcacc ccctgctcat tattaataaa
      121 tacacttcga tttatcacag tttgagtgcc acggggagcc tggggcaaaa ggagacaaat
      181 tcttttctta agttgttctg aaaggtgctg ggctccccga ccctcacccc cattaaccca
      241 gcacagctag tgcgctccta ctgggagctc cacggcctgt gcagcggcaa actcggactg
      301 atcttgtgcc atctcaatat atttgttcat tatcttgcgc acacacagaa gcatttggaa
      361 atgtactcgg ggcacaggcc aaattgaatc atctgccttc attttccaca cgatctgaag
      421 ctacagctgc tacaacaggc tgtgggattt ttattttcct tccttaacag ctcgctctta
      481 aagtcacagc agtctcattt taaatcttgg gtttgtatct gttttgtaca aaacgggtgc
      541 atacacacaa agaaattccc agcaactgcg cagttctgaa ggaaagacaa agcaaaagcc
      601 tcagggagag acataattaa aatattcatc tcagagacgc ct
//
LOCUS       KCOD01003521             454 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 391585pyr ultra-conserved element
            locus uce-7596, sequence.
ACCESSION   KCOD01003521
VERSION     KCOD01003521.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 454)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 454)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="391585pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>454
                     /note="ultra-conserved element locus uce-7596"
BASE COUNT          162 a           68 c           80 g          144 t
ORIGIN      
        1 tgtgttcaag aaaattagtg cagctaatta atgtcaactt tttaacataa atattaagtc
       61 ttctctcctg ctaactcttt gttttatttc atctgtcagt gagaagaaga aagagaaaga
      121 gcgtgaagaa ctgtggaaaa aactggagga tttggaatta aagagaggtc ttagacgtga
      181 tggaataatt ccaacttaac aacaaaacag cattattaac ctgtggagtc acacatttat
      241 gtagtagaag atggagcaac agttttctgt attgtgcaac tttacagtag atttcacatt
      301 tgtttcatta ttacaacagc actgtatata cctgtctcta agtaaaggaa aaaaataagg
      361 actttaatcc aaagtttgga caacagatgg acttctcaga actttgcaaa cataatcatt
      421 gttttaaccc ttctttaaaa aaagatctgt tgat
//
LOCUS       KCOD01003522             712 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 391784pyr ultra-conserved element
            locus uce-4114, sequence.
ACCESSION   KCOD01003522
VERSION     KCOD01003522.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 712)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 712)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..712
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="391784pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>712
                     /note="ultra-conserved element locus uce-4114"
BASE COUNT          218 a          153 c          134 g          207 t
ORIGIN      
        1 ccactgccat ggcagagccc atcttttcag gaaagacata attagaaaat cctggcattc
       61 attcagttaa catttgttct aaatgtactt taacaataag gcccattttc ctctagaaca
      121 agacccaggc ttgaggaatg ttcctcctcc taccctgacc acgaaagcat ttgaaagctc
      181 acaagtaaat tgctggacat gagacccctg attgctgtgc ctacacgact catgattgat
      241 ggctctaatg aaattacagt tttcctttct atttctggca ttagtcaagg cttcatgtcc
      301 aaagattatt ccaccagaca tgttctgcgg atgtgatggg attagccaaa tttcaaagct
      361 tatttttgac ctccagcaga aaattgagca catacgctat tgaagccaac tgggactata
      421 gaacatcaag ttgattcatc aaattagctc aaactgcatg actggctatg gaagttgtca
      481 gctataaacc tgtcaaaaag ccatcagctt taatgttaaa tagagacaca aagtaatgtt
      541 gttcagaatt tgacatttgt tggacttacg cctgctaaag gatgctatct gctttgtttc
      601 ctcccaaaaa atgtgtagtc tgaaatacag ccttgagaga ttgctggaga caaaaaaacc
      661 ctggttggta gaaatgccag ctttaacaaa gcagatatgt ctgttctgcc tc
//
LOCUS       KCOD01003523             631 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 391895pyr ultra-conserved element
            locus uce-90, sequence.
ACCESSION   KCOD01003523
VERSION     KCOD01003523.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 631)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 631)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..631
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="391895pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>631
                     /note="ultra-conserved element locus uce-90"
BASE COUNT          195 a          132 c          118 g          186 t
ORIGIN      
        1 tcactcttgg tttaaattta gtgttacaaa tgaaattatt aaagagttgc atattgctct
       61 atggcataga gacctcctcc tttaactccc cttcctctga aagccaagta tttggaattg
      121 gggttagtgc ttcagctgtc actacaaaat acccttcctt ttattcccag catctgaagt
      181 tacagaacga attgccatta gcagcagctc aaagtctgag gtcaaagaaa agacaaaacc
      241 taacaaagaa attgatcctg gggcacctat ggaattctat aatcagaccc atattctaga
      301 cacaagcatc ctcagcaaat cgcctctgaa atgtaaaaat ttaatttgtc aacatgttta
      361 catcatatct tcaatcactg tccaggcagt ggcactgtgt ggggacacag ggctggagac
      421 gccaggcaca ctgaaatgag aagacgtgga ctgattagag ttcactctgg gtagaattgt
      481 ctcggacagc tcagcaatca gattattaac tctgatacca gatactctat ctcttcactg
      541 ggattagcat gaaaattttg atatggatcg ataagcaatc tttcctttat aaagaatctc
      601 tgcaagcttc attaatctgt gtgtatgttt a
//
LOCUS       KCOD01003524             264 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 392002pyr ultra-conserved element
            locus uce-1394, sequence.
ACCESSION   KCOD01003524
VERSION     KCOD01003524.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 264)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 264)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..264
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="392002pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>264
                     /note="ultra-conserved element locus uce-1394"
BASE COUNT           90 a           47 c           43 g           84 t
ORIGIN      
        1 cttatttaaa tattaatcag tcctctttca attaggacta atttgcttca cagggtttct
       61 ctcatcttct gattgcagga aaatggaggt aacttgcaac gtttgaggat aattaacatg
      121 gtatttttat aatactgata catcaaatgg gaccttaatg aaccccgctg attccattta
      181 gtaaagcatg cctcaaagtt ataatcaaga ggaaagccat tgccatctgt ttaaaatact
      241 aaggagcaca atttaaacac agaa
//
LOCUS       KCOD01003525             666 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 392113pyr ultra-conserved element
            locus uce-784, sequence.
ACCESSION   KCOD01003525
VERSION     KCOD01003525.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 666)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 666)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..666
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="392113pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>666
                     /note="ultra-conserved element locus uce-784"
BASE COUNT          181 a          158 c          130 g          197 t
ORIGIN      
        1 aggctgagga caaaattaaa gactggagtc agaagtttaa tgcctgagtg ctcgttttga
       61 actgtgacct aaggtttggc tgggcactaa ccacagcatg cctcatcagc tcctgtcacg
      121 ggtaccccgg ggcatacctc cagcagggag ccagctccag agccgctcct caaccaccag
      181 ctcgctcaca cactactgag accctgccga gaaatcagca tgcaacccga gaaagcatcc
      241 tttcctctgg aataaaaatt aatattactt gtcatatttc atgtctgagc tcttttcatg
      301 ctttatcctc tgtaatgagg gctaaattac caatattagt agattttcat ggctagcaca
      361 gaaagagctg ttaccagaat aaatgtttgc attgcttctg ttggacacag gctttgctaa
      421 tgcagctttg ctaattattt ctaaataggc aataatctgc atcccctagt gctgggtagt
      481 ggattggcca cgtacctgct atttccctta tttacatgtt ttacaacttt atcaactaca
      541 ctaattacac tctgaacact gtttaaaatt ttctgttaat agagatacaa tgatgcacca
      601 gaggatgtgt atttatgcca taattacgcc tctgttcctg cgatgcagtc tccaattagc
      661 tgtcga
//
LOCUS       KCOD01003526             502 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 392225pyr ultra-conserved element
            locus uce-6270, sequence.
ACCESSION   KCOD01003526
VERSION     KCOD01003526.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 502)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 502)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..502
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="392225pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>502
                     /note="ultra-conserved element locus uce-6270"
BASE COUNT          153 a           79 c           96 g          174 t
ORIGIN      
        1 aaagaaaagc ttaaagaaag attattgaag gccatcacat atgccaaagg atttggcatg
       61 ctgtaataag aaaagggatt aaaaaatgat ggtgatgatg tccctgtcca aaaaggccat
      121 aagatagtga gctacagtag tcacctgtgt ttgtgcctcc cttctttact ggggacattg
      181 ggctggaaca gcagatttca gctgcttata tgaacaaaat ctttattttt tcttttagcg
      241 tgaaagtgtt acatattctt tcacttgtat gtacagagag gttttcctga atatttattt
      301 taagggttaa atcacttttg cttgtgttta ttactgcttg aagttgagcc tttttgagta
      361 tttacaagaa aacaaactgt actctcccaa ggaaaatatt gccatcattt gtagaccatg
      421 taaccttcaa gtatgtgcta tatttttgtc cctgtatcta atcaaatcaa gaactgtact
      481 ttttgaagag tttgcttttg aa
//
LOCUS       KCOD01003527             644 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 392332pyr ultra-conserved element
            locus uce-3250, sequence.
ACCESSION   KCOD01003527
VERSION     KCOD01003527.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 644)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 644)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="392332pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>644
                     /note="ultra-conserved element locus uce-3250"
BASE COUNT          183 a          131 c          151 g          179 t
ORIGIN      
        1 gagtacacat gaccatctcc tgatgtgatt tacatgcaga ggagaaagag attatttaca
       61 agacaatgag aagaaattca aggcctcttt tggcccaaac tccctgagca cagtgggttc
      121 ctgttttcca tcaaatccat ccagagctct gctgaagaga aagtttcatt cgcatgtgcg
      181 tgagcatgtg tacgcgcgtg ttctaagtgt tttgcattat gtgagctctg accttcagag
      241 gggaacagaa ggaatatttt cccccctgag gctagagttg tcagtgaaat gtctgtcttc
      301 cttaataatt tcaatccggg tgacagggga cagggcattt tgctctgaac gaacgtactg
      361 taaaaactgt cagatagaat ttgtctcaag aagcaacatt tctatccatt cggggtcata
      421 attacaggca tcttatgacc tgtggagcag tttttctcaa ccgaaaaaaa ggagtcctaa
      481 aataggtggt ttggtcttct gcagagcttt ggattgaacc taaatggaat ctaacaaact
      541 ctgcagcaga atgctttctt ctgtttgctg gctgcatcca gaacaaactg tgcactgaag
      601 tgacgtagca gacaagacag aaattgccat tcactgggct ggag
//
LOCUS       KCOD01003528             510 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 392444pyr ultra-conserved element
            locus uce-6079, sequence.
ACCESSION   KCOD01003528
VERSION     KCOD01003528.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 510)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 510)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..510
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="392444pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>510
                     /note="ultra-conserved element locus uce-6079"
BASE COUNT          136 a          111 c          107 g          156 t
ORIGIN      
        1 tgcattagtt aggctgaata ttgacttaag aaggtaaata actcaaggcc attcctttaa
       61 tgatttaaaa ttactgagtg tcagtgaaca ttaatttata tatgggcata tgcgtaagaa
      121 cttaccattt tcactgtcgg acttgttttc atgttcggta tcagtcagag tgagggctga
      181 gttggaacgg ctcgacagac aggaactgcg ccctgatttg acccccctgc cccaaagtct
      241 catggcatgc tctggagaca tcactccttc attttcagta tcagcatctg accctgcact
      301 gatagagtaa cctctgtggg ggagccccat ttccgcacaa aatgccagtc ctcgacgagc
      361 tgctggttca caaactccta actgccttag ggtaaaattc tgtcctgatt aggggaaaag
      421 gtgagaaatt tttaattaaa ttgtctcaga tgtgttttgt caaaattcca cctgtattac
      481 aatcaagtgg attcttttgt ctccagctct
//
LOCUS       KCOD01003529             468 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 392550pyr ultra-conserved element
            locus uce-3060, sequence.
ACCESSION   KCOD01003529
VERSION     KCOD01003529.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 468)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 468)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..468
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="392550pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>468
                     /note="ultra-conserved element locus uce-3060"
BASE COUNT           85 a          137 c          127 g          119 t
ORIGIN      
        1 gcgctcgcac aggtatcggc tgacgctgct gcggcacgct ttatttcaaa gaagtagcgg
       61 taacaatggc tcacagtaat aacagcgctg ccgcttcccc cgggggaagg cgcagaatgc
      121 tatctcgcca catgatctca tttcttttaa gctctgcact aaccgctgac atatcgcata
      181 aatgcctcct ttattacctg ccagggattg tcttctgtgc tgggaatggc ctccggaacc
      241 cacgtcctca tgccagccaa gctgcctgcc tgtgaatttg tctctgtctg gcgctccggg
      301 aggcacctga gcatcctggg ttacagctct gagacgcctt tgttcgggtg cctcgggggc
      361 cggcagctgg caccggccgg ggctctgttg ctctatttgc caagtcagta atttgccatt
      421 ttagtcagtg gtgtccagcg ggtaatgtag cctggccacg catccctg
//
LOCUS       KCOD01003530             757 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 392660pyr ultra-conserved element
            locus uce-7027, sequence.
ACCESSION   KCOD01003530
VERSION     KCOD01003530.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 757)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 757)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..757
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="392660pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>757
                     /note="ultra-conserved element locus uce-7027"
BASE COUNT          228 a          151 c          166 g          212 t
ORIGIN      
        1 tgatgctaca agaggaataa ctttcagttt ccagccaccc acagaaggtg cagtgtctgg
       61 tttgtgtgct ttgtgtacgt gttcattata tattattcac caacatacta actacaaagg
      121 cagatagttg ccatgtttga taggttaatt ttaaaggggt tttgttagca aacaagactt
      181 agaaataaag cagcccaagt ttggttccag ctttcccagg gaggagctgc ttgcatcttc
      241 agcaagaatt caaatgaatt gaaaattcct ttagaactga cagcccaagt gtaagaatga
      301 taaacggctt tggccttgat gatttttatt aagcactaaa tgtcacattt aacctgcatt
      361 actgaaagca attacccatg tatcaacagt caagcagtgc agagctagac gcctgaagca
      421 gtagcattat gctccatctg ggaataagga ttttcaatta gaaggcaaat agctggagag
      481 gggatcaagt cctccagtgg ctcccaaagg aggtctatgg gaagcaaagt cttcatatcc
      541 aagtaatcgc aggcaatgtc aacagagcat tccaaaccat ctgctgccag agtggcgttt
      601 actttatcaa atctcaatat ttacagaaca ctgatcagct cgtgggacca ggatggctca
      661 ctgccagggt gttctgggaa attcatttta aggtgtgttt cagtaggcta attaatttac
      721 aagcacctgt ttcatcactg ggagctgtta gcacacc
//
LOCUS       KCOD01003531             516 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 392759pyr ultra-conserved element
            locus uce-3527, sequence.
ACCESSION   KCOD01003531
VERSION     KCOD01003531.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 516)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 516)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="392759pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>516
                     /note="ultra-conserved element locus uce-3527"
BASE COUNT          189 a          110 c           78 g          139 t
ORIGIN      
        1 atagatgcag ggtagcttat gtgcaataca taaatatgaa ctatctgtac atgtttgcat
       61 atctaataac tcagaagtac aaagtaaacc tgatgctttt aatagtgaag taaaaaccaa
      121 gactgaacag tggcaacaac cttgtgtaca ttctatttac agagaacagg caccacaaca
      181 ctagtctaaa ccgtatttca caagtttcat acatcacaaa aaccccttcc attataacac
      241 agaagtgata ttaccagaca agcatcagtg aagaatactg ccttttctag agttgttatt
      301 gtacaatgcc gtagataatg cagcccatgc aatacaccca agaacactac agtcctatac
      361 ccaagtacaa ttaaagcagc cctccaagag ttgttccagc taccatttaa gtctacagca
      421 gccatgttag gtatggtttt ccatgcagaa cggttacatt taaaactaaa aattaattct
      481 taatattctt ctgaacttgg aacacacaga acataa
//
LOCUS       KCOD01003532             674 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 392864pyr ultra-conserved element
            locus uce-3662, sequence.
ACCESSION   KCOD01003532
VERSION     KCOD01003532.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 674)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="392864pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>674
                     /note="ultra-conserved element locus uce-3662"
BASE COUNT          232 a          126 c          115 g          201 t
ORIGIN      
        1 gcactttagc ccacagaaat tagagatatt aaacctaaat cattgcctag gtttttgcaa
       61 tgcaaattca cttctgggca catttttaaa tggcatatag tatttcctcc aaattgtatt
      121 agataaagtc atggactgtt acactgttgt cattcagctc attttgatga aaaagcaatt
      181 acttacggca gattaatgca aagactggac ataatcacag taggttaggt tgagacttta
      241 ttagaaaaac acaagccatt taaattaacc caaatgacca gcatgtcagt tcaaagggaa
      301 catgtgcttt aatttgttaa actgtaacct ttgctatatt agaaaaatac tttgacacaa
      361 acactttaca aatgtcagca gaaaatccat actccatttc ttcacattgg ttttgtgaca
      421 cagtgtttgc tgatattcgt caagggataa gttacgattg atttccttcc acccttactc
      481 ttctcctgta ttatggcgaa ttaaagggca aaaatgacct gcccagacta ttcatatgga
      541 tatgctatca taggtaaact taactgcttc ctggaactta aaggtcaaca tttcaatggc
      601 aaagagaagg ccagagcact ccaagactga ggagcaaaag taatgcagaa aacagaacac
      661 ttgatttaaa gaat
//
LOCUS       KCOD01003533             751 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 392972pyr ultra-conserved element
            locus uce-2655, sequence.
ACCESSION   KCOD01003533
VERSION     KCOD01003533.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 751)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 751)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..751
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="392972pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>751
                     /note="ultra-conserved element locus uce-2655"
BASE COUNT          225 a          132 c          176 g          218 t
ORIGIN      
        1 acccccaggc ttcccaacag ctctttccag caggagctgt ctcggagctc ttagcatcac
       61 caaataattg aggttgtcac atctcttgtt cattgttttt tccaagcctg gaaaaaatgc
      121 aaatatttca ttgtagtcat taattttccc atccttttct tcaagcatct cattggtttg
      181 atctgatgaa aagggctgaa ggcattattg caaacacagt ggcatccagg ttctgcctat
      241 agtggggaag aatctcatca gataaagtct cagggaggtc atcaatcaca gttgctgaca
      301 accattttgc cttcgtttgt tacagatgtg aacatgctta attatttgta gtgtaattag
      361 ttcatgaaat gtcaggaaat gtcaaactgt gttcacagca cagatttctg cagcaaagag
      421 caatgagagc aagtgtcagt gggagacatg gagaactgat ggggggaact gtgtctgcag
      481 gcaaatgagg gaaatagctt gggggacaaa tgagggtcaa aatattaaga ttaaagtttt
      541 gaaagggaga ccttcaaggg agctgagtaa agtgggatgt gaatgatgtt accatgcagc
      601 agcatttcaa gcacatgtct ggagtgggag gagggaagtt aaatcaatat ttactcttgt
      661 tttaatttga tttgtgtaaa cattggcttt tgacggcaga tctttagaag aaattcagca
      721 aaattctacc cacaagtctc tgacactgaa a
//
LOCUS       KCOD01003534             714 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 393079pyr ultra-conserved element
            locus uce-6110, sequence.
ACCESSION   KCOD01003534
VERSION     KCOD01003534.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 714)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 714)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..714
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="393079pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>714
                     /note="ultra-conserved element locus uce-6110"
BASE COUNT          220 a          133 c          132 g          229 t
ORIGIN      
        1 gatcaatggc tgttcccttc ctcatatcaa tttcaaagag ccaggaaata agactagata
       61 tgcatcattc tagctacaaa ataaccaaag aaaaagcaat caagcaacaa taagaccaca
      121 ttacacaaat ggaacatcat gctcatctgg tttaactatg acaccaagtt ttagttggga
      181 tgttggtcaa ctttaaaaac cgtggtaaat gtgaatatgt aattgcaata gttttttcct
      241 aatttttttt tctctctatg ctggatatta gaacttggag ctatacttgt tacaatacag
      301 tgtcgcacat ctttctacta gaaaaaatta ataaagatcc tttacccgtc tctttaagtt
      361 aaacgtgtga catcataaag ggtgtcaaat ggctggatgg ttttacagtg cacacttatt
      421 atatactgta atatggagtt ttgtccttga cagatctgat ggtgttttct acattatttc
      481 ctttcttcac ctcttcttcg gtggattagc tgtgcgaggt ggagtgactg gacgcccaga
      541 attcagtcca ccatactggt acttggcttt cttttcagat ggtttcaata tcttagagaa
      601 aataaagaag ttcctttgag tcagcaacaa gcccacagga aaccttgttc aataggaaca
      661 agagggtgag gatagtgggg aaatcacatc acaatcctgt tcttagttct acat
//
LOCUS       KCOD01003535             729 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 393190pyr ultra-conserved element
            locus uce-1561, sequence.
ACCESSION   KCOD01003535
VERSION     KCOD01003535.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 729)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 729)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..729
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="393190pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>729
                     /note="ultra-conserved element locus uce-1561"
BASE COUNT          208 a          133 c          148 g          240 t
ORIGIN      
        1 aaatgttgat gaaccaaatg tacaaagagg ttttttctca cagcattctg tacacttaat
       61 gtttttcaaa atttgtctga tccgaactcg agttactatg tgttatcaca cctttaaatt
      121 gaattgggct tgcatgttca ttcagctttc ccttcacgca cacattaatg tttcatattt
      181 atttcttcct cttcaggtgc aatctagctc ctgtggtgga gtttgctgcc gatgtgggaa
      241 ctaaatctga ttttattacc atgaacccat cagttgtaca aagagcattt ggaggctttc
      301 ggaatgagag tgacagagaa aaatttgtgc atagactatc catgctgaat gacagtgtcc
      361 tttggatccc agctttcatg gtcaaaggtg gagagaagca tgtggagtgg gttaatgcac
      421 taatccttaa gaataaattg aaagtgcgaa ccgcctatcc atcactgaga cttattcatg
      481 ctgtcagagg gtaagtgtat ggaaaagact ggtctgtcct tagtacaatg ataactagaa
      541 ttcctagcag ccagatggta tttcccgatg taatggattg catttctgat aattttgttt
      601 ggtaacaagt gttgtcattt agccagctct gcagctgaaa tgcgcacaat aacttttcct
      661 gtatcatcat tgtgataagc taatcttaaa aatactctga attcagtaca atgaaagtgc
      721 tacatgttt
//
LOCUS       KCOD01003536             336 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 393298pyr ultra-conserved element
            locus uce-6174, sequence.
ACCESSION   KCOD01003536
VERSION     KCOD01003536.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 336)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 336)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..336
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="393298pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>336
                     /note="ultra-conserved element locus uce-6174"
BASE COUNT          100 a           58 c           65 g          113 t
ORIGIN      
        1 aaaaaatgat cagtaaaact tccagagtca attgattgtc ttatgactta atgtacacta
       61 tacatccatt atgttgtata aaaatgtaat cccaatactt ttaggctggt gcgtggcctc
      121 taactcaggc tccttcttct acatttgcaa ttcctcagga actggaaaaa agtgtacaga
      181 tggtaggtta gtaggaggct tcctgtaaac atgtggaaaa tgtacaataa ctccaaatgc
      241 tcgagcttct ttattttgat tgtaaatcat ggctgtcgtg tttccagtca atgtggaagg
      301 gttgtccaaa tactttactg tatgtatttg tatagc
//
LOCUS       KCOD01003537             730 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 393409pyr ultra-conserved element
            locus uce-6482, sequence.
ACCESSION   KCOD01003537
VERSION     KCOD01003537.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 730)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 730)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..730
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="393409pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>730
                     /note="ultra-conserved element locus uce-6482"
BASE COUNT          219 a          150 c          125 g          236 t
ORIGIN      
        1 ttacaagctg agacagaaaa caatgtttcc attcttcaag caattaatta ttgtgattaa
       61 tgtattcccc cttctctaag cacaattctg ccaggcagag tcagcccatt gacatattgt
      121 agaattataa tgcatatcta attaaaggtg acctgaaaag gcagggtgtt tagcctttcc
      181 tgtcaggacc aagaaactgt taatcagaaa gtgcttgccc accccacctc ccttttttta
      241 tttttgtgct aatttcaaat cttctccctg catcagtgag cagatgagat cttcagccag
      301 ctttcatctt tcagaaaaat gaatagtgca gaaagaacat tatcaaatga gctgttgaag
      361 aagtcagtga atatgtcatt gagtgtgact gcttccagaa tgaatttaga tttatctctg
      421 ttatctcccc tctcccgact cactctccac actctgtttg cactcagtcc acatgtcaag
      481 cagcgtgggt cataatgaat cataagggac agttacttgt agaatagtga caggtccaat
      541 tgtgatacaa cttgttctgg aattaagttt gttaacatta taaattgtct catttgacca
      601 gaggtttaaa cacctagaag cttttatgca tgcaatttct taaagtattt cttttccatt
      661 aggcagctgc tgctttacag tattccacaa atgaaattgt tttatcacat caatagctgt
      721 agaaaacaac
//
LOCUS       KCOD01003538             579 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 393515pyr ultra-conserved element
            locus uce-178, sequence.
ACCESSION   KCOD01003538
VERSION     KCOD01003538.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 579)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 579)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..579
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="393515pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>579
                     /note="ultra-conserved element locus uce-178"
BASE COUNT          171 a          135 c          120 g          153 t
ORIGIN      
        1 tctctaaaat gcctttccct gtggcttaaa gtaaagattt ttaaaataaa ttaatacagt
       61 ttatgttggg catctaccac ttgaagggct aatgattatt gactaccctc cagcagacat
      121 cagggagtct agcctcaggc ccttcccgct cgcccccaaa catgccgaat gttaacacat
      181 gtttctagat cctggctggg attggacaca aacaaggcag tcagaatgga ccatttagtg
      241 tacaagtcaa gatgacagat ctctgcttaa tacaaggaag acaaaaattt gtatcttatt
      301 gaaaaaggca gaagagcccc gggtgctttc gctttgtgat tctgcagcaa aaagtgggtt
      361 gtgtcaatat aagtctatgt cacccgctcg cagctgccac actgaattga ccctgctagc
      421 tgtagacaga aaggccttcc atttccagac tctctctaat gctcatctgc gagagtgagc
      481 atgaggtggg ccaacaagtt actcctaagt atgggagtga aaaacaaaaa tgtcttaacg
      541 ctgtgagact ctccccactc actctttcta atgaaacac
//
LOCUS       KCOD01003539             646 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 393624pyr ultra-conserved element
            locus uce-6940, sequence.
ACCESSION   KCOD01003539
VERSION     KCOD01003539.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 646)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 646)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..646
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="393624pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>646
                     /note="ultra-conserved element locus uce-6940"
BASE COUNT          213 a          115 c          126 g          192 t
ORIGIN      
        1 gaagttgctc agaagaaaaa atgtcctcag agttggtcaa agataaatta aagttgttaa
       61 cttgcaaagt agatcactga gtgtctttgg cacccttttt ggtggtggtg acatcagact
      121 ttaatttacc aggctaaata aacctttgtt tttgcattcc catacccatc cttcatactt
      181 tattggctat acagtcagca gaagacacca aagccttagc aacaagatct tctgatgtac
      241 aaacaaaatg catttaattt gactcagtgt attacaagca ttataatccc tcttctgatt
      301 tcaacatgat cgactaatct catctgctca gagggataag ccttgtctca gccatgatga
      361 caggcttaga gaatgataaa aattagggca ttctcacaga ttatatactg taacaacaga
      421 taaggcttat gaataaagaa ttgactacag gtggttattt gtagaaatgt actagattaa
      481 ggggttaatg ttggagaagt acaatgtcat ttgtagttaa atcatagata cacacaagtg
      541 tgggaaaatc tttttcgcct gtgtaaacat caggggagat gaagcaaatt tcatagctcg
      601 tttcacaagc agtcagaatg agcaagtacg ttcccgggat aaccct
//
LOCUS       KCOD01003540             568 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 393735pyr ultra-conserved element
            locus uce-136, sequence.
ACCESSION   KCOD01003540
VERSION     KCOD01003540.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 568)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 568)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="393735pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>568
                     /note="ultra-conserved element locus uce-136"
BASE COUNT          162 a          126 c          128 g          152 t
ORIGIN      
        1 gctaaattgg cctcttgtag attctgcgag tcaacaactg gctaagcagt ttaaacctct
       61 aagtaaggca caaacgttat aggcaaatct aatttaagct tttaaaaata ttatgggcag
      121 gtgtttaagt cgcgggcaca ctgggagggg gctgggcgcc gcttcccagg cgggttttgt
      181 tcagccaaga gaggccaaat aaacagcatc tggggatttt caattacaga ccttcaccca
      241 gcatgcctgc actgtaatct ctaccagatg aggctcaggc ctcactattt tcaataattc
      301 acacactgtg tacacataac atgacaataa gggcattcat gcaaccgcct gattcgcaca
      361 tcaaagctcc caaatggcca gctgtaagca tgcttactgc tgaataattc attcttttca
      421 caggcttgaa aaaacgctca gcgggagttg gcaagcttgt gttctttcct gtgtggtatg
      481 ctaaactcaa attttgaaag aggtacagag agtcagagat acaactattt aaatgtgcat
      541 ttgcgagctt tcggatggct gctcacag
//
LOCUS       KCOD01003541             664 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 393847pyr ultra-conserved element
            locus uce-4754, sequence.
ACCESSION   KCOD01003541
VERSION     KCOD01003541.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 664)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="393847pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>664
                     /note="ultra-conserved element locus uce-4754"
BASE COUNT          189 a          134 c          158 g          183 t
ORIGIN      
        1 aaactggcca tgtagccatc aactgcagca agaccagcga agtcaactgc taccgctgcg
       61 gcgagtcagg gcaccttgca cgggaatgca caattgaagc tacagcctaa ttattttcct
      121 ttgtcgcccc tcctttttct gattgatggt tgtattattt ttctctgaat cctcttcact
      181 ggccaaaggt tggcagatag aggctactcc caggccagtg agctttactt gccgtgtaaa
      241 aggaggaaag gggtggaaaa atcaactttc tgcatttaac tacaaaaatg tttatgttta
      301 gtttggtaga ggtgttatgt ataatgcttt gttaaagaac cccctttccg tgccactggt
      361 gaatagggat tgatgagtgg gaagagttga gtcagaccag caaaaaccct ctctgggtta
      421 cagggaagtg atcctatgca ggaggtggaa gtgtctaaac ttcctcattt ttattttact
      481 acaatggcct tggattgtct gacctcagta gctgttaaca ccatctgcat caggccctac
      541 ctagagcatg tagctgagtg ggagtaaaca aacaagatgc acatgcctgt taatggccat
      601 gagagagaga gagaaatctg aaataaatct aaaagaacag taattcagtc agtgaacgtt
      661 aatg
//
LOCUS       KCOD01003542             760 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 393958pyr ultra-conserved element
            locus uce-3845, sequence.
ACCESSION   KCOD01003542
VERSION     KCOD01003542.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 760)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 760)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..760
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="393958pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>760
                     /note="ultra-conserved element locus uce-3845"
BASE COUNT          263 a          158 c          125 g          214 t
ORIGIN      
        1 tttttaaggg tcttagtgtc accttttcag ctcatttgct cttttcagtt accaagaaca
       61 cataggaaat aaaaaacaga acattcctaa acaagacatt cttacacgtt atggaaatga
      121 cataacaaac accaccacag ttcaacaaag cagttatgag ccctgtagct ttttaagaca
      181 ttataaagaa gcaaagaaaa ctcagatatt gcatgatctc aagctgttta aaatgaaagc
      241 tgctaatcta ctttccaagt gaaacattgt aggtgattgc tctaacctgg ggcacagtac
      301 attctctcta tggcatcgtt gtcacaggaa tcttcaacct ccctccacct gctaaaatac
      361 gttagctgaa tgtgtcctaa aaacaaaacg acaggagaaa tcaaaacatt tttcccttcc
      421 attttctgca gaagtgaact gtaattactc cttttgtagc taaaaacagt atcattaaga
      481 ataatggcat cattaagtac tagaagctat tactgggggt gaatttgctg cactgataat
      541 gaagctctag acaggaaatg aagatactaa ttacaagata aaacgcctac tcagttaatt
      601 ggaagcaaca gcgaataaaa agaaatgcat ttgcaaaagt tcctgacctc tatcattcaa
      661 taagatgttg tttgggttca aatcgcggca cacaattcct tctctatgta aagcatcaag
      721 ggctaccacc atttcagctg cccatctttg aatgcaatcc
//
LOCUS       KCOD01003543             500 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 394069pyr ultra-conserved element
            locus uce-4005, sequence.
ACCESSION   KCOD01003543
VERSION     KCOD01003543.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 500)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 500)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..500
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="394069pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>500
                     /note="ultra-conserved element locus uce-4005"
BASE COUNT          154 a           92 c           75 g          179 t
ORIGIN      
        1 tttgaataga aaactgcatg gttttagaca agtactcatc ttatttttca gtctcctttt
       61 ccttcactgc tgagaaccac acaatgtact tccctgcctg ttactaaaat gcttctaaaa
      121 atttgaagaa ttatttgaaa aagggcattc ctattcctta tgcataaaac atgcatgcat
      181 attcatataa aacatttaga aaaatttgta ccagttataa ttagcatgtt ttgtgcatct
      241 attttctttg ctattaaata acaaatttgt ggtaaccata gtaactggaa catcacatga
      301 tactggtgct attttgggga taacataagt acctttctta aagaagcatt ctcacctcta
      361 agctatgaat ttcaataatt ttcacgataa agtatttgtt gagtagattg tattcatccc
      421 tcactctaac gttgatctga cgtggaatgc acttgcagtg cctacgacca cttaaaagct
      481 gtgatgagtc ctcttgtttt
//
LOCUS       KCOD01003544             783 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 394177pyr ultra-conserved element
            locus uce-287, sequence.
ACCESSION   KCOD01003544
VERSION     KCOD01003544.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 783)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 783)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..783
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="394177pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>783
                     /note="ultra-conserved element locus uce-287"
BASE COUNT          248 a          153 c          142 g          240 t
ORIGIN      
        1 tttttcttct tttgcacatg aacttctctg ccttggtttt attaaatgga aatgctacat
       61 aactattgca aggagactct ctggaccaga agcattaact agctcaaatg agaaatacaa
      121 actaaaaagc tgtctgtcca ttttggaaac atgcagataa tgtgagtgtc acttgaaatt
      181 cacatgcatt tgggatcggc aaagaaaagt aatatacagc aatgatatct ttgatcatcg
      241 aaagaactca gaaacatagg aactgtgtcg agtgtggtta tcatcaaccc attttctatt
      301 cccagtgcac aaatcatttc atgcattcta caacccaagc cacgatgctg ggcttcaaaa
      361 gcaatttcag cagcaaaata aggtgctttt cttcaatttt caagccattt gtacgaggtt
      421 agtgttgttt acccacctgg tacactgata tttacatacc cctttaaaga aaattggtag
      481 gtatgattta tggagtactg taagagcaca attttccatg tagtgcacct aatctgaaag
      541 ggcacttgca aaggtcactc tggccataca aataccaagt cttctctttg gaataagtta
      601 ggatattcat ttttcttgga aaatgtcagc agtaccctac tccaggggtt agtttatgca
      661 gataaatgcg taagccttta atcttaaggc aaaaatactc tacacaaatg taagagaagt
      721 ccatctatca ctgttaagac ctgtaatttg tttttattta aatcccaagc cagggcagcc
      781 tgg
//
LOCUS       KCOD01003545            1193 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 394272pyr ultra-conserved element
            locus uce-2053, sequence.
ACCESSION   KCOD01003545
VERSION     KCOD01003545.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 1193)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1193)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1193
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="394272pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1193
                     /note="ultra-conserved element locus uce-2053"
BASE COUNT          376 a          238 c          228 g          351 t
ORIGIN      
        1 taccagaaag ctgcagtgac actacaccaa aaaagtatta aggtacttga acttcccact
       61 tcaagtagtt aatctgcatc cagtggactc catttttaaa gctgtataca cacgcacatt
      121 gccaaaataa ttgttttaag cagcttcata aggcaattgg ttaaattagg cacaccacag
      181 catttcaaca aaagacagag ttgcaaaagc tattttccta cagcatgtga agaattcaaa
      241 gtgagttctt gatttacctt ctataactgc tgctatagcc tttacctcgt ggtgaagggc
      301 catgtacgaa tctacatgtg ttcccataga ggcagttgcc agtcttcagc cagttacggc
      361 actgtgtcta agagacagac attactgggt gaatttcaca ctcctttctg gaaataccat
      421 tgggtgtggc agaacaaaca aatgactcca cattaagtcc catttatctg taatccacca
      481 gtaatataat tgattaatga gcatcaggtc tggcagaaaa aatttaggtt ggtggaaata
      541 ttatcaatat gcacagtact actgctctat ccagaagctg gcgaaacaca cggtatttga
      601 aaattctagt attagcatgt tgaacatcca tgctcagtaa catctgagca tttggtgctt
      661 gtgagctact ctttcccacc acataaatcc tggaaaagaa gatgctgggg tggggaggaa
      721 aagaagaatg cttttacaac tcacctctgc agtacttcca gtgctgggtc caagcctttc
      781 aaacacactg ggtcttcggg atgtgctatc ggatatggtc ttggtatttt ccactgtgac
      841 cttccttcta atttttgaca ttttgtacta cttcaaccaa aaaaaaaagc aaaactgtaa
      901 aatccttcag tttggggcta ttgacactga actcacatga ataaaataca agagttgctg
      961 cagaggtgat gaagaaagaa aaagaagtca taaatgagtg aaatgtatct aataacaaag
     1021 aattcttctg acttgaacta gtcagctgaa caccagtaat gataatttca ttttattttg
     1081 ctttggattc ttcagcttcc ccttgggaaa gatcttatga catgttattc atttaggcag
     1141 taaacaccac acaggacaga tgctttcttt catcatgtat ttttggtgca tga
//
LOCUS       KCOD01003546             573 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 394380pyr ultra-conserved element
            locus uce-4143, sequence.
ACCESSION   KCOD01003546
VERSION     KCOD01003546.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 573)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 573)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..573
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="394380pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>573
                     /note="ultra-conserved element locus uce-4143"
BASE COUNT          159 a          108 c          113 g          193 t
ORIGIN      
        1 tggacatgca acaggaactg tgtcatctca aatctccttg cagcttgctt tctaaaaccg
       61 aaataatatt attcaattgc tatcaaactt tatgactatg tttaaaggtt cagttcctcc
      121 tcaagtctaa aatattcatt atcatctgct cttgagacaa agaatgtatt actgcttcca
      181 tagttctgct tcacatttgt tacaccactc ctacaactta tatgtcactt gatttaaaaa
      241 taatacagtg ctgccatcac ctgccgttgc tgggctgctg tggagaatgt ctggaatggt
      301 ctgaaggctc tgacctctgg tcaggagatc gtgaacgact gcggcggggc ctgtcatgtg
      361 atcggttgga atgatctgat gccagcgact gaatttctga aatgtctgtt aaataaaagt
      421 tgttccatga aatgactgta atttaaatgg tggtgtgacc tgctcaaatg ggaataagct
      481 tttttttatg aagatgttaa atctatgctt attattacat attcctgaaa gaacagccac
      541 tttttggagg tgtggatttc attacaatct tat
//
LOCUS       KCOD01003547             707 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 394491pyr ultra-conserved element
            locus uce-5401, sequence.
ACCESSION   KCOD01003547
VERSION     KCOD01003547.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 707)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 707)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="394491pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>707
                     /note="ultra-conserved element locus uce-5401"
BASE COUNT          196 a          131 c          154 g          226 t
ORIGIN      
        1 agttactcaa gaggttatct gggaggaggg aaatcctgag caagagaaac cattggcggt
       61 caccttccat ttcaggctgt ggagactaaa atatttcctg ttctgtctca aatgaatatg
      121 tttcaatgtt caattcctgc tttgtggtat gcaactaaca gctgttgtga gtagcattgt
      181 tactgtattt gtttcatgtc acactttttt ttctttcctc tcctttgctg ttggcttcac
      241 ttctggctcc atcagagaga gctgcaggtc tttgctgccg cttagtagtc ccctgtcata
      301 aaggaatgcc aaggcttact gatctgtctg tcaaaaccaa agatgtctgg gaaattccac
      361 gagagtccct acagttgatc aagagactgg gaaatgggca gtttggggaa gtatggatgg
      421 gtatggagca aaataattat tctaaaatag ctctctgtgt ggggattaca agatggaagg
      481 tgaaaaacac tgtgacccat aagtagcaaa gctcaaactg ttaggaatct ttggaatcat
      541 gtctttgact ttgaaattct ttaatctaca actttcacta taattgatgg taaaagaaaa
      601 ctgaaattct gtgtttcctt ggaaggtctt gattttgaca aattaccgct gtcttaataa
      661 taaatcaagg ctcacatagt catctcttgg ctatgccaag aagcctt
//
LOCUS       KCOD01003548             528 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 394600pyr ultra-conserved element
            locus uce-5672, sequence.
ACCESSION   KCOD01003548
VERSION     KCOD01003548.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 528)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 528)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..528
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="394600pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>528
                     /note="ultra-conserved element locus uce-5672"
BASE COUNT          169 a           96 c           87 g          176 t
ORIGIN      
        1 ttaagcagac taaacattcc cacttgcagt cttatttaca ttattaattt gcttagcaaa
       61 tattttttta atagctagcg ccaatagaag gagtggaagc cttgtttgga gagctcttgt
      121 gaagagtgtt attttctcca gttcaagcag atgagcagac tgaaatgtga gttttcaggc
      181 acataataga cccttggctt atcaaagcct cttatctgat tggaaaaaaa atcaaaggta
      241 aacttcacag ctcatggaat taaaagacaa atgagatgtc ataattatca aagtggctaa
      301 tttagaaaat taagccattc acataggtga cataattgct tgtcacaatc actctttttc
      361 tcattagccc tctcttcagt acctaccata cagtggaaca ttctttagtc ttggaaaata
      421 ttgcctatac tgtaatccct taatagcata gcccctgaaa ttagtgcaaa aatatactta
      481 atagcttcat tgatgtgata tatttgtgtg attctctgtt ctcacatt
//
LOCUS       KCOD01003549             896 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 394712pyr ultra-conserved element
            locus uce-3302, sequence.
ACCESSION   KCOD01003549
VERSION     KCOD01003549.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 896)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 896)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..896
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="394712pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>896
                     /note="ultra-conserved element locus uce-3302"
BASE COUNT          293 a          185 c          204 g          214 t
ORIGIN      
        1 cagaatgagg ccaatcagtg ctcacaagtc agtaatgggc catcattaga aatgggtgag
       61 aacggagctc ctggaaagca gaactttgaa caaacggaca cacaggaaat taaaagtgat
      121 ttgaagaagc ccctagttaa tggaatctgt gattttgata aaggagattg ttctcatttg
      181 agcaaaaaca ttccaaatca caaaacttcc aatcatgtag gaaatggtga gatatcttca
      241 gtggaacaac aagggaattt ggatgccacg cagcaagata ctgccaaagg tgatcaaggg
      301 gaaagaattt ctaatgggcc tgtattaact ttgagtagtt cacctgttgt aagcggtaca
      361 caggaggctg caaaactgtt aacccagcaa cttagtggta ccaacactga tttacctaat
      421 ggacctctag cttcaagttt gaattcagat gtgcctcagc aacgcccaag tgtagttgtc
      481 tcaccacaat ctacagcctc tgttatacag gggcatcaaa tcatagcagt tccacactca
      541 ggacctagag tgtcccagtc taccctgtcc tccgaagttc ggtctactaa tggcacagca
      601 gaatgcaaaa ctgcaaagag gccagcagag gataatgaca gggaaactgt tccaggaatt
      661 ccaaataaag taggagttag aattgttaca atcagtgacc ccaacaatgc tggttgcagt
      721 gcaactatgg ttgctgtgcc agctggagcg gatccaagca ctgtagcgaa agtagcaata
      781 gaaagtgctg ttcaacaaaa gcagcagcat ccaaccacgt atatacaaag catggtcaca
      841 caggtatgtt gcagtgttct gtttattctg tgattctgac taatactgtg aaataa
//
LOCUS       KCOD01003550             578 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 394820pyr ultra-conserved element
            locus uce-1702, sequence.
ACCESSION   KCOD01003550
VERSION     KCOD01003550.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 578)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 578)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..578
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="394820pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>578
                     /note="ultra-conserved element locus uce-1702"
BASE COUNT          161 a          151 c          102 g          164 t
ORIGIN      
        1 gactgtttgc aaaccctccc cacagacact acagtccccc gtggtagaga atggactgaa
       61 catctcagct ctgatttcta tgattttcaa ttaaatttcc ttttctgctg gaacatggat
      121 cacctgctcc accacgcttc tgtattatta atttgttagc ttgctcgaat cacagttgaa
      181 aacctttcag ccttggtttg cagcaataaa ttcaactgac agctgaaatt tggaacgctc
      241 acttaatatt gattctgaat gtaataacaa gcgacatgac cttttggagg gtgtaaaata
      301 tggctgccac aacatctgtg ccacatttct tgctgtgtag taatatgctg taacagcacg
      361 gagctggcac tgaagttaag ctttattatc aagcagatct ctccatctct ctggcttcat
      421 tcccacagaa ccttactcct cacccccaaa atgcttccca catccagaac tcacgcatac
      481 gtcactgttt ccaagaccta attcatcctg cagtaaggaa agagatctgg actgctgaaa
      541 gagaccccct gtgtcaaaca cagcagctct agcagact
//
LOCUS       KCOD01003551             407 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 394923pyr ultra-conserved element
            locus uce-7867, sequence.
ACCESSION   KCOD01003551
VERSION     KCOD01003551.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 407)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 407)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..407
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="394923pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>407
                     /note="ultra-conserved element locus uce-7867"
BASE COUNT          111 a           94 c          108 g           94 t
ORIGIN      
        1 tccatctgat ggaatatttt ccatccctgg caatcatttt ccaagggaaa gcaggcatct
       61 ccaaggaggt gttcgtcggc agactgacag actccctaaa tgctacccct ctgaatggaa
      121 gcccttcatt tgtgcatatg caattaagca gccttagaag gaagaaagct ccaaacggga
      181 taaaaggaac ctttaatcaa gaagctgaac ggtctaattc aggataatag aggggtcctt
      241 actgtttgac acaggagggg tgggggtgct ttttgtctct gggagcgttg gcttcatgat
      301 ctaacgaccc agagcaaaag agcaggaatg caggacactg ctacttgacc tccccgtgtc
      361 acggcccagg ggccgggaag caaaggcagg agtttctgtc acttagc
//
LOCUS       KCOD01003552             513 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 395030pyr ultra-conserved element
            locus uce-4739, sequence.
ACCESSION   KCOD01003552
VERSION     KCOD01003552.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 513)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 513)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..513
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="395030pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>513
                     /note="ultra-conserved element locus uce-4739"
BASE COUNT          172 a           94 c          100 g          147 t
ORIGIN      
        1 tcataatcat ctctaaatct aatgggacac tttcatcaca gatgaaaatc ttcagcgctg
       61 ctcaaatgaa aatcaaggaa ttattacaat cccgtggttt ggcttgcagc aggcattaat
      121 cagaaatcat aataaatcca cacagcacac agcacattag tcaggcagtt ttgcatgata
      181 acgacgttga ctaatgggct ccgagttgga agggtcaatc ataaactcat caaatgcttc
      241 atttaatttc ttaatttgga caaacacgat ttgtttatgg gaaagatatc aggtgttctt
      301 gaatgaataa tggctgtgaa accaaagtcc attaatcagc gcctgattac aaatgactcg
      361 gagattgttt gttctaattt cattcatttg gggcaacaaa gagaacacga gagagcgaaa
      421 gcacttggcg aaaatggcac acttagttct ccatgtttgt tgtgataaat gggctttcaa
      481 taactaaaac aagggggtta ttacccatat taa
//
LOCUS       KCOD01003553             562 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 395138pyr ultra-conserved element
            locus uce-6777, sequence.
ACCESSION   KCOD01003553
VERSION     KCOD01003553.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 562)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 562)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..562
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="395138pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>562
                     /note="ultra-conserved element locus uce-6777"
BASE COUNT          172 a           99 c          117 g          174 t
ORIGIN      
        1 aaaaagccaa aatgctccag aggacggctt ttgttttcta cacatctcga agcaactgct
       61 tccctctgtt tgctaccttt tgacatgctt acagcgagga atgattgaat atctgattaa
      121 cttcacgtaa gaagtatttt tgcccagttt tctgacgaga tgctgaacca gtccaaatcc
      181 tttgagtctt atttaggagg taatcccacg atccaatgtc agaataatcc ccccaagaca
      241 gcttaaatat ttgtagttct ttcttaaatc aagaaatccc ttggggttta taccaatccc
      301 aatttaaaaa atgacttgac ctgaaaaccc tggaggaatg tttgaatgag gttgtcttgc
      361 ctccggcttc ttggtactct aataagacgt gaataagata tacaaggtcc taatttataa
      421 tgtgatatga aaattataca ttcagtgaaa ggctaggggg aaaaataagg gatggcaatg
      481 gtgatagaga cagcatttat tgtgattact agaagggggc cttagtgggc tgggattatt
      541 gtactttaag tgaaattgat tt
//
LOCUS       KCOD01003554             594 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 395246pyr ultra-conserved element
            locus uce-1913, sequence.
ACCESSION   KCOD01003554
VERSION     KCOD01003554.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 594)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 594)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..594
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="395246pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>594
                     /note="ultra-conserved element locus uce-1913"
BASE COUNT          116 a          174 c          118 g          186 t
ORIGIN      
        1 ttttgcttct ctcttctttg aaaaatctcc taattttcac tctgatccca gggcctaagg
       61 tgccacccca aaataaaaat gtatcctccc ttccccaggt ccaaggaagt tgttttcctc
      121 tgccttctgc agtgcaggtt aagccagtgc cagctctggt ctcgggagat gcaaccccca
      181 cttgcctcgc tccgtcgccg gcagcttttt cattatttat ttaatgtctt gtaccgtaaa
      241 taatggtgac tttatggtta ttaggaacgg gttaaggtac atgcgggcag caccaggctg
      301 ccttcaaaag gaacaggccc ggcataaaat gttgcgataa ttgctttact gctgagtgct
      361 tggtctttat tttgtgtccg atttgtctct taagccagcg taacattctc cccgctgcag
      421 gagaatgcag agagcaaatt gaaggtctga gcgtgaacaa tgcaacatgg tgcactgctg
      481 ggtttttctt ttctttcctc tttcttcgtt cctctctcga cctccctcca gtcatccctg
      541 ctccccctcc ccctctagcc tcctctccct ctctgccgct ctgactcttc cacc
//
LOCUS       KCOD01003555             496 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 395351pyr ultra-conserved element
            locus uce-3950, sequence.
ACCESSION   KCOD01003555
VERSION     KCOD01003555.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 496)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 496)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..496
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="395351pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>496
                     /note="ultra-conserved element locus uce-3950"
BASE COUNT          153 a           96 c           80 g          167 t
ORIGIN      
        1 tctcgaaacc ctacacaacc actccacaaa tctgtactac actaagatgt actttcttgg
       61 cttctctttc ctttccacct taagagttca ttatctcagc tattttcagc tggaataatc
      121 caacacaatt ctcatttgcc tgtaaagtgc agtcaatgtg aattgatcaa aaccaaatta
      181 acagcaattg gttccaatat tttccctgtt tacacattag cttgctacct ttaacatata
      241 gatgtattga attcagctta gcaacctgag catgaatgct gtggccttta aagagaaact
      301 tatctgtaat taaaatcatg cacaagtttt agtgggaatc tgtttactag ctagaaagaa
      361 agctgattct aaaactgaat agaatttagc ttagtagttc atgtgtttga ttctgaatta
      421 aatcccctaa aattacgggg agctagcttt attaagcttc agattacatg aaggttatgt
      481 ctagttctgg atgggt
//
LOCUS       KCOD01003556             752 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 395458pyr ultra-conserved element
            locus uce-3050, sequence.
ACCESSION   KCOD01003556
VERSION     KCOD01003556.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 752)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 752)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..752
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="395458pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>752
                     /note="ultra-conserved element locus uce-3050"
BASE COUNT          138 a          236 c          200 g          178 t
ORIGIN      
        1 ggctgcttct cgttacccag gagtaagtgg atagctgacc agcgctggtg cccagctcat
       61 gtgagaggcc tgccttaagc acttacttgg ttgttgtctt gttcctccca ctccatgggg
      121 cactgaattg gggtttgatg gagtttcagc tctcctttta ggaggctgct atgtcctatt
      181 cccagaccaa aatgcccata agcccagccc ttcttcccac atcacgctgg ggacgcgttt
      241 cactggggca gggaggtcac ttgctcgggg cgccagagga aagagaaaat ctctccctct
      301 gcacctctcc tgctgaccct ccctctcttc tttctctccc agttgctccc cagcggatct
      361 gggctgggcc agactctcca tgctccgatc cgggtgagtc ccggcaaatc ctggggatgg
      421 aatgggccct ccccagaggt ttttttgatg agagtttctt acagctttca atgcaggtga
      481 gcccatccgg cccatcgacc cggcagcctg ggtgtctcac acggcagcga tgactggcac
      541 ctacccagcg tacggtatga gtccatccat gagcacaatc acttccacca gctcctccat
      601 caccagctcc atcccagaga ctgaacgtaa gttcttgtgc ctccgtgctg cacccgctac
      661 acggcctcct cactgtgctg tgaagggagc aatacatctg cctggggaca gctggggtgg
      721 gccagatctg ccctgccaag ggactgggag gg
//
LOCUS       KCOD01003557             757 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 395570pyr ultra-conserved element
            locus uce-1470, sequence.
ACCESSION   KCOD01003557
VERSION     KCOD01003557.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 757)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 757)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..757
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="395570pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>757
                     /note="ultra-conserved element locus uce-1470"
BASE COUNT          182 a          202 c          139 g          234 t
ORIGIN      
        1 tgcggccggc gggcacacca ctgcacacat cgcgcacggc tgcggctacc ccgccgctcg
       61 cctggcggtg gtcagtcctc ccagctgccc tatccgttac tgtctgatta gctctgcgaa
      121 ggagcccctc cccggccagc tttccctgcc atctgttcca cacgcgatgg ctgccgccca
      181 gcagccttgc gctgccctcc tacctggcac ccggctcccg gccttacccc aaagtgctaa
      241 cacaggttct cgctgctggc agagtcagga tttcattact actactttga caagtgcagg
      301 gttgtttgta atttctcttt tatcctgatt ttgattgtac aaccacctcc cactgattca
      361 gtttgcttca gttttgttgc tcacagattt tactctccac attaatctcc ctctggcatg
      421 ttactgcatc tgttcccttt tttattatta attttcaaat tcccaccatt tttgacaaaa
      481 aggaggtaat ctacactctg cttctgccca tttcattttc tttaatttgg aagataagta
      541 tgaaagcgtg ccaaagaagt taattctccg ttaacagttt attttctggc atcctgatgc
      601 ctttgtatat gaaaaccaga tagaaataaa tgttgactga atcacaacaa catagttgca
      661 actatcccta aatttaatga aaagtaaaca tatgaaatag aattgaaaaa gtttgttagt
      721 tatcagagtt gtttcatgtt atcactcaaa ataatgc
//
LOCUS       KCOD01003558             716 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 395683pyr ultra-conserved element
            locus uce-4220, sequence.
ACCESSION   KCOD01003558
VERSION     KCOD01003558.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 716)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="395683pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>716
                     /note="ultra-conserved element locus uce-4220"
BASE COUNT          162 a          171 c          183 g          200 t
ORIGIN      
        1 gtcttttttg atcagcagca aaaagacaaa gaccagccct ttaagtcaga tgctgtaaac
       61 tgacctttgg agaaaaagga gaggtttgaa cggttttcca caaatgctaa tggcctagaa
      121 aacatgttta cccagggctg ggggaaggct gctgtgctgc taccagctca aaatgtccgg
      181 aatgacactt tcattcacag atgtctttcg tctgtgcctc agaggtctgg ggtcaaagca
      241 gcaccggcag gcaggtaggc aggggcgaaa ggtttgatca gtctgcgatg gctccgctcg
      301 ctctgcattt gtctctgagg tattgccgcc tgggggggac agtcgggctc tggtcctact
      361 cacttcctat tatccatgtg acttgtctcc gccacgctgg agtcactttg atttgcctga
      421 tgtactgctt gacaaagctg ggtgatggct gagaagtgga tccagctgct ctgaaaagcg
      481 cacacctgac atgccagtcc tggtgcgggc acatcatggg gagcattttt taattcaatg
      541 taatttatgc attcttgcag tcctgtgtgt gcctagcctg tcagccagtg cctagatgaa
      601 ggctgacagt tgtcatccag ggcctgaagg tagcctcaca taatgacaca ttagacatac
      661 taatgatgtt ttcttctggc ataatgtttt cttctcaact ttcctctctc ctctcc
//
LOCUS       KCOD01003559             219 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 395787pyr ultra-conserved element
            locus uce-2052, sequence.
ACCESSION   KCOD01003559
VERSION     KCOD01003559.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 219)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 219)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..219
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="395787pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>219
                     /note="ultra-conserved element locus uce-2052"
BASE COUNT           70 a           39 c           39 g           71 t
ORIGIN      
        1 tgattctttt tttctttagc cttcctcaca aaggaagggt attttgtaaa ttaccagctc
       61 gttcagatca acaaaaggta ctttcataga aagccccatt tgattttgct caaatttgat
      121 tacaaggatg gagaaaagga aaggaagtca aaaagaaaaa ccccagatgg ctttttcatt
      181 catctcagtg aatgagcttt atctgtgcct tttgaaact
//
LOCUS       KCOD01003560             579 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 395891pyr ultra-conserved element
            locus uce-1880, sequence.
ACCESSION   KCOD01003560
VERSION     KCOD01003560.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 579)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 579)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..579
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="395891pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>579
                     /note="ultra-conserved element locus uce-1880"
BASE COUNT          202 a          101 c          108 g          168 t
ORIGIN      
        1 taacagcata gcaactgcag cttagaacag accaagtcgg ttaatggact gttaggacac
       61 ttttgctgtg taacacattt agacgcatgt atttaaaaaa caggtggata atccaaatgt
      121 tcagttacta ggacactaac agttatgtcc atggcaattt tgtttctgtt ctttaaacaa
      181 atcatcactt gcaagcacta atgttaaaag cagaaagcca ctctagtaca cagtggctat
      241 aaatgccaaa tcaattttca gcagataata aagtccatgt tttacaatca gcaatacact
      301 gttttactac ccaaaatgta agctaataat atatagctct gctaaatgga aaatgcagat
      361 atgctgttaa gaaatgggct ggctgtgaga tgatggatca tttctgccgg gaccttctta
      421 aagctatgtg caaatgtttt gaaaatatca catgatgtgg ccatgtgtta aaaattacag
      481 ccggttaagt tctctgctaa gaaaaatatg tgggcaattt atgaaatgca ctccaggatg
      541 gagatatctt aagtaaaacc agattttgaa aacaaaccc
//
LOCUS       KCOD01003561             544 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 395997pyr ultra-conserved element
            locus uce-2657, sequence.
ACCESSION   KCOD01003561
VERSION     KCOD01003561.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 544)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 544)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..544
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="395997pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>544
                     /note="ultra-conserved element locus uce-2657"
BASE COUNT          130 a          124 c          115 g          175 t
ORIGIN      
        1 ttggaatgaa gagtcctctt ctttcagtca tgaaatgcac atgaactgca caaaacgcac
       61 ataacttttt ttattccaca cagccttctt tctgctgatt ttaattaatt gcacagaaac
      121 agagctcagt tttcttcttg tctcctgctt ccagcaaagt tttatgtctg ccctgctata
      181 aagatgaaaa aaaccaatat ttgcttttaa ggttctcaga tacagcacct cactcaggtg
      241 ggaattgcta gcaggatcgg aggtcaacca gtggagatcc cctcaggcag agcagggcat
      301 ggccagccgg gggggccagg gtggccccag taccgtggag aggatgaatg tgctaggcga
      361 gatgcagtga gtactatgtt acacatttgc atagtttcca aagtagatat gtttgggtaa
      421 ttactgtttg gaacatactt ttagttgcta ctctgacatt ctttgctttg ctcttcgaac
      481 ccttgttagc tcttctgact tctgcttgct gttctttcac ctttgctctc tcattttacc
      541 cttc
//
LOCUS       KCOD01003562             269 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 396102pyr ultra-conserved element
            locus uce-7050, sequence.
ACCESSION   KCOD01003562
VERSION     KCOD01003562.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 269)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 269)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..269
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="396102pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>269
                     /note="ultra-conserved element locus uce-7050"
BASE COUNT           78 a           61 c           87 g           43 t
ORIGIN      
        1 aaagggcatc aggcagtccc gacccggctg acaggtgtgg ggctcggcag cgcccgccgc
       61 ggcggcggga acggagccgt aattagagca aggaacagaa tgaacgtcag atgaattacc
      121 aggcagcaga tcatatttgt caggaaggat tgcatacata aaaattaagt gacagtacat
      181 gccggggtaa tgaaagaaaa atgaaagatt tgcctgtaca cagctcgtga gatgccggcg
      241 agcgccgtgc ttcgagcgcc agcgggagc
//
LOCUS       KCOD01003563             572 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 396208pyr ultra-conserved element
            locus uce-5064, sequence.
ACCESSION   KCOD01003563
VERSION     KCOD01003563.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 572)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 572)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..572
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="396208pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>572
                     /note="ultra-conserved element locus uce-5064"
BASE COUNT          159 a          115 c           82 g          216 t
ORIGIN      
        1 cccccaacta ataactgctg catttccagt cactcaaatt tggacagaat tttacttcct
       61 gtttcaaagg tcatggaaag ctgacctcaa cagcagtgtt gaggctgctg aattattcat
      121 atcattgact ttgtgtcagc ttccacattt gtgcagaggg atgttttatt catttatctc
      181 atttagggac ctgctctgca cctgtttcta ccattaagta ccctgtaatt tgcatttgat
      241 gctaatttag tttcatatca gcctggtccc ctcttgttaa tttaattttc taagaccctt
      301 ttcattacag tagaaatgtt tccctcttta aagcaaacat ctatacaagt aattgtataa
      361 actgcctttt aaataatatc ttttagaaga ttccatcgtt taattcctta attcctataa
      421 ttagccatgg tttgattaat gtttcaaagg gttaaattaa aatgcagaat tactcaaatg
      481 catacttgaa taattttccc tctgctgata acagtttctg cattgctgct tttattctcc
      541 tcgtgattct gaatattaca tgtactaaca ag
//
LOCUS       KCOD01003564             729 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 396316pyr ultra-conserved element
            locus uce-195, sequence.
ACCESSION   KCOD01003564
VERSION     KCOD01003564.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 729)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 729)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..729
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="396316pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>729
                     /note="ultra-conserved element locus uce-195"
BASE COUNT          201 a          170 c          158 g          200 t
ORIGIN      
        1 gacagaaaag gaactccaca catattgcac aaatgggggc tgtggactac aatctctgcc
       61 tttgtgccag ctgtcaaaac gaggtgcatg cttgtacaca gaaaagcagg aatatctctc
      121 aaatcaaaac tgcaatgcaa ttcagctccc ccattacttt aaagatagga ttctgttcga
      181 ataataagct cccagctagc attatgatgc actgaatagc ttttaaaaga atttagaaaa
      241 tatgtacaag gatgaaaagg tcacttgcat aaaagagggt atgcacaagg tgaaagccta
      301 atgaaacatt atgcggtatc ttttttggta ctcagaattg ctccaaggtt aagagagtcc
      361 gagtcagtct tctgcagatc catttcctct ctccaggctt ctcatgttaa cccagtgatt
      421 tagtactctg cattaagagc aattcacctg cctctggtgt ccctgtggcc catccctctg
      481 gggagcgagg tggagaataa aaagttccac atatggtaaa gtcaagctgc ttggagcctg
      541 ctgagtgtct gctgtgggga tagcggctcc tgaaagcccc agctggtact tggaagagat
      601 tctgcattac tacacctcag tgcctgcttg gttcccttcg gaaactgttg gctccacata
      661 cgacagccat tttagatctc ttcaaccctt ttctcccggt tctgtatcca actgaacagt
      721 tggtcctct
//
LOCUS       KCOD01003565             559 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 396429pyr ultra-conserved element
            locus uce-4377, sequence.
ACCESSION   KCOD01003565
VERSION     KCOD01003565.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 559)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 559)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..559
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="396429pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>559
                     /note="ultra-conserved element locus uce-4377"
BASE COUNT          163 a          103 c          113 g          180 t
ORIGIN      
        1 ttttactgtc aaataaatac cttttaagta taaggatttc tttctcccca ccatcaccac
       61 ttcatttttc ttttgcttaa atccttcctc tccagaaata acacaaatca agcctatggg
      121 gcctgtttat ataatgggga tttatgtcat ttcaagacaa atggcatttg ctaagtttca
      181 gggaagcacc tgtattaatt gtatttcctg cttttgtttg caataaaaga attcatctca
      241 ggtgagttaa ccttgctttt agagagggca cctgcagtta tcttagtgct tattgtaaat
      301 gaaaacatgt tgagccttta aagcagtgaa ataaagaggt gctgacaaga gggtatgcca
      361 ataggattag aagcttttct cgccacttgt attatcagga tggagaattg agtcacgtta
      421 aattacaggg agaagagata ttcccagaag ttccacagat cggagattga cttgctcctt
      481 tggtaaacct atggatagga ggggcatcct gtgcttggtg agattagaaa aagacacctc
      541 ccttttagcc ttaggcatc
//
LOCUS       KCOD01003566             698 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 396539pyr ultra-conserved element
            locus uce-3586, sequence.
ACCESSION   KCOD01003566
VERSION     KCOD01003566.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 698)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 698)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..698
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="396539pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>698
                     /note="ultra-conserved element locus uce-3586"
BASE COUNT          178 a          166 c          150 g          204 t
ORIGIN      
        1 aaggagttat taaatgccaa gcggatatgc aataaatccc attgatttta caaactccag
       61 cttgtcttca gtctctttcc gttctttatc ctgggggcat tgcaacaaaa ccctatttta
      121 aatacctttt ctttgccttc ctccccccct cctctcactc ccaaaaaagt gtcaatattt
      181 tatttggatt tttaacttcg ctccataaca gttgtttgac ctcctgactc atgtgagtca
      241 cataaattct gggactttat tcaggagcca tgttccttct attgaataag caatttggga
      301 gggtgaatta atgacttgtg ctgttgctgg aaagtccctg aagaaatatt aaaattgctt
      361 gcagactgaa tcaatactca ctgaacaccc ggcatgagga cctgggcttt ttaatggcta
      421 caagcagcgg cactgggtag aggaagggga attcctgtac acacaacgca cgcaggcaca
      481 cacagccaac agcagccagc cttgctggct gtttcaacag catattcttg tgcacgcaac
      541 ctgctatgag ctgatgcctg tcgtgccagg gaaaggactt ccccatctcc ctcccaagaa
      601 gatcatgcag gatttgctgg ctgtttgggc ttgttaagcg cttggtttag catggtctgg
      661 cacaatctgc aaggcatgag gaaggctgat tatttgtg
//
LOCUS       KCOD01003567             626 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 396648pyr ultra-conserved element
            locus uce-4042, sequence.
ACCESSION   KCOD01003567
VERSION     KCOD01003567.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 626)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 626)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..626
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="396648pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>626
                     /note="ultra-conserved element locus uce-4042"
BASE COUNT          196 a          105 c          118 g          207 t
ORIGIN      
        1 ttgttatgtt aatttaaaaa tttaacaggt ttattaatcc tgcagaattt attatagtca
       61 aacatgagat attattaagt tgctattgta cggagcattt accttcgctg ttggaatgac
      121 ttgtcctctg cattggcaga cacagaaaca ttcattttgt ttcctaatta ggagagctgc
      181 aatcaggaac catgacaggg ttcagctcct tggtgtacag catgccaggt tccatagtgc
      241 aggctttata aaattctctt taattcaaga acagaatatc attaactttg taagtggatg
      301 aatacaatgg acaagcaatt taattaactt ctaacattgg atgttggaca ggagacaaaa
      361 tgaaattatg cacatatttc ttatgcaggc agtcaacctt gaaaggagct tgattgtgat
      421 gggtcagaca aggggacagc tttttccaat tatttgatgt ttagtcctag catatgaaat
      481 ttgaaatttg gtactttgta aatcaatcat ctcttatttt gaggcagcta caaaggttct
      541 ctgagataca aaacaaccac cagtgactgt gacatgctaa atacaacctt ttaccacatg
      601 gtactttcct atttgtagat gacctg
//
LOCUS       KCOD01003568             274 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 396751pyr ultra-conserved element
            locus uce-1134, sequence.
ACCESSION   KCOD01003568
VERSION     KCOD01003568.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 274)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 274)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..274
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="396751pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>274
                     /note="ultra-conserved element locus uce-1134"
BASE COUNT           90 a           44 c           33 g          107 t
ORIGIN      
        1 aaaaaaaaaa ataccttgca tacgcctttt ctatcaagtg ctttaaaata tagaataaat
       61 acacacatcc tgccagtttt ttcttacagt gagagtatcc ttacctgcca tttaatatta
      121 gcctcgtatt tttctcacgt atatttacct gtgacttgta tttgttattt aaaacaggta
      181 aaaaaagaaa attaactgta gcgcttcatt atactatatt attattatta ttattgtgac
      241 attttggaat actgtgaagt tttatctctt gcat
//
LOCUS       KCOD01003569             610 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 396863pyr ultra-conserved element
            locus uce-4925, sequence.
ACCESSION   KCOD01003569
VERSION     KCOD01003569.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 610)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 610)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..610
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="396863pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>610
                     /note="ultra-conserved element locus uce-4925"
BASE COUNT          193 a          115 c          114 g          188 t
ORIGIN      
        1 aatcacaatc aaccagggag aggaattatc tgctgaacag ctttgaagca aagttttccc
       61 agcaggcttt ttctgtattg aagtttcaat gtaaatgcat caccatagct gaaatgctta
      121 aagatgattt acttaaaaag agagagagga gctgataaga aaatatatcc ccaattacca
      181 cccctcctct tcccgatttg taactgctcc taataaactt tcatggtcta tgtaaaatgc
      241 tttagtgcag tgacaaattt ctgctggaat ttgagatgtc ttgttcagag taatagctat
      301 ctcacacagg tgcccagctg ctattgtaaa atcagtaagc atttaattga aacaaatgac
      361 tataataata gtacattatc cctgcaggct catagccata acagttttaa ttattgagtt
      421 aagagtcaaa ctaatttatc ctttaaagta acagccacat ctttggttcc actgatcatc
      481 ctattacgaa cacgagggga acagttggaa aggattttaa aaggaagtaa tttattttgg
      541 tagaggtgca tttatcatac tgcagaggat ttctctgcgt gctgacgttc ccagctgtgg
      601 ttgtcacctc
//
LOCUS       KCOD01003570             386 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 396970pyr ultra-conserved element
            locus uce-1744, sequence.
ACCESSION   KCOD01003570
VERSION     KCOD01003570.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 386)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 386)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..386
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="396970pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>386
                     /note="ultra-conserved element locus uce-1744"
BASE COUNT          124 a           87 c           55 g          120 t
ORIGIN      
        1 acttaatttt ctgcacttcc cctttttcct gtagcaatcc cttcctggaa ctaccacact
       61 actgatgcac accagttgaa aacagaggta aagaagtttt ctttgtcaac agcctgacaa
      121 aattgaacct gttcttttat ctgcctatgt tcatttagcc caccaagcag tctttattaa
      181 agctgaggca tcaggcagtc aaagttcatt aataccattt atataatctc tgcagtttca
      241 attaactcag caagacattc tactacatga taacagtctc attaattcaa taaaatccca
      301 taactattaa caatatggtc tatgttaaac ggggtgtcac ctagtagaaa ataatagctt
      361 taacagcttg tgatgaaacg cagcac
//
LOCUS       KCOD01003571             397 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 397079pyr ultra-conserved element
            locus uce-5032, sequence.
ACCESSION   KCOD01003571
VERSION     KCOD01003571.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 397)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 397)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..397
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="397079pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>397
                     /note="ultra-conserved element locus uce-5032"
BASE COUNT          124 a           75 c           70 g          128 t
ORIGIN      
        1 tatgactcat gaagttgcaa gggggaaatc catttccagc ttcttctagt tatgttcaat
       61 cctttcagtc tctatctgaa atgaaaaaaa ccaataacac acttcgaatt gtgttttgat
      121 aacctttcta caagtactgt tctagacatc cttcagcact tgcctgggtg cattatctgt
      181 aattgtcttt taatagactg agactaaatt attagaaaag aattgcatca ccagggagta
      241 agggttgtca gataccagtg agatgtaata catcaaatgc tgttgtgtac agccttatct
      301 catatgctgt ttgttgaccc ttgtaaccta ttctagttca gaacaggtaa aataatgaat
      361 gcaaacctgc atgcagctcc atagaattaa tgaatca
//
LOCUS       KCOD01003572             617 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 397184pyr ultra-conserved element
            locus uce-3924, sequence.
ACCESSION   KCOD01003572
VERSION     KCOD01003572.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 617)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 617)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="397184pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>617
                     /note="ultra-conserved element locus uce-3924"
BASE COUNT          187 a          129 c          111 g          190 t
ORIGIN      
        1 aatatttaat cctgattgat gactgaaagc tttggagcac gtatttagat caaaaggtgc
       61 tatataaata aagacattac aatgtcccat atgtacaacc atcttccctt agtatcatgt
      121 aaaaattgac ctgtgttagt ttccaagagc tttgcacaag gtggctcatg tcaaaaatgc
      181 agcaaagact caggttgttc agctttaatt tctggagcaa aacttcagca aacagtaaaa
      241 cacttttgtg gagctgtgaa agttcagcct agctgtttga taaatgagca gacaggcaag
      301 cagcccttct ttcttttttt gtatggattc aatgaagcct gcctaaagaa caccacatgc
      361 tgttccagct actgatctaa cattccgcaa catctcagcc ttccaaattc cctttaatta
      421 cacattaatc ccacccctct ctctttcatt ttctgcagac agggttgggg gctccacaag
      481 gctgtgggaa aaaaagcagt gttgaagaac tactttctga ggatggtttt cattcagaaa
      541 atatcatatc tgcttttaca gcagttgatt aatattagtt ggaacagcat caaaccatat
      601 tactttcttt ccagtgg
//
LOCUS       KCOD01003573             491 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 397291pyr ultra-conserved element
            locus uce-1025, sequence.
ACCESSION   KCOD01003573
VERSION     KCOD01003573.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 491)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 491)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="397291pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>491
                     /note="ultra-conserved element locus uce-1025"
BASE COUNT          155 a           92 c           86 g          158 t
ORIGIN      
        1 tgttacagta attgctgtct gagcctcaaa ggctaaaaat cgtttttcat ctcatgcatg
       61 aagaatttta gtctgattga tgacagctat ggaacctttc cttagtcact aagctgcact
      121 aatttgcaag ctaaaacaat attagcaaat tgttaatgat ccatgaaact gcagcagcag
      181 ccttaaatgt tatgctcaga actttcttac aactaaagca gcttacctaa attcccacaa
      241 tgggcacaaa atgagatggc atttacaaaa taattgtgaa agtgacaggc ttggctaatt
      301 acattagtgt gaataatttg tattgagggc atgtgaacaa ttaacattaa aacccagacc
      361 tagtttgtag ccgtttggat ttaattttca cattgagcta aagcacacac ttcctgtctg
      421 cacttaatgg ctgcaatttt cctctatttc tatcactgtg tggctggctt ttaaaatgaa
      481 ctggaaatct t
//
LOCUS       KCOD01003574             487 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 397395pyr ultra-conserved element
            locus uce-1100, sequence.
ACCESSION   KCOD01003574
VERSION     KCOD01003574.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 487)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 487)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..487
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="397395pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>487
                     /note="ultra-conserved element locus uce-1100"
BASE COUNT          155 a           83 c          110 g          139 t
ORIGIN      
        1 agatggtggc aaggttagag acaagttgtt ttctcaaggc tgagattaac taaacattcg
       61 tgtgtgtgtc tgaaaaggac cccaatgaaa ggaaggaatg agagatgcta aacaatgctg
      121 tgcaaagttg cagactgttc ggctacaggc cagaaaatga atccaatttt tcattctgtc
      181 attataaata tttcagtgca aatggtactg attttctgca actgtggtta agcaaagggc
      241 ctccgagtga atatttaagg gggaaaaaga gggaaattaa ggttagcgac caattaattt
      301 caaactttca gtgtaaaaat tctacagtga tgcagtgtgt gactcgaagg agaaaaaaac
      361 atttactctg ctcttcttct gacagtttct cataaaatat ctgcagtcca tctatctttt
      421 agtactccag gctcctctgg agagcagaaa atagtagttt aaagctcact tcagtgccag
      481 tctgcgg
//
LOCUS       KCOD01003575             756 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 397502pyr ultra-conserved element
            locus uce-2131, sequence.
ACCESSION   KCOD01003575
VERSION     KCOD01003575.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 756)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 756)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..756
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="397502pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>756
                     /note="ultra-conserved element locus uce-2131"
BASE COUNT          269 a          119 c          132 g          236 t
ORIGIN      
        1 tgattgagaa aactcagaac aagtgaaata ggtgaaccaa catttcccgt cttccagaac
       61 taatgttctg tgtgtatata aaaaaccttg caaaaatata tccaaataat catgtcaaat
      121 gtaatttctc attagcctta tataggtaaa aatgtttagc aacactaaac aatacggtat
      181 tcaaaatata gaacatctag tttagtgcag attaattttt aacaagaatt cctatgcagt
      241 aggcagatag ttcccacatt ccattgtgat tgacaaccct gacatatgga atagttcaca
      301 aattcccagg tgactgacag atggagaata gaaaggcgga taaagttgcc tagagagctg
      361 aggacgattt catattcagc ggttttgatc aaaaggattc cagatctcac actaaattta
      421 gcaccgctgg caattagtgc atgatttatt cagtcctttc atttgctggt tgacaaatga
      481 aaaacaagca caaaattaaa aataagttta tttccagcat ttcggatatt taaaatgtgt
      541 gtgtctttgt ttgcacataa attaacatga gatgaattta tagtgagatt aaatctgaaa
      601 tggagatgca agcaataaat aagagctttt ttatgtatct ttcaggcaga acaggtgttt
      661 gaattaagaa atactaatat gtttagcagc atgactccac ctttagcatt agggagttga
      721 tgtttcccta aatttagaat aatctttcca caattt
//
LOCUS       KCOD01003576             455 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 397608pyr ultra-conserved element
            locus uce-6808, sequence.
ACCESSION   KCOD01003576
VERSION     KCOD01003576.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 455)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 455)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..455
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="397608pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>455
                     /note="ultra-conserved element locus uce-6808"
BASE COUNT          143 a           65 c           82 g          165 t
ORIGIN      
        1 aaagaaatct tcctgtaaat atatatattc tgaatccatg tatacaaaca ttcctttaga
       61 gttcagattg tgaagagtgt ctttattggc tagagaccgc tgcctcccgt ggcaggggtt
      121 acatgtgcta tagtaaagaa cacagtgtgt gaagtatttg atgtactgca gtaccatagt
      181 tattttggtc tgttaagtaa gttgcaattt gtgatgaaat gaagttgaaa gtagtgcttc
      241 atactaacaa atttccttgg ttacaacttg atttttcttg taaaacttaa aagggaaact
      301 tgaaaatttt atatatttgg attttgtaga ttttttttat tttattgcaa cacaaggtac
      361 caaaatcatt aaataaagta cactgtggtc attttaccct gtctcttgag tcctttttaa
      421 aactctttat cctaggagat cagaaaaaga atgct
//
LOCUS       KCOD01003577             426 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 397713pyr ultra-conserved element
            locus uce-7843, sequence.
ACCESSION   KCOD01003577
VERSION     KCOD01003577.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 426)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 426)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..426
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="397713pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>426
                     /note="ultra-conserved element locus uce-7843"
BASE COUNT          125 a           80 c           90 g          131 t
ORIGIN      
        1 tgaaattcaa gcactctgtt tgctttgtgt ttttcttttt agcatttatt tattttattt
       61 ccagagctgg aaaatactac tttgatgaat ctgttcctca ccctaaagct gtctgtctgt
      121 tattcatcag aaagcaggtc gcagttcagt gagcagaaga aaagatttta atagaagctg
      181 tgccaagggc tgtaatgcat cattttaggg ccctaattac actacaatga caaatatcaa
      241 tggtgacaac agcaataacc tgcatccttt aatggctatg ctggaagagg agtttgggca
      301 ctgtgccatc agattagact tggtttcaaa acataggcca ttagaagtgt gcacagcatt
      361 attggctgat aactgaagcc cagtggaagg gcctgtaaat aaatgaagcc tctctaaagc
      421 ctggtc
//
LOCUS       KCOD01003578             566 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 397822pyr ultra-conserved element
            locus uce-7632, sequence.
ACCESSION   KCOD01003578
VERSION     KCOD01003578.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 566)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 566)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..566
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="397822pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>566
                     /note="ultra-conserved element locus uce-7632"
BASE COUNT          161 a          115 c          111 g          179 t
ORIGIN      
        1 acaaggctta ttaatatcca ggcctgcaga agacaactgt cagacaattg gtcaacaagg
       61 tacatggtat ctgttagata ctgactaacc cattatgatc tttatgaagt gtccttttgg
      121 gggtctagat cttcaaatat gagttggaag acccttttct tttattagtt gctaagctct
      181 ttatactttt accatattgc ggcaggttag aagtctgagc tttattgtct tatgttattg
      241 aaaatccaga ttcccgcagc cttctccctc aggtcaagat ttgtctgaga atacattctc
      301 atttctccat gtacaaaggc tgtctggaga gaggcagaaa aagattatga ctgtaatata
      361 cttaaatcca atttatttgc ctgactagaa acttccacac ttcacaattg cttcctacag
      421 aagattttgt atttaattcc ttcatcgcag cgaggagcgg gagcgatctg agtcctccaa
      481 caggtctctc acacacctga gccagaggag agggatgaaa gcagcaaata ttttgcactg
      541 ctgcatttat ttctgcttaa ggataa
//
LOCUS       KCOD01003579             340 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 397930pyr ultra-conserved element
            locus uce-5751, sequence.
ACCESSION   KCOD01003579
VERSION     KCOD01003579.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 340)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 340)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..340
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="397930pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>340
                     /note="ultra-conserved element locus uce-5751"
BASE COUNT          123 a           68 c           53 g           96 t
ORIGIN      
        1 ccaaacaatt acaatttcca cttctaacac aagagaacca aggcctctat ttgctaacca
       61 tgtttcctct actctttgaa atccaaggaa agattagagt tgcagcaatt aaaaattatc
      121 cattaattag agctggaagc aagcacccat gaaatacagg tgataaccat aaatcagaac
      181 aattagtctg tctaaaaaag caacatgatc aaatcagaaa ctctctacca cctgctcatt
      241 taatcttagg ttgcagtctg ttatgaggag acaaatctgt atgggatgac gtgaaatttt
      301 acagctatgc atccttcaag gttattcttt gaaagaaatt
//
LOCUS       KCOD01003580             560 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 398035pyr ultra-conserved element
            locus uce-6602, sequence.
ACCESSION   KCOD01003580
VERSION     KCOD01003580.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 560)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 560)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..560
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="398035pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>560
                     /note="ultra-conserved element locus uce-6602"
BASE COUNT          167 a           99 c          118 g          176 t
ORIGIN      
        1 ggtggatgct gaccgaggaa gggctcattt ctaagtggaa ggaaggcacc cagaattaat
       61 tgttgcattt ttgtcacatg cttataggag atacaataac tgggtactta cccttcagca
      121 gaatgtttgc gagactaaac tgcaaatgtg tttattgctg agatgaggct tacatttgaa
      181 accagttcct gaatttgcag cttctttcat gcagccagta tcagtccaag tgtggtggag
      241 ttgagtctag tgaaggcccc ttcctgtcat aaataagatt actttcattt cacttgtgga
      301 gtgtgttatt cctcagagta atgaatttcc tctgtgcctt tgagcacata aacatggttt
      361 tcattaggtt tctattgact attaactcca taaatgcaga tctattttcc cgtgttggaa
      421 gtaaacagct tcttcgctga agactgcaaa ttgaagaaaa ttctgcaaac ctgaattctg
      481 ctatgagaga aaaaaagtac tggaaaaact agtttcttaa aaatagacta aatgtagaca
      541 gacaaatagc ttcaggcttt
//
LOCUS       KCOD01003581             620 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 398144pyr ultra-conserved element
            locus uce-6584, sequence.
ACCESSION   KCOD01003581
VERSION     KCOD01003581.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 620)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 620)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..620
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="398144pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>620
                     /note="ultra-conserved element locus uce-6584"
BASE COUNT          192 a          106 c          108 g          214 t
ORIGIN      
        1 aaaatctctc aatagatctt ttagatgctt ttgggcaaac taagctcaat ttgtcaataa
       61 aaaccaaaaa ttaactagat ttgctgctaa tttattgaaa gagagagatc tattcttcct
      121 ttttaacaaa ctttgaccac actcggtctg gggagctcca tacaaaagat atacaggact
      181 ggaaaaaaat aactgattaa attttaacca gctgctgggc agatagtttg cctgaggcac
      241 ttttgtcagt ttcaaagggt ccttttatta attttgcatt ttgtattttg ttagtggaaa
      301 gagctggctc tattgggact gccaaaagct ataggcagcg aatcttacag cagcaaagag
      361 gaagctgtag agcatgccaa gtagatttag cacactgagc actctaaatt acatttgttt
      421 tatcagttct aaaaatatat taacttcagg tgtaagttct ttgaataaag ccttaaagct
      481 agtacattca gttcctcttc tgtttatata aggcttttac tttgtctata aaaataaacc
      541 actgtagtct ttgccagata actacccatg taatttaaat ctttccttcc tatgattgtt
      601 ggtgtttctt tgttgatctg
//
LOCUS       KCOD01003582             649 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 398255pyr ultra-conserved element
            locus uce-6127, sequence.
ACCESSION   KCOD01003582
VERSION     KCOD01003582.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 649)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 649)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..649
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="398255pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>649
                     /note="ultra-conserved element locus uce-6127"
BASE COUNT          194 a          143 c          122 g          190 t
ORIGIN      
        1 aggaggctta ttaggatcaa ggcatgacat caggaactat gctgctggat ttatcaagac
       61 cagtttattg caaaacaaag cccaataaat tttgtttagg gccagctttt gaagaaaatg
      121 acacaggtct ctcggctaaa gggagatttc catttcttgg cacagtaaca aatcctcaag
      181 cagagtaggg gtgagatttt cctctgtaag taacttaatg aatgaagtac taattaacat
      241 tatggcattg ataaatggag agagagatta gggatgtact cgatattcag gccttcccag
      301 atggaccgtc aaagccacat taattcctat ctcattggag catctgcttc tcccataatc
      361 cattgcccct tggtacaaac aacacaaact gttgtgactc aattcgattt atatcaatct
      421 aatttctttt aatccaattt gtattccaat ctactacctt ctaatcactt aaatcttcag
      481 cctccatctg gtaaattttc tctcaaaatt aaccgagcag atgcctctgc aattgtcttc
      541 cacagtcagg ctaatcatgc cctggcagtg gcctacagag ctcgctgaat aggtacgtga
      601 cttacagcat tgcccttctt attacaagca tggcgatgca ggaaggcca
//
LOCUS       KCOD01003583             659 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 398368pyr ultra-conserved element
            locus uce-5135, sequence.
ACCESSION   KCOD01003583
VERSION     KCOD01003583.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 659)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 659)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..659
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="398368pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>659
                     /note="ultra-conserved element locus uce-5135"
BASE COUNT          209 a          114 c          131 g          205 t
ORIGIN      
        1 aatagcaatt agagttcaac agatttcatc cataggtgcc acatttgcat agtgtacggt
       61 gagtgcattt aatacagtca ctcctcagtg aaaacagcag tggtggtggc agtattaaag
      121 tggttagtgc ggatgcctct gcccaggcca ccacgtagca accactatgt ttctaaggac
      181 aaatagctct tgcctgccct aagcaactcg gtgagaacat caaaacatgc cttgtcccat
      241 tagtggtagg aactgttacc tcaatcttga atgacacagc cctaattatt aaggtaatta
      301 gaagttataa cactggcaat attaaaggca gaacttctaa agcccattaa caatgttact
      361 ttaagtgatc tggctgtgaa ctattcaaat ctctaattac gttatatgtc tgtcttaaag
      421 ggtgatgtaa ttaagtgatg ggagagggaa tgaatgtata gtgactacta tactatattt
      481 tgtaagtact attttcacag aaaccagcct cagtaatgtc agtatgtcat ttaggggtag
      541 ggttttttgt tcaactctac accacatata gctaaaaaat actttaaaat tatatatcgt
      601 ggtttagtat agtgatatta tcaaaatgaa gttggattgg atacattatt catgcttga
//
LOCUS       KCOD01003584             465 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 398475pyr ultra-conserved element
            locus uce-683, sequence.
ACCESSION   KCOD01003584
VERSION     KCOD01003584.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 465)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 465)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..465
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="398475pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>465
                     /note="ultra-conserved element locus uce-683"
BASE COUNT          132 a          119 c           65 g          149 t
ORIGIN      
        1 cagctagaag tatttgccat tctttccaac tcagcctaac accaccataa ttttgacttt
       61 gaggatgtat atttgtatat atttttcttt aaaactgatt tttctcatat gaaaagcatc
      121 tctgagccat ccacagcttt cacaaaaagc tgcttttaaa gctgtctagc tctcttccac
      181 ctgatcctat aaacactgct ggcaattttc cccccatgcc tctaacatat tttcacttag
      241 caccagtttg atgtataaga tctgacagcc aggcagttat aggccacctg catcactgtc
      301 gccatgacaa cagtgaaaga caatccatga tcccatgccc tggtcacacg tttcaataca
      361 gcttatctgt ccaaagccac tgagtctaat ggaaaagagt aattacaatc ttccactcaa
      421 attctcacca taaatgctct tcttatttta ttcatggctg ctttg
//
LOCUS       KCOD01003585             482 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 398583pyr ultra-conserved element
            locus uce-4293, sequence.
ACCESSION   KCOD01003585
VERSION     KCOD01003585.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 482)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 482)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..482
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="398583pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>482
                     /note="ultra-conserved element locus uce-4293"
BASE COUNT          153 a           96 c          115 g          118 t
ORIGIN      
        1 ttttcgagtg gcaaagtagc cccacttgtc aatcagctac ctcgcagctc taatggattc
       61 tccccgaatt taatttaaca tcttacaata cgcccacatg gccagaaaat gtggccagct
      121 tgatagggtt cactgagcca aaggagtggg accaaaacag ggcattaatg tataggggaa
      181 gaatggctgc aatcagttcc cttgtgaatt ggacagagaa cttggagctg aggcaattat
      241 cagccatcgg ggattaatag ggaagtgtga atgccaagct gtatatgtta ggggcagaat
      301 atgttgccta tagaaaacaa caaagagcgt ttcttactat taagtgagat taaacgtaat
      361 ggcctgattt aatcacaaag gcagaattaa attcagatgg caacttcaaa gtggacacat
      421 gcacagagcc cactgcatac atttacatat agctggcata gcttggctcg cagcacaatg
      481 gg
//
LOCUS       KCOD01003586             913 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 398694pyr ultra-conserved element
            locus uce-191, sequence.
ACCESSION   KCOD01003586
VERSION     KCOD01003586.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 913)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 913)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..913
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="398694pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>913
                     /note="ultra-conserved element locus uce-191"
BASE COUNT          286 a          166 c          206 g          255 t
ORIGIN      
        1 aggctcatag gtagcaatcc tgagagggca cacctgagac ttgctcagta cagagccgct
       61 agatgttccc tcaactctct gctcttcagc ctggtccagg gccttcctgg ttgtgttgac
      121 aggctgtata aagaaccctt gaggcacagg ggctgcagag gtaatgaagt gccttgaggt
      181 taactatcaa gggacggatc cactccctgc cacaaaccag gggtcacgtg gctgtggaat
      241 gtgtatccaa agatagtgct accttcagag aactctactt acaggtaagt aactcttctt
      301 taaaggaggt atctttgtgt ggcagactgt ttatgggagc aatttgaatt gaactttaaa
      361 tgaaaaaggc atatctctgt aagtggtaat aattttagtc atctcgctgt ggctaggggt
      421 tgtggaattc attagcacag attaacatat aaagtgggtg agatatctaa tagcaaacgt
      481 agaggtttag ggaccttaat tcatcactga atgaacagcg tgtacagtat tagggactat
      541 gaaattttta atttacacaa agtgtccaag aatataggga ataaatttaa acccaaaaca
      601 gataatggag ctgtgccctg cctagctggc aagttgaatt gtttttacac tgagtgaaga
      661 aagctaatta tcccaagcac aaggagactg ctaaaaataa taagattata aagaataatt
      721 tgctgatata attacaacaa aattgggtac acacaatcgt cagatacatg tattgcttga
      781 cctgggcgag aaagtgaaat aaatccttcc tctatagcct tcgtaaattt gtttttatca
      841 tctccaagtg ctgtttgcac aggcagcaca atttgcatgt gtaatgtggc tgtacaaatt
      901 gacaacaagt aaa
//
LOCUS       KCOD01003587             623 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 398805pyr ultra-conserved element
            locus uce-7849, sequence.
ACCESSION   KCOD01003587
VERSION     KCOD01003587.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 623)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 623)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="398805pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>623
                     /note="ultra-conserved element locus uce-7849"
BASE COUNT          214 a          127 c          112 g          170 t
ORIGIN      
        1 tgtcaataaa tatcatgaga cattttttaa atatttgaaa ggttaaggaa atgtaaaaat
       61 atgaatggaa atgagaaatc catctacttt cctacaagaa aacatgcaac aaacttcagt
      121 aacttcactt aatcacaaaa tctagtcatg aacaggctgc tactataagg taagacaggt
      181 tgcaaacagt cctttatgta aaagcaaatg tcaaaagaaa agctctgata tttggttgtg
      241 ggctcccact tttcacatag gcatttccta aatccatgtt tgatgagctt ctccagctat
      301 aaattctgta aattccctct ggagcagtgc agagtgtgct tcatgaaaat gtcatctgcc
      361 agcactgcaa ttactcacac tccagcaatc atgtgcacaa tgcagaatgg gtcgaattca
      421 ggtgagaacg agaaccagca atcaagcctc tggaattgag aacaaagcca ttttctttca
      481 tttgccatca acacaaccat caaggcctta attacaaggc aagtgtcaag cctggctgct
      541 gaaaggctta ttattataca gctcagcttc aaatcagttt tgtattgatg aactgcaaaa
      601 atgaggaagc cagcttagcc cca
//
LOCUS       KCOD01003588             305 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 398906pyr ultra-conserved element
            locus uce-4901, sequence.
ACCESSION   KCOD01003588
VERSION     KCOD01003588.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 305)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 305)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="398906pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>305
                     /note="ultra-conserved element locus uce-4901"
BASE COUNT          100 a           51 c           59 g           95 t
ORIGIN      
        1 ttgtgtattt atactgtatg tatgatttgc atgtttcaaa gataaaggga ttaaaaacag
       61 tatactgaca actgtttaca agaaagtgga gaaaaatgta catacatttt tgtatgttta
      121 gatataccat aaatactcag gattggagct gcttgtaagt ataacaaaat actcatgact
      181 ttatcttgcc agagtccatc agttacccaa accaagatgg cactttgtct tgtttatctt
      241 taaactgtag gccttatcgg aagccgctta aaagggacac ttcactggag gaggcatcca
      301 ggacc
//
LOCUS       KCOD01003589             549 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 399012pyr ultra-conserved element
            locus uce-1765, sequence.
ACCESSION   KCOD01003589
VERSION     KCOD01003589.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 549)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 549)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..549
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="399012pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>549
                     /note="ultra-conserved element locus uce-1765"
BASE COUNT          208 a          101 c           79 g          161 t
ORIGIN      
        1 gctataaaaa tgaaaacatt taaatttctt taaaattaca tttgacttaa ttacagccaa
       61 tccctaatac cagcaaacaa cccattttgc ctacttttca gcataaatag ccaccagcct
      121 catcatttca taaagagttg ttttcctaca tgatgttctc tatgtgcaga atgttaatag
      181 ctactatagc tgaatatgaa taggctttgt agctccactt gaaatataga aaaatggccc
      241 agacattaaa aaagataaaa gggaaaaggg cagtaatgaa tttagaggaa aatgaacatt
      301 aatggtacta gcattacctc atgttccaca taacaaatta ttggaaatct gtcaagcaca
      361 ccaaattatc tactcatctg ctattgtggg gccctttgga gccatccaaa accagcaaaa
      421 gcaagacaat ttaagctaat tttactattt ataacaatag aacagaccat taagataaat
      481 taatgtcatt atcaagtttc tatgaaaatg acaaataccg ctatttcaag cagctttaga
      541 agctgttga
//
LOCUS       KCOD01003590             699 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 399125pyr ultra-conserved element
            locus uce-1963, sequence.
ACCESSION   KCOD01003590
VERSION     KCOD01003590.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 699)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 699)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="399125pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>699
                     /note="ultra-conserved element locus uce-1963"
BASE COUNT          207 a          124 c          123 g          245 t
ORIGIN      
        1 attatacccc tctgttcata ataatgagct gttttgtgca aagcagctca ttattatgaa
       61 tgtaagggca tgtttggact agtaaagcaa atcataaaaa ttgctgccca tgtcacgttt
      121 tttctttgtc aataaaagat tttcctcagg gtcagaaaca attattgacc agaaaaaatc
      181 tcaagttcta cttggaaatt ttacctgatg atggtgaaca ctatctgcaa ggtcttttgt
      241 gttaaggaaa gcacgacatc tgccaatctt tcaaattcca aagggtaaag aatgaggtct
      301 gttaggctgt catcgaacat gacaggctta atgtaaagtt tataacagaa aaagggcaat
      361 cttattgtgg tttattcagt tttatgttgc ttgttcagta gaaaagctca ttttttatct
      421 aatttatagc atttgaaata ccaaacagat tttttacata tctcctgagc tcgcagctct
      481 tcttggctac cccttagtca ttcctttagg gagcagtctt aaatcctgcc aatttagcat
      541 ctatgtgaga ccagacaatt gttttacttg agcatatcct tcagttgtta tagagctgtt
      601 tctaactcca aacattttag tttaattact gcttagaata tttgctatat ttttatctag
      661 gttgcctctc acttgagccc attgggctga agaaagaat
//
LOCUS       KCOD01003591             418 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 399235pyr ultra-conserved element
            locus uce-6702, sequence.
ACCESSION   KCOD01003591
VERSION     KCOD01003591.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 418)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 418)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..418
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="399235pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>418
                     /note="ultra-conserved element locus uce-6702"
BASE COUNT          137 a           78 c           75 g          128 t
ORIGIN      
        1 ttaggcagga gagacaggaa agcatgtgat tgcatgttta acaagtcttc aaactttgtt
       61 ttgaatttca ccaaaagcat tgaagtaggc ctattgtttg aattactctc ctccattaag
      121 tacatgaatc tttacccctc caggctatgt tcatttgcat tttatctctg ccactcttcc
      181 acacttttat ttcactcttg accctgtttc taggagatgt gcgagtaaga agtcgggcag
      241 gatttgaaac agagagaaga ggttctcatc catacattga tttccgtatt tttcactgta
      301 agtatttaaa agcagataaa tgacaaataa acaaaggctt ccatcaattt taactactaa
      361 gcctctaaaa agttaggagc atagcaagac caatacttag gaaaaaaaaa tggaagag
//
LOCUS       KCOD01003592             221 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 399338pyr ultra-conserved element
            locus uce-144, sequence.
ACCESSION   KCOD01003592
VERSION     KCOD01003592.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 221)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 221)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..221
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="399338pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>221
                     /note="ultra-conserved element locus uce-144"
BASE COUNT           88 a           43 c           34 g           56 t
ORIGIN      
        1 tgcatgaaac aaaatggatt atgaatttga aaattgccaa ttatgttgca tcacacagct
       61 cagagcactg gcacaatgat gaaccccaat ccagattttt cagcttaaat ggctttacat
      121 tcaagcaagc aaattaacca taaaataaag ttttacaaaa tatcccaaga aagaataaac
      181 tgcagataat aagcaccaat ctggtgttga atgctgccca a
//
LOCUS       KCOD01003593             609 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 399444pyr ultra-conserved element
            locus uce-5085, sequence.
ACCESSION   KCOD01003593
VERSION     KCOD01003593.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 609)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 609)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..609
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="399444pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>609
                     /note="ultra-conserved element locus uce-5085"
BASE COUNT          159 a          120 c          125 g          205 t
ORIGIN      
        1 taggtagcat tatatcactt taaccttaaa aggttatatg aatttgtatc tgagtctttc
       61 ctaatttgtt tgtaggagtt cgcgtgctgt tttgataatg ttttcattga tgtcaagacc
      121 ttggtataaa aacaagacta gcactatact aatttaccct atggtctcct gtgtcttcct
      181 ttgcctctct ccttgagcaa ctggcatagc tgcaggactg tttactccac agcttatttc
      241 ccctttatct ttgatgtccc aggatgtcaa aggctgtgaa tttaatattg attttataaa
      301 gtacttttac tgtaacatgt cagttaggat tagcttcaac ctcgaggaag ctcaggcagt
      361 gagctggatt tgcacgcaat gtggctctcc agctctcaga ctcttttccc gagtgaatgc
      421 tttatttata agagtgacag tgtgctgtga aagcagggat agcacacagc ccccagctat
      481 ctctgtgtct tgtatacaca acgtcagtgc cctgtgtata cattaggctt gaaaatgtaa
      541 gtggatcaga gagacgtatc atttgctggt atgtaaacag acagatgagt ttatagatcg
      601 cattaaacc
//
LOCUS       KCOD01003594             498 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 399554pyr ultra-conserved element
            locus uce-6081, sequence.
ACCESSION   KCOD01003594
VERSION     KCOD01003594.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 498)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 498)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..498
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="399554pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>498
                     /note="ultra-conserved element locus uce-6081"
BASE COUNT          136 a          141 c          105 g          116 t
ORIGIN      
        1 atcgccttta tagtatttag cctcatttac attcctccct cccactcccc atcaccacag
       61 gtgatttccc catattcacc ttgcccttga aagaagcctg gggtcccatt tctccctccg
      121 cctcccatga gggaaagcag cctctgggga aaacgcctgg caaaaataac agagccaaag
      181 gattgtatga acagccatat tcccctgact tgtcaagctg gctaaaggat tgacagcttc
      241 ctctgggaat tagaaaaacc agatagccct ttgatgctgg ccaatccttt aattagcttc
      301 aggactggac tgtgttccac ttgagctcca ggatgcgtga tgaagaggca gggaaatctc
      361 ttgcctagac tccactgtcc catctcccct cacctaggaa cttctgtgag atacctctcc
      421 tcaatccagc agtgaaggcc aggaacaatg acaagaggcc gattaatgga ggagaaagca
      481 gaccagaaac aggcacta
//
LOCUS       KCOD01003595             696 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 399665pyr ultra-conserved element
            locus uce-3059, sequence.
ACCESSION   KCOD01003595
VERSION     KCOD01003595.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 696)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 696)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..696
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="399665pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>696
                     /note="ultra-conserved element locus uce-3059"
BASE COUNT          234 a          161 c          111 g          190 t
ORIGIN      
        1 ccagtttcca tgtgaagtta ttataatgac taataaatca ttataacagg tgatcactgc
       61 attacatttc tgatgtgatg ccacacaaaa caatgtattt aaaagtgaac ttgcctcttc
      121 ttttaacctc tattgctaaa cattaaaaag gtgcagctat catttcagtc accaccagaa
      181 actgcaagga agaccacata tgtagtgaac ataagagaca gaagtgacag aaattgataa
      241 aaacttcatc acatggctga caccccatat atcaaagccc taaatctcat tctctgcttg
      301 cctccaattt ccatcaaagc ctgccagctg cacatttatt gagaagtttg tgatctgaca
      361 gctactgtat taccaacatt aatgatgcat cagtctccag aattactggg gaaacagtcc
      421 aattgatttt attattatac agagttcctc acatttcatt tcaggcagct tcctaccaca
      481 aattttagca ataactaaaa atgctacaca gctgatgcac aaaatgctag ggcgaaagat
      541 ggttaccaca gcttcatgcc actccattct ccctccagga gagctccaaa tcactcagac
      601 accactgtgt aacccatgag ttattggtcc ataactaaaa gggcttgggt gataaacagt
      661 gcagcactaa tattcactgc agacagctac aaacag
//
LOCUS       KCOD01003596             793 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 399775pyr ultra-conserved element
            locus uce-5991, sequence.
ACCESSION   KCOD01003596
VERSION     KCOD01003596.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 793)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 793)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..793
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="399775pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>793
                     /note="ultra-conserved element locus uce-5991"
BASE COUNT          219 a          149 c          204 g          221 t
ORIGIN      
        1 tgcaaatggt ttttctgttg acttgtctgt cattctctga tgtctgcaga tatttgatca
       61 gctattctgt gcatggcatg gcccttctct ggcagctacg cgcatgggaa aaaaaaatgt
      121 tatcaataag ttcagaggag cctcagcaga ctcagagaaa tttcacacaa acataaaaca
      181 aaacctaacc cctgtgacgg ggaaagttta cactgcgcca gattttagca gctttcttgt
      241 gcctttggtg agatgtcaga agcgcaggtg attttaattt tcttgtacag agaggaatgg
      301 agaagtttgg aatttgcatg catgatcagg acctgtgttt gggaaaatgt aaactcatca
      361 cagtggaaaa tgtgttgttt ggagtctgag ggtgaaaaca aagctgagga ttttggagag
      421 actgcctgag ccagatggcc tggtgcattc ccagtctggc agcccaactg ctccctcctg
      481 tataatatac agccatttgt tctgggatat ttacgctaga gctgtttcca tgtgaatgtt
      541 tgaaaaccat taaaaatgaa catattagga gagataaatt tatttaattt gtgtgaatac
      601 atcgataagc aggctgtgaa tcaaaggcag agggagactg gataaaataa ttagatgctt
      661 ctgaattgtg cgttgagagg cagagcaaga actccctgtc ctcgccccgg gaccagctcc
      721 gcgctgcttg tccgggataa acgtccctgg gatgagtcga ggttttgcct ggggaagggg
      781 taaaacctcg ggt
//
LOCUS       KCOD01003597             497 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 399887pyr ultra-conserved element
            locus uce-6176, sequence.
ACCESSION   KCOD01003597
VERSION     KCOD01003597.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 497)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 497)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..497
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="399887pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>497
                     /note="ultra-conserved element locus uce-6176"
BASE COUNT          155 a           85 c          101 g          156 t
ORIGIN      
        1 gttcaggcaa gagagggtta attcaataaa ataaatataa aatactctcc aggctgttgg
       61 acagagctgg aaggggtcag aggttgctga gctgcttcac tagcacacta atcgatttgc
      121 tgtcaaggta gtggtgctgg ggtttcaagt aagagaagaa ttgagtgccg ctcgggccca
      181 atttccataa ttgctcactg cctttagtgt acaacctttt atgaaacaca aaaaatatat
      241 cactgaatgg tattgattag ccattggtct gaataattca cttagtattt attacctgac
      301 cctcagaggt taaataaatc cactatctaa ctttggcttg tgagaaatat tacttattca
      361 ttgaaatgtg gactgattat tacacaatgg gagtgtatct ttgttgttct gtttatctcc
      421 tcctggaaaa cttagtccct gtgagttaaa acaaatattt atggatagtg aagagcattt
      481 tccaaaataa acaccaa
//
LOCUS       KCOD01003598             851 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 399998pyr ultra-conserved element
            locus uce-223, sequence.
ACCESSION   KCOD01003598
VERSION     KCOD01003598.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 851)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 851)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..851
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="399998pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>851
                     /note="ultra-conserved element locus uce-223"
BASE COUNT          204 a          174 c          235 g          238 t
ORIGIN      
        1 ccaagaatga attgagcaaa agcacacgct ccctggaatg taaatatttc cagcacttac
       61 cgacatgctt ttagaacttc tgctgagctg gggtatatgg acaccgacat tgatggtatg
      121 atctgaggac taggtttgtg gctaattgga ggaggatctg ctttcatggg gctctgagag
      181 tcctccaacc cctctccatt aactgtatgt ccactgtgag ggctgttaag gctggtaaca
      241 ctgtttgtgg tagtctgttc agtagatttt ggagaaggtg ttgctgtgga aatggctgaa
      301 gatggtgagg aggcaacaga attctcagtc tttgtatgaa cagctggatg aatgttattg
      361 actttgtcac aggttccagt actcacattg ttattggctt ttcccatcaa caaggcagag
      421 agctgaggat tgtctgaact aagtaaacct ggtgacttag aatctccatg gctagggcta
      481 gaaacagcat ctgccgtcac ctgatggaca tgattaggaa gtccctctac actggcagtg
      541 ctgtttggtg tctctccaga atgcctgctt gtttcaggca ctgctgatgt gtttcctgaa
      601 ggcttgctct ctttggttaa ggtaatgcct tgttgtccac ctgaggtagc agtgtgagag
      661 gagaggtgat tgagagcagc cccctgtgtc actgaattgc taggcgtggc aggatgtcca
      721 ttctgattct gaataccagt gccagctgcc tggagatgct gggaaggccc agtggaagag
      781 agaggtcgtt caccattagg acctgccaaa tgtgaactct gacctttgtg aagcccctac
      841 gaaggaagga a
//
LOCUS       KCOD01003599             599 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 400106pyr ultra-conserved element
            locus uce-3973, sequence.
ACCESSION   KCOD01003599
VERSION     KCOD01003599.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 599)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 599)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..599
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="400106pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>599
                     /note="ultra-conserved element locus uce-3973"
BASE COUNT          184 a          104 c          135 g          176 t
ORIGIN      
        1 agaaaagttt ggaaatatca gctgccgttc ctctcccatt tccagctgct tgaggtctaa
       61 ggctggagga ggatgccctc ctctggctac atgcgttccc ttttcatcaa gcctcggagg
      121 ctgaggagaa atcactttga acactgaggc ggggagctgg aggcaattac ttgtgattga
      181 tagcactaaa tatgaaaccg catgtacctc atccatgaag catggaatca gcagcatatt
      241 gttagtgggg gagatgaatg gggcttgaga taaccttggc aaattaggca tatgttagca
      301 ttaagctttg tcagtaagca ggctataaat tacagacata ttgtaactcc ataaactcat
      361 ctaatgaatt gaatgacagt ggtaatttaa ggcagaatgg aactgtttaa cccttttaag
      421 aatttagctt tatttctata ttacgcaaca atccaaactg tactaaaagg ttggtatttc
      481 atatagggaa acaattcttc tgtgtttcat gtacatttta acaaacagtt ggcaacctgc
      541 aaattatttc acttgtaagt tggttaatag aatggaaaaa gaatggaata gctggggtg
//
LOCUS       KCOD01003600             410 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 400209pyr ultra-conserved element
            locus uce-7159, sequence.
ACCESSION   KCOD01003600
VERSION     KCOD01003600.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 410)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 410)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..410
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="400209pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>410
                     /note="ultra-conserved element locus uce-7159"
BASE COUNT          140 a           73 c           70 g          127 t
ORIGIN      
        1 acgcactgac tagagcttca ttgtaaaaag ttatttcagg atattggctt ctgtccaaaa
       61 ggtaagagta acggaggtaa tttaaatatg cttgagcaca ggaacaaatc cctaagctct
      121 gttgctctct ttgtcaaaac ccattctttc agaaaatcat tttctttact cattggacaa
      181 caaaatgcat tgtcaagaaa ttttatagca ataattataa aagatgtcca tttgaaccca
      241 ttgaggtctt actgatttta taatacccag cagacctccc tgcaggagaa cactatattt
      301 atgttagcaa tatatgcgag aattgagatc gtaaaattaa atgaccacat agaactgtca
      361 tttatatgat gagcacctac aaatgtgaag gctggtttat cttgcaagat
//
LOCUS       KCOD01003601             695 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 400318pyr ultra-conserved element
            locus uce-3071, sequence.
ACCESSION   KCOD01003601
VERSION     KCOD01003601.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 695)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 695)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..695
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="400318pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>695
                     /note="ultra-conserved element locus uce-3071"
BASE COUNT          193 a          125 c          180 g          197 t
ORIGIN      
        1 aacgcagact ttgaaggtgg aggttttgtt gtgagctgtg tttgggtgtg cgaaattcaa
       61 tcaaagcgaa aataattcca ttgccttctt caaagcctgc aaagggaagt tgggcagaag
      121 ctgggacagg aaattgaaat ctgaattatt ttaaactgat cgggttaaag gcctctcttt
      181 tacaccagca cacttgttct tttatttgat acttgaactc tgaaaatttt ctgtgacttt
      241 ctagggagaa ggaggagcag ctgaggcggg tgacggaggt acagaggctg caggcccagc
      301 aggcaggctc tgccctggag gagtttaagc ggcaggtgga gctgaactca gaaaaagact
      361 ctgctgaaat gaaacagcgg gtgaggaggt cacaatgcca gcctttctga aactctggca
      421 cagtgggata gcggattctg atcttataat gccagaaaca tgctccactt gagagtgcta
      481 catcaaaatc tttcacaatg tagtgtcttt gcagcaagtc agaaagggat ggtggcaggt
      541 gtttcatctt tctaacaaag ccagaattgt cattgttaca aagatatctg cagttatgat
      601 actgattagg gatttttcag gagtgagagt ataaagtgtt agtttataca ccctatggaa
      661 caacgcttgt catttttgtg tctcttccta ctctt
//
LOCUS       KCOD01003602             311 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 400420pyr ultra-conserved element
            locus uce-5399, sequence.
ACCESSION   KCOD01003602
VERSION     KCOD01003602.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 311)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 311)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..311
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="400420pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>311
                     /note="ultra-conserved element locus uce-5399"
BASE COUNT          102 a           59 c           61 g           89 t
ORIGIN      
        1 agtgcccagg cctccaggga cacaggcatc tgctccaaaa caggtcattt attccatacc
       61 cttgttattt gcagcgaaat ataatggaaa aaattgactg tttgcttggt gcaatagggc
      121 atgactcttt acacagaaat aatagctaaa cagtgatgga ttctaaatct ccattacagt
      181 gaaagatctg aaggagtaaa gcagttacaa aaataattgg ttttcttgtt tagctttaaa
      241 aagcctttac acatcgccaa atggagacga cttctcactt tattttgatt aacaaaggga
      301 acccgttagg g
//
LOCUS       KCOD01003603             637 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 400522pyr ultra-conserved element
            locus uce-2445, sequence.
ACCESSION   KCOD01003603
VERSION     KCOD01003603.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 637)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 637)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..637
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="400522pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>637
                     /note="ultra-conserved element locus uce-2445"
BASE COUNT          205 a          151 c          110 g          171 t
ORIGIN      
        1 acttttcaaa ctcacttttg gaagaaagag attgttagct tcaaatctct ccagtggtga
       61 aaataagaaa taataaaaga catcccaaca gttttatact aaggaacgag tatctggact
      121 tctaaaacaa accttgtaat tatttcatta ctaaatgctt taatctgtca ctagtgcaaa
      181 aacccaacaa gcatttcata gttctgacca ggctcctggg ttttttcttc tcactatagg
      241 acaagctttt tgcaaaaact gaatgcaaga cccctgagga gcatacggga acagaaccac
      301 caaatgtctg gttgccatct gttctaccca tttactctcc caatatgtaa ataaacgtca
      361 gtgagcacag ggaccagtga aacacacagt tgctctgtaa agcccacatt tctgcctctc
      421 ctcctgatga gcagagcagt ggcctcagaa gcacgctgag aatacaccat gaaaggctct
      481 tttgggactt gacagcctcc cctttgaacc cccctcataa ataaagccct cactgtctaa
      541 tggatgcacc cagtgtacaa ctcctgaacg aataaactaa tggctgaatg aaaaaataaa
      601 ctatcctaga accttagcag aagtgtgtgt ttttctt
//
LOCUS       KCOD01003604             525 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 400631pyr ultra-conserved element
            locus uce-7113, sequence.
ACCESSION   KCOD01003604
VERSION     KCOD01003604.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 525)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 525)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..525
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="400631pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>525
                     /note="ultra-conserved element locus uce-7113"
BASE COUNT          133 a          106 c          112 g          174 t
ORIGIN      
        1 ggagggagag ctgtgaaaga tcatttcttt cctaatgtga ctgttagatt tggctggttt
       61 agcaattaaa cttttccttt atttgttacc cctacagacc cctggttaga ataggatcct
      121 gaagttgagt ccgccagagc attgggctta catgattcaa ttaaccttta aggtagctct
      181 ggaagttggt actctaggag atccttttgt taattggcag cctgacacag acaattaagt
      241 ttgatcagat gaagagggca tcagggacat cattagcata ctgtactgaa gactacgtgg
      301 tgtgtaaaag ttgtttaatt tctgccaagg aagaaagcgg ggggctgggg gagccctcct
      361 tgcccataca gcattttgct tattaaatat ttcatttccc ttgccataag ctgcaaatgt
      421 tcccattttt tacccctcct ttttggtttc ttccactgca gtgaaatcca ctgaatgatc
      481 attcctctct tattaaaact tctgcatttc acttgaagta ttgcg
//
LOCUS       KCOD01003605             577 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 400741pyr ultra-conserved element
            locus uce-4631, sequence.
ACCESSION   KCOD01003605
VERSION     KCOD01003605.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 577)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 577)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..577
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="400741pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>577
                     /note="ultra-conserved element locus uce-4631"
BASE COUNT          171 a          122 c          109 g          175 t
ORIGIN      
        1 tgagaatcag gcctaaacct ttccaaaggt gaataaatgt gaggcctgga gctgtcattt
       61 tagtcttttc atctctagaa taatcacctc ttccagaaac aggactctgg gaagagtttg
      121 caatcgttct cttgtagctg ttgatctgtt ctgctatttt acagcaagta aattttcttc
      181 tcagtgggtg aactgcacga tgaaccatag gcaaacttct gaaaaactgc aaacacttac
      241 actttactgc aaatgtaacc ataacaattc aaagtactaa ttttctacct catataatat
      301 gtgtaagtat gccttagtaa cactcacggg aaacataatt taacagtgcc tctgtcttcg
      361 ttacctcaag atgggaaatt tctctcacat acttaacaga aggccggctg tctgagcttc
      421 ccatttccag gaacatcttg aggggagttt gtttttcttt aacccttccc tagtgatgtg
      481 tcagcttcgc tcagctaaag aaaatatggt atcttggttc tcaagctctc ctgaaagaga
      541 ggaatgaaaa tatacactgg gcgctcacaa gagaaga
//
LOCUS       KCOD01003606             678 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 400852pyr ultra-conserved element
            locus uce-1298, sequence.
ACCESSION   KCOD01003606
VERSION     KCOD01003606.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 678)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 678)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..678
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="400852pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>678
                     /note="ultra-conserved element locus uce-1298"
BASE COUNT          254 a           96 c          102 g          226 t
ORIGIN      
        1 aatactttgt aatacctttg ttgtattttt atgctgtgta ttacaacatc atattatatt
       61 tggatgatac agtaatggag caaggacagg ttctaatatt aagctctttg ctagacttaa
      121 acatttaaat gcaagtaact tcttccattc atgagaaaac acaacattaa aaaattaacc
      181 ataagctgtt agatgcttta cagagccccc ttataacaaa ggcagtttta aaaaaagaac
      241 tgtagtactg ttttcagcaa tttctttatc tctgttcttc taagtaagaa agcttattaa
      301 caagctttga acttaaaatc acatttacaa taatgtgcca tcaacagttt tataagctaa
      361 ttagaaaaaa agattaatta atgactggct gctaataaaa tggcaatcat gaagaaagaa
      421 accaagggtg ctaagcttca actaccacca attaagagct aattacaaac aaattatata
      481 tgtgttttgc tgtgggcttt aatttactaa aatggtttta attaaaagag aaaacatgct
      541 gattaattga actgcagaaa aaatctacag tataaactgt gctttgtctg tctctttaat
      601 tagacttgta acatctgaaa tcttttttta aggtttgtta aggaaaagat atacataatt
      661 aagggagcat aagaatgt
//
LOCUS       KCOD01003607             533 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 400962pyr ultra-conserved element
            locus uce-5443, sequence.
ACCESSION   KCOD01003607
VERSION     KCOD01003607.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 533)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 533)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..533
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="400962pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>533
                     /note="ultra-conserved element locus uce-5443"
BASE COUNT          162 a          122 c          111 g          138 t
ORIGIN      
        1 gttcccgctg ggaacggccc gcagcagagg gtgctgtctg cccacggtag cgccggctgc
       61 acgggaaggt cactcagcct attgataaat cactgtgccg tgattcctaa ctgacagctc
      121 aaactaacat caagctggat gagagagaac aaaaggccat caagcagcca ttttcttgac
      181 acttttattc aatcaccagc agattgctta cgacagcaat agcagctgtt ttgtcttcat
      241 ctttccacat ttgataaaag gtgtcaactc aaatttttgt aaataattca cttaccccta
      301 ctgcacacac cagcactgtt cagcatatgt attctgtgcg agaagatcac tgaggcaggt
      361 cagggctcaa tgatatcagc tgaaggtcat ctgtgatcta aacggaagca ctgataaagc
      421 tacagtccct caaggtcaaa gataagaact acactgagaa atttgtaatg tggacaaaag
      481 gttaaacaat agaaaagtat ggtattgttt catttaacac actctattgt tcc
//
LOCUS       KCOD01003608             482 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 401070pyr ultra-conserved element
            locus uce-6371, sequence.
ACCESSION   KCOD01003608
VERSION     KCOD01003608.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 482)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 482)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..482
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="401070pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>482
                     /note="ultra-conserved element locus uce-6371"
BASE COUNT          121 a          141 c          106 g          114 t
ORIGIN      
        1 aatgtcaggg ttgtgccaaa cttcaagcaa tgctgaaatc ccagcgaagg cccgttgctt
       61 cagtgctaaa agggagcctc caacgaaagg gttaagccaa gatttcagtc ccctggttca
      121 aaccgcccag cgagcactcc ctgcccaaat tacagcagtg catacatcca acagatgcca
      181 ttcagacagg ggctttcctt gccctgaggt acagttcagt ttgtccattc tactgtgcaa
      241 ttacagaatc aataaaacat ccctttgaaa ctccctggac tagtgccgac acgcagacag
      301 tagtcaagct gacatttttt gctgtttccg ttattaccac cgcccgggcg ccgcagagct
      361 gaggttttgt tcctccccca ggcaataaaa caggcaataa ctcagcgctt ccgaaaggca
      421 cgtgtgcccc accctcctcc tcttggaggg aattgctgag atcacctggc ctgctctgat
      481 tt
//
LOCUS       KCOD01003609             625 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 401180pyr ultra-conserved element
            locus uce-1689, sequence.
ACCESSION   KCOD01003609
VERSION     KCOD01003609.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 625)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="401180pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>625
                     /note="ultra-conserved element locus uce-1689"
BASE COUNT          210 a          109 c          112 g          194 t
ORIGIN      
        1 tactttctat tttctcttcc aaaagagaca aagggaataa atacttaaaa cccagtggtg
       61 acgacagtga agcaatcatg cagttgctgg atacctttgt ctcaggcagg catgtagtca
      121 tttttacatg tctgccactg ggtgtcaaac ctttcttttc ttcccctttc cattttggat
      181 ggccaaactg attatctaaa atagaaaatt agcacacaat ggctttactc tgtgataccc
      241 cttatgcaac taatgggcaa agcttgttaa ttggttgtaa atgccagcag gttgccaaga
      301 taatacttca gaaataagcg ggtattctga taattacagc aatcttcatc tataaaagct
      361 taagtagatg aagtactggc tggcttaaaa ccaagattta tcccgctgca ctcgcattaa
      421 aagaaaaaat aagatgaaaa caataatgta gcaaaacaat tatatagcag gaagcgttgt
      481 aggttttaga gattgtgaaa actcagaaag taaaacagtg ctgtaataac cagttatgga
      541 aaaataggcc atttacattt gtgtataatt aaatagtagg ctatgcaatt tcacttttta
      601 aagtaaactg ccttttcctt ttttt
//
LOCUS       KCOD01003610             604 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 401291pyr ultra-conserved element
            locus uce-6080, sequence.
ACCESSION   KCOD01003610
VERSION     KCOD01003610.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 604)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 604)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..604
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="401291pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>604
                     /note="ultra-conserved element locus uce-6080"
BASE COUNT          173 a          118 c           99 g          214 t
ORIGIN      
        1 tgcttttaat cctttatgta accttattaa aaatttcaag atggatacat tctcccacca
       61 aatctgacaa acatctggtt tacaatagag tcatgtgatg aaattccatc cagaatcaca
      121 tttgctcttc agtatgtttt ctcctactat cattcataac acagaacttc tgtgttttgt
      181 ctgtgatata agacagtaca aggatatgtt tttattagga ataatgcacc atcatttccc
      241 ttatagaatt taaatctgcc atctatgtgt aggtatagtc aaatatattg atagtctccc
      301 ttgtgggttc tgctgacact tgggtttaat tgtagtgaac tttgaattcc tatcttaagg
      361 tcagttatca actattgatg gattctcctt ttctccattt aatgctaaag tattcatact
      421 aaccaagaca gatgggaatg ctgaagaaat ttttcaacgc catggcggag caagatacct
      481 tcctgtggct tttctaaaag tggtgatcac tcatgctcag cttgtgctct gctgacccct
      541 cgccactttt tgttctgcca gtactatcct atatgctgct attaggagaa aagaaaataa
      601 aatt
//
LOCUS       KCOD01003611             699 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 401400pyr ultra-conserved element
            locus uce-2441, sequence.
ACCESSION   KCOD01003611
VERSION     KCOD01003611.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 699)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 699)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="401400pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>699
                     /note="ultra-conserved element locus uce-2441"
BASE COUNT          213 a          114 c          168 g          204 t
ORIGIN      
        1 tactctgata atttagtaaa ttaaattcct aaaccacatt acaaatgaaa actaatgtta
       61 ttgctgaagt ttctttgttt gaccttctat tcctagagaa aagaaggtct tggctagaag
      121 acagttcaat aaatgatata tattgatcct tgttatgtaa tatgatttcc cttcccttgc
      181 aagggttgct gttgtacagg atagggctgg gatcatggtc atggaagcgt atgggaatgt
      241 gtagactaag gaaggctgtc acagcagtca ataagatctg agaggtgttg actaattgcc
      301 tgctaattac acagtaaatt gtctaattaa gctgatggtt aattagggta cgctcgcaca
      361 gcagtcttat ggaatttttg tctgatgtct gggaagcagc ttgtgtaatt ggcaaactgg
      421 taaggactgg cagagaacat gactgggaag cacgctgcca gtagatgaca gaataaggat
      481 gcgtttgcac aaaggttgtc atgtgaacac gcaggggttt gttagccttc tccagctacg
      541 tggcagccag cacaacgagg aatcgagctg aaagctgctg gaagctgtaa ataaaataag
      601 gcttaagcgt gtgatattag aaaagcagtg acatgtgctc tttattttag tcagtttgaa
      661 ctaaacacag ggtatcaaaa ttctcatgta cagaacttc
//
LOCUS       KCOD01003612             624 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 401608pyr ultra-conserved element
            locus uce-7819, sequence.
ACCESSION   KCOD01003612
VERSION     KCOD01003612.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 624)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 624)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="401608pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>624
                     /note="ultra-conserved element locus uce-7819"
BASE COUNT          177 a          126 c          135 g          186 t
ORIGIN      
        1 cccactccct gtagcagaca ttgtgtacca attggttatt cttctcacct ccctcatatt
       61 ttattgtgat gaaggagggg gagttgttgc tattgttgca aagaagattc tggaatctgt
      121 gaacacaaag tattagtatt ttaaataatg agaaaaaatt ccacatggaa agctcatctg
      181 gctgtggcag tttgtgactg aatgagagaa aagtgcccta gaagctattc attaggaatt
      241 cactggaagc tctcaaacaa gcctggcaga agctgaaatt gaagtggtct ctgacctaat
      301 tttcttctgc atgaaacatc tgcatcaagg cactctttga tgtattccac ttggctctgt
      361 ctacagtatt gtatcacatg gcttcagcgt tgcctcagtt ttaaaagaca tttccagcct
      421 gtagaaggta atgtgatgtt actgttaccc aaactaatca ctcaatgtgc tcccgaaata
      481 gaaacaatag aggttcagac aacggtgtct gctttgcagt cgttgttgct gcctaagctc
      541 acggcccaga tctgtgatat tcatctcatg taattcatca acaccaggaa ggggagggag
      601 aaactgtgag ccttctgtgt aata
//
LOCUS       KCOD01003613             661 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 401720pyr ultra-conserved element
            locus uce-1263, sequence.
ACCESSION   KCOD01003613
VERSION     KCOD01003613.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 661)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 661)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..661
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="401720pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>661
                     /note="ultra-conserved element locus uce-1263"
BASE COUNT          209 a          159 c          131 g          162 t
ORIGIN      
        1 gaaaataatg atgtctccta atgacagctg tcaaagggat ttgtaaaaag ctttctggaa
       61 aacccagtgt acaaaatgct tgacccagtt gtcattaatt ctgcctagcc cagtcacttc
      121 ctcctgcacc aggagctcat tcctgcactg gctggtgcaa aggcagtgtg ggacaggcag
      181 cgagagagag cagggcagct gcaaaccaaa atcaccctgg ggaaactaga taaagttttc
      241 aacaataaga ttccagagac tgctgactgg agaaaagctc aatattttag tctcagtaca
      301 aatttgcttc aatcttatac aactcccatg cagcagcatc cacagctgca tgctgtaaac
      361 aacaaacaaa tctatttcca tcagccctgc tgatgctatg agaaaagtgc ctgagcataa
      421 gacatgcaca gatgtagagt ctcacctgag cctagtgctg ccctccattt ggcccctcta
      481 acttaatatc attgttacaa agctattggt ctcctggtag cgagctggct caatgcagag
      541 cctcttcttc cagctaatct gacaactccg atccaagaag catcaagggc ccaattaaga
      601 agacacatct tatcaaggag cttattttgc ataacagaat acaaatgacg aataaaaatt
      661 t
//
LOCUS       KCOD01003614             737 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 401829pyr ultra-conserved element
            locus uce-1631, sequence.
ACCESSION   KCOD01003614
VERSION     KCOD01003614.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 737)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 737)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..737
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="401829pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>737
                     /note="ultra-conserved element locus uce-1631"
BASE COUNT          223 a          127 c          132 g          255 t
ORIGIN      
        1 ttcaattaat gaaaaatggg aactgcttgg ggtatttgca tttttattac tgtttgtggg
       61 ttatgtgtac atttttgtgt gttgaagtac actgtctgtt tgatttctaa tttggagcac
      121 aaatatctct ctctttcaat ccaccacgta catttcaaag aagctactca ttctattata
      181 aaactccata gccttttcct cttgtgttga ttttttttat tccatgcttg tctcctgtct
      241 gactttaata attttagttc tttaatacat aaaaaatgta agtaaaatat gccatgtatt
      301 atgggtatgc accaagtcaa ctataatgca gtatatctga tatacactga ctgtcatgct
      361 tgagtgaatg ttaatagaat ttattctgaa ggtacatgtt agagacatct actgtttaac
      421 tatttactat acctttaaga tgaaaagtgg ggttgtcact gcatatttca ggtcacactg
      481 atggctcaaa aacaaatata cagattcagt acaaatctgc atacctgaag ctgaaaatac
      541 agccaggata tgtttcatgc tgctgtattc atctcacttt tgacaaaagc caaaaaagtt
      601 tcatgtaatt catttcacgc tatgatgggc tgggtctcag ccaaagagtg agatacaaga
      661 atctggcaaa aaagcaatat agggattctg ttacccagag accggtgatg gcactgtgca
      721 ggagacacta ttgtcct
//
LOCUS       KCOD01003615             855 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 401938pyr ultra-conserved element
            locus uce-5019, sequence.
ACCESSION   KCOD01003615
VERSION     KCOD01003615.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 855)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 855)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..855
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="401938pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>855
                     /note="ultra-conserved element locus uce-5019"
BASE COUNT          217 a          144 c          171 g          323 t
ORIGIN      
        1 gtggcatttt gctttcatta tccctcgtag atgtttaaaa cagtgcctgg tgttttaaat
       61 tacttctgtt ttgctttaaa atgagaactt ctgtttgaat agcctattgt tctgttagct
      121 actacattgc acttcaaact gcagagtgtt attttttggg atcatataaa atatttgttc
      181 tctccctgtt cccaacctat aaacttcata tctcgataag gagtttctaa cccttggaaa
      241 tactgcttta caaattcagc taatgaccca aatacagctt gtttgttgtg tatgagttgt
      301 attaaaataa catactctat gtgtattgtc attaatgata tgctcatttt gataatggag
      361 ctgcagtctc ttagtatgta gtccttgggg agatgctgca tttttttaac taagtattgt
      421 tctggctcct ttccttgatt ggcccagaaa tagcaatcag ctggggagca ggatgacatg
      481 cctcttagcg atccctttta tctttgagat gagtatcaac attgtatgct tcctaatgga
      541 agtgtaattt aatgaaatct attgggtaaa catacttcag atgttcaaag gaggtgacaa
      601 aatttttgct ggcagccagg acctggctgg tttccagctt gcctttagct gctatgcata
      661 tagcattgag agaggcactt aaaataggaa cacaaagtat tgtttctatt gtgtttttgg
      721 ttgtggattt tttttctctg ttttcaattt tattttttgg tatttgtact agtgccctct
      781 gacttccagg cttttctagt aaaatgctgc gtgaggtcag gtttcataga tgacagtgtt
      841 aaactcaggg gagat
//
LOCUS       KCOD01003616             709 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 402045pyr ultra-conserved element
            locus uce-2773, sequence.
ACCESSION   KCOD01003616
VERSION     KCOD01003616.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 709)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 709)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="402045pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>709
                     /note="ultra-conserved element locus uce-2773"
BASE COUNT          191 a           97 c          154 g          267 t
ORIGIN      
        1 tttatattac tgttaatgca ccttggattt aaatgctttt cttttgtgcc attatatttg
       61 attccatagc gagactttct aagaatatga ttaaccctct gggtcatctt ataatgtaat
      121 tattaatgat ggattctgtt tatccttggg atcaatatga gaagcggggt tgatttctta
      181 cattcagtaa acatgatctg gtgacaagac tggtattggt ttattactcg gaacgtgttt
      241 gatgaatctg aagtgtgtaa ttagttttat ataatgatgg tgatatgtgg ggttttttac
      301 atgacttatg ttaatatggc caatagtgtt aacatctcct gccactaata gttagggtgg
      361 ggatgtatag taattgatct tcctgggagt gctgtaatgt aaaaacaatt ccggctgttt
      421 gaagtatatt ttacaagtgt gcattgggcc tttgggatgt tatactgaaa aacccaattg
      481 tacagttacc atgggaaccc aattagaata gattgctgga caggctttca tcttgaccaa
      541 aaatctaatg tactttaaat gttttcatat ggaattttgt tcatatagtc acttggtgta
      601 gtggctggtt tttaattttg gtgctgaagc agagtgttct gttgaggatc ccatggactt
      661 acccttcaag gagaatcttc ctttagtgtt ttaaagttga tgaactgag
//
LOCUS       KCOD01003617             344 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 402151pyr ultra-conserved element
            locus uce-4602, sequence.
ACCESSION   KCOD01003617
VERSION     KCOD01003617.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 344)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 344)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..344
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="402151pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>344
                     /note="ultra-conserved element locus uce-4602"
BASE COUNT           90 a           72 c           88 g           94 t
ORIGIN      
        1 gctcaacaca gccctttggg aggcctgtgc tctattgttc ttccactgag ctcttgagcc
       61 cctataaaac acttaccttt cactagtatg attaagaaaa ggccaatgta gctttcccgc
      121 tcaccggagc atgaagcgtg tttaatttaa taatgctgat aaatcttaaa gccaggagca
      181 tttggctaac acatgaccca ctttttcaat caattggaag catttacata acggccttgc
      241 agggttcctc ctgcgaggga cgtggagctg gggggggaat ggctttagac tgaaagaggg
      301 gaggattagg tgagatttta ggaaggaatt cccctgtgag ggtt
//
LOCUS       KCOD01003618             661 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 402259pyr ultra-conserved element
            locus uce-3262, sequence.
ACCESSION   KCOD01003618
VERSION     KCOD01003618.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 661)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 661)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..661
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="402259pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>661
                     /note="ultra-conserved element locus uce-3262"
BASE COUNT          216 a          142 c          119 g          184 t
ORIGIN      
        1 taaacaagga ataaaacatt tttatatttc tccctaaact tatttgcttt ttgaaaatat
       61 ttatgcagca caaagacatg agtttagtga gaaatacagc cagttcctct tgtttaattg
      121 aaacatttat gctttttgtt ctgcaaaaag caatgaacag taatattgca agataaatac
      181 acaagaaact tatagatatg attgtaaaac aacatcatcc taatgtttcc acttaattac
      241 cctgaaatgt attctattta atattcatta ctcaaaagcc aatttaaaag agaatgaggt
      301 gaagggactt attcagaaag acggactgtc attcactgca atagttatct aatatacaga
      361 agttaataaa gcagattaat ctacaagtcc ctttaagcca tcactgagtt tagaacaact
      421 gcctctttga cccctaaccc tcccgctgcg caccagtagc aggtgccagc tgcactgaaa
      481 tgatggctga ggcgttttaa ggcaaagtct tttcttgctt tgcttctgac cagcagctga
      541 ccctgtagaa gcgattgttt catgtgctgg cctaaaggct acacaaacca gcaagggata
      601 aacaaaagca gacacggagc agctgcctcg cccggggccc tgcagcgccg acacctcgcg
      661 c
//
LOCUS       KCOD01003619             479 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 402475pyr ultra-conserved element
            locus uce-3194, sequence.
ACCESSION   KCOD01003619
VERSION     KCOD01003619.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 479)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 479)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..479
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="402475pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>479
                     /note="ultra-conserved element locus uce-3194"
BASE COUNT          136 a           80 c           94 g          169 t
ORIGIN      
        1 ctgctcctat ctttgccaca tgacataaat gcagttttga tttcattagt ggagggaact
       61 ctctgaaatt tttaaaagtt ataacttttg attgggggca gttaatcagt gttaaccctg
      121 agcagctctt gggccttatg gattcaagca ttatatgtgg ttgcactgct ccagcaaaag
      181 gttaagtatt aatggaaaat gttcacagct cttttactca aagaaaacat gttacttgta
      241 agttttcttt tgattttact tttacagtta cgttgaatgt cttcattcat ttagccatcc
      301 ataaagcaaa tattgttgca catgcagtgg ataataagtc tttttaggac tacttgtgtg
      361 gtatgtcaca gatcattaac tgcaagtaac cacctgactt gagggaagtc tggaagcatc
      421 attacagtga agtaagcttt tatttctgta tcactgcagc acattgattt gtaggaatg
//
LOCUS       KCOD01003620             724 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 402582pyr ultra-conserved element
            locus uce-5494, sequence.
ACCESSION   KCOD01003620
VERSION     KCOD01003620.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 724)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 724)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..724
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="402582pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>724
                     /note="ultra-conserved element locus uce-5494"
BASE COUNT          236 a          145 c          155 g          188 t
ORIGIN      
        1 ctgctgtcat attggtgaca tgacacagat attgtcaaga aaaagtaaac tggggctggc
       61 actcgaaggc agctcgtgaa gagatgagca gtcgaacagc catattcaat aaaaaagagg
      121 aacaggattc ctttagaaaa tctattgctg ttgtggcaac gtgctgctgc cactgaaggg
      181 actgatttgt tatttagcat gtagtcttgg actgtctgtc attctgggtg ctaatgctct
      241 gctaaaataa ctcattggga gctgtcagtg ggatgtttac ataggccccc aatcttttct
      301 tcatacaagg aaatttttta ctggaattca tcttcttttg atctcacatt caaagcaaca
      361 gcagcttgat agacatgcaa gtctgaaagc aaatccagac gctgaagata aaccgccaga
      421 gtatgacagg caggagcatc taaagcttat aaaaatgaag agaacagcat gtcgtctgag
      481 tattacaata gcagaaatca agagacatat taggtggaac tgatcagcca caaaaacagt
      541 tcaaaaggca gatcatagaa acagaagact aagctagaat aaaattggaa agatctgctt
      601 tacagaggca tcacctcctt tctgagcacc gcggcgtttc cgctccagca tgtaaactta
      661 aaaaagaaca gggctggtgc tgtctctact aactttctta ccttcaactc accaattaat
      721 ttgc
//
LOCUS       KCOD01003621             540 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 402694pyr ultra-conserved element
            locus uce-4917, sequence.
ACCESSION   KCOD01003621
VERSION     KCOD01003621.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 540)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 540)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..540
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="402694pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>540
                     /note="ultra-conserved element locus uce-4917"
BASE COUNT          187 a           78 c           86 g          189 t
ORIGIN      
        1 aaagcttctg atgatgctca tattttcgat gttctaaatt ttataaagaa gtattgttac
       61 gactttccta tttaattcca aggtgaatgt ttaaaaaatt cttagacaag tgtgtgtatg
      121 cccttcaaag taattagcaa gtttcaacag tgattggtac aaaacaatta ttgtcattga
      181 tcagcactga acagataatt ttaaacaaag tcattgtgtg ctcagcagat tacagcttgt
      241 taacgggcaa gttctaaatg acctcttaag ctagtcaaat caatgatgca tattcctcat
      301 taagtaacat caaaatgtaa gtggtcttat aaataatgtt tattttaagc actaaaacaa
      361 atggcaaaac cttgatatat caaaagccat ctgctcgtgg tttttttttg ccataggatt
      421 acttttgttg ctgaaaattt gcagcaattt taagagagag aataattttt tgccttaaac
      481 tgaaactgat taaaacaaga tctctgattt aattttagaa ggtaaaattg atagctctta
//
LOCUS       KCOD01003622             680 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 402804pyr ultra-conserved element
            locus uce-3492, sequence.
ACCESSION   KCOD01003622
VERSION     KCOD01003622.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 680)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 680)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..680
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="402804pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>680
                     /note="ultra-conserved element locus uce-3492"
BASE COUNT          231 a          104 c          133 g          212 t
ORIGIN      
        1 caggatgttg cataaaaatg atcacaggat tcataacagg gagaaacatc ttgtctttag
       61 ataacagcag tgccaaaagc catataagtc aagctacttg ttatgtttag gagaaaggaa
      121 tgagcgagtg gttttgcata caatgtttta ctaaaattac tcctactctc agaataaact
      181 acagagtgca aatgccaggg tgattttttt gttgctgttg ttgaagacat ggtagattgg
      241 ttaaggtaga gaaacaaatg tagttgcttt gatttatcac ttgtgacatt agcgtgtact
      301 ataccgttct cctggaaaca aaatggttgc acctgaggac agtgatataa acactacttt
      361 gattatttga aacaaaccat taggctttga tgaaagaacc attactttag tagaccttgt
      421 acagagagcg catttggaga taatggatga gcagcctaca aattgcttgc tttgaattta
      481 aagaagtcac atgtttgttt gaacttcatg gcataaacag ataccagcaa gacaagctaa
      541 tggcatactt acaacgttgt tgaaaaacac tgttgcaaac tttacttgta atactttaat
      601 tttagagtgc acactgaaaa aaatcaatta actgtttgat gtgtatacag catacacatt
      661 tgtatattac ttgtattaaa
//
LOCUS       KCOD01003623             679 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 402914pyr ultra-conserved element
            locus uce-5346, sequence.
ACCESSION   KCOD01003623
VERSION     KCOD01003623.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 679)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 679)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..679
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="402914pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>679
                     /note="ultra-conserved element locus uce-5346"
BASE COUNT          146 a          157 c          203 g          173 t
ORIGIN      
        1 cactgttgta ctcccgagcc acctgcccct ctgcttcggg catgtctgga gtctctctgg
       61 tcactgtgtc ccagagctta gtgctccttc ggagagattt tggtggcaca ggaggcaccg
      121 ccgcggtcct ggctcccgta aagcccagct ggaggccagt gatctcggct cagcccattt
      181 gccccgctga ggagtagaga ttataatggt gtgttgtata ttttttaatt tcctaaaggt
      241 aactgttcag tccccaccta attttacaca gcatgtgagg gagcagagcc tggtgacaga
      301 tcagctcagc cggcggcttg tccgtaccta ccagctgtac agccggacca gcgggaaaca
      361 tgtgcagatc ttggacaaca agaaaatcaa tgcgatggca gaggatgggg atgtgcacgg
      421 taaggacaca cgatgtgggc aggcgggggg agctggggag gtgttcgcag cccatctggc
      481 gattgatgat ttccgtcctg tttgttagcc agaaatcgtt aaaatcgttc agcttgtggg
      541 ggcttgtaaa aggataacat aggggtcagt aatcagcagc tgtgtgattc aaggtgaggg
      601 caggttctct gtgccaaggg aggggaccag ttcttgaagg atagcttctt tgcttttaat
      661 tcttggtttg cacctgact
//
LOCUS       KCOD01003624             428 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 403017pyr ultra-conserved element
            locus uce-6427, sequence.
ACCESSION   KCOD01003624
VERSION     KCOD01003624.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 428)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 428)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..428
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="403017pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>428
                     /note="ultra-conserved element locus uce-6427"
BASE COUNT          143 a           78 c           64 g          143 t
ORIGIN      
        1 tgtttactaa gtgatattca acagatttcc tatagtgcaa tgaaccttaa caggcagctt
       61 ttaattgcct cgcataggaa accacatcac tattaattcc acagcaacag tataaaataa
      121 aactattgct tctcagactc tagagcaatt agacctctcg gctatttggc taactctgct
      181 gcatgatacc cagtgcagtt aattatattt tttgatgtta atagtctctg tcagtttcaa
      241 gcataactcc tctttgatga atatttaaat tatatttgaa taaaaaaata atcttggtta
      301 catttcatat tcagcagtca tcacagctta ataaaggtct cctcagaaag ggtagagata
      361 aatggctata tgaacacatg tataaagtcc taaatcaact tatctgataa tgtagctgtt
      421 ttggctaa
//
LOCUS       KCOD01003625             442 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 403128pyr ultra-conserved element
            locus uce-309, sequence.
ACCESSION   KCOD01003625
VERSION     KCOD01003625.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 442)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 442)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..442
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="403128pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>442
                     /note="ultra-conserved element locus uce-309"
BASE COUNT          148 a           85 c           70 g          139 t
ORIGIN      
        1 ttttatagac ctctctcatt aaaagtcacc ttcagaaaac actgctgcac cttacgtata
       61 atcaaatgac acctcataac cccctaacca tttttaatat cccctagaat ctattgtatt
      121 ataccaaggc tcagacactg tctaggtagt caaggaaagg agtataccat catatttaaa
      181 agcagttatt gggacagctt ttacaggcag tgggctaaga caattcagaa acaattgctt
      241 atgtgatagt ttgaggattt gtccctgtca aacagttaat attgctttaa tacatgaagt
      301 aggctgtata agacagcaat aatgaaaaat gtcaggaaag acaatatcaa ttgttattca
      361 acatccacat caaagattac ttttttgtca gtagctttca gaaaatgtat tttccatcag
      421 atctgattgc gttcctcttt ga
//
LOCUS       KCOD01003626             417 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 403232pyr ultra-conserved element
            locus uce-6353, sequence.
ACCESSION   KCOD01003626
VERSION     KCOD01003626.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 417)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 417)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..417
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="403232pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>417
                     /note="ultra-conserved element locus uce-6353"
BASE COUNT          118 a           80 c           94 g          125 t
ORIGIN      
        1 cgcgtataaa tcattattgg cgaacatctc agctcttgag ccaggctgtc gcttgctgct
       61 gctcgtggtg cagcccagac ataaatcata attcccctac aatagatcct tttgcagccg
      121 ccatcaggaa aagtgtgttg gttttatcga ttttttgaca ccagggccct ggcaacggcc
      181 gctctgaatc attatgaaat gaaactgatt aggaattcat ggaatactaa ataaacttta
      241 cgagcctgtt gtaagttttt tgatgcatgg ggagcggaaa atgaaaacta atgatataaa
      301 aattacacag cgtgctgagt attattatac tgctattgat ttgtttcaaa ctgtacatca
      361 aaatcgaagt gtgctgggtg tgcttggctg caaggctgat gctcaaaagc ttttgag
//
LOCUS       KCOD01003627             544 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 403340pyr ultra-conserved element
            locus uce-2937, sequence.
ACCESSION   KCOD01003627
VERSION     KCOD01003627.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 544)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 544)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..544
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="403340pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>544
                     /note="ultra-conserved element locus uce-2937"
BASE COUNT          187 a          104 c          100 g          153 t
ORIGIN      
        1 aaattcagac ttacggctac ccacaggaga aatacatgac agatccattg ttctgtatta
       61 gcaggatatt gtcccagtat atgaacacat gcaaactttg aaggctttga atatttaagg
      121 caagacacta gtggctcatc ccagtgggaa ccacagaaaa ggggaacctg attaaattta
      181 atgtcattgt cacttttttt tccattgcta agaattatat aggtagccat agctaccaca
      241 ctgttcagac accatgacca caatattctc cctcagaggt tggcgtcaag ggctgaatta
      301 ttcactccaa gaatgcgatt cattacgaga tgtgattctc tcagattaaa agatttgtca
      361 gtacataaaa tacatgtaca tataaaatcg ccattatgca aaagacacca atgtttattg
      421 gtattggagc acatccccat tgagaaagct ctaaagtaac tgagaagctt tttactattt
      481 actgtacaac aaattatgaa gttgaaaact aaggcaggaa tatgtaggag gctacttaca
      541 gaca
//
LOCUS       KCOD01003628             542 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 403449pyr ultra-conserved element
            locus uce-4070, sequence.
ACCESSION   KCOD01003628
VERSION     KCOD01003628.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 542)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 542)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..542
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="403449pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>542
                     /note="ultra-conserved element locus uce-4070"
BASE COUNT          191 a           98 c           86 g          167 t
ORIGIN      
        1 taaaataata ataataaaaa gatttgaagg tatttttaag ataatttaaa tataggactc
       61 ttttcatcta gctatcactg cagtaatata aatgaagcaa attaatttta atgctccaag
      121 gtactgattc tgtgtcactg tcactgacag gatccaacta gactttatga gatggcactt
      181 gactttatgg aagtgagcac tatgcacgca tttacaattt tacagggact ttaagctgtc
      241 atgctgaaaa atgtttataa aacattaatc aaaaaatgcc tctttaatac aatgcattgt
      301 ctgaaagatg ttagaaggca catattgtaa atggattctt tttctgactg aagtaatttc
      361 gaccaaaagc ctttccccac tgctatacaa gtacacagtg tggagagata aagagcactt
      421 tctcagcaca ttactacctg atccaaacac ttgggaaatc actaatgtac agcatgccat
      481 atttccatgt cacacatgac acatttgtct aaaattaccc aacagagttt gacattgcag
      541 ca
//
LOCUS       KCOD01003629             514 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 403557pyr ultra-conserved element
            locus uce-5918, sequence.
ACCESSION   KCOD01003629
VERSION     KCOD01003629.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 514)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 514)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="403557pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>514
                     /note="ultra-conserved element locus uce-5918"
BASE COUNT          178 a           96 c           91 g          149 t
ORIGIN      
        1 tgactgtcat caagtagact agggtcactt tgggaaaacc cattctcagt gatgtaaatt
       61 atagggttat cctagaacaa gagagagcag aagttttatt cagaacagat gtaagaaagc
      121 ccataaaatc agatgcatta ccctctatct tttctaagct acaaactaaa actagttttc
      181 atcaaattgc actgacccta ttaacttaat tttctatgaa gtgacctttt atgactaaca
      241 atggaaaagc aaaactgtgc aaatatccat gaagacagtg aaatgactta ttttaatgag
      301 aagactaaaa tatctttcct gcattagcat ctgcttattg tcactgctcc ttaacccctt
      361 ggtactggca gacaccacat gtctcctttc caggagtaga tgtatgccag ggaagcctta
      421 ctgctggcat cagaaagata atttctggag ttcaaaagat gtgtgtcatt tcaaattgta
      481 aaacagatat caagaaaggt aataggaaaa cact
//
LOCUS       KCOD01003630             776 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 403666pyr ultra-conserved element
            locus uce-4068, sequence.
ACCESSION   KCOD01003630
VERSION     KCOD01003630.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 776)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 776)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..776
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="403666pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>776
                     /note="ultra-conserved element locus uce-4068"
BASE COUNT          222 a          142 c          160 g          252 t
ORIGIN      
        1 tttgtttagg atgcaaattg ataaagagta atgactttat tctcatgtct gagcattcag
       61 actgtttgcc agaatctgcc agagtctact gttgcagaaa ttgttaattg tgctagtctt
      121 tttgaatata gatgttttcc tgaactcacc aacaatataa taagccagta aatctaagtt
      181 tgaccagctt gttattattg tgagccctgg gtatgtcaga ggcttttcac caagtcaggg
      241 ttattaatca aacctgactc ctttttattg attagacctc aaatggttgg gttatgtgcc
      301 accctgttta tatattgcta tttaatttgc agccaccctt cgtgcactct atctaagtga
      361 caacgatttt gaaatcctgc cgccagatat tgggaagctc acaaagttgc agatagtaag
      421 taatttatct aaattcttgg aaaatcaatt cacttttgca acacttgtag gaatagaatc
      481 cagtcaattt ttgcaggaat agaccactac acctggaact gtttcttgtt taccagaaga
      541 cacttgtaaa taaattggaa gacctgagca ttcaggagaa aggtgggggc agagggagta
      601 gagttctctt ttgggctgct ttatggtaac tgaaaattgt tctgactgaa tttattttgc
      661 ttgtagctga gtcttagaga caatgacctg atatcactgc ctaaagaaat tggtgagctc
      721 acgcagctta aggaactgca tatccaggga aatcgtctta ctgtgctgcc cccaga
//
LOCUS       KCOD01003631             406 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 403776pyr ultra-conserved element
            locus uce-7832, sequence.
ACCESSION   KCOD01003631
VERSION     KCOD01003631.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 406)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 406)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..406
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="403776pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>406
                     /note="ultra-conserved element locus uce-7832"
BASE COUNT          112 a           87 c           80 g          127 t
ORIGIN      
        1 cagggaagtt tataaccagg cttttagtgt gttccatatt aaaagatggt tgcacctcat
       61 aggtttgtcc aaaaatgact cctggaaaag aattaacaca tcacctggac tttgcatgtg
      121 aagctttaac tttttgataa acagcaaact catctcctgc tgtgccagct atttttaacc
      181 caccttgttt ttttattgct ttatacagca tatctgattc tctctaaagc acaaactaaa
      241 aaatctatcg ggctgtcatt tgctgcacag tgccatctat catcatgcag cttggcagct
      301 ggagtgctgg ggggctggag caggaggcac agtcaaggac tttccttgtc acaattattt
      361 atagctcttg ctggggcaca taataggaca cataaaacct ctgttt
//
LOCUS       KCOD01003632             753 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 403883pyr ultra-conserved element
            locus uce-333, sequence.
ACCESSION   KCOD01003632
VERSION     KCOD01003632.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 753)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 753)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="403883pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>753
                     /note="ultra-conserved element locus uce-333"
BASE COUNT          216 a          131 c          142 g          264 t
ORIGIN      
        1 catcctagga ttctgtgctt cactggagtt taggtagagt ttcataaaag ctaaaccttg
       61 tgaagtttta aaacaggaaa ataagttgac ttacttggat gttgtggaag cagaattgcc
      121 tcttgctttt atttaggaat gagaagttaa gctgtgcatt acaacagtat ttctggagga
      181 gatccagcaa attgatatat aactctgcac aagtctacca attgcttttt aattggtatt
      241 atagacctta ctctgaagct aggatgtttt attctcctat gtgtgaatat gtgctatgaa
      301 gtttttctaa ttgatttgct ttgcccattc catttgatgt atcatttttc acaatatttc
      361 ataatttgtg ctcatttcta atgaacagag tcgttaggac aggcatgtct aagtacaact
      421 gacagctaac attaggtgcc agatgcagtt tataaagcta tgtagaactg cagagaacag
      481 tttaaataaa ttagcacctg tacattagtc tcacttgctg gtaatttata agcgaatcag
      541 tagagatgac atttaggtaa gtcattgatc aagttaacag ctgcataccc actgcccagc
      601 tgggatacct aattaataga gattgcagtc ctgacctagt gcttttcccc gtttgagtct
      661 gtaatccttt tattttgtga tttaactttt aacttgcagt tgtagtaaac agcccacagt
      721 cattttccac tgtcagttct gtgatattcc act
//
LOCUS       KCOD01003633             685 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 403995pyr ultra-conserved element
            locus uce-4146, sequence.
ACCESSION   KCOD01003633
VERSION     KCOD01003633.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 685)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 685)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..685
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="403995pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>685
                     /note="ultra-conserved element locus uce-4146"
BASE COUNT          215 a          150 c          129 g          191 t
ORIGIN      
        1 aagtgtgcta atcttacatc aacaaccagt ttgcttcaga aaataatgtg ccctgtgttt
       61 cttcaaatcc tgagttcagg ctttctttct tggattctgt ggcaaaaggt ttgcatcacc
      121 ctgtgactgg gacacttgga aagacatttg atagggaaag aaaagccctt atcagattag
      181 aactggcaga gcaaggcact gtcggtgatg tgtaagaggt atcacccacg tgtcagctgt
      241 gctccatgta aattaaagct ctggcaaaag ggtctgaagc aaactcttga aaaccacaat
      301 gtcgatcata ttaaaaacag caggagagga gaattaagaa agaaaagcat ttctaattct
      361 ctttcaaaca tgctgatgct gccaagcttt tgtcataaca cagtgctcac attacacaaa
      421 cagccatcat attctacagc cattaataaa tagttattgt ccttatgggt acagcctcac
      481 atacccatct cccctgggct tgggtattct aaataaaagg cccaggcaaa ccttctcaga
      541 atttggctct acagccattt gtgggttcga gataaacatc tgacatttgg atcacaaagt
      601 gcatctgcag ccaattaaac tactactaaa ttaacagcta actttctcct gttttgttcc
      661 tgtaaagcct ttcagaacaa ccaaa
//
LOCUS       KCOD01003634             533 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 404103pyr ultra-conserved element
            locus uce-2321, sequence.
ACCESSION   KCOD01003634
VERSION     KCOD01003634.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 533)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 533)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..533
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="404103pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>533
                     /note="ultra-conserved element locus uce-2321"
BASE COUNT          180 a          111 c           98 g          144 t
ORIGIN      
        1 ttgtggaata ataatgctaa gaattaacat gtgaacaaca cctaagcaag aaaaaacgtg
       61 catgcaacca gtgccatgtt tcaaagcaac tgtcctctgt agtgctgagg tacatatttc
      121 tatacctccc caacagacta gaaatagaaa agacaaagca tataataaag ccaagcacaa
      181 tgaaagagct ctgaagagag agctgaaaag tagctatcat gttggcagat aaattctaca
      241 cacaattatt cattcctagc ctcttgacat gtagattaat gagtttgata acccaggctt
      301 ctaagaagta gattcaactc tgtttcacta gctttcttct cctcttctaa ctacaaacaa
      361 cactttggtc tacaaatcga tacatttgca ctggtcatca acatttttgc aattgaagtc
      421 ctacgtcaaa aatatgatat ctgctgtggg acaaggctct ttactggccc tgtcaggaat
      481 tcacaggggc tcatgtgatc actggaggga ggtgccaagt tcaaagtcat aca
//
LOCUS       KCOD01003635             719 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 404213pyr ultra-conserved element
            locus uce-526, sequence.
ACCESSION   KCOD01003635
VERSION     KCOD01003635.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 719)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 719)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..719
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="404213pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>719
                     /note="ultra-conserved element locus uce-526"
BASE COUNT          235 a          122 c          148 g          214 t
ORIGIN      
        1 atctcacagc aggctgtttg aatgtgctcg tgactctggt agttctggaa aaagtgtaca
       61 ggcctctcca gtgcagcaca tgctgaacca aattaagcac aggttagcat atatgcttgt
      121 gtggtctcag attgaattgg ttactgtggt ttctgatgta taaaactgtt aatgctctag
      181 actgttgcca aacataatat gaagaaccac ttattcaggc acctgatctt tagaatgcag
      241 catcgtttgt aacaatttta acgctaacta agtacacttt gatgagacag catttaataa
      301 aatgctcatt aatttcatca ttagcaaggg tatgctaaga agtaagccag tttcttatgt
      361 cacgcccaat tagcatccca tgctagtaat cccattagta ttgttgaatt cactaatgga
      421 aaaactaatg ggcatgctac cagggcacat taattgggca tgacaccggt tctggtttta
      481 attattaaac tacgataatg aaatgtgtgt gtttgtaaaa tattaaaatg ttgaaatagg
      541 agagaagaca ataaaaaata gtatatgaaa cattagtatg taaatagctt tgtattctca
      601 tggggcagag gctccagacc tcagtaccag gatgctggct gaatggagta ggaaacatgc
      661 tgtaaatatt aacaggaaat aaaattgtgt acatatgtac gcatcacaac cgcagtgtc
//
LOCUS       KCOD01003636             558 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 404320pyr ultra-conserved element
            locus uce-4697, sequence.
ACCESSION   KCOD01003636
VERSION     KCOD01003636.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 558)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 558)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="404320pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>558
                     /note="ultra-conserved element locus uce-4697"
BASE COUNT          167 a          116 c          128 g          147 t
ORIGIN      
        1 gtgcaatgac tggattgggc aacccaggtg caacagtaat agctgcacag aatagaaaca
       61 tttcctttag acaaactatc ccaaaggggt tataaatagg aaatggacat taccatgaaa
      121 agtaaagctt ccaatgtgac tgcatcttgt gtagcacact tggacattaa actatgaaga
      181 attttttttc ctgtcaagtg ttacaaattg acgaaataag tacatcctca gtcattatct
      241 tacttcagtg gcactttgtt ttagtgagac agtggagacc agacagcccc agtgcagttt
      301 atcaatgaaa atctaatatc gtccataagc aggggagtgg aaatcaatac ttcattacca
      361 aattgttagt gaggatgaag aagaatagca ggagtttttt ggcagcctcc tcggtccggg
      421 ttgctgtgag ttcaatgtca gggccgcggt gccgagcggg gcctggacta aggcattcgt
      481 cctgcacaac aacaacacag ccactgttac tgaccaggcg aaatgtctgc aaagctctgc
      541 tttattttgt gcacccgc
//
LOCUS       KCOD01003637             622 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 404429pyr ultra-conserved element
            locus uce-3722, sequence.
ACCESSION   KCOD01003637
VERSION     KCOD01003637.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 622)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 622)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="404429pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>622
                     /note="ultra-conserved element locus uce-3722"
BASE COUNT          198 a          124 c           94 g          206 t
ORIGIN      
        1 ttttagataa caagcaacat ttattatttc tccttccaaa ataacaagcc acatatagcc
       61 tgatgctgaa taggagggga ggacagacat ttttttatct tgccccctat aatagatttt
      121 tccttttgct caattctctc tgtgaataac aagagtggca gccattttct ctcagctcaa
      181 catcaaaacc cctttcatct gctgtctaaa tgcaaacaaa gcaaaccttc caccaggcct
      241 ttctttccag ataaattaaa actctcatgt cctggggcct aaatcaagcc tacaggcctt
      301 ccctagataa atcctttctc aacctgaaat cttcttgcta cacgtgctcc ttgtaagata
      361 attttgcagt agctaatcaa taatgcaaca gtaaattgca tttaaataaa cattagcggc
      421 cttcttaatg aataaaacct catttgcaat ttgtcaaagt cacaaatgct ggactctttt
      481 gatattcatt agaatattgg aaattggagc tttgacaggt tttatgtatg ttgcaattat
      541 gatttttgtg aataaaagaa gtgctttatt ttcacaagaa ttcttgaata aaaacagtga
      601 tatatgctat ggatgtgata ga
//
LOCUS       KCOD01003638             690 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 404538pyr ultra-conserved element
            locus uce-1814, sequence.
ACCESSION   KCOD01003638
VERSION     KCOD01003638.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 690)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 690)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..690
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="404538pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>690
                     /note="ultra-conserved element locus uce-1814"
BASE COUNT          218 a          151 c          137 g          184 t
ORIGIN      
        1 tcacactgcc agtgtgcccg gccgcattct ccgtctccgt gcaatgctcc atgacaacaa
       61 ggtgagacgg cagaggttac ccgaacagct gcttcctaag ccagaaattc caggcattga
      121 aaaccatctg tctatacatt cacaaatgta tataagggca atctatcagg ctgcggcact
      181 gcagctgcca ctccatcagg cctgcttcct ttctccaggc tgaacaataa gagctagttc
      241 ttcactttgt gtcacacaga atggctgatt tgattaagtc cccaactctc attatgctag
      301 gtaggggtgt agaatttcaa tgataatcca taatgcatga ccagtttgtc gccatggtaa
      361 cataaattca aggttactag ctcagacgca taattgggtg tgcattgagt gctgaagaag
      421 ggctgttaaa attcttgtca tagaagagta gcatccatca tacaaattgc aaagtactca
      481 taatcagaaa gaaaaatcct tggagaaaaa tgttaataaa ataacgatta catctaatat
      541 aattgccaaa gtggttaaag tattttagtt aataagaatg gaaaaggcaa ctcattaact
      601 gcagaagact tcgtttgaac attccccacc ccccaatatt tgcattgtaa gatggaccca
      661 aagcagttca gctctgaagc tgactgatta
//
LOCUS       KCOD01003639             311 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 404640pyr ultra-conserved element
            locus uce-5611, sequence.
ACCESSION   KCOD01003639
VERSION     KCOD01003639.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 311)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 311)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..311
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="404640pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>311
                     /note="ultra-conserved element locus uce-5611"
BASE COUNT           94 a           61 c           44 g          112 t
ORIGIN      
        1 agacttcaac agcattcctc tgcagtggtt gcacttgcta aaagtttaaa acagtaattt
       61 tttcccaaga aaggtcatct tgagctaaaa tgtcaaataa attatttaga ttactgaatt
      121 agaaaagtga ggatctgaca ggctgaattt tttatgcaca ttagccacag tcagggtctc
      181 tatatgctct ttctattaag tgaaccctct cttcccttat taagaatctc tccatttatt
      241 ccaatatatt ctccttaaga tgtatctttg catctaaata gctggtccaa tttgcttctt
      301 acttatatca a
//
LOCUS       KCOD01003640             322 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 404742pyr ultra-conserved element
            locus uce-4210, sequence.
ACCESSION   KCOD01003640
VERSION     KCOD01003640.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 322)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 322)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..322
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="404742pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>322
                     /note="ultra-conserved element locus uce-4210"
BASE COUNT           89 a           54 c           60 g          119 t
ORIGIN      
        1 agcctagttt tctttgatct tgttagttcc gtacaagtct ccccgagaca ttctgcagtc
       61 attatcacct ttttttttta acattggtgc atataagctt gggatagagc tcatgtaatt
      121 atccaatcgt attgattgta tgtgattgtg ccctgcagag gtatatttaa caaaggatag
      181 tctaggtaat aaaggagacc atgaggtttg ttgagtcagg ttatgaacta tttctaaatt
      241 tatttaggat cctagataaa tgaaattcca tctgctgttc tcatgaatca gtgctaaaca
      301 aaatattcat tctctccttg tg
//
LOCUS       KCOD01003641             622 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 404850pyr ultra-conserved element
            locus uce-2055, sequence.
ACCESSION   KCOD01003641
VERSION     KCOD01003641.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 622)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 622)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="404850pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>622
                     /note="ultra-conserved element locus uce-2055"
BASE COUNT          213 a          109 c          129 g          171 t
ORIGIN      
        1 acctctaaaa tcccttgttg ttctcagtcc acccttttac aaaaaagagg atcaaatata
       61 accatttgtt tatcaattgc cagacttgtc cgtacaataa atgaaggggg agctataatt
      121 tagatgttaa tttgcactgt gcgctcttta atgaattaaa caatgaaggc ttataataca
      181 tggaaataca accaaatctt tgaaacacac aggcattggc tcacaagaca gctgtgcagt
      241 tgacaagtaa catgagcctt atgtgagaag aaggggaaat cgtaagattt gcatataatt
      301 attgagatca tgcaaatgtc agttatgagg aggggaaaaa aacacaggca tctcactgtt
      361 aaatcctgac agttggcatc accgaagaac tcaaatacac ttgagcactg gttggcagag
      421 ggtcattaaa acagaatttg cagagacatt agctccctca cttttctttg agtgacgttt
      481 tactattaat agtttgcaga ggctttgcag aaaacatatt aataagagaa actgtaatgg
      541 gggtatctac agcaagtgca aatgtataaa ggggtgccca agaagctagc ctctaattga
      601 tcagctagtg ctatcagtgt ga
//
LOCUS       KCOD01003642             482 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 404958pyr ultra-conserved element
            locus uce-5029, sequence.
ACCESSION   KCOD01003642
VERSION     KCOD01003642.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 482)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 482)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..482
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="404958pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>482
                     /note="ultra-conserved element locus uce-5029"
BASE COUNT          142 a           88 c           75 g          177 t
ORIGIN      
        1 ttcctgttcc ctatcagtct gtgctttggt tctctgtttt tatgtaaatt tgctcttccc
       61 agttaaaata tccttttaaa tgttgccaaa gctcatcata tatttggaaa ctagaagata
      121 tacaaaggtg ttgaagaact aactgctcag atttatcata cctttgattg actggggaaa
      181 tgactttcag ttgacatctg agccaacaag ttagctgaaa taaaattttg tttaatacct
      241 ttgcatcaat aatctaggca cagcatcatt gattgagaaa gtctgatcaa tagagtatta
      301 ctgactgcct aactgtaact ttgccagact tttttgttaa ttctgctgat gaccttcgta
      361 ccacagcttt tcaggttcac cgcctttgaa attcaatttg ctccatttgc tattatttaa
      421 ggaatttaca cattcaattg atttcattct acctgataca ataagtttag gatataaaag
      481 at
//
LOCUS       KCOD01003643             568 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 405068pyr ultra-conserved element
            locus uce-4457, sequence.
ACCESSION   KCOD01003643
VERSION     KCOD01003643.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 568)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 568)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="405068pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>568
                     /note="ultra-conserved element locus uce-4457"
BASE COUNT          166 a          101 c          106 g          195 t
ORIGIN      
        1 ctctagtata accttagctg tctggaaatg agctaattaa attttttggt gcgtctttta
       61 gagaatacat ttgcatttga cataattagt ggtaggcaga tcccactata tccaggggga
      121 atctcaagac aactgctttg ctgactatta gtgcctaatt tctgaatgtc aaatcctgca
      181 catcttaatt tctggagaat aagctcaatt gaacttgctc cccagttatg caaaaactgt
      241 tcagataaaa ccaagtggac acgaatgtaa tgaatgtggt tattaaattg tttcaattga
      301 aagaacccta ttcttatacc atcataatgg gaacaattta tccccactga tcagcctgtc
      361 tcttttttct gagctctctt tgatcttgaa gcatattgca gtggtgtgtc ctattgaaaa
      421 gcaaaactgg ggcaatttta atgcttttgt accttaccag tgctctattt tttcgttgtt
      481 taaaaatagc tgttaattat aagtgcagtt taaatgtctc aagtgaccca gaaatgcagg
      541 ttggaatgag acagattgtg tgtctcat
//
LOCUS       KCOD01003644             498 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 405177pyr ultra-conserved element
            locus uce-3702, sequence.
ACCESSION   KCOD01003644
VERSION     KCOD01003644.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 498)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 498)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..498
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="405177pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>498
                     /note="ultra-conserved element locus uce-3702"
BASE COUNT          140 a           97 c           96 g          165 t
ORIGIN      
        1 aataaatata tcttaaaatc aaaaccattt tgcattgctt aactgagtgc ataactagtc
       61 ctttgtacac atatttgtac aaagtgttgc ctgtaatttt aaagatgctt gcctcaggga
      121 ggtttcattt ttccattgaa gtccccttga tttactgtat gcaatatgtt acagcttcct
      181 tatttgctcc tttgggacag ttactgacag taaatctcta ttaaaatatt cttccatatg
      241 gttgcatgaa aattttattg cagtgagcct gaggctgaag gtcacagctg agtagctgca
      301 gttaagtatt gcagtctatg gactctgagg tacatctgtt ctgggagctg gagcaaaatt
      361 agaattttac tgtcaatagc agttctccaa aactggttcc atttgtttac catcgcaggc
      421 ccatagcaag gcaatacccg ccactacgca ttacaggccg ttgtggctgc atgatttaga
      481 tcaaaaatta cagagtct
//
LOCUS       KCOD01003645             441 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 405288pyr ultra-conserved element
            locus uce-7091, sequence.
ACCESSION   KCOD01003645
VERSION     KCOD01003645.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 441)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 441)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..441
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="405288pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>441
                     /note="ultra-conserved element locus uce-7091"
BASE COUNT          147 a           79 c           92 g          123 t
ORIGIN      
        1 tcagtttcaa tcagcagaga gcacatgtgt atatctgata aacttgtcag tgccttttta
       61 aagcaggatt ccccaatcta ttctattcaa tttttcacca tttcaagtag aatcttgata
      121 agacagagag cagctgtgta tagctagctc aggctacaac taatttgtgc agaaaaaatt
      181 aaatcaggag gtaaattatt tcatgattgc tcattcccaa tagagttggg catcattctg
      241 gagaaaatat caaataattg gtttcagacc atgtcagaca catgcaattc ccttctctaa
      301 tggctatgtg aggtaggact aggcctcagg ggtcaccaaa gaactgaaaa tagcttagtg
      361 ccaggcgcag caatagagag agagagcaca taggaaatga aaatgcaatc tataggggaa
      421 atgtgcttca cttggaattt a
//
LOCUS       KCOD01003646             447 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 405386pyr ultra-conserved element
            locus uce-406, sequence.
ACCESSION   KCOD01003646
VERSION     KCOD01003646.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 447)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 447)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..447
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="405386pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>447
                     /note="ultra-conserved element locus uce-406"
BASE COUNT          134 a          104 c           81 g          128 t
ORIGIN      
        1 tgtggcctgg aaatgcagtg agttttgaag aaaaggctcc attattctcc cattaaagcc
       61 tctgtcagtc tctccttcgc tcgctctctc cgaagacaga tcgttccctt aatcattctg
      121 gaaaagaacc ccaagctgat ataatattat aattaattaa ttcactaaaa aggtattaaa
      181 tttcttttcc cccctgtgga tattatctga attcattgac ctttagaaaa atcaccctct
      241 aattgtaacc aggttcaagt gcatttccag cctgtccctt ttacattaat aatatcttcc
      301 aggactccac tatgctgctt aaatattgta taaatttcac tgccccctcg agagaaaggc
      361 atgaaatgaa aactcggagc tgattaaagg tctgaagctg ggagatggac aaaccacagc
      421 agggccccga agggggagga atcccac
//
LOCUS       KCOD01003647             564 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 405494pyr ultra-conserved element
            locus uce-2256, sequence.
ACCESSION   KCOD01003647
VERSION     KCOD01003647.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 564)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 564)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..564
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="405494pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>564
                     /note="ultra-conserved element locus uce-2256"
BASE COUNT          177 a          120 c           94 g          173 t
ORIGIN      
        1 acagttacag taaatgctct gacacacaga accatgctga tttccagaca acactttgac
       61 gtctgctcca tcatgtaaaa acccaacttt aattcatttt aaagcctcat ttgaagattc
      121 cattttagac cctcttcctg tagatttcac ttccccagct gcttaatatg cgcattggac
      181 cctccaacac tgagccatat agatttgtct ttgtcttttg tgttaattat tagctgctgc
      241 agagctgtct ctgtgggtga acgcacacag aaacaaaggc ggtaaggttg taaaaccttt
      301 tatctctatc agggcacatt atttgataag gtgctaagct aatagcaacg catgtcaaat
      361 tgtgtttaga cagatcagtg tgctgggaat tggaggttat atttgtctct gcaaaccagc
      421 acctgcagaa gcaaagagaa attcatacta atattcacta tgtaaaccat aaagccttac
      481 aaatggctct aagataacaa acctctaatc attcatattc tcataaaata ggaaacttaa
      541 tttatctggc ctatcattta aaag
//
LOCUS       KCOD01003648             524 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 405602pyr ultra-conserved element
            locus uce-7083, sequence.
ACCESSION   KCOD01003648
VERSION     KCOD01003648.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 524)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 524)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..524
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="405602pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>524
                     /note="ultra-conserved element locus uce-7083"
BASE COUNT          119 a          146 c          148 g          111 t
ORIGIN      
        1 tgctgaagac tcagagagag tgggtttcct cgcagactgc ttttgccagt ggccagctcg
       61 caaggatact ggtcaaatag gtcccacact gccagcctca gacactcaca gcaggtgtca
      121 aggaggacga gcagagaggc tctcaggagc gcagagctgt agtacttgcc agtagcaggc
      181 tgcatgcgag tccatttgac tgtgcaatcc ttgtgctgct ttgtcctctg ctgtcgttgt
      241 caccaacaac tttcggaaag cactaatgaa caagtgcaat ttcttttctc tattgttggg
      301 ttttttgtaa agttgctcaa atgctctcag gtatggcggc cctgaacgga ggactcggcg
      361 caacaggcct gacgaacggc acggccggca cgatggacgc gctcacccag gcctactcag
      421 gaatccagca gtacgcggcc gccgcgctgc ccaccctcta cagccagagc ttgctgcagc
      481 agcagagcgc cgcgggcagc cagaaggaag gtaactaatc tgtg
//
LOCUS       KCOD01003649             306 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 405702pyr ultra-conserved element
            locus uce-1069, sequence.
ACCESSION   KCOD01003649
VERSION     KCOD01003649.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 306)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 306)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..306
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="405702pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>306
                     /note="ultra-conserved element locus uce-1069"
BASE COUNT          101 a           55 c           60 g           90 t
ORIGIN      
        1 ctgcctgggc catgcacagt agcttgtgtt ggtgtataat gaagcaccac tagacagaac
       61 agtcacttgt ggcaggtagc taagaaattt caataaagta aactctcagt attatcaaaa
      121 ttatacattt ggggctgtta gcatggccta gaaaaagatg aggacaggct catctcatta
      181 aatgagaaga aatagtggaa ttagcttgaa tctaattaca agccacacta tctaatgtaa
      241 aaacatgact gttttttcac tcccattcat tttggctagt aattagtttt ggcctctaaa
      301 atgcca
//
LOCUS       KCOD01003650             430 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 405807pyr ultra-conserved element
            locus uce-7350, sequence.
ACCESSION   KCOD01003650
VERSION     KCOD01003650.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 430)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 430)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..430
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="405807pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>430
                     /note="ultra-conserved element locus uce-7350"
BASE COUNT          142 a           82 c           74 g          132 t
ORIGIN      
        1 gtattaatgt ctggaaacca ccagctgcta actgtgtctg aaactatggg ggctgactta
       61 tgaacattaa actgaaacct gatattttta aagctttcaa ggcaatccat tttaaaagca
      121 cccaggtcag aactttatac ataagaaatg ttcatacctg gttcatttat gtccgataat
      181 aaaacaaaat cctctttaaa agtcttcagt acctagtaac agccccatga agaataaggg
      241 ggctggcagg ggaagttgtc agaaaattta atttcctttc attagctagt ctgctccaca
      301 aatcggtgct tgttaagttc aaagcagtcc tgaaagcaac atcagtttta agtcttttta
      361 cgccagtcac atctgttaat gagatttttc caaataacaa ttgtttttaa ctcaagagat
      421 aaatctagca
//
LOCUS       KCOD01003651             545 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 405912pyr ultra-conserved element
            locus uce-6294, sequence.
ACCESSION   KCOD01003651
VERSION     KCOD01003651.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 545)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 545)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..545
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="405912pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>545
                     /note="ultra-conserved element locus uce-6294"
BASE COUNT          195 a           95 c           88 g          167 t
ORIGIN      
        1 taacattaaa gaaaacatgt aattatggaa tatataatca aaaacagttg tatattttca
       61 aaaaataatt aaggttttta ataggcaata ttcagctttt gaagcaatga atatatgaag
      121 ctgtatttgt tgacctcaaa ttactttact ccagttacat tgataacatc taggtttctc
      181 aaaaacctgc tggcacaaaa tcttttcagc tttattaatg attcagatgg cagtttctga
      241 agagacaagt tcccacagag aaggagcact tgattaatga cctggaaaca cttttccttt
      301 tcagctgatt aaataaaatt gactggattt ttacattttt ataataaaat gacccgcagg
      361 gctgagatga cacagtgaaa gcagcatgtt cactcttcaa cagattttta ttttgtcact
      421 tgtaaaaatg aaagggctaa ccacccaagc agaaaaatgc actttatcac tgtccactgc
      481 cgacatgctg acaattgctg catacaaata caaaaacacg gaggaaacta ggctgtgttt
      541 acact
//
LOCUS       KCOD01003652             546 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 406016pyr ultra-conserved element
            locus uce-3767, sequence.
ACCESSION   KCOD01003652
VERSION     KCOD01003652.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 546)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 546)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..546
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="406016pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>546
                     /note="ultra-conserved element locus uce-3767"
BASE COUNT          162 a          128 c          112 g          144 t
ORIGIN      
        1 aagaatttta tttatagttt caagtatttc aggagcactg gcaggaacag gagtgttggc
       61 attttaaaat gctggtttca cttataaaat gcacaggaat gcactggggc cacatagaac
      121 atgctccaaa tccttgcatc atgaggctgt gactgtatca tcagcttctt agattggaca
      181 gatcatgaat aaaacatcaa ttaactcagc catttccact tcatggtttg cacattactg
      241 aaacaagacc tcttcaatat ccaccggttt gctgaagatg ttaaagcgtt tgtctgtggc
      301 cagcctcttg gtgacatccc tgagaaacaa ccgcagctcc cgcagggtgt tctcttcctg
      361 gtcctccatc cgctgcttct ccgcttccga cagctcccgg gcaggacacg gcagagcaag
      421 aggaagaact tccagagcac gaagagctag ggaaaaaaac aagaagtcag acaatggaaa
      481 cattaacaca gtttatgcca ctccaaattt catttttaat atgcattgtg gatctaccac
      541 aactat
//
LOCUS       KCOD01003653             595 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 406126pyr ultra-conserved element
            locus uce-1264, sequence.
ACCESSION   KCOD01003653
VERSION     KCOD01003653.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 595)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 595)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..595
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="406126pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>595
                     /note="ultra-conserved element locus uce-1264"
BASE COUNT          185 a          110 c           97 g          203 t
ORIGIN      
        1 gtaggttttc aatttttcac gtttgaactt gagatctaat taagaaatct cttggactat
       61 ttttaaataa gctaagtttc cttcacaaac aagctgctgc tgctgtttct gaggttcctg
      121 ttaaaaagta gtaatgttct atccacacat taatgattcc aaaattctcc attatgaaca
      181 atatttatca aaaacagccc actatcagat gaaagatgtg ccttatcttt tcttgtcaac
      241 taaagcatta ttcactgaaa gtttctttca tatctgtttc aggggtttca gtgtcatttt
      301 aaattgcaaa tcaatcatag atcatgcaag ccctacttct gtaggagaga ttaacgctct
      361 ggctaaaatt gtttacaaag ccatttgtaa accttctgct gatgcagatg aggcaagttt
      421 accagtttaa cattgttgat cccagagaaa gccttaagca atgacttcag agggcaaaaa
      481 aatttgttca tttatcatta ttgtcatggg ctttcgcaaa tgataacaat ttgtcttcat
      541 cctattttta gacaatgagc cacaatagag tccagaaagc cattttgcca gatgg
//
LOCUS       KCOD01003654             785 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 406238pyr ultra-conserved element
            locus uce-5459, sequence.
ACCESSION   KCOD01003654
VERSION     KCOD01003654.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 785)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 785)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..785
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="406238pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>785
                     /note="ultra-conserved element locus uce-5459"
BASE COUNT          239 a          137 c          147 g          262 t
ORIGIN      
        1 tagccagctc tgtcaactgc tggtcctggg ttttagtttc ctgaagtgtc tcatttgtcc
       61 aaagggagct ggaaaaaaat cctctttcct cccctcctca cagctgctct ttgagtaagg
      121 ccatacctaa caattattca ggaaaacatt atgttgacaa tactgtttag aaaataaaaa
      181 agggttttta aagctagaga gtaacatcgt gaccatatag cactagtgaa tgattaaaaa
      241 tttagatgac tgcctttgaa acaataaaaa gctttcgaag cttcttaatg agcagctatc
      301 agaaataaag catttaaaac ttcagaaagt gcctctgtgg aaatttcatt gtctttgatg
      361 ctgtaaaata actgcagggt ggattcattt caagttcttt ttagcatact ggtcgtttag
      421 aaatattggg agatatcttt cttagcaata tgtggggaaa acaatgtctt ggtcgctttc
      481 atttatctgc aatttgacag gagtgcagtt tattaacttg aaaagagaca gatacattat
      541 ctgaaacaca gagagtatag tgggtattgc ctccttttta taccagtggg agtccatgac
      601 actttgaact tgctcaccat taaacgcctt cctgagttgt tgaagaggcc tttaaaaagg
      661 gagcctgtgc atttatgatg taaattcgtt attttgacag tctttgaaat ctgtcatatt
      721 cacgtccaat ttaatgcacc gcaaattctt ttcttttaaa atacttttct tttaagattt
      781 caaag
//
LOCUS       KCOD01003655             575 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 406351pyr ultra-conserved element
            locus uce-2461, sequence.
ACCESSION   KCOD01003655
VERSION     KCOD01003655.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 575)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 575)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..575
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="406351pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>575
                     /note="ultra-conserved element locus uce-2461"
BASE COUNT          180 a           90 c          108 g          197 t
ORIGIN      
        1 cccctctgtt cagtgggatc agatggtaat aaattcacat aattacatac ttgttaagga
       61 ggttaaggtt attttgtttg gataacgtga ctataattta ttttgtctgc aaggtttgag
      121 tttaaacaat attaatggtt agttaatggc ctaatgagtc agctacaagc catttaggca
      181 tgcaatgaac ctttgctttt cagtgactcc tctaatgaaa gatccatatg agtgcctgtc
      241 tactgtcaca atagagatag caagagagtc atctaatcga ttgtgatggt aaatcaattg
      301 atctgtaacc ctgttttcat acagtgaaaa agatatggag gaaacatttt actgttccct
      361 tatttccagc tgaatatcta taaataaaac agacagttcc ctatttgaaa atattccctt
      421 tataactgtg attcaaaagc aggcagaatc tgattgatgt cctattttat agatgtgtcg
      481 gttacttttg tcatttcagg agatttaaag ttcttagaaa ttaaatatat gatgcagaac
      541 atcagagagg cttgcacttc actgtcatgt gtaag
//
LOCUS       KCOD01003656             839 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 406460pyr ultra-conserved element
            locus uce-6355, sequence.
ACCESSION   KCOD01003656
VERSION     KCOD01003656.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 839)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 839)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..839
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="406460pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>839
                     /note="ultra-conserved element locus uce-6355"
BASE COUNT          261 a          146 c          139 g          293 t
ORIGIN      
        1 ttatcttcca ttctgcattt aatattttta tctttattaa tagctactgc tcagtggcct
       61 taaagaattt ctccattcaa cagaaacttt tctttacaga gacttatgct aattagtacc
      121 ttgtttgtgg cttcagtgtg atttatgagc tactctgagc ccggaataac aaaatatcag
      181 gctatctcca taactgtcta ttaatttgtt tatctttcta tctgtctacc tatctgctga
      241 aatttaaaac tgtgcaataa ctttcagatc agtgacatta atgcagcatt agattaaaag
      301 aatgttactt tatacaggca taaatgtaat ttagaggcac ttagaggaag ctatatactt
      361 aacatgattc ttggccagtg aagacaggtt gatcccactc attttgggat tgctaatttg
      421 cagttaatta ggaagattga ttctgttctc tgaggcccag ccctaaatgc atttttccgg
      481 tttccgtggc accatgctag ttatcattgt caaggtgcaa gtataactga atgacacagt
      541 ccttcataaa acataatact tggggagttt ggaaaagtaa atctagtaac cttcagcaaa
      601 cactggttta ctctgtagac caaaatctag tgtcatctgc atttagaaaa actttcaaat
      661 cacattcctt tgagaaggtt tattgcaatt agcaaataga gagttgcttt aatgctcaac
      721 taaaataaca tcttttcata gtttgaagga aataaaatat tgacattttg cttaaaggaa
      781 cttgtatcct taaataaatt cagtgggcat ggcatactta agcttgtacc ttttataga
//
LOCUS       KCOD01003657             771 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 406572pyr ultra-conserved element
            locus uce-2376, sequence.
ACCESSION   KCOD01003657
VERSION     KCOD01003657.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 771)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 771)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..771
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="406572pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>771
                     /note="ultra-conserved element locus uce-2376"
BASE COUNT          229 a          155 c          134 g          253 t
ORIGIN      
        1 tgtgtgagaa agtgtaataa gcctgcattg atctatggac cttattcttt ggggaaatat
       61 gagtcacaga tgcatagttt ggagacactc ttaaaaatat tatctctcaa gtgttgtgtg
      121 aagctttaca gacttcttcc tgcaaatctt ctgtgtcact gttagaacca agtccaaaat
      181 atttacatct aaacaactta tggcatctgt caatatcagt ctgctccaaa acatttctaa
      241 gtgcaacatt taaaactgca taaacaggag tgaactagta gcagtctaaa gttgtcatca
      301 ttgacagtta tgatttatct taactctccc tagccatttg gctaaagttt taagtaaaca
      361 ctttcagtct tcctcatgtt ctctttactg ccacctccca ctaataagag atgttgccaa
      421 gaaaagcagc cagacagttc atttacctcc caaacttgcc tgaaagtagc ttgcctggtt
      481 tagacaaggg ttgaaactac tactgcacat tttcaacaga tggaacaatg cttcacaaat
      541 tatttacatt gaagttattt gctttcagga tgtgtgttta acgaatggtt agttgaatga
      601 aatattgcag ctcagacaga gaatgcaagc aattcaagca agccatttat ggtgatagat
      661 gtagctgtga tccttgattt tctacaaagc attgtagcag tttgtcctca ttcttcgcta
      721 gctccttgaa tctgacaaaa gtatggtttc tattttcacc ctcttcctcc t
//
LOCUS       KCOD01003658             623 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 406676pyr ultra-conserved element
            locus uce-4121, sequence.
ACCESSION   KCOD01003658
VERSION     KCOD01003658.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 623)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 623)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="406676pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>623
                     /note="ultra-conserved element locus uce-4121"
BASE COUNT          153 a          134 c          137 g          199 t
ORIGIN      
        1 tacatgagca tgctgctctg aacccttata caatgagaat aatgccttct tttacactca
       61 ctgtgcttat tgtgggcaac ccaagaagct ccatctgcaa accctgtcta gaacctgctt
      121 gtgtggggtt gggggagaga caaagcgttt tgcgctgcat gtcttgcttt ggagtaattc
      181 atgttgtata aggggatcta cctatgcaat ttaacttggt tcttttatta ttttctgttc
      241 ttaaactgca cccaagatgc ctttgcagct tctcctgggg aagcccctgc agcagctgaa
      301 ggggcagcag caccagctac cccaacccct gtagcagcag ctcttgatgc atgttcagga
      361 aatggtgggt tttatgtcat tagatagtct ctaaactaca tggcagtgtg gaaaatttcg
      421 tggtgttggc aattaaaaac aaaccttaga ctgaagagca tgcttaacaa aactgcctgt
      481 ttccaagtcc cagtgacttt gtgtttattt ggtagtgcta atgaatgtca gtgctgagtt
      541 gtaacttttg ccatattttt tggcctcgtc aaaagccttt gaaagttctc ccctctagta
      601 actagtttca gacagtcttt att
//
LOCUS       KCOD01003659             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 406786pyr ultra-conserved element
            locus uce-3054, sequence.
ACCESSION   KCOD01003659
VERSION     KCOD01003659.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="406786pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-3054"
BASE COUNT          195 a          131 c          122 g          192 t
ORIGIN      
        1 cacaatacaa aacccgcata tatatctgat gtattttata catattcatc ctcataactt
       61 gacagatggg aggaatcttg cagtcatttc tgaaagcaga caaaaggccg ttggttctgc
      121 tccacatgat gatttgtgaa gacagaatat cacccgcttc cgttgatgat tatatagttc
      181 tatccatctg tctgccactg gaggttgtga gagtgagata cagctcacac cgtcttcata
      241 aacaaaagta gactgtgctg tcagtagtca gacacgccaa ctaattggag ctgtcgacag
      301 acacaatatt ctgtgtcaac agctctggta acagtttgaa acagcaatga tatgttgggt
      361 gatggtgagg atgacacata tgtctctaat agcatgctag aaatctgaca taactagaaa
      421 agaattacta aaatgtaatt cccagcctct agttctgctg ttcagacttc ccagtcagca
      481 cagagaggaa agagatgtgt tcgtgttctt gtgcttgtac ttgtacacat cttcttctgt
      541 atcacttcat atgctgacag cttaatttga tgctcataat gactaacact aagctttctg
      601 ctgaatttca aggaattcat caaaattcct acacaaattt
//
LOCUS       KCOD01003660             703 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 406896pyr ultra-conserved element
            locus uce-4870, sequence.
ACCESSION   KCOD01003660
VERSION     KCOD01003660.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 703)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 703)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..703
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="406896pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>703
                     /note="ultra-conserved element locus uce-4870"
BASE COUNT          212 a          127 c          135 g          229 t
ORIGIN      
        1 aagtatgtct gcagcagagt attgagacct ttctaatttc tttcaaaatg tgtttcaaac
       61 ttggtatctg ccataattga aaggataaat tttgccaaca ttatgaacat atccatttgg
      121 aaagtcaaaa caagtatgat ttagatctgg tttttgtcat agataaatag ttctttttgt
      181 agcgagccct ggagtactta gagcaaccca gcaaagtcca atgaagtgtc aactcaagcc
      241 aggaacatta ttatttattg tcagttagga ccttcatcac ttacagacat cactggaaat
      301 attactggtg attgatactg atggcaatga tgattactct tgcaataagc ttaattaaaa
      361 taatgaagta ctgttgcaca gaacttggtt gttgcccagg caggataatg tataagcagc
      421 acaaggaagt catcagctca gagtgcttca tatttcaagt gtgacattgc tagggaagca
      481 aaaaggcatt gtgtgccatt tctccactat ttctgctcca tctcctatgt gtatgcatat
      541 acaaataatt gctggaatag acactgcaga gtttgccttt cagatattaa tcctgactct
      601 ctcccttaat gaagcataga ttggtcatag tgggggtatt gctgctttta taagatgctg
      661 caagtctctg agaatttttc ccattattct tcacagagct ctt
//
LOCUS       KCOD01003661             606 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 407004pyr ultra-conserved element
            locus uce-5205, sequence.
ACCESSION   KCOD01003661
VERSION     KCOD01003661.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 606)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 606)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..606
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="407004pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>606
                     /note="ultra-conserved element locus uce-5205"
BASE COUNT          148 a          146 c          134 g          178 t
ORIGIN      
        1 catttctctt tccactcttt ccttggcata atctttctta tcagcagcca ttcatgatgc
       61 tgaagcttat atctgtactt tttctttcat gcttgcaggc atggatctct tctccaattg
      121 cacagaggaa tgtaaagcac tgggccactc agatcggtgc tggatgcctt cctttgttcc
      181 atccgatgga cgccaagctg cagattaccg cagcaatctg cacgtacctg gcatggactc
      241 cgttccagac actgaagtgt ttgaaacacc agaagcccag cccggggcag aaaggtcctt
      301 ctccaccttc ggcaaagaga aggcccttca caacagtctg gaaaggaagg agttcgatgg
      361 actgctgtct aatacacgag cgccttacaa accaccatat ttgagtaagt actattctgt
      421 tccctcggcg ggattttcat gctaaatggc ttctcttgga ttcaggcaac agtgaagaag
      481 gcattgttca gtgccaaaat cttcattggt gtgacatcat tgtcaacaac aaaagtgtca
      541 gctaggggag ttgctcattt tgttttctga tgctggctta ttcttggata gatggtttaa
      601 acattg
//
LOCUS       KCOD01003662             251 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 407107pyr ultra-conserved element
            locus uce-7917, sequence.
ACCESSION   KCOD01003662
VERSION     KCOD01003662.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 251)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 251)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..251
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="407107pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>251
                     /note="ultra-conserved element locus uce-7917"
BASE COUNT           43 a           59 c           80 g           69 t
ORIGIN      
        1 gggggcggcg gcgggcgcgg ccgcggagag ctgccagtca ggccctgatt tattattcat
       61 ttgtgttata ggtggggtgt gcagacagtt actgtaataa ttacccggac tggagcgttt
      121 ccttggcaac cctccattca tgctgttgcg gagagtacgc ctgtaaagca tgacattgct
      181 gtattcgggg gtttgttgcc ctcccgctgc tccgggtttg aggttagtta cagcatcaca
      241 aggtgctctc g
//
LOCUS       KCOD01003663             384 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 407213pyr ultra-conserved element
            locus uce-6786, sequence.
ACCESSION   KCOD01003663
VERSION     KCOD01003663.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 384)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 384)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..384
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="407213pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>384
                     /note="ultra-conserved element locus uce-6786"
BASE COUNT          104 a           85 c           83 g          112 t
ORIGIN      
        1 gcatataaga acaaaaggaa gagaggcctt tgatcctaag ggtttccttt ccaccaagca
       61 gtaggaaaat tacctgtgat gtgaagtcat gctgttgtag ctgtctccct tctctcaagt
      121 cccaggatct gacagtgtta tccaaacctc ctgtccagag cttggtacca tcattagaaa
      181 tgtcaataca gctggctcca tctgtgtggc cctggaattg cctgataaaa caaaccagat
      241 tgaataatga tttcctgcca gagctcaagg taaacactgt tgtggtgtta gttttggact
      301 ctcatctctt ctgtgtctgc tgatgagcaa gaatccaggt gctagaattg catcatggct
      361 agctgaataa agtctttcct atca
//
LOCUS       KCOD01003664             626 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 407320pyr ultra-conserved element
            locus uce-6454, sequence.
ACCESSION   KCOD01003664
VERSION     KCOD01003664.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 626)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 626)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..626
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="407320pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>626
                     /note="ultra-conserved element locus uce-6454"
BASE COUNT          162 a          147 c          137 g          180 t
ORIGIN      
        1 tcttttctta cagggagaaa aggtaagttc tccttagtat ttggtttgca gcctatggct
       61 agttcttatc ccctcccctc ccgtttgatt ttctgctctg atatttgatc aactaacatc
      121 cctaaaccag gaacatcaga tctacatgcc attgttaaaa ggccttgcaa tggaagactc
      181 acaaagtaca ttggtgcaac agagtcacta agggtttcct ccctcttctt tctcttgtct
      241 cacaggtctg cccagccgct tccccctgcg gtgagtaacg ccagcagcct ctgctcgctt
      301 tgagacattt agagtctgaa tcgttctttt aatttaaggt accccagagt tcatggcccc
      361 cgagatgtat gaggagaaat atgatgaatc cgttgatgta tatgcttttg ggatgtgtat
      421 gctagagatg gccacgtctg aatatcctta ttccgagtgc caaaatgctg cgcagatcta
      481 ccgtcgagtg accagtgtaa gcctcactac cgagtctaaa gctactactg ttagcagcaa
      541 aggagcacca gtgcagctga gaagagttac agagtggttg aactcacaga acatctgtca
      601 gaagcttgta aaatatgtga atggaa
//
LOCUS       KCOD01003665             501 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 407427pyr ultra-conserved element
            locus uce-4862, sequence.
ACCESSION   KCOD01003665
VERSION     KCOD01003665.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 501)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 501)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..501
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="407427pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>501
                     /note="ultra-conserved element locus uce-4862"
BASE COUNT          161 a           88 c           87 g          165 t
ORIGIN      
        1 aaaaatttga aaaatccaaa gttcatgtat ttccccaatt ttttttaaaa aaatctctac
       61 agacagagag aatttgcaat gtatctgcat agatcagatc tctcgctttt ccatgcacct
      121 ccttaaaaac ctgtaggaac aaaattttcc ctctgcacaa aagctgctcc ctggatcaga
      181 ttttgtactt gctgggtatt tctttggctg atgtcgtagg tcccttggta atatagaagt
      241 tttgaaaatt aagcatcagc actgagaact gggaggacaa tagatagagg agcttcatcc
      301 caggagacaa ggaataaata ttgtatcttc gcctaataag gaactgtagg ttctttcaac
      361 atttttatac attttttcct ccactcttta gaatgcttac ccaggctaat atgggaacta
      421 atctgatcga agggggtatt ttgtgtacat tttattggga agacataaag ctaatatata
      481 taatatatat tattaaatca t
//
LOCUS       KCOD01003666             784 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 407539pyr ultra-conserved element
            locus uce-11, sequence.
ACCESSION   KCOD01003666
VERSION     KCOD01003666.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 784)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 784)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..784
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="407539pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>784
                     /note="ultra-conserved element locus uce-11"
BASE COUNT          221 a          160 c          139 g          264 t
ORIGIN      
        1 aataaactat acttgagaat gcatttactc tcttctgtgg acacagatac acttttcttt
       61 ggcattatgt cactcttctg ccaaactgta ttttaaaatt taatgagaag ctaaaggatg
      121 ttattaattg cttttcactt atccattagg ctgcattttc atcttttaca agacattcaa
      181 aaggttgtag ccaccctgat tcacaagggg attttacatg tgcctcagat agggacaaat
      241 aaacagctga attctctaaa tatcactcca cacaactttc tcttgccact agttaggcct
      301 taatacactt agaaggttgc tcttctaatt tgaactgtgt gaaactttgg ctggaggcta
      361 cttctgtgtc ccagtgataa aagaagacat aaaacaaccc agtgcctgat catgctccct
      421 ggctgtcagt gaatcatgtt taatagtatc tccattgcag ttttggccaa tttgcttgca
      481 atggcatcct tttccatggg cttgctgctc agcaggccct gaagcaatct atgaataact
      541 tcccaacaga tgctgtttat gaattgaagc aaatggcttc cctgtttctc ttttttctca
      601 cttcaataat tttcagttac attacgatga atatttatag tcctatagca gtgcataaaa
      661 atgggaacaa gcagacctgt gcattgtttc atacgtgagt gctgttctaa tggcttttgc
      721 ctcaatggtt ttaatgttct gctgatagac tgaaaagaga atgcaaactg tagatcagtc
      781 actt
//
LOCUS       KCOD01003667             737 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 407649pyr ultra-conserved element
            locus uce-2357, sequence.
ACCESSION   KCOD01003667
VERSION     KCOD01003667.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 737)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 737)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..737
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="407649pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>737
                     /note="ultra-conserved element locus uce-2357"
BASE COUNT          215 a          159 c          151 g          212 t
ORIGIN      
        1 tagtcagtga aagggctttt catcccaaag gtgccatagt ttgggaggca tctcccttcc
       61 accctgtccc attccagctc ccaagcactt tcctttcatg aatataatga tcatcaactt
      121 atttttccac taaggagggg gaatttaaac tgcctgcctg acagtgcttt caaatggtga
      181 tgaaatgtct tcttcgtatc tgaagagaac atgattatta gcactgaatc tgacagacac
      241 gatttctgaa tatttttgtg gcattaattt aaatcaatgt aatgtttgaa aacatttcag
      301 cccctcaaac agctgatgca gcttagattc aattataaca aattgcaaca cactgtcaag
      361 tctttttacc aagtcattag tcagggattt tgaatgcacg gcctccgaac ggagttcgac
      421 tggctgacag ctctaattgt tgggaaccgc taaaggattg ctaatgaact gggggatctg
      481 ttgggcctgt agctttcttc aaggatgaaa tttttgaaaa ctttcacaag atcaaagcgg
      541 cataacatgg accatttgct aaattgtcag cagtggagtg aagcagtctg agtcccagct
      601 ttaaagctca agcttcagta gaaaacacca tgtgcctcct gcccctgagc ttttttcatg
      661 tgtcagtaaa accgtagtga gaaacaacga catgaagaaa gagccccaga accaccatgg
      721 ctgctatggc ttaatta
//
LOCUS       KCOD01003668             686 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 407740pyr ultra-conserved element
            locus uce-4425, sequence.
ACCESSION   KCOD01003668
VERSION     KCOD01003668.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 686)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="407740pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>686
                     /note="ultra-conserved element locus uce-4425"
BASE COUNT          175 a          158 c          139 g          214 t
ORIGIN      
        1 ctggtggcat ttattgcagg agcagaaagt gcttgcctca tcagggagca gctggagaca
       61 gagaggcttt caaaggcatg tgactgacct ctacctcggc tgccgggggc cggggattgc
      121 cgactcagtg gaatctctct ctgcctcccg ttcctttctg cagtgtcctg accttgtgag
      181 gccttggtct cccccctatc catctcccac cgttcagtct ctcctgtgaa ctcatgctgg
      241 gagattaatt gccactatcg cccctaatcc atcacacttc ccaaagattg ttttgacatc
      301 tagttaattt ttggctgatg atttatcaaa ttcttattac cgtgctctga aggggctcat
      361 ttattgtgtt gattcatggt aatgataaag gggaaccttt tgaattttaa ctacattccc
      421 tcatgttctt cccagcacag ctaaagagga aaaatatagc tggggactct taattcagaa
      481 agtaaaaggg gaccctctat cctccattat ttgtttgaga gccaaaagtc ctaaaagagg
      541 ttaatatata ttaagacata tttttagagt tctggtctgg actgtgtttc aagagcatcc
      601 ccccaaggct ctttaaaaca tttattgccc tgtaatatta cctaaatgtc tactaccatt
      661 ttattcaaat agaagttaat gctaaa
//
LOCUS       KCOD01003669             508 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 407832pyr ultra-conserved element
            locus uce-4888, sequence.
ACCESSION   KCOD01003669
VERSION     KCOD01003669.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 508)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 508)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..508
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="407832pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>508
                     /note="ultra-conserved element locus uce-4888"
BASE COUNT          148 a           98 c           92 g          170 t
ORIGIN      
        1 tcctattaac agcactatga ataataatca gtttactttc tggcttgtat ctaaatatac
       61 tttctatatg atttcatctt ttattcagct gtttaaaagc agaacatcta attacagttc
      121 atattagtct acattaattg ccacagagca tgtgtgatga ctgattttct aaaaacagac
      181 agaatttttt agcatatgga aaaatcatgt tattattaat acatccccac atgactctac
      241 atttcaattc ccttaattat ttagtcattg ctgattatgt cttttcacaa ttcattatcc
      301 catttcctgc aacgtgggca ttttattcat taagtgtcaa aacgaagagc ctgacctcca
      361 ggaagataat caggaaataa gtggcagaca taaaaggtct gggtttccct taagtgctca
      421 cttatttcgg taactgtgcc atgttttcag tcagcggtga cagaagcgga gcgctgttgg
      481 tggctgcgga agggcgcagc gctgccgg
//
LOCUS       KCOD01003670             469 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 407938pyr ultra-conserved element
            locus uce-5840, sequence.
ACCESSION   KCOD01003670
VERSION     KCOD01003670.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 469)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 469)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..469
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="407938pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>469
                     /note="ultra-conserved element locus uce-5840"
BASE COUNT          144 a           89 c           86 g          150 t
ORIGIN      
        1 acctgccctt cttgtcctta agcaggtact gcagtcttat gtaaatcagt aagattgatg
       61 ctgttgtatt ggtcagcatg taaaataacc tgtcatcagt acagaacgtg atgtgcagaa
      121 tatcagtgta acttgaaatt catagcattt taacacctgt ttccatagct acagtgtaat
      181 ctagacatct gagaagccag cctgcctttg ccagccctgt catttcaagg gaaataaatt
      241 aaggaagctg atcacaagcc tggattatac agcttcttta aagtatagca accagatctg
      301 aaaactaacc aggaatgaac atcattggga cagaatggat taacctttgt aggaaaactt
      361 gaatctcctc tatatttact tttctcgagc aatattgtat gttatacctg gcagttatat
      421 ttgcaggacc atatttcttg atttttgaga agttgtacca tattcttaa
//
LOCUS       KCOD01003671             587 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 408044pyr ultra-conserved element
            locus uce-4704, sequence.
ACCESSION   KCOD01003671
VERSION     KCOD01003671.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 587)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 587)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..587
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="408044pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>587
                     /note="ultra-conserved element locus uce-4704"
BASE COUNT          160 a          127 c          120 g          180 t
ORIGIN      
        1 tccagtaata gttcatattt catggggact tagttttcat gaaatcatct cggtgtcatc
       61 tttcatacat aatacaatat cagttcatta aaattctcaa tgcagcactg aacttggtca
      121 gactgaaatg gggctgacaa acctcatgtc tgatgatgaa ggtgaaacta gttttcagta
      181 tctgttctgt tcacttgatt gattccatct caggcttcat gtttcctgca tggcctgcca
      241 ctgtcatgca aacatgacct gataacacat tgtcaggagc actccagaga gcttacaaca
      301 atctaaaagg agtgtgaaat tccatctgaa atgtgcatat ttgataagca tctgtccctt
      361 tcattctcag aaagttaatc ttctgtgctc cactgaatct tgaaaacgag atggctcatg
      421 tgcatcaggt ggcccaatat cactggggac agacaggttt cctctctcat ccctggacag
      481 cagcatgaat gggagtctgt tgtgctggtc agtccctttc aaggagatgg acttccagat
      541 atcaggataa aaatgctctt gaattcagac tgtctggtcc tcaggtt
//
LOCUS       KCOD01003672             638 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 408153pyr ultra-conserved element
            locus uce-2762, sequence.
ACCESSION   KCOD01003672
VERSION     KCOD01003672.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 638)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 638)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..638
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="408153pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>638
                     /note="ultra-conserved element locus uce-2762"
BASE COUNT          200 a          113 c          120 g          205 t
ORIGIN      
        1 gggtcctgct ggcctctgtg tttaaaggaa cattattcct ttttaagtac aaggcaccca
       61 gtttcttcag cagaaaaagg tcttgccacc ccatttcaga tgcaaagtta ctgcaagcac
      121 tgtagcagga gccttgctca gggtttttag tgtatagttt atggatttaa tttctttttg
      181 gaaataaaag ataacttcca aagaaatgac atgagtgtgt aatctccttt tgcagtgatt
      241 tttctttgat tgatgtgcca ttaatacttt aattggtaac aggtgcagtt gattgttggt
      301 tcctaagctg aaaaatctga aattgaacat aaggctctga taaattaata aactcctctt
      361 ctccaaacag ttgttgctat gaaggaacta actttccatg aagcgctgct ccatcaagca
      421 cactgaatac tttatgttaa aaagcaaaat gttacttaat gataaattaa aattacacta
      481 gcaggcaaag ataaaacata ataatgacac ccccttaagg aaaagaagtc actggaaagc
      541 actgtgaaag ttatcttgtg aaatgtgttg tttctgttgg tgcatcaggg tggccatttg
      601 gattccctat cacattatta aagacatctc tatccatg
//
LOCUS       KCOD01003673             555 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 408261pyr ultra-conserved element
            locus uce-7557, sequence.
ACCESSION   KCOD01003673
VERSION     KCOD01003673.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 555)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 555)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..555
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="408261pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>555
                     /note="ultra-conserved element locus uce-7557"
BASE COUNT          181 a          101 c           79 g          194 t
ORIGIN      
        1 gtttctactt tattgtttcc ttttatgtta gtctgtttat ttctatgagg tattttcttc
       61 ttaaccacat tatattgaaa tgccaactag tactagggag ctttccatat tcttttgaaa
      121 cttagaaata gcgtggctct tacatgatac tttcataatg ttgccaatcc tctgataagt
      181 ggttcacatc agatatttag ccccaatacc tactgcttga gaatctacac tgattctctt
      241 cacgttttgc ctctgcattt caagatttat gaatattaag ttgtgcttgc cccaaagcaa
      301 aagtatactc actaagatat ttgctgagat caggagtctc ttttttaaaa caaaggcact
      361 aataaggaag cactataaaa tgtacgacat tgaaaaaata aggaaaattc agtattttta
      421 ataaagtgag aaatctctag ttcaaagcac cctatctgag ctaccctaaa taatgcaaaa
      481 gagtaacaat ttatggaact atttctgcca agaatatacc ctgatttcta aaactatgac
      541 cattattttt aaaac
//
LOCUS       KCOD01003674             727 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 408368pyr ultra-conserved element
            locus uce-7595, sequence.
ACCESSION   KCOD01003674
VERSION     KCOD01003674.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 727)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 727)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..727
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="408368pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>727
                     /note="ultra-conserved element locus uce-7595"
BASE COUNT          220 a          148 c          142 g          217 t
ORIGIN      
        1 ctaagaatgc ccctgaagga actcgggctt ccttgtgccc atctttagat atgaaaacct
       61 tctgtatggt ccaccgtttt ttgagtcttg tagtccacaa gtagctcagg aaacgaggca
      121 ttgttgatcc aattagataa taggagtact ttgttctcat tattctgatg agagggtaca
      181 catttgctct ttgagcttct tgatggtaaa cggtgctaat gaggcctgat ggattccctg
      241 ctcctaacaa gcctctcagc agtgcaagtg attacaatgg agatagattt gatgggatgc
      301 actccctttt gtagtgtctc agctgctgac actctgcgac ataatcaggt cacagagccg
      361 gtcacagcca tcagcaaaag ccatagctct attcctcatt attaaagtgc attattcagt
      421 tccaggcctt cacaatactg ccaaaggccg ttaagcatca gttctcaaat acaagagtta
      481 ataaaatcat cagctaaaga actagtaaat taaagaaatg gaaataaagt gctccctttc
      541 aaattcattg aaggatcaca attaaataag cagggaattt ctcatcacca cacactgtac
      601 tagtatgtca tgtgcaataa caaaaaaaat aacattgtcc tcattttgga ctggcttgga
      661 aagtgctaaa gtatctctta tggtgaagga aatttcggtc ttctcaaatt gtaggtacta
      721 ttatttt
//
LOCUS       KCOD01003675             361 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 408476pyr ultra-conserved element
            locus uce-2464, sequence.
ACCESSION   KCOD01003675
VERSION     KCOD01003675.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 361)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 361)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..361
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="408476pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>361
                     /note="ultra-conserved element locus uce-2464"
BASE COUNT          124 a           67 c           70 g          100 t
ORIGIN      
        1 aatgaaggaa aaggaagggg gtagaaaaga aaatcccaaa gatcctcgga taataagcac
       61 cattaaggtt agtctgtctc atgattgttt cttattaaaa agagactgta ctttatctgt
      121 gcaggatatg ctgtttggat gagggaatta gcagagtgac tgcctccata tcatctaatt
      181 agcaaaaatg ttgataagca gatacaatca catatgatta ggatcctttt aaaaagccac
      241 tccattaatt aaatagacag aaaggccgcc tccagccctc gcgtgccact gattagaata
      301 caaatattta cactaatctc acctccatca gccatgggac acttttgagt atttttagtg
      361 a
//
LOCUS       KCOD01003676             531 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 408678pyr ultra-conserved element
            locus uce-5987, sequence.
ACCESSION   KCOD01003676
VERSION     KCOD01003676.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 531)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 531)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..531
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="408678pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>531
                     /note="ultra-conserved element locus uce-5987"
BASE COUNT          169 a           81 c           99 g          182 t
ORIGIN      
        1 ttcatttcat actaaaatca cccaggctaa agaggttaat accaattata aactcacagc
       61 tcattatata cttctcagac taatacagat acaacatgat ttaagattgg aaactgtggc
      121 taaaggaatt agttgtcttg gcatgaaact cggtttattt aatcaatgct gtttccacta
      181 gaaaagtgga ttagtttttc tttaagacag agttaaaagt tttgcagcta atttatttta
      241 ataagcattc agtcactggt tgctgcagaa aaaggctaaa ctgtaatgaa gagccaggaa
      301 agaaagcatg acttaattat ttttctgggg tggataatga ataaattagc tacgctgtag
      361 gcttgctgtt tctatagaat ttattacttt tgctttaaga accatatcat gacaaagtca
      421 atttttctcc tgactgcaaa ctgattgatg gggtaatgtc tggttgtgaa agacttcctc
      481 ttcatcattg tgttgccaac gttggtatca taaagtgagt ttgaagtttt c
//
LOCUS       KCOD01003677             479 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 408781pyr ultra-conserved element
            locus uce-6060, sequence.
ACCESSION   KCOD01003677
VERSION     KCOD01003677.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 479)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 479)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..479
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="408781pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>479
                     /note="ultra-conserved element locus uce-6060"
BASE COUNT          144 a          108 c           77 g          150 t
ORIGIN      
        1 ctctgaaggt actgtatctt cattagaaaa tacagataac aattccacaa caatctcaga
       61 ctgaaataga aatactccca agtgacatac tctcctgtgc agatacagtg ctttccagtg
      121 caacctctac tatgctaaat ctcctcagtg atccatcttc ctcatcatgc tgacttctct
      181 cctctgtctg ttcagcagtg ggagacattt agcgaacgct cttcaagctc acaaactctg
      241 acccaatttg attctaacat tgcaccagct gatcctgtaa gtcaatcact tagcttgctt
      301 gtttgaaatt aattttatta acactgaatt tccagtattt agctgttatg catgattcca
      361 tggactgcgg aatggtggca ggttattttc ggaaattttc tagattgcaa agaatgattt
      421 tgacctaata caacactctg tcatacacaa agaatttaaa tgtaaatcaa tgcaagggc
//
LOCUS       KCOD01003678             637 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 408889pyr ultra-conserved element
            locus uce-1345, sequence.
ACCESSION   KCOD01003678
VERSION     KCOD01003678.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 637)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 637)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..637
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="408889pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>637
                     /note="ultra-conserved element locus uce-1345"
BASE COUNT          215 a          109 c           94 g          219 t
ORIGIN      
        1 tataatttct aaaaaagcac aagtccatgt agctgtttat aaaactctta tttaatggaa
       61 atctttatcc cctgaactag aatccaatat aatttgccat taatttattg aatctgattt
      121 tggacaatgc ttctgtagtg tagatgcacg tcccagtatc ttatttttat gtataaagaa
      181 agcaaacaat gaaatctgaa aaacagttga gattatgctt gcataaactc taatttgcac
      241 agttcacagc tactccttgt gcagtaattg ctttatgcgg ctgtaatcga taacctgtga
      301 agacagcaca tcatctaaac cccattccaa ataatatttc tgtgtagtgt tagctgtgaa
      361 tttaccttgt acagctctat ctctataaat ataattccat gtattaatag tcacagaaag
      421 gctgtaagtg agcaactatt tttatgaaac gcaccactat ggataaatta acttttacag
      481 aaatcttgtt tactgtatga tattctaaac cactgtcaaa taaaatatat atccaaaaat
      541 ctttctcaat tgtatatagt tggtgttaat tttgagtaac aggcttcagt taccctgaga
      601 aacaatcatg catatgagta gagtgatact gccttat
//
LOCUS       KCOD01003679             506 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 409000pyr ultra-conserved element
            locus uce-4071, sequence.
ACCESSION   KCOD01003679
VERSION     KCOD01003679.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 506)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 506)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..506
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="409000pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>506
                     /note="ultra-conserved element locus uce-4071"
BASE COUNT          130 a          111 c           96 g          169 t
ORIGIN      
        1 tcccaactct gtctcctaag ccatgttttc tcctggagtt cttttgccag cccaaagcag
       61 aggtcacatc aacatgacct ctttgctggt ataggaggct gctaaataat tcacgtggcc
      121 agggtccaca tttgtttttt ccactctcct aatcaagatg ctcatttaat tctattccag
      181 cacctgttca gcaattaaca ccctacaatt tgcatcttac cctgacattt gctatctttc
      241 caattagttt ttatatcagt ataattaggt agggttatta cagtgcatca agcagggtcg
      301 aggatattcc caagccttta agctctttcc cagatttgtt tagggaagcc actaagggta
      361 aacggttgat taggatcact gtttttcttc ttcattcaga tcaggaaact gtttccccat
      421 gtggcccatg aaagatcagg gaaatatgtc agtctgtaag aactaatatt atgtagttca
      481 tgactttttg ggtgaattta cagggg
//
LOCUS       KCOD01003680             732 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 409112pyr ultra-conserved element
            locus uce-3873, sequence.
ACCESSION   KCOD01003680
VERSION     KCOD01003680.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 732)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 732)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..732
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="409112pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>732
                     /note="ultra-conserved element locus uce-3873"
BASE COUNT          231 a          123 c          144 g          234 t
ORIGIN      
        1 tatggagcac gtcaacagag ggcttttggg tgcatacaca ttttttgata taacaggaca
       61 ggagctttta taatcattag tacccgtgtt taccacttgc ttgctttcca gtctgcatgg
      121 tattataatt tgaaaagatg atgttaccag ggtaatgaac aataaaaaaa ttgcaattca
      181 tcctaataag cttgaatggt aacccacatg ccttggacat ttctagccag gcatatttta
      241 tccacatctt tggctgtgaa acagtgtgga tcttcttaac tgagtccctg acagatggtt
      301 taagcttttt caggactaca tttccaatca ctttgcccat attgcaaaat tggccttgaa
      361 aaagggtaaa gagttgttat gctgcattaa catctcttct gaattgcttg ctgtgaagga
      421 catgaaaaag aaggaaatca gaagagcaat gttttaaaaa tatgcgttac aaatgttaga
      481 taggatgatg atcttaattt atatccctca cctcaattat aatgtgaatg tggtgataat
      541 gaaaacaaat gattcagatg gcattcatgg tataagaagt attaaaagtg ctgtaattag
      601 aaagacttct tacagtctca aaccctgctg atggacagca caatggactg ctattagatg
      661 aactgggatt tctgtgtttt ttctactctg agtggaaagg ctcaaatatc tgcattcatt
      721 tctgcatgaa ac
//
LOCUS       KCOD01003681             599 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 409221pyr ultra-conserved element
            locus uce-6652, sequence.
ACCESSION   KCOD01003681
VERSION     KCOD01003681.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 599)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 599)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..599
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="409221pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>599
                     /note="ultra-conserved element locus uce-6652"
BASE COUNT          198 a           98 c          122 g          181 t
ORIGIN      
        1 ggagaacaga atctctcttt catctggttt aattaccccg acaggatacc aggccagatg
       61 agatggaggt tcactgtact ctacgcattt ctgataaatg ggaaaagaat agatgacctg
      121 gcagaaggct cagacaataa catgtgattt acaggacatg aatgcagcta ctataagatt
      181 tatctgacag ccctctccga tagtggactg ttgagtatcc gatggaatga tttctagtct
      241 ggaaagtctg ctactgagta gccatacaca ttatttattt attagatgtt ttgggttgaa
      301 accattttta aatgatgcac ttcacaatgc tcagccataa atttagtttt aaaccctaga
      361 agggaggtag tgttattgga atgtgtgtca gactgaatta ggatgagcaa cacaacgctt
      421 ttataaagtg gccttgaatg caacgtcgat tccttcaaaa atgatattaa tgtcaaataa
      481 gcaggaacac tttgcagtaa tattaaatga aggattcttt atgttttgat agatttatag
      541 aaatataaaa gagacaagtc tcaaaatgta gcgtgtctat cacaaaacac aactgtttt
//
LOCUS       KCOD01003682             724 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 409331pyr ultra-conserved element
            locus uce-4531, sequence.
ACCESSION   KCOD01003682
VERSION     KCOD01003682.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 724)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 724)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..724
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="409331pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>724
                     /note="ultra-conserved element locus uce-4531"
BASE COUNT          192 a          153 c          173 g          206 t
ORIGIN      
        1 gggcgcgcct tgcctgcagc cggagccatt catcccccgc ccctttgttc gccctgagag
       61 taacgctgtg aattaaaaga aatgacaata tttcgtatct gctcgcccgg ccaggagaag
      121 ggcccttgag cctggcaaaa atcaggcgga tcattcatcg tgccaccccg cacctgtggg
      181 cttggcattg aaaaccccgc ggacctcttc ctattcaact taattattcc cccaaggcgc
      241 acaatggttg aaatggagca ggttggagtc tgtttattgg tcgtaaatgt ttttctgaag
      301 atcttctgaa tctcattgtt agctcgttgt ttgaggctgc cctctttctt tcagacgaga
      361 gtagccttgg acttttcaat tttcaatcgt aacatctgct taatcgtacg gatcaaaata
      421 tggagacaca aaacatatgt aatggttgat ttgttaaatc ctggtaatga gttattaaca
      481 agggaaaaca atagggcagg atggtgagag ccttatggta acagagtcac tttatgtaac
      541 gcctgacgtt tcccttcttg ataaatggaa ctaaggtctg agcgccaggt gatagcaaga
      601 aaatcaatgt ctttaggggc cggcaccgag actttttttc tatgtgaaaa attaggagac
      661 ataaaattta attggctgat caggggaaag cagtggtctt aagtttaatt gccagtaggc
      721 ttag
//
LOCUS       KCOD01003683             593 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 409444pyr ultra-conserved element
            locus uce-4353, sequence.
ACCESSION   KCOD01003683
VERSION     KCOD01003683.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 593)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="409444pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>593
                     /note="ultra-conserved element locus uce-4353"
BASE COUNT          176 a          136 c          123 g          158 t
ORIGIN      
        1 cctaattcaa gattggctag atagccaaat ggctgcaaac tgccatagct tgaagtttac
       61 gtaaatacag ggctgaagca ttgaggcccc taaattacca cctatgttgc aatgaactgt
      121 cttctacaat gttctgacct acaactttga ttaagacagt gtgtttcata caacacttcc
      181 aggggaacat gcaattataa tacttactag atgagaaccg tctttaactt cttgtacttg
      241 ctgcacctgc ggttcagcca caactttagt gtcctgatca gaagtcatga gctgtctgct
      301 ttttggctgc tcagagagaa ctttactggt cacctttgta agctgtggaa acaggaagac
      361 aaaagatcta agtggttgct gaaattccca agaacccgca gtcactctac cctgattcag
      421 accaaaggcc taaagaactt ccacacaata cagtcgggat tatgcatcca gagaaaacag
      481 cagatgaaga taaactcagc cgccggtcac tggttgcctt gggattacag atgaacactt
      541 gccacagcac tgggcaggga aattccattg ggaaagtttc ttttgattct cac
//
LOCUS       KCOD01003684             669 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 409552pyr ultra-conserved element
            locus uce-6882, sequence.
ACCESSION   KCOD01003684
VERSION     KCOD01003684.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 669)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 669)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..669
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="409552pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>669
                     /note="ultra-conserved element locus uce-6882"
BASE COUNT          203 a          103 c          150 g          213 t
ORIGIN      
        1 ttagtaacgg gtctgttaat tttccttgtg tttcttttat gcagcctctt taaaagcatg
       61 ggcagtttgt actaagttgg tgcagggtat ccagacagaa ctgaaaggac agattctaat
      121 gtcagcaaaa ctgatttgaa agaagtattg attccatgtt gtattttata tctgaagcag
      181 ccaatggcaa atgttgtcaa aatggaatca gatgtttgta acttaatact taagaaaaat
      241 gatgagtgca tgtttttgac tttaagtatt ctctatgctg cctggcttaa gacataaact
      301 gatgtaaaaa taaatgactg cctgcataat ttatgtaatg tcttgctccc tgatcctgtt
      361 tgtattgatt tttctaaaag gcttttgtgg ccacaggaac caatctgtct ctccagtttt
      421 ttccggccag ctggcagggg gagcagcgac agacaccgac ccgggaatat gtcgactttg
      481 aaagagaagg aggcaaggta aggaggaaat tgttgaaact tagtatggac cacatatgat
      541 gtgagatttc taatatttca catctccatg agtacaagtg aaagcaaggt aaaattttag
      601 gcaaatggaa gaattgggaa gtggtggctt tgtattttga aaaacataaa tttctactgt
      661 catgctatg
//
LOCUS       KCOD01003685            1003 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 409665pyr ultra-conserved element
            locus uce-1964, sequence.
ACCESSION   KCOD01003685
VERSION     KCOD01003685.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 1003)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1003)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1003
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="409665pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1003
                     /note="ultra-conserved element locus uce-1964"
BASE COUNT          294 a          179 c          225 g          305 t
ORIGIN      
        1 ttttttatgc aatgaaggct ttgatgtatt ctgctgtgaa gcacttgtaa gattatgagg
       61 agaaggagtg atgatgaatt tgggagcaac attttggctg gacccgtgac agcacagcca
      121 tttccgccaa ggcagctggg tgaataatgc aaaagccata ttccccttgt gtttaatctt
      181 gcattgtttt tgcaaagaaa atttctgctt gctttctaag tcatgtcatc ctcggttgtc
      241 atcccgtctc tcaaaccatc aaaacggtat taaatgttgc aaagctgtgc ggctagagaa
      301 ctttcaaaag tcagaaccca tttgcagagc agcccttgta gaaaatgtat tctgttctcg
      361 gcagaatttt ccttcagttc tttccactga gaagtttact gatttctccc agtggaatct
      421 gctggaattt atcggttcat ggttggcagt cacagattaa ggtaaatgtc gatccgtaat
      481 gaccctctac atgttagtat tgcagtaaag ctgggctttt atgtcaaaga tatcggagag
      541 ggagctatta cacatgacag gggtgatcaa gggactccag accaaggcaa gcattattaa
      601 atattgacta gttctgtgat ttatgtagag ctggaggaaa aaagtgactt tttaaccatt
      661 atatattctt cagcaacgaa aaccagccat ttatctcctg ctggtaataa agaacagagt
      721 gcctgcatat tttagtggag ggaaaacctg gccttataaa tgagatggac tctttcatga
      781 taacatttca gtttgctaat tgccaaaagc aaaacaggca aattggaagc aattataaga
      841 gttgacttaa agtgcctgct atgttggttc aactcaggag agccgggtgg tggtggaaga
      901 atcattgggg aatggaaccc agaaaatttc attacatttt ttcattgttg ctgaaacttt
      961 gctttgcaat gctaaataag taaagagtgt ttcccagaag tca
//
LOCUS       KCOD01003686             675 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 409778pyr ultra-conserved element
            locus uce-1533, sequence.
ACCESSION   KCOD01003686
VERSION     KCOD01003686.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 675)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 675)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..675
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="409778pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>675
                     /note="ultra-conserved element locus uce-1533"
BASE COUNT          212 a          136 c          136 g          191 t
ORIGIN      
        1 ttattttaag tttcactgtg ctgggtaagg aagaagagtt ggacctgctt tggagaccat
       61 caaacggatg agtagccaag caaccaaaga aggaaagata aagacgtaca taggttctca
      121 ccttcagata ccttggggct ttttgttcct agaggaaatc atacaccacc gcctattgag
      181 atccggtagt tgcagcggct tattaaacct acagcatatc tgttttattt aacttcttgg
      241 tggaaagggg ccaggaaaac aaaatgtact taaatgctga attttttttc caggctgaat
      301 gcctttcatc cagtaagaca ttcaaagcag tgacccagca aatggattga aaaagcaatc
      361 ttccgtctca gtgccacatt atcattccta ttcagtattc tcggtgagat atctcaatca
      421 gctggatgtg tgtgtaagtg acagcgcagc ccattgctgg gttaattaaa catttgactt
      481 taacaccctc cccatcatta agcaaataaa aacagataat tcaaactgca cttcatccac
      541 ggggtacaca acatacatgt caaaattaag agagtccaag gccctcaggg agttctactc
      601 ggggaggtaa tcagtttaaa tcttatctgg tttatcaatt attctattga ttaaagcagg
      661 gtgattatac aaaac
//
LOCUS       KCOD01003687             496 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 409889pyr ultra-conserved element
            locus uce-5736, sequence.
ACCESSION   KCOD01003687
VERSION     KCOD01003687.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 496)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 496)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..496
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="409889pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>496
                     /note="ultra-conserved element locus uce-5736"
BASE COUNT          139 a           96 c          100 g          161 t
ORIGIN      
        1 atggggaatg tgagaaagca ctaaaatgca caccagaagg aaaaacctcc tctaccattc
       61 actatattgt acatctctcg gctggaaaac acattctgga gcacggtagc gtgcacggat
      121 gtgatgtgct acttttctta cagtaatgaa ttttatgcct gcctgtttct gttcctttgt
      181 ctatttttaa ttcaaatatg taaaagcttt tcttaataca gagtcccagg tgtcagttgc
      241 tgcctggagt cccttttctt tcctctattg ttctcttaat tgttacttca aaacaattag
      301 ctgggcattc atatgcaaat gaatgcaaat gtacagggga ttgggtgtga gagaatacca
      361 ccactcgtta atttccactt caaggtctgc tggtaggaac aacaaaatta acaatgtatt
      421 tttactgggc cataaagggt gaactcacaa ggattccagg gcaattgtta agattctgct
      481 gtttcttggt aagatt
//
LOCUS       KCOD01003688             507 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 409999pyr ultra-conserved element
            locus uce-2289, sequence.
ACCESSION   KCOD01003688
VERSION     KCOD01003688.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 507)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 507)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..507
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="409999pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>507
                     /note="ultra-conserved element locus uce-2289"
BASE COUNT          157 a           98 c          113 g          139 t
ORIGIN      
        1 aaaactgtga tagccaggat atgaaagact cactgagatg tccctgtcct taatgagaaa
       61 tcacaaggaa gattactgcc actgcttgcc tatactctct gacttatcag ttggtctggg
      121 agtttaggct cctgcgatat tgaatgaaga ttataagcca gatgggccac aaattctgtc
      181 aagccttctt ggcagctgct ctcattacaa aagccagcca gccttttcca aaaataagaa
      241 tgtgaagcaa attgggctta tagaccctta taatgcaatt gcacgcagag atggggacct
      301 gagcgggcag gcagaaatat tattgatggc tgctgaaaac agggaataag atgttattaa
      361 gccaagtcag agatagatat cgatagctaa tataaagcct ttattggttt acaggctcca
      421 ggaaagaggg ttcagagctt cgaccctttg ctttgctttt aatttcacta gagatgcagg
      481 gtttatgaat aaaacatatc ttcactc
//
LOCUS       KCOD01003689             306 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 410105pyr ultra-conserved element
            locus uce-2336, sequence.
ACCESSION   KCOD01003689
VERSION     KCOD01003689.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 306)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 306)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..306
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="410105pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>306
                     /note="ultra-conserved element locus uce-2336"
BASE COUNT           88 a           60 c           65 g           93 t
ORIGIN      
        1 tttttttatt tgcctgactg acagaggatt taaatgcaaa gtggatctaa tgcacaccct
       61 gaagtcggct ggcagtatgc aaatgacctg tcagattaaa atctgaatga aagagataac
      121 aagcttatct tcataacaaa agactcttac gggcaaacta tttgacgcag tgttgatgtt
      181 tgttttaacc cgtggacttt ggacagtgca atatttcagg ggcttcgctc tcctcactcc
      241 ccagtgcttg cacgcctgtg tatttgtatt tgtactggca acaaaaggca agtgctatga
      301 taataa
//
LOCUS       KCOD01003690             882 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 410218pyr ultra-conserved element
            locus uce-1052, sequence.
ACCESSION   KCOD01003690
VERSION     KCOD01003690.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 882)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 882)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..882
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="410218pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>882
                     /note="ultra-conserved element locus uce-1052"
BASE COUNT          267 a          174 c          149 g          292 t
ORIGIN      
        1 agtaatttca tggaagatct tacaccacaa aaacatcatc tcctcataat ttctgcacgc
       61 taatataaac agatttctgt ctgaacatct taatgcaaat atactgcagt tgtctagtgg
      121 aaaacagcac tgtaatgact tccactatta aatttgtgtt gcatttgaaa aggcaatgac
      181 tgcatatgaa gcgctaaccc tggttcattg tttctctcat ctctccgaac atccctattc
      241 tggatccttt atttatcaag attaatcact gtaggcatca ctttttgtgc atgccatacg
      301 ttcataggaa cagcacttaa tccagaaagt tgccggatgg atggctctta caatgggcat
      361 ttacctctga aattggtgtc tatgcttgat gttgcatgca tctagtttgc atacaaataa
      421 agaattatac ttgtcatgaa gcaggtataa tcaatgaaag gcacagctgt cttaatcagg
      481 tttcgttagc ccgagcagct ctctgtgagc aagataaagt gtttttcaga ggtgttaata
      541 attactcata atctctccta tcatatcgca agacttttta catgcctttc aattttaagc
      601 aacgattaaa gcaattaaga ttgctgcatt tacaagctat ttttcattcc cagaaaatat
      661 cctacaccta cttgtccata tggtactttg caattggaac ataaggatag tttaggaaaa
      721 ttacgtatgc tcttatccct aatctgccta ttactggata gtatcttaac taatgaacct
      781 gactttcaaa gctgctctta agtggtggtc ttgtcatatc agagagacac aaaatgtgta
      841 acccaatcag tcaaggatgc tttgaacaag tttgttttgt ta
//
LOCUS       KCOD01003691             587 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 410328pyr ultra-conserved element
            locus uce-3377, sequence.
ACCESSION   KCOD01003691
VERSION     KCOD01003691.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 587)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 587)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..587
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="410328pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>587
                     /note="ultra-conserved element locus uce-3377"
BASE COUNT          193 a          112 c          122 g          160 t
ORIGIN      
        1 aatcaaaagt gagcagacaa aggtcaaaat accgaaagcc ccaagaacat taacacttag
       61 gatataaaga tttcctaaga aactaatgcg tgctctttcc ccagataaag cagacacctt
      121 atctttggga gtttacaaaa tggagccaag ctatacaagt aaccacttaa ctaaaccaag
      181 gcctggatct tttagcagtc tgcagtcatt aaagctctcg gaaagtctcc caggagccaa
      241 tatgcttgct taagtatatg ctgtaaaagg tccctgagat ttacaaggaa ctgctccatg
      301 ctaagctagg caccatctga taaacaagca attttagctt caggctaaac gatgctcttt
      361 gaggctttga tttacaatgc tgcagatgat atatttgtag ttctaggata ggttctgctg
      421 gggacctgct gtgattactc atccatgaac taagttaggg ctcagatctt caactaggag
      481 gtcagaaaat tgtcagtgga gcaagaaatg tttgagaagg tttatttagt tgctaaccac
      541 atttaaatta agcaaagaga ggtgaacaat tcttaagctt tctaggg
//
LOCUS       KCOD01003692             295 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 410427pyr ultra-conserved element
            locus uce-5042, sequence.
ACCESSION   KCOD01003692
VERSION     KCOD01003692.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 295)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 295)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..295
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="410427pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>295
                     /note="ultra-conserved element locus uce-5042"
BASE COUNT           72 a           77 c           68 g           78 t
ORIGIN      
        1 aatatttcat gcttggaatg tttgagtcga gatgatcccc gatggctctt tttatcatct
       61 tgccctgcca gctttgcagt tctctgtcag gaatgaagta atggcaacca gtcacggcac
      121 ggatgaatgg atgacccaga tggaaatcag tggcctcaac agttacattg tcaggcgtta
      181 catagcaacc cccaatgggg tgctccgcat ctaccccggc tccctcatgg acaaagcatt
      241 tgatcccacc aggagacaat ggtgattttt agggtccctt cagcaatcat ctccg
//
LOCUS       KCOD01003693             513 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 410530pyr ultra-conserved element
            locus uce-1161, sequence.
ACCESSION   KCOD01003693
VERSION     KCOD01003693.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 513)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 513)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..513
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="410530pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>513
                     /note="ultra-conserved element locus uce-1161"
BASE COUNT          171 a           92 c           96 g          154 t
ORIGIN      
        1 gcggggctga taagtgttca ttggcgcaga gagtaattac ctatctgtca gcgttgctgg
       61 tgtgtgcgaa atagtataaa tgaaacatac ataatgtaca gcaataatat cgggcatgca
      121 gaacctaatg cattatcatc attctcaggg ctcaggttta tgtggctgcc accactgagt
      181 aaatgccttc tagccatgat aatttcattc taatctctgt tccatattat aattttcata
      241 gctaaaagat actgaggagc aatacgtttc aatcaagggc taaatagaac acaacctgta
      301 actgggtatt ttatacacct atatataaaa aaaaaattta gtcaatttat gaatagactg
      361 aaataagctg taaatttatg gatgacaaac tctgtctgta gcaatgtcac aatgtctgga
      421 gacaggcttt acatatcttc tacaagggat gccagctttg tctatcatat ctcacaaaag
      481 aattcaaccc tctggaagaa aaaaggtttc tgt
//
LOCUS       KCOD01003694             444 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 410637pyr ultra-conserved element
            locus uce-7056, sequence.
ACCESSION   KCOD01003694
VERSION     KCOD01003694.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 444)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 444)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="410637pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>444
                     /note="ultra-conserved element locus uce-7056"
BASE COUNT          118 a           95 c           86 g          145 t
ORIGIN      
        1 aactttcgtt tgctgctaat tgtttggaat tctttgaact cacgtcttgc ctctgcctgg
       61 tacacctcat aaacagatgg agtgtttgtt gacgtttctg tgacagcttg aaaacttgtt
      121 tcctacctct gagctgagcc ctttctgcct tgtcctccat ctgccatctc attttaaaac
      181 tagcagaaca actcgagtga agcaattccg actttttcca tctgtgcgca gttaattaag
      241 agggtaatga gagctccaaa tgaacaagcc ctgcataaat tcaagatatg attaagggaa
      301 acatccatat atatgtgctt acgtacattt ttaaaagcct gagtcccttt tgtctgtccc
      361 tgtacttgcc accattacgg ttaaggatga tttaggaaag atgactatgg aaaactgagt
      421 ctgtattctg aacatggaat ctgt
//
LOCUS       KCOD01003695             444 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 410744pyr ultra-conserved element
            locus uce-7363, sequence.
ACCESSION   KCOD01003695
VERSION     KCOD01003695.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 444)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 444)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="410744pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>444
                     /note="ultra-conserved element locus uce-7363"
BASE COUNT          134 a          115 c           96 g           99 t
ORIGIN      
        1 agctctcctt tctgacagtg acagctgccc tggatggatt ggatgaaatg cgccctgttt
       61 ggatgctttc agaggatgca acacatctga gacttccaaa aaacagggga agcagcatct
      121 aaatcaaaat gttgccagca agactcaggg gcagagacaa tacttgctga agtctctcta
      181 gtgccttttt atggcagaca tgacagccaa tcctgatcca gactttgctc acgctctgta
      241 gaaaagagaa agtctgatca tcacaatcac aagtggcttc cagtcaagca taacgagcag
      301 ctgctgccaa ggaggaggag cgcaacgcta gacccagact tccaccacca ctcacatcat
      361 gtccaaactc ttcacgtgac catgatgcac agacaatcac accacaagtt tgcacatgga
      421 aacatttgtg ttgccttaca aatg
//
LOCUS       KCOD01003696             703 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 410846pyr ultra-conserved element
            locus uce-5012, sequence.
ACCESSION   KCOD01003696
VERSION     KCOD01003696.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 703)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 703)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..703
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="410846pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>703
                     /note="ultra-conserved element locus uce-5012"
BASE COUNT          196 a          129 c          146 g          232 t
ORIGIN      
        1 ttgtctacta ctaaagtcag tttctgaaat aagatactat ttgtgaataa ttaatcgtcc
       61 ttctatatgg aattattatt cttctgttga ttgaatgaag acaaaaggta tattcagtgc
      121 atttccaaag accttttaag tggctcagca aagcacataa tgcaggcctt gtcttacaag
      181 tctgtgatga tacagtttaa tagtgttata aggctatggt ggtgtgtagt tgtcatgatg
      241 gtagattgtg ctggtctgta tagatttact gtcattcttt aggcttttca tacatgacag
      301 aggttgtctg aagcacagcg gggacatgaa gcttgcaggg gttaagtgtt acttgcctcc
      361 tggcttgcta cacagtcctc cctgcacaca tacagagatg aggtgcaggg tacatccgtc
      421 accgggccga tgacatgatg gattactcat gtcattgtca gtacagtcaa aatcactctg
      481 ttgccgataa ggtggcccct tttctttact ctggttgagt gatgctattt tccctctggt
      541 tttaaaactg tagctcacac aaacatccct taaatcaaag atggagaaga caatttttaa
      601 ttgtacatgg gccataggag acaaattcct ttgaaaatta ctttcaaaat agacagatgc
      661 ttatcaaatg tttgcatcac ttgatttctt ctgatcctga aaa
//
LOCUS       KCOD01003697             826 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 410954pyr ultra-conserved element
            locus uce-4523, sequence.
ACCESSION   KCOD01003697
VERSION     KCOD01003697.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 826)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 826)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..826
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="410954pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>826
                     /note="ultra-conserved element locus uce-4523"
BASE COUNT          250 a          137 c          151 g          288 t
ORIGIN      
        1 ataaatcttg agtataattt acattaaaaa agaatggatt gatatttgag ttttatcagt
       61 ttggatccaa ttccctgaaa cataaagttt tttagaacat caaagcaagt aaagaacaca
      121 ctcaattcca gaacagtttt gttggaggaa gagttgaaaa aaaaattaaa tataagtttt
      181 gggttgacat aatccaggtt aaatctgtac ttacttttgt aaaggccatt ttatcactca
      241 gagaatgtca catcaattgt aaagccatca gcctcaaggc ttgttggtga ttgcttcata
      301 tttactgtta gtccagcaat ggagatggta cttttacagt ctttgggcag actagtgagt
      361 gtgacattta aagtgttgat ttttgcagca cttatgttaa ttgttgtaat tttcctgatg
      421 aaccaccatt ctggttccct gatgcagcca agatagtttt acattttcta tgcaggcctc
      481 tttgccattt ggtctgtgta gtgtcagctt cgagtgctac tgaaagcaga caaaattgca
      541 agcaaattgc atcagattgc caacattgtg aaaaggtaaa ttgcttgcaa atctatttaa
      601 accactgccc tattttcatc agcttcagta cttggtattc atgattgctt aattggcgac
      661 ctttcctatt gtgtagtgct ttatggtgta atggaaagcg atctttacca aaccaattac
      721 cctttttttc tcagcactac attattgctg tgattgcaac tgccagtcct ttgtaaatga
      781 actttctgat ttcaatgatg tttttaaaat gtaagataga aaaaag
//
LOCUS       KCOD01003698             598 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 411175pyr ultra-conserved element
            locus uce-3695, sequence.
ACCESSION   KCOD01003698
VERSION     KCOD01003698.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 598)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 598)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..598
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="411175pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>598
                     /note="ultra-conserved element locus uce-3695"
BASE COUNT          205 a           88 c          104 g          201 t
ORIGIN      
        1 taaatgatgc agaatagttt gtgttgctgc ctaaccaaaa tacaaagttt ttgattaatc
       61 aagcaagtgg tgttattgag caaagcaaat ctataatctg agtaaatatt acacagtatt
      121 attaaacaag cttaaaaaag aattgtacta gacttaatta aggcttcaag taaagcttgc
      181 ttttattggc aatttttttg ttgcaagaag aaaactaaaa attaagagga tggttggcag
      241 caatattgat atgctaatgg ataaacatgc taatttagaa aaaaactaat cagcaaagac
      301 attactaatg gaaatgtact agaaaatggc taatgctgta tgcagacctg gtatctccca
      361 aattaagaag aactcatttt gtgtttataa ttgtaacttg gaagctaagc cttgatcttc
      421 tctctgcctt gttttggtta gtatttaaag atatttcaga tgacctgtcc tggtcccatg
      481 acacctgttt agcgtctcta taattatgct gctgaaatta catgttctgt ttattgaaag
      541 gagagctaaa agtcttactt ttttctgtct aatttaccag acacttaaag agaccctt
//
LOCUS       KCOD01003699             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 411284pyr ultra-conserved element
            locus uce-4039, sequence.
ACCESSION   KCOD01003699
VERSION     KCOD01003699.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="411284pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-4039"
BASE COUNT          211 a          113 c           92 g          224 t
ORIGIN      
        1 cacatacttc atgaattata catgaaactt tgtctcacag tgactgttgc taaaagactc
       61 tttcatcact cttatgttta aacaaaccac agtggttttt aaataagtct gatcaaaggg
      121 gattatgata aagtgctaag aatgacttcc aaaatagtgt acatttcata ttgatgtgtt
      181 tcactgcaat ttgggtcatg ttcctctgct ctcagttgtt agcagaatga tgggcagacc
      241 attgcattcg ctttcaaata caacattgat agctggattt acatttcttt ttaagactca
      301 gctttagcaa acacgcctta gatttcagac ataattctgt tattcaaatg ggagaagagt
      361 ttgatagcta tgctaatcac ttttatctga gaaaacataa ctaatagctt ggtttacatt
      421 tgcctgcatt tatgagcata attttagcac ataattttat tgcaccataa aacataatac
      481 tgcattagcc tgctcttaaa aaaagttacc ttagagtgat ttgtacttaa accttcaccc
      541 tacgtttaaa taacagtatc attttaaaat tttgaccttt taaaatcaat tttaaaacaa
      601 acctgtataa caatttaacc tacaaggcta ttatctgtag
//
LOCUS       KCOD01003700             659 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 411394pyr ultra-conserved element
            locus uce-1193, sequence.
ACCESSION   KCOD01003700
VERSION     KCOD01003700.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 659)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 659)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..659
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="411394pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>659
                     /note="ultra-conserved element locus uce-1193"
BASE COUNT          207 a          114 c          125 g          213 t
ORIGIN      
        1 tgttaccaaa gacaaaaatt agggtgggag caacaaggca tcctccataa tagtgttttc
       61 ttcatttcaa gctgatcagt aggaagtgga tttagaagtg ctttaaatca tttcacatca
      121 tttactggta atctaaccag catgaactgc atgtacccta agtgctgatt ttttaaaaag
      181 cataagagga agagcaaaag aactttttat tctaagtcat tctgtaattt acacattttt
      241 gtatcagccc acttactagt gccatacata agtgtttcct ctgaacagat ttaattttta
      301 attttcctga atcagtgtta accaggaaaa aggtaattgt tgtcaagagt attcaaactg
      361 tcagaatatc attcaatcta aaagctgtta gaatctgtgc aaaagtaatt actgaaactc
      421 tattcaactg taataataac ctgccactga tgacagcaat tactggggaa agtgtaatag
      481 aaatcaaagg cgcatttttc tctgacaagt acatttctaa ctaaggttta cattggttga
      541 atagtgttga caatgatgat gtgctgtatc actcttaatc acggctggca tgatgttaca
      601 gtttgagctg ctcgggggga ctaattgcgt gtttcagctg acactgtccg tgctctctg
//
LOCUS       KCOD01003701             360 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 411504pyr ultra-conserved element
            locus uce-4436, sequence.
ACCESSION   KCOD01003701
VERSION     KCOD01003701.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 360)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 360)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..360
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="411504pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>360
                     /note="ultra-conserved element locus uce-4436"
BASE COUNT          118 a           61 c           83 g           98 t
ORIGIN      
        1 ttgaaaaaga aagcaaatga attctgccac attcccattg ctgtactggg aacataatgt
       61 gggccaagga aaaatgctgc agaagcatat tttggaaata ttgactgcaa atgcttggta
      121 agaagtgagc tcatacatag cataattgca tttctgaaca gagattagat taggctcttc
      181 tggagtagca aattaagaaa aatttacctg attgttacaa gcaacaatga tgtgctctgg
      241 ttctggcatt acattgcttt tctgggccac aagggtatct ttggtacgtc ctggaagacg
      301 ataggaagaa aagagtccat agtattgctt catacagaga ggatgaccag acagctgtcc
//
LOCUS       KCOD01003702             422 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 411614pyr ultra-conserved element
            locus uce-2031, sequence.
ACCESSION   KCOD01003702
VERSION     KCOD01003702.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 422)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 422)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..422
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="411614pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>422
                     /note="ultra-conserved element locus uce-2031"
BASE COUNT          104 a          123 c           86 g          109 t
ORIGIN      
        1 aatagctatt gaacagcagc taagtgaatg catgtctgca gtgtgagcag ttttgataaa
       61 cagcctctgc gggccacaca acggggataa tgtatcctta agtactgcca atgagctgcc
      121 attctgcaca gccaattact tctgtgcgtc tgtcactcaa aggaaaaatg actgagccca
      181 ttagatcaaa cctttgtcac tgttcctaat gcactcttag gcctcattaa tctgagggag
      241 cagcaacaca gccgccggtg cctcattgcc tcccccacaa caggcccacg tgaatcttct
      301 catctctccc ccaagtgcac cacgttaatc aagctctcct tattaccccg gtccctgtca
      361 ggcggagagc gctctctctc ttaaatgctc tcattatggt ccatctttag agccggctga
      421 gt
//
LOCUS       KCOD01003703             452 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 411714pyr ultra-conserved element
            locus uce-3348, sequence.
ACCESSION   KCOD01003703
VERSION     KCOD01003703.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 452)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 452)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..452
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="411714pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>452
                     /note="ultra-conserved element locus uce-3348"
BASE COUNT          142 a           76 c          112 g          122 t
ORIGIN      
        1 attgcaatca ttacaaggaa acgtatacac agatgttgtg ggagtttgga aaaaaaaaag
       61 agaaaagccc ttacgtagct gacagcctga caactttgca tatgtgtgtt aacaggagaa
      121 tgcgctgtgt ttaggatgaa tggagaagcg ggcctaaatg actttcagat tagctggaac
      181 agatggaagg gtcacagttg aacaacttta cacaggaaca taaaggcaat gttcaagtgg
      241 agttcattgc ctctgacaga tactgtcaat cggggactct cagttaacca gcagcctgtc
      301 cttttaaaga ttaaatttat tgtgaggtgc tgactggagt ttatctggtc tatgataaac
      361 tccaccctga gtgactagca ttttcaaatc aagcacaagg ggatgttttg agaagtgagt
      421 tacaggctgc tttgggagat ataattcctg ca
//
LOCUS       KCOD01003704             559 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 411814pyr ultra-conserved element
            locus uce-2478, sequence.
ACCESSION   KCOD01003704
VERSION     KCOD01003704.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 559)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 559)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..559
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="411814pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>559
                     /note="ultra-conserved element locus uce-2478"
BASE COUNT          196 a          108 c          106 g          149 t
ORIGIN      
        1 acaaatacag gaagaattaa cttagaaaga atgattagta atacaaacca acccttggct
       61 cattgagtga aaaagaaatc atcatgcaaa ccatcagcaa gcaaaggtca gaggtcgtta
      121 gaggctcaga aaaggggttt cccacattgt ccctgcagca gagtcacagt ttccaatgat
      181 cacttttgtg actatgcaac tgggctcata ttactagctg caacatcaca aaaatgacac
      241 tggcaaccgc taattagctg gcaaaataag aatttgtcca tttttaaagt gagcagtgtt
      301 agtaaatgcc attgcacaca gcgagaagtg atagcataat agatatatat tttaagcaaa
      361 gccctcacat gtgatgctaa ttatctttta gcttagcagt ccctctttaa agtgtaaatg
      421 tgctccctct gggctcaaga aatatttaat gacacatatc agtgcatgac taacaagcta
      481 gtccagagca ataatgattg gtctattgtt caaaatgaaa ttaggactcc agaagcattt
      541 aaaactgacc agtggtttc
//
LOCUS       KCOD01003705             523 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 411922pyr ultra-conserved element
            locus uce-1558, sequence.
ACCESSION   KCOD01003705
VERSION     KCOD01003705.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 523)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 523)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="411922pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>523
                     /note="ultra-conserved element locus uce-1558"
BASE COUNT          154 a          117 c          113 g          139 t
ORIGIN      
        1 ctataaatct gttttctcat gcccaagtag tccttgatga gacatgtgag gaaacgcaga
       61 acggagcaat aatcataaaa taaaagaatg agacagaaca aagctttttt ttttaaagac
      121 acacacaaaa catttgttct gctccagctc tttgtgaact aattggctct cctggaggga
      181 caggtaattg tacttgacta cacaagctgt cctgaagctc ccttggaaag ctccagtaag
      241 cttccagtgt tagcagccat caaggatttc acaggtcagg catcggatcg atacagctaa
      301 aagcagcagg gactgtaatg tcgacagcag gtttcagaaa acgctgcaag tgccagtttg
      361 ttccccttca tgcagaagct caagacagct taattaaccc ttggaaaata caatttatcc
      421 agaggctctg cgggtctgta ctgggcctta ttggtgagct gctagcagag ataccgtagc
      481 tggcagctct gaattcccat ttcccccttt attcagttag aat
//
LOCUS       KCOD01003706             807 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 412032pyr ultra-conserved element
            locus uce-7610, sequence.
ACCESSION   KCOD01003706
VERSION     KCOD01003706.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 807)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 807)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..807
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="412032pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>807
                     /note="ultra-conserved element locus uce-7610"
BASE COUNT          246 a          155 c          166 g          240 t
ORIGIN      
        1 gctagcactt tgcatgtatg aatgacaaag ggacaccact ttcatattga tttaagcaag
       61 ccagtggaag aatgtttaaa catcaagtgc ttgatgtacc agtttgccag agcacctgga
      121 aatatcaaat taattccagg tgttctgcca gcttgctgct tttacagcca cacatacaaa
      181 atgtggctcc cagttccaca aataaaaaca gaatggtttc tgctcctaat gcctcgataa
      241 ttccgacata ttgcaagttc tggaaagaat tttaatctac atagaatggg gaggggagcg
      301 agattttaaa tatgctgcat acaatttgtg atggtcatct ctaaaatgca gctccattat
      361 ccttttccat ttggaatgaa tgaggctaat taatttcagg ccatacttga tgaggtcagc
      421 accatacgaa gggtgcgtgc tagacattgc taatctcttt cagctgagag tgatgaatta
      481 aagatgaagc attcctttgc aggcctaatt tagaatgtat atcaaaaacc tacagcaaat
      541 aatactatac cctacaacaa aggaaaactt gttctctcag gctcccatgt agggttgatt
      601 ttaaaggcat tttcatttcg ctttggaatt ccagctgtgg atgggtgaaa cagttcagaa
      661 aattcaagct ttctctcttt ctattgcttt tatagacaaa agtaggcaac ctaaggggag
      721 agagaaactg gtccgtgttt gatcctgtat atcctgtgat tctgactgta cgctcggcgt
      781 ttaggaaaaa atacctgtga cgtgaca
//
LOCUS       KCOD01003707             790 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 412144pyr ultra-conserved element
            locus uce-1601, sequence.
ACCESSION   KCOD01003707
VERSION     KCOD01003707.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 790)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 790)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..790
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="412144pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>790
                     /note="ultra-conserved element locus uce-1601"
BASE COUNT          174 a          205 c          180 g          231 t
ORIGIN      
        1 ttgattcaga gctggcagtt gatgatgagt acacaggtcc tgtgccccta tccagtcttc
       61 ccatccccag ggtactgggg actggagagc aggagcaaag cttcttcagc tgaggcagcg
      121 ggtgctggct ggcatacagg ctgctgccag ctctgtgtca tcggtgcaca ccaagggcag
      181 ctcttctcct ctcctctccc tccaggtcta ggttttactg tgcttttaag taattgtcac
      241 cccttaggga aaagccttcg agaaggcaga aggctcgcat aactctggat cagtaaagga
      301 agcagctcaa ttagcatttc acacgccttt tcttccctct cctcttacct tccctgcagc
      361 gggcatgctt tccccttaaa ggattgtcct gtttctgctc cttgccagcg ttggcagggt
      421 gacagtagtc gagtgtgcaa acttgtgcta ttgtccccag gccaggggga gtcatggaga
      481 cccactaata tgacacagga aaatgtttgc tgatggcaat tctatgggct ttgtctaact
      541 ctttctccat catgacgact cgatttaagt ctctaactgt ttgactacag atgcaagagt
      601 actatccaac tccatccttt tgttcgggta gtttgaatgg gtaattcagc ttttgtgtaa
      661 ctcaattgag ggggcaaaca taaagacaag attcttgagc gctcaagctc cctttccatg
      721 gatatctgca catctcttta gaggtttgtt cctttcctac ctttctctga catcatcctc
      781 cccttaaaaa
//
LOCUS       KCOD01003708             503 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 412256pyr ultra-conserved element
            locus uce-2599, sequence.
ACCESSION   KCOD01003708
VERSION     KCOD01003708.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 503)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 503)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..503
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="412256pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>503
                     /note="ultra-conserved element locus uce-2599"
BASE COUNT          183 a           98 c           72 g          150 t
ORIGIN      
        1 gttctattga agatgaactt ttaaaatatt tataaattta catgaatatc atccatatat
       61 accatgacac atttcaataa ttattctaca atacaatggg agtgcatgct caaacaaaac
      121 acctcagcag tattttaaag cagtaaacca cctagccaat ttctgtacgt tctgtagttt
      181 ttctaatcca ctctccctgt ggttgagcaa aatcgaattg cctctcacat ttgcagacag
      241 ctctgtgaag gtgataatag agctgctccc tgctgtcatg aggcaggaaa taggaaaatg
      301 gcatatgggg ctagaaagaa ataaaaagag aactaaacaa gaacaaaaga gatttcaaca
      361 aaggacaact ataacccaat atgctttgca agttaatctc ttttcataat aatttaacgt
      421 acttaatcat ttatctgcac acttctcaaa aatccaaatg cttaatacca acttctctgt
      481 aaagttttat tgcccaaaac att
//
LOCUS       KCOD01003709            1004 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 412366pyr ultra-conserved element
            locus uce-61, sequence.
ACCESSION   KCOD01003709
VERSION     KCOD01003709.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 1004)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1004)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1004
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="412366pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1004
                     /note="ultra-conserved element locus uce-61"
BASE COUNT          320 a          226 c          156 g          302 t
ORIGIN      
        1 tatttaccaa catttcccca tgtgtttctc cttttcagag ctgtggttat ttttttttcc
       61 cctaaagtat ctgatcagag attgtccggt aagagcactt tattagatca tcagtcagag
      121 ggttttacaa gcaccaagag ctatgggctc aaatgcagca catcagtttt aatagccgaa
      181 ggtctaatag taaactgcag atactgctga gaactttcca tgcactgaac tcttgaaaaa
      241 gcaccatctc tcaagcttaa atgcagctgc ctctttcaat gccgcaaatg ggtaaatttg
      301 acaaaaaagc caccattaag actacatgaa aggctcaaga caacatcctt tcaatgcttt
      361 gtacttcagt aatcagatgt acttactcac cccctccccc aaacccgatc aagaactatt
      421 tctgaatggt aggaaataat tccactttgt acatctttta gttaatcaag actttctatt
      481 cagcaatttg accttttgtt caaaacagga ttatcagttt tttcgccagt taccaagggc
      541 gactcgcatg gtgaacataa ttgcaataat ttgcaaaaca ccatggcaac ccacattaca
      601 actaggtaaa tactggtctt ttgtgctaca ttgttatttt cagagatgct gaagtcaaag
      661 aacgaatgac aaatgaacac aaaatttata tttgctttgt ctcaaaagag aagaaaattg
      721 ataacaagaa ttggggggaa accgactaca gctgtaattt ctaacttgat taattaggat
      781 ggtaacagtc cttaacagta tattcaacaa acagccctga cttagtttct ccacccacct
      841 ctctctcttt ctacactact accactaacc cccaccccag acaaattttt tcagctagga
      901 gaacaaacaa ctccatttgc tcttttcttc aacttaatgg aatccttaat tacagaatat
      961 tgttctcctg ctcttcatta cactgaaaac tgaaagtgag agag
//
LOCUS       KCOD01003710             731 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 412477pyr ultra-conserved element
            locus uce-7105, sequence.
ACCESSION   KCOD01003710
VERSION     KCOD01003710.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 731)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 731)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..731
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="412477pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>731
                     /note="ultra-conserved element locus uce-7105"
BASE COUNT          215 a          127 c          151 g          238 t
ORIGIN      
        1 gcactcacag gatggaaatg cagcctgaca agtctgaagc tgtgcacaga aagagataga
       61 taaactctgt taaccacaga agcaggtttt aaatacatta aaatatttta tcccattatt
      121 tgttttgacc aattgaccac aatattaaaa attcaatcat ggagcagctg acaagtgcag
      181 ttgcctaatt ttatttaagg gttctttcca tttttccatc ctgttaacgc tgctgcctgt
      241 gcccagacag taatgggctt cttgtatgcc cacgactgtt atgatcatgt aaatttattg
      301 gtgcttagaa gaagcgagct attaaaacat tacaacaacc attacagcca ggctcgtgtt
      361 ggctttcgct cccaatgaac atatgcttcc gagtgaatgc ctaaactctt atttatggat
      421 ttaatttaat atgcggaaag aattcaaaat taaattttgt gtctgcctcc agagagtgtc
      481 agtgtataat aacatggtaa tttttacaca tctttatgag aaatgggaaa attaattctt
      541 tctgacaagt tgtaattatt cgacttggaa cagttgcagc tgagcagttt gcatgcctgt
      601 tgtctgttat tgcacagtgt aaggggaaaa cgtggggatg gagatatatt gtgtgtctga
      661 gagtttctaa tagcttctga cattttagcc ctgcatatta tcagggtgtt ctttaaagga
      721 gtgggcactg t
//
LOCUS       KCOD01003711             736 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 412589pyr ultra-conserved element
            locus uce-5404, sequence.
ACCESSION   KCOD01003711
VERSION     KCOD01003711.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 736)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 736)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="412589pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>736
                     /note="ultra-conserved element locus uce-5404"
BASE COUNT          205 a          165 c          151 g          215 t
ORIGIN      
        1 cttcccacaa aggagctgca agtattcctc tgcaccacaa aaaggacctg ccaatgagtc
       61 taggacagaa agagttaaac tcagacgagc actagctcca acacagttaa tccatataaa
      121 gctcatggat ttctctgcag tgatctttgt ggttgtcatt tgcattttcc ttttgtgaaa
      181 tcttttcttc tttcctttta cactcgtatg catgcagaaa ttagcatatt gtaccgagag
      241 tgggagatgt aagaagccga ccccctgctg ttcagcggat tgtgcaatct gcaggcggca
      301 tcaatttttc agcagttttc tcatttctca ttacagtcag ggcaccgcac agctcccgat
      361 tcaacacaat ccctagtggt cctacagaca agcatatggg ctgtcgaata gccgtactgc
      421 tactttcata gcattaatat ccttgtttat gcttccaccg taattaatcc tggtattaat
      481 atagtttggg cttagcttta ctaattatgt atgggctagc aggataatta tgtcagcaga
      541 ctcccgcgct gatacttgac agcagtttgc taaccttagg agctgcacat aaacactctg
      601 gccgatcctg ccttggaagg aaggcagaga gaggaggagg ctgtatatgg cgactcgatg
      661 tctgataact ataaatactg ttttaaaata aggaaatttc acaagcacaa taaagttgtc
      721 cttaggtatc aaactc
//
LOCUS       KCOD01003712             659 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 412695pyr ultra-conserved element
            locus uce-6748, sequence.
ACCESSION   KCOD01003712
VERSION     KCOD01003712.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 659)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 659)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..659
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="412695pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>659
                     /note="ultra-conserved element locus uce-6748"
BASE COUNT          203 a          119 c          128 g          209 t
ORIGIN      
        1 ccctcaggta cctgtgccag gtggtggatg gagcaaccag tgatgcaaat gcagttcaga
       61 agctcacagc gatgatcaac cggctttctc acacgggttt ctcaagaagg tgggagcaga
      121 caacattatg atctaataaa ctttattttt taaaaatgac catttttcca ttgtctttcc
      181 taggaaatta aaccctttaa ttcataccta ccctctacat aatggttatt gagtactcca
      241 caatatatta agtctagatg ttatggtaca tgcatacact ttcaggctgt tgattaccca
      301 ctgtcaccaa tacacataaa tggaaaaaag ctatgaaact gtatagggct gtatatatac
      361 ttgtctcagc ttcattagag caggaaattg ctgtgatttc cagcaggtta tgtaagtaat
      421 gtccaaaaaa aactatgaac agagtaaagt acaagactgt tttgaggaga ctttctactg
      481 tgtactttaa aacatagtaa aatttctttc acaaaactta gttacatggg tactttgttt
      541 tatagtgcat tatagtctag gaagtctcat taaaacactc tttcctttct tttgttaggg
      601 tggtttgagt acagactatt gctggggcag gggaggagat tattctaact tcagaggac
//
LOCUS       KCOD01003713             270 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 412799pyr ultra-conserved element
            locus uce-7100, sequence.
ACCESSION   KCOD01003713
VERSION     KCOD01003713.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 270)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 270)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..270
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="412799pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>270
                     /note="ultra-conserved element locus uce-7100"
BASE COUNT           98 a           52 c           44 g           76 t
ORIGIN      
        1 gaagatcatc cagaatcaac ccagtaaaaa gaattgtcat aaaatctcac accattgact
       61 tgtaaatgga attgaatctg tggagtctac ataatgatcc tatcaaaaag ggaaagagct
      121 atcacattca tataacagat gagatatgaa atgactacta tggcagatga acaccccaga
      181 ggtattttgc tttattctac tcactgcgtt tatatctcca gtttctctaa ttttagttat
      241 cctcaggtct caagacaaga acagaaagac
//
LOCUS       KCOD01003714             598 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 412902pyr ultra-conserved element
            locus uce-930, sequence.
ACCESSION   KCOD01003714
VERSION     KCOD01003714.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 598)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 598)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..598
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="412902pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>598
                     /note="ultra-conserved element locus uce-930"
BASE COUNT          193 a          126 c          113 g          166 t
ORIGIN      
        1 ctacttcaca ctcccacact ggagttttct ttgcaggaag ttttaaacat tgcaaacaga
       61 aattataaag acagtgagac tggagaagaa cagcagtcag ttcactgcag gcagcctctc
      121 ataactctgg gccaaattca aacctggtgt aaacagaagt caatcttcag caacaggggg
      181 attagccccc actcgcacta ggtttgactt tgctgcttga tgtttatatc actagagacc
      241 aaagaatata cttgccagac aagaatagga atcattaagt ctgtggtcca aagtgaggcg
      301 ctgaaccatc tcaaagagtg aagcgtggtc aaagttacag ggattggaag agataaattc
      361 atccatgcca tgcttttgag ctctatctgc atctgttcat ttatacatat agagaaagac
      421 accatttaga gagatataag acattttaat tgacaaataa aaaaatatac agtatgaagc
      481 atgaaagcca agtatctcct cttccctcca ttgccattaa gttttctctt tgcaggctgt
      541 acagtacact tcacctccca ttgtcaactt gcatcagtta tggactatat tattgcat
//
LOCUS       KCOD01003715             497 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 413011pyr ultra-conserved element
            locus uce-2111, sequence.
ACCESSION   KCOD01003715
VERSION     KCOD01003715.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 497)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 497)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..497
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="413011pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>497
                     /note="ultra-conserved element locus uce-2111"
BASE COUNT          165 a           89 c           93 g          150 t
ORIGIN      
        1 tttttgcaaa gctgtcatat ggctggctta gatgaaactg gaaggcttta tgtgggtaac
       61 atttaacttt aaacattctt catggaaact tacatggcac ataatttaca tattcaatac
      121 cagtgacaat ttacttctcc catctgagca gggctttcaa ctatgccact tgaactaaat
      181 taataaacag taattagaga atgttgtgcg agtgagctgt tgatgttgag aagattctaa
      241 tcaacacctt cttttaaggg ccaattaaag ctgaatgtat gcaatataaa catcttcttc
      301 tatttagaca tgaactggtg aacaaggtaa aaatcagaac aattacagca ggttagagat
      361 gatccaatgg aaagatgaag ctttgaaaac agcagtaatt tctgaaaacc aatggccacc
      421 ttccatggag aagcactgag aacctgtgca atttatctca atgctttcat tgtcaggctt
      481 tctctgaaag cagctct
//
LOCUS       KCOD01003716             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 413116pyr ultra-conserved element
            locus uce-2043, sequence.
ACCESSION   KCOD01003716
VERSION     KCOD01003716.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="413116pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-2043"
BASE COUNT          239 a          107 c          122 g          234 t
ORIGIN      
        1 cttctgaatt aatttctgta ggagacaata tggatgcaat gtttttaaag cttaatttag
       61 attcaaatta atgtgaagac aagctccttg agtcacctag tctttctctg tggaatcatt
      121 tctaattgaa tgttaagatc aaagtttaag tttataagaa agaaaaacaa gtgcagataa
      181 atagttatta tctgacatcc ttatgaaaat tcatgacctg ccgctttatc agagaccttt
      241 taagaattct aattgtgaag tatgcataac tattaaatgg ctagagcgct tcagtctctt
      301 gataagaagc gagttaaata attgtcctgt ttaacttgtg cttgttaacc tttaaggtca
      361 actagtttga acatacgttt aatgaaatcc tggagccaga atttatgata ctgctgctga
      421 atgttaaatt ggacaattta cataagcagg acattaacct tctgagcact aaatagcatt
      481 ttagcactta gccgctgggg acaataaggg acatgttcta tatatttgtg attagcttgc
      541 ctggaaactc tcatgatgac caattggcct accaagttta gcagcataat taaatgaatg
      601 gactcagcct aagtaaatta tcagtgctgt gtacagtata tcattatagt cctaaggaaa
      661 aaaaaagata tgaataattt aatattacat tactaattta tc
//
LOCUS       KCOD01003717             509 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 413221pyr ultra-conserved element
            locus uce-2300, sequence.
ACCESSION   KCOD01003717
VERSION     KCOD01003717.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 509)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 509)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..509
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="413221pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>509
                     /note="ultra-conserved element locus uce-2300"
BASE COUNT          153 a           91 c           99 g          166 t
ORIGIN      
        1 tttaaaattt gaactgattt catattaatt ttcactgcac ttaaaagact gtttcaatat
       61 ccaagtgaaa atgattcttt tttcagtgca tactagactg acttccctga tcacagcaga
      121 ctgaattgta tttttgtgag actcttcagc aggcagccaa attttttccc cgctgcatgg
      181 tttgctgttt gcttaagcaa aaatccaatt tctggagaag actccacaag ggctaaattc
      241 cctgccattt acaagtgtcc cattagagta gctttctata tggaaataac agtccaagag
      301 aaggagagaa agagtaggtc tgaggtccac ttttcctgat gtgttttatt atttctttga
      361 agagtagagc tgtgctccca tgagagtaat atctgaatac aaatgtctca aaatggagct
      421 tctttaaaag taaagtatgc atcaaggaca aggggagacc tgacagcttc agactcatgc
      481 tgtcttttgt tgaaaggttt ttaattaga
//
LOCUS       KCOD01003718             635 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 413326pyr ultra-conserved element
            locus uce-5531, sequence.
ACCESSION   KCOD01003718
VERSION     KCOD01003718.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 635)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 635)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..635
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="413326pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>635
                     /note="ultra-conserved element locus uce-5531"
BASE COUNT          189 a          118 c          114 g          214 t
ORIGIN      
        1 tttttcatca tggatgtagc ctgaatatcc taatttatga ccatctgttc tccagtcaag
       61 cagcccatat gatcatcccc taggtcagct aatagtcctc tgtaaaaagc cataaacacc
      121 tctaagggaa ctgcccttcc acagcccctt gtacaacaca cccagcaggg ccagtcattg
      181 tatctgttta ttcattggtg ctcggtaatg gtaacgttca tttcatttag gatttgattt
      241 gtttacgaac taataaatat gatttataaa aagtgcgtgt ggttcactaa ttactgcaca
      301 tatggcgttt tcattttgta aaactggcat ttgctttcta ttatgattat gtctctgttc
      361 accagtgcta attagtttga ttagacagat aactttaacc attattagga ctagatatgg
      421 ggaactttgc atgcagggga atgcagggag gaagggttca tcaacagtga agataggtca
      481 gcaacacaga gattgttcct cattaaatat tttaaaatta gtttttgttt tgttttccac
      541 atagaagaac tgagaagcat tcacatttag ctacttacaa aaatccaatt aaacacagtt
      601 gtttagcatg aattgttaat cagagttaat ctttc
//
LOCUS       KCOD01003719             571 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 413430pyr ultra-conserved element
            locus uce-5982, sequence.
ACCESSION   KCOD01003719
VERSION     KCOD01003719.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 571)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 571)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="413430pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>571
                     /note="ultra-conserved element locus uce-5982"
BASE COUNT          191 a          123 c          105 g          152 t
ORIGIN      
        1 ttcaactttt acagatataa aagggagttt agaatgtcag ttttcactgc acctagtaca
       61 aggcaggaca acatcatcta ccatcctctc cctctcgtac tacctagatc tttattcaag
      121 agaaactgca tgtcacacac gtgtccaaag caagaggatc tcttgatgat ccacagatta
      181 attaaaaatg ccttgttttc aagtttccta agataacgaa caagaatttc agtagatatc
      241 agatgaatgc atgacaacca tctaaccagc ctgcagattt aggaatccac atgtaggctg
      301 agaagatgcc tgctcacaca cacacacgat gctaaagaaa ttactagagc agcattgata
      361 tagtgctcat tctgttttgg cagaagcttg gtaaatacct taaatacaag tgatttaatt
      421 tactcaccag gcactgtagg aactagcctg tgttaacatg gacacatgcc agggagcagt
      481 gccccagtga cagatctaag atacaaaaga gctcagagat ttcatcatga aattctgcag
      541 tgactattca caattttagg ctcagatgca a
//
LOCUS       KCOD01003720             757 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 413538pyr ultra-conserved element
            locus uce-518, sequence.
ACCESSION   KCOD01003720
VERSION     KCOD01003720.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 757)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 757)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..757
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="413538pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>757
                     /note="ultra-conserved element locus uce-518"
BASE COUNT          235 a          158 c          122 g          242 t
ORIGIN      
        1 tgggacaaga gaggtcatca gtagctgtgc atcatctgtt ttgcatccac ttagcaatga
       61 gattcctaaa ctcattacca gtaacttctg ctggaaaata tctataaata aaacaaaaat
      121 acagctatct gtaaaatgta tttgccataa aaacagataa aacaaaaagc ttagtaaaaa
      181 ataaacagta aatatgccag cttccataaa atattatata ccacagctct cttaatccta
      241 ttctcttact ccaaagacag cagtgcattt ttttccatgg ggtcttcctt atccccaaaa
      301 cacatctgtc ttgagtttct ctcagatttg tcaggtggat cagtgctccc cagggcctgc
      361 tccatctgaa gtattttaat ttgactaaac acctgattta ttttatctct ccgatgagaa
      421 aggcagtttg tcttaataga gcctgtcagc ccacagtctc attcacagca atttacaggc
      481 agccagggat gctggaaaag aagagtgctg tgattctgta ttttatcctc ctccagaaag
      541 cacctaaaag cagctattca ctgctactgc atgtggcatt ttagaactga attagctttt
      601 tattcaagta actacacttg ttgtgaatag cttatctgta aaattgctac attcactact
      661 gattttatta acctttggct ctatcacaaa atggtcttca gttaggaaag acctttaaaa
      721 ttgacacatt tttcttaggg gcctttattt cagtgac
//
LOCUS       KCOD01003721             637 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 413649pyr ultra-conserved element
            locus uce-1417, sequence.
ACCESSION   KCOD01003721
VERSION     KCOD01003721.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 637)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 637)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..637
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="413649pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>637
                     /note="ultra-conserved element locus uce-1417"
BASE COUNT          215 a          113 c          134 g          175 t
ORIGIN      
        1 ctactgcagg atcacagcgc atcatcagaa gagcagaacg ctgcaatcca aacaaagaag
       61 aaaaaaggaa aaaaatgaac aaccagaaga gttagaagct tttactatta actatctcca
      121 attatttctt tttttaattt acttttactt tatttctttg aaagaatttg tggctaatag
      181 tataaaatat tcttacatta cttgcttgta attaaatatt ttaagctgtt tctgaagcca
      241 caagacagaa gattcaggca tggaggcaaa tggttttgct gtggcagtta caaacccgtt
      301 accatatttc tcatcatgtg acttttcggt gcgttccttg ctggaagagg aggaggaggt
      361 gtgtgtctgc cctagatcca ggcctcgagc tcccttcagc gaggcacctt acgcatggaa
      421 taggaggttt cacccacctg aaaccttcta aatacaatat cagtggtgaa aaaccaaaaa
      481 caagagagaa aataaaacaa gatcattagt aagagttcaa caaagcaatt gcattttttt
      541 ggatatgtct taacacatgg gaatgaggat aatctgtctg taacaaggga gacatgcaga
      601 agggagaggg ttaatcgggc aattgcatac agcaggg
//
LOCUS       KCOD01003722             641 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 413754pyr ultra-conserved element
            locus uce-2869, sequence.
ACCESSION   KCOD01003722
VERSION     KCOD01003722.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 641)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 641)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..641
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="413754pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>641
                     /note="ultra-conserved element locus uce-2869"
BASE COUNT          171 a          145 c          132 g          193 t
ORIGIN      
        1 tttcctgctc tgccctccct aagatcattt aaagggatgg ctgttttgcc aaaccagaga
       61 gcctcagaaa tgcctcttaa gggagaatcg tgcacctgta aaatgaccta tgtgcagatg
      121 cccccaaagg tgatgagaag cactagcttt ctctggtgct ttgaagcagg ttcccaaaga
      181 gagatattta atcaaattta tgtttatttc aggcttaccc tctctagatc catccaacag
      241 ctctacaact tcttcttcag gtcctttgac aggcttttca gcaaacatac aaggagcacg
      301 ggtttacctt caagggccag cgcctgttgg gactcccagc tttaacagac agcatttttc
      361 accacatcct tggacaagcg caacaaattc atgtaggaac ttcatgggtc tgtcttagtt
      421 aactataaat tcatagctat ttagtagatt tctaacttga aatgcacaaa atgctttcca
      481 attgctttta gcagctgtga ggatggcgtg caaatcccaa gctgtgctat tttgtccact
      541 ggttctggtt gtaggctctg tgattacacc aagctaaaga ttcccctcgt agtacgagtg
      601 caatattagg tgaaaatgtc atgtttgcca tggtttgaag t
//
LOCUS       KCOD01003723             793 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 413867pyr ultra-conserved element
            locus uce-511, sequence.
ACCESSION   KCOD01003723
VERSION     KCOD01003723.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 793)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 793)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..793
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="413867pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>793
                     /note="ultra-conserved element locus uce-511"
BASE COUNT          245 a          159 c          157 g          232 t
ORIGIN      
        1 tatatttcac atactttaat ttggctgaca cataaaactc atttgacatt tttcaggtat
       61 ttctttgaaa ggatatttgg ttcttgttga gcgttaaggt atggaggtgg ggtaacctgg
      121 gtaacagaag gtcatttccg agtagattgt tgtccaagat cagctcttcc aagtaactga
      181 atgttttcag tccttctagt gacctgcaaa cgacaaaggc aacaggaaaa atgatactcc
      241 actaaatcag ggaggccatt atgagctgaa ataaatattt taaccttccc tttcaggagt
      301 gggaatagtt ttggtttggg cctgtcagaa gagtgaatga caagcattag tggcaagggg
      361 agtgctggca ctgcaacaca tccttcacat gctggcagga tgaaggatgc gggtcactta
      421 gtgagtagcc aggatccaaa acaaaaggct tcagatatgg ggcctgcagg atgaatttgt
      481 caatgtcttg tgccttcagg cacccagcct cgcctgaccc taacctccat tcccaagata
      541 aataactctg tcacagttca ccttcattcc ctggacacaa atttaagttg tcatccatca
      601 tttctgccaa gaaatatcat accctgctaa caataataaa tacaacttca agtatcattt
      661 cttagtagtt accttaatag gaaatgtaga ccttttttat taacctctga attagtttct
      721 tgagttcctg caaacaaaat aaaatgttct ctacaaaata aaatgcagaa ttactccaga
      781 cagaaaaggc att
//
LOCUS       KCOD01003724             504 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 413972pyr ultra-conserved element
            locus uce-2968, sequence.
ACCESSION   KCOD01003724
VERSION     KCOD01003724.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 504)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 504)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..504
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="413972pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>504
                     /note="ultra-conserved element locus uce-2968"
BASE COUNT          118 a          149 c          116 g          121 t
ORIGIN      
        1 gggatgtgtc actggagcca agcagccccc agcaaagtgc cattagggat gttctccaaa
       61 gcgtgacgga gctgggctgg ggtcaggctg gctctcagcc ttgcccagca agaagttggc
      121 tccttctttc cactcccaac ccatgtttga ttaataaatc atgcagtttg cccaagactc
      181 cctctgtccc cacccaaata caaacattcc ccgtcaccgc caccttgtgc ctggcaaagc
      241 tgctccctct gacaatcaat taccctccgg agatgaaatt attgtttaat ggcttttgga
      301 acaggctcct gctctgacat tcatcacaat caataatgca tcagcgggga caaaagaaat
      361 tacctgcctc ctgctaagtg aaagagtcca tttgtattcc acacggcccc ttcacgccca
      421 ctgagccggc tggatcgtgc tggcggcgcg gagggcggct gaactccaaa aagttggctg
      481 caacttcatc attggtgctg cttt
//
LOCUS       KCOD01003725             677 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 414079pyr ultra-conserved element
            locus uce-4871, sequence.
ACCESSION   KCOD01003725
VERSION     KCOD01003725.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 677)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 677)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..677
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="414079pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>677
                     /note="ultra-conserved element locus uce-4871"
BASE COUNT          131 a          149 c          233 g          164 t
ORIGIN      
        1 taagaaagat tcaaaaaaat ttgtcttcag tacaaaaagt cttgcgaaaa taaggctccc
       61 aaaatgctac aacgtgtcta gtgtatgtct agtgtactct gtgaaaggtt tgaattcaag
      121 tctgagttct cggagctgag ccccagttcc gtggcgcttg taccatggag gcctgccatg
      181 ccgggattgc tagcaagctg ggaaagcatt gcactctggt ccgggctggc aaagtgccct
      241 tgatccatgg ggttagcctg ggcagctacc agtcctggat gtggggagct ggtctgcggg
      301 gagacgtggt gtggagaagg ctgaggctgc atccgagggg atgggctgga atgagggggc
      361 tgggactggg gccgcggtga gggtacaggc tgcggagaac gcacttgatt ggtgagcgac
      421 gaagggagct gctggccctg gaggtgcggg gactgggcct gattggggag catgtgctgt
      481 tgggggctca taggattggg ctgagctggg gaccccatct gctgctgaag cagcctttgc
      541 tggaaagcct gttgcaaact ggctcctgtc tctgcactca tggcctgtgg aagctggctt
      601 atttgtccca tgtttccttg ctgcatctgc tgcatgtgat gctgcattcg ctgctgctgc
      661 tgctggggat acccgac
//
LOCUS       KCOD01003726             632 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 414190pyr ultra-conserved element
            locus uce-487, sequence.
ACCESSION   KCOD01003726
VERSION     KCOD01003726.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 632)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 632)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="414190pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>632
                     /note="ultra-conserved element locus uce-487"
BASE COUNT          212 a          105 c          108 g          207 t
ORIGIN      
        1 agagaaggta gaatgactgg ttttttttct agttgagtgc aagtttagtg ctaactagta
       61 ttttgaacac ttaccatgat atatcaaaca gcatgtgctt tctatttata ttggttacca
      121 atctcaatat tcagaggaag agtgtataaa gttaacaagc aattatttgg caaattagta
      181 ctcaacagcc ctgagtaaat aggaagtttg aaacctatct gttatacagc tactttaatt
      241 tgcatagcac actggtgtgt ttgctttgca aatactttgc aatgaatcat catttgtact
      301 atacagtcca aagaaaagca atcaaaattc acagcaagac aatgaaatta attataactg
      361 ttgaattctg tggtggtaat tcctcctcat gcaggaagat taattgcatt gcactttcct
      421 tgcactccac taaatgatct gatgaatgta taatcattta cagatttttc aaatgctgaa
      481 aattgattac ctttgattag ctctgatctg cacaaagagc tctgacagag tatcagtgaa
      541 acattacaac attacagaca aagtaacaaa tgatttaatt accagtgtgc ttattaatgt
      601 tagattccct gcagtgatcc tggcaaatca gg
//
LOCUS       KCOD01003727             639 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 414298pyr ultra-conserved element
            locus uce-2302, sequence.
ACCESSION   KCOD01003727
VERSION     KCOD01003727.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 639)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 639)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..639
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="414298pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>639
                     /note="ultra-conserved element locus uce-2302"
BASE COUNT          194 a          112 c          115 g          218 t
ORIGIN      
        1 tcaggtttgg acgtaaatag atgttattta atttctttta caacattaaa atcattccgt
       61 tttctttaag aacacatact ccagttctaa atgggatttc tattcataaa tttgcctcct
      121 caggccaaag atcaaaaatt agtgatggtc cacaacatac agagcttttg tcacattctt
      181 tcattttcag cataagaaat gggcaacttg ttcagggcaa atacttgttt gaactgagga
      241 ttttattatt aatctctgaa gactgctgaa tttagggtca cagtaagggt tgattaggta
      301 caaggtgcac aaagctctcc tctgtcaatg ctattgaatg aagcaagtaa tttagattca
      361 gaattggtct tggattgaag ctcactccat taccgaccat tttcaatttc agctatacaa
      421 taaacatcaa gctcagcaag gaaattagta catttggtaa tgtattggga gagatgggtg
      481 ggtctctgac aagatgacac ttatcaccaa agcttcagtt aatgaaaccc ttgagtggtt
      541 tctgcgtttg acatattttg acattttttg aaatcacatc cagctttttt taccccacaa
      601 tgttgttctt tatgagagct atctttaaaa tgagtactg
//
LOCUS       KCOD01003728             612 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 414408pyr ultra-conserved element
            locus uce-5766, sequence.
ACCESSION   KCOD01003728
VERSION     KCOD01003728.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 612)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 612)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="414408pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>612
                     /note="ultra-conserved element locus uce-5766"
BASE COUNT          162 a          132 c          130 g          188 t
ORIGIN      
        1 tataattgct gtcagctaat gcctgataaa ccctgcctaa attgggatat atctatttta
       61 ttatatatct atatttactc taacaaaagt tagacaaact tgtccaaaag accaggggtc
      121 cattttatgt gcttgggtgt ccaagcacct gccagctgtt tgtcccttga attgaggaca
      181 tcatgttttc aatttccttc aataaagcta tgaatctggc aatttgctgg cctgcttcag
      241 ctaaacagaa aggacaattt gagaaagatc atagttcagg ctcagtcaga cggaaacgat
      301 tgaaaacaga gagctggctg ctatgtttcc ccaatgcagc ttgctgtcgc agtttgactg
      361 acaaactgac ttttttgagg tgctcatgcc catttcagtc agagtttatt gaaggtgatt
      421 ttgatcttct ccatgaggcc acagcagcgg ccatgccatc tgtcaccttg attgcatcgt
      481 ggattctctg gagagagtgc gatggctcct gatcatttac agattgtgct gctttcgcct
      541 ccataaggac cacatgcaca gagccagatg gtgaacatac acgcttatta taagtcttta
      601 tctctgtgca gg
//
LOCUS       KCOD01003729             695 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 414518pyr ultra-conserved element
            locus uce-1816, sequence.
ACCESSION   KCOD01003729
VERSION     KCOD01003729.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 695)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 695)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..695
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="414518pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>695
                     /note="ultra-conserved element locus uce-1816"
BASE COUNT          154 a          197 c          151 g          193 t
ORIGIN      
        1 ttagaaacca gcaagttttt gtcaccgatt tctgcctcca tctcccctgc gagccttcag
       61 agaggaaaca gggagcaaca aggtcctggt ccaaggggct ctcaatcctc gaaatggatt
      121 ttacctgtct ctgaaagctg cctccatccc ccactgcttt ctccctaggg aaatcagcct
      181 aaaaggggct aatggaacaa tgtccctctc tctccctctc attttctctc ttttttttta
      241 ttagcatttg tggaatttat tcccaaactc tcctaatctt tcgtacacaa ccatttgatt
      301 tgcataaccc agccccctct cataaaaact ggctgctagt ttaattaaaa aatgtaaatt
      361 tgctgtcatc tcggggccta gtgaattagg acgacatcgg cattttttat tgctgaagac
      421 gtccaaattg atccagtccg cattgaaccg gaggggagga gacggtgccg cgtgggactt
      481 ttggctggag gttctgcccc tcctctgctt ccagccaagc ctcctctgcc ccctctttgc
      541 ttcgccaagt gcagctgagg acgaggacat tggttctccg aaacctcagc tggatcggct
      601 agcatggcct ctgcaatgtc agcacttgtg ggagctgagc cctgggtggc acctgagttc
      661 tccaaacctt gggaacggct gcaccttcaa accct
//
LOCUS       KCOD01003730             811 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 414628pyr ultra-conserved element
            locus uce-5638, sequence.
ACCESSION   KCOD01003730
VERSION     KCOD01003730.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 811)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 811)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..811
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="414628pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>811
                     /note="ultra-conserved element locus uce-5638"
BASE COUNT          232 a          146 c          168 g          265 t
ORIGIN      
        1 aattgggagg gaggaggagt ggagtcacat ctcccaaatg tctacatcag acaatgttat
       61 tgagtcatga aactactaga gcacaagaca tggtgtaact tcagtcccag ctttttagtt
      121 tattcaaatg aaggaccctc aaatggttta gttaggaatt aagttaattg ggtttggtgt
      181 aaggttggtc tacttcctgc tggaaagttt cccatatttc ctcagtataa gtagcggctg
      241 gactcccatg tcaccctgtt agcccagact ttaattagtt ctggcattcg cctcataatg
      301 ataaatgctg agatgatgaa tggaaatgca aatgagtgtg aagtggctca gccatcagtg
      361 ctgaatatca ttaatacctt cctactgtta aatcgatcaa tgtcatccca ggatccctct
      421 gttcagcggg tgcagatggc tgtccgccag aatgccttcc attatattgg cagtgaaaac
      481 tttgtgggtt tttcctcccc atatgctttt attcatcttt tgctgaatat ttgtttggca
      541 actagaactc taatatattt ccagctgaga tgataactat ttagggtcaa taagcgagtg
      601 gctaatttag agcaaaatat atacgaatat ggatctcttc tcacatcagg agacaaatat
      661 caagtgcata ttcaataaat tggagagcag tagtattttt cagggtgcaa aatttcatgt
      721 tgtagcaaca aaattattca tttctcagtt gtgttgcttt ttgtatttta caatgtttgt
      781 cagcatgtcc acagaactaa gtttgtaaga a
//
LOCUS       KCOD01003731             431 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 414737pyr ultra-conserved element
            locus uce-4778, sequence.
ACCESSION   KCOD01003731
VERSION     KCOD01003731.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 431)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 431)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="414737pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>431
                     /note="ultra-conserved element locus uce-4778"
BASE COUNT          123 a          113 c           86 g          109 t
ORIGIN      
        1 ggcagagccg gggttcgcag ccgcggccgt gaaccttaaa caaacttcca gcagcatttc
       61 cgcctgacat ttttctttat gtttcgtcag tcatatctga gcgatcagac agccgccaca
      121 cgtggtacac ccaccaggat tattatctcg agcagaggcc cagagctcat tgtagcaggc
      181 atgtaattct ttacaatgta tgccacgtta agtgtgttgg gttatctatt caacagctga
      241 ctgagccagc tctcctcaac aaccatgtaa gaagcgatga caattgtact acttcataag
      301 ggctgcatgc aactctgaca cacacttcac agcaaccagt catctatata aaccaatttc
      361 aagagcaaaa ttgcatggtg cctccactct gttataaaca caatgatatc cactcagagc
      421 tgataaatgc g
//
LOCUS       KCOD01003732             616 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 414845pyr ultra-conserved element
            locus uce-7587, sequence.
ACCESSION   KCOD01003732
VERSION     KCOD01003732.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 616)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 616)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..616
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="414845pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>616
                     /note="ultra-conserved element locus uce-7587"
BASE COUNT          154 a          153 c          160 g          149 t
ORIGIN      
        1 ttttgcacat ggcttttttt ggataacggg gctgatggag tcagcatctc accagcaagt
       61 cagcagtaga acatcgggct cgggctccag cgggaagagc aggcgctgtg cagcattccc
      121 ctcagcaaat atttatgctt taagctttct tgcttaaagg cctaattgga gtctaggtga
      181 gctggcacac tagaagagag cctaatagag acattgcagt gctattagca cagatggttg
      241 tcatatgtat gcaaatgagg agcaaattga atttggtgtc ccctctcacc agctgtccta
      301 tcagcactgg ctcctgcagc agcaaaaggc actgccactg ctctgctaat ctgtcatcgc
      361 agattaatta caactaacac attaatcttc atttgtttcc ccatacaaag gaagcctgtt
      421 ctttcaagta cactctgatg ggatgggtgc tccaacctgg gaaaagaaaa aagaaaggga
      481 aggagggcca gccagcttca ttagtgccag ccccgggggc tggggctgct ggagccttag
      541 tggggctttc gtgctccttc tggcaaacca gaccccacta ctgggagcct cagccacctg
      601 ccgggagctc ctggga
//
LOCUS       KCOD01003733             292 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 414950pyr ultra-conserved element
            locus uce-2715, sequence.
ACCESSION   KCOD01003733
VERSION     KCOD01003733.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 292)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 292)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..292
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="414950pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>292
                     /note="ultra-conserved element locus uce-2715"
BASE COUNT           87 a           52 c           43 g          110 t
ORIGIN      
        1 cattaccccg gcataaaaaa gtgagttagc aacagagatt tagctttaac tctgaatttc
       61 ctgggttttt caagctcaaa caagaccctt aatgttgctt taatgtagtt tttggtggta
      121 taattcttct taattctgtc cattgcagtc ctttgatact ttatgaatta cttatctcac
      181 attaataagg cttaacatgg agtattaacc tcctatacat tcctaattag tttttaatga
      241 attttagttt ccttgttaga aaaagagcta gctagctagc taccacaaat tt
//
LOCUS       KCOD01003734             300 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 415053pyr ultra-conserved element
            locus uce-2154, sequence.
ACCESSION   KCOD01003734
VERSION     KCOD01003734.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 300)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 300)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..300
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="415053pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>300
                     /note="ultra-conserved element locus uce-2154"
BASE COUNT          114 a           53 c           41 g           92 t
ORIGIN      
        1 gtcacaaata aattaagctg atttactcct tctgaattat gttatgttta ttgatgcttg
       61 tataatttaa tttcacacaa attccattaa agattatgcc ctctatcaca aaatgcttcc
      121 agtggggaaa tataatcagg ttataataga tttgtgtgtt acattaagat gacaatagtc
      181 tagtaggtcc actgtaataa taaaacagaa cacaaacaag ggataaaatc aatgtcacac
      241 aagaaccact gcctagctaa ccagcagctt ctattatcat agattaaata aaaacctcac
//
LOCUS       KCOD01003735             692 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 415164pyr ultra-conserved element
            locus uce-2387, sequence.
ACCESSION   KCOD01003735
VERSION     KCOD01003735.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 692)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 692)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..692
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="415164pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>692
                     /note="ultra-conserved element locus uce-2387"
BASE COUNT          221 a          140 c          131 g          200 t
ORIGIN      
        1 aactcctggc acttctagat gacaaccagg aaaagcttac tctgcctgaa aataacaagt
       61 ataacaagaa gtcttggctg tattaccact ttctaaaatc aagaagaaag gtatctgctt
      121 acctgaagga ggagttttgt cctacaaatt taccaacttc caaagcttct tgtgtcctct
      181 ggagtccata gtaacgtgaa ttgtctttat ccaagtacct agcaaatcac tgtcacatag
      241 cagcagtcga cctttctgtt caatcttttc aggagccata aatcagttga ctttcaagct
      301 cgatgagatg gcatatgccc tggtttgaag aacagatgga ggcttggggg aaaattgttt
      361 ctgcaggctt actacaagca gcactgctcc ataaaagtga accattcaca ctaatttctc
      421 acataaatta tacaggcagg gagcaccagc ccattcagca gctttcatct agctttcaga
      481 ggtcatttag caaatttaaa ttaaagttat ttctgataca tggctgagtt ttcattccat
      541 acactttcaa gagatggcaa attacatcaa ataaaggaat ggctttaatt gtgtattcag
      601 ggggaacagt aaattaactg ccacagtatt actgttttct agaatcctgg gataagttgc
      661 aactattaat tagccacaga ggaatcaagg aa
//
LOCUS       KCOD01003736             736 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 415275pyr ultra-conserved element
            locus uce-419, sequence.
ACCESSION   KCOD01003736
VERSION     KCOD01003736.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 736)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 736)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="415275pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>736
                     /note="ultra-conserved element locus uce-419"
BASE COUNT          209 a          144 c          141 g          242 t
ORIGIN      
        1 tatactgtta tccatattac gttgtttctt atagattttt taaaaaaaat gtgaaatttt
       61 tccacactat gtgtgttgtt tccatagctc ttcacttcct ccagaagcct ccttacatta
      121 aaaaagaagc cttacactta tcctgcaaat gacagaaagg gcttatttgc aggattttta
      181 gagcattaaa ataactatgt caggcagaag aatctttctt ctatcctagg atttcagcca
      241 tgcgcagtct ttcttccctt tctctccccc gtctctcttt ctagcctggg gcgtgaattt
      301 gcatgtctaa ttcatttact cgccatattt gaattggcct gaacagatgt aaatcgggaa
      361 ggatgggaaa aactgcagtc atcaacaatg attaatcagc tgttgcaggc agtgtcttaa
      421 ggagactggt aggaggaagc atggaaacgg aaaggcagtg tatttgaagc ctaattgtca
      481 catcagagca tccttgtccc catgcaacca ccaccttgta catcacttcc tgttttatgc
      541 agctcaaaac atggactgaa gatttttact atgttgactt tctttctggg caagacatcg
      601 gtcatgtgtg caccatagtc ccatcatgga gcatttatgt atacattgta aataaatttt
      661 gtgcaaaaag gactggaaaa atgatctgta ttattgcaat tttttgtaaa agtagcagtt
      721 tggtatgagt tggcat
//
LOCUS       KCOD01003737             753 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 415387pyr ultra-conserved element
            locus uce-183, sequence.
ACCESSION   KCOD01003737
VERSION     KCOD01003737.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 753)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 753)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="415387pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>753
                     /note="ultra-conserved element locus uce-183"
BASE COUNT          245 a          141 c          138 g          229 t
ORIGIN      
        1 tttgaaagtg caattttcca tctgtcaatc agcccctcaa ggtccccagc caccaaccgg
       61 ggaggctcga ggtgaggtca cccctgtctc ctgccttcca tttgatgggg cacccggcct
      121 cattaatcaa gatcctgctc aaagtttgga ttggggaggg ttgctcgagg aatattttat
      181 cgtcttttcg gcgctatcga taatttatat tctgaattaa aataaatagt ctccttttaa
      241 atagaatttg attagatgac tacaaaatct attcctcttg ttatggtaca tagcagatca
      301 tttcctagag cctgcctcag aagaaaatgt gtggtatttc tggcattaat aatgtatggt
      361 caccaaaacc cattctggcc atagcttcga gatgcttcaa aatacagcca attaaggttt
      421 atttaattat taaggttgaa taaataacag cgaaacatgt taaaaatctt tcagtttcag
      481 tcaatcataa taaaaaatta atgagactgg atagagagcc ataaaaactg atagactgca
      541 atcgtgaatt ataaattggt attgattttt tcctttgcaa taacactctc aggtaatcgt
      601 atgttgccac atgtaaagtg cactttcctg gttgagacta atattaacta tcaaatatat
      661 atgagatgga ggcatttatg acacttcaga tttcacaaac aaaaagaaaa aaaacacaat
      721 ttgtggaata atagcggcgc tgaacacaga atc
//
LOCUS       KCOD01003738             366 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 415493pyr ultra-conserved element
            locus uce-2818, sequence.
ACCESSION   KCOD01003738
VERSION     KCOD01003738.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 366)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 366)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..366
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="415493pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>366
                     /note="ultra-conserved element locus uce-2818"
BASE COUNT           90 a           75 c           92 g          109 t
ORIGIN      
        1 cccgtgctcc cgccgtggag ttgcagctgt gttcaccagt ccgtagtgtg tgatgatgaa
       61 attgttcatt gtgaatagaa tcaggattat aaactaattt ttaatagaag aagagaagaa
      121 aagtatatac ttaaaatgta tttatggctc agatgtactg taattcagat ttattgtacc
      181 gcttccttga tttttaacta tgcactgtaa tgaggcactt gccactcagc aaatgggggg
      241 tcagagcagt catggagctg acattgcctc ccctgctggc aaaccggggt gctcggtggt
      301 tgccccgggg tcacccactt tgctgtcaaa gccattcttc cttggtgggt gatggacagc
      361 tttgca
//
LOCUS       KCOD01003739             359 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 415598pyr ultra-conserved element
            locus uce-1742, sequence.
ACCESSION   KCOD01003739
VERSION     KCOD01003739.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 359)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 359)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..359
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="415598pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>359
                     /note="ultra-conserved element locus uce-1742"
BASE COUNT           96 a           64 c           79 g          120 t
ORIGIN      
        1 tgtaatttta aagcaagttg tgttgcacct aattattttt tccatccctc ccgacattac
       61 cttaactgca aagctctgta gtttgcctgt catttttaat caggttgttt taggtaattt
      121 ttgttatgcc cctcattact gaattgttta tcaataggtg caccaagtgt cactagcttt
      181 tctcatcaag ccaggtctga caaagagctg cagtgcatgg gaaagaggca gctaggtgaa
      241 actaatgcca tagatgtttg attcattagg agcttattgt taacggggat gtctgattgt
      301 aaaggctcag tcaagcaaaa gagtgcagag taatcagtcg gatttatagt ttgcagggc
//
LOCUS       KCOD01003740             612 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 415705pyr ultra-conserved element
            locus uce-1909, sequence.
ACCESSION   KCOD01003740
VERSION     KCOD01003740.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 612)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 612)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="415705pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>612
                     /note="ultra-conserved element locus uce-1909"
BASE COUNT          175 a          118 c          141 g          178 t
ORIGIN      
        1 aattcatttc atctcttttt caagcctgag tctttcatac ataacatcag gcatgtcata
       61 tctgaggaat tattaaaata agacggagcc tgctgtatct gagcagaaaa gcttctttga
      121 gctggcgtcc tcaggagaga agcaagctca atctcattag ttggtgctga gaaggcgtcc
      181 tagtcactag gttcaaggtg atgaaagatt agggcgtttg gcctcggctc attctgtatg
      241 cagctcacat cactccctgc ccgtgaacac gaaattacat tgaacctggg gagtctaact
      301 ccattaattt taaatggaag attaatttaa caatatgcgg cagatatttg ttacaaacct
      361 atcatgtaaa agtgacggtt agcaataaat tgtggtgact cacactggcc ggtggccctg
      421 gctcaaataa atcagaaggc atttacacat aattgctgtt tttaaagaca gggatatggg
      481 agatatgttt ctttgatgaa agattgggta actccattca aggaaacagc agcccatgtt
      541 aaagctacag cgtctctttt gagggagatg ttccagggcc tgcaggactg ggatgcagtt
      601 attgtctgtc tt
//
LOCUS       KCOD01003741             401 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 415816pyr ultra-conserved element
            locus uce-4025, sequence.
ACCESSION   KCOD01003741
VERSION     KCOD01003741.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 401)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 401)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..401
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="415816pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>401
                     /note="ultra-conserved element locus uce-4025"
BASE COUNT          137 a           64 c           84 g          116 t
ORIGIN      
        1 aaaaaaaatc agggtacggc ttattagttt tctcttcgct gcttcttata aaggtttatt
       61 tgacagagca taagatagtg gtaaaatcct aaggtaaagg ttaaactctg ttttattatg
      121 tttacaggat ttaaagggta aatcaggaag tgcttattta acatcaagtg aaagtggtgg
      181 attagtaacc agaccgagac ttaaaagcat ccttaatcct taagatctct gagggtgaaa
      241 ggtcactctt taacaccagg ttgtgtaaag aatgaagcag acagaagctt ctgtttcatc
      301 attgcccagt taatccactg aggaaatgag cagcattggt tttttgctag gtaaactcct
      361 cctaaaacca aggaaacata ggaaagcctg aacaggaaat a
//
LOCUS       KCOD01003742             781 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 416040pyr ultra-conserved element
            locus uce-3959, sequence.
ACCESSION   KCOD01003742
VERSION     KCOD01003742.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 781)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 781)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..781
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="416040pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>781
                     /note="ultra-conserved element locus uce-3959"
BASE COUNT          253 a          121 c          138 g          269 t
ORIGIN      
        1 atcaccataa tgtattggaa gcatcagggt ttataaataa aacacttaca tatcctgaaa
       61 tgcaaatatt tattctgtgt gtgtataact ataatatgcc catgatagct gataattttt
      121 tgattctctg tagtctcatt taagtcatat ttattctctt gcatccatgg tcttcattca
      181 acactggaca tcttagtgag ctgtagtaca aggttttttt tggttttaac cttcaaagga
      241 atttagttga gcagatgcta cattgaacta gtcagagtcg aaaggaaatg atatggcttt
      301 taaagggcac atctagcata tctactgggc taaagtaatt ctggcaatgc ttcaaaggat
      361 ataacttttg atggtaaagt aggtaggcta cagaatgaaa tcacatatgg caagctgtca
      421 aagtcttcct acacattcag tacatttata taagtgcaaa tggatgctgc ttagatggag
      481 tccctagcaa tttcctgtta aatctgctct aagattatct gatattattt gactaaatta
      541 tctgtaaaag ctgtggacaa cttttatgat caaatattta gaaattagct ttttggcaga
      601 ttatctgaaa aatgaactgc aattgtatta acacttgaaa gcaaagggct ttcagtaata
      661 gcaattatat caaaacaggg ataatgaatt gctgtatatc agcttgaaga ggacgtattt
      721 ataggtcaat gatgtcaata gctatagttc tcatagacac ctcatttctt acccttttat
      781 t
//
LOCUS       KCOD01003743             732 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 416150pyr ultra-conserved element
            locus uce-853, sequence.
ACCESSION   KCOD01003743
VERSION     KCOD01003743.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 732)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 732)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..732
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="416150pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>732
                     /note="ultra-conserved element locus uce-853"
BASE COUNT          234 a          117 c          118 g          263 t
ORIGIN      
        1 taacaaacta aatttggaat tacttgtttt ctagctttaa atgcctgctt tatttctttt
       61 tcaagagatg cctaaaatgt tttttatata aaaatgaacc caagcctgtt ttaagatttt
      121 ttgtgtaaga ctttaaaagt tgtattaata acttcttgtt gttaaataat ataaaagtta
      181 acaaactaaa ctgttacatg aatcatggtt agtatccact aatgatgtta atggaaaaaa
      241 atgctttaga acaataaatg gattttaaac tatcctttaa gcttgatctt gctaaacaca
      301 aactctgatt gacttgtttg tattagcatg tctctcgtga gaatgtaatg gagtttaaag
      361 aggtaagatt accacttacc actgttagac tgtctaaatg ctagttcttc aacctttgag
      421 tttccccgca cattaaatat cccattaagc attgcataga ttcacctatt tgttttcact
      481 cagaagagtg cgttgactgc atttttcgta gtatataaca atttgtcttg ataaaccaat
      541 catcagtgtc actgcccagt tgttggtact caacttcaaa aactttattt gtaattttca
      601 gtgctaaata tcaccgccct tgaaggcagt ttagagggct gatatttctt ttgagactat
      661 cagacttgat ggctgatgat tattaaggaa atatgtcgca ggactcaaag gatgactaaa
      721 cgttaaacag gt
//
LOCUS       KCOD01003744             650 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 416259pyr ultra-conserved element
            locus uce-181, sequence.
ACCESSION   KCOD01003744
VERSION     KCOD01003744.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 650)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 650)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="416259pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>650
                     /note="ultra-conserved element locus uce-181"
BASE COUNT          178 a          140 c          156 g          176 t
ORIGIN      
        1 tttttccagc cattccgtaa taggacagta attctctagt ggatggcagt gcccactgtc
       61 tgaagagcgt ctgaggttct ggcacgctga ggtcaccatt taccaggctg aagttactgt
      121 ccaggttgct tggtgcttcc ctgttagaat tcagtgtgcc agacccatgg cacccctgtc
      181 tttcatgaat ggaattcaaa aagacactta gatttccata aataaattag gaattcagtg
      241 gcttcttctg gctaatcagg gcaggctgat aaaccttgct agctgtttaa taaatgaatt
      301 gtgactgatt acctattaat atggacgcct caggaattca ccctggggga agcagagcag
      361 tgaaatagag aggggcatgg ccccctggga aatcagggct tcatgtttgc agcttaaata
      421 tctctgtgaa gtatcaataa ggaggtaatt gaattttgaa cacaaacatg agcaccggat
      481 ggatgaagga gaggggggcc ctgatcatct cttcatgccc cttcatactc ccctcccctt
      541 ccccttagag accactctag tgaagataga tgctaaatcc attaaataaa gattagactg
      601 tgtcgtggta gaaaatggca gcttagctag atccctgggc aaattgggac
//
LOCUS       KCOD01003745             617 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 416369pyr ultra-conserved element
            locus uce-1484, sequence.
ACCESSION   KCOD01003745
VERSION     KCOD01003745.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 617)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 617)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="416369pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>617
                     /note="ultra-conserved element locus uce-1484"
BASE COUNT          186 a          130 c          109 g          192 t
ORIGIN      
        1 catagggtat gactgatatc tgcaaacaaa accaaagccc aaacttccca gtttgggtat
       61 gaaaaggtga tttgagtgag ttactgaaaa atatctcatc aatatcctac ttttacgttc
      121 tgaggcactg aaatgtaatt atgagaaata aaataaggat tttcttagtt acaattcctg
      181 gcctttcact gattgcagta aattataaat tatgcagtca atgtaggcca acaaaagaag
      241 acatcttcaa atctcagtca aaggtaatta cttaagtcgg ctgaatgttc ccttttcata
      301 gagtgtgatc tctctttgac agctcacact gacagatgac cttctcagcg acgttcttat
      361 ccttcggatc atgagcagtg tgcctctctc cctgaatatc tctatatatt tgtgacacta
      421 agctttcaaa tacagctatt gacaaatcag aacatcagtc taagtgctgg tcttcctatc
      481 actcacaata aagtagctat cacttgtggt gttgtagagc aagcacatct ctgaaaaatg
      541 agttctcacc aagtgctaat ttgacacagc tcgcttgcct tcccataatt gctctgtcat
      601 tgtcagttgg cagttcg
//
LOCUS       KCOD01003746             512 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 416477pyr ultra-conserved element
            locus uce-2579, sequence.
ACCESSION   KCOD01003746
VERSION     KCOD01003746.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 512)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 512)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="416477pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>512
                     /note="ultra-conserved element locus uce-2579"
BASE COUNT          165 a           98 c           82 g          167 t
ORIGIN      
        1 caggtatagt cctgaatttc cctttctgac ctgaacagtg tggctagcat ggcatgggag
       61 tgatggggaa gagagaatat gacatagaaa ggaacgcaca tttcaacatt tgatgaactt
      121 gagcgtgaat gcctacacat aatgctcata tcaggaatac cacctgcatc taactttctt
      181 ttaaattttt gtttataatt ccagtttgaa atcaagaaca tctacaaccc caagcatcaa
      241 tgcccttcaa tatctaattt cacagttttc ttaacacata tctcatgtta tttattatag
      301 tcagtgtcat cccaacacct ttgtctgttc ttgctacatt ttaaatggtt tagctggcaa
      361 gccatcaatc ataaatcatg agacatattt taacttcaac taagatcagt ttagaaagaa
      421 aacaagtctt ctatggccta aatgtgtaca ttactcacat ctataagtga taaatgcctg
      481 ttctggaaaa agttttggta tatatctata ga
//
LOCUS       KCOD01003747             894 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 416693pyr ultra-conserved element
            locus uce-255, sequence.
ACCESSION   KCOD01003747
VERSION     KCOD01003747.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 894)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 894)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..894
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="416693pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>894
                     /note="ultra-conserved element locus uce-255"
BASE COUNT          296 a          173 c          171 g          254 t
ORIGIN      
        1 aagactccaa atattgattt taattggact gaagtgctgc aacattatgc ataaagcttt
       61 agtgaagtgg caatttacct aaggggttta ctgattgaaa agctctcaaa cctgaaatca
      121 ctagagaggt agaaagaagg gactctctgg ggtggggtgg agggtagcct ggtaaaacaa
      181 atccctctca aatctgtagc agatgttagt gtagaggaag tcaattcagc aaggtacaat
      241 cagctttaca aaaattattc tgttaaaaga gaacgggctc ttgaaagagc taaatgtgtt
      301 tctgttcgtt tgctgtacta aggaatcttc aaggagactg gtgttgcaat tacaactaat
      361 cctccccaaa aaattaactg tgttgaaggc tttgtaattt ccctaggtac aatttagctg
      421 tcacttactt taaaatttac tcaaacatgc gttcggaaca gcactaactt cacatgtcaa
      481 gtgctttcca gccaattgag tctaaactgg aagtcggtgt taaacaactg aatgattaga
      541 caagatagct catttccctg ctcttttgtt cagaataaaa tgccacattt acattatcag
      601 actcaacagg attttctgac agagggagaa aaaaccctag tgaacactgt ccatagcaag
      661 cacatgaagc ctgtcattta ccaatcatcc ttcaaaaagc aatagccatg aatgtaactt
      721 aattacgacc caatgatcct tgacgaaaaa tcatcttatc actgtcctgt ccccataggg
      781 caaatgagac acttttgtcc tttggcactg atgatgctaa attcctaatt gcaataatgg
      841 agtaaaagag ccaaacatct ttcattgcaa ctgaagagtt ttaataaagc cact
//
LOCUS       KCOD01003748             783 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 416803pyr ultra-conserved element
            locus uce-3897, sequence.
ACCESSION   KCOD01003748
VERSION     KCOD01003748.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 783)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 783)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..783
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="416803pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>783
                     /note="ultra-conserved element locus uce-3897"
BASE COUNT          260 a          171 c          120 g          232 t
ORIGIN      
        1 gagaggagaa attttattta cctattcagt gctatagcag cagaatatac atacctcatt
       61 actccaaaac actgagcttc aaatgaaata gtccacagct gctgaagagt tagctgagtt
      121 tttaaaggtg gtacagtaaa gtttaggtaa acaagcattt ggttactctg atgtgcaaag
      181 accttggttt acttgctagg tgtgatccag acacagccag tacaaaccaa tccacattgc
      241 cctaccgttc acctcaacct tgacctggag attaaactca cttttattgc acacaaaggt
      301 catctgtgtt aggtcaaaat tcaaagtccc ttgtcagctg aggttgatat attccaacct
      361 ttcctactct aatgcatcaa atttttcatg gtgaggtcat attcagcaga cagcgtattc
      421 agcaatttat cgtgccattg taatatagcc ccgaatacga ttgtccaaaa aacaatgcat
      481 gaataaaata ttttccattc tgatgtagca aatcccctat cctcataaaa ctagagccta
      541 gacttgtttg caggcttcag aataacgata cattttctga aatacaatca agaattatca
      601 caatattcct taaatacaag caacatgaat ataatggtat cctaaaatcc acaagtcaat
      661 taaaatacac atatggtcag agttaaaact tccacttcat ccttccttaa caaccaccat
      721 aatcttgccc ttaaatctac agacatctgt tggtctatct gatgacacca agcttgcttt
      781 aga
//
LOCUS       KCOD01003749             610 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 416914pyr ultra-conserved element
            locus uce-4548, sequence.
ACCESSION   KCOD01003749
VERSION     KCOD01003749.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 610)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 610)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..610
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="416914pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>610
                     /note="ultra-conserved element locus uce-4548"
BASE COUNT          198 a          105 c          107 g          200 t
ORIGIN      
        1 atagggtaga atcctctttt ggttttgaaa gcaagttact cctgaaggag atgtaagtgt
       61 aaattttagc tttcacctaa tcctgagtgc attcaaaatg tttatgcact gcaatccaga
      121 gccccatggt aaacattacc taagaaaacc agtcttttaa catcttttaa attagttgct
      181 tttatttctg aaaagctaat atccaaacta gcaacagtaa atatgtccag gtttcatgaa
      241 atatatttca taaattagct tatcattgca ctgatttagc atgcctagca ggtgaaagac
      301 aaaaacatgt gttatcttcc ctagggaacc ttcaatgaat gtcattctag cttcatatgt
      361 ctttcttctc tccccttctt gaactgatat aaaattctaa tgtgtgccct ctggttccat
      421 cttcattgaa atctagcaaa accgctgaag gtaagatagt ggcaatggtg catgaaaaaa
      481 gggaaaagca atacagtgat tcatagcata cttgaagaaa gttgcagttg ttaacagtag
      541 tacttttgtg tgtagacagg taaaatgtgt catatatcag tgttaaaaat aaagttattc
      601 atcttggcta
//
LOCUS       KCOD01003750             332 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 417016pyr ultra-conserved element
            locus uce-2384, sequence.
ACCESSION   KCOD01003750
VERSION     KCOD01003750.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 332)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 332)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..332
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="417016pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>332
                     /note="ultra-conserved element locus uce-2384"
BASE COUNT           90 a           67 c           75 g          100 t
ORIGIN      
        1 cagggcagga cctcctgggt gacagagctg gaggggtcac cgagggaaca tgctgggatc
       61 cttctcttca gcccttgtaa tggcgttagc aatgactgtt tcttactcaa tcatactccc
      121 aaaggatttt caataaactt tttatgtgcc ataactgtta cattaaataa agctgaaagt
      181 attgagtaaa ctgactgtaa atcactttag atgccttgga attacattaa gtgtgagaat
      241 tatggatctt ttgctgcttg cagaaacaga gagacgacag agccagaaat ttttatgctc
      301 ccttttctta tgtcctcctg tcagcggcgt gg
//
LOCUS       KCOD01003751             816 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 417127pyr ultra-conserved element
            locus uce-52, sequence.
ACCESSION   KCOD01003751
VERSION     KCOD01003751.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 816)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 816)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..816
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="417127pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>816
                     /note="ultra-conserved element locus uce-52"
BASE COUNT          244 a          152 c          171 g          249 t
ORIGIN      
        1 cctctcctgg actggacatg ggcaaagcta aaccaactgg gaatgcctcc acagaagtgc
       61 tgatgactct tgctgctgat attctagaga gattttatgt tatccatctg atatcttaat
      121 aacatgaaat catttaggtg caaagcatac aaaaagttgt gagtgcaaga aacagtccta
      181 aagtacctta atccttctat cgatagcccc actattgggt tacacggttt taatcccaga
      241 ggagttgttg tctgacatta aactgtccaa atagtattta tatctgctgc tgccctgcaa
      301 gatcacttaa ccctgcagag cagtttaaaa gtagttaatg acagacccag catgacttgc
      361 cccttatgaa tgatcacata agttcgacct gtgctgtcat ggtttatgga ggaaggcagt
      421 ttgtccatag cctgcttcag ccacagcagg taatttgaaa tgaaatgaga cagtttctac
      481 aagcagattg atttgggaat cttgcctgtt cttccctttg acccttgaca agttgacact
      541 acaaagattg tgactttaaa aaatgattgg gtgcaaatac atttaggtag atgatttact
      601 atgtgttaaa gcaaggacag tgcatttaga atggagctgt gagggaaggt aattgtaaac
      661 tttaacaact cgtgttttat gtttctgtat cttattaatt atctgagtag gtgaatcttc
      721 tgatagcagg agaccaagta ctgtacctaa taagctgtgt gtgagtccac agcctctgca
      781 taccagtagt cagtatttta gtatgcagaa ataaat
//
LOCUS       KCOD01003752             700 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 417237pyr ultra-conserved element
            locus uce-7004, sequence.
ACCESSION   KCOD01003752
VERSION     KCOD01003752.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 700)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 700)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..700
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="417237pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>700
                     /note="ultra-conserved element locus uce-7004"
BASE COUNT          204 a          126 c          127 g          243 t
ORIGIN      
        1 gtgcttgaaa acccggcaaa taaggaagat aggatcatat tctgatgctc agagtatttg
       61 gaagtttcag ctgctgtact ttgtgaatgt atgttttcgt tagctttgga gttgccattc
      121 tgaatcgagt actaaaataa atacagtttt actgccaaca gagacaacgg aggaaaaggc
      181 aatacagcaa catggcaact ttcaatcact tcctgacttg ttaatgaacc tcttttctaa
      241 ctgagacttt gcttttgagc tacggtgttt tccccaagcc attttataca atgagatggt
      301 aacagttgtt tgtctgataa agcacgtact atttagaaca cagatgtttg attattattt
      361 atttctctct gaagcctgct aattcagtcc caaatgatct ttttttttct ttttgcttaa
      421 atttaatttg gaatgtatgt tgttggtaag tgacagatag tttaattatt aataggatcc
      481 cgcaatgcaa tgcaccatag ttttaaagtc atctggggcc aaaacaacac tacttccttc
      541 cttccttatg cttctgggat tccttgaaga atgcaaaggt aattacaaaa ctcatgacaa
      601 atctgcatgt attatgtcct ttcctcaaca tttgtgcttg cctatggttt tacaaagtac
      661 cattcttact atgaaatggt aatgaatcag gagagacttc
//
LOCUS       KCOD01003753             663 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 417343pyr ultra-conserved element
            locus uce-2385, sequence.
ACCESSION   KCOD01003753
VERSION     KCOD01003753.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 663)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 663)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="417343pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>663
                     /note="ultra-conserved element locus uce-2385"
BASE COUNT          164 a          136 c          122 g          241 t
ORIGIN      
        1 ttcaacaaac attttcattc atgtttatgc tttgctgtta agatctgtat atggtggtaa
       61 tgccaaaaaa cctttaaatt ctgcacagct gtagttgtac cctttcttcc ccagtgtact
      121 cctctcctta ctcattcaaa tgtacctttt attcctaaat ctctctcttg gttgtggcac
      181 agtcctaatg tgcacctgat ttgatgagat ttcaactcct gtccttctgt gtgttttcgc
      241 agccatgccc ggttacgctg tatgtgcgcc tgcaacaggt gtacattttg catctgtcag
      301 aacttcctca actcagactt gctgcaatct gtaaagaaca aactcttcac tgcagttctt
      361 aacaggtcct taactttatt tactaggtac caggtgtgca aagggtgtca aaaagcaatt
      421 ggtaactata tactgcagat ttttcactcc atatccacta aataggccaa tactttcata
      481 gaattatcaa acttggttta acttgagctt agttcagtca tttttctgat ttggttgttg
      541 attcaggctc ttgtgattgc agaaatactg tgcaggaatt aggtgttttt agggaactga
      601 gtgtctacaa atctgtgtaa tgtttcacat tacaggtttg tttagtggta gtgcctttga
      661 gat
//
LOCUS       KCOD01003754             644 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 417451pyr ultra-conserved element
            locus uce-7183, sequence.
ACCESSION   KCOD01003754
VERSION     KCOD01003754.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 644)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 644)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="417451pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>644
                     /note="ultra-conserved element locus uce-7183"
BASE COUNT          187 a           99 c          120 g          238 t
ORIGIN      
        1 cattcactga agtcaaatga tatgttcttt ctgtttgttt ttttaattgg gttgcctatt
       61 agtctttggt agaagtttca ctgtatatta aatgtatcac actgtatact gtattggcat
      121 gtgcgtgtgg tatatacaga atttgcactt gagatcagac tggagaaaat atacacatgt
      181 gtgttgtatg ttctgcaaac ggcacacaat acaaacctga taaaaaactc acattttttt
      241 cctattgcag ttgaatgcac atttgtcaga atgtattaat gccccaagta cctgtagttt
      301 taagcgttat ggctgcactt ttcaggtcag tatataacaa ttatacttcc caattgctga
      361 aagtctttga catgaaagtt ctggacttct gtagttttgg ttaagaaatc atccagttgc
      421 accaagtaca ggagatgttt gattttgcat tttaaaaata aacatggaaa gcccacacat
      481 tcttgcagtg gtttgggagt tcagttatta gatacatctt gttgaaatag gaatatgaca
      541 catttgaaga acttgttaac ttaggataag aggaaagtct cttcagttct tacgtaactt
      601 cagttgtttc tattaagtat gtttatattt tctctcattt gtgt
//
LOCUS       KCOD01003755             574 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 417564pyr ultra-conserved element
            locus uce-2656, sequence.
ACCESSION   KCOD01003755
VERSION     KCOD01003755.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 574)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 574)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..574
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="417564pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>574
                     /note="ultra-conserved element locus uce-2656"
BASE COUNT          185 a          102 c           94 g          193 t
ORIGIN      
        1 tcactcttaa ttagaaatga gtagtgacat accttatata agattttatt cccaacttca
       61 aaaggagcta cctaggtttc cttggtgtct ttactttgaa gaaaatgtct tttattactt
      121 attttagtac aacacattaa aatcaaatat ctcctgtagc aaaacgattc aagtctctgg
      181 aactcaaata attttctaat aaaaaatgca tgagacaaat aaatgcactt tatgttccac
      241 aagaaaaggc agtttcaaca ggctaatgct cagagaaaat tcattttatc aaccagccat
      301 ttcattcttt ggtgctgtta caagctcccc gtggttgcta agcaaccata attcatcgta
      361 ccttttaatg gatactctgc tactgctgag aacattaagg tgaagagaat aaatgccttg
      421 ggtgaatctt gaaatctttc attatgcatg tcattctatt tctgtaatgc tataatgctg
      481 aaatgtttct gtggcaggaa actgagttgt ggtaattgca tattccactc atatatgttt
      541 tgtaagcaga gcagcacgta cttgtctaaa atga
//
LOCUS       KCOD01003756             508 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 417672pyr ultra-conserved element
            locus uce-4170, sequence.
ACCESSION   KCOD01003756
VERSION     KCOD01003756.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 508)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 508)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..508
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="417672pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>508
                     /note="ultra-conserved element locus uce-4170"
BASE COUNT          169 a           88 c           90 g          161 t
ORIGIN      
        1 tgtagcatca tatctctcaa gacagttcat aaaagcacat ggccttcact catcacaaat
       61 atacagttac atcctataca ttgttaatat ccataaacat ttctctttgt ccatttctca
      121 gatgcaatgt gtgtaaaaga aatgcgagca ctgcattata caagatatga ctaatctaga
      181 gaatttccat ttgaaagaga aatgagtaat aattgattgg cctagatcca aagtcacagt
      241 ggggttcaaa aagcttgtaa gtgccctcat aaaaatagaa gctgtatcaa ccaattgaat
      301 ttaattatat gtgaaggtga tgagggagct aaacagcctg taattggagt ccaattactc
      361 agctggtctt ccataaaatt aattcatctg aaagtttgcc attgtcccat gctcgaggcc
      421 tgctgctggt ttaattagtt aatactgagg aatcttgaaa cattacatta ttttgtcttt
      481 attgccaatt atgggttaag gaaaattg
//
LOCUS       KCOD01003757             575 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 417876pyr ultra-conserved element
            locus uce-3338, sequence.
ACCESSION   KCOD01003757
VERSION     KCOD01003757.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 575)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 575)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..575
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="417876pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>575
                     /note="ultra-conserved element locus uce-3338"
BASE COUNT          180 a          110 c          103 g          182 t
ORIGIN      
        1 aagtatttac aagcttttct cccacacaat ttccatatgc ccttatttac acctctctca
       61 aggcgaccac agttaaataa tctgtcacag aaagactgta aacaaaaagt tctggttatt
      121 ataatatttc tgcatttata ttccatcaca tcagtattaa aggctttcag ttacagtgct
      181 tctggggata aaaagctaaa atgcctttgc tcacaggtgc attaaatcct attaaagaat
      241 cttccttata gcacatacct cattactgca tacaaaggct taaaatgaag gtgaagtgta
      301 caaagtaaga tttgatatta ctcggtgtgc atatgctgaa gtcattaggt tttacactgt
      361 acttgaatga tagtaggttt catattccta ttgagttgct ttcagcagtc aatgcttctg
      421 ggtcaagtag tctgacatgg ggtgatgtgt ctcaatacag gggatgagaa aacttcttta
      481 agcagcttta cacaatgaca agtgcacttc cctccatagc tttattatgc aatataagca
      541 tcaggtcata gaacagtcca cagtgtgggg atcaa
//
LOCUS       KCOD01003758             576 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 417984pyr ultra-conserved element
            locus uce-2796, sequence.
ACCESSION   KCOD01003758
VERSION     KCOD01003758.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 576)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 576)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..576
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="417984pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>576
                     /note="ultra-conserved element locus uce-2796"
BASE COUNT          171 a          119 c           93 g          193 t
ORIGIN      
        1 tgctgctctg tccaccctct atctgtttat ctgttaccat cacagtggta acgtgcagta
       61 tcaattggat tttaaaagac atagatctct tatactagct gtcctttttt ataatacctt
      121 ttacaaattt aatcaatgca ttttaatata caatatagtt taagtgcaat atacgataaa
      181 tattcaagct tcatcttaaa catgctctag cctttaaatt gttaaaactg cagtgccctt
      241 tcaatctact tacataatgt cataaaatat acatttcaag gtaaatgaag tcagctactt
      301 caatttagtc cctcaaactg gtagtaaatg agaggttaac actatggtgc caaacccatt
      361 attgagtaaa tttagcacct tggacagctc tgtaaaatct ttattgcttt cctgacctgc
      421 tcgtcatgtt ctgtctatgt gttcagtggc tctcagctct gattgaaagg caatatatta
      481 gatcccgaac acaaacatgc tcgggggctg cttcactgtg agcgtaatga catggaggtg
      541 agaacaattt tctggtcacc gcaatccaag cacctt
//
LOCUS       KCOD01003759             690 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 418092pyr ultra-conserved element
            locus uce-5244, sequence.
ACCESSION   KCOD01003759
VERSION     KCOD01003759.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 690)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 690)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..690
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="418092pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>690
                     /note="ultra-conserved element locus uce-5244"
BASE COUNT          179 a          172 c          163 g          176 t
ORIGIN      
        1 tcagaagccc tcaccttaca gctagagtgg gaagagtgaa tgagattaaa ggatagagaa
       61 ggcgagatcg ccatatgggc agaccatacc tgaatggtgg ttgttattaa acaggctctg
      121 agattttacc ttaccacctt acctctgcca ttccactgct gcccacttca ctttacctct
      181 gctgcctgtc tgcctgactc gcgaaatgct aaacaatttt gatatttacc tgtttatgat
      241 taaattgcaa aatgatctgt ttagttctgt tttaaattaa ggtctgcatt aaatgtcata
      301 gcatttatct ttcataaaat gagacagcaa ggacactaat ttcccaggca ctcaatcact
      361 gcacggtgcc accggagaga gtggctgtgg aggcgcatgc ccgccattca ctgccggctt
      421 gacagcgccc aggcggaatc ataaaagtca attaatcatt aaaagctgtt accagcctgt
      481 attgaactgc tgtggcacaa aatgttaatc agctccacat caataccata aattcctgca
      541 aattggagcg gtcaataacg ccgaggcccg gcaggtcgat gggagggcgc aaggcctctc
      601 tgccaacatg gtggctgggc agccgccctg tcctgtgctg gcccactggg gctgagcagg
      661 tgccgatgca tcactgcccc tgatgggtct
//
LOCUS       KCOD01003760             568 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 418304pyr ultra-conserved element
            locus uce-7897, sequence.
ACCESSION   KCOD01003760
VERSION     KCOD01003760.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 568)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 568)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="418304pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>568
                     /note="ultra-conserved element locus uce-7897"
BASE COUNT          156 a          107 c          121 g          184 t
ORIGIN      
        1 agtaatggat ttcatttttg ctgtagcaag tggaagtagg atcagcagaa ggcagctata
       61 ctgtaatcac tttgagctca ataaggagat ctttacaggc aactttgttc ttatttctta
      121 acgggattaa gaagctcagc tctttaaatt cttgcatata acactgacat ttcgagggtg
      181 tgtttggacc aaggagttca aagaggaaaa gccaatatga ctttgttttt taccttgctg
      241 caggagctgt ttgtgcaaat cgcctataag cttattgacc tgaatctttg actccttgtt
      301 ttctctggat ttggctggag tgtagacact gatagagcac tgatagaggt gattgcacag
      361 ccctcggctt tgcttggcac cagtgacatt atctttccct ggcaaccata ttccttttaa
      421 ttcattacat ttgatttggg taggctttgt gactaaatga aggatacttt ggtaatcaga
      481 gacagagtat aactagaata tgcataagaa cacacactgc tccttccaaa aacgcaactg
      541 tctgcatgat tttcatgttc cccagagt
//
LOCUS       KCOD01003761             392 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 418413pyr ultra-conserved element
            locus uce-950, sequence.
ACCESSION   KCOD01003761
VERSION     KCOD01003761.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 392)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 392)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..392
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="418413pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>392
                     /note="ultra-conserved element locus uce-950"
BASE COUNT          145 a           62 c           79 g          106 t
ORIGIN      
        1 aaaaaaaaaa aaaaaggcag aaacaaaggc aagcagatgg ctaaagatga aggtcacatc
       61 agattgagaa gtttgtcaaa atgtgatgac ataggtaatc tgtaaactgt tattgcacct
      121 agctggaggt gctgaaaaac attttgaaat tacaaaaaac actggagtca ccagcacaca
      181 ggcaggaatg atagcctgga gtggttctgc tcgaatgcca gatgtggaaa gcgacatatc
      241 tggaattaat gatattaaac atgcttttct tttatgctca ataataactc tattatgatt
      301 gatacaaacc gcagacactt tatctagtac aaatggaatc gtctgtcatt gactatatta
      361 aatcatcaat ttctgcatga tgaggatcgt tt
//
LOCUS       KCOD01003762             598 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 418519pyr ultra-conserved element
            locus uce-3186, sequence.
ACCESSION   KCOD01003762
VERSION     KCOD01003762.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 598)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 598)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..598
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="418519pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>598
                     /note="ultra-conserved element locus uce-3186"
BASE COUNT          153 a          122 c          170 g          153 t
ORIGIN      
        1 atcacgtaag ctcagcatcg ggccaggctg ctgcaggagt gggacaaagg gctgatgcta
       61 cagtccggtt tccatggcaa cagaggaggg gtagtgagac cagaaatgtt gcaaacaccc
      121 cttcttctcg ctgcagccca acgcacggta ttgcaaaagc cagtgctgtg gagagggggc
      181 aggaagagcc caaatgtctt tacctttcag gttgcggagt ttccaaaata aaaagaaatg
      241 gcaaaaggga aaggaaagcc gccacgcagg ccttgttttc tgcgtgtaaa atgcgtgtgt
      301 tctttaaaag gcagtggttg gctgcttttc cggacatgat gtggttgaag ctgtcatcgt
      361 aatggaaatt cattgctgta gctatggtaa atcgagtttt ctgcctgtgc tgaatgcatt
      421 agtctaatga gatgtttgca gctggagagc tgagctgctg gagacttaca ctgtgctaaa
      481 agacagggag aagatggctt ttgcttcctt gtgactgtgc tgaaagtcct ctgtttgggt
      541 cccaatgccc aggctctcta aagactctgc taagtgtctt agcctaagca ataggtaa
//
LOCUS       KCOD01003763             350 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 418622pyr ultra-conserved element
            locus uce-6717, sequence.
ACCESSION   KCOD01003763
VERSION     KCOD01003763.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 350)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 350)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..350
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="418622pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>350
                     /note="ultra-conserved element locus uce-6717"
BASE COUNT          112 a           60 c           67 g          111 t
ORIGIN      
        1 tatcccctca ttaaagtgca taaacaatta tatttattga aggtaatgta ctgtgtagtg
       61 cattataacg acactcatta acatatgtaa tcatcatttg aatgggcttt actacaatgt
      121 aaactgataa cggcatgatt acccactggg ttattaactt ttcagtccta agataataaa
      181 aggtgataca agaaacaaaa agcacatgtg cattgccctt cacatgtgat ttatgtgctt
      241 cactgtggag ctatgaacac aggtacccat cattggggag actggctctt tattgcacat
      301 tgtatttgac agaataataa atgtagctga atggttcttg ggtgggcatc
//
LOCUS       KCOD01003764             828 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 418732pyr ultra-conserved element
            locus uce-1970, sequence.
ACCESSION   KCOD01003764
VERSION     KCOD01003764.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 828)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 828)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..828
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="418732pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>828
                     /note="ultra-conserved element locus uce-1970"
BASE COUNT          281 a          134 c          150 g          263 t
ORIGIN      
        1 ttgcattcgt gatgcatttg tgtgactcta tatacagttt tttcttttac atcacaatgt
       61 gcccaaatgc tctgtaggca tcaaagcagg caagaatgac acagagccct ctaggtagca
      121 gggtaaggag aagcagcaag ctattaagat ctttctgtta tttcattatt ttgtaggtat
      181 cgtcttctaa tctccttaaa aagactgaat gtgcatttga acatttctga ggagcaaatt
      241 gctaagcaaa atatatatat aatcctaaca ttttggtaga aatagggtga gttattattg
      301 attcacagag cacgacaaaa catcactgca tgaattagca aacagctgtt tctaatttga
      361 gtttagaact gtacacagag gaacttgttt tagtgttcac tcctttcatt tataatgaat
      421 tttaattacc gctacaggtg agaaaaatgt agaaacaagc ttgtatcttg tggaagaaac
      481 aaaggagaga cagatgctaa cagatttaca gtctgtgata aaaggaatgt tttggtacac
      541 tttacatgta attagagtgc agctgttttc agtcccaagt ccatgatgca cagcagaata
      601 tagtatctgc tgcttttcca aagggagtaa agaaaaacag tgattcaact ctgaaagcat
      661 ttagtttatt cctagatcta acataaaact ttctcctcca gcccaattat gccatttatc
      721 gaagtgtgaa ataacttatt taatgatatg ttaattgtta ccagcaaaat acagactatt
      781 tgacataaga aaaaatagtg ttaaaaatta tcatctgcac agattatg
//
LOCUS       KCOD01003765             756 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 418841pyr ultra-conserved element
            locus uce-2998, sequence.
ACCESSION   KCOD01003765
VERSION     KCOD01003765.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 756)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 756)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..756
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="418841pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>756
                     /note="ultra-conserved element locus uce-2998"
BASE COUNT          208 a          153 c          143 g          252 t
ORIGIN      
        1 tgtcctctgt aactatattt tgtttttccc tattgtttat aactccataa attgtggtaa
       61 gttttagatg gtaattgcta aacttcgtga ttgcttttta ttcttggtaa ggaagagaaa
      121 gggaggattt catatctctc agatctattg gtctattctc caaatgacag gttcctgact
      181 gatcaactat gccacctgct actaaagctc agtaatatta gtctgtgcaa tggcttcact
      241 ctcatctcac acctcagaga tcttgagctc aaccccaggc atcccctgtg tgtttaaatc
      301 agcttaacag ctcatacagt gtgctgattt ccttgtaggc ctctgttttc tcaaaaagtg
      361 atcacctttt gccaatgccc tcaggattaa acagggcagt ctggttttcc ttttctgcat
      421 tggctatacc tttgtagtca ataaaagact aactagaaaa gaatcagctg atgagagaat
      481 caatcttctg gaagcctccc cacagttttc tcatcatttt tgtgccgtct gtcatctcag
      541 attgtaaaat ggaaaccaaa actcagtatg tgggaagact tttagtgctc cttgttaaca
      601 aaaacagtaa gaccaggggt tttgatctta tgagtgtata ggtaaacagt acgctgtaag
      661 tgtgcactct tgaagtagct tttccatgtt tctaatggat gcctgcgaaa aattatcaaa
      721 gaagtatcac aaaggtctca tgacatactg tagtgt
//
LOCUS       KCOD01003766             421 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 418950pyr ultra-conserved element
            locus uce-5214, sequence.
ACCESSION   KCOD01003766
VERSION     KCOD01003766.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 421)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 421)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..421
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="418950pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>421
                     /note="ultra-conserved element locus uce-5214"
BASE COUNT          145 a           57 c           86 g          133 t
ORIGIN      
        1 aagaaacttt atgggcacaa agtcttataa aagtttaaac tcagattttt aaaaaggcaa
       61 taaagaaaac ttcctaaagc tacgctaaac tgcagattta tttacaataa atgtatagag
      121 tcttacatat actataagtt aatggctaat attttaactt tggttggtta atgtttgcag
      181 ggcacttaca gatgctagaa taatctctaa tgtttttgct caatctgctc tggagatgga
      241 tgaaataaat agtttaaact aattaatgta acaccagctg ttacaagtgc ttggcagacg
      301 tctgtgagtt ttgatgggca gagagcggct gttgtacttg actttatttt agtacaatgt
      361 tgatcacagt gtaagctgga ataaatgacg agccaaagga aggaacagag gatgaattct
      421 g
//
LOCUS       KCOD01003767             497 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 419056pyr ultra-conserved element
            locus uce-7421, sequence.
ACCESSION   KCOD01003767
VERSION     KCOD01003767.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 497)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 497)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..497
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="419056pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>497
                     /note="ultra-conserved element locus uce-7421"
BASE COUNT          159 a           90 c          112 g          136 t
ORIGIN      
        1 ctccttccag cagctggagc atacacagga gcaccatcta atctgtagct agccaaaagc
       61 agcaacttta tctaaacttg gacagcacaa gattaatgct taaacttgct tgcaggagtt
      121 gaaaaccggt ttctgttgcc attagttggt tggaagggaa aacagagttg ccgttatttt
      181 tggatatgca aaacagtttt gattttattt cttgcaaact ataggactcc aagccccctg
      241 atacttgatc agaactacat aaacaccaaa aatcaagtaa tcaaagcaga aaggagggta
      301 ctgaaggagt tgggattttg tgttcatgtc aagcatcctc ataaggtgag ttctcaacaa
      361 taatgtaatt gtaattctta ctctaccttg gtggcatcac tgggagctgt ggaacaacag
      421 aatgacctgt tttgccagag tactagaagt atgtggctgg tgtgaaaagc acgaagaagt
      481 agtgaaataa agagttg
//
LOCUS       KCOD01003768             750 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 419169pyr ultra-conserved element
            locus uce-5176, sequence.
ACCESSION   KCOD01003768
VERSION     KCOD01003768.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 750)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 750)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..750
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="419169pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>750
                     /note="ultra-conserved element locus uce-5176"
BASE COUNT          209 a          166 c          147 g          228 t
ORIGIN      
        1 ggttttctcc cctgctggtg agttttgcag agtaagtacc ctccaccaac acagaacatt
       61 ggctcttggg gggtaagtgt ggggctctcc ccacttttta gaggctcaat atgctcctaa
      121 ctttgcacaa agcccggccc gaggaacaaa gcctgtggac caccaccggg aagtggtatt
      181 agtcctctct gcagccttcc cactgtggat gcatgctcaa ttcccggata aatgcacctt
      241 ttaaactata ttaatgtaaa agttttattt gaaagatgcc agctgtggtc ctagcccagg
      301 tttattcatg tgggacattt actgggtcaa cttaatactt gactactgct tattatccca
      361 tcagtcttcg gggacaaccc atgatctaat tgcccagcat ttatgttgcc ctggcaacta
      421 taaatacaga gtaataatcc ttaaagggcc agtgtagaat ttcatgcccc tgcagtgaac
      481 tacacttcat ttcccagagc accctgtgtt ttttaattca gtgaataaaa atgtgtaatg
      541 aataattaat tatgtgcttg gaggcacaat agctgcctac ttttgaatat tcatcagtga
      601 cattattaat tcactagaaa tcccaaggag cagtgggata ggcttttagc ctagctggag
      661 gacttacaga taatactctg caacatgaac aaactttttc aagcagactt ttctttctca
      721 gagttagatt taatttacat cttaataaaa
//
LOCUS       KCOD01003769             623 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 419276pyr ultra-conserved element
            locus uce-3913, sequence.
ACCESSION   KCOD01003769
VERSION     KCOD01003769.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 623)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 623)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="419276pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>623
                     /note="ultra-conserved element locus uce-3913"
BASE COUNT          217 a          111 c          118 g          177 t
ORIGIN      
        1 aatcccttaa attgggaaac tgaaggaagt cccaggagag agcaaaattt tctatcaact
       61 caactgaaaa tgagttagca aactagacaa caaagttcca cttgacctaa actttcagca
      121 acaatgaaag ctgtgtacac acattataga ctatgccctt atgcacaata ttctgtatgg
      181 cagatactgt cacattgtaa aagacctaga tcaacttaaa aaaataaaac ccaatagaat
      241 gattacagcc gctgcacaga atgacaagta ttatcaacaa aaattaatca ggcgcatctt
      301 ttagtgaact caattaataa tgtgcaacaa cagggtctct tttcttaaga tgaaaattaa
      361 ttagtggagg gaaggtcact tggagatgct gacatcactc atcagaatgc tctggcagct
      421 ctaattattt gtcttccagg cttgggtgat cagaaattat tgcaatacct gagcaacatt
      481 ttgaaaaagc tttgtgcatg gctcttttaa ttagacctgg tatttgatta atgcagtgga
      541 agcatttaga tcagcctctt atcattgagt gacttagaag ttttagggta ttatagtgtg
      601 caagacaggg tcactacagt aga
//
LOCUS       KCOD01003770             619 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 419389pyr ultra-conserved element
            locus uce-6593, sequence.
ACCESSION   KCOD01003770
VERSION     KCOD01003770.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 619)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 619)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..619
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="419389pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>619
                     /note="ultra-conserved element locus uce-6593"
BASE COUNT          183 a          116 c          116 g          204 t
ORIGIN      
        1 atctgtgtgc attatcctca gtaaatatta cttttgcatt tggatctcca ctcatttccc
       61 ttatgacccc tgacagtctt ctcctagggt ttgattataa gtcactatgt actggagtct
      121 cgtaaggctt cgattaatcc actgcaccta agcattgctg tgcctataaa aggaaaagtt
      181 atgattccga ataagcatca gaaagaagca aaagcataaa gtattaaact ttcatccagc
      241 accataggag agatgtagtt attaaatttc agctgcttat caaactgata tgaaagtcat
      301 tttgcatgat tgctttgcat cctcgaatct tctgctttta tttgcagtgc atctctgcgc
      361 tttcttatta gaaaaatact caaaggataa aaaagctgat aatattattc agttttgaca
      421 attaggtaga aacattttaa gaagtgcttt ttttattgca gctagtaata atagtggtgg
      481 tcctcctggt agcagtctct tctgatgcta cccagggtga tgctagcttt accctataat
      541 ggccaaagcc ctgatggtta tagtggtaaa gctgctaagg agtgggagct aggatgtcat
      601 tctcaatatc acaaacaat
//
LOCUS       KCOD01003771             490 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 419496pyr ultra-conserved element
            locus uce-213, sequence.
ACCESSION   KCOD01003771
VERSION     KCOD01003771.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 490)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 490)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..490
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="419496pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>490
                     /note="ultra-conserved element locus uce-213"
BASE COUNT          159 a           98 c           87 g          146 t
ORIGIN      
        1 aataactctc ctgtgcgctg tacattgtaa ttgtcagact gcaatttaca gtaatcctcc
       61 aatgcaaaaa cttaaatagc tgcagctgat ttgaaattca tacaaccagt tgaaagagag
      121 aaaaacaaga tgcacgggtt aaaaggccaa attgtgcaag tgtgtgcgct gagtgacaga
      181 cattttagta ctagcctggg accatatttt aaaaggtcac tgaaaacttt tggcttgggc
      241 cctctgacaa acaatgaact ttccatatat ttatttgcca tctctttgtt tttacagcaa
      301 gcagaataaa tgagttaaat gacgttgtgc gggtctgcac attgtcagca caggttataa
      361 gtcattatta aactccatca aatcagacca aacccggtct aggcaatgag actaaaagtt
      421 atttgcattc cttctgtcat aaaaaatcat atccccttac ccaagacttt cgtttcttta
      481 ttaaatgcag
//
LOCUS       KCOD01003772             353 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 419600pyr ultra-conserved element
            locus uce-7076, sequence.
ACCESSION   KCOD01003772
VERSION     KCOD01003772.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 353)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 353)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..353
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="419600pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>353
                     /note="ultra-conserved element locus uce-7076"
BASE COUNT          141 a           55 c           71 g           86 t
ORIGIN      
        1 ttaagtcttt aataaaagct agcagaaaga aaaacagcct attgattttc ttttaggaaa
       61 atgtattttt gtacatccaa gcagaaaggg taagcagaga aaaattgcga aataattaaa
      121 agccaaagat tagaaaataa ccttaagtaa gaggaagagg ttgttgagac agcttagcag
      181 agacaaaagg cactgaagaa cagaatcatc catattctca cactgcaaga taaggtagat
      241 aaaaagccaa ttaatctttg cactgtattt tgaaaaacat actttaggga agactgagtt
      301 gtgggtgcag ccactgaaca cagcaagcca tgcttgcatg aagccacctt taa
//
LOCUS       KCOD01003773             803 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 419710pyr ultra-conserved element
            locus uce-5016, sequence.
ACCESSION   KCOD01003773
VERSION     KCOD01003773.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 803)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 803)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..803
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="419710pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>803
                     /note="ultra-conserved element locus uce-5016"
BASE COUNT          265 a          148 c          141 g          249 t
ORIGIN      
        1 atacatgttt gaacactata agtaatcaaa atacctattt gcaggagaac ataaacattt
       61 gaaaagggac ttgaagaggt gtaattctag aacaagtcta gtgatgtctg aaatgaaaat
      121 ataaactgat ggaaacgcac atcaaagcca gacaatgata ccttttctct gtttaaattt
      181 acatctgata ttgattatta gcaggaaaaa catgaagggc ttctgattat gtagtggggc
      241 tggtggcagc ctttacttgt tactatcctt aaaacctgga gaatgagtat ttgcaatgtg
      301 actgcaatgg taatgggaaa catggctctg ttctctgatg ctgagttgtg attgaaggca
      361 ctgacctgcc atagacttat aataggggag caggtgtggc aatgatggac tttaatttcc
      421 tttaataaac cttttatgtg ccacactttt actgccattc tatgctctcc aaggtcctgc
      481 acataatagg ttcattactt ttgattacta tagtctattg agacaaacaa ctccagaaca
      541 cactatatat tatgttcagt taaaccaata tagactattt atccactgtg cattatttca
      601 cctgcaactc tacagacaaa attaacaaca gctcctgtaa gctaaaacta ttaaaaccac
      661 tggtactcct ttgtcatcat ttcataataa ataccacacc aatcacagtg ctgctatttt
      721 aattatgaaa caaaaagtgt ccactgcttc tactgaacag cagttacttt ggactaaaca
      781 gcaggttgca ttgtgatgaa tat
//
LOCUS       KCOD01003774             779 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 419818pyr ultra-conserved element
            locus uce-7393, sequence.
ACCESSION   KCOD01003774
VERSION     KCOD01003774.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 779)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 779)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..779
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="419818pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>779
                     /note="ultra-conserved element locus uce-7393"
BASE COUNT          238 a          159 c          121 g          261 t
ORIGIN      
        1 aaatcattca tggacaatgt gctttcccag tttccagatt ttataaacct cacacctgtt
       61 tttcttaggt ttttgtgcta cgtcagccta taaatcctcc tgtatttccc agtgtagttt
      121 cttatgaaat aaaacttttt tccctccatt tgctcaactg ttttcaatac ttgcagtcaa
      181 gcctgaagtt gtcaatcaag gaacagctta tcagtctgag cttttccttt tcaagcttat
      241 gctcagtgac ttttgagacc tgtcaacacc cagttgattt tagccttaac aataaagtca
      301 cactctatct cccacctagt agctttagat taaattctga tgtcatatac gtcatattta
      361 catagttaaa actcataaca aagcaaccca caggcaatag gatgtaataa ccatgcaaca
      421 gagccatttc ctgtcccctt ttttctctca cactatgttt cgtgtagttt attggatgtg
      481 aatgttttga aaatgaaaat cgtctgggag aaaactgcta gccaggcgtg aggtttagaa
      541 gaattcaact aaaagaatat atagagttgt aaatgcatgg ccacctctgg tattgtaaaa
      601 tagaaactct ttcaatattc ctttcatttc cacaagaaga atagatggga ggccacaatt
      661 atgtgctcca gcagtcgatt tttaatatct ttaattctgc tcatattaaa ggaaaacaat
      721 taacttggag tcagaaagcc ttaaacacca aaagttttac agttttcatt ttaaagcac
//
LOCUS       KCOD01003775             537 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 419930pyr ultra-conserved element
            locus uce-3564, sequence.
ACCESSION   KCOD01003775
VERSION     KCOD01003775.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 537)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="419930pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>537
                     /note="ultra-conserved element locus uce-3564"
BASE COUNT          157 a           84 c          113 g          183 t
ORIGIN      
        1 ctttccttta ttttattgat gatgtagctg gaaacagctt catggagaaa gggcagtgag
       61 acattttgtt cttggctgag tgatgtggtg cactaggtct tcatcgaagg agcgctgaat
      121 aaaagaagat ttatgttcaa atcacatgct ttaaatattt ctgctaagtg ctagtttgct
      181 ctttggtgtt tagcctgaaa tttaaagcac tgaggattaa aaggattaca acataatctt
      241 aaataatcct aagtgtcatt tacagagaga tggttgtaat aactaaataa aaccatgtta
      301 agggatggca gtgttgtcag tcagcaaatg gaacagaaac agtgcctatg tcactctgtc
      361 attctcctct tgccggctta gtttgatatt gggttcgatg tgggttatca aataacttaa
      421 tgggctgctt ttcagtcagt actgatatgg ctgttgaaac accagtaact aggataattt
      481 gcagaccaat attccatatt ttttagttct agtaaacttt tcaactggat cttattc
//
LOCUS       KCOD01003776             555 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 420040pyr ultra-conserved element
            locus uce-1246, sequence.
ACCESSION   KCOD01003776
VERSION     KCOD01003776.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 555)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 555)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..555
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="420040pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>555
                     /note="ultra-conserved element locus uce-1246"
BASE COUNT          174 a          104 c           90 g          187 t
ORIGIN      
        1 tcctattaca tctagagact tctttttgtt attcaaagac atgaataaaa atgtatatga
       61 ttttaatgcc ttaaaccaga aagctacctt gattcccatt aaaaattgga atatttaatg
      121 tttttgctgc ttctgtggca ctttttttga tattgtgaag aagaacaaaa aagatttctg
      181 agaacatata aaacaaaaaa ctgtgtttga agtattataa taaaacaacc ttcttctttt
      241 aatgcgaagt ccctttttaa tgaagatcct ctggcagctc ttgaatgtat aactagttta
      301 tatcatggga tgaagctgtc tgttctgatg attgacatga gcccacatta caatgtgatt
      361 ctgaaaatta gtccatagag gtccttttca ggtactactc agactgagag ctgccctcca
      421 actacagtag agccttttta accccactca ttggtattct aatctggaag tgctgtcctg
      481 ctttttaaat aacccaggca ttcaggctag tacccccctt gacacattac ttagccaaag
      541 gattcaaatg agatt
//
LOCUS       KCOD01003777             704 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 420150pyr ultra-conserved element
            locus uce-1154, sequence.
ACCESSION   KCOD01003777
VERSION     KCOD01003777.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 704)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 704)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..704
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="420150pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>704
                     /note="ultra-conserved element locus uce-1154"
BASE COUNT          203 a          177 c          135 g          189 t
ORIGIN      
        1 ccttggtcca cctggttaca acttgtaggg aaactgagac atcaacccat cctgtacctt
       61 cttctaatga atccaggaag acaaaaaatg ccaaaaactt ccagaatccc tttttactca
      121 gcactcctta agaaaggaag gacagtttgc tctgcagaag gacagaaagg gctgctcctt
      181 taaggcctct cctcgatgcc ctttcccgtt gagatgacta tcctcaactc cctcctcatc
      241 tccctccctt aagagttcct ctcttggccc tgacagtaag gtatttctgt cccacagatt
      301 ataactcact ctgggctatt attcaactcc caagccctgg ccctgctgca tttagtccaa
      361 acataatatc cttcatgcat atattatctg tctccctatt atctggaatc atttcggaat
      421 taaatttcag tcctgcaata ttggcttgaa gagcggctcg ctttatgggc tagtcaaagg
      481 ttagaatacc aatcaaaata acactgccga tgcagagaga cattttaata ttccaaaacc
      541 cggtaattgt aaaaggacat aatatttttt ccctgattac cccaaaggca acacatgtta
      601 acaaggcgag ggagagagtg aaagaaattt cagagttcgc tgcacgacag atttaaagga
      661 gaagtcatgg atggctgctg tgctccagcc ccgagaagga gggc
//
LOCUS       KCOD01003778             457 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 420252pyr ultra-conserved element
            locus uce-4601, sequence.
ACCESSION   KCOD01003778
VERSION     KCOD01003778.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 457)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 457)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="420252pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>457
                     /note="ultra-conserved element locus uce-4601"
BASE COUNT          111 a          117 c           94 g          135 t
ORIGIN      
        1 ctaatttggt gccatttgct gaatttcact cacatccctc ctttgagctg cttctgatgc
       61 caattaattt tccattccct ttaacctcgc tcaggaggcc gcagcttcgg gatgacagac
      121 cgtgtgtcac agaacaatat gacagattaa acctgtctct gccttgaaac aaataaaaag
      181 ggttgaatat taataaccag aagtttgttt attgaaaatt ttttctttcc aaagccttct
      241 ccgacatcca agttcatcca gggctacttg ggagctgtca taagtgctgt ctcaatagca
      301 gtgggtaact ctttcatgac tcttgggaga tgggctccaa gcatgtcagt tcagtcccag
      361 caaatgctgc cacctgtgcc tgtccctgca tgcccaagcc tggatggctt tgctgctctg
      421 tgaactccga ctctgccaaa ttagagacct cgaggct
//
LOCUS       KCOD01003779             324 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 420349pyr ultra-conserved element
            locus uce-4238, sequence.
ACCESSION   KCOD01003779
VERSION     KCOD01003779.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 324)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 324)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..324
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="420349pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>324
                     /note="ultra-conserved element locus uce-4238"
BASE COUNT          108 a           62 c           62 g           92 t
ORIGIN      
        1 atgataaaag tttttttatg gaaatttctc acagcaagac aatcaatcat atttccaaca
       61 cattcactgt cttgagcctc tgagcctcaa agtctttttt tctatggagc ttacttgtta
      121 atttaacact gatcaaaggc taaaacattt atcaggctta ttagtgaata aacctagcag
      181 caggtatccc aagtgaggaa gcaaatcctc atttcctgca agaatgaact ggaaattatc
      241 caaagcactt gaaaacattt ttcaggagtg atgagctgtc aaaaggcggc aaccggcaga
      301 tgtggcagct ctaggaggaa tgaa
//
LOCUS       KCOD01003780             571 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 420449pyr ultra-conserved element
            locus uce-7126, sequence.
ACCESSION   KCOD01003780
VERSION     KCOD01003780.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 571)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 571)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="420449pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>571
                     /note="ultra-conserved element locus uce-7126"
BASE COUNT          187 a          112 c          109 g          163 t
ORIGIN      
        1 tttaagttac cggcccattc tgaacaagaa atgtaatatt tcataacatt tttcttctca
       61 aaacacatga aattagcaac actagagatt agttttttct gggcaaacta gcaacagcac
      121 ctttcacatg cagggatttc accatcttta actcatgctg agctcttgga aggcatacat
      181 tttactccca tcaccaaagc tccctatata ttagctactt acagagaaaa tgggcagggt
      241 gaaccccact gtgtagagga cagtggatgt gatggtactg tcatggaacg gatacttgat
      301 gttgtcatca ttacagaaaa agcctctctg atacggtttt attttggcca agtttagaac
      361 accaaggggt aagccagctg ttgggggaag gaaaacaaca aaaacaagaa atacatgtgg
      421 ttaaattttc taaacatgca tggaggaagc taccaaattt cgtaagtatc atgcaatgca
      481 ccaaatcctg tttcttttag aagactactt cagaaagact ctgagattct catcagttat
      541 tacaaagttc aaagtctttc cataaggtga g
//
LOCUS       KCOD01003781             456 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 420557pyr ultra-conserved element
            locus uce-4831, sequence.
ACCESSION   KCOD01003781
VERSION     KCOD01003781.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 456)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 456)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..456
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="420557pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>456
                     /note="ultra-conserved element locus uce-4831"
BASE COUNT          158 a           63 c           85 g          150 t
ORIGIN      
        1 aaaaatactc ttaaatatat gaaatgaata ttgtgaaagg tatgcatgga tacttttgcc
       61 ttgctgcata aaactgtctt gtttttctcg catataactg cagtgtaaaa gatgacatta
      121 tgaggaacct tctgacaaat tgattaataa tcttgagttg ctgaagttca gctgagtgag
      181 caattaaaca ttccaaacag caatgaacct tcagagataa tttatgataa ttttatgcac
      241 aagagctcag tggcttttta atttgataga atgttagtag catatatttc taacaaggga
      301 gtttcagtgc tccatacatc actgagatta cttaaacatt tcaaatgtag ttgatgaatg
      361 aagtttcctg agatgtgaga agatacagaa agtgtcagaa ggttgagatt attcatcata
      421 tcaattattg aaagtggatg cattgacatc atactc
//
LOCUS       KCOD01003782             538 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 420660pyr ultra-conserved element
            locus uce-6366, sequence.
ACCESSION   KCOD01003782
VERSION     KCOD01003782.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 538)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 538)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..538
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="420660pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>538
                     /note="ultra-conserved element locus uce-6366"
BASE COUNT          135 a          143 c          139 g          121 t
ORIGIN      
        1 ccctggagcc ctgcactgcc ccgacagcca ggctggggga ggaaacccac cctccagcag
       61 tgccggcaaa gccagtctga cccgagcaaa tgaaaataat caaaagtaat tagaagcgtg
      121 ctggactgct cctcagagat ctgtgcgaga gaataaacat gccggagccc tccgagccac
      181 tgcaaaggcc catgtctgag ctgttaggtg ccctgacctt gtccacataa agacgtgatt
      241 tatgaagtgc agggcacagc agcagggctt ctgtcttctc caggagaacc aaattactga
      301 ggtggagatt aacatgcttt cagttgggct catttccaga ccaagggaaa tttcttattt
      361 acattttttt accttttctt ctcctctccc tcactttggg ctgggacgga tgagccgagg
      421 gcaggagggg cagcagggac agggcaccga cgtccactcc ttcataacgg ctggaaatta
      481 tctgaccccc tgaaatcagc agtgttttca cctgaggttg ctatccgagg aattgaca
//
LOCUS       KCOD01003783             721 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 420768pyr ultra-conserved element
            locus uce-4515, sequence.
ACCESSION   KCOD01003783
VERSION     KCOD01003783.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 721)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 721)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..721
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="420768pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>721
                     /note="ultra-conserved element locus uce-4515"
BASE COUNT          218 a          128 c          132 g          243 t
ORIGIN      
        1 attatgttac cttctagctg gaaagccact tcctttaaag atctggtatc agaagcctgc
       61 ttggagccta gtgcacatct aattatctct cagtcttaat tatttagcaa gtgctaataa
      121 actgcacgta tcatgacact catgtgcaat aagcatataa atttaattta cctctctttg
      181 aagactaaca gacatggaat tcaatcacaa ggcaatggca ttataacctc caatataaca
      241 tcaggtttta ataagcctcc tgtttgctgc acacatgtgc ttaagactgc ctggaaacca
      301 aatcagtaga aaaaagggat tactttagat tactttgaaa tgtgcattgt ttgaaatggc
      361 ctctggtgac cagctttcat gaatggctga ttttacttgt ggggcacgtc atctggctca
      421 attataccag gctcttttgt atgacaagtg cacgtgctga aatatgaaat tctaaaacaa
      481 agtaaatcag atggtgagta ggtaactgta tattattaga agtttgtaac ttagcactgc
      541 acattcttct tactggggaa ttttcttttg aaatttccac agatttgaag ttaatataaa
      601 aatattcgtt ttcattttct tgttcagctg taaaaggcag atcatttctc ctacagttgt
      661 gtatttttaa aatggtactg gagtttgctg tttcacccta acagatgaag tgttgggaac
      721 t
//
LOCUS       KCOD01003784             713 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 420879pyr ultra-conserved element
            locus uce-4324, sequence.
ACCESSION   KCOD01003784
VERSION     KCOD01003784.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 713)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 713)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..713
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="420879pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>713
                     /note="ultra-conserved element locus uce-4324"
BASE COUNT          228 a          104 c          154 g          227 t
ORIGIN      
        1 ttctcaccat tggcaaattt actgtagaag tgattataat gtgaacattt caatgtgttg
       61 cagaggagct atggtttgct tatttaatag ccaagtaaac tcacaagatc tgaaaataca
      121 aattgctact gattttaaat gtgcagttcc atcttaaaga atgttcccat gaatttctga
      181 gcaaataaaa atattcaaaa ctacagtagt agagagtgta tccttgtggt gaatgttaaa
      241 ctgtcagcag gattttcagg tcatttgaca aaaaggatac aggtgctgta gctagcagtg
      301 aaggtgactg ctagtttcat caatcacttt gcctttcttt aagttgatac ataatggacc
      361 ccttcaatca gcttccttgt tctttgtcac ttgtttagga agaagaaaaa agagggtaga
      421 agggctggac tttaaagtca aggttataaa atgaatcgtt acttatttac acaggataag
      481 gaggataagt cagtgtgagg aggggctctt cataaaatgt cgagtttgtc aatgggtgat
      541 aatatgcagt ttgaagcttt gtgcagacct tgagcagtga cagtagttgt caaagcagtg
      601 attctgaacc agaatttaaa attaagacat tgtttagtga ccaaatgtgc taatcagtgt
      661 tctctttatt ttcagagggt cacagtaaat gatgatccaa tgacaaagtt tgt
//
LOCUS       KCOD01003785             481 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 420986pyr ultra-conserved element
            locus uce-4254, sequence.
ACCESSION   KCOD01003785
VERSION     KCOD01003785.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 481)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 481)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..481
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="420986pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>481
                     /note="ultra-conserved element locus uce-4254"
BASE COUNT          185 a           81 c           68 g          147 t
ORIGIN      
        1 gtcactttga tattatactt caaaagtaaa ctaatttagt caactaatct tgtttatttc
       61 ctaaatattg ttagtttcta tcagtcagat gaacacttac ataacaagca ttaaaaagat
      121 acatttagca gctacaattg ttaacataac aaaggctaca gaatccagag gttattgcat
      181 tctcccaaaa gtacttaaat aatagcctaa aatctgaaga attactttaa tacttcaata
      241 aaaataaccc aattcaaaac attttcaagg aaacatagct ccttgctcta ggctaccgaa
      301 taatggctga aagaaagtat atagcttgtc acttctgatt agagaactgt gcctctgtgc
      361 tttgaatgag aggcatgtct ggtaatagga agtgcagata ttaaatttaa taaaataacg
      421 tggaatacga tatatatgaa acttgaccaa gtatagcaca aaatctaaca tacattaccc
      481 t
//
LOCUS       KCOD01003786             658 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 421094pyr ultra-conserved element
            locus uce-7530, sequence.
ACCESSION   KCOD01003786
VERSION     KCOD01003786.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 658)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 658)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..658
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="421094pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>658
                     /note="ultra-conserved element locus uce-7530"
BASE COUNT          206 a          124 c          120 g          208 t
ORIGIN      
        1 tttgtgttat aaccatttta acatattcaa atcaaaggtt ttttggtttt gaagatgtga
       61 ttgccaatta tttttgcact agtgcacata aacaggaagg acagattctt aggtatgagt
      121 tatatattcc tgtacaaaat aattgtatat tctatgaaga gtgattcttt ttctagagaa
      181 atatacaaca acacaaggga aatcttgtac cagcagcata actgaagtgg caagacacaa
      241 tattagaaaa acagagctac tttcattact gtgatgctgt gtgtcagaat gtctctcctt
      301 aatgaacctg tttgcaataa gactccgggt gcaaagaggc tatttagaga gcctattgtg
      361 tctgtagtga gtccttcaaa tatcttccta ccattagaca tgccgcattg accaattctg
      421 tcctgattgc tgttcttttt agtatcaagg gacattcttg cccagacaga ccgatggatc
      481 agaaactgca cttcataaaa tgtttacact gtacacacat tcacacagtg atacaagcaa
      541 cagagtccca gatcacacag catgttgaat gtgccagtgt catctctagg cttatgactt
      601 tccaatatct acaaaaggat ttgggttaaa ctgttgcttg cctgtcattc taacaaaa
//
LOCUS       KCOD01003787             779 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 421208pyr ultra-conserved element
            locus uce-389, sequence.
ACCESSION   KCOD01003787
VERSION     KCOD01003787.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 779)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 779)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..779
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="421208pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>779
                     /note="ultra-conserved element locus uce-389"
BASE COUNT          225 a          146 c          169 g          239 t
ORIGIN      
        1 tcctcacagt ttgggattaa acacaattaa agtgaggagt tgttttacat gaattgcata
       61 ctggacagca tttctgtggc tgctttccaa aggcagaatt ttctagtctc attttaccca
      121 ttttacattc aggataaaga accccccctc aacccagaag gggaaggctc acaagtgatt
      181 gtctcgaagc ctggaaatgg aagacaggat ttcctttctt tcaacctgtg ttttcagtca
      241 attaaaattt gtactcaggg cttttcggtt tgaagccacc cctgtgtctg tgatgagcaa
      301 tccttcttgt ttgtgcagtc attcattatc tccattacca agaggagaat agaggacaat
      361 tacattgttt ggacgaatca gagtgttagg aggaatattt atcatggtgg cagagtgcag
      421 cacctgacag cgcacgattg atggccagga atgagtgtga gtggccaaag cagtctcata
      481 tgatgcaaat tactgactgt ggattccaat ttatcctgtt catttttctt gcctttgctg
      541 aagactatta gtggtttttg aagcagtgaa ggggtcatta ctaatgtggg ctagaagcag
      601 gagggggaag gaggggaaaa gccttctgta attacacagc cttcaagaaa aggctgcagg
      661 cctagccaaa aaagtgtcaa cacttagcaa tcagaaaaat ttattttctt tttatcctta
      721 acccatatta actcaacatt atcatctttc tttgttaata tttgaagaat attaaaagc
//
LOCUS       KCOD01003788             567 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 421318pyr ultra-conserved element
            locus uce-4889, sequence.
ACCESSION   KCOD01003788
VERSION     KCOD01003788.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 567)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 567)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..567
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="421318pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>567
                     /note="ultra-conserved element locus uce-4889"
BASE COUNT          174 a          122 c          111 g          160 t
ORIGIN      
        1 gtaggtctag gaaacagaac aatgacagga ggatcattgc aagacaacca atgtgcgaat
       61 tgtatccaaa atctgaattc accaaagctg aaatagccac aaccaactgt ccatagcctt
      121 gtctagaatg gctttaaaca aaaaatataa agagccatgg acagtctcct tacccctgtc
      181 cagaatttga tgtaaacaac atccatagaa actgggattg ttaagaaagt ttatccatat
      241 atctggatag caataaaaag cgtttcctag gaaactgtaa aaacctgtac caagcagtgt
      301 acagccaagc cgagaggaac atcaggttga tttatatttc caaggtacaa ctttgcatga
      361 tctctttctg atcctgtgat aatgtacaag gagagcacgt gtgaaggtca gggctttgct
      421 tgcttgcttt cttctctgaa atgtctcttg tgtaactcat tggtcttttc aattctcgtt
      481 tgcaataaca gagcattacc gctccctgcg tctgtccttc ctggtcatgc caaggctgca
      541 ttagtaattt ccttctgctg ccaaaga
//
LOCUS       KCOD01003789             719 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 421429pyr ultra-conserved element
            locus uce-2485, sequence.
ACCESSION   KCOD01003789
VERSION     KCOD01003789.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 719)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 719)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..719
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="421429pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>719
                     /note="ultra-conserved element locus uce-2485"
BASE COUNT          256 a          126 c          139 g          198 t
ORIGIN      
        1 tatcttaagc tcaaaaacaa agagagatga gtgaactttt gactaactca gggtttttaa
       61 agactgactc aattttgcat atattgtggt gtcaagcaaa agactggtgg tgtcctaaac
      121 gaaagccaaa gtcatcacaa aatagctttt caaaataaag gctaggagaa gagagaggaa
      181 gtgatatcgg acttgcatat gcaagacact ctgtatattt caagttttag caagtctagc
      241 acaagatgtc caaatgtttt ctctggctat atcttcagag gctaaactgt gattaatagc
      301 attgaaagaa ccctttgaag caggattggt gacatcaaag ccctaatcca tgggtggcag
      361 gatttttata atgagtggga agcattttaa cacatttcaa aggatttaca gcatgaataa
      421 acaataggcc tctgcagatg taccacacac ctttcagaac cagaacacat aaataagtgt
      481 ctattttaat ttaaatgtaa ataaagtgtt aacacttctt tcagatgcta aatgacttgt
      541 ttgcatcaac tccatgttta gctgtttgct ctacagaaag gcagtaactc taaacagtct
      601 tcagagtttt gctgtattac ataactagta aggcacaagt gcaaaaacga aaaccaagag
      661 catgaaatcg ctagtaaagc agtcactggt aataattccc taagagagca gagcaaacc
//
LOCUS       KCOD01003790             575 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 421534pyr ultra-conserved element
            locus uce-4699, sequence.
ACCESSION   KCOD01003790
VERSION     KCOD01003790.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 575)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 575)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..575
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="421534pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>575
                     /note="ultra-conserved element locus uce-4699"
BASE COUNT          168 a          133 c          104 g          170 t
ORIGIN      
        1 atcaatcatc actgattaag taattatggt accctacatg ttatcactta tcctttatct
       61 gcgtacatta cagaccattt ttttgcattc aaaaataaaa atgcacccca cagcactgca
      121 atccagctcc aggttgtaaa acagaattct acattactat caacctttaa gcgctacaat
      181 ttttttttaa caaaagcaat tggtttccaa caggctggat aataagtctt ttgacctgca
      241 ttcttctttg acccattaag gtcacccctg tgctcgggca tatagctgac ttaggaaatg
      301 cctgcaagtc ctgcatttca tctcctgccc actcaaaata aagctttctt taaatgtgtc
      361 tgtatgggtc cccgaagacc agggaggcat ccctgtagtg ggcaatggag ggacagaagc
      421 ttctgccttt attaatgaat gcagaccatt atgagtctgg ctggctcctg cactgttccc
      481 agaagcatat actgtacgtg acttaaaatg ctagaatatt gacacaaagc gagctgggca
      541 cccctaagga aaattactcc ttggatataa tgtag
//
LOCUS       KCOD01003791             376 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 421642pyr ultra-conserved element
            locus uce-2437, sequence.
ACCESSION   KCOD01003791
VERSION     KCOD01003791.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 376)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 376)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..376
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="421642pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>376
                     /note="ultra-conserved element locus uce-2437"
BASE COUNT           86 a          114 c          100 g           76 t
ORIGIN      
        1 tctgcctcag gcaagagaga cccctccaga gagatctggg ctaacccaga ggtaaagttt
       61 tacgaaaggt ggctgtacat cgctcttgaa gccaatcgcc gatcctgcac accaggtgac
      121 cttccttgtc atcttccacg ctcctgctgc gcttactgct ctgttggctt ctctgcacac
      181 accgcccccc ggtcattcaa aggtggagga cgacggggtg gattttccag atcccagcat
      241 ttcataaggc acacagcaac gatagggata ttgcaaggga cacgtcaaga cacagggcag
      301 ggaagccgcc gttccccact gctgccagag gcacgacaag gaggccttgc gctcgctttg
      361 gacaggctgc ccagta
//
LOCUS       KCOD01003792             608 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 421747pyr ultra-conserved element
            locus uce-463, sequence.
ACCESSION   KCOD01003792
VERSION     KCOD01003792.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 608)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 608)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..608
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="421747pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>608
                     /note="ultra-conserved element locus uce-463"
BASE COUNT          159 a          142 c          134 g          173 t
ORIGIN      
        1 ggtggctttc caggctgcag gctgctttat aaggatgaat gaagatgaaa aggaagacaa
       61 atagaagtga atgaggcact gctggccgtg attcatgaga gcctgcaaag cctgttagcc
      121 tccgcctggc tcccttcgcc gggaataatg gatagttaca gtgcggatag tgacattgtc
      181 aaaccatcag gaattgctga ttatggtgct aaatattgat ctctgcttca catgtgtcaa
      241 aattctttct tcccttaatt agaacttccc taagcaccct ccaagaacaa accgaataga
      301 tcagatctcc gtgaaaggga gtgtgatacc agaatataat tgtgacctct tgtcttcctc
      361 ctctctctgg agttttgaga tgacttcagc tgtctatcct gcccttccca gcacatgcga
      421 taatcatact catttttccc aatctaacca taggaagatt tttccaaggc tgtgcttttc
      481 atcatttcaa cccaccgggg ctgcagtcag atggcagcga aacttaaagt gccagaaggt
      541 gcctttttct atttgtttgt ttcatggtac actgcaccag gcaatgacct gtggcaggag
      601 tgtcacac
//
LOCUS       KCOD01003793             770 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 421859pyr ultra-conserved element
            locus uce-4659, sequence.
ACCESSION   KCOD01003793
VERSION     KCOD01003793.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 770)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 770)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..770
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="421859pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>770
                     /note="ultra-conserved element locus uce-4659"
BASE COUNT          279 a          143 c          127 g          221 t
ORIGIN      
        1 aaaactcaga taaagaaaca tatccactta cacatagtgc ctgtggttaa atgaagaaaa
       61 ctgacacttt tcccctttaa atgttctaag tgttcactta agaactggac tctgcagaat
      121 ggaatcttaa cttccatgac tgcaagatgg agacagttgg ttggaaatag ctcttttgaa
      181 acacagaaac taaaggttac ctgctacagt tttactaaaa attgtacaaa attgccactt
      241 tttttcaatt agaaacaatt cttatgacca gaattcctat aagacaatag aaaatacatc
      301 aaaagaatga tagataaatc catccttgga agcaattgtt atgtgttaac ttacagatgc
      361 tgtgctagga catggaccgc caacactgga ttaaccttgc ctattagcta tgtttctggg
      421 aggaagagca agtacacggt tcacaaatat accaaataac aaccaaatat accaaatttc
      481 aacctgatgg atgccagaat accacttttt gaacaaatat tgagcagaat aaacaggttt
      541 atcccctttg gctccacgac tgaaatgaaa ttaaaaactg gaacaatgaa acagcatttt
      601 ctctggtttg tgttttttgt tcttttcttt taaacaaagc atttaagaca actttaaaaa
      661 gcaatcttac ctgattagtg ttcttctgcc ataggcacag ggaccagaga accgacaaag
      721 gattacagaa ataaagctaa ttcactagtg attaatgtat ccagtgaaac
//
LOCUS       KCOD01003794             532 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 421965pyr ultra-conserved element
            locus uce-6907, sequence.
ACCESSION   KCOD01003794
VERSION     KCOD01003794.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 532)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 532)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="421965pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>532
                     /note="ultra-conserved element locus uce-6907"
BASE COUNT          162 a           97 c          104 g          169 t
ORIGIN      
        1 acacctcgta gcagattttg cagcacgaca gcagtcccga gcagagtttc cttgcaagag
       61 atgtgttgct atttttgata ttcagcccaa atgaaatctc tgaaggagta tctgtctttt
      121 gctaacagcc atcattttta tataaagtcg gaggtattca tattatgtct tcatcttcta
      181 tatctcaact agtaacaata tcacaactac tccctcctga caactatatt catttctcat
      241 taaagatatt tcatgtttta ttcaggaatt taaatgaagc tatcagagcc tgtaatagca
      301 acagtttggg ataattgtat ctcattgatg gcagcctcaa gagttctaat taatatatat
      361 ttagctcctt ggttgtcttt agaccaaacg cctcaatatg aaagacaggg agaggcgata
      421 aggggagggg gaagggaaca gactccaaaa tttttgaaat tcggatagga aaatctgtgt
      481 tgtgagaagg aactgcgtgc tttgggattc tttcgcaatc caaaataact tt
//
LOCUS       KCOD01003795             613 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 422072pyr ultra-conserved element
            locus uce-2864, sequence.
ACCESSION   KCOD01003795
VERSION     KCOD01003795.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 613)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 613)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..613
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="422072pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>613
                     /note="ultra-conserved element locus uce-2864"
BASE COUNT          209 a           99 c          136 g          169 t
ORIGIN      
        1 gaaatatgaa aacacaaatc aaaccattta gctgaaagtg aatgaaaaat aaattagagc
       61 aagcaggata tgttcaggac ctgtctttcc tgtgacctac aggattttaa gagaaaagct
      121 tcagaatttt attggcattg ccactattag gcgaactttt ctttcccttc tccccagact
      181 ggggtcagct ttaaagagag cattaagtga atggctaatg gaattaaggg tataataata
      241 gaaggatata gtgagacaat tgtattaaca aggaataaat catgttgagt gtaaggtaag
      301 tgttttttaa ttgattgatg ggaaggatgc tccataggga ggactaacag ccacttgcct
      361 tcccatctac agtaaaaagc caaaagggaa aaagagataa gaaaattatg cagtggggaa
      421 ataaattatt cagagaagat ggccattttg tgctgacatc actaatgtga aaaagcatta
      481 aatctttgat actagctgca ttcctcagag gttgtcgtgg ctgcacaagg tattggagat
      541 tacagcttca gcttcccttg atgccttaag tggcttccca aggtgatcca ctaagtgaag
      601 actcagcaat gtc
//
LOCUS       KCOD01003796             635 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 422185pyr ultra-conserved element
            locus uce-4261, sequence.
ACCESSION   KCOD01003796
VERSION     KCOD01003796.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 635)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 635)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..635
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="422185pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>635
                     /note="ultra-conserved element locus uce-4261"
BASE COUNT          224 a          133 c          106 g          172 t
ORIGIN      
        1 tttcaaagtt attgcaagtt agtattcaga ccataccaaa accattttag tcttcaatta
       61 tccaccatgt attttcaatt agtactaaaa tctaattgac attagaagaa aggcaagccc
      121 ctgtagtgac aggagatcac cgtattacag agtgtgctct aggctctcac agaataggaa
      181 caccacctac agccaatgaa acatatagag ttagcattcc aaatggaata aaagactttg
      241 gtatggcctc agcacaaaaa agtagcctac agaatttaag aaaagtccca cagaccccag
      301 tccaaggctc tgctgcccac gaaccacttc taagcagaga agccacatca cacagtctga
      361 ctgccatgtt agtttggagt tgccgtctgc aatatggaca caaaaagtac cgtatgttag
      421 attagcaaga taatgcaaca aatcagtttg tacaaattta cagtaattgc atttatattc
      481 ccagcacgtc catgcagtgt ggcttaattg aatttgaggc aattccaatc taatctttac
      541 aaattcagat gtaaaatttt tcttacatga aaagatgctt atttttaaga agatttaaaa
      601 gaccctggaa actacctcca gaatcatgcc taaaa
//
LOCUS       KCOD01003797             764 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 422295pyr ultra-conserved element
            locus uce-1823, sequence.
ACCESSION   KCOD01003797
VERSION     KCOD01003797.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 764)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 764)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..764
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="422295pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>764
                     /note="ultra-conserved element locus uce-1823"
BASE COUNT          234 a          148 c          154 g          228 t
ORIGIN      
        1 aaatggaacc tgctttcagc actgataaaa tctgtgatga tttttcttta tagcctaagg
       61 agagaagttg tataagtcta ttgtgtgaag caaatatttt gctgttcaaa ataaataagg
      121 actgaaaaaa catgccaatg aaaattaatt cttggcaatt attactctac tcagttgctg
      181 aggtgaaaaa tagttaaaag acaagaacca gaactgctct atactttttt tgaataaggt
      241 tccttgcaat tatggtctct cccagctttt tgcaaggtac agtagctgca gctttgttta
      301 tctggcccct acacaatatt gtcaggatgc atttccattt tccaagtgac tgctgccact
      361 gtgccacaat ctgtgctcat ttctcgagca gctaaaccct ttgacactgt ggtttttaat
      421 taaaattaca ttaaacttaa tcagccagaa agaggctgct gtagaaggca ggtttgattg
      481 caacctgcaa agggcgctgg ggctgccaac tcgctaaaga tgtgccggca gatgccaagc
      541 tgctcgtgtg agccccatgg tcacaaaaat gctatgagag gtcagttctg tcttcacttt
      601 tttctagcac tgtcaccaaa ctataatgcg tgacaactct tgataaagct caaggaagag
      661 aaaggaatac attgctaata tggacaatgc actctattct tttctcaaga attgagggtc
      721 acagaaaata tatttgaaaa actgcgaatg atagccctgt aggt
//
LOCUS       KCOD01003798             469 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 422403pyr ultra-conserved element
            locus uce-4356, sequence.
ACCESSION   KCOD01003798
VERSION     KCOD01003798.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 469)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 469)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..469
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="422403pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>469
                     /note="ultra-conserved element locus uce-4356"
BASE COUNT          159 a           88 c          103 g          119 t
ORIGIN      
        1 aggacatagc aatttttcaa actaaagctt accttgaaga aagtcatggt tgctccatct
       61 tcaactgctc catactctat ctttgtctgc ttggccaaat catcagcaga atcaataggg
      121 gattccatac gttccactgt cagaaaggcg gctaggttag cagtgtacga ggaaatgatg
      181 ataagtgtga aaaaccacca aatgcctccc actatcctgg tggagagggc tttaggcatg
      241 agctcagaac ctaatgaaaa ccaggggaga aaggtgaaac tgatgcacag aaaacaatta
      301 ataagtgttc agcacttttt gccacagtgg ggagatggaa tcactgtgct taagctacag
      361 gtttacatgt actgcttgta caaacacaca caactgaaat gaaaaataac tggttaaatt
      421 tataaagaca gatcttttct gtgggaatca aaagatagta atgggagat
//
LOCUS       KCOD01003799             564 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 422508pyr ultra-conserved element
            locus uce-7298, sequence.
ACCESSION   KCOD01003799
VERSION     KCOD01003799.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 564)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 564)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..564
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="422508pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>564
                     /note="ultra-conserved element locus uce-7298"
BASE COUNT          157 a          102 c          135 g          170 t
ORIGIN      
        1 ataagttact taggaaagga attgagggga gtttggtcct ggggtagggc tggttggtgc
       61 atgtaggcaa aagcaatgct gcatctttaa acaagcttag gtttctttaa ctactgagcc
      121 taactctgag atctcccctg ctgtgagcca taacttgctt gtaggcttgt tctagagagt
      181 aataagtatt gttgtttagc aattgtgttg ttgaaattca gctccactat gtctgacagt
      241 atttatctaa aatactttcc ctggtgcgtg ctcaagttcc agtaaaccgt gtcttattgt
      301 gcgacctttt cattttccag tgaaaaggga tcagctcgtc agataaaagc tacaagctga
      361 agtacaggaa aaatgcgtgc tcagaaaatc cgagcatgat tgaaaacaag atgtgttaaa
      421 tcaatgcagt ttatcgcctg cctattcctg gcaattgctg ttctaagctc attctgagca
      481 cacactagat gataaaagta tagtgtcaca gtgctcactg gggtgtgagg gcaggaaaca
      541 tgtttatcag acaggctggt atga
//
LOCUS       KCOD01003800             766 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 422621pyr ultra-conserved element
            locus uce-494, sequence.
ACCESSION   KCOD01003800
VERSION     KCOD01003800.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 766)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 766)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..766
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="422621pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>766
                     /note="ultra-conserved element locus uce-494"
BASE COUNT          239 a          150 c          138 g          239 t
ORIGIN      
        1 aaatctctgc ttaacacggg gatttatttt aatgacctac atcagtaatc gacacatcac
       61 taataaaaga catacaaaca gatataagca gaagctagtt tttaaagagt atagctcatg
      121 gcaaaaagac acaaaactga actttccaag atcagtactt aacataaaaa tttcatcaca
      181 atctttatca tcttgcagtg gttgcagaaa aggcctaagc tctctccacc tttaacttcc
      241 taaagtcgcc tattttacct tcaaatctga tgaagtgtca aagtcattta ccagtaatga
      301 gttctgctgc aaattttatt ttgcttggaa tttaattaat gggccaaaga ctttccattg
      361 tgatttgagc aaatgaataa taaatcaaga aaggagattt gtcagggaag gaacatctgt
      421 ttcttacaag cgttacaaca tgactacagc tcggctgtgc attaccagca caaagacggt
      481 aggagtcctc tcctctgaag ctctcttcat ttattgctcc actgaaggtg aacagagagc
      541 actctaatgg gcctctggtg ttaataaaag cttttcgctt ccccagtttc gctgtagccc
      601 cttccttttg ggtgctactg tccttagtac atggtttgtt ggtcaacgtc aggattctgc
      661 agtgtcagtg ctttattgga tgattaataa gggaaagaca aattcataag cagaaacaat
      721 atgaaattgc catcatatta gtgttaactg tcatgctttt tatttt
//
LOCUS       KCOD01003801             664 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 422732pyr ultra-conserved element
            locus uce-7058, sequence.
ACCESSION   KCOD01003801
VERSION     KCOD01003801.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 664)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="422732pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>664
                     /note="ultra-conserved element locus uce-7058"
BASE COUNT          217 a          125 c          135 g          187 t
ORIGIN      
        1 tgggctggtt ttgttagctg gagaattttt accaccgttg tccgtggaca gcagtatccc
       61 aacatacttc ctgatgttag cagttgcaga ctgttaccac ctagcaaatg cttaaacaaa
      121 accacagttt gttccagaat gataaagtga ccctacaaag tgaattacac tgtgaaatgt
      181 aaaacacagt gtagatgcac aaatgattat ttcattatct gcccattgta agaacgacag
      241 atacaaattg ttccaatcat agagtgatga aagagtaatg aacaatgggt tcttgaatga
      301 gcacaggaac aaaataatga attgcagttt aaatgaaatc aggagtcaat ggactggatc
      361 acagactgtc cttcagacat aggaattctg cattacttaa acactgttag ttggaaaaat
      421 gtcctttaag aggaaggaat ctaaatgggt cagaaagaga caagtatgat gagcctggac
      481 actggtttta gcaaaggact ggagcatccc cattcctgat gttgatctat tacaaattag
      541 cagcttccac tccgcaaagt tattgttact tttccgtgtt ttaacctcgc tcttcctcta
      601 ctactagtta ctttgatgca acatctgacg agatacagat tttgggcaca gaatgaagac
      661 caag
//
LOCUS       KCOD01003802             742 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 422938pyr ultra-conserved element
            locus uce-1972, sequence.
ACCESSION   KCOD01003802
VERSION     KCOD01003802.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 742)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 742)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..742
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="422938pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>742
                     /note="ultra-conserved element locus uce-1972"
BASE COUNT          219 a          159 c          164 g          200 t
ORIGIN      
        1 ttttgccaga gcttcgggct ggaggggggc accagggctc acctacccag ggaaatgtga
       61 tggagccagg gccccccagt gtcctctgac tgtccccagc ctctctgcag ttgttggcag
      121 tgctgctgcc caggatgcct gagccccttt gcagcctctc acctcgcaga ttgtgcagga
      181 ggcagcctgc cttttaatcc aagtcagaaa tggaccagga tacatcctca atgcaactaa
      241 ctgtttctaa aaaaaagacc atctggtaat tgtcttcctt tagatcttcc cttaattatg
      301 cttttaatta aagatggttc aaggcattgg accacatgaa gggcagtaat tacaaattac
      361 attacaaacc caacagatgt agctctatct gctgggaaaa ggtactggaa taaaatttga
      421 ctaaacttta ggataaatta atccgctgcc ttgagaacag aagcacattt tttattatgc
      481 agactctagc caggatttaa gttctctgtc atgattgttt tcatatttct ttgacatcta
      541 ttgatttgga ggcagctgca aggctttgtc acaagagaga agagcagtca caatatatta
      601 gcttgatggc ataactcgaa tatgagtagg aaggatagaa acatgacagg gagccacgtg
      661 actgagtgat gggtctccaa caaaataaag aaattaattt ttaataagct ttaaaaatac
      721 cacagcctgt gcaacagcaa gg
//
LOCUS       KCOD01003803             836 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 423049pyr ultra-conserved element
            locus uce-810, sequence.
ACCESSION   KCOD01003803
VERSION     KCOD01003803.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 836)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 836)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..836
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="423049pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>836
                     /note="ultra-conserved element locus uce-810"
BASE COUNT          265 a          145 c          154 g          272 t
ORIGIN      
        1 gattagtgtt aaaaatacaa ttcttcaact gctatgagtg ataattaaag ctatttgtgc
       61 atgtatagct tataatgatt aacttgtctg cagtcagata aacaaataac ccgcacctgt
      121 aaagacttta tttcctgaag gtaaaacaac tgtttaggaa agatcatgct ggcaaaacag
      181 ctgcttgcat tctggagagg gaacaagttt caaccaacgc caactctggt gttttatcag
      241 ctctatctca ttaactggaa acaaggctta aatgctttgt ttataaatta tgattattcc
      301 tgattgcagc agttactgat agtgccactc atttgcaatg caactctttg aattttttta
      361 attacaattt gaaacaaggc agagaagatt aattaaccca cctggctggc tggcacatag
      421 tcctggcttg gttctgtcat actcatatac atgttctcac cgtcaaactg caaaggaaat
      481 aatagtaaac attcagcaaa cttgattttt tagcattgac tgcagtagct ataaaataat
      541 attacagcct ggttttagag acttgtaatt gcatgtgtgc atcttgtctt tgatgttcct
      601 gttgtcatcc ttattgaccc tggatgtcag tgatttggag taattagcac tctagtaatt
      661 acagctagca aggaagaaat gaatggtttc ctttcatctg caatctgttt taaaacaaaa
      721 tggctcattt tgtgcaccat gtatacatat tgctgttggt tgaaatgaag tactaagtga
      781 attgcacact tactgagaaa aggaagatga gaatagaatc tgcactaaaa tgcatc
//
LOCUS       KCOD01003804             461 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 423157pyr ultra-conserved element
            locus uce-609, sequence.
ACCESSION   KCOD01003804
VERSION     KCOD01003804.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 461)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 461)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..461
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="423157pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>461
                     /note="ultra-conserved element locus uce-609"
BASE COUNT          173 a           95 c           62 g          131 t
ORIGIN      
        1 aaaaaaagaa gaaatcattt gattttcatt gccctggaga gaattaaata cccccaagga
       61 aaaattctgg tacattctct gcacacattt acatgcagcc agtgaagtaa acatttccat
      121 aattgctcac ttcagaacac gttacccagt tcctaggtac aataactgtc aggagtcaat
      181 gaggaataaa gaattttcct gaatccttgc acataacctg actagcatta ataactccac
      241 agttgtacat aagttaagaa atggattact gccaggcaac aaccttgctc tgaacacttt
      301 gggcataatg cattcttcaa actatcatta acaaaataaa tacatataaa aactcaaggc
      361 tactgaaaaa aaagtctctc tcagttaaaa accatgcaca aactattttt tcttaacctt
      421 ggaaaatata gtaacatatg gcttccattt aattccaatt t
//
LOCUS       KCOD01003805             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 423265pyr ultra-conserved element
            locus uce-6643, sequence.
ACCESSION   KCOD01003805
VERSION     KCOD01003805.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="423265pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-6643"
BASE COUNT          229 a          132 c          108 g          171 t
ORIGIN      
        1 atctagtcca actccacctc caagcatggt cacctaagag aaaaccagat atgcatttca
       61 actaatcaaa accaaagagg ttcaatcagg caatgtgtaa ctaccaaact gacatcttcc
      121 catggtccat ctgaagtgta agagaaagct ctgcagtgac cctctagctg actgaatgta
      181 aaagagagga gtatgaaacg tgttttgtga agcagaactt tatgtcaggt taaagctaga
      241 cacatctctt ccacacagtc taagctcatc aattgtgcac ctaaaatttt atgggaaagg
      301 atactgtttg atgcagtcca ccagtggtcc ataacaacag tcattcacag tacactgcag
      361 acaaataaga gaagtagtat actgatgggc aactacaaaa ccattataaa gagtatctta
      421 aaaacagtaa ttacttttcc tcaaaaaggc tatcagatgc tgttcagatt taatcacaga
      481 aaacaaaaac tgcatgcttt tattcactat aaaagcaagc tattaaaaag tgaaatgctc
      541 ccctcacaaa tattgcactg ccatttatag tgcactctga cctcactgat agtttatgat
      601 gacagtaatt aaatgaggtt taaaatcttg tactctgcta
//
LOCUS       KCOD01003806             681 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 423375pyr ultra-conserved element
            locus uce-699, sequence.
ACCESSION   KCOD01003806
VERSION     KCOD01003806.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 681)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 681)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..681
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="423375pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>681
                     /note="ultra-conserved element locus uce-699"
BASE COUNT          221 a          151 c          118 g          191 t
ORIGIN      
        1 agaggagagt tgggacacag ccgccacata tatcatcctt tcccatcagt ctctgctcct
       61 ccctgcccct cttcctccta ccagcaaggc attataaaaa tgtcttatct gctttcgact
      121 tttttctgaa atcacagtac tgctgaaaaa gaagaggaga gacaaaaagg caataggatg
      181 aacaagaaaa tggcatgtaa aataactata agatattcca ggggaaaatg cacgagctgt
      241 aatcattcaa gatttcagca acttgactct tcacatgctg aagccacatt ttcaaggtct
      301 tatctgccat atggttccct gtttggatga tttattaggt gtagaaagca cactgataaa
      361 ttttactgca tttccctgaa taggcaacct atggtgtcaa taacaaagct caggccgctt
      421 taatgaaaac tgtaagcacc aaagggtaac catttattta tgagtcacta cagtattact
      481 agggcaaaat ttatcttccc ttctcacgca ctctgcagaa accaaatctg gtcaaagaaa
      541 cagcgatcac atccatatgt cagtgactta ctaacatgtc tcctgcacac tcagggcttg
      601 tagccaaata aacagtttac atttaatgac taaatgcaaa agatgctctt atgttttaaa
      661 acttgtgaca acttgcatat c
//
LOCUS       KCOD01003807             549 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 423482pyr ultra-conserved element
            locus uce-6796, sequence.
ACCESSION   KCOD01003807
VERSION     KCOD01003807.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 549)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 549)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..549
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="423482pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>549
                     /note="ultra-conserved element locus uce-6796"
BASE COUNT          176 a          100 c          100 g          173 t
ORIGIN      
        1 tgcatgtgtg tggttcctgt ttatggtata ggaggccgtt gaattatcaa accagtaatt
       61 ttgccattag tttttcagtt tgcttcttgc atgcatattc tgtggtcaaa tccattagta
      121 agttagagtg ataaacacct ggagtctatc aaaaacaaag agagtcttat tctatacgta
      181 caaccagcca ggcaaacata acgagcaaag actgcataat atagaattca aacaggaata
      241 tgttttttat gatgtgccag cataagggag atcaaagact aaagccaaat aaatagcaac
      301 tgggtaccag caaaggaaac atatttagaa cttaaagtaa tcagaaacaa acccagtgta
      361 tgccaacacc ctctgaattc aaaagtaaca ttttcctcct tttcataaaa ggttcaaggg
      421 ctggtagatt ttattttctt tttcaatcta ctgtttttat gactggaagg gaactttcat
      481 ttctcacaga cagtgaagaa tcatctcctc accacattgt ctacttcctt ctggtgtttt
      541 ttgggagtt
//
LOCUS       KCOD01003808             841 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 423594pyr ultra-conserved element
            locus uce-1090, sequence.
ACCESSION   KCOD01003808
VERSION     KCOD01003808.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 841)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 841)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..841
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="423594pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>841
                     /note="ultra-conserved element locus uce-1090"
BASE COUNT          248 a          158 c          155 g          280 t
ORIGIN      
        1 gtaaaacatc tgttaggaga atattttata gtgtttgctg tatgcagcaa cgtgtctgta
       61 atctcagacc atgtttgctg tgccatagtc actctgcagc tctcctcact gcacagttct
      121 gatgcccaaa gtcaccttga gtggagcaag tattaatttc tgtcagtggt gttttaaatg
      181 tttgcataga cagagttatc cagtgtgagc agactgtagg tacagacaga gcggctcctc
      241 gcttgcctgt cctttaggag ctctgctcca gctacgtacc cagcagccac cgagtctttc
      301 cttacaccta gtctggagtg taaagtcata gtagtattca aaaggttaaa gcagagtgaa
      361 ctgttaattt taatgctttc tctaagcttc agttttaata agcgaaaatg atgttcttat
      421 ttgcagtaaa gtggtgttat aaaattctgt ctgtcaagct cattttaaaa ccatggaaat
      481 aaatgatctg acaaaatcag gctattagac aagtgaagaa gagtgatttc cataaaagta
      541 gaggagctgt tccttaattt cacacttggt agtcttttgg gtcgactaaa tttttaaata
      601 agtgataaaa ttatattagc gcaattgcat ttttatagat ttttttggtc attgtactct
      661 ttttcaattc ttttatttta attcaaacca ttctgctgaa aggttacctc tcaacttatg
      721 ttacctcata acagtttctg ctcacacaac agaactgtag gttcacaaat cctccatata
      781 aaagtatcca gaacgaccac actgacccaa aagtattcta aagtggaaag atcattttat
      841 t
//
LOCUS       KCOD01003809             771 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 423811pyr ultra-conserved element
            locus uce-3651, sequence.
ACCESSION   KCOD01003809
VERSION     KCOD01003809.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 771)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 771)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..771
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="423811pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>771
                     /note="ultra-conserved element locus uce-3651"
BASE COUNT          201 a          190 c          179 g          201 t
ORIGIN      
        1 gacatatcca caaacagcag cggagacttc ccggcgcagg cagtgataga tgaggacttt
       61 tgctcactct cagatgcatg caagagaata gttttttgtg ttaagagatc attacagctt
      121 cagccctcct actgcactgt ttcctctgaa atcaggggca agattaaatc tgttgtagca
      181 gagcgctccg taatggctct gacagacgtt gtttttcctc ggcctcacat ctgggagtta
      241 accagcagag cacttgaaac caaccaggtc agctctttag ttgagtttcg tgtctaatca
      301 gccaggaagg ctgaggcctc aggtcacaca tggaaatcac tacagctatt taagtcgcca
      361 gaggttatta ataaatctcc cactatttcc ttaagtaaat aattggaggc ccatctttca
      421 aacaagttat gtctggccat gttatggtac caattttatc cttccttttt tcccttcacc
      481 aagcaggaag aacaaatctc tggtgacaac aatggcaaaa ctgtgaatta taaacatcca
      541 tgtgtctctc atttgaatgc ctcctcaagt ttccttgaca gctgggggag agagaggctc
      601 tttttccacc agagcccgag ccactgaaac cgctctcgca ccagcaggga ctttgggggg
      661 aagccacgca gctctggctg ccggctgaaa caggagccct gctctctcca ttaggtgctg
      721 ttaggtagcc gagttcaggt ccttctggac cagggaaatg aggggaaaag c
//
LOCUS       KCOD01003810             807 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 423921pyr ultra-conserved element
            locus uce-1960, sequence.
ACCESSION   KCOD01003810
VERSION     KCOD01003810.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 807)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 807)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..807
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="423921pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>807
                     /note="ultra-conserved element locus uce-1960"
BASE COUNT          241 a          149 c          160 g          257 t
ORIGIN      
        1 gtttgatgat gtaacatcag ctcaaattaa attttttgga taaagatcaa gtaaatccct
       61 ttggatggaa agcttgaaat aaggctttgt tgaacatcat taatggaaca ccttctctct
      121 gcactgatta agctcattga ccacgagcaa gaaggttgct ttttatttca ggcatgtctt
      181 gtttgaaagg gataattgtg cccagcagat cttgtttcta acgcttctta tatatagtga
      241 aatacagtaa tttaacagct tgctggggga acaagaattt gttccagttc ctgatttaaa
      301 tgtttatgct aattgctatt tattggctca gatgcaaatg ataggttggc caaagtgaaa
      361 ttttatgacg agcaaactcc ccccttttgt gcaaattgaa aaagtgaaac aagaagagga
      421 tgaaatgagc cgaagatggt cttaatggct gctttttaat ggggaagata aaattaagac
      481 tgatttacgt ggccaactcc cctgttttct cttatcagct catttggcag gaaaaatgga
      541 aaagtaattg ttcctctttc aatgtgggcc tcaaaccatt atttattggc cgaaattaat
      601 cgctgtttat ccttcattca cgtggaaacc gctctatcag cattatgaac cccagcaact
      661 caactagtcc cttgcaattt agccaacagc aagcacagat cctgatgagc cgtgccttaa
      721 ttttctgggc tgtgggagtt aatgaagact cctttcttag gtggacatat ttgtatttct
      781 acgacattaa taacaaaggt ccacact
//
LOCUS       KCOD01003811             682 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 424032pyr ultra-conserved element
            locus uce-3893, sequence.
ACCESSION   KCOD01003811
VERSION     KCOD01003811.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 682)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 682)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..682
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="424032pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>682
                     /note="ultra-conserved element locus uce-3893"
BASE COUNT          183 a          129 c          153 g          217 t
ORIGIN      
        1 aatattaatt ctttattaat tcatgataca gctgctaatt agtacctcca caaatgggca
       61 ttacaccttc gcactcggag gtgttttggg gactgggctg tgcagaggga gggacttaat
      121 cctctccaac cccgccacag caaagaattt caactttcag acaaacaact tcatttacaa
      181 gtgtgtctct aattagctgc agaattagta aagcagagtt ttccccccat agatcggcca
      241 aacccccggg ggaggctctg gaatggagag aatcgcattt ccaattattt tgttgaattg
      301 ctaatttagt tattgtgcct ggcgtaattg tgatgggtat tgggtgtgca attcaatttg
      361 ttttaaatat ttgtgggaag gctgatcagt aatggagctg acctatttca tggcccaaat
      421 tgagagaaga gactaaaaca aaaacagcta caaagcccca gtttgtctca gtttttattt
      481 tgatgtctct catccctctt aagactgttg atgcaacaaa aggtttacat taaaagatga
      541 tggcactttg atcttgggct ttggagggct tacagctttg gtatgtcttt tcttggcatt
      601 ttaatgtgga gatattttag gctaaagagt tttaaacgtg atgcccgagt tcagtagggt
      661 ctgtccccta ccatggttct gg
//
LOCUS       KCOD01003812             264 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 424135pyr ultra-conserved element
            locus uce-5137, sequence.
ACCESSION   KCOD01003812
VERSION     KCOD01003812.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 264)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 264)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..264
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="424135pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>264
                     /note="ultra-conserved element locus uce-5137"
BASE COUNT           90 a           35 c           47 g           92 t
ORIGIN      
        1 tgtaatactt taatgaagac cagtttaatt aaattaaatt tctccctagt ggtaactcaa
       61 tcaaaatgca ttctaccctc attatgttat ccgtaggagt ccaacatttt aagtgctgta
      121 agagaagctg gttttaatga gaatggtcat gacgtattat acttgagagt caagttacag
      181 aaattttaaa tgtcatataa tgaagaacta tatattaaga tgagagggta gacatttctg
      241 cgctaattgg gtctatttaa tatt
//
LOCUS       KCOD01003813             974 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 424357pyr ultra-conserved element
            locus uce-1357, sequence.
ACCESSION   KCOD01003813
VERSION     KCOD01003813.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 974)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 974)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..974
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="424357pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>974
                     /note="ultra-conserved element locus uce-1357"
BASE COUNT          259 a          206 c          191 g          318 t
ORIGIN      
        1 ttattaacta cctcttcttc taccaaagtt ttataaattt ccatggtttt ataaatttcc
       61 tgctgttggt tacagtgtaa tgattctggg acccgattta tttatgatag agactatcga
      121 actgctctgc cagcagcaca gctaaagggg agcaatagat tcacatttct aaaccatcat
      181 tttgatgtaa ggacattagt agcaaactaa ggtgcattga tctggcctgt ggggtcagga
      241 ttagctggaa tagccagtgt ctctgctgga gtagtggtta ttcctgcctc tcagctatgg
      301 ccatttcaaa ggtcaggtgc cctgtaccca cttggctcag aggaattaga cagaacatga
      361 gtctctgggc tgattactta accaaagaca aaataatgag tcctaagcaa atactgacta
      421 attgaaaggg ctgtaaatcc attacatatt ggtcagggat aatcaggagt atttaatcac
      481 ttttatctat tcaggagcac tgaagctgca acagcaaagc cctgaacctt gccatgtgct
      541 tattattctc atcattatca aaattacttc acagctgttc tttgctacat cacctcagct
      601 ggagatttac taacctgtaa aatgttttta atttggaagt cgagtgagtg cgagtggagg
      661 gtttttcatt tagctgtagg gtatctttag acgagcagta cagtcagaca gcgcagggcc
      721 acaaataaac aaatttggtt tgtagatatc tccctgttaa ctccgtttcc tcttacgaaa
      781 tttgtgatat cttgttttcc tccctgcctt tcttgctctt tgaaagcatt tgacacttac
      841 tttttaaaca gtcaactgcc tcttgcttct cttgagaaaa gtccttctgg ctttttgaaa
      901 tcccttttcc tctctctccc gaccctctcc atcctgcatg aattaaggaa atttgccatc
      961 actggtgagg atgg
//
LOCUS       KCOD01003814             677 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 424468pyr ultra-conserved element
            locus uce-7148, sequence.
ACCESSION   KCOD01003814
VERSION     KCOD01003814.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 677)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 677)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..677
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="424468pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>677
                     /note="ultra-conserved element locus uce-7148"
BASE COUNT          217 a          126 c          123 g          211 t
ORIGIN      
        1 aactaaaagt ataaaaactc aattaagtac ttgttcaata taatcataaa catgggaaca
       61 catttcctac cacacgtgca aatgtttaat ttagtgtcct ttgttgtgac ctatggcagt
      121 ttaacgttac gaaaactgat ttatttcagg atcagacaaa ttatatagaa tctaaccttg
      181 ctatacaggt tgcccttgga tattatgaag cctgaccaca gggccttctg gaaacagcaa
      241 atgcttcata agtgtcagct catggctaaa tcaatgttta tgcattgata cctttgaata
      301 gcaaacactt gctgcctgca agctaaacaa tgtttttatc tgtttgccta tttctggtcc
      361 ttcaaccaca gcacagagtg ttgcaaatcg catttagtaa caattatctg ctggaatttc
      421 gtgaagagga aagtagcatg attaatgaaa agtgacacac agattacttt actatgccag
      481 tcgccttggt gaatgggcga ctctgctgaa ctgaagcctg ttacttttaa cgaggtcatc
      541 gtgaatgcta aatgcttgaa agattagcta ctacaaatgt tccagtatta cccactaatg
      601 aactgcaggt agctagttaa atataatgat acagttttca cctttgaaac aaagggtttt
      661 ctgtcaagat gtttaaa
//
LOCUS       KCOD01003815             450 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 424571pyr ultra-conserved element
            locus uce-7467, sequence.
ACCESSION   KCOD01003815
VERSION     KCOD01003815.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 450)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 450)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..450
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="424571pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>450
                     /note="ultra-conserved element locus uce-7467"
BASE COUNT          130 a           98 c           77 g          145 t
ORIGIN      
        1 cttcctgatt ttagcaaagc cctgcctttt tccaagcagt taaaagcaag actgacagct
       61 ttatagatag ggaaatgggc agataagata aacacgcaca atacaaactt gtccaaagct
      121 cttacagtct ttctctgcaa cacttccagc tcattaaatt acagtattac tatagatttg
      181 cagcaaaatt atcttttatc tcgtcttctt ttaaagctat ttggcatttg ctggtatttt
      241 ctattataaa tctaattgca gattccaaac agacaagggc tcattaagcc ttaattatgc
      301 acatgttgtt ttcaacaaac attttcattt ggactgctgt gagctgtaat tgttccgaag
      361 gcactgcagc ctcccattac ccacctccct gggatggcaa aagctactca agtaggtcaa
      421 aatctgtttg gaaccttggg ttgtgctgct
//
LOCUS       KCOD01003816             760 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 424683pyr ultra-conserved element
            locus uce-266, sequence.
ACCESSION   KCOD01003816
VERSION     KCOD01003816.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 760)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 760)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..760
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="424683pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>760
                     /note="ultra-conserved element locus uce-266"
BASE COUNT          230 a          147 c          180 g          203 t
ORIGIN      
        1 caaattaatc tcttaacagg aaagtttgtg gccaaccttc tgtaactcat atctgtgagg
       61 aaacaggttc cccatttgca gacagaaaat ggagctgttt tctcttaagc tgagagctgc
      121 ctattgtgta ggtaattact agaaggcctg tgttgacctg gcaatgaggt agtatatcta
      181 aatacctgaa gtgaaggaga aaagcagaaa tgaaagcaga ggccccatct gttagactat
      241 aatgattgtg ctatttgaag gcagaaaggt ttgtctgaag cagctggttt ctctccaagt
      301 gaccttttag catttctgct tttgctgtct gacagatgtg tcaactcaat aatttcaaaa
      361 gcccctgagt aaataaccaa ttgtgagcaa ggatgaccca aagcgatgac aaaatgggtg
      421 cacacacagc acattacaga acataatacc tactgaaaga acaggcaaca ttatcgaaga
      481 ggaaaacatt ttactcttta tttttgagta aatggttttc ctgctcacag atcagttgtt
      541 ttcgaggacg tgaatggaag ggcattgtgg cgtgtttgcc cttggagcat gtctgtaagc
      601 tggctgcagg actcaggtgt catctcagag ctcaaaatgg acttcagctc cctcccttgg
      661 cccacagatg ggaagaagga ctgaaggcca cagcttgtga attattgggg aactgcagag
      721 aggtgactgc aatcagacaa gacccaatca agtttaaagt
//
LOCUS       KCOD01003817             675 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 424793pyr ultra-conserved element
            locus uce-7444, sequence.
ACCESSION   KCOD01003817
VERSION     KCOD01003817.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 675)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 675)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..675
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="424793pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>675
                     /note="ultra-conserved element locus uce-7444"
BASE COUNT          207 a          116 c          134 g          218 t
ORIGIN      
        1 ttaataagta gacattgcat aaaaatgaca caatccagca gttatttggt aaggccagca
       61 taatcataaa tttaccatcc atgcttttcc aaaaatacta acccatattg ttctctctgg
      121 acctgttgca gggatgacta atccagctgc tgaggtctcc ctttatgtgt ttgatggaac
      181 acttggcttg ctagactaca gctgtgtgtt tatgtgcagt gcacacctgc aggggcctga
      241 caaatagctg tagtatgcag agtatacaaa attaccctgg cagtgctgca aataaggaag
      301 tttctgtttt gaagtccata tgtgtgtgag cttgagatgc cagctggggt atttatgttg
      361 cattgcacag atgtaaaact gccaactgat tttataccaa ataaaggcta atctttttat
      421 acatacttgg tgtcagagtt atgaagtggt acataagaat gttctcacga cttagctctt
      481 ttaaaataaa agctgacatt aaaaatgctc gaatgcacaa tatgcataga tgctaaagac
      541 aaaatagata tctgctgtag gatggtattt taaaggtttt attattggtg atatatagtt
      601 tttagctgca cataatcagg acttgattta ttgtatgcat atacactatg ctatatattc
      661 ccaggaagtc acttc
//
LOCUS       KCOD01003818             566 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 424901pyr ultra-conserved element
            locus uce-4540, sequence.
ACCESSION   KCOD01003818
VERSION     KCOD01003818.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 566)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 566)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..566
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="424901pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>566
                     /note="ultra-conserved element locus uce-4540"
BASE COUNT          124 a          163 c          121 g          158 t
ORIGIN      
        1 tatattgcct catttggggc ctggttcttg cggggctcca aggaaagctc ttggtcaaaa
       61 tctgtcaaag cccctcctgc tgagaccagg cgaccccctg ccaggctgtg cctgggggag
      121 agtcgtcacc tctaaaggaa gctgcttcag agtctcccct catttgcatg gggagattta
      181 atttccatcc cttaaatatg acgaattgcc gagatttcct tcagttaatg cttttaacag
      241 ctcccaataa acttcattaa tcaggccagc tctaggccca acgtgcagcc tggaagcagc
      301 taatttgcct gatgagcccg cgactttagt gaataaacag gtggataagc cgagggtttt
      361 atggccttaa ttacactcta atcagttcag cacttggcgg gcaaaaggga agaaaagagg
      421 tggcagcaga aagagcatcg gcagccaagt ccttcccttc ccacatcagc tctgctctcc
      481 tgcttcaccc tctcctctcc ttccattctt tgtctctccc ctccttcctc ctcttttctc
      541 tccagctatg ttgtttcctg ctactt
//
LOCUS       KCOD01003819             684 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 425007pyr ultra-conserved element
            locus uce-6462, sequence.
ACCESSION   KCOD01003819
VERSION     KCOD01003819.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 684)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 684)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..684
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="425007pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>684
                     /note="ultra-conserved element locus uce-6462"
BASE COUNT          194 a          113 c          123 g          254 t
ORIGIN      
        1 aatttatatg gccattcttt ttctctctct gtggcattag agggaaagca ataatgaaat
       61 gcataaccta catccacaga aaatataact ggtctattta tgattatgat tcacagttca
      121 gtcactagaa atatactaca gttctgcagg tttatgcctt cagcggttat ttgttaatgg
      181 caactcctgc acacattttc ccgcaagtct tttggatttc aagagaaaat gtgtccttca
      241 aacaagttat ttctttgagg gatctttctg taagtgggtt ccactgtgta ttgactactc
      301 ataatatttt ctgttatcat cttgtcaggg ttcaattcat tactctattc attattcaat
      361 ttgttgggcc atgagcatct gaataattga aaactgcaga agtattataa attatagtgt
      421 cgccatgaaa tcccagtttt agggtttatg gcttgacttc aagaaatcac tctctgttga
      481 aatttggcat atgaggtctc atctttaaag cagaatctta tcagtgtgat ggtttttaat
      541 atctctgtcg ctgcacactt aagaactcag gttgcctggg tgcattaagt tataacagtt
      601 tatctgtttt ttaattacta ttagtgatgt gggctagaaa gaaattaatt tattttgagg
      661 ttaataagca atttccagct gtta
//
LOCUS       KCOD01003820             615 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 425117pyr ultra-conserved element
            locus uce-2925, sequence.
ACCESSION   KCOD01003820
VERSION     KCOD01003820.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 615)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 615)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="425117pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>615
                     /note="ultra-conserved element locus uce-2925"
BASE COUNT          180 a          120 c          131 g          184 t
ORIGIN      
        1 ttatgttttc tggtgaactg ctgttaaatc agattttgtt actgtttttt gtttgcataa
       61 agaaggctaa attagcaata ataatttcct ttgcctacaa ggcatatatt gaaaagtaca
      121 attcctggag ataaatgaat ggcagaataa ataatttatg ctaatgaaat tactgcaatt
      181 agtagttcca caatgaccct tttaaaagcc acagctgtta atgtcaggaa gtgctgtcac
      241 cgctgacctt atcataagag aaagtgacaa attgaaaatg cagggaagac caatcctcaa
      301 agaggtctgt tcgggaacga ttagtgtttt ctgaaaacca gtgtgaatta caaccagctg
      361 ctctctggct cggcgtgtct cccatgctgt gccattttgt taagctcgat aacaatagtt
      421 attttgcccc attgagacaa gttgtctcgg gccacttcca gctccaccgg aacccactcc
      481 gtccctcact gatttacaaa tgaaactgtt gttagagggc ttttcagggc tgctgagtag
      541 agacctctca taaggatcat gtgtaaggag gttgtctttc actgggaaga gaggccgtat
      601 gtgtcacaaa caatg
//
LOCUS       KCOD01003821             476 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 425223pyr ultra-conserved element
            locus uce-7580, sequence.
ACCESSION   KCOD01003821
VERSION     KCOD01003821.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 476)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 476)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..476
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="425223pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>476
                     /note="ultra-conserved element locus uce-7580"
BASE COUNT          134 a           90 c           90 g          162 t
ORIGIN      
        1 ctgaaattcc aattaaaagc tgtaatggga gctcagggtg gatctgtacc ataagacact
       61 tctaggtcag gaggaggaat aataataatc ccaagtacgt ttccttattt aactttttta
      121 ttgtgttcag cccgcagctg atttttttta ccttgtaaca tagtccctaa ttgagacaca
      181 tgaagctcat aagaggcttt agacaagatt cagctagcca caaaagtcat tatctcattt
      241 tcatttatta acatgatatt tccaatggat taacgagggt ttcccttttg ttgcctctgc
      301 tgtggcacta gccctaaagg ggctgttgcg tttctccatc tcaagtgact tcttactcac
      361 attagattac agtaatgtac gtgttccagg aatgacattt attctacttc ttgcattaaa
      421 attccctatt tgaagtagct ttaattgctg gaaataggat gaagtgaact tgagtg
//
LOCUS       KCOD01003822             736 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 425334pyr ultra-conserved element
            locus uce-437, sequence.
ACCESSION   KCOD01003822
VERSION     KCOD01003822.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 736)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 736)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="425334pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>736
                     /note="ultra-conserved element locus uce-437"
BASE COUNT          230 a          137 c          134 g          235 t
ORIGIN      
        1 tttatctgct tccttgagtg tatgtctcta gttaatctgg ccatcttcta agccctctct
       61 cttacccagt gcaaacgtgt atagtgccat aatgaaatca tttccatgtc ctatagagta
      121 tttagatcaa caagaccttc acttattaga aagggcagag tagtaatgct tttggcaaag
      181 ccattattgt ggtattggta ttcactagaa aggacagaaa tagaacaaca ctggcctcca
      241 taaacaattc caatttgatc tgtgtacatg ataaaatctt ggcttctcaa tgcatttagg
      301 tgctgtcata gctgttgttg ccaaataaga atgcagtgtg atgttattat agtaaacagc
      361 acttaagcac agctggcaga attgatcagg gccacattag agtgaacttc agcagatgac
      421 tgacgcagca gaaacaatag ctgaatatgc aaacagttct tgcaatgaat gctctgggga
      481 ccattatttt tgactttgaa cagggaaaag gggcagattt gtaacctcct tccacacaaa
      541 agggttctgg gtattctgta aacatctgac tgccatttat aatagtagct agttacaaag
      601 caaaactcta gactcccttg actatttaca tttcattaat tattaaagac cataaatatc
      661 agataagttt gtttaatgtt tcacacagga ttttttttct ttgctagaaa agccttttct
      721 caattaatgt taatca
//
LOCUS       KCOD01003823             331 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 425439pyr ultra-conserved element
            locus uce-120, sequence.
ACCESSION   KCOD01003823
VERSION     KCOD01003823.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 331)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 331)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..331
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="425439pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>331
                     /note="ultra-conserved element locus uce-120"
BASE COUNT           99 a           64 c           61 g          107 t
ORIGIN      
        1 attacttaat ggtttcccag acagcgatgg cctggagaat taaatttcac atctgctttc
       61 atggcgttaa tctctcttct cacatcccgc ctgttatgat gtgcacacga gagataatgt
      121 ttaaactgac taaagcaaag taaaccagac aagtctgtta ttggctttat aattacataa
      181 ttaacttttt gtctctaatc gttatggagg taatggtgct gttaaaatgg gcttctgctg
      241 agcagaaact aaatcaaaaa tcaataatcc atagaatgcc attagggcct gtaacagccc
      301 ttgttggatt cgctcaaatt tttgtactgc a
//
LOCUS       KCOD01003824             619 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 425548pyr ultra-conserved element
            locus uce-6360, sequence.
ACCESSION   KCOD01003824
VERSION     KCOD01003824.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 619)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 619)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..619
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="425548pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>619
                     /note="ultra-conserved element locus uce-6360"
BASE COUNT          201 a          124 c           99 g          195 t
ORIGIN      
        1 ttaagagcag acgtggcact gtatagtttt ggtattaagt actgtcaagg ttcctttcaa
       61 gcaaagaact atttatctac ttaacacaga acataaccaa cttttgtaag tttcatatat
      121 tacatttatt tcaaaatgcc tggcattatt aatccttttt atattgttaa tataaagatt
      181 ctgcttcaaa accccagaaa gtttattttt tgcattgcat gcactgatga actagcctgc
      241 tcagcaagca tttaacagat tagacacttg aacatggttt caggcaatgc tctctcatgt
      301 ttctgcgtat tgcctgataa acacttcaaa gtaaaccgct cataaatatg aaatgaaaag
      361 ccaagaagtc gttatgcaca gctttgagat acaaatctct ttattcccct ctgaagtgga
      421 atttgattga cataatgagt catagatcct gtccagggac acactgcctt atcccctttt
      481 cctcaggaga cggggagtct ttaaagaaat ccacttcaga actttctgat agacagcgac
      541 aggaaagttg aacactacac aaatgtaata ttttatatta atacctacct taacgatgtc
      601 aaagattgac tccaaagcc
//
LOCUS       KCOD01003825             381 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 425659pyr ultra-conserved element
            locus uce-6946, sequence.
ACCESSION   KCOD01003825
VERSION     KCOD01003825.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 381)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 381)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..381
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="425659pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>381
                     /note="ultra-conserved element locus uce-6946"
BASE COUNT           95 a           78 c           75 g          133 t
ORIGIN      
        1 tcaacgaaag agtaatggtc agattggctt tgtatgcctt ttttcctttc tgttgctctt
       61 ttctagattt agcaaaattc agtggtggtg ctaaaacttt caagggaaaa accactggta
      121 aaattgtgtt ttctagggaa ggccgtgtgt gtaaatgaga aacagtggat agcagtggag
      181 tgatctcctg tggccctgct agtacaagct ttccccatat tgtctcctgc ttttatatta
      241 attacaactt gcattatcag ctgtgagtct gtagcccagc aaatagaaaa tactgcccct
      301 ggagacatag cttcttgtat ctattttcca tctccttcta ttgtgctcta ctcagtattc
      361 actgcttttc tcctagtaac a
//
LOCUS       KCOD01003826             449 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 425766pyr ultra-conserved element
            locus uce-6229, sequence.
ACCESSION   KCOD01003826
VERSION     KCOD01003826.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 449)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 449)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..449
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="425766pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>449
                     /note="ultra-conserved element locus uce-6229"
BASE COUNT          142 a           77 c           79 g          151 t
ORIGIN      
        1 cttcacaata ggaagtcatc cgtttgtttt ccagatccta atgcaacggt tgccataaga
       61 acacaaatta tgtgtacatt ttaatgcatc tatgcttcat aattatgcat ggttgtgtgc
      121 tgttataatt gacataaaat ataaaacagg tcaaagagca gctattaaaa ctatttttca
      181 ttttgcttcc tgacagctcc tgacatcaat gccgactgca tttaatagga ccatacaggg
      241 aatgcaaaga tagttatata atttcaacca tattaaagcc tccacaactt gcaacctaat
      301 tatttcctgc agtgtcttgt tgtgttactt tatttggaat atgttcggtt gaagattaaa
      361 caattgggct acattaaatt agcatgaagg gggaaaactt ttggatgtat ttcatagggg
      421 tcactctgtt aggttaaaaa ttatcccag
//
LOCUS       KCOD01003827             317 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 425871pyr ultra-conserved element
            locus uce-1307, sequence.
ACCESSION   KCOD01003827
VERSION     KCOD01003827.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 317)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 317)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..317
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="425871pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>317
                     /note="ultra-conserved element locus uce-1307"
BASE COUNT          107 a           38 c           67 g          105 t
ORIGIN      
        1 tcatacatta gagctaggaa cagttgggga aaaaatgaaa catccagcat tcatttgaaa
       61 aatatattgt actttgaaaa gtgtctaagc tggagaagtt gcattctgcc ctttaaaagt
      121 ctgatggaca aattggatta ctagtattgg attaaataac aaatggttag aggagaaatg
      181 agaaaagctc gctgtgatca caggctttaa tattttttgt tacttataaa gctgaagggg
      241 tctttaacca gttattaaag tcaggattaa tttgtaatgg tccaacttac tagctttaaa
      301 agggttttgt tgttgtt
//
LOCUS       KCOD01003828             339 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 425974pyr ultra-conserved element
            locus uce-3585, sequence.
ACCESSION   KCOD01003828
VERSION     KCOD01003828.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 339)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 339)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..339
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="425974pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>339
                     /note="ultra-conserved element locus uce-3585"
BASE COUNT          109 a           72 c           48 g          110 t
ORIGIN      
        1 gaactcctta aaggcttgca agaaaatcct ctttcctatg ttgtcattaa taaaagattt
       61 ctatagactt cagcctttca acggtgacat acaatttata gtacacacaa tgcattagcc
      121 catagtgctg ctcaattttt ttactattat gaaaactaat aaattcgtca agctgaatta
      181 agcatacaaa tcagatgagg cataacagat tacatattga agcgccgtgt ctcccgagcc
      241 taaatgaaat ttcaatctaa taattccttc ctggcccggc cataatttgt ttagagatgt
      301 tgttctactt ctttccaagc gctattcaca ccataatta
//
LOCUS       KCOD01003829             530 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 426079pyr ultra-conserved element
            locus uce-6126, sequence.
ACCESSION   KCOD01003829
VERSION     KCOD01003829.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 530)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 530)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="426079pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>530
                     /note="ultra-conserved element locus uce-6126"
BASE COUNT          147 a           96 c          102 g          185 t
ORIGIN      
        1 ttttttcctt tcctctggct ttgtttcttt gtttatccct taaatatttc aatctcttat
       61 ttctagtctc agcctaacaa agcctgtttt cttttcttgt tctgatgtgt gcctgcctcc
      121 ctgtgagctc ccagcacacc tctcatgagg atgtaaaatc taagaaccag atctttgaga
      181 tttcaaaata aaataaaagt aaactctgct ttaaaaacac tttagcagga aagccaggct
      241 aattgtaaat caatgagtct taaaatgcag cattgatctc cagttagaag tttgaagggg
      301 aaagcagtaa ttactgtact gaaggtagac tcttagcaag ttctgggcag aaggaaggct
      361 cattagggca gcacttcaga atctgagtaa ttagtttaaa aagtactttt gtggtgttat
      421 tcccatggct agaaattatt ggagtcttca cagatttata gttctgctct gataaagttt
      481 gatttattat tgtgtttggt ggggaagatc cttcctacac agtcacttgg
//
LOCUS       KCOD01003830             513 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 426186pyr ultra-conserved element
            locus uce-6860, sequence.
ACCESSION   KCOD01003830
VERSION     KCOD01003830.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 513)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 513)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..513
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="426186pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>513
                     /note="ultra-conserved element locus uce-6860"
BASE COUNT          150 a          135 c          111 g          117 t
ORIGIN      
        1 cccgactggc tcttcgccac ccacttgccg aacactaccc agtcgatgga agccattaat
       61 cgcactgccc tccctatcag gagactatgg atggatccag acattctcta tgcttgatgt
      121 caccaaggac cactttactg cgatcaggat tccaacgacc acctaatttc caatctttca
      181 actcttttcg accaggacct cgttattcgg aagcgttaca ggaagaacag ctctcaactt
      241 aggaatcaga tctcgttaac gctctgggac cgctgcaatg tggcacttta aggagtgcat
      301 cgattacgtc tagaccggca aacacagatc tagaggtggc caagtgacat tgtaggagct
      361 gactggaaag tcaaccaggc ccgaccaaga gtgaccaaga cagaacgatt aggataaccc
      421 acaggcactc ctcgtcataa ggccaacgac acagataggc tggcaaataa agggtttaat
      481 atgtggttaa aatggatttt atatatcctc aaa
//
LOCUS       KCOD01003831             715 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 426296pyr ultra-conserved element
            locus uce-3487, sequence.
ACCESSION   KCOD01003831
VERSION     KCOD01003831.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 715)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 715)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..715
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="426296pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>715
                     /note="ultra-conserved element locus uce-3487"
BASE COUNT          215 a          150 c          141 g          209 t
ORIGIN      
        1 ttagtcctgg ggctgcctgg ttctgtcaag actccccacc tcttgtccct gcagtgtgtt
       61 tcagctcatc atcctgtgtg acatgtggca tttagagatc tcgacatctt acatttctta
      121 aaatgtcctg ggtcacattt aaaacaaggg cagaacatga catcaggctc cacgtcaggg
      181 agagctgagc agtagccaag atctgggagc tcattggaaa gcattgtaaa atgttaattt
      241 gccattgtcg acactgaaga cagaaataac acttcagata aacaccacag agagatggta
      301 gttctaatca aaggcacagc acctcctttc atgcttgcga actagggctc caattatgtt
      361 cactgctctg aagctgaata gagctgcttt gccacacttt ccaaattgag aggagaggca
      421 gcagtagtgt cttccaaggc acagttccaa ataacaatta agcagaagga atcagataag
      481 agccaaacat gaaaatgcag gagttgaaaa taaacttttc atttttttgt aattgcaata
      541 gcttttgttt tgcttctgta acatggctgc ttagagactt ctattccttt atacacagtg
      601 tcactgtggt gctagttttc tgcattcatt taacagaaaa atatctgaaa tttaaaagtc
      661 tatgatcctt cggtattaaa attagagcct tcaccctaaa acctctttaa caaat
//
LOCUS       KCOD01003832             710 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 426406pyr ultra-conserved element
            locus uce-1895, sequence.
ACCESSION   KCOD01003832
VERSION     KCOD01003832.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 710)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 710)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..710
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="426406pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>710
                     /note="ultra-conserved element locus uce-1895"
BASE COUNT          240 a          125 c          115 g          230 t
ORIGIN      
        1 ttaaatgaaa gataaataaa agtttcaatt tgggaacttg agtgtattgt tgtgaaaagc
       61 ctagtcagtt tttcacagaa agaagcatag agattcctca tgctttatgc aaacagtagg
      121 ttttagataa caggatcagg tccacaattt gcctttaaat aaatgccacc accatacaaa
      181 ctacaaaggt gaaaaaatgc tgtatcttgc attttcctac ctcctgtggc tagggacaga
      241 atgcagacat gccacaataa tgttttttat ttctactgtt caaaccatat taatgagaac
      301 atcattttgg agaactaatt atttctattt gtcttgtgtc acactttcta attcccctat
      361 attagcacag ccaaagcaaa ttaattgctt ttccagcagt tgaaccttgt ccaagaatga
      421 gctcacattc tcttccagtt ttgcagtttc taggagtgca ttgtgtcaaa aatttctctt
      481 gatactaaac atagcccaga gaatatcttt gcagacttct gttgctgctc acttgatgaa
      541 atttataagt ttaagtgacc cactaggaaa gataaagttc ttagctgcaa gattatacat
      601 caaaacagtt aaagtgaaat taaaattaaa tgaatgaatc tcactgaagc aaaaaaagca
      661 gtaattaatg gttcccttaa ttgtcttcat aaaatatttg catgggtcta
//
LOCUS       KCOD01003833             627 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 426515pyr ultra-conserved element
            locus uce-148, sequence.
ACCESSION   KCOD01003833
VERSION     KCOD01003833.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 627)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 627)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..627
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="426515pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>627
                     /note="ultra-conserved element locus uce-148"
BASE COUNT          144 a          120 c          139 g          224 t
ORIGIN      
        1 acatctgcgc gttttgatgc gggtcttcaa agttcagtca gtaacccacg gacgccatct
       61 tgttaaaatg tctactgctg tatccaatgc tcatgccctt gagggtctct ctctcttttt
      121 tttttttaat ttccattatt gttataaaga acattgtgac tttaatatta gcattttgct
      181 ttcaacagca attagcaatc tcttggtttg ctgtttggta aagcatctgt taatgaggtc
      241 atctagttta aaatcccagc tactggaaaa taacagggag gaggtcaaat ctatcatttt
      301 gtgtatattc tctgctctct tttcagtttt ctaaagaaaa gatatctttg ttatccacaa
      361 taagtcatta tgacccgtta ctggccttct gtattttcta ccacctcaag atacagtaag
      421 ttctttcttg aagtattgaa atatgacagt tcagttaaaa tctttgcaca tctgaggacg
      481 aggaattggt ttcatttttg ttttcggagt ttcgagttca gttttagcga ggagtcgcgt
      541 ctatggtgga tggggttccc ggggtggtgg acctcggagt agctgctggt ggagtgtcga
      601 tggggctccc ggccccgctg ctgggtg
//
LOCUS       KCOD01003834             763 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 426621pyr ultra-conserved element
            locus uce-5639, sequence.
ACCESSION   KCOD01003834
VERSION     KCOD01003834.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 763)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 763)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..763
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="426621pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>763
                     /note="ultra-conserved element locus uce-5639"
BASE COUNT          266 a          138 c          140 g          219 t
ORIGIN      
        1 ccccaaaagt ctaacaggag actgaaggac tgctttgaga atcagtaatg ttttcttttc
       61 ctaatgagct taccccacca gaagaagaat ttaaccaaga tataaagtct tccacagtaa
      121 cagaacacag agccctaatc aagaaatgga ccatttgttt aaaaacagtc tattgagcat
      181 gctctacctt gcaaatggaa tatgccaagc tctgtcacag atggcaagct ttgacagttc
      241 ccatccgtag cgtcgatact cgacagttca gcacaagatc agtgacattc tgtctcatta
      301 gagccacgct aattatcaca gctagtttca ggggaaacca tgtgttgcaa tggtcaattt
      361 gaaggagtct gtgcatcaac aaactggtaa taaggatcag acaccttatt atatgacagc
      421 atgctgccta tgatctgatt tactgaatca gaggtactga ggcaacactg aagcctgatg
      481 ggttatggaa tcgcgtgtac acaatgtgta gctgaaatat gcattaaaaa taaaagggag
      541 ctataaagaa acaatacaaa tttaaaatgg taaagttata atgtggagtt ttttcatttg
      601 tcattaagac atgcagagat gttagagatc ttgtcagcca gttttatctt taatcaaatc
      661 atataagata aataattcaa aatgaaaact gtaaaattat ggattatgct aaattataat
      721 tcattccata ctctgatttt tcagtttcaa taacatgtac caa
//
LOCUS       KCOD01003835             661 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 426730pyr ultra-conserved element
            locus uce-347, sequence.
ACCESSION   KCOD01003835
VERSION     KCOD01003835.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 661)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 661)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..661
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="426730pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>661
                     /note="ultra-conserved element locus uce-347"
BASE COUNT          219 a          146 c          140 g          156 t
ORIGIN      
        1 aacacctctg acaccttccc aatcacaagg aaccactgcc actgtcagga aatcacatct
       61 ctgccagctc tcaggctggc agacacatcc atccatacgt ataagcaatc tgtcaacttt
      121 gttcaacaat taaagtcatt aaaaacataa aagcgaccgt gaggagtgag ggcatttggg
      181 cctgttggga gatccagtgc cccacatgcc ttctgccact gctgctacag ttaagcaaac
      241 tttacagcca gtcaagccat catccaacag agcctatttg ctgagcaaca gtggagcttt
      301 gtggtttgcc tcacagttga cagtaagtta tgagcccttt gtgagcacag gggaaggaaa
      361 acagagatcg gaatttggca ggaaaatata atacagaatt ctcctgtcta tggaacctga
      421 atttttgtga aaacaatcaa gcattgttga aagaaagaaa agcaactttg acagatgaaa
      481 tatagagggg ccccttttag gaaaacagta aacaaagcac cattcaggcc aggtccattc
      541 tgtcatttat aaagatagtt tcttctgtgt ggtgagagtt tacagcaaag agttcagatt
      601 caacaaatca agtgtaaaat ctcccacagt aaaacagcca gctaggaaag gacaggaatg
      661 c
//
LOCUS       KCOD01003836             730 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 426822pyr ultra-conserved element
            locus uce-2907, sequence.
ACCESSION   KCOD01003836
VERSION     KCOD01003836.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 730)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 730)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..730
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="426822pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>730
                     /note="ultra-conserved element locus uce-2907"
BASE COUNT          207 a          134 c          149 g          240 t
ORIGIN      
        1 ttttgtgcct tcagtgatct cgtattcctg ttgtatgacc aggtttttcc atgaagcact
       61 gtgggctttc ttgttcccct gtttgtttaa ttttgctctt aaattttaca gtgatttcat
      121 gccatgtgta gactagagtg ctggagctga aatactgtgc agatgccctg ttaagtaaat
      181 gctcttttta tacatacagg tacaacagaa tagctcggga atggactcag aagtatgcga
      241 tgtaattaaa gaaattattg gataacctct acaaataaag ataggggaac tctgaaagag
      301 aaagtccttt tgatttccat ttgactgctt tctatgagcc cacgcctcat cttcccctgt
      361 gcacatgttt acctgataca gcagtgctgc gtgttgtaca tacttggaac aacaaactag
      421 aaatactgta tttccccgta ccaacattga ctcctagcag agaagtgtgt gtgtgaaaag
      481 ctggttcttc agtcataact ttgtgagcct aaaagcattc cttgatgagt taaattggga
      541 aatcgaatag tgttgctgat ccatgaagga ttttaagtgg aatcctttta aactcataac
      601 agttatgaaa agcaaggtga agaacttgaa gctgtttctg tattcatttt attctgaagg
      661 acctacacct taggtaaatg ttatgaccaa tgagaaactg tacccacatc ctgtgtttaa
      721 ggtctaagtt
//
LOCUS       KCOD01003837             560 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 426926pyr ultra-conserved element
            locus uce-7276, sequence.
ACCESSION   KCOD01003837
VERSION     KCOD01003837.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 560)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 560)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..560
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="426926pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>560
                     /note="ultra-conserved element locus uce-7276"
BASE COUNT          186 a           91 c          101 g          182 t
ORIGIN      
        1 aagagaaggc ttaaataaaa agaaactttg aagtgcatgg atcaacattt gttacataag
       61 taggtttttc agaataagtc attctccact ataacataca gcagagtaat cctcatttca
      121 ctacaccatt ctttttgtgt gtatgtttta tttcttgcat caatgagtca taagatgcaa
      181 ggaattaatt tgaatcttga aagctaaaag gaagagaagc cgatatgtgt agtacagatt
      241 cttgtatgta actacataac atattttctt tccacaggag gtggttatga caaattagaa
      301 gtctgaaaat tttctaatgg tgtaaaggct ccagctgtca ctagggagat agtgatcaga
      361 tttcatagct gcatggtccc atggcaccac taagagttcc atatggtcat ccaaatgttt
      421 caactaaacc caattccacc atggcttctg cttttagaaa aataaaattc ttctttgtag
      481 gaatttttca taattccacc aataaacaga actttcttga tttggtagaa aataattgtt
      541 tcaggttgaa gcgggttgaa
//
LOCUS       KCOD01003838             683 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 427142pyr ultra-conserved element
            locus uce-3647, sequence.
ACCESSION   KCOD01003838
VERSION     KCOD01003838.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 683)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 683)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="427142pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>683
                     /note="ultra-conserved element locus uce-3647"
BASE COUNT          202 a          119 c          115 g          247 t
ORIGIN      
        1 ttatctgcag tcagttaata tttttgtatg agcagttctt tatatgctta gaagacactc
       61 aattgccaga gtttgaatac acgctagcct tgaaaatagc cctagtatta agaaatacca
      121 ttaaaacacc agcagttgct atggggtgtt ttgtaccttc tagttaatgt ttgtcagtct
      181 atgtatagat ataatatgat atagtttcat taaacatgta ttataaaaac atttactctt
      241 cactcttttt tgttaggcag aagaagctat ttgtttccta attgattttc tacgttagtt
      301 cattgaatag ataagtagtg cctgtgatat ttgattacag agcaaggcac ccatttaacc
      361 ttccgttctt tcctggccag gatttcaaat acaatacaac gtacctccct taggctcagt
      421 aggattagac tgctagcagt aatccctgat gctatgaaat agacctgata gaacttcaac
      481 tcacttgttt aggattatgc tcatgaattt cagtattaac cctttgggaa ctcgtgtgat
      541 ttatgcagct atagtagatg catatcaaag cttttttaaa gaattcactt ttgcttggtg
      601 atcaaagtgt aaaattcaca ctcctatagc ataaatgctc agatttattt taattctaat
      661 gttcaggtgc cttttgcagt tca
//
LOCUS       KCOD01003839             537 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 427249pyr ultra-conserved element
            locus uce-7778, sequence.
ACCESSION   KCOD01003839
VERSION     KCOD01003839.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 537)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="427249pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>537
                     /note="ultra-conserved element locus uce-7778"
BASE COUNT          186 a           84 c           98 g          169 t
ORIGIN      
        1 ttctaagact ttcctaaaac atgggtttgt aaataaatta tttttctgcc atcaatcaat
       61 gctgtcttca gacaactttt atttatttaa taaattactt caataaattt ccaaaggatg
      121 gtagtctgtt taggccagcc tattaaaagc attaagattt gagcactggc tgttaaaaaa
      181 atggcaatat cacgaagtta aacaaatgcc aaaaaacatt ttccagagta ctgggattgt
      241 aacaatacca ttaatgaggg caaagaggtt ttaatgcaat ttgcacattc taaagtttca
      301 aaaagaggtt ttgagttagt gcattattaa tgttctgaac atctggaact atgtaagagc
      361 cacagacatt gagcaagtgc agggtttccc cactaggtct gatgctgact gatttcctcc
      421 ctagcctttt tagaagtttg agacagtaaa atgacaatat ccagataaga gagaaacatt
      481 ccacagcgtt gtgtatggaa ccattaggtt gttaaaaggt gaatttgaaa ttaaata
//
LOCUS       KCOD01003840             330 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 427355pyr ultra-conserved element
            locus uce-6981, sequence.
ACCESSION   KCOD01003840
VERSION     KCOD01003840.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 330)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 330)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..330
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="427355pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>330
                     /note="ultra-conserved element locus uce-6981"
BASE COUNT           96 a           66 c           48 g          120 t
ORIGIN      
        1 ttaagagtgc aaatattctg cagtcactca tgaaaagttt ttaataataa atatctaaca
       61 attaatgggc tggtagctgc agttgtcttc agggcataat atctaatttc cttgcaatgt
      121 ttcatatcct tacttttcat gctgcaacag tctatcatta aaaccaaacg caggtttcta
      181 tcacttttat ttatttttca aatcaactta taaatcagtg ccagaccttg ttacagatga
      241 gttccaataa attatcggct gtggacaaat tctgaatgta ttctctgttt ttttttccac
      301 ccactgtgct cccacccttt gagactggaa
//
LOCUS       KCOD01003841             594 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 427466pyr ultra-conserved element
            locus uce-1163, sequence.
ACCESSION   KCOD01003841
VERSION     KCOD01003841.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 594)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 594)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..594
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="427466pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>594
                     /note="ultra-conserved element locus uce-1163"
BASE COUNT          178 a          103 c          119 g          194 t
ORIGIN      
        1 ttttcctttc attccatttg acgtttatga gagcatttgg gaaaaaaaat aattataatt
       61 tgggcaaagt aatttttata aataatttaa aattgtttaa tgacttctta tctgaagcct
      121 ttcctatctg gctctactgt taggaattaa aaatgaagca ggcaagatat cctgacccgc
      181 tccagccttg ctaatgctcc atctacaaca tttctaatta ggcagaaatt catgtacttc
      241 agctaagtgg taatgaaaag tgattcattt gctgaataag agatgagagt gagtgtaatt
      301 agctgactgc ggtttttaat ctttcaacaa ttcaatgtgt ttaaattagt ttcaaagaat
      361 aggagctttc aagtgttgtt acatcaaagt aatcaaggca ggcttcaacg gctgagtagc
      421 ctgttctgaa acctttacac ttaataatcg tcttcatccc ctctctttgg aacagatggg
      481 aagcctcaga ctggttcaat gtatgcagaa ttgtggtggg aaggaagcct tccaggaggg
      541 gctgaggaaa gctaaacctg actcagtgtt gttatgctag tgcttctcaa tcct
//
LOCUS       KCOD01003842             337 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 427574pyr ultra-conserved element
            locus uce-6552, sequence.
ACCESSION   KCOD01003842
VERSION     KCOD01003842.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 337)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 337)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..337
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="427574pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>337
                     /note="ultra-conserved element locus uce-6552"
BASE COUNT           98 a           55 c           69 g          115 t
ORIGIN      
        1 ctttttaaag tttccaacga gccaggttaa atattctgta atcagtgtaa taatacacct
       61 ggactcgctc gcgagatatc tgccttttgt actgcgacag gacattaata gtaattattc
      121 tgctttgtaa ttggagcttt aaatactaat tcaaacagcc agaggaaaac caattagtgc
      181 taatttatct ctatgtgttt tggagagcct gtgtctgtca tactgtgaag aaataggttg
      241 gtaattagta cagttgggtg gtagatagaa gtaattatca gattctttca tgttctttaa
      301 aggaatctaa aggctgcatg actcttcctt tccgagg
//
LOCUS       KCOD01003843             351 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 427681pyr ultra-conserved element
            locus uce-3925, sequence.
ACCESSION   KCOD01003843
VERSION     KCOD01003843.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 351)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 351)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..351
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="427681pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>351
                     /note="ultra-conserved element locus uce-3925"
BASE COUNT           89 a           87 c           78 g           97 t
ORIGIN      
        1 gaagtctgct tgacatcttg aagcttaaat aaccgtaagg cattgttact ccctggcagc
       61 aaagtgcctc gttatgcctg attgagctaa ttgctttgaa ataggatata ttatctataa
      121 ttatagagat cttggaggag acggccagcc ttttctttca tcttttccaa gtgcatcata
      181 atgtcgcgat caaattaatt taggccactt gaaatagtgc cttcctttca gcccggctcc
      241 tccgaccctc aaagagccgg ggacgcctcg gcgactggag ttcggccatc caaacagctc
      301 ctggtgacct cccgaggaca agtccaggtg cctgaagcct taaaagtagt t
//
LOCUS       KCOD01003844             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 427789pyr ultra-conserved element
            locus uce-7684, sequence.
ACCESSION   KCOD01003844
VERSION     KCOD01003844.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="427789pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-7684"
BASE COUNT          160 a          133 c          168 g          179 t
ORIGIN      
        1 aaaggctgtt ctgcacacaa gtaaagcagg tgcacgttaa cccatttact gtaagcatgg
       61 gtattattca caagtccctc gctcctgtca tttgcccttg actgtggtat aacatttact
      121 gcgaggccat gaagaatcca tatgtccgtg tgatctgtca ggccaccaag aagccagggc
      181 ttgtggggta gcataaggat atctgaaggt gacacatgct gtcatttgat gaacagagat
      241 gcagaattct ggcagccact accttggcct tgacaacttg tgatggtgac caggtggggt
      301 gtgttatctt aatagtctgg agctcttgtg aattatttgc tgatagatgt aaacagctgt
      361 tattcttggt aatggaaagc aattagaaac atctgtactc ttggcgatga gtaatgcctc
      421 ccatcttcac tgctcccaag tgccaattgg aaataactac atcatcagga tgggctggca
      481 acccgcactg cattatggcc tggtttgtac tgagctgtga agaacaagag gtgaagcaca
      541 gtggaaagct tgcttgggtt tgtttcctcc ttcaggatga gggaagccag gtgctccata
      601 gctcaggtta ctcggtgttc aggagtggct tctggagctg
//
LOCUS       KCOD01003845             856 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 427895pyr ultra-conserved element
            locus uce-393, sequence.
ACCESSION   KCOD01003845
VERSION     KCOD01003845.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 856)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 856)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..856
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="427895pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>856
                     /note="ultra-conserved element locus uce-393"
BASE COUNT          255 a          168 c          173 g          260 t
ORIGIN      
        1 atttcacatt tactccaaga aagttcatgc taaattgagt ttcgctgctg tcagtatctt
       61 tattaatcag aataggaaaa gtatggtgtg tttcccacct ttttgcagaa gatcgatttt
      121 tacagcaaga cttcctcttt cttttcttgg agcgacatgg agagttatgt acgatgatat
      181 caagtcactg acttcaaaca gaagacaaat tcactaaagt gaaaatgatt gtgatagttc
      241 tctaatttcc cccacagtgt atgtaaaact gacttttaaa gtgtttagtg gataatggat
      301 catgtaaggt cagtactagc catagctgtt atggctatta ttttctcctt tcatgggagg
      361 gtgctcagca aaatgagatt gtcacgctct tttttttttg agaggacagc gacagacagt
      421 taaaagcctc ttcatgtaag gatgttattt cataaagaca ccagcactgg attatcccct
      481 tcactttaaa cttcagccag cttgtacaaa gagataaaac aaaatagccc caatcccagg
      541 ggtggagaag tgctggccag atctgcccat gtccacagct ttcattttga ttagtcacat
      601 gtgaggaaaa ttcacttagg ctgagaggta aatttaatac cagttatgcc catgctgttc
      661 atatcacaac cattttcaca tgatgccact taattcccta agaagcagaa aggtaaatcg
      721 gtggctggcc agctaaggtg tcataatgca ttaggaccag ggctcgctgc aggggataat
      781 ggttctgatt gctgttgact catgtctcca ccaactgcct catgtaaaat aagtgacatt
      841 taaaaggcat caagat
//
LOCUS       KCOD01003846             639 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 428006pyr ultra-conserved element
            locus uce-4465, sequence.
ACCESSION   KCOD01003846
VERSION     KCOD01003846.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 639)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 639)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..639
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="428006pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>639
                     /note="ultra-conserved element locus uce-4465"
BASE COUNT          188 a          106 c          140 g          205 t
ORIGIN      
        1 aaatctgttc agtctcacgc ctttgtttta ggttggctaa accctcgacc cttattcttt
       61 gtggggtcac gctcaggcaa ccgggcagtg ctgaatgagt taagtcgctg gctgaagttt
      121 ggcttcatgc aactaaattt gaggcctggt aggcattagc agggcacagc acatttacag
      181 agcttaatta gtacgcgctg taattgttca tggtctgcca gaaggagtaa tgttcaggaa
      241 aagtggagtc gttcttctgc agtctttagt tttaaaacga taaatcactt gcatatttgt
      301 gcagtgattc aaatggagct gagacctctc catctcaaca tgtggtaaat tgtaaagtca
      361 atgaattgca gatgtagggt acagcagatt ctctaagaaa atgcagaatg aatgggaatg
      421 ggtgatgcta taaatacgta ctgagcttgc tgtgccaaat atgataaact aaagatatta
      481 gcaattttct tctaaatgta tttattttaa atatctttaa actaagtgta ggggtaccat
      541 gttacttcac ttagtgaggt ttttattaat gttccagaac aatgggtttc atacggaaat
      601 gcgcattata gccatattaa tataaattaa ttcatcatg
//
LOCUS       KCOD01003847             509 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 428113pyr ultra-conserved element
            locus uce-2190, sequence.
ACCESSION   KCOD01003847
VERSION     KCOD01003847.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 509)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 509)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..509
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="428113pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>509
                     /note="ultra-conserved element locus uce-2190"
BASE COUNT          120 a           90 c          107 g          192 t
ORIGIN      
        1 tcccttctaa aaattgtagc tgaggttgta gtgaaaagaa ctgtgcttct tgcctccctg
       61 ttatgtttgc ttgctttgtg ataggagttt ttgtatgctt tactgtgact gagggcttct
      121 tttcctcctg actggccata cagaaccatg agcacataga agaagtgtac ttggagaata
      181 gctgtggtcc tctgtggagt tgttgccaaa attccttttt cttctgccat tttacttcta
      241 tggttgttga ttatttgtct gaataaatct ggcagctgtt tgctatgttt aatagagcag
      301 aaaggctact ctgaataaag ctatttgaaa atttgtttat atgaagtatt tgtaaatcca
      361 tgaaggtctc ttggcatttc tgtatcgctt gctctgtctt cctgaattca ttctttgatg
      421 caggactttg caggctggca aatttaccac aggtatcagc tgtatcagaa tattcttggt
      481 aacagaggtc tcaattctac attttgcat
//
LOCUS       KCOD01003848             719 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 428224pyr ultra-conserved element
            locus uce-276, sequence.
ACCESSION   KCOD01003848
VERSION     KCOD01003848.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 719)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 719)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..719
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="428224pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>719
                     /note="ultra-conserved element locus uce-276"
BASE COUNT          231 a          128 c          147 g          213 t
ORIGIN      
        1 aataatccct gagatgctta ttttagtaaa tgaatcagtc acactgagcc aaggaaggga
       61 gccatctatt accgtgctat aaatgttaaa gaccctattt agagccttta tctctggaag
      121 aaacaaagcc atttttgcgg atatttgtac gacatcaata atggtacctc actaagttgt
      181 gagtagatgt tacaattgca gtttgcccaa ttctttttca ctggtcatca gggaaattca
      241 tctaaagcaa ccaaaaaaac atagatatgt ttgcatcata ttaataagaa gagaaagcaa
      301 ggtagctgcc aattggcagc agagtatgtt ttggtggttt gataaggata ctaaagagtt
      361 tatgatgtga cagatgtttc actacactat tgtgaaatga atagattatg agaagtaatt
      421 agatgtacat tggaatcaat gctgttatca tcgaggcctt cgggcgatgc aatagatgag
      481 agtcatggca gcaggtggtc caatggctcg gagacaggaa gacacaccgc aggagactga
      541 gtgacaggtt tcacagatcc agggggtgag agatctgagc tattgcctgc atttgtaatc
      601 tttactcatg tataaataat aacaactaca ctattgactt catatgctat gtcataccct
      661 cacacaatca cacatattct gcaacttttc ccctcagtta aagatattct tttattttc
//
LOCUS       KCOD01003849             818 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 428335pyr ultra-conserved element
            locus uce-5916, sequence.
ACCESSION   KCOD01003849
VERSION     KCOD01003849.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 818)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 818)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..818
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="428335pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>818
                     /note="ultra-conserved element locus uce-5916"
BASE COUNT          241 a          144 c          149 g          284 t
ORIGIN      
        1 tagagaagtc ccttatgatt taaataaagt ttgtcatatt ttacttctat tggcatgtgt
       61 attcttcaag gataaaatat ttgctaaatt tctctgcttt ctttcactcc tgcttatatg
      121 atgaagcatg atttgtggta tttaatgtaa tcagagtatc attaattttc tgctaaaatg
      181 tttctgcata tggccatgca aaataagtat ctaccatacc atcagttgct taaagaatca
      241 aaatgaggat tttttctaaa gaagatttct ctgaatcttt ccacccacag gctctgttga
      301 aggcagtaaa tagtccattt ttgttaatga agcttcactc atacagctgg gattgtttaa
      361 tattttacga gtgttacttt gttttgctct caacgatctc aggcagttaa ggatttatga
      421 atcgtgtttt tctcagccca tctgcggttt cctatcttcc ctggccttga gaatatgttt
      481 aaatttatta aagcgaagca aaggctcatt atttcaaagg agagccaaag tgacacagtg
      541 aattggttat taatggaaag gcactgccat agggcgattg aaatttaatg atatcctaca
      601 agaaaaaaat gagggtgtca ctttccaaaa agtcatgcta aatgccagcc tttttaaggt
      661 cctgccgcta attttatgcc tgcacacagt aatgttttca aaagcgttta ggaaacacgg
      721 accagtgact gtactgatta tccttttcac cttctcgcct gttccaaatg ggtttgtgca
      781 gtgagcgatt taatctctaa atatagggaa cgttaaaa
//
LOCUS       KCOD01003850             425 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 428444pyr ultra-conserved element
            locus uce-2625, sequence.
ACCESSION   KCOD01003850
VERSION     KCOD01003850.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 425)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 425)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..425
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="428444pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>425
                     /note="ultra-conserved element locus uce-2625"
BASE COUNT          159 a           72 c           55 g          139 t
ORIGIN      
        1 aaacacagca aaaattaatt acaattattc atgttcttga aaatgacagt acatgataag
       61 taagaagggt cactattgct catttctttt ttaagacaat ctttgtttac ctagttccca
      121 agtgttaaga gcctgtacgg tacatttgca taggataact aacatatacc acaccatttt
      181 cacgtctgca agtacacgtg agtaaccgta attacacgtg acaccaatta ctctattact
      241 ttgtattaaa ttataatgga aaattccact agagaattga agcctaattg catcttaatt
      301 tgcatatttt tgcatattaa ttacatctca gatgaataat aaatttcagc agatttttaa
      361 tttatgcata gacacaaaaa caagtggaga aataatttac aaaaaaatac cagcaactat
      421 tactt
//
LOCUS       KCOD01003851             680 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 428553pyr ultra-conserved element
            locus uce-700, sequence.
ACCESSION   KCOD01003851
VERSION     KCOD01003851.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 680)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 680)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..680
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="428553pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>680
                     /note="ultra-conserved element locus uce-700"
BASE COUNT          178 a          151 c          121 g          230 t
ORIGIN      
        1 tttacctaca caaaagcaga gcaagcaatt gttaatgcat gttctgaata gatttaacta
       61 tggctacatt tatttcaaac cctgtggcta aagcccatcc ccacctaatt ttttttcttt
      121 catcaatggt cagattagca agtcagcact gtcaataaat aaactagaga agttgtttat
      181 ttttatgtac tactgagaac agtgtcgtct tgtggccgtt ctcgtagact gtgttggttt
      241 aacaagcgtc caaccctttt gtcttgttgt tttttgtctt tcctgctccc tgtccccttg
      301 ttcccacagg ctgtgcgttt gtcacatttt ctacaagggc aatggcacag aatgcaatca
      361 aagccatgca ccagtctcag accatggagg tacagtactg tatcatttgc cctttctttg
      421 ttttctttgt gcaaatgatt gcgaatggta aagccatgct ctcctggatc agatcagaca
      481 catgacaatc acagatttaa attttttacc agttcactct agctgtcttt gtgaattttt
      541 ctcaatcacc tgaaagagca cagtaaggct gctgtgtggt atccaaacac agctctcaat
      601 cctgttttca gtggcattca gctgaaaata aaaatgttgt gaataccact cctcatttgt
      661 actctctctg atgagtaaat
//
LOCUS       KCOD01003852             802 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 428664pyr ultra-conserved element
            locus uce-6782, sequence.
ACCESSION   KCOD01003852
VERSION     KCOD01003852.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 802)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 802)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..802
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="428664pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>802
                     /note="ultra-conserved element locus uce-6782"
BASE COUNT          276 a          156 c          127 g          243 t
ORIGIN      
        1 tgtctcctat ttaactctgg gctgtaaaaa agggaaaatt aaaaaccatt atgagacctc
       61 catataatta atcttcagat ggcttgaagc tcaagcatgt aatgtcctca gtatactgtc
      121 tactataaca agtaacagga gggaaaaaaa gacaacatat caatacactt tatccaatgg
      181 aagaaattcc agttgtagca ttaaatataa atacaatagt gtgttggcat aatgtagtaa
      241 ggttcctgta ctattaaagg ctttgttcta aagcatatct gtgcacacaa tgagatgatg
      301 aacacagtgc atcacatagc taaatttaat atatgcaggg gtatgatgtt tgcaatgcat
      361 gcatttcagc aggtcccatt agtgcgcctt tcccctccag tgaaaacaga atgaaccaca
      421 gccccttctg gtttgcataa agcaaacaaa attagatttg ctttgctgaa ttgaaacccg
      481 cttgggattg tgagcctctc tcggggacaa attacttcaa acaatccctt tgtaccataa
      541 caaaatcaaa aaattcaggc caatcaacat ggctcaaaac ccttaacaca agaattaata
      601 atacaaccta gtctattttt attgcttctg agctacagat ccttgtttta atataattac
      661 acttatttgt ggtccacatg ttaaataagc ttgcatatgt taactaatgt gacataaaac
      721 aacttttgta atttcactat tgctaccagt tttgttcccc ctagagtaac atccctaaca
      781 taggaaactt taattgcatt aa
//
LOCUS       KCOD01003853             824 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 428774pyr ultra-conserved element
            locus uce-7912, sequence.
ACCESSION   KCOD01003853
VERSION     KCOD01003853.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 824)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 824)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..824
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="428774pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>824
                     /note="ultra-conserved element locus uce-7912"
BASE COUNT          250 a          156 c          154 g          264 t
ORIGIN      
        1 aaagagcttt taagggattc cagcactaaa tcctatatag atagcaagaa atgtttactt
       61 gaggaagaaa agctttgcat tttggtacca aaataaagag atttttcttt ctcaggcagc
      121 ttgcctttgg tgaattagca agtcaactgc tgtagttttc agaacttttc taattcctgt
      181 gccaaggtgc aactgggcat tacagtgcta catagcaggt tttataaaag ataataagta
      241 tggaaacagc aattcattgc tagtttttta cctctctaaa tacagctagt acccagagtt
      301 ttcaaggcaa agaatatgca tttctaaaat gtctcttccg tatttatgct gcggctacca
      361 catttgtata aacagaaaat tgctccattc atgctttatt agctcttctt ttgtaccaca
      421 gccttgaccc cagtcatcat aaattgagaa atagtgggga actaatggag acagatggga
      481 atatggcttg ccatttactc aaattggtaa agtaattaac ctcaaggtgc tggtttgcaa
      541 gaaaaattgt tggaatatct cagagcgctg gtaaacagac tcctgcttta accacttctg
      601 acaactgcat cataaactag acttattctg ttcaattgac ctgtcaacgt cttgagtcca
      661 aataaagatt tgtattacaa tgcacttgct gagaagggga gaacactact gctgtttctt
      721 ttcaaatggg ttgctgttct caccctgcta gataggagct ggaatgtcgt atattcatac
      781 ttcagccatt acattcctta gaaaacttcc attactgatt gtgt
//
LOCUS       KCOD01003854             700 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 428884pyr ultra-conserved element
            locus uce-6874, sequence.
ACCESSION   KCOD01003854
VERSION     KCOD01003854.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 700)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 700)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..700
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="428884pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>700
                     /note="ultra-conserved element locus uce-6874"
BASE COUNT          182 a          177 c          147 g          194 t
ORIGIN      
        1 aggaaaggac tgcattttag gctgtttgca ataggattca cctcggcaaa tatctgatat
       61 ttacttaatg tttttcattt acatctctca aagcagcaat tacacaattt ttgcaataca
      121 ttccataacc aaatattcac tcttctgaaa taccaaacaa gtctgcaccc acatgcagca
      181 cttcagtctg agatcactct actcccactg gtgaaatcct aaggttttgg aaaagaaaaa
      241 ccatctggtt tgccagcagt ggcacaacgt cagaagtaaa gtgcagagat tctgttttca
      301 tccccaagct ctttctgtcc tgctgctgct accttatgtt cctccgcatg tgagacggtt
      361 tctgagccct cttctttttg gtgtcctcag aggccaggct cttgtgctgg ttctgcaaga
      421 gttgctctgc ccgctcgctc tgagatgagg tagttgaagt cgagcgctgc cattctccat
      481 cctccgcgtg ctccgcatgg tcaccactga acacggcttc ctggggttgg tctgcaaaag
      541 aacatgacat gggaacagct gtgccaggtt ttccatgagc attcagcagg atttgagcca
      601 aatgggaacg ccctaccctc actcattcta cagtgaaggc tgtccccagt gaaagccaaa
      661 gaagtgtcct gacaagaaaa caagataaaa ttacttaggt
//
LOCUS       KCOD01003855             433 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 428990pyr ultra-conserved element
            locus uce-5372, sequence.
ACCESSION   KCOD01003855
VERSION     KCOD01003855.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 433)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 433)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..433
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="428990pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>433
                     /note="ultra-conserved element locus uce-5372"
BASE COUNT          147 a           54 c          119 g          113 t
ORIGIN      
        1 aaggagttgc ttctggggca tttcatcttc tctctgctgc tttgggttca ctgtacttgg
       61 ggaaacggta gaggagttct gagcatctca ttataaaagg acatagataa atctgaaagg
      121 atagagggaa gggtgacaaa aatgatgtat tgcttgtaga aaaggagact aagggtggat
      181 ataaacagtc tataaatatt tgagagctaa taatatggag gagggggagg gattatttac
      241 agtgcttgag acagcataac aaggagcaac ggcttgaaac taaaaaaggc aaaattaaat
      301 tagacactag acactctttt cctaactaga agtgcaatta gcagtggagt gacctgcata
      361 aggacaaggg ggtaagtgaa gcataatcgg gagaggtgtt taagagtgtg ttagattatg
      421 atctcaagtg att
//
LOCUS       KCOD01003856             703 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 429099pyr ultra-conserved element
            locus uce-84, sequence.
ACCESSION   KCOD01003856
VERSION     KCOD01003856.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 703)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 703)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..703
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="429099pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>703
                     /note="ultra-conserved element locus uce-84"
BASE COUNT          208 a          119 c          119 g          257 t
ORIGIN      
        1 ttttttggaa cccttttagt ttgatgtttc tctttaagaa gtttgtatac tttcatattc
       61 cagaaataat tgaagctttt tcgaaagcat tttgcctgat tcagctaaat tgcaagcagt
      121 gaaaatgctg taatggaagg aaagcagata atgttgatct gtgtgtatta acatgattgt
      181 cctttttgtt tttgtttttc aggagagaaa tagaaacaaa caataactat atggagatgt
      241 cctgctagaa tacaacacta atgatgtaga ctctggaaat gcctaatatg tctaagaaga
      301 cgttattaaa gcttttttct gcttaaggtg acatctttga acactttaac acgaaattga
      361 ctcttcttgt aatggttctc atcagtgcat ctgcccttat actctctcac caaacacact
      421 tgagaactgt accttcgtca agcactttct gtcctgaagc ttttaccagt atctgctgtc
      481 ttttgtattt atgcatccta gctaaggcac aggagaccga acgaatgcaa ggattcatta
      541 actctttgaa tttgttaaat actaacattt aaccattaga agtggttcaa tgatgtgaga
      601 ttcacattgc ttcaacttaa ttttctttgt tgtagttttt ttaattgtca gtttttagct
      661 attcaacaga ttaaaagcaa atcatgccat atttagtcct gga
//
LOCUS       KCOD01003857             716 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 429207pyr ultra-conserved element
            locus uce-7219, sequence.
ACCESSION   KCOD01003857
VERSION     KCOD01003857.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 716)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="429207pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>716
                     /note="ultra-conserved element locus uce-7219"
BASE COUNT          209 a          142 c          132 g          233 t
ORIGIN      
        1 ctccctgccc cggagcagag ggaagttaat tcccaaccaa tcagttcaat ccaacctgag
       61 tttcaccgga gtgcaaacaa cagccctaac ttttttaatt tcatcctcta gtactcccaa
      121 gtaaataaaa aaaaagtaaa gttttcctac aaatagaaac tgtcacttac tgggatgtga
      181 tcttttcagc tcatgcatcc taaatgcatg cagagatatt atatgcactt tctatttagc
      241 aatttaatta tatctttgca gtcagagagt ggcaatggtt tgcagtaata atcaggtgaa
      301 agcattctca cattaatatg ctggaatccg atgtgttaat ttgatgcaac tttgcgttga
      361 caatatgtga ttaatttgtt cccaggctcg ctctgctccc ggcgctgaca gctccaaatg
      421 ctgggtttct ttatccatat cactgtttga cacgccttag cccactgctt tgctaggacc
      481 actgttaatt tgtaatgaac tggcttttca gggggctcct tcatttttaa ttctgtcagt
      541 gtcacctcct tgaagaaaat tataagtttc cttaggtgtg attactgcca agtgctgctg
      601 ataagaggtt tgagaaaaca gggttttata aagaagtcag tatttaatct gctgaaacag
      661 atttattgcc tgtagacaga taaatataat agaaagttct ttcatttaaa agtaat
//
LOCUS       KCOD01003858             673 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 429317pyr ultra-conserved element
            locus uce-6579, sequence.
ACCESSION   KCOD01003858
VERSION     KCOD01003858.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 673)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 673)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..673
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="429317pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>673
                     /note="ultra-conserved element locus uce-6579"
BASE COUNT          203 a          134 c          136 g          200 t
ORIGIN      
        1 tttttcccca ccataaaaag ttcacaagtt aggaggtaat tgcattagca cgctgagaaa
       61 agagaagaga atgcaagaaa tcctgattgg cgtttctctg tttaaaagga attattttcc
      121 aatacctgag catgcccaga ggagctagtc tccgagcagc tgtgaaacag aaccttttta
      181 cttcagggtt agtgcaggga gctcattagc acagcctcaa ccctcagcta aacagccttg
      241 tttgcatatt gaagcaatag aatgtgaagg tgttaaaaag gaagaattgc agccgctact
      301 cctgactgac atgtctatct gggctcttgt gtttacaaga gaataacgaa gctgccccaa
      361 agcccctact gggcctgatt attatgcaga ggcttcttag attatgtata attgatatcc
      421 attttccctc cagctaacca atggcagctc tcaggagtaa tgctcactct cctgcatctt
      481 accaagcaag caaacactgg aaattgctat attttgctag gcttaataat ttttaaagac
      541 caaaaattga catttacatt tttcagaagc atagattact gcactgttgg tagggttttc
      601 ctgctaatag caatcaaaca gtggagatac tgtatttaag ggtgattgga gctatgttca
      661 tttttatata ttt
//
LOCUS       KCOD01003859             730 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 429430pyr ultra-conserved element
            locus uce-5098, sequence.
ACCESSION   KCOD01003859
VERSION     KCOD01003859.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 730)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 730)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..730
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="429430pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>730
                     /note="ultra-conserved element locus uce-5098"
BASE COUNT          201 a          166 c          159 g          204 t
ORIGIN      
        1 atgcacctga cttcggtaaa aacttcagca agctcctctg ctgcctctgt tgatagtgca
       61 gtttggtctg gacctcattg gattaaaggt cctaggaagt caccccctta ttttaaggga
      121 aacgctactt gtgcgagcag agttagctct atttataccc tgcctctgtt aacaagtcag
      181 aaaaagtaaa cttgatttct ttgacaggca cacgcttcct atgtcctggt ggcagtcaga
      241 cagatttgtt gcaagaaaaa aaagctggaa agagttcaaa aggctggaac tggcatggtg
      301 ggacccctgc atgtttctga atgcagggag gccttcttaa cccctttaga cctaaagtac
      361 ttccctatgc taagaatggc atttacttct gaaaggggac ttgtctaagt aacacccgca
      421 gtcaggggat ttccccacgg caaggggcta cacaatcact tgctaaaagg aacaaataat
      481 aggattgaag caattaaagc cagttttaac aaaggaagta taacttattt aaatttagga
      541 tcaacaaagc agatgtcttc ataacttctc tcagggctcc tccgggtttt tccttctctt
      601 tggtggggag atttccatga tgctgggttt aatgctgccc tccagtccca ccaggaagat
      661 gttaaaagtg tccctgaatt cctccacatt tcctgacagc cagatcccat tgtacagtgc
      721 attgctgatc
//
LOCUS       KCOD01003860             390 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 429540pyr ultra-conserved element
            locus uce-2848, sequence.
ACCESSION   KCOD01003860
VERSION     KCOD01003860.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 390)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 390)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..390
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="429540pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>390
                     /note="ultra-conserved element locus uce-2848"
BASE COUNT          115 a           87 c           67 g          121 t
ORIGIN      
        1 cagcaactaa attaaaaaat ggtatctgga ataaatttaa agtccaccaa taaagagttt
       61 tctaatgaaa ataaagacaa attagtggaa aattggaacc gagctactct aattttttct
      121 tttctgtttt caaatgtatt ttccagagtg gatcactaaa ggagccagag ccaaacaaaa
      181 tcccacctca gcgaccacca cctcaaggtt gtttacagta cattctcgac tgtaatggcg
      241 ttgcagtagg accaaaacaa gtccaggcta cttaatgcaa ccatcccaga ttgtttcagt
      301 gctgacctgg actgtgtttt ttctatcaac tctcccgtct ggttgtttcc ttgttcctgt
      361 ctgtgcgtgt aatttccaac cttcctctgt
//
LOCUS       KCOD01003861             707 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 429648pyr ultra-conserved element
            locus uce-3055, sequence.
ACCESSION   KCOD01003861
VERSION     KCOD01003861.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 707)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 707)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="429648pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>707
                     /note="ultra-conserved element locus uce-3055"
BASE COUNT          247 a          108 c          128 g          224 t
ORIGIN      
        1 aggattataa tctaaaacca gatattttct taataaattt acagaattag aactggacac
       61 actctctgtt ttcatgactg taaaatgatt ggattcttgt ctcatcaaat ttacattgta
      121 gaatctgaat atagtatgat tagacattat tttaacaact acattacaat acaatttaaa
      181 ataaaatggc cctttatatc gcactaatat cagtgtttta aataacaaag gggacaaata
      241 aaggaaagga ttagcattta gtttcaatca gtataagcaa tgctgtacca gttggtgtct
      301 caaagattca gaattttatt aatattccag agatgcattt gtgttgcctc tgggtacact
      361 gaaaagccac ttaaactgca cttaaagcag cactacagga tcaaattgat gtgcatcaac
      421 catttacaat aaaacttgat tattataaag gcatacatat ttgcataatt acatgtttga
      481 ttttttgata atgcagaata cactacaaaa tgttgcttca tgtagaaagg caccgtcaaa
      541 aagcaccatc tgctgtagtg tttaatgcac tgcaatgttt gaaaaattct gaaggtagat
      601 tggtgcaaat caaaggagaa agcaaaggag ttttgctaga acaagggggg atggaggagg
      661 ggacacagta cgctgtggac cttttgtttg ttcctctctg gctattt
//
LOCUS       KCOD01003862             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 429759pyr ultra-conserved element
            locus uce-4535, sequence.
ACCESSION   KCOD01003862
VERSION     KCOD01003862.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="429759pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-4535"
BASE COUNT          197 a          142 c          139 g          224 t
ORIGIN      
        1 tataaaatta ttatggtatt gatggagctg gaggttgctc agagcagcct cgagaggcct
       61 ggagatcccc tggaaaagca gcaaagtaag ccacatattg taaagtaaca agaagaattt
      121 ttattattgc ttttgtattt ttcttaccat tttgatcaga tgtacattgt ttataacccc
      181 tagtttactg gccccaaata tcattacaac gtctgcacga tgatctatgt ttggttgtta
      241 cccttttaat ggataaaaaa agatttaagt acttcattct gttgcatttt gacagctgtt
      301 agccatcatt tttccattca cctgcattta gcaatcccat aaagggaggc aatcttagaa
      361 ctaacaagag ctgggcactg caaggtgata attctgtatc actttggcct ataaatacct
      421 gacaggcttt gggctgagtc agcagtctgt aacaaagtgg cagccgtgcc cttttatctg
      481 tgtgagtgtt tcacagcaat tggactatca gcccctgcag tgaaaatcca tagtatcgat
      541 caaattcttt tgtaggaaat ccctgatgac aaattttatc tgcaccactt tttgattgct
      601 ggtttgatgt aagcgatctc caagggcaga gttaagctcc tggccgttcc acattatcaa
      661 gcagcagctt tatttactga aactacactt gtggtcacca ac
//
LOCUS       KCOD01003863             363 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 429867pyr ultra-conserved element
            locus uce-1334, sequence.
ACCESSION   KCOD01003863
VERSION     KCOD01003863.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 363)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 363)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..363
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="429867pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>363
                     /note="ultra-conserved element locus uce-1334"
BASE COUNT          137 a           68 c           53 g          105 t
ORIGIN      
        1 atgtatatta atacagaaat atattgtgaa actgtcctta aacaaacaaa tgagccactt
       61 taaaatatta ccgctataaa tgaccatgac agtagcacag cacatataat aaaaaataac
      121 tactgaagag aagctgctga attactatag taataaacca gatgtgatta ttatcattta
      181 acacagtcat tgaataccat gaatccctga agccattaaa atatttatga ttaaacattt
      241 gctattcctt agaacagaac atatagtcgg gtactaaggt attattttgg ctaatacatg
      301 ctcgtgccat gataaaggtc agccagcttc ctggaaagag cacctaacag ctctcctcct
      361 tct
//
LOCUS       KCOD01003864             573 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 429977pyr ultra-conserved element
            locus uce-6724, sequence.
ACCESSION   KCOD01003864
VERSION     KCOD01003864.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 573)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 573)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..573
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="429977pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>573
                     /note="ultra-conserved element locus uce-6724"
BASE COUNT          199 a           76 c           82 g          216 t
ORIGIN      
        1 acatgacaaa aataaaaaaa gtggatccaa ttatttaaaa gtttcttgat gtatacaaaa
       61 ttctaaacta ttaataaata tatctgataa ataattatga tcgtctccat atttctttgt
      121 ttaattctca gttttcttgc aagatcttct tgaagtttgg ttgtaatgga tcattacgtc
      181 cataatgtgc tcaatgttgg agtgaatttt gaacagtttt tcggctgcat actgttttct
      241 tccagataat ttactggatt aaaattagca gtgtgaaaag ctgtagagaa atctaaatgc
      301 ctgccaaatc aaagaaataa tcacattttt atgaatattt aatatcatag tcatggcaaa
      361 taaggcaagt aattagtact taccataaat ttgcaaagta ttattttatg taaatgttac
      421 attctactag tttgatatga attattcatt gtattaccag acactgacac aaaccagcaa
      481 acactaaaat ctatgtgtta ttagtttact tacctttaat gatattgttt agagggtatt
      541 tttatgagat tactattttt tcccaaatgg gat
//
LOCUS       KCOD01003865             869 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 430085pyr ultra-conserved element
            locus uce-2116, sequence.
ACCESSION   KCOD01003865
VERSION     KCOD01003865.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 869)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 869)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..869
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="430085pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>869
                     /note="ultra-conserved element locus uce-2116"
BASE COUNT          229 a          174 c          195 g          271 t
ORIGIN      
        1 tccagcaggg aaacatctca ctgcatgccg cacaaaatcc catcggataa cacaggaggc
       61 ctttttaggt gctgctggag caccagtctg accagtaaca cacagttcac tgaatcccta
      121 attccagttg ggaagttatc tgctgtctct agcagtgaaa tcctgactga taagcgaaga
      181 ggctcatctg ctggtagcag agcctccagt ttatcagtgt ctaaccagct cataaatcag
      241 actggtgtct gtttttattt tgttttatca aaatttattt ctatcattgt aacagttaat
      301 actttaataa gagaacttag ctgggaacat taggaagtta gttagagaca ttttgcaggc
      361 gctttttccc ttgtcagtga caaggtaagg taatcctata cacaggctgc tattgtgaga
      421 tgagaaactg gcctccttca ctgccagaga ccagatgcac ctctctctat cctaatctgt
      481 aaacgactta aaggagcctt atctcggggc tcttctgctt catttcatgc ttgatttact
      541 ttaatttgtc tgatagggca caaggatttg gagacggccc atctttctgc agaaaatgtt
      601 cagatttttt tttccttggc attgttgtgt tgggggtttt gacttttttt atgtggagga
      661 aatcttgctc cagtgcagca agctgcttga gtgtgtttag atttaagcta ccccagcaga
      721 aaagagtttg tgaagtggta tgattgtgtg atgggccaca tttacattga aatcacatta
      781 tacgatatat ctggactcct gaagggagca gtgcagtgga gcgcttgtgc ccacaagata
      841 ctttgaaagg actatatata gtggcaaca
//
LOCUS       KCOD01003866             719 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 430195pyr ultra-conserved element
            locus uce-4908, sequence.
ACCESSION   KCOD01003866
VERSION     KCOD01003866.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 719)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 719)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..719
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="430195pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>719
                     /note="ultra-conserved element locus uce-4908"
BASE COUNT          215 a          124 c          141 g          239 t
ORIGIN      
        1 tttggagtcc ttcagctgtc attgttttcc agcacagtga aacttagata ataaactacc
       61 atgtgcaaga attataaact agtgctgcaa gatttatgcc attgtgtgct tttaaaatcc
      121 tatgctattt ttgctcatgt tcttcagctg ggatggaagt gtacctataa cagtatgact
      181 aattatcttt acatgcattt atcactaaat aaacttcaca caagacagca agattgttta
      241 cttaagcagt ataatactgg gaatggaaga tagcactaga acataggatt acattgccag
      301 aatggcacta tttattaagc tatgataacg ctaatgttcc tttttgatgt atagcatgtg
      361 tgacttcagc tgaacttgta gagagcctta aggatgtttc attgaacatt tagtatggca
      421 gcaagccaga atacatttag cctaaaccca gatgacaggt tggtaatgag gtagtgattg
      481 atgaccactg cttccatatg aaaacctgct tgatatgctg ggggggaaat gcattgctag
      541 ctctttttat ttcattccct ctgtattagt tattcttact atagaggagt agcattggct
      601 gctggttatt caatcctggt ttcacttttg gatgagaatt gagtactcag ctgagactgt
      661 agaagcacag ccccaaatcc taatttcaat ggatttttat tgtcaaaaat aactgcaat
//
LOCUS       KCOD01003867             448 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 430305pyr ultra-conserved element
            locus uce-3079, sequence.
ACCESSION   KCOD01003867
VERSION     KCOD01003867.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 448)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 448)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..448
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="430305pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>448
                     /note="ultra-conserved element locus uce-3079"
BASE COUNT          126 a           88 c           99 g          135 t
ORIGIN      
        1 tgcggctgct gctctccaat tcggaaacat tttcaaatct atgagccttg aatggacaaa
       61 tactcgctat taatacggga catggacgag tggcaaaaaa cctgaatgga aactgtgcgg
      121 tagctttagg agaaactaac gatgtgcttc agctcttgcc attacaggga aggaaagagg
      181 gggaaacccc ttctgattaa taactagcag ggtaatgttg agggcttttt ctgcccgatt
      241 gcctttttga attagagccg atttcttcac acttcaatag ggcctgtctc ttttaaaatg
      301 actgacagat ttgtttctcc ttttttctct ccctgagact taatgatgta aattttctaa
      361 ttagttaaat cacgttgctt aaaggactta atgtttaccg ggcaaggaat gataggcgca
      421 ttcggatctc tcgaaataac cggcgaaa
//
LOCUS       KCOD01003868             628 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 430414pyr ultra-conserved element
            locus uce-2283, sequence.
ACCESSION   KCOD01003868
VERSION     KCOD01003868.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 628)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 628)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..628
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="430414pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>628
                     /note="ultra-conserved element locus uce-2283"
BASE COUNT          200 a          112 c          116 g          200 t
ORIGIN      
        1 agcagctcct actgcttcgg agggatgaga aaataaaatc cagagaagtc ttctattttg
       61 gtatacttaa cacatacagt tatctacgtg tcctatatat catttaacaa attgctttgc
      121 aattcttaca gggcgtggta taatgactga tttaaaatca ctgcattgct taaactgcat
      181 tgttcttcat caagttgagt catttttatg tgaagtgtca agctctctaa caaataactg
      241 ctgccagaca aatcaagttc ctcatcttaa agctacggct aaatagttta tagctttaat
      301 ctgctcactg aggtgtgcag tctatgacag taattataaa tgcaaggaga aattatagct
      361 gaatgcttta actgcattag gagccatttg atgaacaatc atgattgcct gctcattttc
      421 aacaatagag ggcaagttag tgtcagtgca ttagagaatt ttcagttctg ctctgctctt
      481 tcttccattt accacagaat gtcagttgtc tcctatgaag taaaaaaagc gccatagaag
      541 ctttaaactt gatggttaaa aaaagacaaa ggaggaaaca gagagaaaaa ctgtttatcg
      601 ttatgactca ttttgttttg cagcagcc
//
LOCUS       KCOD01003869             523 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 430517pyr ultra-conserved element
            locus uce-5174, sequence.
ACCESSION   KCOD01003869
VERSION     KCOD01003869.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 523)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 523)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="430517pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>523
                     /note="ultra-conserved element locus uce-5174"
BASE COUNT          161 a          116 c          113 g          133 t
ORIGIN      
        1 acttgagtgg tgtacacagg aacaagagct ggggggcact gcaaagaaca ggagaaagtt
       61 tgtatgcgtt gcagatcaaa atcaaaacac tgaatgtgca aagggcacaa gccccagtaa
      121 gaccaataag gtctctggtg gttttcaaaa cagggaaaga gtgctacaca gatgggcttg
      181 gaagtagagt tgtatgagat cttcctccct tccaggtgca agtgggaagt acacctcagg
      241 accaaagaat tgtgggatac atttcctgca ctcacttgca agctattgca ggtactgtcc
      301 taagattcat atctactatt tccaggcctc tgtgcacaaa gagtgttgcc cctcctgtgt
      361 ttctgacagt caagcatgtg tagcaaaccc aacccttcac atcttccttt gctccctcta
      421 aaccaaatac tggtatttta gcattgtcac tcagcaacat ttaataaccc cagtatcagc
      481 atataaaaaa aatttctttg tgcggagata atcagaagat aca
//
LOCUS       KCOD01003870             616 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 430624pyr ultra-conserved element
            locus uce-3282, sequence.
ACCESSION   KCOD01003870
VERSION     KCOD01003870.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 616)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 616)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..616
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="430624pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>616
                     /note="ultra-conserved element locus uce-3282"
BASE COUNT          200 a          120 c          122 g          174 t
ORIGIN      
        1 aaagaacaaa tgtatgcctg taggccaaaa tgcagaagct tgggactctc cctccaactt
       61 acatgaaatt tttacaatga attgtaatag aaggttcaga taacaaaatt acagtggtgt
      121 agccaagaaa aatacccatg gggctttctg cttcccttgt gcccagactg aactatcaga
      181 tcagccttct ggactcaaat gcaacactgt caataggaat acatcatctt ttttgtggta
      241 tagaagagct gtcggttgca attcccatta ttccaaggcc aggattttcc attagtgtag
      301 ccacctgctg ggtttctcta ctcaggttta atggagtctg aatttgaatt tatcaccatc
      361 tgtgggaaga caggaaatga gaggagcatc actaattcct ttcttcattt actaagcata
      421 atctttataa ggagataggc agaagcagca gtgatcaggg agacagagag aatttaactc
      481 atattgacat cagagttcca gaccaagaaa aatgcagtct gtttgtcaga caattccaac
      541 aacaatttcc tatgaccaaa acatgcagat atgggatatt atttcattcc aaggaggtct
      601 ctgaagattc aataat
//
LOCUS       KCOD01003871             925 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 430736pyr ultra-conserved element
            locus uce-338, sequence.
ACCESSION   KCOD01003871
VERSION     KCOD01003871.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 925)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 925)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..925
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="430736pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>925
                     /note="ultra-conserved element locus uce-338"
BASE COUNT          287 a          152 c          174 g          312 t
ORIGIN      
        1 aaataataat attgaagcat gacttttctt ctcgcagtta gttcactggg aatggtatct
       61 aatgaagagt tgtctaaagg cttgcttgtt tggaactaat taaagacaga tatcctaaat
      121 agaaaaagga tcatgggaat tacattaggt gtctggagac ttgttattct tttggtactc
      181 tgagtagatt gtggaagttg ttagggattc aagaaataag gcaagctaat aaaaagttct
      241 atttttctgg ttattggcca actattgtat ttttgtttgc aataagattt gtgccaacag
      301 gctaggggct tgaataaaac atttaaacat ttgtgcatta acacattatg gtgaaaagag
      361 agtcttgtgc tttcactcag tgcatttcag ccttcaatta atgtgaaagc actacaatgc
      421 ctatgcaact tctcttgcct agtggtgcac catttatcat tgcagtttta cattgacctt
      481 gacacccact tcattagaat aaagattgtc taccatttag gttacattgt tcctctgcac
      541 agagacccca tgcaaatttc tgttcagata gaagagctgt gagcctgtca gaggtcatct
      601 gcattaaatg attgcagcta ttttccaact gcttcttttc attctactca attcaggcta
      661 ggaggatcaa tcaagccctc tgcctgaaac agtgggactg ctgggaatat aactgttttt
      721 ggtagtagtg gatatgccct aaacagtatt aaatatttaa tataaattca ttaaagggca
      781 cacaaagtct tcaaaaagat attacatata tgggatcact tctttaaaaa agacagaaca
      841 atggatacca actgcataat tttttaatgc aggtaaaatt cagttcatga agttgcttaa
      901 tatgtctttc aatgtgttta tttct
//
LOCUS       KCOD01003872             519 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 430845pyr ultra-conserved element
            locus uce-2594, sequence.
ACCESSION   KCOD01003872
VERSION     KCOD01003872.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 519)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 519)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="430845pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>519
                     /note="ultra-conserved element locus uce-2594"
BASE COUNT          137 a          142 c           78 g          162 t
ORIGIN      
        1 ttcaccctct tctcttttaa attcatgctc tcactcactc aaaacacaca ccttaacaac
       61 tttcctatgc atggagattt cccactcgcc ccaccctacc cctcctgtta ccctaatcca
      121 agctcttgct ggcagctgct atcccggcgt tctcacttcc ttgtccaaag agttcataat
      181 tcaggaccat gagttactta ccacttattt ccaactctgc ccagtgtgat ttctttccat
      241 tggctgcttc ctctgaggac ataattgtgt acatcctccg tggatcaggt ggatcgtact
      301 tttccttggg cattcctatt gacaccaaaa ggcaagtaat taattgagat atagaattct
      361 ttagaaggta atccccattt atttcatatt acttatatac caatatcgct ggatgggaaa
      421 cactgctata aaaagagatt cctgatgcta aaatgacaga caacagtcta gtgcaataat
      481 ttaccagaat ctgttgtgcc ccaccacctt ccatggcta
//
LOCUS       KCOD01003873             788 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 430955pyr ultra-conserved element
            locus uce-1158, sequence.
ACCESSION   KCOD01003873
VERSION     KCOD01003873.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 788)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 788)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..788
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="430955pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>788
                     /note="ultra-conserved element locus uce-1158"
BASE COUNT          225 a          166 c          142 g          255 t
ORIGIN      
        1 tttattcagg aaacacagaa ttttaaatgc ccactctctc tacctgtagt ttaaaacaca
       61 atagcatctt aattattttc tgaaccattc tgaaaagtac agcttttgta actttttgac
      121 atttcaggtt aaaacgttgc caccagcttg cactatgagc agcctgtaat aacagttaaa
      181 aaagctttct gaactatttg acaagatttc ttagtgctga ggccatatgc tgtagccttt
      241 aagctatttc ttcctatcag tttcattatc acctgcctct gagtctccaa tatcatcagt
      301 aagcacatgc agaatcataa ttatgccatg tacaagttct ttgataacat gtacagtttt
      361 cttcttaatt ctttatcaaa tgcattgatc gtggcatgtg tgcattgatc caggtccacc
      421 atctggctgt gtgtgataag cacagtggca tctttgcatt tccactgtca ttcattgcgc
      481 tacaatttgg ctgcagggga gtagtggctg ggattagccc tgttctgcta cttacttgca
      541 ttttaagttg acacctctac agcggctcag accacattac aaactgaaac acatacgcac
      601 gacttagtga tgtgacactc ctcaataagc ttactccact agctactcaa caatctgtaa
      661 ttggatttgt aggaataaca gcaaaagatt tcctaagaat tgctggggac agaaggtgaa
      721 gttttctcat tattggcaaa aggctaggta tagatcttag gcgattggta ttttcaaaaa
      781 cctgccag
//
LOCUS       KCOD01003874             722 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 431065pyr ultra-conserved element
            locus uce-2277, sequence.
ACCESSION   KCOD01003874
VERSION     KCOD01003874.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 722)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 722)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..722
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="431065pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>722
                     /note="ultra-conserved element locus uce-2277"
BASE COUNT          207 a          105 c          147 g          263 t
ORIGIN      
        1 tgtgatgcaa tactttggta ttattaataa gtatttattc tttgtttaag attctgggtc
       61 tctgctaaag gctgaagaaa gtacctgtga aagctggtag agggaattga aagaaatggg
      121 tcctgtcaat tattgagggg tgaaatcaaa tacctgagca cagtggcaaa gcaaataaaa
      181 atggttgctg gaattttaaa ctactttgtc taaattctcc atctatctac taagattaat
      241 tcagttgttg tgtatgtggt ctaagttgtt attaagagat ggatttctta ctgtggcacg
      301 tattatacct tgcagatact tggttacttt gactatgctt tcacagccat ctttactgtt
      361 gaaatcctgt taaaggtaat gcattgttaa ttgatccttg ttagctcaaa agcagcttta
      421 gcaataatgt ttgtaacttt ttgtttacct tccagatcct agggtatgca gattatgtct
      481 tcactagtat gtttacattt gagatcattt tgaaggtaac aggtttttaa aggaagcttg
      541 tttaaaagga ttttccttgt gtgtcacctg ccaagaaaag gcacttgaag tgttcttcgc
      601 cttttctcta agcgatcaaa gctaaactaa actagaggat atttgacagt tcctcatagt
      661 tttgattggt tagggtgcat gaagaagctg gttttttatc attacatcag tttaagaatt
      721 ca
//
LOCUS       KCOD01003875             818 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 431178pyr ultra-conserved element
            locus uce-5755, sequence.
ACCESSION   KCOD01003875
VERSION     KCOD01003875.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 818)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 818)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..818
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="431178pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>818
                     /note="ultra-conserved element locus uce-5755"
BASE COUNT          257 a          140 c          172 g          249 t
ORIGIN      
        1 ttttctaatc cataaaaaag tgagaggttg agttgctcag aagataaacc ataccactat
       61 tttagcagac aggaggatgc aaaacagact gccagagagc tcaagaggct ttatttcctg
      121 acgctcattt ttcatcacca atcctgaaca gaccccaaaa ctcagactaa ttaaagacaa
      181 ataattaagc acattcagat tgtgaaagtt ggcagactcc cactgtattg tgagaccacc
      241 ttggcattta aatggttagg gactatatcc cacaacatca tgctcatctc attgtggtag
      301 agagctcttg agaatgttat tagctgggtg ttcgccttgc cgtttttcca catgaggcag
      361 atgggtaatt acgaagctaa tagtctgatt gagagaaatc agatgcagtg gtttgcccaa
      421 ttagatgata cattagcttc cttctttgta agcagctaat gtgtgaagca aagtggtatt
      481 tttgagggtc agaatcctta aacaagtgcc gagttgcaga ttattgtgtc tctctttttt
      541 tttctaatgg aggaaaagtg ctaagtcttc attactaaaa gcatagaaaa tgcaaatcag
      601 gttctgaaac aaaagagtga agggacaggc gagaatattt ggtgtccaat gtgtcaacct
      661 acaacatcaa ttacattgaa atgcaatgca tgggagccta atcaaggata gtataattgt
      721 aataattgca tgcttttgtt ggagagctgc tgccattgtt attgtcaacc atttgttttt
      781 ctctattgtt taaggggaga gtatttaaaa tatatata
//
LOCUS       KCOD01003876             452 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 431287pyr ultra-conserved element
            locus uce-5254, sequence.
ACCESSION   KCOD01003876
VERSION     KCOD01003876.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 452)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 452)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..452
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="431287pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>452
                     /note="ultra-conserved element locus uce-5254"
BASE COUNT          110 a           95 c          106 g          141 t
ORIGIN      
        1 ctctggagct cttttctgga gccagcaacg gggatgcaac cagcaggctg ggacaagggg
       61 tgcccagtct cccaccttcc tggacctgga gagggcagca gagaaaagca gagcaccctt
      121 ggctgcaagc gcctggatgg agcaggagca gctgcgttgc agtatccaaa cacacttctc
      181 tgtgaggagg gtaatttaga gcaattacac cgattattat tgcttttcta attagtgctt
      241 ttcctacaga attagctgag tgtttattag gagctgcttg ttgccaatag cttaactgct
      301 tcagtaccag tttttatcaa acattagagt ggcttctctg tgtgtaactg gttttgttat
      361 ctggtttcac ataaaagccc caattaaata ttcattttgc tttgttacat atggcattaa
      421 attttcatga gctgtatgtt ctccttgaat tt
//
LOCUS       KCOD01003877             504 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 431394pyr ultra-conserved element
            locus uce-5219, sequence.
ACCESSION   KCOD01003877
VERSION     KCOD01003877.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 504)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 504)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..504
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="431394pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>504
                     /note="ultra-conserved element locus uce-5219"
BASE COUNT          132 a          100 c           89 g          183 t
ORIGIN      
        1 ctccacacta gtccacctct cttctggaag agtgacaatg gaggactcag taaattactc
       61 ttccattctt tcaaaacatt tgctaaagtt ctatgtgaaa ttatgatact gtattaagtt
      121 ttttagtgtt tctaaactct ataaaaatgt atctctgtta cagacatggc aaatatgtat
      181 actctacttc gtgctgtgtc aagtggttta cctcatatga ttcaggaact acaaaaccat
      241 atctatgatg agggccttag agcaaccagc aatctttctc aggaaaacgt gagtttcctc
      301 aggcagctga aatgatttga ttaacgtgtt tgcccttttc ctgttagtct atcctataaa
      361 attggttctc atcagcatgg tttatctgtc ctgagagttg attgttgtta tccagaaact
      421 actgcagcta gatatttctc ttgttgtttg cttaatactg tcttctgttc cgtgtacgta
      481 ctgaatttct ccagtggcat ttgc
//
LOCUS       KCOD01003878             700 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 431505pyr ultra-conserved element
            locus uce-7807, sequence.
ACCESSION   KCOD01003878
VERSION     KCOD01003878.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 700)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 700)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..700
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="431505pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>700
                     /note="ultra-conserved element locus uce-7807"
BASE COUNT          246 a          146 c          144 g          164 t
ORIGIN      
        1 gtgatattaa ataactataa aaccagaaag ccaaaataac taaatcacct ggcagccaat
       61 ttctgagagt taaaccacaa acccggaaaa tggtggagtg tgttgaaata atgtaaagga
      121 aacccataaa ttcaaacttt atgttctgta aagaacaaat atgaaaaagg catcaaaata
      181 atgaaagatt gtttatgtat tctggcatga aatgggaatg tgttatgaga gagagcgcaa
      241 tggcagagac agatcgacag agctgacagt gtggtattca tcctgcatgg tacagcagac
      301 gtcctgctag tggcagtcga cagcgcaata aatcaagggc tctcgatgct gtacctacag
      361 cttattacat ccaagatgac aaataaataa taatccctgt cacagcggcc ctttgctcaa
      421 ggattgagcc tgaaaccttt tgctcatcac tcctggtctt aagtgaaaat actagaacaa
      481 gggaattgaa ggccacggtt tactgagctc atgctggcca caggaactaa aaccaagcag
      541 gaaaggtcaa gtagaaagaa aggataaata tttaaatatc ccagcaaaag gatggcaaca
      601 tttcacagct gtgaaactgc aagagacccc aagcctctca agtcaagttc cagaccttcc
      661 agttacacac tccccctgtg tttgtttgcc ccctccatta
//
LOCUS       KCOD01003879             410 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 431611pyr ultra-conserved element
            locus uce-7969, sequence.
ACCESSION   KCOD01003879
VERSION     KCOD01003879.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 410)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 410)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..410
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="431611pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>410
                     /note="ultra-conserved element locus uce-7969"
BASE COUNT          104 a          102 c          100 g          104 t
ORIGIN      
        1 agagctgcag ctgccacggg atgtacaggg agattcaatg tgaaaagtgg aagataatgt
       61 gctcacacac taatgggcac tgaactagac acaggctcat ttttcacatc atgtcatctc
      121 taaggtttga ataaaaagta atggcgagaa tgagcctgga tctatctcag acattatcat
      181 ttgcctcctc agttttattt gtgttgactt gtacagtctc aggagctgac agtgtgcggg
      241 cccccggatc agtgtgagtg ataatacaca gcacattaca ctgctggtga cagctcctgt
      301 tccccgcgct ggcatctgag cgccgcgcat ctccctccgt cagctcaaat gctgccagct
      361 gacagcagac aggagctcac cgaggggaca tcctgtctgt tatcatttca
//
LOCUS       KCOD01003880             420 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 431711pyr ultra-conserved element
            locus uce-932, sequence.
ACCESSION   KCOD01003880
VERSION     KCOD01003880.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 420)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 420)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..420
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="431711pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>420
                     /note="ultra-conserved element locus uce-932"
BASE COUNT          128 a           72 c           83 g          137 t
ORIGIN      
        1 ggtcataagg aatgatgcta ttaatcctct tgggcaatct ccaggtctga ttattaggga
       61 aataaatttg catgctgcat atgagctagg tgaatcaccg agagcacaaa ttatatttcc
      121 tgacagcaag ttagagaatg gagccacatc gcctctgaaa gctatagaat ttcaattcat
      181 tacatgagat tggttagaat tcaagtctct ttttaagttg atattaagtt gagtctgtta
      241 tctctgtgaa ggctagtagg ttcccctgag tatccaccta atcactactt aaaaaaatcg
      301 aaacgtatag ttagtgtcat gatttaggta ccagagccac tttatttatc agtgcagagt
      361 gagataattt caatttgagg ctctgtagcc ctcatgaatt taaccatttt gaaagctttt
//
LOCUS       KCOD01003881             694 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 431819pyr ultra-conserved element
            locus uce-4236, sequence.
ACCESSION   KCOD01003881
VERSION     KCOD01003881.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 694)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 694)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..694
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="431819pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>694
                     /note="ultra-conserved element locus uce-4236"
BASE COUNT          158 a          146 c          153 g          237 t
ORIGIN      
        1 gctttctttc tagtagctgg gataattttt gctgctacag gtgtaacagg ttccttcaga
       61 ggcacttttt ggtagtgttt tgttttgatc atatgaacac tcaaatcctg aagagattca
      121 aatgaatgac cacagtacat acactttagc actttctggg catcttcttt cccttccatt
      181 tcgagcaaag aacgtttgcg aggtttggac catcttttgg ggttattgtt atccgtttca
      241 tggttgtcat ctcgataatg tcctgtttca ttcatgtgca ctgttaattc tactaaagta
      301 tcgtaggcag cactgcagtc tttacagcgg aatttactgg ctccagtgaa tatagagcca
      361 tagagcttac tgctctgtct gtacagctgg actgtgctaa aaaggctcgg ttcaggcaga
      421 attctgctct gcgaaacttg ctgcagtgtt ttggccattg cagtctggtg ccagtcaaag
      481 ctgccacttc cacaactgct gctgctgctg ctgctactgc tgctgctacc gttgtttttt
      541 tccgaaattg gctggtgaag gttcaaattg agattggacc agtaggaatt ggagaggaag
      601 ttattataca cggctttcat ttgttctaaa ctatcagaaa ctgtagagtc ttccagtggt
      661 atggaaacct ccttgctctc ttcctcattt ttaa
//
LOCUS       KCOD01003882             540 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 431926pyr ultra-conserved element
            locus uce-869, sequence.
ACCESSION   KCOD01003882
VERSION     KCOD01003882.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 540)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 540)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..540
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="431926pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>540
                     /note="ultra-conserved element locus uce-869"
BASE COUNT          165 a          120 c          111 g          144 t
ORIGIN      
        1 ggcttcagat cgcgtgcttg agaataattc gactccgagc cctggaagag cccccttttt
       61 tttaagtgtt tggacaggga cgtgtttcag ctctgatcgt agcagaagaa cttctcaaaa
      121 gcctccctct cttcggcaaa tatggtataa tttacagagc aacttaataa tccgagggcc
      181 accgcaaaag ccctttgcgt tgtaaaccgc ttctaattac ctgccagagc aattagctga
      241 ctatcacgaa gaaattagat cgctcaatgt agcataaata atgcgaataa ttttgtaagg
      301 agaatggaaa gcgagacctg gtgtttcttt ataaggaaat aacacctcat actgtacgaa
      361 ccctacatga acacatatta atgtctaggc atgcacggaa atgaatccga acatgaaccc
      421 tctggcttag attcagcact ttcttcattt acatatgcgg ggtgaaagtc ggcttccagg
      481 cgtttagata cagagctctt ccagatcaca gtaattaaca catagcgact tcaataggaa
//
LOCUS       KCOD01003883             299 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 432028pyr ultra-conserved element
            locus uce-2839, sequence.
ACCESSION   KCOD01003883
VERSION     KCOD01003883.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 299)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 299)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..299
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="432028pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>299
                     /note="ultra-conserved element locus uce-2839"
BASE COUNT          109 a           51 c           52 g           87 t
ORIGIN      
        1 agagagagag agagagagag atatgacttt ccttgaatga tctgtttaac ctaaagaagt
       61 cattaattac ttatgtgagc tattgcttct gaaagacaat aaacctgcct ggtcgccatg
      121 gatatgacat atttgctctg aaaacaacac aataattagc aaaggggaaa gatacaagga
      181 gaatatgcaa actcctgagt ttaaagccat agcgtttcct tttacttgtc agagtcaatt
      241 ctgtttgcaa ttcaaatcaa acaaataaac agaatacttt tttaaattat ttcccacac
//
LOCUS       KCOD01003884             650 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 432137pyr ultra-conserved element
            locus uce-1652, sequence.
ACCESSION   KCOD01003884
VERSION     KCOD01003884.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 650)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 650)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="432137pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>650
                     /note="ultra-conserved element locus uce-1652"
BASE COUNT          213 a          105 c          125 g          207 t
ORIGIN      
        1 gactgcctag gaaatttcat ttggggaaaa tatattaaaa cataaataat cgagctggag
       61 ccctgctgta ttcaaaatac gaacttgttg cttttggaaa aattagcacc attttgtagg
      121 acagtagagt taaatgaagg agggtgattc tttcatttct gctctataga atgatgtgcg
      181 ctaatcagca ggcaatgccc tgtcagtgag ctaattcaac tccctgctaa aagaagtgta
      241 gattaatgga taaaggaggt ctgtggtagg gtcacactga tatggattca acgtgtacag
      301 cagcttgtca gatgcctgct tggattaaat ctaacctttc ttgttgaagg ttgccattta
      361 ccctattctt tagtgcctca atttattttc ctcccagaat ttccacataa aaaaattatc
      421 atctatttgc ttttcagagc aaatttagag aaccaatttc attatctgta agaaacctgg
      481 aggcattaca tacagaaaaa catagggaat atttaaggga catcatacct gatttattct
      541 aattctcaat gagaaggaga gttaatttta caaagaaaag gccagaattg ttatgtaaaa
      601 ttatttcaat ttaaggaaac tttaggttct acttctttta ggaaaaggca
//
LOCUS       KCOD01003885             302 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 432249pyr ultra-conserved element
            locus uce-5752, sequence.
ACCESSION   KCOD01003885
VERSION     KCOD01003885.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 302)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 302)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..302
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="432249pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>302
                     /note="ultra-conserved element locus uce-5752"
BASE COUNT          104 a           54 c           47 g           97 t
ORIGIN      
        1 cactgagagg cttcataatg tcctgcattt aagtcctgaa catcatacat aatgcatagg
       61 aagcagtcgc tgcactctga ttacagaaca ctgtcattaa gagagcaaat taaagatgtg
      121 aataattcac tggctgagct tattgtcagt gctgcattgt gaaattagaa tttctaataa
      181 gtactgcaat ttttttaacc caattaacac agagaacatc ttgagtctga ttagtacaat
      241 aaaaattatt accttattct tttgcttcac aacagccaaa ttaaatactg tacttaatta
      301 tg
//
LOCUS       KCOD01003886             530 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 432358pyr ultra-conserved element
            locus uce-292, sequence.
ACCESSION   KCOD01003886
VERSION     KCOD01003886.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 530)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 530)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="432358pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>530
                     /note="ultra-conserved element locus uce-292"
BASE COUNT          190 a           74 c          124 g          142 t
ORIGIN      
        1 tcttgatagc accatttaca cattctttaa agtaaacaat atgcactttc ttagaaagcg
       61 atataaatat atatataaat acaggacgtg ctaacctctg ttaaccatct gaatgtgatg
      121 gaataatcta tatctactgt gcaggtaggc ttgtgcatgg tggtgtggca atataatttt
      181 aaaagtttgt tacagatgtg atgggaagct ggaaggagtc gaataagcag aaaaaagagc
      241 ttagatctac tgtaagcaat gagtcggaat gagccgttaa aggttagaat ttatctttgt
      301 ttctgatcat tcaatgagaa aaatgacttc cacagaaata gataccttaa aaggggaaag
      361 ggtggcaagg gtgaaatagg attgaaagtc ctataggtaa tagcaataac tggaagtgca
      421 gacgaaattg ttcttcagac caatgaggaa cgcagccgtt taaaaagtct caatgctgtg
      481 gtgctgaaag aaaagctcct ggtgaaaaag aaaaaaaggg caatgcggct
//
LOCUS       KCOD01003887             764 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 432468pyr ultra-conserved element
            locus uce-2878, sequence.
ACCESSION   KCOD01003887
VERSION     KCOD01003887.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 764)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 764)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..764
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="432468pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>764
                     /note="ultra-conserved element locus uce-2878"
BASE COUNT          237 a          124 c          172 g          231 t
ORIGIN      
        1 tatgacaaat ctgaagcacc tgaagaatat gcctcagagt atgcagagga aggacattat
       61 gaaggcaatg atcctgagct gacagaagac caaatagaat atggggaaga gcctggagaa
      121 gaagatgaag tgctagacct tgaaatcaat gaacccctag atgaatttcc agtgagtttc
      181 ttctgttgta tcttcaaaga tagcattgct tcacgtgcat agggttttag actgatttaa
      241 aatctgttta cctccctagg gaggagggaa aattagacct attatcactg tctgccagtt
      301 tctttatcta ggctgtgaca aagtttgtgt tgacagcttg tttggcggta ggtaatgctc
      361 ctttgtcatg ctggaaagca gttgagaatc atgaccttga ggattgtatc cttaaggaag
      421 aaaacagctt tgtgtggtgg agatacactg ccaattgtta gaagtactta atgcaaaagc
      481 ttttatccag gctttagaca agatctgata aagtccttcg aaggtgaaaa gattattgac
      541 ctgctaaaga catctttaag gtgctaatat cccaaagtga ttgatgtcct gcttgttcat
      601 cctttttgta actgagagct gtctaaacct gaataaagag attggaggtt agttcagaaa
      661 atgtcacctg cataattcga tataatttaa gcagcatgta gagaacatcc cctggcttta
      721 attgctaatg aaatgattta atcttaatta aaactgtgtg tgtt
//
LOCUS       KCOD01003888             587 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 432576pyr ultra-conserved element
            locus uce-5590, sequence.
ACCESSION   KCOD01003888
VERSION     KCOD01003888.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 587)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 587)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..587
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="432576pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>587
                     /note="ultra-conserved element locus uce-5590"
BASE COUNT          158 a          139 c          140 g          150 t
ORIGIN      
        1 aattccagct gttgaatcag gaatattctt tttattgtca gtgagtaaat ggggaaattg
       61 ccaacaaaat gaagagatgt gggtttgctt tgactcttcc aaccctgcct aatcatttcc
      121 caataggctg aacactgccc tgaggcagct ggtttgagca gggaaggcac cctttctaca
      181 cggaatgcac ctggtttcca tttctggacg tgtgagtgtg atatcagagg ggagggcggg
      241 tggtgcagcc ttactgtact tctcctcctt gcacctctgc aggatctcta agctcctctg
      301 atgcactggg tggtggagaa agctaaaact atccacactt ttcaaaaccg cacatggcac
      361 tgcatcatca tgcccttggg aagcaaaata aaaactaaaa gcagaaaggg gaaggaacaa
      421 gcccgaaaga gctcgagggt cacacgtttt cgtgctcgac ctgcggtttc ctccgcacgg
      481 ccggggcacg ggagcaatgg gctggaccac atcccactca attataatcc tcatcagata
      541 atcactccaa gattatatgg gcagataaat ctttattttt attaact
//
LOCUS       KCOD01003889             796 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 432688pyr ultra-conserved element
            locus uce-2950, sequence.
ACCESSION   KCOD01003889
VERSION     KCOD01003889.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 796)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 796)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..796
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="432688pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>796
                     /note="ultra-conserved element locus uce-2950"
BASE COUNT          269 a          144 c          142 g          241 t
ORIGIN      
        1 attttcaagt agccaactac tcagctgcta aaatgtaagt cacatacaga atgtatgcat
       61 gcttgattct acactgtttt ttaaagggaa aatgctttat gtgtgtaaaa agagaaaagt
      121 gaaagaaaaa aatgaataag catgtgaata attagatcag agttagatgc caccttttct
      181 cagtgttgaa actgtgagga gaaaaaaagt gctaccatat aattgacata attgatctat
      241 ttttttccct ttcttgctgc agtaattttt tatgcatgcc attgttgctg ttattatcca
      301 agatgtgatc ttgtgtggtt gataatactg actagatatg aatactggta agtaccagcc
      361 aatcacaaat ctatagtgtc tatttctgca tcaccaggtg ctatctcatg ggaaatatcc
      421 tcttttttgg caggcacaca gcgctctgca ttatctgtca ttttcattag attcaagcta
      481 cagctgagcc aaaaagactt agttctagca tatgtgctca aaatggccaa gatgagattg
      541 tccaaattca ccctttcagg attgtattag aaaacaactg gagctaaagc taaaaattag
      601 agctagcaaa gtatctgaat tacatttggg aaactgcaaa caccataagc tcaaaagatt
      661 tccagcttat cacagtcatc acctccaaaa gctccaagga gcctaagtca gcaatttcta
      721 tgtttttcaa cacttctttt gtacagacta aatgtgatga tgtcaacaaa gaagagcaag
      781 gacatcacaa gaagac
//
LOCUS       KCOD01003890             873 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 432800pyr ultra-conserved element
            locus uce-464, sequence.
ACCESSION   KCOD01003890
VERSION     KCOD01003890.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 873)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 873)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..873
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="432800pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>873
                     /note="ultra-conserved element locus uce-464"
BASE COUNT          273 a          176 c          159 g          265 t
ORIGIN      
        1 agcaccacat taaatgaaga atgcttgata tctaacccct gatttggaaa gctgacttac
       61 gtggcggggc catgtaatta agctgacaac ccacaatttc acacagaaca gaagtccaag
      121 actgaagaac atgaacactg aattactttt aaacaaagaa acaggaatgc aatcttgaac
      181 acagttatta aaaaaatgag agcaacattc tggagtaatg agcagagatt actcattccc
      241 ttgttttaca caagttgact tttggctttc tgcagaacac catttaacag agcacattac
      301 caagctgcta gccacttttc acagtgatgc taaagcaggt aagagacaat aagtggaact
      361 gttgatggtt tatattactc tattatgtta atgttcacta aagtatgcca taagctctct
      421 cattacatgt gtataaacca attctctgtg gtgttattcc tgtgctaaat gctataacta
      481 cataaatctt gaattaatgg agactttata gttcctgaaa atgaagggta attgctatct
      541 gttaatgctg ttgttgctat taaaggaagt atatattttc agtaacaatg tttatggacc
      601 gtgagcttca catctcagct actgcacaga gcagagacag tgtaatacaa gtatcagact
      661 gactcccttt ctctccctcc tccctctccg tatcatttct acagcttcgg caagcaacac
      721 tgcaatcctc ctaatgtcct tcattgaaca tacagtaaag gaaacaggat ttgcattgcc
      781 atctctggga atgcatgatt tgctaagttt ctcgcttggt taaatggctg gacagctcac
      841 tttattagtt tgggtatctc aaacagttct gtg
//
LOCUS       KCOD01003891             497 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 432908pyr ultra-conserved element
            locus uce-7539, sequence.
ACCESSION   KCOD01003891
VERSION     KCOD01003891.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 497)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 497)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..497
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="432908pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>497
                     /note="ultra-conserved element locus uce-7539"
BASE COUNT          108 a          119 c          136 g          134 t
ORIGIN      
        1 agagaacaag aaaggtcgtg gcagaagtgc tgccaggcat ggcacaaggc tggcaagggc
       61 accagaacta tccgagctgc ttgtaccagt cagctgccat ggctggctac cactttggga
      121 atggcagtgg ctgggaatgg gggatggatg gggatgggca aggattcctg ggtggcactg
      181 gcagctctag tgtcttctcc ctgctgccac atttctcctc tgtgcgaaga aaatactcag
      241 tgacctgatg gggctgccaa gggaaagttg aaggtctccc attaattcca gactaaaaat
      301 gacaaattca tcttctacga caattaaatg aagtcagtaa ttgatgctaa ttgatcttca
      361 gccgagaggg ctcttactgc tttgctgtgc tctccctgat gctctggcac ttttcccact
      421 tctcttcggg gatgtcccca gggccccgct cctgcgcttt gcatcttttt tggctgttgg
      481 agtttgcatg tattttc
//
LOCUS       KCOD01003892             641 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 433021pyr ultra-conserved element
            locus uce-904, sequence.
ACCESSION   KCOD01003892
VERSION     KCOD01003892.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 641)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 641)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..641
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="433021pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>641
                     /note="ultra-conserved element locus uce-904"
BASE COUNT          215 a           99 c          138 g          189 t
ORIGIN      
        1 aggagtaaaa cattcactct tccagcactt actgcactga cagcttgata aagtggttca
       61 aggcataatg ttcaaacaga gggaaaaaaa aattaaaaat gtaataataa agttaaatgt
      121 aactgtttta aagtataatt ctttggagag ctcagtttta tgttgggccg gcatttgaag
      181 ctgcactagt cattattaac gggaagcaca gatagaggag atttaaatca ctaaagtaat
      241 aaaatctgaa cgagggctag caccttgaaa ggctcttgga gagaagattg catacaaatg
      301 caattaaaac gatgcttata aaatactaag atgttaattg ggtttagtcc cagaagcccc
      361 agcagtacag tatgtcagaa gttagctggt ttgaagttta aaaagagtgg tttaatttgt
      421 acaccttgtc ctaattacga agctttctgc agcctgtgta tcggcatggt ttattgtagc
      481 ttagagcttt gtaaaacaaa cacacaccag ttaattgggt tattgcaatg gaaaattggg
      541 ctgcagaact gaaaccttcc ttgctagtgt ttttttacag cttgtaatga acgctccagc
      601 aatgtcagga tagactgatt tgtaaggtgt gcagtttaca a
//
LOCUS       KCOD01003893             437 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 433131pyr ultra-conserved element
            locus uce-7294, sequence.
ACCESSION   KCOD01003893
VERSION     KCOD01003893.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 437)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 437)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..437
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="433131pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>437
                     /note="ultra-conserved element locus uce-7294"
BASE COUNT          129 a           64 c          104 g          140 t
ORIGIN      
        1 attagttttc atagccactc caggtcttgg ggggaaaagc tgaaaagtac ttttgtttag
       61 aagtctgagt gatggtgggg gggaaacctt ttcttgaggt ttttgcatgc cagtgcacgg
      121 cccattgctg tgagagaagg ggtaaggctg cttgaggcaa tgcactggag gacaaagtgt
      181 tttctagcac tagaaaaaga aaatgcatgg caaagttttg tcttctagta gactatatag
      241 catgcagagt ttagtatgtg tcaaaacagt gtatgacatt gctgtatcaa agttgtaaaa
      301 ttaagcatta tttattgaaa actatgtatt ttttttgtaa aaacctgatc acctagagga
      361 ttaatatcag tgacttgtgc tagtgctaca aacttaacca gcttctttac tacagtactt
      421 gatatgcagt gttaatg
//
LOCUS       KCOD01003894             461 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 433241pyr ultra-conserved element
            locus uce-2680, sequence.
ACCESSION   KCOD01003894
VERSION     KCOD01003894.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 461)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 461)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..461
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="433241pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>461
                     /note="ultra-conserved element locus uce-2680"
BASE COUNT          121 a           80 c          107 g          153 t
ORIGIN      
        1 gtttttcttt tcaaaagtta aggactatac tctcagaagt ctgttcggtc agctgataca
       61 ttgtttgaat gtatgtatgt gtcttgcctg ctccctactt gaatttgttt attgggggaa
      121 ggaggtggtg gtgattacgt tgtttttagg gtttctttcg gttctattta acaatagcag
      181 tgaaagtttt gctgacagcg attatgacta ctaaacaatt cagtttattg gaagacgaat
      241 tctactggat catatcggac ttttcctagt ccctgagacc ctaacttgtg aggtttttag
      301 caacaatcac aagtcaggct cttgggacct aggcggaggg gaaccagcag ctttggactg
      361 tgattgtttc tctgcagaat ttagagaacc aaaggagctt tccttgcctg gaaggggaaa
      421 atatacctat ttcaagcatc agaactgttc ctaaaagaaa a
//
LOCUS       KCOD01003895             882 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 433349pyr ultra-conserved element
            locus uce-496, sequence.
ACCESSION   KCOD01003895
VERSION     KCOD01003895.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 882)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 882)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..882
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="433349pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>882
                     /note="ultra-conserved element locus uce-496"
BASE COUNT          268 a          173 c          165 g          276 t
ORIGIN      
        1 ccctgttaca tctgcaacac atcgtttggt ttatattcaa atcaatgatt ggcacataaa
       61 gcttttatct cctacctcct ttgtaaataa cagcacggag aggccacgac ttgtgcacac
      121 acgcagagtt cacaccccat ttctccggca gtaaccaggg ctccggtttt ccataaagcc
      181 gagtgttttt aaaaggaata tagctggatg ataaaagaac actaaagatt ttacttttaa
      241 taagaacagt gtgtccttaa aacggcatat ttagctagca gaatgttaac tgcaaggtaa
      301 gagtgttgtt ttataccctc agtaaccaga ccaattatct gcgaagtttt ttcatattta
      361 atgtatcccc agtctccttt caccatctgc ccttccccct ctaacattgt ggaattttta
      421 tgagatagga caaaaatggg catttccctt attaccatct cactgtggaa atcaaatatg
      481 caaggaaagt agtgtatata ctaattagtg ctgaattcat aattactgtg ctcattgatg
      541 gagatacatt tgaatacatt caactcctct gggagtggag caggctgtcc agaatagttt
      601 gaaaaaatgc cctcagcctc ttttcttctt gaaattaggg atctgtggca tacagtaatg
      661 ttataagaag aagatccaaa gtgcccgcaa tttctttaaa tataattaat caagtgaagc
      721 atgtaaccta atgaatgtat ttgatataag ctactgttca aatatgggct ttatctctgt
      781 ctgtgttgga attactaaaa ggagaggaca gaggatcagg cattcctgtt taaaatgtta
      841 ctcaatggtt ctcgttgcat gtcaacagta cgcgagcttg tc
//
LOCUS       KCOD01003896             664 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 433459pyr ultra-conserved element
            locus uce-4067, sequence.
ACCESSION   KCOD01003896
VERSION     KCOD01003896.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 664)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="433459pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>664
                     /note="ultra-conserved element locus uce-4067"
BASE COUNT          231 a          119 c          118 g          196 t
ORIGIN      
        1 agttcataca ggaatccaat tagcatatca ttgtgactga ttaaatatgc ctcatgtaaa
       61 tttacatgtc aaaatacata ctgtacttaa acaaacagac aaggatgcca gtcttctgta
      121 aacagctttg cattcataag ctaaacacaa aagcttatat ttaaattctc aatgactacc
      181 tgaatagagt gaaagggaga tagaaaggta atgttactca tgcatgaagt gagagaatga
      241 atatagacat ttgtttctct ttgtctctga agaaaactat tgacaagaga ttccccatct
      301 gcatatgagg ctgtcacgtc agattagctc atcaggtaat ggaaatttgg cctctgatcc
      361 agaaaaggtc cctatgcact aagaatcaag actgtttcaa agagattgta ttatcttaga
      421 cagcaggatt aaattaatat gggaatgact tctactggag gaaatttttt gttaaacatg
      481 tgttaatgtt tattatgcag agcatccact tttcataagt gatctttctt gacatttatt
      541 cattactttt tgaccttccc tgcaactgaa aaacaaacaa gtaagtggac cccctccgaa
      601 gcatggagcc aagacctcta aagatgcatt catgctagca caacttacga aacagtggaa
      661 gaaa
//
LOCUS       KCOD01003897             733 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 433570pyr ultra-conserved element
            locus uce-5005, sequence.
ACCESSION   KCOD01003897
VERSION     KCOD01003897.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 733)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 733)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..733
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="433570pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>733
                     /note="ultra-conserved element locus uce-5005"
BASE COUNT          244 a          130 c          130 g          229 t
ORIGIN      
        1 aatcctcagt gataattaat attaattcac ttttgtctta aacatgttag tagtctctaa
       61 aaattcctgc tgtcttgcaa tacccttttg tttgccaatt gtctgatctg cataaagagg
      121 aataaagtgt atgttatagc ccaagacatg tcttcactct gttggttttg taaataaagc
      181 tgatgattgc tattccatgg caaccataga aaggaaaaca ggaaatataa tgcagaaagc
      241 ctgcttcagt gaaaaatact gtaaattgaa tttgacagca tttgatggca tttgattatt
      301 ccagtcacag ccaaacaatg atataaagag taatatgaaa cagaatgtgt tactgcctag
      361 cagactcaaa agcaataaac cttcctccaa tgtgacacaa tcacttcaca atcataattg
      421 tagcctgttt gatacctctg agtacagcag aagggcactg actgacatag atacattttg
      481 ttttttattt aaagtgaaat gaaaatggcg cactggggct ccagatacaa tcggtatatt
      541 cacctacata ggcatgaatc acttggcagt tatttcagct gaagtttaaa tgtgcttaga
      601 caacaacaat atcaaatctt tctcagatag ctgcaaaaaa atcagaaatg ggatgtaagc
      661 acatagttct ttttcatttt gtagccacac atggccttac attgttatag ctgcagtatt
      721 tctatgggag gtt
//
LOCUS       KCOD01003898             582 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 433681pyr ultra-conserved element
            locus uce-3167, sequence.
ACCESSION   KCOD01003898
VERSION     KCOD01003898.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 582)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="433681pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>582
                     /note="ultra-conserved element locus uce-3167"
BASE COUNT          165 a          133 c          117 g          167 t
ORIGIN      
        1 agatctatga caacatctaa tgcattttgt gagaccagat gtcaacagcc tgtctaggcg
       61 atgtgtaact ttttgtacag cagaacagga aaacaaaggc tcatacattc agctctgaat
      121 tgaaattcca catggagctg atcttttgag cattgtttgc ttttattaac aaaatgtacc
      181 ttaaacagtc ctttgaattc aacaaaagac agctctctct ccctctctcc ttttgttggt
      241 aatcttactg caaaaatgtc tgtgttgctt tttctccccc gccccatccc ctgcctgtaa
      301 aatcgaagtt ggacaaacac tgcacggctg aagtgacata tttgaatgga attcagacca
      361 accagttcct gtttatgttt ctgatttgag aatgtagcct tctcattcac tatacattag
      421 aaacacacca aggccataaa tggtgtcagg ttgcaggcag gcagggccaa gcagcattaa
      481 tcattacttt aaggcaactg gcaaaagcag cagctgaggg aacactacac ccttcagctc
      541 cgcataaatg gacattccag ggtttggcgt gtgtgggttg gc
//
LOCUS       KCOD01003899             603 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 433792pyr ultra-conserved element
            locus uce-4559, sequence.
ACCESSION   KCOD01003899
VERSION     KCOD01003899.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 603)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 603)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="433792pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>603
                     /note="ultra-conserved element locus uce-4559"
BASE COUNT          169 a          138 c          112 g          184 t
ORIGIN      
        1 tcttaatttt ctaattcata ttcattaatt aaaaataaac ccttttgatg aatgaattta
       61 cataaaccag ttgctaaagc accctaacac tgtaggagtt cagcctggaa catttgcatg
      121 cagcatcctc agacgaaggc aggcgctttc gatttccatc gagagccttg ctgcgctgga
      181 actctaatgg gcttagaaca gtaaattttg aagaaactga ttgctgcccc cgtagctagt
      241 aaatgcctgc ctggacccag tggcatttga aaaaagtgtt ttatcataaa attatcccag
      301 cagagtccat tctgcaagat aacatcatca tcatcatcat catcagtact ccatgcagga
      361 cccaacagct ctggcacaat attgccagtc atttatctgt tgtcagcaca ggttacacac
      421 tgtaatcctt gactgcctcg gaattagaat gtctttgatg tccccacaag agttttttgc
      481 ctgaaggctt taccaatgct cggcggctca gtgtttattc ctcgtaatct tcctctcatc
      541 tccaggctag cagtgacaga tggttatggg cacacaatag tattaagagt ttgatatttt
      601 ttt
//
LOCUS       KCOD01003900             506 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 433903pyr ultra-conserved element
            locus uce-4537, sequence.
ACCESSION   KCOD01003900
VERSION     KCOD01003900.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 506)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 506)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..506
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="433903pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>506
                     /note="ultra-conserved element locus uce-4537"
BASE COUNT          146 a          105 c           95 g          160 t
ORIGIN      
        1 agacacattt cctggaggga aatggacacc tacctacaca caaagctatc cagctaattt
       61 ataccttgtt gaatttataa tcttgtctat gcttctatgg acactttgta tgggctgcag
      121 ctcaaatcct aaaatagtca agaatttttt cctttcccat atagtattct atttactttg
      181 actttgaaaa caaaagcgta taaatgcaat aatgcaggta gactagaaat actagattga
      241 aaatttaaag tagtttagct tgtcccattg tgactgacag tgttgtacga cacccaacgc
      301 tgtaccctga cattttccag gctttctccg tagctgaatc tagtattagc tttggaaacc
      361 cattgtgtga gtggtgggtg gatgggtcgg aaacgtgtgc tctctacacg ctgtatgtta
      421 ctcacatcac aagctgtatg gccactccat atgctgtgaa actgtaaatg attcccaaat
      481 acacctgtaa ctcttaccag gattgt
//
LOCUS       KCOD01003901             627 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 434011pyr ultra-conserved element
            locus uce-3441, sequence.
ACCESSION   KCOD01003901
VERSION     KCOD01003901.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 627)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 627)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..627
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="434011pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>627
                     /note="ultra-conserved element locus uce-3441"
BASE COUNT          193 a          141 c          124 g          169 t
ORIGIN      
        1 tctatccacc tccattgtta agagcttaag tggagagtaa acagtgtaat gccattgtga
       61 actgcagcct ctctaaaact tgttaaaaac tgtagacaaa cttctgtatt gtgaactttt
      121 ccccctcttg aaatacccca atcagtactt ttggtacaca tacctcgaag aattctctcc
      181 tcatggcaac gtagaaagtc ccagattcta acagtgccgt cgtcagagca tgtagcaaat
      241 ttattatccg tgggtgagaa actgttacat gaagacacac agcaggggaa agaagtcagc
      301 atttaacaga ttatctatgc ttctcagaca gggcaaaatt atactgtaat gtgttataca
      361 ctgaaggagg catttgaaca taggcacttc taagtgaata cagtgcctgc caaacaagac
      421 atgaatttag cataggatta ctgcagtccc ctgtcagcac cttcctatct gtgactgcac
      481 atagcagtgc cttctctgca ggatgagaag caacatcaat atgatttggt agtcacccta
      541 gatcacgttt ggtaacacca taagaaagtg acactgcata gaagcacagg aacagttctt
      601 aggctcctct tcagccacag gtgcttt
//
LOCUS       KCOD01003902             651 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 434119pyr ultra-conserved element
            locus uce-3905, sequence.
ACCESSION   KCOD01003902
VERSION     KCOD01003902.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 651)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 651)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..651
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="434119pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>651
                     /note="ultra-conserved element locus uce-3905"
BASE COUNT          214 a          108 c          121 g          208 t
ORIGIN      
        1 ttaggaacaa tttagtatca tttcatttaa aatatgcaag ctttatatcg agagtaaatg
       61 tgtagccaca aggtaaaatt tatattagtc tcatcattaa aagtctttaa agtttccatt
      121 atccattatg ccaggtagca aatatcttct caatgtaact ccagacatta aatctgtcaa
      181 gaggcatgca gtaaaataaa tgtctgggat accttcataa acaaaaatct tatttccata
      241 attcatacag ctggctggca tttattggca cgtcaggtgc aatggggaca tttcaggaac
      301 attaacatgt acagcatcat ttgtcaacaa agcaacaatg taagcaaatc gttcagaact
      361 catacagatt tacagctttc tctgccagct gctaattacg gtgtgctctg cctatttggt
      421 atggtctttt ttattggaaa atgacaaagg ggttatggta tcccagtttg gaatatagat
      481 gcgcttttag taataatatg agtggtaata tgactacact gcctggagtt ttgatctagt
      541 tgcactagtc tgataattga ccggttctga ttgatgaagg acaaagagaa attcgcaggg
      601 atagaagtaa cctctgcaaa caaagaaata attatccttg ctttaatatt g
//
LOCUS       KCOD01003903             758 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 434231pyr ultra-conserved element
            locus uce-4355, sequence.
ACCESSION   KCOD01003903
VERSION     KCOD01003903.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 758)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 758)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..758
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="434231pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>758
                     /note="ultra-conserved element locus uce-4355"
BASE COUNT          223 a          122 c          151 g          262 t
ORIGIN      
        1 tcagagtact aatattttga tgcatgtgtt tcaccttatt ttgattaaat cttttccagt
       61 tttgcaaaca ctataccgca acatgaaaaa taagatttta tctgtaaaca caaagccctt
      121 catctaatat ttgttgctgt tgccaatttt tcaatgaaat tacctaagac ccataacata
      181 tacagtagtt gcattatggg gaggggggtg ctatctgttc tcgctttata atgggggtag
      241 ctttagaagt gggttggtgc tctaaggagc acaagtttgg gatattttta aatgaactga
      301 agagaaatta ttagctaata gactggcagc acgctgtaaa attattactg tattgtgtac
      361 tggctataag atgtagaatc tttcagtaag ccaatcatct gtaatcatcc tagcagtgta
      421 atattaggtt gttaaggctg ctgtgtttta aagggcattt ttatttgggt tttggtgaaa
      481 tactttaatt tgttgattat attcatatgg aaacagcatt cattgataat agctctaatt
      541 acatatgtat gaaaacaaca aacactggat gatctagttg attatttaag cataaaataa
      601 attgtgttaa aactcttgga taatgtgtat tggcagtgtt cttgtaccct acagacatga
      661 ggttaactgc ccctggcttt cagttgcttt tgtctgatcc acttcctcat cttcccagtg
      721 tccccaggtt ggggcagcag gaggaaaaca cagcagcc
//
LOCUS       KCOD01003904             382 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 434339pyr ultra-conserved element
            locus uce-2392, sequence.
ACCESSION   KCOD01003904
VERSION     KCOD01003904.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 382)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 382)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..382
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="434339pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>382
                     /note="ultra-conserved element locus uce-2392"
BASE COUNT          122 a           61 c           76 g          123 t
ORIGIN      
        1 aggagaggaa acgatcattt ttcctcctcg tgcattctta ctattgacca aggttattct
       61 ctttatcatg tgcagatttt attgagtgat gccaagtgag atgaatagaa gcaaataatg
      121 acagtgctgc agtgatgaaa tgagagacag aggtcgtcta ggttttatac tgaacaaatt
      181 gagtcacatc cacttctcat ccattattta ggggtgattg ggcaggcttg gcttctatag
      241 atttgataat cattcagatg tccatattaa atatgtaaca taaatttctc atttggctgt
      301 cgatgacttg tcaccgcaaa acaacaatgc ataaaaaggg ctttaatgta tggattctca
      361 gaaatatttg acataaataa at
//
LOCUS       KCOD01003905             488 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 434448pyr ultra-conserved element
            locus uce-7884, sequence.
ACCESSION   KCOD01003905
VERSION     KCOD01003905.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 488)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 488)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..488
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="434448pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>488
                     /note="ultra-conserved element locus uce-7884"
BASE COUNT          158 a           77 c           97 g          156 t
ORIGIN      
        1 gggggcttta tgctggagaa agggttaact gggactctct ataatttgtt cctatttcct
       61 ttccctccct tcagctcctt cacaaaatgt taatctaatt gtgatagtat cactttgatg
      121 acaatatgac aagacagaca aatttgattt tattctccac agagcaaagc atatgctgct
      181 tgggagactt tgacagagag aaggacataa aacaaatgga gttcatgaat atacaatttt
      241 tattgtacac agtagtgaca tccaaacttc agagaatagg tgggtgagac ttatgcttta
      301 ctattgagat taatgggtac gtaaaaaagt gccaacagag agtactacag tttatgttaa
      361 aaatgtcgac gtggataaga ataattttct tctcaagatg aatgatgcat ttaatggctg
      421 tgagacattc atggccagca gcagttcctc aaaagtaatt ttttgttgtt attgtaaatt
      481 acataatc
//
LOCUS       KCOD01003906             463 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 434552pyr ultra-conserved element
            locus uce-4967, sequence.
ACCESSION   KCOD01003906
VERSION     KCOD01003906.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 463)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 463)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..463
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="434552pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>463
                     /note="ultra-conserved element locus uce-4967"
BASE COUNT          145 a          101 c           93 g          124 t
ORIGIN      
        1 tttactactg ctattctagc tgaacatata tatgagttta tagaaacagt acaggtattt
       61 cagaggtgaa aagattttat gcttggattg aagggtggaa aacttcattc tctaaatcac
      121 agcaatttca ctgttataca tttgacagca atcatacctt cctcctactg cgtcgtcttg
      181 tggctgggcc ccggcagtgt tcctctgtga acgtcgcagt gacccccctg gattgttatt
      241 aggccggttg gacattggca cctctctcct gaagggacat accctttcta gacactacca
      301 ttcactgaaa gacaagagag gaaaagacat gtggcatgaa gactcactgc cacgcctaaa
      361 tgtaaaagca aaaactgaag acaaacttgt aaacaaaaaa gatacatgga caaggttctt
      421 ctcaagaaca tttagaacct taatacagag caaccaggct ttg
//
LOCUS       KCOD01003907             484 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 434661pyr ultra-conserved element
            locus uce-5910, sequence.
ACCESSION   KCOD01003907
VERSION     KCOD01003907.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 484)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 484)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..484
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="434661pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>484
                     /note="ultra-conserved element locus uce-5910"
BASE COUNT          158 a           93 c           73 g          160 t
ORIGIN      
        1 attatagcag aaatcatctg ttatattctc gcataaagca aaactaggtt tgtaagccct
       61 tgcccctaat ctttctttca attttcttcc atttaaaaaa catctttccc caatactcta
      121 attaatgcaa atgatattca tgattagtta gtattatgct aatctgagcc ccaaatttcc
      181 ctaaatctac atggtgttgt ctgagtacca gattgctttg ggttcctaag taaaattaca
      241 ttagcctgcc agctgtacaa aacaccatga tagagtagaa atccaagcaa atcatcaaga
      301 ttacattagt tttgtttctt aatgaacaac tgtttgcatt agggattaca gacaaattat
      361 gattttcctc tctgtaccca ggcagccagg catctgttga gaagtttcac taaatagatt
      421 gaggagagct aagacagaga gacgagtcta atatttcaca taattgaatt ttttccatta
      481 caaa
//
LOCUS       KCOD01003908             610 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 434749pyr ultra-conserved element
            locus uce-5882, sequence.
ACCESSION   KCOD01003908
VERSION     KCOD01003908.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 610)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 610)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..610
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="434749pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>610
                     /note="ultra-conserved element locus uce-5882"
BASE COUNT          155 a          127 c          144 g          184 t
ORIGIN      
        1 gggccagcac cctgtgggca cgggagcttc ccgcgccagc agatgcgagg gggatacggg
       61 ggaggccctg ccctgtgcac cccttgcctc tcccaggtca gcccttcacc ttgttggcaa
      121 tattgctctg ctggcgagga cactactgta cagttcaggc actgcaggtt tctaatctgc
      181 ttatttataa ttcaaaagct tgcccatata ttaatgaacc cttaatgagc tgttgaaaat
      241 gcctgaatta cagtcagatt attaaactcc aacagcccct gtaatcatac catttgagtg
      301 ggctttaggt acttttcata tctgcagctt tgtattgtga aggagatggg tttattcgaa
      361 gaaagctttg taataatttt gacctgcaat ttatttattg gcctctgaat gcagtagtct
      421 atgcagatgc tctcgtctat tatgtgtggg ggcaggtgca cagcatgttg aaagacagct
      481 aattacgatt tgctgaaaga tatgctaaaa ctgtggtctt agaacaaagc caagttcact
      541 gttaaacaat gttttagtgt ctgtttatgt ggtttgtcta aatcacagag atactgaaat
      601 gcacggtgta
//
LOCUS       KCOD01003909             659 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 434848pyr ultra-conserved element
            locus uce-4828, sequence.
ACCESSION   KCOD01003909
VERSION     KCOD01003909.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 659)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 659)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..659
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="434848pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>659
                     /note="ultra-conserved element locus uce-4828"
BASE COUNT          222 a          167 c          111 g          159 t
ORIGIN      
        1 aaacacctgt attcttgatc taattccctg caacaaactc cctcagcgga ctagttttgc
       61 tcaaggaggt ttggacaact caaatatttt atgcaaaaat ggaacagaaa gtatcttatt
      121 ctaccgaaac ttacccatta atgaggaagc ttagagctgc acagtaattc ccaaccaact
      181 gcaaaaagtt gagagtttga aaacactaaa gcacttttga ctatccagcc tttctgtgct
      241 tcaacactgg ctgcagtgta aggaaggact gaaggtatgt ggtctaaaca caacaaaagc
      301 cactgcctta ctctagatta aatatgcagg aagaggcccc tttgcataaa cacaaacact
      361 cagcaaatga gtaactggct caaatcagac gcctgctgtg cattctacct gtcctgatct
      421 ctgacaagct acacaaaggg gataggagct gcaaaatcaa atcatagcta aatactctgc
      481 tcctctcata gtaaataaca acagcaccaa caactccacg ccaaacattc atttctaatc
      541 taagcattgc tctggcacag agctgactcg tgtgctgtgc ccactttggc tcagccaccc
      601 atctcaccag agcagaagaa acacaaccaa acaccacctg taaaattaat tttcactaa
//
LOCUS       KCOD01003910             631 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 434956pyr ultra-conserved element
            locus uce-4676, sequence.
ACCESSION   KCOD01003910
VERSION     KCOD01003910.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 631)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 631)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..631
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="434956pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>631
                     /note="ultra-conserved element locus uce-4676"
BASE COUNT          169 a          132 c          122 g          208 t
ORIGIN      
        1 aaaaggcttt tccactgtaa cacaaggtct tttcttctat tgcctgccac aagtataatg
       61 acttgtgatt ttctgttcct tttgcttcca gaatgagctc tgatggagct ccctaatgat
      121 aacaaaccat cactgcagta atattgatac ctgttgtaat cactggcatt ctggcttttc
      181 aattttcact atttgccttg gatcaagtag ctctgtgcta atgcaacaga aggtcaccag
      241 atgaaggggc tgataacaga gagggactgt tctacttaac atgcatggag gattatgctt
      301 ttcagtcgtc ctcgagctaa tctttcaagt tgtccttttt tgactttctc agtttaatca
      361 gtttaatctc atcttccctc ttttctgatt acaaggattt tctgtagaaa ccttgcctcc
      421 acaataagga ccacgtggca atttattctt atattgattt caacatttct tttccactac
      481 cagggctctg ggggaagggt gagagctaga gggaagcaga agtgcctcct gcctagcaaa
      541 tccccacact tttgttatct gggaatctga ataatacact taagtcagaa atggcagcaa
      601 attggaaata gtcagctgtg attaaaagtt a
//
LOCUS       KCOD01003911             604 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 435063pyr ultra-conserved element
            locus uce-7309, sequence.
ACCESSION   KCOD01003911
VERSION     KCOD01003911.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 604)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 604)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..604
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="435063pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>604
                     /note="ultra-conserved element locus uce-7309"
BASE COUNT          200 a          109 c          117 g          178 t
ORIGIN      
        1 taaaaacatg aaagtggaag agaatcacta ataactatat tctttattca acaaaacctt
       61 gcttcgctgt atgttccagt gtactacagg caggcattat ccagcccctt tctgaatgtt
      121 ggcaggagag tttgctttcc caactctgtg aaattctaaa atataatgaa aatgctgcta
      181 ccgtactttc taagctcttg gtagatattt tcacttactt tgtcattttc aaggggggaa
      241 acaatggtgg catctgtgcc ctggtgctaa gtgctcattt gcatgcagag gcagagagat
      301 atccgtttat tatcaatttt atgcattact tcatttcatg gtgttaaaac aattacattc
      361 aaagggttca gcagtccaca gccaagctat tcagggctcc agcagcatca tataataacg
      421 ttattcaggg agagacacat acatcatagt ttactgactt agaagtaaaa aagagaagca
      481 actcctatag agctggatac agaatttgta aaacatcaga gatataacaa taagcgagaa
      541 gctcagggca gatggacatg aaatttatta gcttctgaat tattttccaa gaaagttgag
      601 aaaa
//
LOCUS       KCOD01003912             516 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 435170pyr ultra-conserved element
            locus uce-3443, sequence.
ACCESSION   KCOD01003912
VERSION     KCOD01003912.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 516)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 516)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="435170pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>516
                     /note="ultra-conserved element locus uce-3443"
BASE COUNT          172 a           93 c           81 g          170 t
ORIGIN      
        1 ttaccatttt catatttagg acactaaaat gagaggtctt aagtacaaaa taaaactacc
       61 ttcagaaatt agtaaaggta tagactcagc taggagctcc atttgttttt cttttacact
      121 ggttaaaaaa aaaagaaggt ctgtttcaaa tcctatttgt cccttatctc tgtttgttca
      181 gttgttttta atatcacgta ctgaaagaat ttcaatagct gtttcaccat gaagtcattt
      241 gttatccttc agcaggcctt tgcctgctga attgtaaagc agcctcgact atttgcatcc
      301 tccagatgga gcagcatata aacactccca gatatttctg gtaagtatga aaaaatatct
      361 tatttgtcct ttctgtgaat aaataagaga atgtcaaatt ttatagacta ataaatttgt
      421 atgtcggcac tgacattgaa tctctcatgg cctgaaatgt cacagaccct gagaaacaca
      481 atttcaaata tacactaagt aaaatagaag cgcaat
//
LOCUS       KCOD01003913             561 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 435276pyr ultra-conserved element
            locus uce-3906, sequence.
ACCESSION   KCOD01003913
VERSION     KCOD01003913.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 561)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 561)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="435276pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>561
                     /note="ultra-conserved element locus uce-3906"
BASE COUNT          187 a          117 c           98 g          159 t
ORIGIN      
        1 aataacctaa attcaagtaa tgaaaactaa acagtgcaag aaagacatgt acagctcctg
       61 aagacaaaac gtagggtttg cataagttgc taactaaaaa cccctattca gttagccacg
      121 ccagtatctt cgtgtttcta ctgtttgaca caatgatgga ttatttattt actgaacagc
      181 actggtggcc agaaaatctg attttcatgc atgaaatcca tgaaacctca gccactgaac
      241 agcttctttt acacgtggca aaggtcacct atcaagggat tttctcacgt tttgtgtgat
      301 tggtcatgcc tcatttcctt caagaaaata tgatttcccc aaagtgtgtg cattttaaga
      361 gactctcaaa gactgagaaa gttatttcct ctttgtttgt gataagcaca aaatatagag
      421 actaacctac agggaacgac aagcaactgt ttgtagctgg aaaccatatt taatcctatc
      481 attaaggaaa acctcagagc acactaggaa caaagagtgc aaaactcggc acttaacctt
      541 gtcacttaac ctttcagact t
//
LOCUS       KCOD01003914             838 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 435383pyr ultra-conserved element
            locus uce-2004, sequence.
ACCESSION   KCOD01003914
VERSION     KCOD01003914.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 838)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 838)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..838
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="435383pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>838
                     /note="ultra-conserved element locus uce-2004"
BASE COUNT          218 a          179 c          144 g          297 t
ORIGIN      
        1 agagttcatt tttcacacct acgcaatgtc aacacctgtt tagctgtagg ttttaaaaaa
       61 agcaatgact tactctaaca tgtagaagta ctacatttct gcatacatga tttattttaa
      121 ttttatttca tattattcaa cataaactat atatctatac tgtattgtgg gtaaagagaa
      181 tctctgatga acagttctag agaggcagat aatttccttc acttaataat agttttcttt
      241 tctcttggct gcagactttc ataactagca ccatgccaaa cattcgaaga ttggattatg
      301 gcctgtcgta cttgattatt tttgtcagca tgctgaccca gggtgccctt ttcttgtgtt
      361 gttccttctg tttccatttt tcatgtcatc cagcttttca tcttgtcaat cagcttttga
      421 cttcctgatt aaagtgtctg tcacacgagc agcctggtct ccagtcagtt gtttaatttg
      481 ttcctcatgg catccaattg agttattcat ctggcccagc tgttcccaag tgctccagca
      541 tcactttttc atgtgtttgg gtttaacctc tatatctgtg tacaacagtg tgaatcgttc
      601 ccttcattct gttgactgtg gattgctttg cctctgtcta atgcctcgac attgctagga
      661 aggctgctac tatattctgt ggcttaacca aaagcactgt ttcaccctgg tgttatggga
      721 acaagtacaa ctaaacacac tcaagtatta tagcaggccc aatctttaac aattaggaac
      781 acgtaatgga aaactctgct ctcagggatc tgaatccacc caaaaaataa tgttgatg
//
LOCUS       KCOD01003915             668 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 435593pyr ultra-conserved element
            locus uce-1752, sequence.
ACCESSION   KCOD01003915
VERSION     KCOD01003915.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 668)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 668)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="435593pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>668
                     /note="ultra-conserved element locus uce-1752"
BASE COUNT          216 a          118 c          129 g          205 t
ORIGIN      
        1 ggggagaatc aacattgctg ttcttgagat gaacctatcg gcgtatgttg gccaaacaaa
       61 actgtaatgc aagaaccaaa taaaattatg cactgtgatg tggcaccaat tagaaagatt
      121 ttttcacgta gagtgaaaat gagaacatac catggcttga agttgcaaaa ctcctgacta
      181 ccattttgac tgatcaagag actaacagat taaaacctca gcaggccttg ttaatgttat
      241 gcagaaaaaa taaagtgctg cagtttagat acctctggaa cttttccaca gtgtcacagg
      301 tttgtaatac ttgaagccct acatttctaa gaatatattt cttgctcagt tgtttcaggc
      361 aagcccaaga ctttgtaact tttaaggggc ccaagatttt ttttcaataa cagaccagct
      421 tcttattcct gcagttacag atgtaatttc ctttgtcaaa cataaggtac caaatataat
      481 gcaataaaat gttttgaaaa acaactgtgt gaatatttaa accaatctat gttgtacttt
      541 gacagtgaat tggagtgcag ctcattactg tgctgtccag tcatgctaac aatgtcactg
      601 ctgtgggtgg tcattgagta taaagtgcaa atgcattata tgtaaatact gaatgtctgg
      661 gaagtcct
//
LOCUS       KCOD01003916             788 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 435704pyr ultra-conserved element
            locus uce-2755, sequence.
ACCESSION   KCOD01003916
VERSION     KCOD01003916.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 788)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 788)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..788
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="435704pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>788
                     /note="ultra-conserved element locus uce-2755"
BASE COUNT          261 a          159 c          138 g          230 t
ORIGIN      
        1 cagacattta tatggcgata aatactacct tcaaaaatgc taaaaatgtt ggctaggttt
       61 agtctgagct actaaaaaat tattataaat tgtagcatca gacacaagac agacatgaat
      121 tattggctgg cacagactag aagcaacatt tatctttcac ttcagtctaa atcacactag
      181 ccgcaacacc ttccatttca ctcacacaaa taatacatta ttcaaaataa aatggagcat
      241 tcttgggtaa aaaactactt catttcaaag ggggaaaatg aacaatacac agaaacaaag
      301 aacgacagaa accaaagtta agtaggaaag tggtctatta ttctgtgtta ctgcacaaac
      361 agtgcttgct taattgtgcc tagttagaag ggttggtgca aactgcacac atggaagatg
      421 gcaataaaga cctcagtcag ctttgtggaa tgaagtaact aggtaactgt tttgacatat
      481 gatggtctca gctccacctc atctgttaac agagtgcaaa gatcccaatg tgagccctga
      541 tgtcatcttg tcctcttact cctactaaaa atcagcaaat tcttttgcac atttttctgt
      601 tagagacgca cgaatatctt cttcttcata gtcatcaaag ttgctggtat ctccaggacc
      661 tctgcacttt ggtatgaatg gagcttctac ctgtaggcac atgaaatgtt actggcctaa
      721 tagatttagc attgtgcaca gcaatactcc cattactttt caattcctgc caagatatta
      781 caggttta
//
LOCUS       KCOD01003917             646 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 435814pyr ultra-conserved element
            locus uce-5450, sequence.
ACCESSION   KCOD01003917
VERSION     KCOD01003917.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 646)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 646)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..646
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="435814pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>646
                     /note="ultra-conserved element locus uce-5450"
BASE COUNT          215 a          106 c          138 g          187 t
ORIGIN      
        1 ttgtaaatac gttagagcag ggttagccgt gtttctgtgt gtgtgctttg tatctggtta
       61 tctaagctga tgatatgggc atccccgtac agttgcatat attaaggctt ttaagaaata
      121 tagtaaaaca aaaaatatga cctttaaaag catggttgag ttgcattcat tttataacca
      181 tcaaagcaac tctttactgt tgtaaggtag aaaaatcaat gatgcaatct ttttcctttt
      241 gcctcgtgca atccgtaatt gaaatggaaa atcaaatgaa cggctaacag ataattgttt
      301 tatcaatatt ccctgcctgc cctacaaggg tcagcctaga atgatcatga gccacggata
      361 tgatgaggac aaaatgtgaa attgaacagc aaggaggcaa taaatcaacc ttgacaagaa
      421 agagtgacca gcatgtagct cttgtaggca gcttttggga cactttttgt ctcaggtgtc
      481 tgcactgatt taaaaatgtg agaatataat atttgaagct ctaccagtgg gtaaacaact
      541 ttctaggtta aggcatcatc aaagtaaaca cattgcaaaa aatgagtata ttggggcata
      601 gtgggaaaaa tcccacagtg aaacaacagg ggaaatattc tggggc
//
LOCUS       KCOD01003918             529 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 435922pyr ultra-conserved element
            locus uce-5995, sequence.
ACCESSION   KCOD01003918
VERSION     KCOD01003918.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 529)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 529)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="435922pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>529
                     /note="ultra-conserved element locus uce-5995"
BASE COUNT          137 a          145 c          144 g          103 t
ORIGIN      
        1 ccgaggccca gttcctcaag cgcaacgggc gctacgaaga cgagcaccct tcctaccagg
       61 aagtgaaagc ccagactggg agcttcccag ttaaaaacct cacgcaaagg aggcccttgt
      121 ccgcacgaag ctacagcaca gagagctacg gcacggccca aacgcggccg gtctcagcga
      181 ggcccaccat ggcagctctg ctggaaaaga ttccgtcaga ctataacttg ggtaactatg
      241 gcgacaagcc ttccgatagc agtgatataa agccgaggcc tccccctggg aagggaaatg
      301 agagctgtgc taaaatgccc gctgactgga gacaacagct acttagacat atagaagcta
      361 gaaggttaga cagggtatgt ttggcatttc tctgcaatta atgcctttag ttgtgtgttt
      421 cggtgaccac cagaattccc agggattcct gccgtgtccg agggacctga gggatcccaa
      481 aatccagagg ctcctcactg gtgacattcc gtcactgggg tggtgactc
//
LOCUS       KCOD01003919             557 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 436033pyr ultra-conserved element
            locus uce-2345, sequence.
ACCESSION   KCOD01003919
VERSION     KCOD01003919.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 557)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 557)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..557
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="436033pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>557
                     /note="ultra-conserved element locus uce-2345"
BASE COUNT          173 a          119 c          118 g          147 t
ORIGIN      
        1 tttgaaagta aatatgcata aagtttttaa cttgcattaa tctcagaaca gaaagaccat
       61 aactaaaata atgcctgggg cacactgtga tgcctgtaac tggattttaa ttgacttgaa
      121 gactgtcata gtcctattat cataaaacct gtaatgcact tccagcatgg aggacccatc
      181 tgtgcccacc atccatctgt ttagacatga ttggcaaagt ggtagggaac tcgcagtggt
      241 tgcctctgcc tgaaaggaat aaaccacagg atcttccagt gagtgccaaa aacttctgag
      301 aaggtctgct gccatggctt tcggggcctt gatctacagc attattagtg aaagacagca
      361 cgcccacagt gcacttcagt acaacaatgt aggttggctg gggatccatt actggactct
      421 gatgaattgt gtccgagcat cacttttatt tcattacgac acgcagctga gacttaactt
      481 tggagaacag aaactcatca atcaaacaaa ggcaccttct gaagcacagg agaaaacaca
      541 gcagaaagta ttttttg
//
LOCUS       KCOD01003920             448 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 436242pyr ultra-conserved element
            locus uce-850, sequence.
ACCESSION   KCOD01003920
VERSION     KCOD01003920.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 448)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 448)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..448
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="436242pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>448
                     /note="ultra-conserved element locus uce-850"
BASE COUNT          148 a           69 c           90 g          141 t
ORIGIN      
        1 aacttgaaca ttatgtgttt gaatggatgt aaaatatcta tctctcaaaa tctggctgca
       61 actctaagaa tgccatggaa agaaaaaaaa attactagct ctagtaacag atgtgaaatt
      121 acattagata aatataatca ttagtttcag tctcaccctg gttaatttgt ttgtggaaat
      181 gtgcaaccca ttattcatta ggtaattttt cacacattga ttagaaagcc atgtcgaatt
      241 gtgacccagc acattggggt ttgcctatct tgcagtgaac tatatcgctt acaatagtgg
      301 aaatggggga caaaatgttt atctcaggct gattttgtgc caataagtaa agtaaatcaa
      361 tagccagtga agtgtgaaca acatttctct gctgtataat atggttttgg gggcaatttg
      421 acatgctaca aggggaaaca agggtctt
//
LOCUS       KCOD01003921             608 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 436351pyr ultra-conserved element
            locus uce-2209, sequence.
ACCESSION   KCOD01003921
VERSION     KCOD01003921.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 608)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 608)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..608
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="436351pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>608
                     /note="ultra-conserved element locus uce-2209"
BASE COUNT          202 a           98 c          112 g          196 t
ORIGIN      
        1 gcctgggctt tgtggggcca tttctttatt aatttaatac ctctgcgctc agctgtggtg
       61 cggaattcag gattgattcc tacactgatt tccacaatat gatttacata ggagctgagt
      121 gtaaatttaa aataatttgg actgaatgat ccttactaga atggatggcc tcaagaaaag
      181 gatggaaaat aaaagcagct ttagtcagaa tctaagcaat ttgctgccaa atacaagcag
      241 catttcccca gattataatt tacactgtat taactgtcaa gagtactttt gagaaatata
      301 gataacaatt cagatgcaat cgatagggag tgacagttga ttttaaagct taatgcaaga
      361 caagaaagaa atgactgggg tatcagctct ggaagaataa atttgttttg tatttgattt
      421 ttgtgttaaa tttattactg ccaagaacag ctctctttca ataatattaa gaacaagatt
      481 gtgaaattgc aacatgtttg tctcccacag ttttcacagc atatccaata taaaatgatg
      541 ccccttctaa atagatcaaa ttaaactgct atatatattc cttttgctgc actggttaag
      601 taaagtgc
//
LOCUS       KCOD01003922             802 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 436462pyr ultra-conserved element
            locus uce-1290, sequence.
ACCESSION   KCOD01003922
VERSION     KCOD01003922.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 802)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 802)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..802
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="436462pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>802
                     /note="ultra-conserved element locus uce-1290"
BASE COUNT          242 a          171 c          147 g          242 t
ORIGIN      
        1 ttaaaacaag aattctctta tcaaaggtat caggattgcc taagtgtgaa atgtttccaa
       61 ttaaaatttc attcatgttt agccaatttt tcaattgaat taaaaaagca taaaatacat
      121 ataatctaat gtatcctctc tgaagagtga agtctttatt ctgctgaatt cagaagagcc
      181 tcatccaata taatcactgc attcattcca attataagag caaagttgtg cagacttctt
      241 atatgttatg caatgtcaag aagcacagtg cacagcacta attcctcaag tgaaagaggc
      301 agcgatttcc cacagcagct ccttgattta aattacagag cacatttatt atgcttctgt
      361 tcctctgact gtgaaatacc atagtacagt agctttgttc tgacctcttc tccaaagccc
      421 tgcctcaaag tgtgactaat ctagtgccgg atgacagcta acttcaacat cagacaacac
      481 gaaaattgaa gacacttttt atcctcttgc caatctgcga gtgtctgaat aagcctcgtc
      541 aacttcatta caaactcatc atctcttgtg tagataatga tagcctaggc tggtggagaa
      601 ctcagcttct tgttgttttt actgactctc tctgcctcca ggccaagcat ctgtggggat
      661 aatgaatgga gcaattcttt tggcacaaaa caaaaggctc ttggggtggg gaaaggcccg
      721 tggcgtcagt cgaggcccag ctctcacaag cgaaatttct ttgttatgaa tcggttctca
      781 gaaaatagct ctgtagtaac ca
//
LOCUS       KCOD01003923             506 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 436569pyr ultra-conserved element
            locus uce-3801, sequence.
ACCESSION   KCOD01003923
VERSION     KCOD01003923.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 506)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 506)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..506
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="436569pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>506
                     /note="ultra-conserved element locus uce-3801"
BASE COUNT          156 a           77 c           83 g          190 t
ORIGIN      
        1 aaatttcatg acctttaaat gcagttttga atattatctc aacaatttaa atgtattttt
       61 tattttaaga ttaatcttat tcaattttgc caatttaagc agagaagttt actggaaaat
      121 gttttcatcc aattttattt catttggcta tagatgagtt acacccctgc attctcataa
      181 atgtttgctt tgcctgtttc agtgatcgct gtggagaaga cccaaaccag aaagtaatcc
      241 atggggttat taactccttt gttcatgttg aacagtataa gaaaaaattc cccctaaagg
      301 gcacatttct ggttgtgtat tttaaatttt gaatgtcagt ctagtatatg cattattttt
      361 ccttttctct cttatagttt tatcaggaaa tttttgagtg tccttttctg aatgaaacag
      421 gggagtatta taaacaagaa gcatcaaact tattgcaaga gtcaaattgc tcgcagtaca
      481 tggagaaggt aagagattct tcaata
//
LOCUS       KCOD01003924             552 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 436678pyr ultra-conserved element
            locus uce-2001, sequence.
ACCESSION   KCOD01003924
VERSION     KCOD01003924.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 552)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 552)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..552
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="436678pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>552
                     /note="ultra-conserved element locus uce-2001"
BASE COUNT          165 a          129 c          102 g          156 t
ORIGIN      
        1 ttctatctct cccccagggc cttacaggac accatgtata tcttagtggg attgttcagt
       61 gctgtgtcca ttccatctac ctccaacttc acctgaaggg caaaatcctt aagatcttga
      121 cacaatactg ataaatacat ggaattatta aagttgccat ctcagcagaa taggattgct
      181 gccgcctttg ttctcagggg aatacatatt tcacccagta gcaagacacc caactgctgc
      241 aacaatcaaa actctctgaa atgcctttaa gctaatcatc tttgaacata agcctttgtt
      301 gttaaatcag ggaccttcta gatgcaaggc acagaaacct tttttcccca ccttgcacaa
      361 aacagcttta agcctgtcac cgctgacagt aaggttcagt gatctgtcaa cattcacccc
      421 tgataaagac agtgagagaa atccatggct ctggagagtt cagtagagac caaacagtat
      481 gtttgcaaaa gagcattttt atatgttttc ttgtgacagc actagtttaa cagaaaatag
      541 ttggagtgtg cc
//
LOCUS       KCOD01003925             668 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 436787pyr ultra-conserved element
            locus uce-3932, sequence.
ACCESSION   KCOD01003925
VERSION     KCOD01003925.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 668)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 668)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="436787pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>668
                     /note="ultra-conserved element locus uce-3932"
BASE COUNT          211 a          130 c          128 g          199 t
ORIGIN      
        1 cttgactgca aagtttggga aaactgttcg ctctgctgga ttttaataca tgtttacatc
       61 cttctttgca gaacagcacc acctctcaat taatgttact cttagcctta aaaaagcaat
      121 tgctaataaa taaatgattt tacaaaggct gctgagcatt tttagagact tctaatattt
      181 taaagctttt ccattgatct cctgttaact gagaagcaag aattaacctc aatgacagtg
      241 ctagtagctc tgcagtctat tttggcctgt tctttaagta aaaagagcaa cctagatgag
      301 aattttgtgc ttcactggat attgaaagat gaggcaataa actgctaaac ttgagtaatc
      361 acactctccc agaggaatgc ctcaaatggg gttggtcaaa aaccttgaaa ttctagcctt
      421 ctgcacactg cctgggcttt aacatttgat gagagtcatt atagtggggg actgaataca
      481 agtgtcttct gattacagac cttccattaa aagttcccac cagtgtgcct ttccatagag
      541 aagcgtcaat gggattaaaa tctcaattca ccccagtcaa ttctccagta acacgatttc
      601 attagaggca ggcagggagg aaaatggact agaaagcact gaaacagctg gtgtataaat
      661 tataaagt
//
LOCUS       KCOD01003926             331 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 436897pyr ultra-conserved element
            locus uce-2917, sequence.
ACCESSION   KCOD01003926
VERSION     KCOD01003926.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 331)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 331)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..331
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="436897pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>331
                     /note="ultra-conserved element locus uce-2917"
BASE COUNT           89 a           53 c           65 g          124 t
ORIGIN      
        1 tgaatatgct tatagtaaat aaaaaaagga aagtgtgtaa gggtgtttca ctaacatatt
       61 tggctgttat ctctattttt gttatagaca gctgtatgaa aactataggt gttcatgatc
      121 gtgttttcga tgttaacgac aaagtagaaa attcattaga accagcaggt tagtatgctt
      181 agagaatctc ttttaacaaa tgcgtgtatc cctctggtgc ttcctcttct ctctgcatgc
      241 tttgcatggt acaactgctc tgcttttgca catttctagc agtgctaata tagcttttgg
      301 tatatttcct gtatctttgt ttaatgcagg g
//
LOCUS       KCOD01003927             395 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 436997pyr ultra-conserved element
            locus uce-1943, sequence.
ACCESSION   KCOD01003927
VERSION     KCOD01003927.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 395)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 395)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..395
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="436997pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>395
                     /note="ultra-conserved element locus uce-1943"
BASE COUNT          165 a           72 c           44 g          114 t
ORIGIN      
        1 gaaacagcat gttaaatgaa gtatactctc taaaaaccac cgatgagtgc aaagaatcca
       61 cttagaacat ataaccaaat gttatttaat atcttaaaaa gtaacacaat ccaaaatgga
      121 tatttcacac aacactacat aaacaacatg aacacaatat taccatatgg agggactttc
      181 aaatatagac ttacaaaaat ccctgtcctt ttttttcctt taaattatta tactaagcat
      241 gacaagtaat catcatttac aatatggtac actgacacaa taaaaaccat gttacaaatg
      301 tgctgttata aatcagtaac gttagggaag acatttcatg aactgcaatt atttcatatg
      361 aaatactata caatataaac agaacatcca tcttg
//
LOCUS       KCOD01003928             722 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 437105pyr ultra-conserved element
            locus uce-1037, sequence.
ACCESSION   KCOD01003928
VERSION     KCOD01003928.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 722)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 722)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..722
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="437105pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>722
                     /note="ultra-conserved element locus uce-1037"
BASE COUNT          233 a          136 c          107 g          246 t
ORIGIN      
        1 aagcaacaag gcagctgttg aacaagtact atcaacaaag caatcttcta gccctttgat
       61 ttaggctatt catatcttct gccctgaaat aaaatgactt tcacaattaa aacaccgaaa
      121 tcaatgctgt atctattgtc atgtctgcag gagaaaagct ttaattacaa ctctagttag
      181 ataacacaat cattacacct ccttaatctc aaatataaaa ccagtaccct ttgagtgcta
      241 tgccaccctt tctttgaatg tgaatggctt tttatctgag cactttaatt tgcatgcctt
      301 tgctgcgagg cagctccccg tgatatgtta attgcagagt gctttaagta ctaaaagatt
      361 aacataaaac cctttgcaaa caagctaata gtttatgata atttttgcat ggcctttgtc
      421 tgtctatcac tggattgcct ctagctgtaa ttttataaag aagctgtaaa atatcattta
      481 aacaagttca tttacacata attattacca gaatcacatt attcaattta gatactccag
      541 cctattaaca atccatgaac taaaatgtaa ttaaactatt ttccttttat gaacctattc
      601 attacaatgt gtgggagatg gatctctcag tttcaccgaa aatttttgtt gttggaaatg
      661 acaagtctgg tgctcattct gtgcttttaa ttatattaaa agtatttcaa ggcaggtaag
      721 at
//
LOCUS       KCOD01003929             599 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 437212pyr ultra-conserved element
            locus uce-3904, sequence.
ACCESSION   KCOD01003929
VERSION     KCOD01003929.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 599)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 599)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..599
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="437212pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>599
                     /note="ultra-conserved element locus uce-3904"
BASE COUNT          154 a          102 c          129 g          214 t
ORIGIN      
        1 tgtgtgtgca ctaacattcc ctgggttttg tgtgatcatt ccgagtattg ctgcgagatt
       61 actgtggatg tgatctttta gcatgtgctt ttatataaaa gaaagtggta gctccaaaca
      121 atatagcaat ctaccttata tagagccttc agatactgtg agtggggatt ttgcctgtga
      181 gagggtgagt gaagtgtgct tgtgactgtg cgtgtttgag aacctatata ccagcatgta
      241 ctgagaacgt atgtgtgtag taataattat gctgcaatgt ataatcttgt gtgttattta
      301 aacagtacta gtactgtaca ctggttcctt tccttgtgtt tgcagttgca cactgaatgc
      361 gatgggtgca gcaattacag acatttagta tttcctcccc aacgtacttc aggtgtaaag
      421 acctttctac tgctactacg cttccccttc agtgtgtacc actaaagaat gcattgattg
      481 ttcatacaga gtaaccttgg gggtaatggc tgatttccaa gttattttag caatgtagag
      541 ttgcaatatc catttagcaa tattaaattg ctaatattct gttttccttt taaattttt
//
LOCUS       KCOD01003930             345 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 437317pyr ultra-conserved element
            locus uce-1903, sequence.
ACCESSION   KCOD01003930
VERSION     KCOD01003930.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 345)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 345)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..345
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="437317pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>345
                     /note="ultra-conserved element locus uce-1903"
BASE COUNT          100 a           63 c           58 g          124 t
ORIGIN      
        1 ctgtggagaa gtatgtcccc aggttccttg cacttgccct gtgattatac aatagatttt
       61 aagtctgtga tatctacaaa tctacatcaa aatatattct atagctgtag gaaacagctc
      121 tgaattgtta accttctctc caggtactgg aggtaacaca ctgtgagatt agatgtatat
      181 tttcttcaag atataccacc catcgaggag tccatattta catcttttgt tgatattttt
      241 atagattaaa agagtctctt ttctggtgat aattctgcta agtactgtaa tttgccgcca
      301 ctaatatttg tctgagtcct agtttgcaaa atatatttga aacca
//
LOCUS       KCOD01003931             643 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 437424pyr ultra-conserved element
            locus uce-6273, sequence.
ACCESSION   KCOD01003931
VERSION     KCOD01003931.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 643)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 643)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="437424pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>643
                     /note="ultra-conserved element locus uce-6273"
BASE COUNT          183 a          127 c          117 g          216 t
ORIGIN      
        1 ctttcttaaa aacttcatca cccatcagcc actcgttttg atcgaataat gtctcccaat
       61 ttttagtctt tcatttatta aagaaaaggt cttacctggc ctgttttgta ttgttctctc
      121 tgctctcttt ttttttaatc taaagtaatt tcaaagagtg agcgtcagat atcaaaccca
      181 atatcctttt tctcattagc acttttcccg tgcagacctt caaatgtggt aataattaat
      241 gagtctgtgt cagaaaatga ataaaagatg gctcagatgc ttcactgttc agggctgacc
      301 tttagctgag tctactgtat taatatattc ttgtgttgtc agactcaaag agctaactgc
      361 cttatgaatt atttatcaac acaaaaagtc ttaaccagaa acagtgttaa cattaatttc
      421 taaccctctg tgtcacagca aagcctgcct gcactgcata attgaatttt agttttagac
      481 aagcaatcaa agcacaagtc gctgttgttg taagtgtggc tgcctatgat agcaagagga
      541 acggctgctc tttttgcaca tctggtgcat tacaggcagt tcaggtttct gtgagcaata
      601 agcctgactg cagacaaatg tggaatggat ttgcagtgat gag
//
LOCUS       KCOD01003932             749 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 437538pyr ultra-conserved element
            locus uce-4678, sequence.
ACCESSION   KCOD01003932
VERSION     KCOD01003932.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 749)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 749)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..749
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="437538pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>749
                     /note="ultra-conserved element locus uce-4678"
BASE COUNT          224 a          141 c          163 g          221 t
ORIGIN      
        1 tgcatctgga aacttgtagc taaataagac aatccttcaa actaattctg atgtgtgtgc
       61 atttggtgaa acacttctta aattcagttc actgataaaa aatttaaaat tctttcacat
      121 cttttggaga gcagaatgtc ttatctgtcg agtttcatat agtagctgac tgctttactg
      181 tgccttaagg agctctgatt gcaatatgct gtcaagagcc aacagtccgt gctacttatt
      241 tggctttatg ccaagtctgg ctccttgatt cctcaagaag ttgctatcag cccagagggg
      301 gcaaaaccaa tgagccatag ggcatgcttt ttattaaaga ggagtcaaag agcgaaaaga
      361 aaccacatca gctgctgtca atactgagcg agtgccagaa acccgaaggc taccactgct
      421 gcagaacaac tgccaagcac tataaatctg agatttgctg tgacgcaaag tttccttaag
      481 agcttaattt ctgaagctac tgtactactt ttctcaaagt gctgtatttt taggtaaaat
      541 ccacttgagg gagtgagggt taagatataa gtgtgatttt gatgaatgaa agagctacgc
      601 tgtgtgtggg ttcttggcaa gtagccatgt cttttgggat cacagaaatt attgatgaca
      661 cagaacactc gtatgccctt agcctctaca gctgattcaa cacagaaaga aatgctgtct
      721 agagaggaaa agttttctag tggagattt
//
LOCUS       KCOD01003933             679 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 437644pyr ultra-conserved element
            locus uce-4343, sequence.
ACCESSION   KCOD01003933
VERSION     KCOD01003933.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 679)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 679)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..679
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="437644pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>679
                     /note="ultra-conserved element locus uce-4343"
BASE COUNT          224 a          122 c          110 g          223 t
ORIGIN      
        1 gcaattgcaa acactaacat ggacattttt tagcatcaga aaattctgga ggcttccaaa
       61 taaactcata attcagaagc atttgagaga cagcaatgca tcaataatag attttcagta
      121 ggttatatcc ttgaaagaag gtagatggta aaaataaagt tgttggtggc ctaatacatt
      181 gcaagcggtt tgtcacctac aacactgcat tctttaaaga tatctaacac acaatctcaa
      241 gtgaatttat tgaccaaaac cagttccaca gaaccaatta gtatcttaca caggctgccc
      301 tgcaaggctt atgaggccat ccatcacttg tccatttaac tatttagcat ttgttccagc
      361 aatttgtcac actgtcagaa tggtagcatt tcagaatagg agttttggtt gaaagaaatc
      421 taactcagat agtgcagata tttcttttct aataagactt acacaagatt tatgtttcta
      481 ttatttttaa ccttaagcat cttgtctgga aggtgaggtt aattctttaa aggttccaca
      541 tttaaatcaa ttgtgttaga tatgaattta aaaatattat gcaaagtgga attacttcaa
      601 acttcatcaa caattcacag ttctggagta cgttatctta cagcggcagt gcttacattt
      661 ttatcacttc ttccatcta
//
LOCUS       KCOD01003934             601 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 437750pyr ultra-conserved element
            locus uce-4285, sequence.
ACCESSION   KCOD01003934
VERSION     KCOD01003934.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 601)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="437750pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>601
                     /note="ultra-conserved element locus uce-4285"
BASE COUNT          186 a           86 c          119 g          210 t
ORIGIN      
        1 ggagtgctgg gtgtcagtta cacaaaatat ctaaaagtta attcatgctc tgcagtaatg
       61 ctgatggttt tatttgtatt gcaggtagtt ctttgtgcac tttataatta acagatatta
      121 gtaaatcatt tctcttggct gagctcatga attatgagtt cacaagggac ttttaaaact
      181 ttaggcagac aggattttta gattgcagtt ttaaaaactg aagacaagat cagaaggtaa
      241 atctatacag ttcttattag gttatgttta cagaggaaga tgtgaaattc tacctcgcag
      301 aactggccct tgctttggat caccttcaca gcttgggaat tgtgtacagg gacctgaagc
      361 cagaaaagta aagtaaaatg tattttacca ctattatgtg tattttgctt gttgctttgc
      421 cttttccact gagactttgt aaacaagtac ggtttaaatg aagtaatatt tgctaaagta
      481 ataacagaat acattttaaa tataaacatt gctctttatg tgttttggtg aatgtgaatt
      541 ttaattttca gcattttgct tgatgaagca ggacatatca agttaacagg taggcaccac
      601 t
//
LOCUS       KCOD01003935             699 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 437858pyr ultra-conserved element
            locus uce-7229, sequence.
ACCESSION   KCOD01003935
VERSION     KCOD01003935.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 699)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 699)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="437858pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>699
                     /note="ultra-conserved element locus uce-7229"
BASE COUNT          216 a          134 c          119 g          230 t
ORIGIN      
        1 aaagcactat agcttttgtg cataacttaa ttcattcttc aagacaagta caaaatttgt
       61 cactgacatt tagcgccagc cgtaggcaat ggataaaatg aactagttag caatttaacc
      121 tgtaaaaaaa cagactggga tgaacaattt tctgccatca aagcaaatgg ctaacattta
      181 gcaggatttt atttttattt ttcagcccat cccatcctca aagaagtcag gctaacattt
      241 tttctgggtc ctaaatcttc ctctcagcct atttctttaa tggtttaaag taaatgacta
      301 tccagaggat aattaggcac tgtgctgtcg catcgtgtca ggtcacagct ggatttagtc
      361 agcattaacc tttggggaga attggaatat cagtatcatt taaaattaaa gacgtgtaag
      421 caggcatttc tggagatgtt agaaaagtaa ttgtctgtaa attgtttgac cttgagattt
      481 aattgcatgc acaacacaca ttctagcaag aaccctggac tgtgttcatt ctctttcacc
      541 tccgtacctc tcactttgca gaacccatta agctacctgt ggatttttct gtaaaatatt
      601 aaagattgtt ttatactgag aacaaaagct tttaagtaag acctcttact gttaaatagc
      661 tgtagtatag accccaccta ttcgaatttc agtcttttt
//
LOCUS       KCOD01003936             561 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 438078pyr ultra-conserved element
            locus uce-3912, sequence.
ACCESSION   KCOD01003936
VERSION     KCOD01003936.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 561)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 561)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="438078pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>561
                     /note="ultra-conserved element locus uce-3912"
BASE COUNT          177 a           68 c          108 g          208 t
ORIGIN      
        1 aggagagtgt caaatattct ggcttttgtt gctttgcgtc ataatttgct attgctaagt
       61 ttttggcctg tgaataatag tttttatgtc atgatggtgt agttagaaga atcagagcat
      121 attcaaccat cctttttact tacttttaat caacttgttc ttccaaacaa ggtatggaat
      181 tgatagctgt tattgattgc ttgtagcatt acctaatctt cactaaatgt aggaagcttt
      241 tcagatttag aaaggtggca gaaaatgcct agtaatgatg ctgctgggaa ttgaagctca
      301 ataccgtggt cagtataaaa gtgatatagc tataagaggt attttattat aggtttttta
      361 ttaaatgctc aagctggtgt aatttacaga tattttggag ttgcttatgt ttatttgttt
      421 gaatttacac ctagttttat taattataat atgctggaac tacagaatgt aaggaataca
      481 gtactgtaat aatggatgtc atttatgctt tcaatacaaa agggagatat aagaaatcat
      541 tactaaaaca gatataaacg t
//
LOCUS       KCOD01003937             763 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 438184pyr ultra-conserved element
            locus uce-445, sequence.
ACCESSION   KCOD01003937
VERSION     KCOD01003937.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 763)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 763)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..763
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="438184pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>763
                     /note="ultra-conserved element locus uce-445"
BASE COUNT          246 a          144 c          123 g          250 t
ORIGIN      
        1 ctcacacctc aggattaaag tgccaaggca actaactcat cattattttg gttactaacc
       61 ttttaactgt tgccctacct acatgttcac cagcatcttt ctcataaaat ttctgtaaga
      121 atcacagaaa tgctgaaaaa attattttta cagtgcagcg gaactgctaa gcttgtgcct
      181 cgtttttgat taatttcatg cctgactcag tcagagatta ggccctgaca caggttataa
      241 ttaaatattg aaatcatgaa gtgcaagaat gtttaatttt taaaatatga gttttaattt
      301 acctcataca gagaatagct ctggtcacct gcagagatgc attacacact acattgccta
      361 atgtaggatg cctgaataag gctgagcata cagttaaagt aaactaatgc aatttactga
      421 acagcagtca aatatttatc cagttgatga agcagacttt atgtgaaact cagacaataa
      481 ttaaagagaa gccttgctta aaacatgctt attccagttt ccacaaatat gttataccaa
      541 agcagcatct tccttttctc aaatattgat gttctcctaa cacattatac agtgagcttg
      601 tccttggcat tctcttgact atttaatgaa tacatttcct ggcatttgcc ttatctttgt
      661 tatgttgttc tttggagagc taaaactatt agttagccct tgacagaaaa acatcagagc
      721 aagctagtaa aaggtcttat ggtatcaaag ttattaacat ggt
//
LOCUS       KCOD01003938             402 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 438288pyr ultra-conserved element
            locus uce-1122, sequence.
ACCESSION   KCOD01003938
VERSION     KCOD01003938.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 402)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 402)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..402
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="438288pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>402
                     /note="ultra-conserved element locus uce-1122"
BASE COUNT          134 a           74 c           54 g          140 t
ORIGIN      
        1 tgtgggctct acctgcttta ttgtcagaag gaagactacg aagtctccaa catacagtgt
       61 catcagcatt gtgatctggg aaacaacacc tacagaatct attattcatt aagtgtaacc
      121 aatatataat ttaaaacagt gggttttgtc aaataatgtt aggtcagcat aattttctgc
      181 ctattactaa tatctataac atctttgcct tagtcagctc tatttaaata tgcaatcatt
      241 tacagctttt gactatatgt gtgcgcactc ccaatttcca atattcaact actacaaatt
      301 ttatgctgac atcaatagca aactattaaa gacagtattt cattattggt ttttcatccc
      361 aaaagttatt tacaattata tactaagcac taatattaaa gg
//
LOCUS       KCOD01003939             518 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 438398pyr ultra-conserved element
            locus uce-3279, sequence.
ACCESSION   KCOD01003939
VERSION     KCOD01003939.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 518)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 518)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..518
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="438398pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>518
                     /note="ultra-conserved element locus uce-3279"
BASE COUNT          119 a          166 c          128 g          105 t
ORIGIN      
        1 atagaacagt gggcttcaaa acccatttaa gaaaggaggc agcctgaaga ggagggggat
       61 gaagagacaa ttaattggtg aatccattcc aaatctgtta tcccaggtgg gctcggtgcc
      121 cccagccaga tccccaggat ggctcgtggg gccagggtgc cacccgtgca gagcccagag
      181 tagctgattg acggctcttt gctccatcag catctctgcc ctttattcac agataactct
      241 ctccctgttt ctaggagaaa aaaaaagtgc gttcgctaca tacaaggtga aggcagctgc
      301 gtcagcccac cctcttcaga tggaagctta ctagactctc ctccgtcctc ccctgccatg
      361 ctcgcctccc cctccagaga ctcgaaacca cagactgaac aaacgcaacc cctctcgctc
      421 tcattgaagc ctgacccgct ggcgcacctg gtgatgatgc cgccgccatc ctcgctcgtg
      481 ctcgctgaga gcgctgcgag caagcccggc gccctgcc
//
LOCUS       KCOD01003940             630 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 438505pyr ultra-conserved element
            locus uce-7353, sequence.
ACCESSION   KCOD01003940
VERSION     KCOD01003940.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 630)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 630)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..630
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="438505pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>630
                     /note="ultra-conserved element locus uce-7353"
BASE COUNT          221 a          108 c          112 g          189 t
ORIGIN      
        1 ggcaaatttg ctgtgtttaa tgtattggac accatctgta ttttattcaa atagggttat
       61 atattttgtg aaaataaaaa ccagcctcat gagtcagtgt gtgcaaggca gtcacttgaa
      121 tatatataat gggaaacatg ttttaggttg gaagttgcaa agggaaatca aatgtttgaa
      181 gtgtcaaagt tggaaaaata taaaatacgc ctgacaccgt agctattgaa gccaaaatga
      241 ataaatcatc atctcaggaa agaaaacccc accaagttct tggctataac cttcattttc
      301 ctacactcaa ataaaattac atacaacctg ataatttaac cagacttgtc aataagaact
      361 gatggcttca gcagacacta tcacttcatg ctccagtgta gacttcagaa gcatccagta
      421 atttatctaa ggaataaatt taatgtcaaa cttgtctctt caagttgata gatgcagtgg
      481 agctgatgtg aaatatgcca tattgcagaa cactagagta aaattaaatt aatgccagct
      541 cagtagttta ttccccacgt acagcttttc ctatgtaaga agtattttag tatctttcta
      601 agtagtgcaa gcatgacttc caagaaggaa
//
LOCUS       KCOD01003941             741 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 438615pyr ultra-conserved element
            locus uce-239, sequence.
ACCESSION   KCOD01003941
VERSION     KCOD01003941.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 741)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 741)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..741
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="438615pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>741
                     /note="ultra-conserved element locus uce-239"
BASE COUNT          220 a          154 c          134 g          233 t
ORIGIN      
        1 agatagcaag tggttgagat ttgctatctt tcaatatacc tcttaagtgg taataggata
       61 accccttaac atgttggtag cctatcaagc tgcccctcag acttgaccct ggggtgaaac
      121 gggaaagtca gctctgttca cagcaattca acttctgtgc tagccaataa tgaagtgacc
      181 tgaaataata taaaaccctt gcaggctgtt tgatgatttt tgtctgggat aagagtagag
      241 atcctgattc agagtcacag ttcatttcat ttttcacttc tgatgagatc tcagctgtta
      301 tctgataaaa ttgaacaact attactaggc tctgctgagt aaagcccctt gactgctctt
      361 aacagaaatc ctatacactc cactttgtca gcagttttga attcatcgtc gcaacaagat
      421 gataggaata atcttaccaa ctgagattga cagttcattt cagaaatcaa tatttacaat
      481 ttacttcttt caaagttcat tcgagagaag attccatatt atccctctcc aaataagctg
      541 atcatatctc agtcgtccct ggaatgagtt ttcccaaaat gtgaattttt ggtaaaaatc
      601 aatgtcagca ttgtgcactt taatctcgcc tatgatgaca gtaaatcttt atctttttat
      661 gggtaaacgc cactggctgc tgacaccatt tcctcacaga acaaagcctg gtccatgtgg
      721 actatggtag atacatggaa c
//
LOCUS       KCOD01003942             556 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 438721pyr ultra-conserved element
            locus uce-39, sequence.
ACCESSION   KCOD01003942
VERSION     KCOD01003942.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 556)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 556)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..556
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="438721pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>556
                     /note="ultra-conserved element locus uce-39"
BASE COUNT          188 a          100 c           91 g          177 t
ORIGIN      
        1 aataatttac acttaaagaa cttactctcc tagttgtgcc agtgtatatt tctgtattca
       61 tttgtaattt ttaaagtact atttatgctt ttatttttat actattcaca gtaaactcct
      121 gactcttctg ccccctcata acagacacct aacaatgaag cagcttcaat taagaagcag
      181 aacatcagcc tctggcatct tactctgttg ttccatcttt tttgctaggg agaattcatt
      241 tgtttcttaa ttaagaaaaa caccaatagc atgaaaaatc tgcttatggt acctgaatgg
      301 taattaggtg aaaggtaaaa aagaaacaca cacatacatt ccagtagcag ccaaaatgaa
      361 cttgagctga taaaaatgaa ctaaactacc cttgcataaa tcgaggctga gagaagtgta
      421 cagtcattat ggctaagaca atatgcaaac tatcttcaaa gaaatcaaat tgctagagtg
      481 ttttcatttg catgtattaa ctattaacat aatgaggaga agtgacattg gacccggatt
      541 gtgtgtctgc ttggat
//
LOCUS       KCOD01003943             526 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 438825pyr ultra-conserved element
            locus uce-3778, sequence.
ACCESSION   KCOD01003943
VERSION     KCOD01003943.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 526)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 526)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..526
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="438825pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>526
                     /note="ultra-conserved element locus uce-3778"
BASE COUNT          115 a          123 c          122 g          166 t
ORIGIN      
        1 ggggtccctg caggagcccc tgcccttgtc tccgctgctg ctgcctctct gcatattgca
       61 ggctcattct gatgtgcgct aatgttatta tcctccagaa attgaaatca agtctgaacc
      121 tataatgttt cactgggagg gaattggggt tatatattcc tgtgtacagc agcattctat
      181 ttcagtcata gcatttaatt atgattggtg tgttagtgcc caccagagca taacaaattg
      241 tcattatgtt attctgctga gtctaattta attggcaagt tgtcacaaaa gcaattatcc
      301 atcatttatt ttgttgccat aaccacatct tggagagcac ctgctgtctg aagtggaaag
      361 gctctgcagt ctcttggtcc tggatttctt ccacttgcct gacacaaaga caccatttcc
      421 tcttatatgt ttctctttcc cagcgtgggc tcatgtgcag ggctggaaat gctggaggaa
      481 atgctgtgtg cgccctgttg ggggcacctt ggagcccgcc cagggc
//
LOCUS       KCOD01003944             598 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 438931pyr ultra-conserved element
            locus uce-1243, sequence.
ACCESSION   KCOD01003944
VERSION     KCOD01003944.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 598)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 598)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..598
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="438931pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>598
                     /note="ultra-conserved element locus uce-1243"
BASE COUNT          181 a          115 c           90 g          212 t
ORIGIN      
        1 cagagcaatt attattgctc attacatttc catgcagaaa tcattacatt ttatatcaca
       61 atatgcattt ttttataagt aagctttaaa caaattagaa tacttaatat gctttctgaa
      121 cttttgccag acgtgtgctc ccaagccggt tccttctatt tacattgtag catttatcca
      181 tttccaaata tgagaagatt tatctatcag attctgtgca aattcagtac acagataatt
      241 tgtaaaaagc tttctttttc aaaatgttct gtggtttttc taatctcatc tcttttctaa
      301 tttcctaatc atataacctt gaagtctaaa gacacagcct gtgataatct gtgtaaactg
      361 tctttattgt tatcacagac atttattaca cacgcatacg cattcaaagc tgccttttaa
      421 gtaatacttt agtcaaagtt caatcagatc cacattactg ctactcatca gatagaaagt
      481 gttcgcgagc aggaggggga tattgacttt aaaaattcac tggcgaggcg tacagagcct
      541 gcaggaatgt caaaactcca acctgcattt tgatgttttt gcctcaggtt agtcttga
//
LOCUS       KCOD01003945             454 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 439038pyr ultra-conserved element
            locus uce-1403, sequence.
ACCESSION   KCOD01003945
VERSION     KCOD01003945.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 454)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 454)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="439038pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>454
                     /note="ultra-conserved element locus uce-1403"
BASE COUNT          114 a          112 c           98 g          130 t
ORIGIN      
        1 cttcccgtcc tttgggtggc atcacaaacc ttcatccccc ttgctggcac cccgaacgct
       61 cccgtgggct cacccacgga gtgtccggga gtcacccgtc aacaacaaac agttaaatat
      121 caatgcactt tggtaacaat aaaccctgct tttaatttat gctaatatgt agggttgtgg
      181 tgacagtaag aacaaaatta cagagtggct ttctagctgg taattatccc tccattttcg
      241 ttgctcggga agatggacac acaattatgc tctcttgctg tatattaata cggattcttg
      301 acatcttcag cagacctgga gctgtcatcg ggctttttgt ctactttaat tgaaaattaa
      361 tggttactgt gttaccacgg aaaccgtggc aatggacgcc aatagcgctc acatatcaaa
      421 caggcactgg tggcattgtc tgtccgtggt gacc
//
LOCUS       KCOD01003946             419 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Pyrrhocorax pyrrhocorax 439147pyr ultra-conserved element
            locus uce-1021, sequence.
ACCESSION   KCOD01003946
VERSION     KCOD01003946.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450356
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Pyrrhocorax pyrrhocorax
  ORGANISM  Pyrrhocorax pyrrhocorax
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Pyrrhocorax.
REFERENCE   1  (bases 1 to 419)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 419)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Pyrrhocorax pyrrhocorax"
                     /mol_type="genomic DNA"
                     /submitter_seqid="439147pyr"
                     /db_xref="taxon:56790"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>419
                     /note="ultra-conserved element locus uce-1021"
BASE COUNT          128 a           85 c           92 g          114 t
ORIGIN      
        1 aattcccaag tcagagcagg aggggaaatt aatggcagcg ttcaagaaga atgatggagg
       61 gaaatataga aagcagtcaa tagcccattc tgcgctgtac ggacctgaca ggaatttcac
      121 agtctcttgg tttttcagcc cactcatgtg cattcatcag aaaccagtca catctggctg
      181 ccaggatggg gggttaattt tctctaaatg cctcagcagt tttgttctag ctgaggcaaa
      241 ctctgtgact gcaaagctga tgagtaaaat atttctactt cacccagttt aactcaaaac
      301 cgatagcctc gggacatatt gaacctttct taaaataatc ttttgaagct ttttgaatgg
      361 cacatcaggt caggccaaag tttaaaatgc aagtttaaga ctttgatgga cacaagagc
//
